Query 012618
Match_columns 460
No_of_seqs 595 out of 2812
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-41 5.1E-46 323.6 27.9 268 10-298 4-277 (285)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 3.6E-42 1.2E-46 324.1 22.6 228 8-255 7-247 (253)
3 4g8k_A 2-5A-dependent ribonucl 100.0 9.6E-41 3.3E-45 327.6 28.7 253 10-297 24-324 (337)
4 1n11_A Ankyrin; clathrin, BAND 100.0 6.1E-41 2.1E-45 340.6 28.2 233 2-256 4-237 (437)
5 1k1a_A B-cell lymphoma 3-encod 100.0 3.9E-41 1.3E-45 313.6 23.9 227 7-255 5-240 (241)
6 3aji_A 26S proteasome non-ATPa 100.0 4.2E-41 1.4E-45 311.7 23.9 226 10-256 5-230 (231)
7 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-41 4.7E-46 326.1 21.0 263 7-303 11-282 (285)
8 1n11_A Ankyrin; clathrin, BAND 100.0 1.3E-40 4.3E-45 338.3 28.8 254 10-295 145-398 (437)
9 1wdy_A 2-5A-dependent ribonucl 100.0 2.5E-40 8.6E-45 315.1 29.1 231 8-260 36-282 (285)
10 3ljn_A Hypothetical protein; a 100.0 6.4E-42 2.2E-46 339.6 15.6 232 7-258 16-271 (364)
11 2xai_A ASB-9, ankyrin repeat a 100.0 1.4E-40 4.6E-45 314.9 23.5 223 10-258 2-224 (261)
12 3b7b_A Euchromatic histone-lys 100.0 3.4E-40 1.2E-44 306.8 25.6 222 8-250 8-229 (237)
13 3d9h_A CDNA FLJ77766, highly s 100.0 3.5E-40 1.2E-44 316.3 22.9 223 8-256 56-279 (285)
14 3utm_A Tankyrase-1; tankyrase, 100.0 6.8E-40 2.3E-44 321.9 25.2 264 8-295 21-330 (351)
15 1oy3_D Transcription factor in 100.0 5.4E-40 1.9E-44 313.0 23.7 216 7-241 5-268 (282)
16 4b93_B Ankyrin repeat domain-c 100.0 5.1E-41 1.7E-45 319.3 16.4 228 8-255 8-243 (269)
17 2dzn_A Probable 26S proteasome 100.0 3.2E-39 1.1E-43 298.3 23.6 218 11-252 2-226 (228)
18 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-40 4.6E-45 331.5 15.4 260 8-297 91-369 (373)
19 2fo1_E LIN-12 protein; beta-ba 100.0 8.3E-40 2.8E-44 325.8 21.0 234 9-256 123-371 (373)
20 2f8y_A Notch homolog 1, transl 100.0 2E-39 6.8E-44 298.7 20.6 217 21-257 1-217 (223)
21 4g8k_A 2-5A-dependent ribonucl 100.0 2.1E-38 7.2E-43 310.9 27.1 234 2-260 48-330 (337)
22 3eu9_A Huntingtin-interacting 100.0 1.1E-38 3.9E-43 296.1 23.8 230 6-257 4-236 (240)
23 1yyh_A HN1;, notch 1, ankyrin 100.0 6.2E-39 2.1E-43 302.0 18.9 228 42-298 6-247 (253)
24 3utm_A Tankyrase-1; tankyrase, 100.0 8.9E-38 3.1E-42 306.7 27.3 223 8-255 55-333 (351)
25 3b7b_A Euchromatic histone-lys 100.0 6.1E-38 2.1E-42 291.5 24.0 226 40-294 5-230 (237)
26 1oy3_D Transcription factor in 100.0 2.5E-38 8.4E-43 301.5 21.8 226 42-285 5-269 (282)
27 1k1a_A B-cell lymphoma 3-encod 100.0 2.5E-38 8.5E-43 294.6 20.4 229 42-296 5-238 (241)
28 1s70_B 130 kDa myosin-binding 100.0 4.2E-38 1.4E-42 303.0 18.6 233 8-250 37-284 (299)
29 3kea_A K1L; tropism, ANK repea 100.0 1.5E-38 5.2E-43 304.9 13.3 194 44-260 29-224 (285)
30 2xai_A ASB-9, ankyrin repeat a 100.0 1.5E-37 5.2E-42 293.9 19.6 217 45-295 2-218 (261)
31 3kea_A K1L; tropism, ANK repea 100.0 1.9E-37 6.4E-42 297.3 19.6 219 8-259 28-249 (285)
32 3aji_A 26S proteasome non-ATPa 100.0 8.5E-37 2.9E-41 282.6 22.6 224 44-296 4-227 (231)
33 3ljn_A Hypothetical protein; a 100.0 2.3E-37 7.8E-42 306.8 18.9 237 41-297 15-267 (364)
34 2dzn_A Probable 26S proteasome 100.0 1.1E-36 3.9E-41 281.1 18.8 210 46-284 2-218 (228)
35 1s70_B 130 kDa myosin-binding 100.0 1E-36 3.5E-41 293.3 16.7 244 16-285 3-276 (299)
36 2rfa_A Transient receptor pote 100.0 5.7E-36 2E-40 277.4 20.8 207 46-258 3-224 (232)
37 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-37 8E-42 287.8 11.5 210 8-236 5-224 (236)
38 2f8y_A Notch homolog 1, transl 100.0 5.3E-35 1.8E-39 269.0 26.8 196 8-225 22-218 (223)
39 1ikn_D Protein (I-kappa-B-alph 100.0 7.2E-37 2.4E-41 284.5 13.4 205 43-258 5-211 (236)
40 3hra_A Ankyrin repeat family p 100.0 3.8E-35 1.3E-39 265.6 24.1 192 45-254 4-201 (201)
41 4b93_B Ankyrin repeat domain-c 100.0 6.6E-37 2.3E-41 290.9 11.7 214 42-285 7-229 (269)
42 2rfa_A Transient receptor pote 100.0 2.3E-35 7.8E-40 273.4 21.6 201 10-228 2-227 (232)
43 3eu9_A Huntingtin-interacting 100.0 2.6E-35 8.7E-40 273.4 21.1 227 43-298 6-234 (240)
44 3hra_A Ankyrin repeat family p 100.0 3.2E-34 1.1E-38 259.5 24.0 193 8-221 2-201 (201)
45 2pnn_A Transient receptor pote 100.0 2E-35 6.8E-40 281.0 14.9 214 7-236 9-272 (273)
46 2etb_A Transient receptor pote 100.0 2.6E-35 8.9E-40 277.4 13.6 193 46-257 2-247 (256)
47 2pnn_A Transient receptor pote 100.0 2.3E-35 7.9E-40 280.5 12.4 204 42-261 9-264 (273)
48 4gpm_A Engineered protein OR26 100.0 6.1E-34 2.1E-38 251.1 20.3 159 48-226 6-164 (169)
49 4gpm_A Engineered protein OR26 100.0 1.1E-33 3.6E-38 249.5 20.0 158 84-258 6-163 (169)
50 2etb_A Transient receptor pote 100.0 1.6E-34 5.5E-39 272.0 14.4 199 11-225 2-248 (256)
51 3jxi_A Vanilloid receptor-rela 100.0 1.2E-33 4E-38 266.6 14.0 205 9-226 3-253 (260)
52 1sw6_A Regulatory protein SWI6 100.0 1.8E-34 6.2E-39 282.0 8.5 243 2-282 42-324 (327)
53 1sw6_A Regulatory protein SWI6 100.0 6.2E-34 2.1E-38 278.3 11.9 213 14-242 100-327 (327)
54 3jxi_A Vanilloid receptor-rela 100.0 6.5E-34 2.2E-38 268.3 11.5 197 45-260 4-254 (260)
55 4hbd_A KN motif and ankyrin re 100.0 1.6E-32 5.6E-37 261.7 14.2 190 46-254 76-273 (276)
56 3v30_A DNA-binding protein rfx 100.0 2.2E-31 7.6E-36 235.0 17.0 168 47-234 3-171 (172)
57 4hbd_A KN motif and ankyrin re 100.0 1E-31 3.4E-36 256.2 14.0 191 11-221 76-273 (276)
58 2rfm_A Putative ankyrin repeat 100.0 2.6E-31 8.8E-36 239.0 15.8 163 75-254 28-190 (192)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.9E-30 6.3E-35 226.5 17.5 157 47-223 6-162 (162)
60 2rfm_A Putative ankyrin repeat 100.0 1.6E-30 5.4E-35 233.8 16.6 160 42-221 31-190 (192)
61 2y1l_E Darpin-8.4; hydrolase-i 100.0 4E-30 1.4E-34 226.5 18.8 155 46-220 14-168 (169)
62 3v31_A Ankyrin repeat family A 100.0 3.2E-30 1.1E-34 226.3 18.1 158 46-223 3-160 (167)
63 2vge_A RELA-associated inhibit 100.0 2E-33 6.7E-38 260.6 -3.4 201 27-250 1-207 (229)
64 2y1l_E Darpin-8.4; hydrolase-i 100.0 7.1E-30 2.4E-34 224.9 19.5 159 79-254 11-169 (169)
65 3v31_A Ankyrin repeat family A 100.0 3E-30 1E-34 226.5 16.4 158 81-255 2-159 (167)
66 3v30_A DNA-binding protein rfx 100.0 3.4E-30 1.2E-34 227.3 16.6 170 11-201 2-171 (172)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.1E-30 7.2E-35 226.1 14.9 158 81-256 4-162 (162)
68 3f6q_A Integrin-linked protein 100.0 1E-29 3.5E-34 225.9 17.2 166 46-230 5-170 (179)
69 3f6q_A Integrin-linked protein 100.0 1.2E-29 4E-34 225.5 16.4 167 80-262 3-169 (179)
70 3twr_A Tankyrase-2; ankyrin re 100.0 4.4E-30 1.5E-34 225.0 13.4 157 45-221 7-163 (165)
71 1awc_B Protein (GA binding pro 100.0 2.6E-29 8.9E-34 217.4 17.7 150 83-250 3-152 (153)
72 3twr_A Tankyrase-2; ankyrin re 100.0 3.2E-29 1.1E-33 219.5 15.9 160 79-255 5-164 (165)
73 1awc_B Protein (GA binding pro 100.0 9.7E-29 3.3E-33 213.8 17.9 149 13-180 4-152 (153)
74 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.5E-30 5.1E-35 242.7 6.8 190 45-257 4-205 (239)
75 1ycs_B 53BP2, P53BP2; ankyrin 100.0 4.8E-31 1.6E-35 246.0 1.1 209 9-238 3-225 (239)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.6E-28 5.6E-33 212.8 16.3 152 47-219 3-154 (156)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.8E-28 9.5E-33 211.3 17.3 155 10-183 1-155 (156)
78 2vge_A RELA-associated inhibit 100.0 1E-31 3.6E-36 248.9 -7.4 189 8-218 18-208 (229)
79 2aja_A Ankyrin repeat family p 99.9 7.4E-30 2.5E-34 253.0 0.2 213 8-255 89-343 (376)
80 2aja_A Ankyrin repeat family p 99.9 1.7E-30 5.9E-35 257.5 -5.0 225 8-252 125-370 (376)
81 1d9s_A Cyclin-dependent kinase 99.9 9.6E-27 3.3E-31 197.2 12.7 134 72-223 2-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 6.7E-27 2.3E-31 203.0 10.2 144 77-238 7-151 (156)
83 1d9s_A Cyclin-dependent kinase 99.9 1.2E-26 4E-31 196.6 11.0 130 110-256 6-136 (136)
84 3t8k_A Uncharacterized protein 99.9 6.7E-27 2.3E-31 209.3 7.2 156 48-225 8-181 (186)
85 3t8k_A Uncharacterized protein 99.9 2.2E-26 7.4E-31 206.0 8.8 154 82-253 6-176 (186)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 7.6E-26 2.6E-30 196.3 10.9 139 44-203 10-149 (156)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.6E-25 2.9E-29 181.6 14.6 126 115-256 1-126 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-24 6.5E-29 179.4 16.6 125 82-223 2-126 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 7.4E-25 2.5E-29 185.5 13.3 126 113-254 11-136 (136)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 1.6E-24 5.5E-29 183.4 14.9 125 44-184 12-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 4.1E-25 1.4E-29 187.2 11.1 129 111-255 5-133 (137)
92 3deo_A Signal recognition part 99.9 2.3E-25 8E-30 198.6 4.0 109 81-207 43-152 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.9 2.1E-24 7.2E-29 182.8 9.5 131 73-221 2-132 (137)
94 2b0o_E UPLC1; arfgap, structur 99.9 2.5E-23 8.5E-28 200.5 17.3 142 81-244 150-299 (301)
95 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-23 5.9E-28 201.6 14.0 139 47-211 152-299 (301)
96 3ui2_A Signal recognition part 99.9 1.4E-23 4.6E-28 196.1 11.4 171 11-223 15-185 (244)
97 3ui2_A Signal recognition part 99.9 6.9E-25 2.4E-29 205.0 2.5 169 45-254 14-183 (244)
98 3deo_A Signal recognition part 99.9 3.3E-23 1.1E-27 184.6 12.7 140 44-220 42-181 (183)
99 3aaa_C Myotrophin, protein V-1 99.9 4.2E-23 1.4E-27 171.4 11.8 117 114-246 5-121 (123)
100 3ehr_A Osteoclast-stimulating 99.9 1.1E-23 3.7E-28 193.6 7.9 131 114-260 71-202 (222)
101 3ehr_A Osteoclast-stimulating 99.9 3.8E-23 1.3E-27 189.9 10.0 133 78-232 69-207 (222)
102 1dcq_A PYK2-associated protein 99.9 6.3E-22 2.1E-26 188.5 16.3 131 117-257 131-264 (278)
103 1dcq_A PYK2-associated protein 99.9 3.6E-22 1.2E-26 190.1 14.2 198 7-224 62-264 (278)
104 3aaa_C Myotrophin, protein V-1 99.9 1.6E-22 5.6E-27 167.8 10.1 108 10-123 6-113 (123)
105 3jue_A Arfgap with coiled-coil 99.9 1.6E-21 5.6E-26 192.4 13.8 144 81-241 198-347 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.9 3.6E-21 1.2E-25 198.4 16.5 130 82-228 132-270 (497)
107 3lvq_E ARF-GAP with SH3 domain 99.9 5.7E-21 2E-25 196.9 17.3 139 116-264 132-273 (497)
108 3jue_A Arfgap with coiled-coil 99.8 3.5E-21 1.2E-25 190.0 13.3 128 112-255 195-325 (368)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.2E-21 2.1E-25 150.1 10.9 93 160-256 1-93 (93)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.7E-20 9.2E-25 146.4 12.4 93 115-223 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-20 3.9E-25 154.6 8.1 109 111-235 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.2E-19 4.3E-24 148.3 7.7 94 44-141 7-100 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 6.8E-18 2.3E-22 137.0 9.8 94 153-250 16-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 3.8E-17 1.3E-21 132.6 10.5 89 43-135 21-109 (110)
115 2ea5_A Cell growth regulator w 99.3 1.5E-12 5.2E-17 95.0 5.6 54 317-385 11-65 (68)
116 2vje_A E3 ubiquitin-protein li 99.2 8E-12 2.7E-16 90.1 4.4 54 320-384 7-63 (64)
117 2vje_B MDM4 protein; proto-onc 99.2 1.1E-11 3.6E-16 89.1 4.3 54 320-384 6-62 (63)
118 2yho_A E3 ubiquitin-protein li 99.1 4.5E-11 1.6E-15 89.9 3.4 50 322-386 19-69 (79)
119 2ysl_A Tripartite motif-contai 99.1 3.3E-10 1.1E-14 84.1 7.2 54 317-378 16-69 (73)
120 4ic3_A E3 ubiquitin-protein li 99.0 8.3E-11 2.9E-15 87.5 3.0 49 321-384 24-73 (74)
121 2ecg_A Baculoviral IAP repeat- 99.0 1.1E-10 3.6E-15 87.2 3.0 49 321-384 25-74 (75)
122 2d8t_A Dactylidin, ring finger 99.0 4.5E-10 1.5E-14 82.8 5.1 50 319-379 13-62 (71)
123 1chc_A Equine herpes virus-1 r 98.9 8.5E-10 2.9E-14 80.6 4.9 53 320-383 4-57 (68)
124 2csy_A Zinc finger protein 183 98.9 1.3E-09 4.5E-14 82.6 5.9 49 319-378 13-61 (81)
125 2djb_A Polycomb group ring fin 98.9 2.1E-09 7.1E-14 79.5 5.5 50 319-379 13-63 (72)
126 2ecn_A Ring finger protein 141 98.9 1E-09 3.4E-14 80.7 3.6 52 319-382 13-64 (70)
127 2ea6_A Ring finger protein 4; 98.9 1.4E-09 4.9E-14 79.5 4.3 49 319-378 13-68 (69)
128 2kiz_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 77.9 5.5 52 318-380 11-65 (69)
129 2ecm_A Ring finger and CHY zin 98.8 2.2E-09 7.4E-14 74.8 4.3 47 320-377 4-54 (55)
130 2ect_A Ring finger protein 126 98.8 3.9E-09 1.3E-13 79.3 5.6 52 319-381 13-67 (78)
131 4ayc_A E3 ubiquitin-protein li 98.8 2.2E-09 7.4E-14 90.2 4.5 47 322-379 54-100 (138)
132 2ecy_A TNF receptor-associated 98.8 2.6E-09 8.8E-14 77.5 4.2 50 319-378 13-62 (66)
133 2ep4_A Ring finger protein 24; 98.8 2.8E-09 9.7E-14 79.2 4.4 54 319-383 13-69 (74)
134 2ecw_A Tripartite motif-contai 98.8 6.8E-09 2.3E-13 79.3 6.5 55 319-378 17-71 (85)
135 2ct2_A Tripartite motif protei 98.8 3.8E-09 1.3E-13 81.3 5.1 52 319-378 13-68 (88)
136 2ecv_A Tripartite motif-contai 98.8 5.5E-09 1.9E-13 79.8 5.7 56 318-378 16-71 (85)
137 2ysj_A Tripartite motif-contai 98.8 6.5E-09 2.2E-13 74.6 5.5 48 317-372 16-63 (63)
138 2yur_A Retinoblastoma-binding 98.8 6.3E-09 2.1E-13 77.3 5.5 49 319-376 13-62 (74)
139 1e4u_A Transcriptional repress 98.8 6.3E-09 2.2E-13 77.7 5.0 52 320-381 10-65 (78)
140 3ng2_A RNF4, snurf, ring finge 98.8 2.5E-09 8.4E-14 78.8 2.7 48 320-378 9-63 (71)
141 1iym_A EL5; ring-H2 finger, ub 98.8 5.2E-09 1.8E-13 72.8 4.1 47 320-377 4-54 (55)
142 2xeu_A Ring finger protein 4; 98.8 3E-09 1E-13 76.5 3.0 48 321-379 3-57 (64)
143 2egp_A Tripartite motif-contai 98.7 3.5E-09 1.2E-13 79.7 2.9 56 319-378 10-65 (79)
144 1bor_A Transcription factor PM 98.7 2.2E-09 7.5E-14 75.0 1.3 45 319-377 4-48 (56)
145 1x4j_A Ring finger protein 38; 98.7 5.4E-09 1.9E-13 77.8 3.5 49 319-378 21-72 (75)
146 2l0b_A E3 ubiquitin-protein li 98.7 7.4E-09 2.5E-13 80.2 4.2 49 319-378 38-89 (91)
147 2y1n_A E3 ubiquitin-protein li 98.7 1.1E-08 3.7E-13 99.1 5.1 55 321-385 332-386 (389)
148 2ecj_A Tripartite motif-contai 98.7 2.9E-08 9.9E-13 69.7 5.9 46 319-372 13-58 (58)
149 1t1h_A Gspef-atpub14, armadill 98.7 1.8E-08 6.3E-13 75.5 4.8 49 320-378 7-55 (78)
150 3ztg_A E3 ubiquitin-protein li 98.7 1.9E-08 6.5E-13 78.1 4.8 50 319-377 11-61 (92)
151 3t6p_A Baculoviral IAP repeat- 98.6 7E-09 2.4E-13 100.0 2.4 50 320-384 294-344 (345)
152 3lrq_A E3 ubiquitin-protein li 98.6 1.9E-08 6.5E-13 79.3 4.1 47 322-378 23-70 (100)
153 1g25_A CDK-activating kinase a 98.6 9.2E-09 3.2E-13 74.2 2.0 48 321-378 3-55 (65)
154 3fl2_A E3 ubiquitin-protein li 98.6 2.2E-08 7.4E-13 82.4 4.3 48 321-378 52-99 (124)
155 1jm7_A BRCA1, breast cancer ty 98.6 1.8E-08 6E-13 81.4 3.4 49 322-378 22-70 (112)
156 2y43_A E3 ubiquitin-protein li 98.6 2.7E-08 9.1E-13 78.4 4.2 47 321-378 22-69 (99)
157 2ckl_A Polycomb group ring fin 98.6 3.6E-08 1.2E-12 79.0 3.9 47 321-378 15-62 (108)
158 1z6u_A NP95-like ring finger p 98.6 3.9E-08 1.3E-12 83.5 4.3 49 321-379 78-126 (150)
159 3l11_A E3 ubiquitin-protein li 98.5 2.1E-08 7E-13 81.4 2.1 48 321-378 15-62 (115)
160 1wgm_A Ubiquitin conjugation f 98.5 2.1E-07 7.3E-12 72.7 6.7 51 318-379 19-70 (98)
161 2kr4_A Ubiquitin conjugation f 98.5 1.5E-07 5.1E-12 71.7 5.5 50 319-379 12-61 (85)
162 3hct_A TNF receptor-associated 98.5 1.2E-07 4E-12 77.2 4.9 52 318-379 15-66 (118)
163 2ecl_A Ring-box protein 2; RNF 98.5 1.1E-07 3.7E-12 71.8 4.0 48 320-378 14-76 (81)
164 2kre_A Ubiquitin conjugation f 98.4 1.9E-07 6.3E-12 73.4 5.4 49 319-378 27-75 (100)
165 2ckl_B Ubiquitin ligase protei 98.4 9.3E-08 3.2E-12 82.8 4.0 48 321-378 54-102 (165)
166 1v87_A Deltex protein 2; ring- 98.4 9E-08 3.1E-12 77.4 3.5 51 322-378 26-94 (114)
167 1rmd_A RAG1; V(D)J recombinati 98.4 1.6E-07 5.4E-12 76.3 3.9 48 321-378 23-70 (116)
168 4ap4_A E3 ubiquitin ligase RNF 98.4 1.7E-07 6E-12 77.8 4.0 54 320-384 6-66 (133)
169 3knv_A TNF receptor-associated 98.4 1.1E-07 3.7E-12 79.8 2.3 49 318-376 28-76 (141)
170 1jm7_B BARD1, BRCA1-associated 98.3 1.6E-07 5.4E-12 76.4 1.7 44 321-377 22-66 (117)
171 3dpl_R Ring-box protein 1; ubi 98.2 9.8E-07 3.3E-11 69.9 4.8 46 320-376 36-99 (106)
172 4ap4_A E3 ubiquitin ligase RNF 98.1 9.2E-07 3.2E-11 73.4 3.2 50 319-379 70-126 (133)
173 2c2l_A CHIP, carboxy terminus 98.1 1.8E-06 6.1E-11 81.4 5.4 49 320-378 207-255 (281)
174 3hcs_A TNF receptor-associated 98.0 2.4E-06 8.1E-11 74.2 4.0 52 318-379 15-66 (170)
175 2f42_A STIP1 homology and U-bo 98.0 5.1E-06 1.7E-10 71.9 4.7 50 320-379 105-154 (179)
176 3htk_C E3 SUMO-protein ligase 98.0 1.5E-05 5.2E-10 72.4 7.6 51 318-377 178-231 (267)
177 2yu4_A E3 SUMO-protein ligase 97.9 6.1E-06 2.1E-10 64.0 4.1 53 320-377 6-62 (94)
178 4a0k_B E3 ubiquitin-protein li 97.9 1.6E-06 5.4E-11 69.6 0.5 46 320-376 47-110 (117)
179 2d8s_A Cellular modulator of i 97.8 1.5E-05 5.2E-10 59.4 4.3 51 319-378 13-70 (80)
180 1wim_A KIAA0161 protein; ring 97.8 6.5E-06 2.2E-10 63.8 1.7 52 321-375 5-61 (94)
181 3vk6_A E3 ubiquitin-protein li 97.6 2.5E-05 8.7E-10 59.4 3.1 52 323-384 3-55 (101)
182 2bay_A PRE-mRNA splicing facto 97.4 9.1E-05 3.1E-09 52.1 3.3 52 322-384 4-56 (61)
183 3k1l_B Fancl; UBC, ring, RWD, 97.2 0.00016 5.6E-09 67.9 3.5 62 318-379 305-374 (381)
184 2ct0_A Non-SMC element 1 homol 96.8 0.0027 9.1E-08 46.2 6.2 51 318-377 12-63 (74)
185 1vyx_A ORF K3, K3RING; zinc-bi 96.7 0.001 3.5E-08 46.4 3.3 50 318-376 3-57 (60)
186 2cs3_A Protein C14ORF4, MY039 93.2 0.091 3.1E-06 37.7 3.9 54 319-372 13-70 (93)
187 1weo_A Cellulose synthase, cat 92.4 0.17 6E-06 37.2 4.6 52 318-379 13-71 (93)
188 2ko5_A Ring finger protein Z; 91.0 0.098 3.3E-06 39.0 2.0 51 322-384 29-79 (99)
189 2jun_A Midline-1; B-BOX, TRIM, 85.9 0.41 1.4E-05 36.7 2.6 31 321-351 3-36 (101)
190 2d8v_A Zinc finger FYVE domain 83.7 0.89 3E-05 31.4 3.1 32 319-351 6-38 (67)
191 3nw0_A Non-structural maintena 81.7 1.5 5.1E-05 39.5 4.8 49 321-378 180-229 (238)
192 2lri_C Autoimmune regulator; Z 76.6 6.7 0.00023 27.3 5.9 48 321-375 12-59 (66)
193 2lbm_A Transcriptional regulat 72.3 5.1 0.00018 32.7 5.0 57 319-375 61-117 (142)
194 3ql9_A Transcriptional regulat 70.9 1.8 6.2E-05 34.7 1.9 58 318-375 54-111 (129)
195 2zet_C Melanophilin; complex, 67.1 0.71 2.4E-05 38.4 -1.3 47 320-376 67-118 (153)
196 1z2q_A LM5-1; membrane protein 66.7 6.7 0.00023 28.8 4.2 31 318-348 18-52 (84)
197 2l5u_A Chromodomain-helicase-D 64.6 16 0.00054 24.9 5.5 50 319-375 9-58 (61)
198 1fp0_A KAP-1 corepressor; PHD 64.3 12 0.0004 27.7 5.1 51 318-375 22-72 (88)
199 1mm2_A MI2-beta; PHD, zinc fin 62.5 7.8 0.00027 26.5 3.6 49 320-375 8-56 (61)
200 1y02_A CARP2, FYVE-ring finger 61.7 2.1 7E-05 34.0 0.5 45 321-376 19-67 (120)
201 3mkq_B Coatomer subunit alpha; 59.8 45 0.0015 28.2 8.6 133 10-183 7-140 (177)
202 3u5n_A E3 ubiquitin-protein li 58.0 5.7 0.00019 34.7 2.8 51 320-377 6-56 (207)
203 1joc_A EEA1, early endosomal a 57.3 5.1 0.00017 32.0 2.2 30 320-349 68-101 (125)
204 3o36_A Transcription intermedi 56.5 8.7 0.0003 32.8 3.7 49 321-376 4-52 (184)
205 2gmg_A Hypothetical protein PF 55.4 6.5 0.00022 30.1 2.3 14 364-377 82-95 (105)
206 2l43_A N-teminal domain from h 55.1 12 0.00042 27.6 3.8 50 318-376 22-76 (88)
207 2yw8_A RUN and FYVE domain-con 54.8 6.1 0.00021 28.8 2.1 29 320-348 18-50 (82)
208 3mkq_B Coatomer subunit alpha; 52.9 73 0.0025 26.9 8.8 99 16-139 42-141 (177)
209 1dvp_A HRS, hepatocyte growth 52.8 19 0.00066 31.6 5.5 28 321-348 161-192 (220)
210 3mpx_A FYVE, rhogef and PH dom 50.8 4.3 0.00015 39.9 0.9 54 319-376 373-430 (434)
211 1x4u_A Zinc finger, FYVE domai 50.7 14 0.00047 27.0 3.5 30 319-348 12-45 (84)
212 3t7l_A Zinc finger FYVE domain 49.3 12 0.00042 27.8 3.0 30 320-349 19-52 (90)
213 2ku3_A Bromodomain-containing 48.5 14 0.00047 26.1 3.0 51 317-376 12-67 (71)
214 3zyq_A Hepatocyte growth facto 48.4 18 0.00061 32.0 4.5 30 320-349 163-196 (226)
215 2pv0_B DNA (cytosine-5)-methyl 47.7 8.2 0.00028 37.0 2.2 64 317-381 89-155 (386)
216 1xwh_A Autoimmune regulator; P 46.6 13 0.00043 25.8 2.6 49 320-375 7-55 (66)
217 2yql_A PHD finger protein 21A; 46.2 14 0.00047 24.6 2.6 48 320-374 8-55 (56)
218 2puy_A PHD finger protein 21A; 45.5 13 0.00043 25.2 2.4 50 320-376 4-53 (60)
219 1wil_A KIAA1045 protein; ring 43.2 47 0.0016 24.2 5.1 55 318-372 12-73 (89)
220 3zrh_A Ubiquitin thioesterase 42.5 48 0.0016 31.9 6.5 63 17-103 28-90 (454)
221 1vfy_A Phosphatidylinositol-3- 42.2 16 0.00055 25.8 2.6 27 322-348 12-42 (73)
222 2ro1_A Transcription intermedi 42.1 16 0.00056 31.3 3.1 47 322-375 3-49 (189)
223 1wfk_A Zinc finger, FYVE domai 41.9 13 0.00044 27.5 2.1 54 321-378 9-66 (88)
224 2csz_A Synaptotagmin-like prot 41.2 8.1 0.00028 27.7 0.8 46 320-376 24-74 (76)
225 3a1b_A DNA (cytosine-5)-methyl 41.0 12 0.00042 31.0 2.0 60 316-376 74-135 (159)
226 1weu_A Inhibitor of growth fam 38.2 34 0.0012 25.4 3.9 16 360-375 70-85 (91)
227 2e6r_A Jumonji/ARID domain-con 37.7 23 0.00078 26.4 2.9 53 317-376 12-67 (92)
228 1gp8_A Protein (scaffolding pr 35.6 23 0.00078 21.5 2.0 19 14-32 16-34 (40)
229 1zbd_B Rabphilin-3A; G protein 34.6 15 0.00052 29.5 1.6 48 321-375 55-107 (134)
230 1uvq_C Orexin; immunology, MHC 33.8 19 0.00064 20.2 1.3 28 402-433 3-30 (33)
231 1z60_A TFIIH basal transcripti 32.2 32 0.0011 23.2 2.6 39 323-372 17-58 (59)
232 2a20_A Regulating synaptic mem 31.7 3.9 0.00013 27.5 -1.9 46 319-374 7-59 (62)
233 1wen_A Inhibitor of growth fam 31.2 36 0.0012 23.9 2.9 16 361-376 51-66 (71)
234 3c5k_A HD6, histone deacetylas 30.9 21 0.00072 27.5 1.8 25 321-345 24-48 (109)
235 1wev_A Riken cDNA 1110020M19; 30.8 13 0.00045 27.4 0.6 51 320-377 15-74 (88)
236 3vhs_A ATPase wrnip1; zinc fin 29.4 14 0.00047 20.1 0.3 10 367-376 7-16 (29)
237 6rxn_A Rubredoxin; electron tr 28.0 33 0.0011 21.9 2.0 19 363-381 27-45 (46)
238 1f62_A Transcription factor WS 27.4 90 0.0031 19.8 4.2 46 323-375 2-50 (51)
239 2k16_A Transcription initiatio 26.7 55 0.0019 23.0 3.3 51 320-377 17-70 (75)
240 3mjh_B Early endosome antigen 25.7 17 0.0006 21.5 0.3 13 367-379 6-18 (34)
241 2lze_A A primordial catalytic 25.3 75 0.0026 23.3 3.8 14 320-333 16-29 (87)
242 3i2d_A E3 SUMO-protein ligase 24.9 38 0.0013 32.2 2.7 48 322-376 250-298 (371)
243 4rxn_A Rubredoxin; electron tr 24.8 39 0.0013 22.4 2.0 20 363-382 33-52 (54)
244 3zrh_A Ubiquitin thioesterase 24.6 95 0.0032 29.9 5.3 63 90-184 30-92 (454)
245 3pwf_A Rubrerythrin; non heme 23.8 48 0.0017 27.7 2.9 16 367-382 154-169 (170)
246 2yt5_A Metal-response element- 23.2 32 0.0011 23.5 1.4 49 320-376 5-62 (66)
247 2fiy_A Protein FDHE homolog; F 22.9 17 0.00059 33.8 -0.1 53 320-384 181-239 (309)
248 2xqn_T Testin, TESS; metal-bin 22.9 76 0.0026 24.6 3.8 44 322-378 31-75 (126)
249 1yk4_A Rubredoxin, RD; electro 22.8 57 0.0019 21.3 2.5 19 364-382 33-51 (52)
250 4fo9_A E3 SUMO-protein ligase 22.5 45 0.0015 31.6 2.7 49 322-377 216-265 (360)
251 2kn9_A Rubredoxin; metalloprot 22.4 55 0.0019 23.7 2.5 20 364-383 58-77 (81)
252 1hcq_A Protein (estrogen recep 22.2 61 0.0021 23.6 2.8 28 320-350 3-30 (84)
253 2ebl_A COUP transcription fact 22.0 87 0.003 23.0 3.7 26 321-349 7-32 (89)
254 1kb2_A Vitamin D3 receptor; VD 21.9 54 0.0019 25.3 2.6 26 320-348 5-30 (110)
255 1e8j_A Rubredoxin; iron-sulfur 20.8 58 0.002 21.3 2.2 18 364-381 34-51 (52)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-41 Score=323.62 Aligned_cols=268 Identities=23% Similarity=0.261 Sum_probs=238.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
+|.|+|+.|++.|++++|++|+++|++++... +..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHH
Confidence 57899999999999999999999999886542 46789999999999999999999999 999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
+..|+.+++++|+++|+++ +..+..|+||||+|+..|+.+++++|++.+.+...... .....+..+..|.||||+|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~--~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK--TKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC--CCHHHHHTTCCCCCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc--cHHHHHhhccCCCcHHHHHH
Confidence 9999999999999999988 77788999999999999999999999999987322110 00112223888999999999
Q ss_pred HcCCHHHHHHHHHc-CCccccCCCCCCCCCChHHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618 170 RQGWSECVHTLLDN-GALACSSTGGNGYPGSTPLHFAARGGS----LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ 244 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~-ga~~~~~~~~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~ 244 (460)
..|+.+++++|++. |+ ..+..+..|.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..++.
T Consensus 157 ~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGA----DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HHTCHHHHHHHHHTSCC----CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHhcCC----CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 99999999999998 88 556778899999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhhCC-CCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618 245 ACAALLNP-SSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI 298 (460)
Q Consensus 245 ~i~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~ 298 (460)
+++++|++ .|+++. ..+..++++|+.|+..++.+.++.+++...
T Consensus 233 ~~v~~Ll~~~g~~~~----------~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 233 GLVQRLLEQEHIEIN----------DTDSDGKTALLLAVELKLKKIAELLCKRGA 277 (285)
T ss_dssp HHHHHHHHSSSCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred HHHHHHHhccCCCcc----------ccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence 99999998 788554 356678899999999999999999987643
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.6e-42 Score=324.09 Aligned_cols=228 Identities=28% Similarity=0.324 Sum_probs=183.7
Q ss_pred CCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC
Q 012618 8 RERSESALFVAVENG-------------DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g-------------~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~ 74 (460)
+..|.||||+|+..| +.+++++|+++|++++... +..|.||||+|+..|+.++|++|++. |++
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~ 82 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEA---SAD 82 (253)
T ss_dssp ---------------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHT---TCC
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc---CCC
Confidence 568999999999987 9999999999999986543 46899999999999999999999999 999
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV 154 (460)
Q Consensus 75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v 154 (460)
++..+..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+++ +
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~ 150 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------V 150 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC------------T
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC------------C
Confidence 9999999999999999999999999999999855588889999999999999999999999999988 8
Q ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 012618 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234 (460)
Q Consensus 155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp 234 (460)
+.+|..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 226 (253)
T 1yyh_A 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226 (253)
T ss_dssp TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence 9999999999999999999999999999999 556678899999999999999999999999999999999999999
Q ss_pred HHHHHHhChHHHHHhhCCCCC
Q 012618 235 YAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 235 L~~A~~~~~~~i~~~Ll~~ga 255 (460)
|++|+++|+.+++++|.....
T Consensus 227 l~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 227 RDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHHHHTTCHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHHHHHhh
Confidence 999999999999999977654
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=9.6e-41 Score=327.58 Aligned_cols=253 Identities=26% Similarity=0.297 Sum_probs=222.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC---------------
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN--------------- 74 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--------------- 74 (460)
+|.|+||.||+.|++++|++||++|++++... +..|.||||+|+..|+.++|++||++ |++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~---ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHc---CCchhhhccCCCchhHHH
Confidence 46889999999999999999999999986543 35689999999999999999999998 554
Q ss_pred ------------------CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCcccc---------CCCCCCChHHHHHHHcC
Q 012618 75 ------------------TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILN---------FDSLQGRTCLHYAAYYG 127 (460)
Q Consensus 75 ------------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~~g~t~L~~A~~~g 127 (460)
++..|..|.||||+|+..|+.+++++|++.|+++.. ..+..|.||||+|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 456677899999999999999999999999987621 23456899999999999
Q ss_pred CHHHHHHHHHh-cCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618 128 HSDCLQALLTA-ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW----SECVHTLLDNGALACSSTGGNGYPGSTPL 202 (460)
Q Consensus 128 ~~~iv~~Ll~~-~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL 202 (460)
+.++|++|++. +++ ++.+|..|.|+|+.++..+. ..++++|+++|+ +++.+|..|+|||
T Consensus 180 ~~~~v~~LL~~~gad------------~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga----d~n~~d~~g~t~L 243 (337)
T 4g8k_A 180 HVEVLKILLDEMGAD------------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGERGKTPL 243 (337)
T ss_dssp CHHHHHHHHHHSCCC------------TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTC----CTTCCCGGGCCHH
T ss_pred CHHHHHHHHhccCCC------------cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCC----CCCCcCCCCCCHH
Confidence 99999999965 666 89999999999999887554 468899999999 5566788999999
Q ss_pred HHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHH
Q 012618 203 HFAARGGSLECIRELLAW-GADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKA 281 (460)
Q Consensus 203 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a 281 (460)
|+|+..|+.++|++|++. |++++.+|..|+||||+|+..|+.+++++|+++||+++.. ++|+.|
T Consensus 244 ~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~---------------~~L~~A 308 (337)
T 4g8k_A 244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG---------------DLVMTA 308 (337)
T ss_dssp HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC---------------CHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---------------CHHHHH
Confidence 999999999999999985 8999999999999999999999999999999999977532 379999
Q ss_pred HhhhhHHHHHHhhhcc
Q 012618 282 LMESNEEREKAILNET 297 (460)
Q Consensus 282 ~~~~~~~~~~~ll~~~ 297 (460)
+...+.+.++.|++..
T Consensus 309 ~~~~~~~iv~~Ll~~G 324 (337)
T 4g8k_A 309 RRNYDHSLVKVLLSHG 324 (337)
T ss_dssp HHTTCHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHCc
Confidence 9999999999999754
No 4
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.1e-41 Score=340.63 Aligned_cols=233 Identities=30% Similarity=0.365 Sum_probs=169.8
Q ss_pred CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618 2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 80 (460)
|.++.. ++.|.||||+|+..|++++|++|+++|++++.. +..|.||||+|+..|+.++|++|+++ +++++.++.
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~ 78 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQN---KAKVNAKAK 78 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHH---TCCSSCCCT
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCC
Confidence 444443 568999999999999999999999999888543 45788999999999999999999999 999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES 160 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~ 160 (460)
.|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+.. ++..+..
T Consensus 79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------------~~~~~~~ 145 (437)
T 1n11_A 79 DDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEAS------------QACMTKK 145 (437)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SCCCCTT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------CcCCCCC
Confidence 9999999999999999999999999988 77778899999999999999999999998877 4455555
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240 (460)
Q Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~ 240 (460)
|.||||+|+..|+.+++++|+++|+ ..+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 146 g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 221 (437)
T 1n11_A 146 GFTPLHVAAKYGKVRVAELLLERDA----HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221 (437)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence 6666666666666666666666655 333344455555555555555555555555555555555555555555555
Q ss_pred hChHHHHHhhCCCCCC
Q 012618 241 YKHQACAALLNPSSAE 256 (460)
Q Consensus 241 ~~~~~i~~~Ll~~ga~ 256 (460)
.++.+++++|+++|++
T Consensus 222 ~~~~~~~~~Ll~~g~~ 237 (437)
T 1n11_A 222 QNQVEVARSLLQYGGS 237 (437)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 5555555555555553
No 5
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.9e-41 Score=313.61 Aligned_cols=227 Identities=26% Similarity=0.328 Sum_probs=205.6
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCC
Q 012618 7 CRERSESALFVAVENGDLQMIEAMVE----ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYK 82 (460)
Q Consensus 7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g 82 (460)
.++.|.||||+|+..|+.++|++|++ .+.+++. .+..|.||||+|+..|+.+++++|++. |++++..+..|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g 79 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHG 79 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTS
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--ccccCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCC
Confidence 46789999999999999999999997 6767644 346799999999999999999999999 99999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCC----ccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618 83 QTPLMVAAMNGKLSCVKKLIESGA----FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158 (460)
Q Consensus 83 ~tpL~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d 158 (460)
.||||+|+..|+.+++++|++.++ ++ +..+..|.||||+|+..|+.+++++|++.+.+ ++..+
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~ 146 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD------------IDAVD 146 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC------------ccccc
Confidence 999999999999999999999987 44 77788999999999999999999999999988 77777
Q ss_pred -CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618 159 -ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237 (460)
Q Consensus 159 -~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~ 237 (460)
..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++
T Consensus 147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~ 222 (241)
T 1k1a_A 147 IKSGRSPLIHAVENNSLSMVQLLLQHGA----NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222 (241)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence 889999999999999999999999999 556678899999999999999999999999999999999999999999
Q ss_pred HHHhChHHHHHhhCCCCC
Q 012618 238 ALKYKHQACAALLNPSSA 255 (460)
Q Consensus 238 A~~~~~~~i~~~Ll~~ga 255 (460)
|+..++.++++.|.+.++
T Consensus 223 A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 223 ARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CSSHHHHHHHTC------
T ss_pred HHhcCcHHHHhhhccCCC
Confidence 999999999999988765
No 6
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.2e-41 Score=311.67 Aligned_cols=226 Identities=27% Similarity=0.285 Sum_probs=212.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
.+.++|+.|++.|+++.|++|++.++..... .+..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhc-CCCCCCCHHHHHHHcCcHHHHHHHHHh---CCCCCCcCCCCCCHHHHH
Confidence 5789999999999999999999998776443 357899999999999999999999999 999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~ 147 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------PDAKDHYDATAMHRAA 147 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCCcHHHHHH
Confidence 9999999999999999988 77788999999999999999999999999988 7889999999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHh
Q 012618 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL 249 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~ 249 (460)
..|+.+++++|+++|+ +.+..|..|.||||+|+..++.+++++|+++|++++.+|..|+|||++|+..++.+++++
T Consensus 148 ~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l 223 (231)
T 3aji_A 148 AKGNLKMVHILLFYKA----STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223 (231)
T ss_dssp HHTCHHHHHHHHHTTC----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCC----CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence 9999999999999999 556678899999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCC
Q 012618 250 LNPSSAE 256 (460)
Q Consensus 250 Ll~~ga~ 256 (460)
|+++|++
T Consensus 224 L~~~~a~ 230 (231)
T 3aji_A 224 AEGEEAS 230 (231)
T ss_dssp HHHHHHC
T ss_pred Hcccccc
Confidence 9887763
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=326.12 Aligned_cols=263 Identities=27% Similarity=0.307 Sum_probs=199.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc---------ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc
Q 012618 7 CRERSESALFVAVENGDLQMIEAMVEADPTV---------LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA 77 (460)
Q Consensus 7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~---------~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 77 (460)
....|.|+||+|+..|+.+.+..++..++.. .....+..|.||||+|+..|+.++|++|++. +++++.
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~---g~~~~~ 87 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ---GWAVNI 87 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT---TCCSCE
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC---CCCCCC
Confidence 4567999999999999988888877654331 1123457899999999999999999999999 999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC
Q 012618 78 LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR 157 (460)
Q Consensus 78 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~ 157 (460)
+|..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++ ++.
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~- 153 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS------------VQP- 153 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SSC-
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC------------CCC-
Confidence 9999999999999999999999999999988 77788999999999999999999999999887 444
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237 (460)
Q Consensus 158 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~ 237 (460)
+..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.++|++|+++|++++. |..|.||||+
T Consensus 154 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~ 228 (285)
T 3d9h_A 154 ESDLASPIHEAARRGHVECVNSLIAYGG----NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHA 228 (285)
T ss_dssp SCTTSCHHHHHHHHTCHHHHHHHHHTTC----CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHH
Confidence 3459999999999999999999999999 5566788999999999999999999999999999995 8899999999
Q ss_pred HHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccccCCCC
Q 012618 238 ALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICSVPS 303 (460)
Q Consensus 238 A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~~~~~s 303 (460)
|+..++.+++++|+++|+++.. .+..++++|+.|. .+.+.++.+++....+.+.
T Consensus 229 A~~~~~~~~v~~Ll~~gad~~~----------~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 229 VVRTASEELACLLMDFGADTQA----------KNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 9999999999999999996654 4566778888877 3356777777664433333
No 8
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-40 Score=338.28 Aligned_cols=254 Identities=26% Similarity=0.355 Sum_probs=186.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
.|.||||+|+..|+.+++++|++++++++.. +..|.||||+|+..|+.+++++|+++ +++++..+..|.||||+|
T Consensus 145 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A 219 (437)
T 1n11_A 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPR---GGSPHSPAWNGYTPLHIA 219 (437)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGG---TCCSCCCCTTCCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCcCCCCCCHHHHH
Confidence 4555555555555555555555555554322 23455555555555555555555555 555555555555666666
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+
T Consensus 220 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------------~~~~~~~g~t~L~~A~ 286 (437)
T 1n11_A 220 AKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN------------GNLGNKSGLTPLHLVA 286 (437)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------------TTCCCTTCCCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC------------CCCCCCCCCCHHHHHH
Confidence 6666666666666655554 44455566666666666666666666665555 6888899999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHh
Q 012618 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL 249 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~ 249 (460)
..|+.+++++|+++|+ ..+..+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus 287 ~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~ 362 (437)
T 1n11_A 287 QEGHVPVADVLIKHGV----MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362 (437)
T ss_dssp HHTCHHHHHHHHHHTC----CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCc----cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHH
Confidence 9999999999999998 556677889999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhh
Q 012618 250 LNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILN 295 (460)
Q Consensus 250 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~ 295 (460)
|+++|+++.. .+.+++++|+.|...+..+..+.+..
T Consensus 363 Ll~~ga~~~~----------~~~~g~t~l~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 363 LLKNGASPNE----------VSSDGTTPLAIAKRLGYISVTDVLKV 398 (437)
T ss_dssp HHHTTCCSCC----------CCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCcCCCCC----------CCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 9999997654 45578899999999988887776654
No 9
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-40 Score=315.13 Aligned_cols=231 Identities=27% Similarity=0.306 Sum_probs=215.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.+++++|+++ |++++..+..|.||||
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~ 110 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSK---GADVNECDFYGFTAFM 110 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTCCBHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCcccCCHHH
Confidence 457899999999999999999999999998543 46899999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCC----------CCCCChHHHHHHHcCCHHHHHHHHHh-cCCCCCcccCCCcccccc
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFD----------SLQGRTCLHYAAYYGHSDCLQALLTA-ARTSPVANTWGFSRFVNI 156 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~----------~~~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~v~~ 156 (460)
+|+..|+.+++++|++.|+++ +.. +..|.||||+|+..|+.+++++|++. +.+ ++.
T Consensus 111 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------------~~~ 177 (285)
T 1wdy_A 111 EAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD------------VNA 177 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC------------TTC
T ss_pred HHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC------------CCc
Confidence 999999999999999999987 433 67899999999999999999999998 766 889
Q ss_pred CCCCCCCHHHHHHHcCC----HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCC
Q 012618 157 RDESGATPLHLAARQGW----SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFG 231 (460)
Q Consensus 157 ~d~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G 231 (460)
.|..|.||||+|+..++ .+++++|+++|+ +.+.++..|.||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 178 ~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g 253 (285)
T 1wdy_A 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253 (285)
T ss_dssp CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC----CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHccccchHHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC
Confidence 99999999999999999 999999999999 556778899999999999999999999999 899999999999
Q ss_pred CCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618 232 RIPYAIALKYKHQACAALLNPSSAEPLVW 260 (460)
Q Consensus 232 ~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~ 260 (460)
+||||+|+..++.+++++|+++|+++...
T Consensus 254 ~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 254 KTALLLAVELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred CcHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999988754
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=6.4e-42 Score=339.56 Aligned_cols=232 Identities=19% Similarity=0.211 Sum_probs=211.4
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
.+..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.++|++|++. +++++ +..|.|||
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~--~~~g~t~L 88 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASV---GEVHS--LWHGQKPI 88 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHH---CCCCC--CBTTBCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHC---CCCcc--ccCCCCHH
Confidence 3567899999999999999999999999988554 56899999999999999999999999 77655 35799999
Q ss_pred HHHHHcCCHHHHHHHHHc----CCccccC-----------------CCCCCChHHHHHHHcC--CHHHHHHHHHhcCCCC
Q 012618 87 MVAAMNGKLSCVKKLIES----GAFILNF-----------------DSLQGRTCLHYAAYYG--HSDCLQALLTAARTSP 143 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~----g~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~ 143 (460)
|+|+..|+.+++++|++. |+++ +. .+..|.||||+|+..| +.+++++|++.+++
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-- 165 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-- 165 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--
Confidence 999999999999999999 7766 33 6678999999999999 99999999999988
Q ss_pred CcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-cccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 012618 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL-ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222 (460)
Q Consensus 144 ~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 222 (460)
++.+|..|.||||+|+..|+.+++++|+++|++ .....+..|..|.||||+|+..|+.++|++|+++|+
T Consensus 166 ----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 235 (364)
T 3ljn_A 166 ----------PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235 (364)
T ss_dssp ----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred ----------CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 899999999999999999999999999999994 112267778899999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618 223 DRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258 (460)
Q Consensus 223 d~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 258 (460)
|++.+|..|+||||+|+..++.+++++|+++|+++.
T Consensus 236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~ 271 (364)
T 3ljn_A 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL 271 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred CCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence 999999999999999999999999999999987653
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=314.90 Aligned_cols=223 Identities=26% Similarity=0.340 Sum_probs=204.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
.|.||||+|+..|+.++|++|+++|++++.. +.+|.||||+|+..|+.+++++|++. |++++..|..|.||||+|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A 76 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH---GAQVNGVTADWHTPLFNA 76 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHH
Confidence 5899999999999999999999999988543 56899999999999999999999999 999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
+..|+.+++++|++.|+++ +. +..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~ 142 (261)
T 2xai_A 77 CVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIAYGGN------------IDHKISHLGTPLYLAC 142 (261)
T ss_dssp HHHTCHHHHHHHHHTTCCS-SC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCBTTTBCHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCC------------CCcCCCCCCCHHHHHH
Confidence 9999999999999999987 33 34699999999999999999999999988 8999999999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHh
Q 012618 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL 249 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~ 249 (460)
..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|+|++.+|..|+||||+|+..+ +++++
T Consensus 143 ~~~~~~~v~~Ll~~g~~~~~-----~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ 215 (261)
T 2xai_A 143 ENQQRACVKKLLESGADVNQ-----GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQL 215 (261)
T ss_dssp HTTCHHHHHHHHHHTCCTTC-----CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHH
T ss_pred HhCCHHHHHHHHHcCCCCCC-----CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHH
Confidence 99999999999999996642 678999999999999999999999999999999999999999999655 58999
Q ss_pred hCCCCCCCC
Q 012618 250 LNPSSAEPL 258 (460)
Q Consensus 250 Ll~~ga~~~ 258 (460)
|+++++.+.
T Consensus 216 ll~~~~~~~ 224 (261)
T 2xai_A 216 FLEREGPPS 224 (261)
T ss_dssp HHHC-CCCC
T ss_pred HHhccCCcc
Confidence 988877554
No 12
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.4e-40 Score=306.77 Aligned_cols=222 Identities=25% Similarity=0.326 Sum_probs=206.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++. |++++..+..|.||||
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKA---GALVDPKDAEGSTCLH 82 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT---TCCCCCCCTTSCCHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhC---CCCCCCCCCCCCcHHH
Confidence 567999999999999999999999999998554 45789999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~ 167 (460)
+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~ 150 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD------------INIRDNEENICLHW 150 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------CCccCCCCCCHHHH
Confidence 999999999999999999444478888999999999999999999999999988 78999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHH
Q 012618 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACA 247 (460)
Q Consensus 168 A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~ 247 (460)
|+..|+.+++++|+++|+ +.+..|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+.+++.+.+
T Consensus 151 A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 151 AAFSGCVDIAEILLAAKC----DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp HHHHCCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999 5566788999999999999999999999999999999999999999999999988655
Q ss_pred Hhh
Q 012618 248 ALL 250 (460)
Q Consensus 248 ~~L 250 (460)
..|
T Consensus 227 ~~l 229 (237)
T 3b7b_A 227 LQM 229 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=316.30 Aligned_cols=223 Identities=25% Similarity=0.338 Sum_probs=205.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..|.||||+|+..|+.++|++|++.|++++.. +.+|.||||+|+..|+.++|++|++. +++++..|..|.||||
T Consensus 56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~t~L~ 130 (285)
T 3d9h_A 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH---GAQVNGVTADWHTPLF 130 (285)
T ss_dssp SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSSCCCTTCCCHHH
T ss_pred CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHC---CCCCCCCCCCCCCHHH
Confidence 567999999999999999999999999988543 56899999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~ 167 (460)
+|+..|+.+++++|++.|+++ +.. ..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~~~-~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------~~~~d~~g~t~L~~ 196 (285)
T 3d9h_A 131 NACVSGSWDCVNLLLQHGASV-QPE-SDLASPIHEAARRGHVECVNSLIAYGGN------------IDHKISHLGTPLYL 196 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCS-SCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCBTTTBCHHHH
T ss_pred HHHHcCHHHHHHHHHHCCCCC-CCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC------------CCCcCCCCCCHHHH
Confidence 999999999999999999987 433 3599999999999999999999999988 89999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHH
Q 012618 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACA 247 (460)
Q Consensus 168 A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~ 247 (460)
|+..|+.+++++|+++|++++ .+..|.||||+|+..++.+++++|+++|+|++.+|..|+|||++|+ ++.+++
T Consensus 197 A~~~~~~~~v~~Ll~~ga~~~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~ 269 (285)
T 3d9h_A 197 ACENQQRACVKKLLESGADVN-----QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLA 269 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-----CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHH
T ss_pred HHHcCcHHHHHHHHHCCCCCC-----CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHH
Confidence 999999999999999999654 2678999999999999999999999999999999999999999999 456899
Q ss_pred HhhCCC-CCC
Q 012618 248 ALLNPS-SAE 256 (460)
Q Consensus 248 ~~Ll~~-ga~ 256 (460)
++|+++ |++
T Consensus 270 ~~Ll~~~~a~ 279 (285)
T 3d9h_A 270 QLFLEREGAS 279 (285)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhhccC
Confidence 999887 553
No 14
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.8e-40 Score=321.87 Aligned_cols=264 Identities=23% Similarity=0.273 Sum_probs=225.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEA-DPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
++.+.++|+.|+..|+.+.|+.|+.. +.+++. .+..|.||||+|+..|+.++|++|++. |++++..|..|.|||
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L 95 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPLHLAAGYNRVRIVQLLLQH---GADVHAKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC--SSTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCcHH
Confidence 34578999999999999999999986 445433 356899999999999999999999999 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcc--------------
Q 012618 87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSR-------------- 152 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------------- 152 (460)
|+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+++.......+...
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~ 174 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHH
Confidence 9999999999999999999988 7778899999999999999999999999998865543332211
Q ss_pred ----------------------------ccccCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618 153 ----------------------------FVNIRDESGATPLHLAARQ---GWSECVHTLLDNGALACSSTGGNGYPGSTP 201 (460)
Q Consensus 153 ----------------------------~v~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp 201 (460)
.....+..|.||||+|+.. +..+++++|+++|+ +.+..+..|.||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~ 250 (351)
T 3utm_A 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA----NVNEKNKDFMTP 250 (351)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTC----CTTCCCTTCCCH
T ss_pred hhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCC----CcCCcCCCCCCH
Confidence 1123567899999999999 55899999999999 556778899999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHH
Q 012618 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKA 281 (460)
Q Consensus 202 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a 281 (460)
||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.+++++|+++|+++.. .+..++++++.|
T Consensus 251 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----------~~~~g~tal~~a 320 (351)
T 3utm_A 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI----------ISLQGFTAAQMG 320 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC----------cCCCCCChhhhh
Confidence 9999999999999999999999999999999999999999999999999999997765 344566777766
Q ss_pred HhhhhHHHHHHhhh
Q 012618 282 LMESNEEREKAILN 295 (460)
Q Consensus 282 ~~~~~~~~~~~ll~ 295 (460)
..+..+.+.+
T Consensus 321 ----~~~~~~~l~~ 330 (351)
T 3utm_A 321 ----NEAVQQILSE 330 (351)
T ss_dssp ----CHHHHHHHHH
T ss_pred ----hHHHHHHHHh
Confidence 3444444443
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.4e-40 Score=312.99 Aligned_cols=216 Identities=24% Similarity=0.225 Sum_probs=156.9
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618 7 CRERSESALFVAVENGDLQMIEAMVEADPTVL-GMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP 85 (460)
Q Consensus 7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp 85 (460)
.+..|.||||+|++.|+.++|++|++++++.. ....+..|.||||+|+..|+.++|++|+++ |++++..+..|+||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA---GAGVLVAERGGHTA 81 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCTTSCCH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCH
Confidence 36789999999999999999999999988732 223456899999999999999999999999 99999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCcc----------------------------------------------ccCCCCCCChH
Q 012618 86 LMVAAMNGKLSCVKKLIESGAFI----------------------------------------------LNFDSLQGRTC 119 (460)
Q Consensus 86 L~~A~~~g~~~~v~~Ll~~g~~~----------------------------------------------~~~~~~~g~t~ 119 (460)
||+|+..|+.+++++|++.+++. .+..+..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 99999999999999999988652 23445566666
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCC
Q 012618 120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES-GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG 198 (460)
Q Consensus 120 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g 198 (460)
||+|+..|+.+++++|++.+++ ++.++.. |.||||+|+..|+.+++++|+++|+ +.+.+|..|
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g 225 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGAD------------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGG 225 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCC------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTS
T ss_pred HHHHHHcCCHHHHHHHHHcCCC------------CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC----CCcccccCC
Confidence 6666666666666666666665 5555533 6666666666666666666666666 444555666
Q ss_pred ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 012618 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY 241 (460)
Q Consensus 199 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~ 241 (460)
.||||+|+..|+.+++++|+++|++++.+|..|.|||++|...
T Consensus 226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence 6666666666666666666666666666666666666666543
No 16
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-41 Score=319.33 Aligned_cols=228 Identities=25% Similarity=0.259 Sum_probs=177.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc------ccCCCCCccHHHHHHHcCcH-HHHHHHHhccCCCCCCccCCC
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLG------MTSGYGKQSALHLAAAYGQI-EVLSMLLDQFFLYTNTDALNR 80 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~------~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~ 80 (460)
+.++.++|+.||..|++++|++||+.+++... ...+..+.||||+|+..++. .++++|++. |+++|..|.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~---Gadvn~~d~ 84 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS---GLGVNVTSQ 84 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C---CCCTTCCCT
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC---CCCCCCcCC
Confidence 45677899999999999999999999876421 22345688999999998875 588999999 999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES 160 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~ 160 (460)
+|+||||+|+..|+.++|++|++.|+++ +..+..|.||||+|+..++.+++++|++.+++ ++.+|..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~------------~n~~d~~ 151 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK------------PNKKDLS 151 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SCCCCTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC------------CCCCCCC
Confidence 9999999999999999999999999998 77788999999999999999999999999988 8999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240 (460)
Q Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~ 240 (460)
|.||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++
T Consensus 152 g~TpL~~A~~~g~~~~v~~Ll~~ga----dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 152 GNTPLIYACSGGHHELVALLLQHGA----SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp CCCHHHHHHHTTCGGGHHHHHHTTC----CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCC----CCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence 9999999999999999999999999 556678899999999999999999999999999999999999999999998
Q ss_pred hCh-HHHHHhhCCCCC
Q 012618 241 YKH-QACAALLNPSSA 255 (460)
Q Consensus 241 ~~~-~~i~~~Ll~~ga 255 (460)
+++ .+++++|...++
T Consensus 228 ~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 228 NSKIMELLQVVPSCVA 243 (269)
T ss_dssp TCHHHHHTTC------
T ss_pred CCcHHHHHHHHHHhch
Confidence 776 344555544444
No 17
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.2e-39 Score=298.25 Aligned_cols=218 Identities=25% Similarity=0.301 Sum_probs=198.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCC--CCCcc-CCCCCCcHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY--TNTDA-LNRYKQTPLM 87 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~--~~~~~-~~~~g~tpL~ 87 (460)
|.||||+|+..|+.++|++|++.++++... .+..|.||||+|+..|+.+++++|++. + .+++. .+..|.||||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~~~g~t~L~ 77 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSK---MENVNLDDYPDDSGWTPFH 77 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT---CTTCCGGGCCCTTSCCHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhc---cccccccccCCCCCCCHHH
Confidence 589999999999999999999999887553 357899999999999999999999999 7 55655 7889999999
Q ss_pred HHHHcCCHHHHHHHHHcC--CccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHH
Q 012618 88 VAAMNGKLSCVKKLIESG--AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L 165 (460)
+|+..|+.+++++|++.| +++ +..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.|||
T Consensus 78 ~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L 144 (228)
T 2dzn_A 78 IACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------------VRIKDKFNQIPL 144 (228)
T ss_dssp HHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------SCCCCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC------------ccccCCCCCCHH
Confidence 999999999999999998 666 77788999999999999999999999999988 899999999999
Q ss_pred HHHHHcCCHHHHHHHHHcC-CccccCCCCCCCCCChHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618 166 HLAARQGWSECVHTLLDNG-ALACSSTGGNGYPGSTPLHFAARGGSLECIRELL-AWGADRVQPDAFGRIPYAIALKYKH 243 (460)
Q Consensus 166 ~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~G~tpL~~A~~~~~ 243 (460)
|+|+..|+.+++++|+++| + +.+..|..|+||||+|+..|+.+++++|+ ++|++++.+|..|+|||++|+..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~g~~----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~-- 218 (228)
T 2dzn_A 145 HRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-- 218 (228)
T ss_dssp HHHHHTTCHHHHHHHHTTTCC----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST--
T ss_pred HHHHHcCCHHHHHHHHhcCcc----cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH--
Confidence 9999999999999999999 7 56677889999999999999999999999 89999999999999999999765
Q ss_pred HHHHHhhCC
Q 012618 244 QACAALLNP 252 (460)
Q Consensus 244 ~~i~~~Ll~ 252 (460)
+++++|++
T Consensus 219 -~~~~~l~~ 226 (228)
T 2dzn_A 219 -QVKKFFLN 226 (228)
T ss_dssp -THHHHHHT
T ss_pred -HHHHHHHh
Confidence 45555544
No 18
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-40 Score=331.49 Aligned_cols=260 Identities=18% Similarity=0.218 Sum_probs=225.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHH--------hccCCCCCCccCC
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL--------DQFFLYTNTDALN 79 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~ 79 (460)
+..|.|+||+|+..|+ +++++|+..+.+. . ++..|.||||+|+..|+.+++++|+ +. |+++|..|
T Consensus 91 ~~~g~t~L~~Aa~~~~-~~~~~L~~~~~n~--~-d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~---ga~vn~~d 163 (373)
T 2fo1_E 91 EPESPIKLHTEAAGSY-AITEPITRESVNI--I-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA---GADVNAMD 163 (373)
T ss_dssp ---CCCHHHHHHHSSS-CCCSCCSTTTTTT--C-CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT---CCCTTCCC
T ss_pred CCCCccHHHHHhcCCc-hHHHHhccccccc--c-CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc---CCCCcCCC
Confidence 5678999999999554 7888887643332 2 2257899999999999998887776 67 99999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhc---CCCCCcccCCCcccccc
Q 012618 80 RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA---RTSPVANTWGFSRFVNI 156 (460)
Q Consensus 80 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~~~~~v~~ 156 (460)
..|.||||+|+..|+.++|++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+ .+ ++.
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~ 230 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD------------IEE 230 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT------------TSC
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC------------hhh
Confidence 99999999999999999999999999998 777889999999999999999999999887 45 788
Q ss_pred CCCCCCCHHHHHHHcC---CHHHHHHHHHcCCccccC----CCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCC
Q 012618 157 RDESGATPLHLAARQG---WSECVHTLLDNGALACSS----TGGNGYPGSTPLHFAARGGSLECIRELLAWG-ADRVQPD 228 (460)
Q Consensus 157 ~d~~g~t~L~~A~~~g---~~~~v~~Ll~~ga~~~~~----~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d 228 (460)
.|..|.||||+|+..+ +.+++++|+++|++++.. .+..|..|.||||+|+..|+.++|++|+++| ++++.+|
T Consensus 231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d 310 (373)
T 2fo1_E 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310 (373)
T ss_dssp CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC
T ss_pred cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcC
Confidence 9999999999999998 899999999999976542 2346778999999999999999999999886 9999999
Q ss_pred CCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618 229 AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET 297 (460)
Q Consensus 229 ~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~ 297 (460)
..|+||||+|+..|+.+++++|+++|+++.. .+..++++|+.|+..++.+.++.|++..
T Consensus 311 ~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~----------~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----------VDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----------CCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccC----------CCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999999999999999999999996654 4556789999999999999999988643
No 19
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.3e-40 Score=325.79 Aligned_cols=234 Identities=19% Similarity=0.217 Sum_probs=210.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618 9 ERSESALFVAVENGDLQMIEAMV--------EADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80 (460)
Q Consensus 9 ~~g~t~L~~Aa~~g~~~~vk~Ll--------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 80 (460)
..|.||||+|+..|+.++|++|+ +.|++++.. +..|.||||+|+..|+.++|++|++. |++++..+.
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~---ga~~~~~~~ 197 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA---GADPTIYNK 197 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCT
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHC---CCCCcccCC
Confidence 57999999999999998888876 789888554 56899999999999999999999999 999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC---CccccCCCCCCChHHHHHHHcC---CHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESG---AFILNFDSLQGRTCLHYAAYYG---HSDCLQALLTAARTSPVANTWGFSRFV 154 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~v 154 (460)
.|.||||+|+..|+.+++++|++.+ +++ +..+..|.||||+|+..+ +.+++++|++.+++...... ...
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~----~~~ 272 (373)
T 2fo1_E 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA----ARK 272 (373)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG----GGT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc----ccc
Confidence 9999999999999999999999987 565 777889999999999998 89999999999988432110 113
Q ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 012618 155 NIRDESGATPLHLAARQGWSECVHTLLDNG-ALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI 233 (460)
Q Consensus 155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~t 233 (460)
+..|..|.||||+|+..|+.++|++|++++ + +.+..|..|.||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus 273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t 348 (373)
T 2fo1_E 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 348 (373)
T ss_dssp SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCC
T ss_pred CcccccCCCHHHHHHHhCCHHHHHHHHHhcCC----CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCC
Confidence 447889999999999999999999999886 7 66778889999999999999999999999999999999999999
Q ss_pred HHHHHHHhChHHHHHhhCCCCCC
Q 012618 234 PYAIALKYKHQACAALLNPSSAE 256 (460)
Q Consensus 234 pL~~A~~~~~~~i~~~Ll~~ga~ 256 (460)
||++|+.+++.+++++|++++++
T Consensus 349 ~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 349 ARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHHHcCCHHHHHHHHhcCcc
Confidence 99999999999999999999874
No 20
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2e-39 Score=298.73 Aligned_cols=217 Identities=28% Similarity=0.321 Sum_probs=201.2
Q ss_pred cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 012618 21 NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKK 100 (460)
Q Consensus 21 ~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 100 (460)
.|+.+++++|+++|++++... +.+|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+..|+.+++++
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp ----CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 378899999999999986543 46899999999999999999999999 99999999999999999999999999999
Q ss_pred HHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 012618 101 LIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180 (460)
Q Consensus 101 Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~L 180 (460)
|++.++...+..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|
T Consensus 77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~L 144 (223)
T 2f8y_A 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALHWAAAVNNVDAAVVL 144 (223)
T ss_dssp HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC------------CcCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 99999865588889999999999999999999999999988 889999999999999999999999999
Q ss_pred HHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCC
Q 012618 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257 (460)
Q Consensus 181 l~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~ 257 (460)
+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|+..
T Consensus 145 l~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 145 LKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHTTC----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHcCC----CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 99999 55667889999999999999999999999999999999999999999999999999999999999854
No 21
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.1e-38 Score=310.90 Aligned_cols=234 Identities=23% Similarity=0.225 Sum_probs=204.7
Q ss_pred CCccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-------------------------------cCCCCCcc
Q 012618 2 GQRMSCR--ERSESALFVAVENGDLQMIEAMVEADPTVLGM-------------------------------TSGYGKQS 48 (460)
Q Consensus 2 g~~~~~~--~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~-------------------------------~~~~~g~t 48 (460)
|.+++.. +.|.||||+|+..|+.++|++||++|++++.. ..+..|.|
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t 127 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence 5666643 35899999999999999999999999876432 23467899
Q ss_pred HHHHHHHcCcHHHHHHHHhccCCCCCCccC----------CCCCCcHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCC
Q 012618 49 ALHLAAAYGQIEVLSMLLDQFFLYTNTDAL----------NRYKQTPLMVAAMNGKLSCVKKLIE-SGAFILNFDSLQGR 117 (460)
Q Consensus 49 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~----------~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~ 117 (460)
|||+|+..|+.+++++|+++ |++++.. +..|.||||+|+..|+.++|++||+ .|+++ +..+..|+
T Consensus 128 ~l~~A~~~~~~~~~~~ll~~---ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~ 203 (337)
T 4g8k_A 128 AFMEAAVYGKVKALKFLYKR---GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGR 203 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHT---TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSC
T ss_pred HHHHHHHcCcHHHHHHHHHc---CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCC
Confidence 99999999999999999999 8877653 4568999999999999999999996 58887 78888999
Q ss_pred hHHHHHHHcCC----HHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCccccCCC
Q 012618 118 TCLHYAAYYGH----SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN-GALACSSTG 192 (460)
Q Consensus 118 t~L~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~ 192 (460)
|+|++++..+. ..++++|++.|++ +|.+|..|.||||+|+..|+.+++++|++. |+ +++
T Consensus 204 t~l~~~~~~~~~~~~~~i~~lLl~~gad------------~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~----~vn 267 (337)
T 4g8k_A 204 NALIHALLSSDDSDVEAITHLLLDHGAD------------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EIN 267 (337)
T ss_dssp CHHHHHHHHSCTTTHHHHHHHHHHTTCC------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC----CTT
T ss_pred cHHHHHHHHcCcccHHHHHHHHHHCCCC------------CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC----ccc
Confidence 99999887654 4688999999998 899999999999999999999999999985 67 567
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW 260 (460)
Q Consensus 193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~ 260 (460)
.+|..|+||||+|++.|+.++|++||++|+|+|.. +|||+|+.+++.+++++|+++||++++.
T Consensus 268 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 268 DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 77889999999999999999999999999999764 6999999999999999999999998764
No 22
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=296.06 Aligned_cols=230 Identities=25% Similarity=0.288 Sum_probs=208.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC-CCCCc
Q 012618 6 SCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN-RYKQT 84 (460)
Q Consensus 6 ~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~~g~t 84 (460)
..++.|.++|+.|++.|+.+++++|++.|.+++.. +..|.||||+|+..|+.+++++|++. +.+++..+ ..|.|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISK---GAIVDQLGGDLNST 78 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCBTTTTBC
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHc---CCcchhhcCCcCCC
Confidence 34678899999999999999999999999988543 46799999999999999999999999 88887555 44999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618 85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164 (460)
Q Consensus 85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~ 164 (460)
|||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~------------~~~~~~~g~t~ 145 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD------------VDMMDQNGMTP 145 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCH
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC------------ccccCCCCCcH
Confidence 999999999999999999999988 77788999999999999999999999999887 78999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHcCCccccCCCCCCC-CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618 165 LHLAARQGW-SECVHTLLDNGALACSSTGGNGY-PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK 242 (460)
Q Consensus 165 L~~A~~~g~-~~~v~~Ll~~ga~~~~~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~ 242 (460)
||+|+..+. .+++++|++.|+++ +..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+
T Consensus 146 l~~a~~~~~~~~~~~~L~~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 221 (240)
T 3eu9_A 146 LMWAAYRTHSVDPTRLLLTFNVSV----NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221 (240)
T ss_dssp HHHHHHHCCSSTTHHHHHHTTCCT----TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred HHHHHHhCChHHHHHHHHhcCCCc----chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 999997766 89999999999944 44454 7999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCCCCC
Q 012618 243 HQACAALLNPSSAEP 257 (460)
Q Consensus 243 ~~~i~~~Ll~~ga~~ 257 (460)
+.+++++|++++++.
T Consensus 222 ~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 222 NVWMINHLQEARQAK 236 (240)
T ss_dssp CHHHHHHHHHHC---
T ss_pred cHHHHHHHHHhhhcc
Confidence 999999999988754
No 23
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.2e-39 Score=301.98 Aligned_cols=228 Identities=23% Similarity=0.228 Sum_probs=179.5
Q ss_pred CCCCCccHHHHHHHcC-------------cHHHHHHHHhccCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCc
Q 012618 42 SGYGKQSALHLAAAYG-------------QIEVLSMLLDQFFLYTNTDA-LNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107 (460)
Q Consensus 42 ~~~~g~t~Lh~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 107 (460)
.+.+|.||||+|+..| +.+++++|++. +++++. .|..|.||||+|+..|+.+++++|++.|++
T Consensus 6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~---g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ---GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc---cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3568999999999987 89999999999 888865 589999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 012618 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALA 187 (460)
Q Consensus 108 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 187 (460)
+ +..+..|+||||+|+..|+.+++++|++.+... ++.++..|.||||+|+..|+.+++++|+++|+
T Consensus 83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-- 148 (253)
T 1yyh_A 83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-----------LDARMHDGTTPLILAARLAVEGMLEDLINSHA-- 148 (253)
T ss_dssp T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC-----------TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC--
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------ccccCCCCCcHHHHHHHcChHHHHHHHHHcCC--
Confidence 8 777889999999999999999999999998732 78899999999999999999999999999999
Q ss_pred ccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCccccccccc
Q 012618 188 CSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNM 267 (460)
Q Consensus 188 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~ 267 (460)
+.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++..
T Consensus 149 --~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-------- 218 (253)
T 1yyh_A 149 --DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-------- 218 (253)
T ss_dssp --CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--------
T ss_pred --CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc--------
Confidence 5566778899999999999999999999999999999999999999999999999999999999996654
Q ss_pred CCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618 268 TDLNPEAKELLEKALMESNEEREKAILNETI 298 (460)
Q Consensus 268 ~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~ 298 (460)
.+..++++|+.|...++.+.++.+.....
T Consensus 219 --~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 219 --TDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp --CCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred --cccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 46678899999999999999999876544
No 24
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.9e-38 Score=306.75 Aligned_cols=223 Identities=26% Similarity=0.342 Sum_probs=203.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.+++++|+++ |++++..|..|.||||
T Consensus 55 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~---g~~~~~~~~~g~t~L~ 129 (351)
T 3utm_A 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKH---GACVNAMDLWQFTPLH 129 (351)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHH
Confidence 567999999999999999999999999998554 56899999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCcccc-----------------------------------------------------CCCC
Q 012618 88 VAAMNGKLSCVKKLIESGAFILN-----------------------------------------------------FDSL 114 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~-----------------------------------------------------~~~~ 114 (460)
+|+..|+.+++++|+++|+++.. ..+.
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (351)
T 3utm_A 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence 99999999999999999988622 1235
Q ss_pred CCChHHHHHHHc---CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCC
Q 012618 115 QGRTCLHYAAYY---GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191 (460)
Q Consensus 115 ~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 191 (460)
.|.||||+|+.. +..+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|+ ++
T Consensus 210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~ 273 (351)
T 3utm_A 210 SHETALHCAVASLHPKRKQVAELLLRKGAN------------VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----KM 273 (351)
T ss_dssp TCCCHHHHHHHCCSTTHHHHHHHHHHTTCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CT
T ss_pred CCCCHHHHHHHHhCccHHHHHHHHHHcCCC------------cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CC
Confidence 678999999999 558999999999988 89999999999999999999999999999999 56
Q ss_pred CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 192 GGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 192 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
+..|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||+++| ..+++++|.+.+.
T Consensus 274 n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~ 333 (351)
T 3utm_A 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTP 333 (351)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhccc
Confidence 67788999999999999999999999999999999999999999998 5678888877654
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.1e-38 Score=291.53 Aligned_cols=226 Identities=30% Similarity=0.395 Sum_probs=206.5
Q ss_pred ccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChH
Q 012618 40 MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC 119 (460)
Q Consensus 40 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~ 119 (460)
...+.+|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 80 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA---GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC 80 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHc---CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence 34567899999999999999999999999 9999999999999999999999999999999999987 7778899999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCC
Q 012618 120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS 199 (460)
Q Consensus 120 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~ 199 (460)
||+|+..|+.+++++|++.+... ++..+..|.||||+|+..++.+++++|+++|+ +.+..+..|.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~ 145 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMD-----------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS----DINIRDNEEN 145 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-----------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCccCCCCC
Confidence 99999999999999999998432 78899999999999999999999999999999 5566788999
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHH
Q 012618 200 TPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLE 279 (460)
Q Consensus 200 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~ 279 (460)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++.. .+..|+++|+
T Consensus 146 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----------~d~~g~t~l~ 215 (237)
T 3b7b_A 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL----------KNKEGETPLQ 215 (237)
T ss_dssp CHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----------CCTTSCCHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----------cCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999997654 4667889999
Q ss_pred HHHhhhhHHHHHHhh
Q 012618 280 KALMESNEEREKAIL 294 (460)
Q Consensus 280 ~a~~~~~~~~~~~ll 294 (460)
.|....+......++
T Consensus 216 ~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 216 CASLNSQVWSALQMS 230 (237)
T ss_dssp HSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888765554444
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.5e-38 Score=301.51 Aligned_cols=226 Identities=28% Similarity=0.274 Sum_probs=188.0
Q ss_pred CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC---CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCh
Q 012618 42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN---TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT 118 (460)
Q Consensus 42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t 118 (460)
.+.+|.||||+|+..|+.++|++|++. +++ ++..+..|+||||+|+..|+.+++++|+++|+++ +..+..|+|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHH---HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhc---CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 356899999999999999999999998 776 8889999999999999999999999999999998 777889999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCcccC-----------------------------------CCccccccCCCCCCC
Q 012618 119 CLHYAAYYGHSDCLQALLTAARTSPVANTW-----------------------------------GFSRFVNIRDESGAT 163 (460)
Q Consensus 119 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-----------------------------------~~~~~v~~~d~~g~t 163 (460)
|||+|+..|+.+++++|++.++........ .....++.++..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999987653221110 112337888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC-CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGY-PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK 242 (460)
Q Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~ 242 (460)
|||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..+
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADL----NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC----CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence 999999999999999999999944 44443 4999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618 243 HQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES 285 (460)
Q Consensus 243 ~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~ 285 (460)
+.+++++|+++|+++. ..+..+.++|+.+....
T Consensus 237 ~~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 237 NPILARLLRAHGAPEP----------EDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CHHHHHHHHHTTCCCC----------CCC--------------
T ss_pred CcHHHHHHHHcCCCcC----------cCCCcccccccccCCcc
Confidence 9999999999999655 46778889988776443
No 27
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.5e-38 Score=294.57 Aligned_cols=229 Identities=25% Similarity=0.256 Sum_probs=203.1
Q ss_pred CCCCCccHHHHHHHcCcHHHHHHHHh----ccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC
Q 012618 42 SGYGKQSALHLAAAYGQIEVLSMLLD----QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR 117 (460)
Q Consensus 42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~ 117 (460)
.+.+|.||||+|+..|+.+++++|++ . +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 80 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG---GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ 80 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhc---CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence 35689999999999999999999997 5 8899999999999999999999999999999999988 67788999
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCC-C
Q 012618 118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG-Y 196 (460)
Q Consensus 118 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d-~ 196 (460)
||||+|+..|+.+++++|++.+..... .++..+..|.||||+|+..|+.+++++|+++|++ .+..+ .
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~ 148 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTL--------DLEARNYDGLTALHVAVNTECQETVQLLLERGAD----IDAVDIK 148 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccc--------cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC----ccccccc
Confidence 999999999999999999999873211 1788999999999999999999999999999994 44455 6
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHH
Q 012618 197 PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKE 276 (460)
Q Consensus 197 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 276 (460)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++.. .+..+++
T Consensus 149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t 218 (241)
T 1k1a_A 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----------KNCHNDT 218 (241)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----------cCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999997654 4556778
Q ss_pred HHHHHHhhhhHHHHHHhhhc
Q 012618 277 LLEKALMESNEEREKAILNE 296 (460)
Q Consensus 277 ~L~~a~~~~~~~~~~~ll~~ 296 (460)
+|+.|...+..+..+.++..
T Consensus 219 pl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 219 PLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp TTTTCSSHHHHHHHTC----
T ss_pred HHHHHHhcCcHHHHhhhccC
Confidence 88888888888888777654
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-38 Score=303.05 Aligned_cols=233 Identities=23% Similarity=0.231 Sum_probs=199.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..|.|+|+.|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.++|++|++. |++++..|..|.||||
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~tpL~ 111 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN---GANINQPDNEGWIPLH 111 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCcHHH
Confidence 346789999999999999999999999998554 46799999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccC---------------CCcc
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW---------------GFSR 152 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------------~~~~ 152 (460)
+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+............ ....
T Consensus 112 ~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (299)
T 1s70_B 112 AAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190 (299)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence 999999999999999999998 777889999999999999999999888754321000000 0000
Q ss_pred ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618 153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232 (460)
Q Consensus 153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~ 232 (460)
.....+..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus 191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~ 266 (299)
T 1s70_B 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY----DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266 (299)
T ss_dssp CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 123456789999999999999999999999999 5567788999999999999999999999999999999999999
Q ss_pred CHHHHHHHhChHHHHHhh
Q 012618 233 IPYAIALKYKHQACAALL 250 (460)
Q Consensus 233 tpL~~A~~~~~~~i~~~L 250 (460)
|||++|.+.....+.+++
T Consensus 267 t~l~~A~~~~~~~l~~l~ 284 (299)
T 1s70_B 267 TAFDVADEDILGYLEELQ 284 (299)
T ss_dssp CTTTSCCSGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999765444444444
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-38 Score=304.89 Aligned_cols=194 Identities=19% Similarity=0.119 Sum_probs=97.2
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
.+|.||||+|+..|+.++|++|++. |++++..+ |+||||+|+..|+.+++++|+++|+++ +..+..|+||||+|
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A 102 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLNA---GALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYA 102 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHT---TGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHH
Confidence 3445555555555555555555554 44444442 455555555555555555555555544 33444555555555
Q ss_pred HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC-CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618 124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG-ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202 (460)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL 202 (460)
+..|+.+++++|++.+++ ++.++..| .||||+|+..|+.+++++|+++|++... ...|.|||
T Consensus 103 ~~~g~~~~v~~Ll~~ga~------------~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----~~~g~t~L 165 (285)
T 3kea_A 103 VDSGNMQTVKLFVKKNWR------------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-----LAILLSCI 165 (285)
T ss_dssp HHTTCHHHHHHHHHHCGG------------GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC-----CSTHHHHH
T ss_pred HHcCCHHHHHHHHhcCCC------------CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-----ccCCccHH
Confidence 555555555555555444 44455555 4555555555555555555555542210 01345555
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIP-YAIALKYKHQACAALLNPSSAEPLVW 260 (460)
Q Consensus 203 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp-L~~A~~~~~~~i~~~Ll~~ga~~~~~ 260 (460)
|+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..++.+++++|+++|+++...
T Consensus 166 ~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred HHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 55555555555555555555555555555554 55555555555555555555554443
No 30
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=293.91 Aligned_cols=217 Identities=30% Similarity=0.353 Sum_probs=193.4
Q ss_pred CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA 124 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~ 124 (460)
+|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ---GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence 578999999999999999999999 9999999999999999999999999999999999988 778889999999999
Q ss_pred HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH
Q 012618 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204 (460)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~ 204 (460)
..|+.+++++|++.+++ ++. +..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+
T Consensus 78 ~~~~~~~v~~Ll~~g~~------------~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~ 140 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGAS------------VQP-ESDLASPIHEAARRGHVECVNSLIAYGG----NIDHKISHLGTPLYL 140 (261)
T ss_dssp HHTCHHHHHHHHHTTCC------------SSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCBTTTBCHHHH
T ss_pred HcCCHHHHHHHHHCCCC------------CCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCCcCCCCCCCHHHH
Confidence 99999999999999987 443 4569999999999999999999999999 556678899999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhh
Q 012618 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALME 284 (460)
Q Consensus 205 A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~ 284 (460)
|+..|+.+++++|+++|++++. |..|.||||+|+..++.+++++|+++|+++.. .+..|+++|+.|...
T Consensus 141 A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~----------~d~~g~tpl~~A~~~ 209 (261)
T 2xai_A 141 ACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQA----------KNAEGKRPVELVPPE 209 (261)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGSCTT
T ss_pred HHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCChhhhcccc
Confidence 9999999999999999999996 89999999999999999999999999997665 445666677766643
Q ss_pred hhHHHHHHhhh
Q 012618 285 SNEEREKAILN 295 (460)
Q Consensus 285 ~~~~~~~~ll~ 295 (460)
. +..+.+++
T Consensus 210 ~--~~~~~ll~ 218 (261)
T 2xai_A 210 S--PLAQLFLE 218 (261)
T ss_dssp C--THHHHHHH
T ss_pred c--cHHHHHHh
Confidence 3 34555554
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.9e-37 Score=297.33 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=200.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..|.||||+|+..|+.++|++|+++|++++.. +|.||||+|+..|+.+++++|+++ |++++.+|..|.||||
T Consensus 28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS---GLDDSQFDDKGNTALY 100 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCcHHH
Confidence 568999999999999999999999999988554 589999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC-CCCCHH
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQG-RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE-SGATPL 165 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~-~g~t~L 165 (460)
+|+..|+.+++++|++.|+++ +..+..| .||||+|+..|+.+++++|++.+++. .+. .|.|||
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------~~~~~g~t~L 165 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------FDLAILLSCI 165 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--------------CCCSTHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--------------ccccCCccHH
Confidence 999999999999999999998 6777788 79999999999999999999998762 222 899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH-HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP-LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ 244 (460)
Q Consensus 166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~ 244 (460)
|+|+..|+.+++++|+++|+ +.+..|..|.|| ||+|+..|+.+++++|+++|++++..|. .|+..++.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~ga----d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~ 234 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDYMT----STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDA 234 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCH
T ss_pred HHHHHcChHHHHHHHHHcCC----CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCH
Confidence 99999999999999999999 556678889998 9999999999999999999999999883 56779999
Q ss_pred HHHHhhCCCCCCCCc
Q 012618 245 ACAALLNPSSAEPLV 259 (460)
Q Consensus 245 ~i~~~Ll~~ga~~~~ 259 (460)
+++++|+++|++...
T Consensus 235 ~iv~~Ll~~g~~~~~ 249 (285)
T 3kea_A 235 EIAKMIIEKHVEYKS 249 (285)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCC
Confidence 999999999986543
No 32
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.5e-37 Score=282.65 Aligned_cols=224 Identities=25% Similarity=0.238 Sum_probs=204.6
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
..+.+|||.|+..|+.+++++|++.. ...++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 80 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILAD--KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHC--GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhc--hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence 34679999999999999999999872 3346778999999999999999999999999999988 77788999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618 124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203 (460)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh 203 (460)
+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|+ +.+..+..|.||||
T Consensus 81 ~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~ 144 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAH------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA----NPDAKDHYDATAMH 144 (231)
T ss_dssp HHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHH
T ss_pred HHcCHHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCcHHH
Confidence 999999999999999988 78899999999999999999999999999999 55667888999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHh
Q 012618 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALM 283 (460)
Q Consensus 204 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~ 283 (460)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++.. .+..++++|+.|..
T Consensus 145 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~ 214 (231)
T 3aji_A 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI----------ENKEEKTPLQVAKG 214 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCTTSCCHHHHSCH
T ss_pred HHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999996653 45678899999988
Q ss_pred hhhHHHHHHhhhc
Q 012618 284 ESNEEREKAILNE 296 (460)
Q Consensus 284 ~~~~~~~~~ll~~ 296 (460)
..+.+..+.+++.
T Consensus 215 ~~~~~i~~lL~~~ 227 (231)
T 3aji_A 215 GLGLILKRLAEGE 227 (231)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccc
Confidence 8888887777653
No 33
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.3e-37 Score=306.78 Aligned_cols=237 Identities=19% Similarity=0.162 Sum_probs=207.5
Q ss_pred cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHH
Q 012618 41 TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120 (460)
Q Consensus 41 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L 120 (460)
..+.+|.||||+|+..|+.++|++||+. |++++..|..|.||||+|+..|+.++|++|++.|+++ .+..|.|||
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L 88 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIET---GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPI 88 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHH
Confidence 3456789999999999999999999999 9999999999999999999999999999999999955 334799999
Q ss_pred HHHHHcCCHHHHHHHHHh----cCCCCCcccC-----CCccccccCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCcccc
Q 012618 121 HYAAYYGHSDCLQALLTA----ARTSPVANTW-----GFSRFVNIRDESGATPLHLAARQG--WSECVHTLLDNGALACS 189 (460)
Q Consensus 121 ~~A~~~g~~~iv~~Ll~~----~~~~~~~~~~-----~~~~~v~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~ 189 (460)
|+|+..|+.+++++|++. +.+....... -....++..|..|.||||+|+..| +.++|++|+++|+
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga---- 164 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA---- 164 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC----
Confidence 999999999999999998 5542110000 000113448889999999999999 9999999999999
Q ss_pred CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccc
Q 012618 190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-----RVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQL 264 (460)
Q Consensus 190 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~ 264 (460)
+++..|..|.||||+|+..|+.++|++|+++|++ ++..|..|+||||+|+..++.+++++|+++|+++..
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~----- 239 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM----- 239 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC-----
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-----
Confidence 5567788999999999999999999999999999 999999999999999999999999999999997654
Q ss_pred cccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618 265 RNMTDLNPEAKELLEKALMESNEEREKAILNET 297 (460)
Q Consensus 265 ~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~ 297 (460)
.+..+.++|+.|+..++.+.++.|++..
T Consensus 240 -----~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 267 (364)
T 3ljn_A 240 -----EDNEHTVPLYLSVRAAMVLLTKELLQKT 267 (364)
T ss_dssp -----CCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred -----CCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence 4567889999999999999999999764
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-36 Score=281.05 Aligned_cols=210 Identities=25% Similarity=0.232 Sum_probs=188.1
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCc-cCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CccccCCCCCCChHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTD-ALNRYKQTPLMVAAMNGKLSCVKKLIESG--AFILNFDSLQGRTCLHY 122 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~ 122 (460)
|+||||+|+..|+.++|++|++. +.++. ..+..|.||||+|+..|+.+++++|++.| .++....+..|+||||+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhc---CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHH
Confidence 57999999999999999999998 66554 48899999999999999999999999999 66644477899999999
Q ss_pred HHHcCCHHHHHHHHHhc--CCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCCh
Q 012618 123 AAYYGHSDCLQALLTAA--RTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST 200 (460)
Q Consensus 123 A~~~g~~~iv~~Ll~~~--~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~T 200 (460)
|+..|+.+++++|++.+ .+ ++..+..|.||||+|+..|+.+++++|+++|+ +.+..+..|.|
T Consensus 79 A~~~~~~~~~~~Ll~~g~~~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t 142 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPLKPD------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA----SVRIKDKFNQI 142 (228)
T ss_dssp HHHHCCHHHHHHHHSSSSCCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCC
T ss_pred HHHcCCHHHHHHHHhCCCCcc------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----CccccCCCCCC
Confidence 99999999999999998 44 78899999999999999999999999999999 55677889999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHHHhhC-CCCCCCCcccccccccCCCCHHHHHHH
Q 012618 201 PLHFAARGGSLECIRELLAWG-ADRVQPDAFGRIPYAIALKYKHQACAALLN-PSSAEPLVWPLQLRNMTDLNPEAKELL 278 (460)
Q Consensus 201 pLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~L 278 (460)
|||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++++|+ ++|+++... +..++++|
T Consensus 143 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~----------~~~g~t~l 212 (228)
T 2dzn_A 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV----------DNKGAKAE 212 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB----------CTTSCBGG
T ss_pred HHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc----------CCCCCcHH
Confidence 999999999999999999999 999999999999999999999999999999 899977653 44555666
Q ss_pred HHHHhh
Q 012618 279 EKALME 284 (460)
Q Consensus 279 ~~a~~~ 284 (460)
+.|...
T Consensus 213 ~~A~~~ 218 (228)
T 2dzn_A 213 DVALNE 218 (228)
T ss_dssp GGCSST
T ss_pred HHHHHH
Confidence 666443
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1e-36 Score=293.28 Aligned_cols=244 Identities=20% Similarity=0.222 Sum_probs=209.3
Q ss_pred HHHHHcCCHHHHHHHHHcCCCccccc-------CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618 16 FVAVENGDLQMIEAMVEADPTVLGMT-------SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV 88 (460)
Q Consensus 16 ~~Aa~~g~~~~vk~Ll~~~~~~~~~~-------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~ 88 (460)
+.++..+..+.++.++.....+.... .+.+|.||||.|+..|+.++|++|++. |++++..|..|.||||+
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~ 79 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER---GADINYANVDGLTALHQ 79 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH---CCCTTCBCTTCCBHHHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHH
Confidence 35788889999999998766543211 123578999999999999999999999 99999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH
Q 012618 89 AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168 (460)
Q Consensus 89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A 168 (460)
|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++ ++..+..|.||||+|
T Consensus 80 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~g~t~l~~A 146 (299)
T 1s70_B 80 ACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH------------VGAVNSEGDTPLDIA 146 (299)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHC
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------CCCcCCCCCCHHHHH
Confidence 99999999999999999998 77788999999999999999999999999988 788999999999999
Q ss_pred HHcCCHHHHHHHHHc-CCccc----------------------cCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618 169 ARQGWSECVHTLLDN-GALAC----------------------SSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225 (460)
Q Consensus 169 ~~~g~~~~v~~Ll~~-ga~~~----------------------~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 225 (460)
+..++.+++++|+.. |.+++ ......+..|.||||+|+..|+.++|++|+++|++++
T Consensus 147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~ 226 (299)
T 1s70_B 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226 (299)
T ss_dssp CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 999999999887753 33221 1223345679999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618 226 QPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES 285 (460)
Q Consensus 226 ~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~ 285 (460)
.+|..|.||||+|+..++.+++++|+++|+++... +..++++|+.|....
T Consensus 227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~----------d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV----------NKVGQTAFDVADEDI 276 (299)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------CTTSCCTTTSCCSGG
T ss_pred CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc----------CCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999977653 445556666664433
No 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.7e-36 Score=277.39 Aligned_cols=207 Identities=23% Similarity=0.227 Sum_probs=156.1
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccc----cCCCCCCChHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL----NFDSLQGRTCLH 121 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~----~~~~~~g~t~L~ 121 (460)
|.||||+|+..|+.++|++|++.. +++++.+|..|+||||+|+..|+.+++++|++.|+++. +..+..|+||||
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFE--GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTT--CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhc--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 556777777777777777666642 56666666667777777777777777777777666542 333456677777
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCcccC-CCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCCh
Q 012618 122 YAAYYGHSDCLQALLTAARTSPVANTW-GFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST 200 (460)
Q Consensus 122 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~T 200 (460)
+|+..|+.+++++|++.+++....... .+....+..|..|.||||+|+..|+.+++++|+++|+ +.+.+|..|.|
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~t 156 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA----DIRAQDSLGNT 156 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCC
Confidence 777777777777777766653221110 0111134456689999999999999999999999999 56677889999
Q ss_pred HHHHHHhcCCHHHH----HHHHHcCCCC------CCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618 201 PLHFAARGGSLECI----RELLAWGADR------VQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258 (460)
Q Consensus 201 pLh~A~~~g~~~~v----~~Ll~~gad~------~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 258 (460)
|||+|+..++.+++ ++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|++..
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 99999999999988 9999999998 5899999999999999999999999999987544
No 37
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.3e-37 Score=287.80 Aligned_cols=210 Identities=24% Similarity=0.285 Sum_probs=97.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTV--LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP 85 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp 85 (460)
+..|.||||+|+..|+.++|++|++.+... .....+..|.||||+|+..|+.++|++|++. |++++..+..|.||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA---GCDPELRDFRGNTP 81 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC---CCCSCCCCTTCCCH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCH
Confidence 344555555555555555555555444321 0111223445555555555555555555554 55555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHcCCcc-----ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC-
Q 012618 86 LMVAAMNGKLSCVKKLIESGAFI-----LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE- 159 (460)
Q Consensus 86 L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~- 159 (460)
||+|+..|+.+++++|++.++++ .+..+..|.||||+|+..|+.+++++|++.+++ ++.++.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~ 149 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------VNAQEPC 149 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC------------TTCCCTT
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCCCCC
Confidence 55555555555555555554321 233344445555555555555555555544444 444443
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH
Q 012618 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV--QPDAFGRIPYA 236 (460)
Q Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~tpL~ 236 (460)
.|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++.. .++..|.||++
T Consensus 150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~ 224 (236)
T 1ikn_D 150 NGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224 (236)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence 44555555555555555555555444 233334444455555555555555555555544433 34444444443
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.3e-35 Score=269.05 Aligned_cols=196 Identities=25% Similarity=0.260 Sum_probs=183.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCC-CCccCCCCCCcHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT-NTDALNRYKQTPL 86 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~~g~tpL 86 (460)
+..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.+++++|++. +. +++..+..|.|||
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L 96 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTPL 96 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHB---TTSCTTCCCTTCCCHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCcHH
Confidence 578999999999999999999999999988543 56889999999999999999999998 65 8899999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHH
Q 012618 87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~ 166 (460)
|+|+..++.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||
T Consensus 97 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~ 163 (223)
T 2f8y_A 97 ILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------------KDMQNNREETPLF 163 (223)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTCCCHHH
T ss_pred HHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCcCHHH
Confidence 9999999999999999999988 77788999999999999999999999999988 8999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225 (460)
Q Consensus 167 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 225 (460)
+|+..|+.+++++|+++|+ +.+..|..|.||||+|++.++.+++++|+++|+...
T Consensus 164 ~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 164 LAAREGSYETAKVLLDHFA----NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHHcCCHHHHHHHHHcCC----CCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 9999999999999999999 556778899999999999999999999999998754
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=7.2e-37 Score=284.51 Aligned_cols=205 Identities=24% Similarity=0.264 Sum_probs=184.0
Q ss_pred CCCCccHHHHHHHcCcHHHHHHHHhccC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618 43 GYGKQSALHLAAAYGQIEVLSMLLDQFF-LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH 121 (460)
Q Consensus 43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 121 (460)
+.+|.||||+|+..|+.+++++|++... .+++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 83 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH 83 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence 5689999999999999999999998721 12478999999999999999999999999999999998 778889999999
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC-CCCh
Q 012618 122 YAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY-PGST 200 (460)
Q Consensus 122 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~-~g~T 200 (460)
+|+..|+.+++++|++.++.+.. ...++..+..|.||||+|+..|+.+++++|+++|+ +.+..+. .|.|
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~g~t 153 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHL------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA----DVNAQEPCNGRT 153 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSS------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCC
T ss_pred HHHHcCCHHHHHHHHhcccchhH------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCC
Confidence 99999999999999999876322 12368889999999999999999999999999999 5555665 8999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258 (460)
Q Consensus 201 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 258 (460)
|||+|+..|+.++|++|+++|++++.+|..|+|||++|+..++.+++++|+++|+++.
T Consensus 154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999776
No 40
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.8e-35 Score=265.55 Aligned_cols=192 Identities=24% Similarity=0.257 Sum_probs=157.9
Q ss_pred CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA 124 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~ 124 (460)
.+.||||.|+..|+.++++.|+... +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDT--TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG 80 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHcC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 4568888888888888888888872 3378888888888888888888888888888888877 667778888888888
Q ss_pred HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CccccCCCCCCCCCChHHH
Q 012618 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG-ALACSSTGGNGYPGSTPLH 203 (460)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~d~~g~TpLh 203 (460)
..|+.+++++|++.+... ++..+..|.||||+|+..|+.+++++|+++| + +.+..|..|.||||
T Consensus 81 ~~~~~~~~~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~g~t~L~ 145 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPD-----------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE----DIDFQNDFGYTALI 145 (201)
T ss_dssp HTTCHHHHHHHHHHSCCC-----------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC----CTTCCCTTSCCHHH
T ss_pred HcCCHHHHHHHHhccCcc-----------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CcCCCCCCCCCHHH
Confidence 888888888888554432 6778888888888888888888888888888 6 55666778888888
Q ss_pred HHHhcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618 204 FAARGGS-----LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254 (460)
Q Consensus 204 ~A~~~g~-----~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g 254 (460)
+|+..++ .+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|
T Consensus 146 ~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 8888887 88888888888888888888888888888888888888888776
No 41
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=290.95 Aligned_cols=214 Identities=29% Similarity=0.345 Sum_probs=168.1
Q ss_pred CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC--------CccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCccccCC
Q 012618 42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN--------TDALNRYKQTPLMVAAMNGKL-SCVKKLIESGAFILNFD 112 (460)
Q Consensus 42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--------~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~g~~~~~~~ 112 (460)
.++.+.++|+.|+..|+.++|++||+. +.+ ++..+..|.||||+|+..++. .++++|++.|+++ +..
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~---~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~ 82 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEW---TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVT 82 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTC---C----------------------------------------CCCCT-TCC
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHC---CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCc
Confidence 356678999999999999999999998 543 456778899999999988776 5889999999998 888
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC
Q 012618 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG 192 (460)
Q Consensus 113 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 192 (460)
|.+|+||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..++.+++++|+++|+ +++
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~----~~n 146 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGAN------------AGARNADQAVPLHLACQQGHFQVVKCLLDSNA----KPN 146 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCC------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCC------------cCccCCCCCCccccccccChHHHHHHHHHCCC----CCC
Confidence 89999999999999999999999999988 78899999999999999999999999999999 556
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCH
Q 012618 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNP 272 (460)
Q Consensus 193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~ 272 (460)
.+|..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|+++.. .+.
T Consensus 147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----------~d~ 216 (269)
T 4b93_B 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----------LNK 216 (269)
T ss_dssp CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCT
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----------cCC
Confidence 7788999999999999999999999999999999999999999999999999999999999997664 455
Q ss_pred HHHHHHHHHHhhh
Q 012618 273 EAKELLEKALMES 285 (460)
Q Consensus 273 ~~~~~L~~a~~~~ 285 (460)
.|+|+|+.|....
T Consensus 217 ~G~TpL~~A~~~~ 229 (269)
T 4b93_B 217 RQRTAVDCAEQNS 229 (269)
T ss_dssp TSCCSGGGSCTTC
T ss_pred CCCCHHHHHHhCC
Confidence 6777888776543
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.3e-35 Score=273.35 Aligned_cols=201 Identities=22% Similarity=0.279 Sum_probs=177.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCC-----ccCCCCCC
Q 012618 10 RSESALFVAVENGDLQMIEAMVEA-DPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNT-----DALNRYKQ 83 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~~~g~ 83 (460)
.|.||||+|+..|+.++|++|++. +.+++.. +..|.||||+|+..|+.+++++|++. ++++ +..|..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEA---APELVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHH---CGGGGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHc---CchhccccccccCCCCc
Confidence 479999999999999999999998 8777543 56899999999999999999999998 7776 66788999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCccccCCCC-------------CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCC
Q 012618 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSL-------------QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGF 150 (460)
Q Consensus 84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 150 (460)
||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++|++.|++
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------- 146 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD--------- 146 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---------
Confidence 9999999999999999999999988 44433 799999999999999999999999988
Q ss_pred ccccccCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCccccCC--CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 012618 151 SRFVNIRDESGATPLHLAARQGWSECV----HTLLDNGALACSST--GGNGYPGSTPLHFAARGGSLECIRELLAWGADR 224 (460)
Q Consensus 151 ~~~v~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~--~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 224 (460)
++.+|..|.||||+|+..++.+++ ++|+++|++..... +..|..|.||||+|+..|+.+++++|+++|++.
T Consensus 147 ---~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 147 ---IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp ---TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred ---CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 899999999999999999999988 99999999542111 467889999999999999999999999999876
Q ss_pred CCCC
Q 012618 225 VQPD 228 (460)
Q Consensus 225 ~~~d 228 (460)
....
T Consensus 224 ~~~~ 227 (232)
T 2rfa_A 224 AAAH 227 (232)
T ss_dssp ----
T ss_pred hhhh
Confidence 5543
No 43
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=273.42 Aligned_cols=227 Identities=22% Similarity=0.204 Sum_probs=209.1
Q ss_pred CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618 43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY 122 (460)
Q Consensus 43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 122 (460)
+..|.|+||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.|+++....+..|.||||+
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEA---GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 34678999999999999999999999 999999999999999999999999999999999999877777779999999
Q ss_pred HHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618 123 AAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202 (460)
Q Consensus 123 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL 202 (460)
|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|+++|+ +.+..+..|.|||
T Consensus 83 A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~g~t~l 146 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGAD------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ----DVDMMDQNGMTPL 146 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHH
T ss_pred HHHcCCHHHHHHHHHcCCC------------CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC----CccccCCCCCcHH
Confidence 9999999999999999988 78899999999999999999999999999999 5567788999999
Q ss_pred HHHHhcCC-HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHH
Q 012618 203 HFAARGGS-LECIRELLAWGADRVQPDA-FGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEK 280 (460)
Q Consensus 203 h~A~~~g~-~~~v~~Ll~~gad~~~~d~-~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~ 280 (460)
|+|+..++ .+++++|++.|++++..+. .|.||||+|+..++.+++++|+++|+++.. .+..+.++|+.
T Consensus 147 ~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~l~~ 216 (240)
T 3eu9_A 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA----------QNIKGESALDL 216 (240)
T ss_dssp HHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC----------BCTTSCBHHHH
T ss_pred HHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHH
Confidence 99996665 8999999999999999997 999999999999999999999999997654 45567899999
Q ss_pred HHhhhhHHHHHHhhhccc
Q 012618 281 ALMESNEEREKAILNETI 298 (460)
Q Consensus 281 a~~~~~~~~~~~ll~~~~ 298 (460)
|+..++.+.++.+++...
T Consensus 217 A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 217 AKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHTTCHHHHHHHHHHC-
T ss_pred HHHcCcHHHHHHHHHhhh
Confidence 999999999999987644
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.2e-34 Score=259.47 Aligned_cols=193 Identities=21% Similarity=0.293 Sum_probs=176.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADP-TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
+..+.|+|+.|+..|+.+.|+.|++.+. +++. .+.+|.||||+|+..|+.+++++|++. |++++..+..|.|||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l 76 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALIDR---GADINLQNSISDSPY 76 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHH
Confidence 3568899999999999999999999887 5533 346889999999999999999999999 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhc-CCCCCcccCCCccccccCCCCCCCHH
Q 012618 87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA-RTSPVANTWGFSRFVNIRDESGATPL 165 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~v~~~d~~g~t~L 165 (460)
|+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.|||
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~~g~t~L 144 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED------------IDFQNDFGYTAL 144 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC------------TTCCCTTSCCHH
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------cCCCCCCCCCHH
Confidence 99999999999999996655444888889999999999999999999999999 55 899999999999
Q ss_pred HHHHHcCC-----HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618 166 HLAARQGW-----SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221 (460)
Q Consensus 166 ~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 221 (460)
|+|+..+. .+++++|+++|+ +.+.+|..|.||||+|+..|+.+++++|+++|
T Consensus 145 ~~A~~~~~~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 145 IEAVGLREGNQLYQDIVKLLMENGA----DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHSSCCSHHHHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHhccchhhHHHHHHHHHHCCC----CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999998 999999999999 55677889999999999999999999999987
No 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2e-35 Score=280.99 Aligned_cols=214 Identities=22% Similarity=0.204 Sum_probs=172.6
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCcccc--cCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCC--
Q 012618 7 CRERSESALFVAVENGDLQMIEAMVEA----DPTVLGM--TSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNT-- 75 (460)
Q Consensus 7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~----~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~-- 75 (460)
.+..|.|+||+|+..|+.++|+.|++. +.+++.. ..+..|.||||+|+.. |+.++|++|++. |+++
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~---ga~~~~ 85 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV---ARKTDS 85 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH---HHHTTC
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh---hccccc
Confidence 467899999999999999999999974 4444321 2356899999999987 999999999998 5432
Q ss_pred ---------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCC--------------CCChHHHHHHHcCCHHHH
Q 012618 76 ---------DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSL--------------QGRTCLHYAAYYGHSDCL 132 (460)
Q Consensus 76 ---------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--------------~g~t~L~~A~~~g~~~iv 132 (460)
...|..|.||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 225678999999999999999999999999998 55554 799999999999999999
Q ss_pred HHHHH---hcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCccccCC---CCCCCC
Q 012618 133 QALLT---AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW---------SECVHTLLDNGALACSST---GGNGYP 197 (460)
Q Consensus 133 ~~Ll~---~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~---~~~d~~ 197 (460)
++|++ .+++ ++.+|..|.||||+|+..|+ .+++++|+++|++++... +..|..
T Consensus 165 ~~Ll~~~~~gad------------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~ 232 (273)
T 2pnn_A 165 KFLLQNSWQPAD------------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232 (273)
T ss_dssp HHHHHCSSCCCC------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred HHHHhcccCCCC------------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC
Confidence 99999 8887 89999999999999999998 899999999999765321 346788
Q ss_pred CChHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCCHHH
Q 012618 198 GSTPLHFAARGGSLECIRELLAWGA-DRVQPDAFGRIPYA 236 (460)
Q Consensus 198 g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~tpL~ 236 (460)
|.||||+|+..|+.++|++|+++|+ |+......+.+|-+
T Consensus 233 g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 233 GLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred CCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 9999999999999999999999999 88888777776643
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.6e-35 Score=277.40 Aligned_cols=193 Identities=25% Similarity=0.225 Sum_probs=170.1
Q ss_pred CccHHHHHHHcCcHH----HHHHHHhccCCCCCCcc----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccC---
Q 012618 46 KQSALHLAAAYGQIE----VLSMLLDQFFLYTNTDA----LNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILNF--- 111 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~----iv~~Ll~~~~~~~~~~~----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~--- 111 (460)
|+||||+|+..|+.+ ++++|++. +++++. .|..|.||||+|+.. |+.+++++|++.|+++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~---g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWN---SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHH---TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHc---CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 678899999988886 56677777 888887 788899999999988 8999999999888766322
Q ss_pred -------CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC-------------CCCHHHHHHHc
Q 012618 112 -------DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES-------------GATPLHLAARQ 171 (460)
Q Consensus 112 -------~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~-------------g~t~L~~A~~~ 171 (460)
.+..|+||||+|+..|+.+++++|++.+++ ++.++.. |.||||+|+..
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 146 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------------VHLRACGRFFQKHQGTCFYFGELPLSLAACT 146 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCcccccccccccccccccCCCCHHHHHHHc
Confidence 236799999999999999999999999988 5666654 99999999999
Q ss_pred CCHHHHHHHHH---cCCccccCCCCCCCCCChHHHHHHh--cCCHH-------HHHHHHHcCCCC-------CCCCCCCC
Q 012618 172 GWSECVHTLLD---NGALACSSTGGNGYPGSTPLHFAAR--GGSLE-------CIRELLAWGADR-------VQPDAFGR 232 (460)
Q Consensus 172 g~~~~v~~Ll~---~ga~~~~~~~~~d~~g~TpLh~A~~--~g~~~-------~v~~Ll~~gad~-------~~~d~~G~ 232 (460)
|+.+++++|++ +|+ +.+.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+
T Consensus 147 ~~~~~v~~Ll~~~~~ga----~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~ 222 (256)
T 2etb_A 147 KQWDVVTYLLENPHQPA----SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222 (256)
T ss_dssp TCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred CCHHHHHHHHhccccCC----CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence 99999999999 899 566778899999999999 88888 999999999999 89999999
Q ss_pred CHHHHHHHhChHHHHHhhCCCCCCC
Q 012618 233 IPYAIALKYKHQACAALLNPSSAEP 257 (460)
Q Consensus 233 tpL~~A~~~~~~~i~~~Ll~~ga~~ 257 (460)
||||+|+..++.+++++|+++|+++
T Consensus 223 tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 223 TPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 9999999999999999999988643
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.3e-35 Score=280.55 Aligned_cols=204 Identities=22% Similarity=0.184 Sum_probs=173.6
Q ss_pred CCCCCccHHHHHHHcCcHHHHHHHHhccC-CCCCCc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCcc-----
Q 012618 42 SGYGKQSALHLAAAYGQIEVLSMLLDQFF-LYTNTD----ALNRYKQTPLMVAAMN---GKLSCVKKLIESGAFI----- 108 (460)
Q Consensus 42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~~~~~----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~----- 108 (460)
.+..|.||||+|+..|+.++|+.|++... .+.+++ ..+..|+||||+|+.. |+.+++++|++.|+++
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 35678999999999999999998887311 155555 3578999999999987 9999999999998753
Q ss_pred -ccC----CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC--------------CCCCHHHHHH
Q 012618 109 -LNF----DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE--------------SGATPLHLAA 169 (460)
Q Consensus 109 -~~~----~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~--------------~g~t~L~~A~ 169 (460)
++. .+..|+||||+|+..|+.+++++|++.+++ ++.++. .|.||||+|+
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 156 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD------------VQAAANGDFFKKTKGRPGFYFGELPLSLAA 156 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------cCccccccccccccccccccCCCCHHHHHH
Confidence 122 456899999999999999999999999988 555554 8999999999
Q ss_pred HcCCHHHHHHHHH---cCCccccCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCCC-------CCCCC
Q 012618 170 RQGWSECVHTLLD---NGALACSSTGGNGYPGSTPLHFAARGGS---------LECIRELLAWGADRV-------QPDAF 230 (460)
Q Consensus 170 ~~g~~~~v~~Ll~---~ga~~~~~~~~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~~-------~~d~~ 230 (460)
..|+.+++++|++ +|+ +.+.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..
T Consensus 157 ~~g~~~~v~~Ll~~~~~ga----d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~ 232 (273)
T 2pnn_A 157 CTNQLAIVKFLLQNSWQPA----DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232 (273)
T ss_dssp HTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred HcCCHHHHHHHHhcccCCC----CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC
Confidence 9999999999999 899 566778899999999999998 899999999999997 48999
Q ss_pred CCCHHHHHHHhChHHHHHhhCCCCC-CCCccc
Q 012618 231 GRIPYAIALKYKHQACAALLNPSSA-EPLVWP 261 (460)
Q Consensus 231 G~tpL~~A~~~~~~~i~~~Ll~~ga-~~~~~~ 261 (460)
|+||||+|+..++.+++++|+++|| +|...+
T Consensus 233 g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~ 264 (273)
T 2pnn_A 233 GLTPLALAASSGKIGVLAYILQREIHEPECRH 264 (273)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHTC------
T ss_pred CCCHHHHHHHhChHHHHHHHHHCCCCCchhhh
Confidence 9999999999999999999999999 666544
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=6.1e-34 Score=251.06 Aligned_cols=159 Identities=35% Similarity=0.443 Sum_probs=110.8
Q ss_pred cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127 (460)
Q Consensus 48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g 127 (460)
++|+.|++.|+.++|++||++ |+++|.+|..|+||||+|+..++.+++++|++.|+++ +..+..|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~---Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN---GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence 457777777777777777777 7777777777777777777777777777777777766 556667777777777777
Q ss_pred CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHh
Q 012618 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR 207 (460)
Q Consensus 128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~ 207 (460)
+.+++++|++.|++ +|.+|..|+||||+|+..|+.++|++|+++|+ +++.+|..|+||||+|++
T Consensus 82 ~~~~v~~Ll~~gad------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~TpL~~A~~ 145 (169)
T 4gpm_A 82 HKEVVKLLISKGAD------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA----DVNTSDSDGRTPLDLARE 145 (169)
T ss_dssp CHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHHCcCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHH
Confidence 77777777777766 66777777777777777777777777777776 445556667777777777
Q ss_pred cCCHHHHHHHHHcCCCCCC
Q 012618 208 GGSLECIRELLAWGADRVQ 226 (460)
Q Consensus 208 ~g~~~~v~~Ll~~gad~~~ 226 (460)
.|+.+++++|+++||+++.
T Consensus 146 ~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 146 HGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp TTCHHHHHHHHTC------
T ss_pred cCCHHHHHHHHHCCCCcCC
Confidence 7777777777777776653
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.1e-33 Score=249.52 Aligned_cols=158 Identities=37% Similarity=0.508 Sum_probs=147.9
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618 84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163 (460)
Q Consensus 84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t 163 (460)
++|+.|+..|+.++|++||+.|+++ +..|..|+||||+|+..++.+++++|++.+++ ++.+|..|.|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad------------~~~~d~~g~T 72 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD------------VNAKDSDGRT 72 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc------------hhhhccCCCC
Confidence 5799999999999999999999998 88889999999999999999999999999998 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243 (460)
Q Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~ 243 (460)
|||+|+..|+.++|++|+++|+ +++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+|||++|+.+++
T Consensus 73 pLh~A~~~g~~~~v~~Ll~~ga----dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 73 PLHHAAENGHKEVVKLLISKGA----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCcC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 9999999999999999999999 556778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCC
Q 012618 244 QACAALLNPSSAEPL 258 (460)
Q Consensus 244 ~~i~~~Ll~~ga~~~ 258 (460)
.+++++|+++||+..
T Consensus 149 ~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 149 EEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHHHHTC-----
T ss_pred HHHHHHHHHCCCCcC
Confidence 999999999999653
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.6e-34 Score=271.99 Aligned_cols=199 Identities=25% Similarity=0.299 Sum_probs=174.3
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHHcCCCcccc--cCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCCcc----
Q 012618 11 SESALFVAVENGDLQ----MIEAMVEADPTVLGM--TSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNTDA---- 77 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~----~vk~Ll~~~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~---- 77 (460)
|.||||+|+..|+.+ ++++|++.|.+++.. ..+..|.||||+|+.. |+.++|++|++. +++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~---g~~~~~~~~~ 78 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI---DKDSGNPKPL 78 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH---HHHTTCSSCG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc---CCcccchhhh
Confidence 789999999999997 667777789988640 1356899999999999 999999999998 666653
Q ss_pred -------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCC-------------CChHHHHHHHcCCHHHHHHHHH
Q 012618 78 -------LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQ-------------GRTCLHYAAYYGHSDCLQALLT 137 (460)
Q Consensus 78 -------~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-------------g~t~L~~A~~~g~~~iv~~Ll~ 137 (460)
.|..|.||||+|+..|+.+++++|++.|+++ +..+.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 3477999999999999999999999999998 555554 9999999999999999999999
Q ss_pred ---hcCCCCCcccCCCccccccCCCCCCCHHHHHHH--cCCHH-------HHHHHHHcCCccccCC---CCCCCCCChHH
Q 012618 138 ---AARTSPVANTWGFSRFVNIRDESGATPLHLAAR--QGWSE-------CVHTLLDNGALACSST---GGNGYPGSTPL 202 (460)
Q Consensus 138 ---~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~--~g~~~-------~v~~Ll~~ga~~~~~~---~~~d~~g~TpL 202 (460)
.+++ ++.+|..|.||||+|+. .++.+ ++++|+++|++++... +.+|..|.|||
T Consensus 158 ~~~~ga~------------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL 225 (256)
T 2etb_A 158 NPHQPAS------------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225 (256)
T ss_dssp CSSCCCC------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH
T ss_pred ccccCCC------------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH
Confidence 8887 89999999999999999 88888 9999999999663221 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCC
Q 012618 203 HFAARGGSLECIRELLAWGADRV 225 (460)
Q Consensus 203 h~A~~~g~~~~v~~Ll~~gad~~ 225 (460)
|+|+..|+.+++++|+++|++..
T Consensus 226 ~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 226 KLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhCCCCCC
Confidence 99999999999999999987653
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.2e-33 Score=266.60 Aligned_cols=205 Identities=20% Similarity=0.176 Sum_probs=173.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----cCCCccccc--CCCCCccHHHHHH---HcCcHHHHHHHHhccCC--------
Q 012618 9 ERSESALFVAVENGDLQMIEAMVE----ADPTVLGMT--SGYGKQSALHLAA---AYGQIEVLSMLLDQFFL-------- 71 (460)
Q Consensus 9 ~~g~t~L~~Aa~~g~~~~vk~Ll~----~~~~~~~~~--~~~~g~t~Lh~A~---~~g~~~iv~~Ll~~~~~-------- 71 (460)
..+.++||.|+..|+.+.|+.|++ .+.+++... .+..|.||||+|+ ..|+.++|++|++....
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 457899999999999996555555 888886443 2357999999999 67999999999997210
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCC--------------CCCChHHHHHHHcCCHHHHHHHHH
Q 012618 72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDS--------------LQGRTCLHYAAYYGHSDCLQALLT 137 (460)
Q Consensus 72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~~g~t~L~~A~~~g~~~iv~~Ll~ 137 (460)
..+++..|..|+||||+|+..|+.++|++|++.|+++ +..+ ..|+||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1334556668999999999999999999999999998 5555 579999999999999999999999
Q ss_pred ---hcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCccccCC---CCCCCCCChHH
Q 012618 138 ---AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW---------SECVHTLLDNGALACSST---GGNGYPGSTPL 202 (460)
Q Consensus 138 ---~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~---~~~d~~g~TpL 202 (460)
.+++ ++.+|..|.||||+|+..++ .+++++|+++|++++... +..|..|.|||
T Consensus 162 ~~~~ga~------------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL 229 (260)
T 3jxi_A 162 NGHKQAD------------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229 (260)
T ss_dssp CSSCCCC------------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred ccccCCC------------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence 7887 89999999999999999887 799999999999664322 45778899999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCC
Q 012618 203 HFAARGGSLECIRELLAWGADRVQ 226 (460)
Q Consensus 203 h~A~~~g~~~~v~~Ll~~gad~~~ 226 (460)
|+|+..|+.++|++|+++|++...
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHhCCCccc
Confidence 999999999999999999876543
No 52
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-34 Score=282.04 Aligned_cols=243 Identities=17% Similarity=0.090 Sum_probs=187.0
Q ss_pred CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc---------------CCCCCccHHHHHHHcCcHHHHHHH
Q 012618 2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMT---------------SGYGKQSALHLAAAYGQIEVLSML 65 (460)
Q Consensus 2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~---------------~~~~g~t~Lh~A~~~g~~~iv~~L 65 (460)
|.++.. +..|.++++ |+.++|+.||++|.+..... ......+.+|+|+..+..+++++|
T Consensus 42 ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l 116 (327)
T 1sw6_A 42 PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116 (327)
T ss_dssp SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence 344443 457888876 99999999999987653310 001112345888888889999999
Q ss_pred HhccCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC---HHHHHHHHHhcCC
Q 012618 66 LDQFFLYTNTDA-LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH---SDCLQALLTAART 141 (460)
Q Consensus 66 l~~~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~~~~ 141 (460)
++. |+++|. .|..|+||||+|+..|+.++|++|+++|+++ +..+..|+||||+|+..|+ .++++.|++.+..
T Consensus 117 ~~~---g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~ 192 (327)
T 1sw6_A 117 PNT---QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 192 (327)
T ss_dssp TTS---CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred Hhc---CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc
Confidence 999 999999 8999999999999999999999999999998 7888999999999999998 6788888887632
Q ss_pred CCCcccCCCccccccCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCcc----------------ccCCCCCCCCCChH
Q 012618 142 SPVANTWGFSRFVNIRDESGATPLHLAAR----QGWSECVHTLLDNGALA----------------CSSTGGNGYPGSTP 201 (460)
Q Consensus 142 ~~~~~~~~~~~~v~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~----------------~~~~~~~d~~g~Tp 201 (460)
. ++.+|..|.||||+|+. .|+.+++++|++.++.. ..+.+..+..|.||
T Consensus 193 ~-----------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~ 261 (327)
T 1sw6_A 193 C-----------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261 (327)
T ss_dssp G-----------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred c-----------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence 1 89999999999999999 89999999999883210 12556778899999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHH
Q 012618 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKA 281 (460)
Q Consensus 202 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a 281 (460)
||+|+. +++|+++ +++.+|..|+||||+|+..++.+++++|+++|+++.. .+..++++|+.|
T Consensus 262 L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~----------~d~~G~TpL~~A 323 (327)
T 1sw6_A 262 ILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----------ANKSGLRPVDFG 323 (327)
T ss_dssp HHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGT
T ss_pred hHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHH
Confidence 999986 8999998 6888999999999999999999999999999997765 344566666665
Q ss_pred H
Q 012618 282 L 282 (460)
Q Consensus 282 ~ 282 (460)
+
T Consensus 324 ~ 324 (327)
T 1sw6_A 324 A 324 (327)
T ss_dssp C
T ss_pred H
Confidence 4
No 53
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=6.2e-34 Score=278.27 Aligned_cols=213 Identities=17% Similarity=0.122 Sum_probs=169.0
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC
Q 012618 14 ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG 93 (460)
Q Consensus 14 ~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g 93 (460)
.+|.|+..+..++++.|++.|.+++.. .+..|.||||+|+..|+.++|++||++ |++++.+|..|+||||+|+..|
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~---Gad~n~~d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSV 175 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTBCCTTCCCHHHHHHHSS
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhc
Confidence 458888888999999999999998652 356899999999999999999999999 9999999999999999999999
Q ss_pred C---HHHHHHHHHcCCccccCCCCCCChHHHHHHH----cCCHHHHHHHHHhcCCCCC--------cccCCCccccccCC
Q 012618 94 K---LSCVKKLIESGAFILNFDSLQGRTCLHYAAY----YGHSDCLQALLTAARTSPV--------ANTWGFSRFVNIRD 158 (460)
Q Consensus 94 ~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~~~~~~~--------~~~~~~~~~v~~~d 158 (460)
+ .++++.|++.+....+..+..|+||||+|+. .|+.+++++|++.+..... .........++.++
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 255 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc
Confidence 8 7888888888744448888999999999999 8999999999988421000 00000012278899
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A 238 (460)
..|.||||+|+. +++|++++ ++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus 256 ~~g~t~L~~a~~------~~~Ll~~~------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 256 GERKDSILENLD------LKWIIANM------LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp ----CHHHHHCS------HHHHHHHT------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred ccCCChhHHHHH------HHHHHHhC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 999999999996 99999984 356788999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 012618 239 LKYK 242 (460)
Q Consensus 239 ~~~~ 242 (460)
+++|
T Consensus 324 ~~~g 327 (327)
T 1sw6_A 324 AGLE 327 (327)
T ss_dssp CC--
T ss_pred HhcC
Confidence 8654
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=6.5e-34 Score=268.33 Aligned_cols=197 Identities=19% Similarity=0.106 Sum_probs=172.4
Q ss_pred CCccHHHHHHHcCcHHHHHHH----HhccCCCCCCccCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCcc-----
Q 012618 45 GKQSALHLAAAYGQIEVLSML----LDQFFLYTNTDALN----RYKQTPLMVAA---MNGKLSCVKKLIESGAFI----- 108 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~L----l~~~~~~~~~~~~~----~~g~tpL~~A~---~~g~~~~v~~Ll~~g~~~----- 108 (460)
.++|+||.|+..|+.+.|+.| ++. +.+++..+ ..|.||||+|+ ..|+.+++++|++.|+++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~---~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTH---KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH---TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 568999999999999955544 457 88888666 67999999999 679999999999998642
Q ss_pred -----ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC--------------CCCCCHHHHHH
Q 012618 109 -----LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD--------------ESGATPLHLAA 169 (460)
Q Consensus 109 -----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d--------------~~g~t~L~~A~ 169 (460)
....+..|+||||+|+..|+.+++++|++.+++ ++.++ ..|.||||+|+
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 148 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD------------VHAQARGRFFQPKDEGGYFYFGELPLSLAA 148 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCEECCCSSSCCCCSCCSCSSHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC------------cCccccccccCcccccccccCCCCHHHHHH
Confidence 133345899999999999999999999999988 56666 68999999999
Q ss_pred HcCCHHHHHHHHH---cCCccccCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCC-------CCCCCC
Q 012618 170 RQGWSECVHTLLD---NGALACSSTGGNGYPGSTPLHFAARGGS---------LECIRELLAWGADR-------VQPDAF 230 (460)
Q Consensus 170 ~~g~~~~v~~Ll~---~ga~~~~~~~~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~-------~~~d~~ 230 (460)
..|+.+++++|++ +|+ +++.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..
T Consensus 149 ~~g~~~~v~~Ll~~~~~ga----~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~ 224 (260)
T 3jxi_A 149 CTNQPHIVHYLTENGHKQA----DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224 (260)
T ss_dssp HTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred HcCCHHHHHHHHhccccCC----CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCC
Confidence 9999999999999 888 566778899999999998888 79999999999999 679999
Q ss_pred CCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618 231 GRIPYAIALKYKHQACAALLNPSSAEPLVW 260 (460)
Q Consensus 231 G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~ 260 (460)
|+||||+|+..|+.+++++|+++|+++..+
T Consensus 225 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhCCCcccc
Confidence 999999999999999999999998755443
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.98 E-value=1.6e-32 Score=261.68 Aligned_cols=190 Identities=20% Similarity=0.214 Sum_probs=176.2
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCC--CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTN--TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
..+++|.|+..++.+.++.+++. +.+ +|..|..|+||||+|+..|+.+++++|++.|+...+..+..|+||||+|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~---~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSAR---LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHH---HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred hccCCCHHHHHHHHHHHHHHHHH---HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence 35788999999999999999987 555 8889999999999999999999999999999954588899999999999
Q ss_pred H-----HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCC
Q 012618 124 A-----YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG 198 (460)
Q Consensus 124 ~-----~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g 198 (460)
+ ..++.+++++|++.+.. ++..+..|.||||+|+..|+.++|++|+++|+ +++.+|..|
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga----d~n~~d~~G 216 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNI------------NAKASQAGQTALMLAVSHGRVDVVKALLACEA----DVNVQDDDG 216 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCT------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTS
T ss_pred HHHHhhhhhhHHHHHHHHHcCCC------------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCCCCCC
Confidence 9 66889999999999977 67888999999999999999999999999999 566778899
Q ss_pred ChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618 199 STPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254 (460)
Q Consensus 199 ~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g 254 (460)
+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..++.+++++|+++.
T Consensus 217 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 217 STALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999999 89999999999999999999999999999998764
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.2e-31 Score=234.96 Aligned_cols=168 Identities=27% Similarity=0.309 Sum_probs=126.3
Q ss_pred ccHHHHHHHcCcHHHHHHHHhccCCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618 47 QSALHLAAAYGQIEVLSMLLDQFFLYTN-TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125 (460)
Q Consensus 47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 125 (460)
.||||.|+..|+.+++++|++. +.+ ++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST 78 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence 4778888888888888888877 544 6777777888888888888888888888888776 6666778888888888
Q ss_pred cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205 (460)
Q Consensus 126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A 205 (460)
.|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|
T Consensus 79 ~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A 142 (172)
T 3v30_A 79 GGYTDIVGLLLERDVD------------INIYDWNGGTPLLYAVRGNHVKCVEALLARGA----DLTTEADSGYTPMDLA 142 (172)
T ss_dssp TTCHHHHHHHHTTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHH
Confidence 8888888888887776 67778888888888888888888888888887 4555667788888888
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 012618 206 ARGGSLECIRELLAWGADRVQPDAFGRIP 234 (460)
Q Consensus 206 ~~~g~~~~v~~Ll~~gad~~~~d~~G~tp 234 (460)
+..|+.+++++|+++|+++...+..|.||
T Consensus 143 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 143 VALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 88888888888888888877777777766
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1e-31 Score=256.23 Aligned_cols=191 Identities=26% Similarity=0.286 Sum_probs=175.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCC-CCccCCCCCCcHHHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT-NTDALNRYKQTPLMVA 89 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~~g~tpL~~A 89 (460)
..+++|.|+..|+++.++.+++.+.+......+.+|.||||+|+..|+.++|++|++. |+ +++..+..|.||||+|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS---GVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCcCCCCCCCCCCHHHHH
Confidence 3567889999999999999998877744445567899999999999999999999999 87 9999999999999999
Q ss_pred H-----HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618 90 A-----MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164 (460)
Q Consensus 90 ~-----~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~ 164 (460)
+ ..++.+++++|++.|..+ ...+..|+||||+|+..|+.+++++|++.|++ +|.+|..|.||
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad------------~n~~d~~G~Tp 219 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD------------VNVQDDDGSTA 219 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------------CCCCCCCCCCH
Confidence 9 668999999999999876 67778899999999999999999999999998 89999999999
Q ss_pred HHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618 165 LHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221 (460)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 221 (460)
||+|+..|+.+++++|++ .|+ +.+..|..|.||||+|+..|+.+++++|++++
T Consensus 220 Lh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 220 LMCACEHGHKEIAGLLLAVPSC----DISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHTCHHHHHHHHTSTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHhcCCC----CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999 899 56677889999999999999999999999874
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.6e-31 Score=238.99 Aligned_cols=163 Identities=31% Similarity=0.404 Sum_probs=130.3
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618 75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV 154 (460)
Q Consensus 75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v 154 (460)
+|.+|..|+||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++ +
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~ 94 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------------V 94 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------------T
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC------------C
Confidence 3456777888888888888888888888887776 56667788888888888888888888888776 6
Q ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 012618 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234 (460)
Q Consensus 155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp 234 (460)
+.+|..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 95 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 170 (192)
T 2rfm_A 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA----NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170 (192)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 7778888888888888888888888888887 445666778888888888888888888888888888888888888
Q ss_pred HHHHHHhChHHHHHhhCCCC
Q 012618 235 YAIALKYKHQACAALLNPSS 254 (460)
Q Consensus 235 L~~A~~~~~~~i~~~Ll~~g 254 (460)
|++|+..++.+++++|++++
T Consensus 171 l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 171 EASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHhcc
Confidence 88888888888888886543
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.9e-30 Score=226.47 Aligned_cols=157 Identities=34% Similarity=0.427 Sum_probs=113.8
Q ss_pred ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126 (460)
Q Consensus 47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 126 (460)
.||||.|+..|+.+++++|++. +++++..+..|.||||+|+. |+.+++++|++.|+++ +..+..|+||||+|+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTS---CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhC---CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 4777777777777777777776 77777777777777777777 7777777777777766 55666777777777777
Q ss_pred CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA 206 (460)
Q Consensus 127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~ 206 (460)
|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++ ..+..+..|.||||+|+
T Consensus 81 ~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 81 GFLDTLQTLLEFQAD------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLAR 145 (162)
T ss_dssp TCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHHHHH
Confidence 777777777777766 667777777777777777777777777777762 13455666777777777
Q ss_pred hcCCHHHHHHHHHcCCC
Q 012618 207 RGGSLECIRELLAWGAD 223 (460)
Q Consensus 207 ~~g~~~~v~~Ll~~gad 223 (460)
..|+.+++++|+++|||
T Consensus 146 ~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCHHHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHhCCC
Confidence 77777777777777765
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.6e-30 Score=233.81 Aligned_cols=160 Identities=26% Similarity=0.339 Sum_probs=150.6
Q ss_pred CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618 42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH 121 (460)
Q Consensus 42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 121 (460)
.+..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 106 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVEN---FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM 106 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHH---HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHh---ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 356789999999999999999999999 8999999999999999999999999999999999988 777889999999
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618 122 YAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201 (460)
Q Consensus 122 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp 201 (460)
+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~ 170 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGAN------------VNDRNLEGETPLIVASKYGRSEIVKKLLELGA----DISARDLTGLTA 170 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCC------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CTTCBCTTSCBH
T ss_pred HHHHcCCHHHHHHHHHCCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCH
Confidence 99999999999999999988 89999999999999999999999999999999 556778899999
Q ss_pred HHHHHhcCCHHHHHHHHHcC
Q 012618 202 LHFAARGGSLECIRELLAWG 221 (460)
Q Consensus 202 Lh~A~~~g~~~~v~~Ll~~g 221 (460)
||+|+..|+.+++++|+++|
T Consensus 171 l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 171 EASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHhcc
Confidence 99999999999999999875
No 61
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=4e-30 Score=226.46 Aligned_cols=155 Identities=33% Similarity=0.409 Sum_probs=81.0
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 125 (460)
+.++|+.|+..|+.++|++|+++ +++++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMAN---GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAAL 89 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred ccchHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 44555555555555555555555 5555555555555555555555555555555555544 4444455555555555
Q ss_pred cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205 (460)
Q Consensus 126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A 205 (460)
.|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+.+|..|.||||+|
T Consensus 90 ~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A 153 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGAD------------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA----DVNAQDKFGKTAFDIS 153 (169)
T ss_dssp TTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHH
Confidence 5555555555555444 44444455555555555555555555555544 2233344444555555
Q ss_pred HhcCCHHHHHHHHHc
Q 012618 206 ARGGSLECIRELLAW 220 (460)
Q Consensus 206 ~~~g~~~~v~~Ll~~ 220 (460)
+..|+.+++++|+++
T Consensus 154 ~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 154 IDNGNEDLAEILQKL 168 (169)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHc
Confidence 555555555555443
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3.2e-30 Score=226.32 Aligned_cols=158 Identities=25% Similarity=0.294 Sum_probs=99.0
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 125 (460)
|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQ---ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHH---SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CcchHHHHHHCCCHHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 45666666666666666666666 5666666666666666666666666666666666655 4455566666666666
Q ss_pred cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205 (460)
Q Consensus 126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A 205 (460)
.|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+..+..|.||||+|
T Consensus 79 ~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A 142 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVD------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA----DPTIETDSGYNSMDLA 142 (167)
T ss_dssp HTCHHHHHHHHHHTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHCCCC------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHH
Confidence 6666666666666655 55566666666666666666666666666666 3344455566666666
Q ss_pred HhcCCHHHHHHHHHcCCC
Q 012618 206 ARGGSLECIRELLAWGAD 223 (460)
Q Consensus 206 ~~~g~~~~v~~Ll~~gad 223 (460)
+..|+.+++++|++++++
T Consensus 143 ~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 143 VALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHH
Confidence 666666666666665543
No 63
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-33 Score=260.55 Aligned_cols=201 Identities=19% Similarity=0.142 Sum_probs=171.3
Q ss_pred HHHHHHcCCCcccc-cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012618 27 IEAMVEADPTVLGM-TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105 (460)
Q Consensus 27 vk~Ll~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g 105 (460)
|+.||+++++++.. ..+.++.||||+|+..|+.++|++|++. |++++..|..|+||||+|+..|+.+++++|++.|
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE---MNDPSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH---SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 56788888877533 3346788999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-CCCCCHHHHH--HHcCCHHHHHHHHH
Q 012618 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLA--ARQGWSECVHTLLD 182 (460)
Q Consensus 106 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~~g~t~L~~A--~~~g~~~~v~~Ll~ 182 (460)
+++ +..|..|+||||+|+..|+.+++++|++.+++ ++.++ ..|.||||+| +..|+.+++++|++
T Consensus 78 a~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~ 144 (229)
T 2vge_A 78 ANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA------------IFATTLSDGATAFEKCDPYREGYADCATYLAD 144 (229)
T ss_dssp CCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH
T ss_pred CCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------cccccCCCCCCHHHHHHHHhcChHHHHHHHHH
Confidence 998 77888999999999999999999999999988 78776 6999999999 99999999999999
Q ss_pred cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhChHHHHHhh
Q 012618 183 NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD--RVQPDAFGRIPYAIALKYKHQACAALL 250 (460)
Q Consensus 183 ~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~G~tpL~~A~~~~~~~i~~~L 250 (460)
+|+ +.+..|..|.|||+.++.... +++|+++|++ ++.+|..|+||||+|+..|+.++++.+
T Consensus 145 ~ga----~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 145 VEQ----SMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp HHH----HTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred cCC----CcccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 999 455567788999996665543 3678899998 778899999999999999999998764
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=7.1e-30 Score=224.85 Aligned_cols=159 Identities=37% Similarity=0.501 Sum_probs=125.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618 79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158 (460)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d 158 (460)
...+.|+|+.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++ ++..|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~ 77 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD------------VNAVD 77 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCC
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCccC
Confidence 344567888888888888888888888776 66667788888888888888888888887776 67777
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A 238 (460)
..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus 78 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 153 (169)
T 2y1l_E 78 HAGMTPLRLAALFGHLEIVEVLLKNGA----DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 888888888888888888888888887 4455667788888888888888888888888888888888888888888
Q ss_pred HHhChHHHHHhhCCCC
Q 012618 239 LKYKHQACAALLNPSS 254 (460)
Q Consensus 239 ~~~~~~~i~~~Ll~~g 254 (460)
+..++.+++++|+++|
T Consensus 154 ~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 154 IDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHTTCHHHHHHHHTC-
T ss_pred HHhCCHHHHHHHHHcC
Confidence 8888888888887765
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3e-30 Score=226.52 Aligned_cols=158 Identities=23% Similarity=0.358 Sum_probs=150.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES 160 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~ 160 (460)
.|.||||.|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|++.+++ ++..+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~ 68 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------------PQLLGKG 68 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------------CCCcCCC
Confidence 5889999999999999999999999887 77888999999999999999999999999888 7889999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240 (460)
Q Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~ 240 (460)
|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.
T Consensus 69 g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 69 RESALSLACSKGYTDIVKMLLDCGV----DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144 (167)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHCCC----CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999 556778899999999999999999999999999999999999999999999
Q ss_pred hChHHHHHhhCCCCC
Q 012618 241 YKHQACAALLNPSSA 255 (460)
Q Consensus 241 ~~~~~i~~~Ll~~ga 255 (460)
.++.+++++|+++++
T Consensus 145 ~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 145 LGYRSVQQVIESHLL 159 (167)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH
Confidence 999999999988765
No 66
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=3.4e-30 Score=227.29 Aligned_cols=170 Identities=22% Similarity=0.323 Sum_probs=150.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA 90 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~ 90 (460)
+.+|||+|+..|+.++|++|++.++..... .+..|.||||+|+..|+.++|++|++. |++++..+..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~ 77 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEW---GADPHILAKERESALSLAS 77 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGC-CCTTSCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccC-CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCchhhcccCCCHHHHHH
Confidence 468999999999999999999999885433 346899999999999999999999999 9999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH
Q 012618 91 MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170 (460)
Q Consensus 91 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~ 170 (460)
..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+.
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~g~t~l~~A~~ 144 (172)
T 3v30_A 78 TGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD------------LTTEADSGYTPMDLAVA 144 (172)
T ss_dssp HTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------ccccCCCCCCHHHHHHH
Confidence 999999999999999998 77888999999999999999999999999988 89999999999999999
Q ss_pred cCCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTP 201 (460)
Q Consensus 171 ~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp 201 (460)
.|+.+++++|+++|++. ...+..|.||
T Consensus 145 ~~~~~~~~~L~~~~~~~----~~~~~~~~~p 171 (172)
T 3v30_A 145 LGYRKVQQVIENHILKL----FQSNLVPADP 171 (172)
T ss_dssp HTCHHHHHHHHHHHHHH----SCC-------
T ss_pred hCcHHHHHHHHHHHHHH----hcccCCCCCC
Confidence 99999999999999944 4445566665
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.1e-30 Score=226.12 Aligned_cols=158 Identities=25% Similarity=0.356 Sum_probs=147.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES 160 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~ 160 (460)
...||||.|+..|+.+++++|++.|+++ +..+..|+||||+|+. |+.+++++|++.+.+ ++.+|..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------------~~~~~~~ 69 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN------------PDLKDRT 69 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC------------TTCCCTT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCC------------CCCCCCC
Confidence 4569999999999999999999999988 7778899999999999 999999999999988 7899999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Q 012618 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDAFGRIPYAIAL 239 (460)
Q Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~tpL~~A~ 239 (460)
|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+
T Consensus 70 g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 70 GFAVIHDAARAGFLDTLQTLLEFQA----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145 (162)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence 9999999999999999999999999 5667788999999999999999999999999998 5999999999999999
Q ss_pred HhChHHHHHhhCCCCCC
Q 012618 240 KYKHQACAALLNPSSAE 256 (460)
Q Consensus 240 ~~~~~~i~~~Ll~~ga~ 256 (460)
..++.+++++|+++||+
T Consensus 146 ~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCHHHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHhCCC
Confidence 99999999999999984
No 68
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1e-29 Score=225.91 Aligned_cols=166 Identities=25% Similarity=0.217 Sum_probs=103.6
Q ss_pred CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618 46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125 (460)
Q Consensus 46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 125 (460)
+.++||.|+..|+.++|++|++.. +.+++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+.
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNT--ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCT--TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 446666666666666666666652 4455666666666666666666666666666666665 4555566666666666
Q ss_pred cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205 (460)
Q Consensus 126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A 205 (460)
.|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|
T Consensus 82 ~~~~~~v~~Ll~~g~~------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD------------INAVNEHGNVPLHYACFWGQDQVAEDLVANGA----LVSICNKYGEMPVDKA 145 (179)
T ss_dssp TTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSSBCCTTSCCGGGGS
T ss_pred cCCHHHHHHHHHcCCC------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CcchhccCCCCcHHHH
Confidence 6666666666666655 56666666666666666666666666666666 3344555666666666
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCC
Q 012618 206 ARGGSLECIRELLAWGADRVQPDAF 230 (460)
Q Consensus 206 ~~~g~~~~v~~Ll~~gad~~~~d~~ 230 (460)
+..++.+++++|+++|++++..+..
T Consensus 146 ~~~~~~~~~~~L~~~g~~~~~~~~~ 170 (179)
T 3f6q_A 146 KAPLRELLRERAEKMGQNLNRIPYK 170 (179)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred HHHHHHHHHHHHHHhhcCcccCCcc
Confidence 6666666666666666666655433
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.2e-29 Score=225.54 Aligned_cols=167 Identities=23% Similarity=0.276 Sum_probs=154.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC
Q 012618 80 RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE 159 (460)
Q Consensus 80 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~ 159 (460)
..+.++||.|+..|+.+++++|++.+....+..+..|+||||+|+..|+.+++++|++.+++ ++.+|.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~ 70 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------------INVMNR 70 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC------------CCCcCC
Confidence 35789999999999999999999997665688889999999999999999999999999988 899999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 012618 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239 (460)
Q Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~ 239 (460)
.|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus 71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 146 (179)
T 3f6q_A 71 GDDTPLHLAASHGHRDIVQKLLQYKA----DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146 (179)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH
Confidence 99999999999999999999999999 56677889999999999999999999999999999999999999999999
Q ss_pred HhChHHHHHhhCCCCCCCCcccc
Q 012618 240 KYKHQACAALLNPSSAEPLVWPL 262 (460)
Q Consensus 240 ~~~~~~i~~~Ll~~ga~~~~~~~ 262 (460)
..++.+++++|+++|+++...+.
T Consensus 147 ~~~~~~~~~~L~~~g~~~~~~~~ 169 (179)
T 3f6q_A 147 APLRELLRERAEKMGQNLNRIPY 169 (179)
T ss_dssp HHHHHHHHHHHHHTTCCCSCBCC
T ss_pred HHHHHHHHHHHHHhhcCcccCCc
Confidence 99999999999999998876543
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=4.4e-30 Score=225.00 Aligned_cols=157 Identities=29% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA 124 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~ 124 (460)
+|.|+||.|+..|+.+++++|++.. +.+++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTT--TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcC--CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 3445555555555555555555531 3344444444555555555555555555555555444 334444444444444
Q ss_pred HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH
Q 012618 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204 (460)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~ 204 (460)
..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+.+|..|.||||+
T Consensus 84 ~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAV------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA----DPTKKNRDGNTPLDL 147 (165)
T ss_dssp HTTCHHHHHHHHHTTCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTGGG
T ss_pred HcCcHHHHHHHHhCCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCChhHh
Confidence 44444444444444444 34444444444444444444444444444444 223334444444444
Q ss_pred HHhcCCHHHHHHHHHcC
Q 012618 205 AARGGSLECIRELLAWG 221 (460)
Q Consensus 205 A~~~g~~~~v~~Ll~~g 221 (460)
|+. ++.+++++|+++|
T Consensus 148 a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 148 VKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp SCT-TCHHHHHHHHTC-
T ss_pred Hhc-CChHHHHHHhhcc
Confidence 333 4444444444443
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.6e-29 Score=217.41 Aligned_cols=150 Identities=30% Similarity=0.445 Sum_probs=120.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC
Q 012618 83 QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA 162 (460)
Q Consensus 83 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~ 162 (460)
.|+||.|+..|+.+++++|++.|+++ + .+..|.||||+|+..|+.+++++|++.+.+ ++.++..|.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~ 68 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS------------RDARTKVDR 68 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------------TTCCCTTCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCCCCCCC
Confidence 47788888888888888888877765 2 356778888888888888888888887776 677788888
Q ss_pred CHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK 242 (460)
Q Consensus 163 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~ 242 (460)
||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+
T Consensus 69 t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 144 (153)
T 1awc_B 69 TPLHMAASEGHANIVEVLLKHGA----DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144 (153)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CHHHHHHHcChHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 88888888888888888888887 45566777888888888888888888888888888888888888888888888
Q ss_pred hHHHHHhh
Q 012618 243 HQACAALL 250 (460)
Q Consensus 243 ~~~i~~~L 250 (460)
+.+++++|
T Consensus 145 ~~~i~~~L 152 (153)
T 1awc_B 145 NEDLAEIL 152 (153)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 88888876
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=3.2e-29 Score=219.52 Aligned_cols=160 Identities=29% Similarity=0.329 Sum_probs=109.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618 79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158 (460)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d 158 (460)
|..|.||||.|+..|+.+++++|++.+.......+..|+||||+|+..|+.+++++|++.+.+ ++.+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~ 72 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD------------VHAKD 72 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCC
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC------------CCccC
Confidence 445667777777777777777777654444455556667777777777777777777777666 66677
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238 (460)
Q Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A 238 (460)
..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus 73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a 148 (165)
T 3twr_A 73 KGGLVPLHNACSYGHYEVAELLVKHGA----VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148 (165)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGS
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhCCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhH
Confidence 777777777777777777777777776 4445566677777777777777777777777777777777777777776
Q ss_pred HHhChHHHHHhhCCCCC
Q 012618 239 LKYKHQACAALLNPSSA 255 (460)
Q Consensus 239 ~~~~~~~i~~~Ll~~ga 255 (460)
.. ++.+++++|+++||
T Consensus 149 ~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 149 KD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CT-TCHHHHHHHHTC--
T ss_pred hc-CChHHHHHHhhccc
Confidence 55 66677777776665
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=9.7e-29 Score=213.79 Aligned_cols=149 Identities=24% Similarity=0.361 Sum_probs=81.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN 92 (460)
Q Consensus 13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~ 92 (460)
++|+.|+..|+.++|++|+++|+++. .+..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+..
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRA---GVSRDARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHc
Confidence 45555555555555555555555442 134455555555555555555555555 555555555555555555555
Q ss_pred CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcC
Q 012618 93 GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172 (460)
Q Consensus 93 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g 172 (460)
|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|
T Consensus 78 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~g~t~l~~A~~~~ 144 (153)
T 1awc_B 78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD------------VHTQSKFCKTAFDISIDNG 144 (153)
T ss_dssp TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTT
T ss_pred ChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------ccccCCCCCCHHHHHHHcC
Confidence 5555555555555554 44444555555555555555555555555544 4445555555555555555
Q ss_pred CHHHHHHH
Q 012618 173 WSECVHTL 180 (460)
Q Consensus 173 ~~~~v~~L 180 (460)
+.+++++|
T Consensus 145 ~~~i~~~L 152 (153)
T 1awc_B 145 NEDLAEIL 152 (153)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 55555544
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.5e-30 Score=242.68 Aligned_cols=190 Identities=19% Similarity=0.186 Sum_probs=116.5
Q ss_pred CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA 124 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~ 124 (460)
.|.||||.|+..++.++++.||++ |++++.. ..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~---g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAH---GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhcc---CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 466777777777777777777777 7777643 56677777777777777777777777766 666677777777777
Q ss_pred HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCC-hHHH
Q 012618 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS-TPLH 203 (460)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~-TpLh 203 (460)
..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+..+..|. ||||
T Consensus 79 ~~g~~~~v~~Ll~~ga~------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~~~~t~l~ 142 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVN------------VNAADSDGWTPLHCAASCNNVQVCKFLVESGA----AVFAMTYSDMQTAAD 142 (239)
T ss_dssp HHTCHHHHHHHHHHTCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCSSSCCCHHH
T ss_pred HcCCHHHHHHHHHcCCC------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CcceecCCCCcchHH
Confidence 77777777777777776 67777788888888888888888888888887 3444454555 8888
Q ss_pred HH--HhcCCHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHHHhChHHHHHhhCCCCCCC
Q 012618 204 FA--ARGGSLECIRELLAWGADRVQP---------DAFGRIPYAIALKYKHQACAALLNPSSAEP 257 (460)
Q Consensus 204 ~A--~~~g~~~~v~~Ll~~gad~~~~---------d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~ 257 (460)
+| +..|+.+++++|+++|++++.. +..+.+++++|+..|. ++++|.+.+.+.
T Consensus 143 ~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~ 205 (239)
T 1ycs_B 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDE 205 (239)
T ss_dssp HCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSC
T ss_pred HHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCC
Confidence 87 6777888888888888777665 5667888888877765 667776666543
No 75
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=4.8e-31 Score=246.00 Aligned_cols=209 Identities=16% Similarity=0.117 Sum_probs=150.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618 9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV 88 (460)
Q Consensus 9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~ 88 (460)
..|.|||+.|+..|+.++++.|+++|++++.. ..|.||||+|+..|+.++|++|++. +++++..|..|.||||+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYE---VDDPSLPNDEGITALHN 76 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTST---TSSCCCCCTTSCCHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHH
Confidence 46899999999999999999999999998542 4678999999999999999999999 99999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-CHHHH
Q 012618 89 AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA-TPLHL 167 (460)
Q Consensus 89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~-t~L~~ 167 (460)
|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|++.+++ ++.++..|. ||||+
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~~~~t~l~~ 143 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA------------VFAMTYSDMQTAADK 143 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCSSSCCCHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------cceecCCCCcchHHH
Confidence 99999999999999999998 77888999999999999999999999999998 788888877 99999
Q ss_pred H--HHcCCHHHHHHHHHcCCccccC-----CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC------CCCCCCCCCH
Q 012618 168 A--ARQGWSECVHTLLDNGALACSS-----TGGNGYPGSTPLHFAARGGSLECIRELLAWGADR------VQPDAFGRIP 234 (460)
Q Consensus 168 A--~~~g~~~~v~~Ll~~ga~~~~~-----~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~------~~~d~~G~tp 234 (460)
| +..|+.+++++|+++|++++.. ....+..+.+++++++..|. +++.|.+.+.+. ...+..|.+|
T Consensus 144 a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P 221 (239)
T 1ycs_B 144 CEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVP 221 (239)
T ss_dssp CCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEE
T ss_pred HHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEee
Confidence 9 7889999999999999966432 12336788999999998886 555555555441 2345566777
Q ss_pred HHHH
Q 012618 235 YAIA 238 (460)
Q Consensus 235 L~~A 238 (460)
..+.
T Consensus 222 ~~yv 225 (239)
T 1ycs_B 222 RNLL 225 (239)
T ss_dssp GGGE
T ss_pred hHHe
Confidence 6654
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.6e-28 Score=212.82 Aligned_cols=152 Identities=32% Similarity=0.431 Sum_probs=80.6
Q ss_pred ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126 (460)
Q Consensus 47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 126 (460)
.|+||.|+..|+.+++++|++. .+.+++..+..|.||||+ +..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred chHHHHHHHhCCHHHHHHHHHh--hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 3555555555555555555554 134555555555555555 5555555555555555554 44444555555555555
Q ss_pred CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA 206 (460)
Q Consensus 127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~ 206 (460)
|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++ + +.+..|..|.||||+|+
T Consensus 79 ~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~----~~~~~~~~g~t~l~~A~ 141 (156)
T 1bd8_A 79 GFLDTLKVLVEHGAD------------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S----DLHRRDARGLTPLELAL 141 (156)
T ss_dssp TCHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S----CTTCCCTTSCCHHHHHH
T ss_pred CcHHHHHHHHHcCCC------------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c----CCCCcCCCCCCHHHHHH
Confidence 555555555555544 445555555555555555555555555554 3 33334444555555555
Q ss_pred hcCCHHHHHHHHH
Q 012618 207 RGGSLECIRELLA 219 (460)
Q Consensus 207 ~~g~~~~v~~Ll~ 219 (460)
..|+.+++++|++
T Consensus 142 ~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 142 QRGAQDLVDILQG 154 (156)
T ss_dssp HSCCHHHHHHHHT
T ss_pred HcCcHHHHHHHHh
Confidence 5555555555543
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2.8e-28 Score=211.35 Aligned_cols=155 Identities=26% Similarity=0.332 Sum_probs=142.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
++.|+|+.|+..|+.+++++|++. ........+..|.||||+ +..|+.+++++|++. |++++.+|..|.||||+|
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ---GASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHH
Confidence 356899999999999999999998 422223345689999999 999999999999999 999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++. ++ ++.+|..|.||||+|+
T Consensus 76 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~------------~~~~~~~g~t~l~~A~ 141 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD------------LHRRDARGLTPLELAL 141 (156)
T ss_dssp HHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC------------TTCCCTTSCCHHHHHH
T ss_pred HHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC------------CCCcCCCCCCHHHHHH
Confidence 9999999999999999988 77888999999999999999999999998 66 7899999999999999
Q ss_pred HcCCHHHHHHHHHc
Q 012618 170 RQGWSECVHTLLDN 183 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~ 183 (460)
..|+.+++++|+++
T Consensus 142 ~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 142 QRGAQDLVDILQGH 155 (156)
T ss_dssp HSCCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHhh
Confidence 99999999999975
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1e-31 Score=248.92 Aligned_cols=189 Identities=18% Similarity=0.154 Sum_probs=167.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM 87 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~ 87 (460)
+..+.|+||+|+..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++. |++++..|..|+||||
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~tpLh 92 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ--PNEEGITALHNAICGANYSIVDFLITA---GANVNSPDSHGWTPLH 92 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHH
Confidence 44677899999999999999999999998855 356899999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH--HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHH
Q 012618 88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA--AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165 (460)
Q Consensus 88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L 165 (460)
+|+..|+.+++++|++.|+++....+..|+||||+| +..|+.+++++|++.+++ ++.+|..|.|+|
T Consensus 93 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~------------~~~~~~~~~~~l 160 (229)
T 2vge_A 93 CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS------------MGLMNSGAVYAL 160 (229)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH------------TTTSGGGEEEES
T ss_pred HHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC------------cccccCCchHHH
Confidence 999999999999999999999555557999999999 999999999999999988 788888999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 012618 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218 (460)
Q Consensus 166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll 218 (460)
+.++.... +++|++.|++++ .+.+|..|+||||+|+..|+.++|+.++
T Consensus 161 ~~~~~~~~---~~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 161 WDYSAEFG---DELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp SCBCCSST---TBCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred HHHhhccc---cccCcccccccc--ccccCCCcccHHHHHHHcCCcceeehhh
Confidence 86655543 368888998642 4557788999999999999999997654
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=7.4e-30 Score=252.97 Aligned_cols=213 Identities=19% Similarity=0.122 Sum_probs=156.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC---CccCCCCCC
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLG-MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN---TDALNRYKQ 83 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---~~~~~~~g~ 83 (460)
+..+.||||+|++.|+.++|++|+++|+.... ...+..|.||||+|+.+|+.++|++|+++ |++ .+..+.+ .
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~---gad~~~~~i~~~~-~ 164 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL---APTEIMAMIQAEN-Y 164 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS---CTTTHHHHHSHHH-H
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC---CCCccccccCCCC-C
Confidence 34567899999999999999999998873211 01123467899999999999999999998 765 2333333 8
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCcccc-CCCCCCChHHHHHH-HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618 84 TPLMVAAMNGKLSCVKKLIESGAFILN-FDSLQGRTCLHYAA-YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161 (460)
Q Consensus 84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g 161 (460)
||||+|+..|+.++|++|+++|+++.. ..+..|.||||+|+ ..|+.++|++|++.++ .|
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------------------~~ 225 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------------------ML 225 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------------------HH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------------------cc
Confidence 999999999999999999999988632 15567899999999 9999999999988653 27
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC---------------------------CHHHH
Q 012618 162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG---------------------------SLECI 214 (460)
Q Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g---------------------------~~~~v 214 (460)
.||||+|+..|+.+++++|+++|++++... +++++|+.+| ..+.+
T Consensus 226 ~taL~~Aa~~g~~evv~lL~~~ga~~~~~~--------~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~ 297 (376)
T 2aja_A 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMH--------DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI 297 (376)
T ss_dssp HHHHHCTTTTTTTTHHHHHHHHHHHHHHHH--------TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred chHHHHHHHCCCHHHHHHHHhcCccccccc--------HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHH
Confidence 789999999999999999999988653211 2333333333 34455
Q ss_pred HHHHHc---------CCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 215 RELLAW---------GADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 215 ~~Ll~~---------gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
++|++. |+++ ..+.|||++|+..|+.+++++|++.+.
T Consensus 298 ~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~~ 343 (376)
T 2aja_A 298 RFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIPS 343 (376)
T ss_dssp HHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred HHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcChH
Confidence 666653 3333 345689999999999999999998753
No 80
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.7e-30 Score=257.51 Aligned_cols=225 Identities=18% Similarity=0.116 Sum_probs=148.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc--CCCCCCc
Q 012618 8 RERSESALFVAVENGDLQMIEAMVEADPTVLGM-TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA--LNRYKQT 84 (460)
Q Consensus 8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--~~~~g~t 84 (460)
+..|.||||+|+..|+.++|++|+++|+++... ....+ .||||+|+..|+.++|++|+++ |++++. .|..|.|
T Consensus 125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~---ga~~~~~~~d~~g~T 200 (376)
T 2aja_A 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL---APTEATAMIQAENYY 200 (376)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS---CGGGHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc---CCccchhccCCCCCC
Confidence 446788999999999999999999999752110 01112 7999999999999999999999 999887 8888999
Q ss_pred HHHHHH-HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-
Q 012618 85 PLMVAA-MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA- 162 (460)
Q Consensus 85 pL~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~- 162 (460)
|||+|+ ..|+.++|++|++.|+ .|.||||+|+..|+.+++++|++.+++....... +......|.
T Consensus 201 pL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~-----l~~A~~~g~~ 267 (376)
T 2aja_A 201 AFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA-----FKLSNPDGVF 267 (376)
T ss_dssp HHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTT-----TTTTSSSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHH-----HHHHHHCCCh
Confidence 999999 9999999999999764 2789999999999999999999998752110000 111111111
Q ss_pred ---CH---------HHHHHHc---CCHHHHHHHHHcCCc-cccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 012618 163 ---TP---------LHLAARQ---GWSECVHTLLDNGAL-ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226 (460)
Q Consensus 163 ---t~---------L~~A~~~---g~~~~v~~Ll~~ga~-~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 226 (460)
++ +...+.. +..+.+++|++.+.. ...........+.||||+|+..|+.++|++|++.| ..
T Consensus 268 ~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v 344 (376)
T 2aja_A 268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SV 344 (376)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HH
T ss_pred hhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HH
Confidence 11 1111122 235667777764321 11111222335679999999999999999999875 56
Q ss_pred CCCCCCCHHHHHHHhChHHHHHhhCC
Q 012618 227 PDAFGRIPYAIALKYKHQACAALLNP 252 (460)
Q Consensus 227 ~d~~G~tpL~~A~~~~~~~i~~~Ll~ 252 (460)
++..+.|++.+|-..|+.+++++-+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 345 LALTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp HHSCC---------------------
T ss_pred HHHHHHhccccccccccccHHHHHHH
Confidence 67889999999999999998876544
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=9.6e-27 Score=197.19 Aligned_cols=134 Identities=26% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCc
Q 012618 72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS 151 (460)
Q Consensus 72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 151 (460)
+++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+. |+.+++++|++.+++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---------- 69 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---------- 69 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC----------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC----------
Confidence 3456666666666666666666666666666666655 4555566666666666 666666666666655
Q ss_pred cccccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618 152 RFVNIRDES-GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223 (460)
Q Consensus 152 ~~v~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 223 (460)
++.+|.. |.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..++.+++++|+++|+|
T Consensus 70 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 70 --PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp --SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCC----CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred --CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5666666 6666666666666666666666666 3444555666666666666666666666666654
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=6.7e-27 Score=202.99 Aligned_cols=144 Identities=24% Similarity=0.211 Sum_probs=90.7
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccccc
Q 012618 77 ALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNI 156 (460)
Q Consensus 77 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~ 156 (460)
..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+ .|+.+++++|++.+++ ++.
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~------------~~~ 72 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------------PNC 72 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------------CCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC------------CCC
Confidence 34556677777777777777777777777666 555667777777764 6777777777777666 677
Q ss_pred CCCCCCC-HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 012618 157 RDESGAT-PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235 (460)
Q Consensus 157 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL 235 (460)
+|..|.| |||+|+..|+.+++++|+++|+ +.+.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.
T Consensus 73 ~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148 (156)
T ss_dssp CCTTTCCCHHHHHHHHTCHHHHHHHHHHTC----CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------
T ss_pred cCCCCCcHHHHHHHHCCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence 7777777 7777777777777777777777 4455666777888888777788888888888888777777777776
Q ss_pred HHH
Q 012618 236 AIA 238 (460)
Q Consensus 236 ~~A 238 (460)
+.+
T Consensus 149 ~~~ 151 (156)
T 1bi7_B 149 EGP 151 (156)
T ss_dssp ---
T ss_pred ccC
Confidence 643
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=1.2e-26 Score=196.61 Aligned_cols=130 Identities=26% Similarity=0.313 Sum_probs=123.5
Q ss_pred cCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 012618 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS 189 (460)
Q Consensus 110 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 189 (460)
+..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+. |+.+++++|+++|+
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~---- 68 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGAD------------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA---- 68 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC----
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC------------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC----
Confidence 67788999999999999999999999999987 89999999999999999 99999999999999
Q ss_pred CCCCCCCC-CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCC
Q 012618 190 STGGNGYP-GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256 (460)
Q Consensus 190 ~~~~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~ 256 (460)
+.+..|.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++||+
T Consensus 69 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 55667778 99999999999999999999999999999999999999999999999999999998874
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=6.7e-27 Score=209.29 Aligned_cols=156 Identities=15% Similarity=0.043 Sum_probs=85.1
Q ss_pred cHHHHHHHcCcHHHHHHHHhccCCCCCCccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCccccCCCCCCChHHHH
Q 012618 48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALN-RYKQTPLMVAAMNGKL----SCVKKLIESGAFILNFDSLQGRTCLHY 122 (460)
Q Consensus 48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~~g~tpL~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 122 (460)
++|+.|+..|+++.++.++.. + ++..+ ..|+||||+|+.+++. +++++|++.|+++ +..+..|+||||+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~---~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~ 81 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEK---G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP 81 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHH---S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhc---C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence 445555555555554444443 2 12222 3345555555554442 2455555555544 4444455555555
Q ss_pred HHHcCC------HHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-CHHHHHHHcC-----CHHHHHHHHH-cCCcccc
Q 012618 123 AAYYGH------SDCLQALLTAARTSPVANTWGFSRFVNIRDESGA-TPLHLAARQG-----WSECVHTLLD-NGALACS 189 (460)
Q Consensus 123 A~~~g~------~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~ga~~~~ 189 (460)
|+..++ .+++++|++.|++ +|.+|..|. ||||+|+..+ ..+++++|++ +|+
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gad------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga---- 145 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGAD------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL---- 145 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCC------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC----
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCC------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC----
Confidence 554443 3556666666665 566666666 6666666633 2356666666 666
Q ss_pred CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618 190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225 (460)
Q Consensus 190 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 225 (460)
+++.+|..|.||||+|++.|+.++|++|+++..+.+
T Consensus 146 d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 445556666677777777777777766666544333
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=2.2e-26 Score=206.00 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=138.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCH----HHHHHHHHhcCCCCCcccCCCccccccC
Q 012618 82 KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS----DCLQALLTAARTSPVANTWGFSRFVNIR 157 (460)
Q Consensus 82 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~~~~~v~~~ 157 (460)
++++|+.|+..|+.+.++.++..+.+. ..+..|+||||+|+..|+. +++++|++.|++ +|.+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad------------vn~~ 71 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD------------IKSR 71 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC------------SSCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC------------CCCC
Confidence 568999999999999999999988653 2235799999999999975 599999999998 8999
Q ss_pred CCCCCCHHHHHHHcCC------HHHHHHHHHcCCccccCCCCCCCCCC-hHHHHHHhcC-----CHHHHHHHHH-cCCCC
Q 012618 158 DESGATPLHLAARQGW------SECVHTLLDNGALACSSTGGNGYPGS-TPLHFAARGG-----SLECIRELLA-WGADR 224 (460)
Q Consensus 158 d~~g~t~L~~A~~~g~------~~~v~~Ll~~ga~~~~~~~~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~gad~ 224 (460)
|..|+||||+|+..++ .+++++|+++|+ +++.+|..|. ||||+|+..+ +.+++++|++ +|+|+
T Consensus 72 d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga----din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~ 147 (186)
T 3t8k_A 72 TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA----DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147 (186)
T ss_dssp CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC----CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC----CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence 9999999999999987 689999999999 6667788999 9999999944 4679999999 99999
Q ss_pred CCCCCCCCCHHHHHHHhChHHHHHhhCCC
Q 012618 225 VQPDAFGRIPYAIALKYKHQACAALLNPS 253 (460)
Q Consensus 225 ~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ 253 (460)
+.+|..|+||||+|++.++.+++++|.++
T Consensus 148 ~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 148 LIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp TCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999654
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=7.6e-26 Score=196.33 Aligned_cols=139 Identities=27% Similarity=0.296 Sum_probs=89.0
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCh-HHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT-CLHY 122 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~ 122 (460)
..|.||||+|+..|+.++|++|+++ |++++..+..|.||||+|+ .|+.+++++|++.|+++ +..+..|+| |||+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEA---GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTT---TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 4566777777777777777777776 6777777777777777764 67777777777777766 556666776 7777
Q ss_pred HHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618 123 AAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202 (460)
Q Consensus 123 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL 202 (460)
|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+..+..|.||.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~------------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGAR------------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG----GTRGSNHARIDAA 148 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCC------------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHCCCHHHHHHHHHcCCC------------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC----CCCccCcCcCccc
Confidence 7777777777777777766 66677777777777777777777777777777 4444555666666
Q ss_pred H
Q 012618 203 H 203 (460)
Q Consensus 203 h 203 (460)
+
T Consensus 149 ~ 149 (156)
T 1bi7_B 149 E 149 (156)
T ss_dssp -
T ss_pred c
Confidence 5
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=8.6e-25 Score=181.56 Aligned_cols=126 Identities=44% Similarity=0.621 Sum_probs=119.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN 194 (460)
Q Consensus 115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~ 194 (460)
+|+||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|+++|+ +.+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~ 64 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAK 64 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC----CCccc
Confidence 489999999999999999999999887 78899999999999999999999999999999 55667
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCC
Q 012618 195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256 (460)
Q Consensus 195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~ 256 (460)
+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++||+
T Consensus 65 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 78899999999999999999999999999999999999999999999999999999999974
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.9e-24 Score=179.44 Aligned_cols=125 Identities=49% Similarity=0.685 Sum_probs=60.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618 82 KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161 (460)
Q Consensus 82 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g 161 (460)
|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.+.+ ++.+|..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g 68 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNG 68 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTS
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------------CcccCCCC
Confidence 444444444444444444444444443 33334444444444444444444444444444 44444455
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618 162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223 (460)
Q Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 223 (460)
.||||+|+..++.+++++|+++|+ +.+..|..|.||||+|+..++.+++++|+++|+|
T Consensus 69 ~t~l~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 69 RTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CcHHHHHHHcChHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 555555555555555555555554 2333444455555555555555555555555543
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=7.4e-25 Score=185.49 Aligned_cols=126 Identities=36% Similarity=0.438 Sum_probs=118.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC
Q 012618 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG 192 (460)
Q Consensus 113 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 192 (460)
...+.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~ 74 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGAD------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA----DVN 74 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTT
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCC
Confidence 35688999999999999999999999987 89999999999999999999999999999999 556
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254 (460)
Q Consensus 193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g 254 (460)
..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|
T Consensus 75 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999999999999999998775
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.6e-24 Score=183.40 Aligned_cols=125 Identities=29% Similarity=0.373 Sum_probs=100.4
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
..+.||||+|+..|+.+++++|++. +++++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 87 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMAN---GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA 87 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 4567888888888888888888887 7888888888888888888888888888888888876 66667788888888
Q ss_pred HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 012618 124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG 184 (460)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (460)
+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGAD------------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCC------------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 888888888888888776 6777888888888888888888888888765
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=4.1e-25 Score=187.20 Aligned_cols=129 Identities=30% Similarity=0.467 Sum_probs=110.7
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccC
Q 012618 111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS 190 (460)
Q Consensus 111 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~ 190 (460)
..+..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~ 68 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD------------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKA----L 68 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----C
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----c
Confidence 4567888999999988999999999888877 78888899999999999999999999999998 5
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 191 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..+++++|.+.+.
T Consensus 69 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 56677889999999999999999999999999999999999999999999999999998877664
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=2.3e-25 Score=198.63 Aligned_cols=109 Identities=29% Similarity=0.379 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-C
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-E 159 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~ 159 (460)
.|.||||+|+..|+.+++++|++ |+++ +..+..|+||||+|+..|+.+++++|++.+++ ++.++ .
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~ 108 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------------LDHRDMR 108 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCSS
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCcCCCC
Confidence 34455555555555555555544 4443 33444455555555555555555555554444 34444 4
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHh
Q 012618 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR 207 (460)
Q Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~ 207 (460)
.|.||||+|+..|+.+++++|+++|+ +.+.+|..|.||||+|++
T Consensus 109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 109 GGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTALELARE 152 (183)
T ss_dssp SSCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHhcCcHHHHHHHHHcCC----CCcCCCCCCCCHHHHHHH
Confidence 45555555555555555555555554 333344445555555543
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=2.1e-24 Score=182.77 Aligned_cols=131 Identities=26% Similarity=0.307 Sum_probs=81.8
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcc
Q 012618 73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSR 152 (460)
Q Consensus 73 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 152 (460)
+++ .+|..|+||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------- 68 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL----------- 68 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----------
Confidence 344 45566666666666666666666666666665 55556666666666666666666666666655
Q ss_pred ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618 153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221 (460)
Q Consensus 153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 221 (460)
++.+|..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||+|+..+..+++++|.+.+
T Consensus 69 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 69 -VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA----SRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp -TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred -ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 56666666677777776666677777776666 44455666667777776666666666665543
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=200.46 Aligned_cols=142 Identities=20% Similarity=0.207 Sum_probs=123.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCccccC-----CCCCCChHHHHHHHc---CCHHHHHHHHHhcCCCCCcccCCCcc
Q 012618 81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNF-----DSLQGRTCLHYAAYY---GHSDCLQALLTAARTSPVANTWGFSR 152 (460)
Q Consensus 81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~ 152 (460)
...++|+.|+..|+.+.++.|++.|+++... .+..|+||||+|+.. |+.+++++|++.+++
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad----------- 218 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH----------- 218 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-----------
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-----------
Confidence 3457899999999999999999999998432 578999999999997 899999999999998
Q ss_pred ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618 153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232 (460)
Q Consensus 153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~ 232 (460)
+|.+|..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..++.+++++|+++|++ .|.
T Consensus 219 -vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~ 287 (301)
T 2b0o_E 219 -LDAKAADGNTALHYAALYNQPDCLKLLLKGRA----LVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFA 287 (301)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTS
T ss_pred -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCC
Confidence 89999999999999999999999999999999 5667888999999999999999999999999987 578
Q ss_pred CHHHHHHHhChH
Q 012618 233 IPYAIALKYKHQ 244 (460)
Q Consensus 233 tpL~~A~~~~~~ 244 (460)
||||+|+.+|+.
T Consensus 288 tpLh~A~~~g~~ 299 (301)
T 2b0o_E 288 FPLHVDYSWVIS 299 (301)
T ss_dssp SCCC--------
T ss_pred ChhHHHHhcCCc
Confidence 999999988763
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=201.56 Aligned_cols=139 Identities=24% Similarity=0.302 Sum_probs=123.5
Q ss_pred ccHHHHHHHcCcHHHHHHHHhccCCCCCCcc------CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCC
Q 012618 47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDA------LNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILNFDSLQGR 117 (460)
Q Consensus 47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~------~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~ 117 (460)
.++|+.|+..|+.+.|+.|++. +++++. .+..|.||||+|+.. ++.+++++|+++|+++ +..|..|+
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~---g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~ 227 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFAN---GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 227 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT---TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred HHHHhhhhhccCHHHHHHHHhc---CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence 4679999999999999999998 999988 689999999999997 8999999999999998 77889999
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCC
Q 012618 118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP 197 (460)
Q Consensus 118 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~ 197 (460)
||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++ .
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad------------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~ 285 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRAL------------VGTVNEAGETALDIARKKHHKECEELLEQAQAG----------T 285 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC------------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------T
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------C
Confidence 999999999999999999999998 899999999999999999999999999999983 4
Q ss_pred CChHHHHHHhcCCH
Q 012618 198 GSTPLHFAARGGSL 211 (460)
Q Consensus 198 g~TpLh~A~~~g~~ 211 (460)
|.||||+|+..|+.
T Consensus 286 g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 286 FAFPLHVDYSWVIS 299 (301)
T ss_dssp TSSCCC--------
T ss_pred CCChhHHHHhcCCc
Confidence 78999999998764
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=1.4e-23 Score=196.15 Aligned_cols=171 Identities=26% Similarity=0.284 Sum_probs=134.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618 11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA 90 (460)
Q Consensus 11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~ 90 (460)
+.+++++++..|+.+.+..+...+.++ +.+|.||||+|+..|+.++|++|++ ++++|.+|..|+||||+|+
T Consensus 15 ~~~~~l~~~~~g~~~~~~~~~~~~~~~-----~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~d~~g~t~L~~A~ 85 (244)
T 3ui2_A 15 GAMEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPWWTAARKADEQALSQLLE----DRDVDAVDENGRTALLFVA 85 (244)
T ss_dssp TEEEEEEEESSCCCCEEEEGGGSCHHH-----HHHHHHHHHHHHTTTCHHHHHHTTT----TCCTTCBCTTSCBHHHHHH
T ss_pred CccHHHHHHHcCCCccccccccccccc-----ccCCCCHHHHHHHcCCHHHHHHHHc----CCCCCCcCCCCCCHHHHHH
Confidence 334444444555554444433333333 1357899999999999999999998 6788999999999999999
Q ss_pred HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH
Q 012618 91 MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170 (460)
Q Consensus 91 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~ 170 (460)
..|+.++|++|++.|+++....+..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+.
T Consensus 86 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 86 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------IEVEDERGLTALELARE 153 (244)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------CCCCCCCCCcHHHHHHH
Confidence 999999999999999988444447899999999999999999999999888 78899999999999986
Q ss_pred cCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223 (460)
Q Consensus 171 ~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 223 (460)
.+.. ..+.||||+|+..|+.+++++|++++.+
T Consensus 154 ~~~~---------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 154 ILKT---------------------TPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHTT---------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHhc---------------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 3221 2467999999999999999999987654
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=6.9e-25 Score=204.95 Aligned_cols=169 Identities=21% Similarity=0.195 Sum_probs=143.3
Q ss_pred CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618 45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA 124 (460)
Q Consensus 45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~ 124 (460)
.+.+++.++...|+.+.+..+... +.+ .+..|.||||+|+..|+.+++++|++ |+++ +..+..|+||||+|+
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~---~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~ 85 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYI---AAD---VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA 85 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGS---CHH---HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred CCccHHHHHHHcCCCccccccccc---ccc---cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence 345667777777776666554443 322 34578999999999999999999999 8887 778889999999999
Q ss_pred HcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203 (460)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh 203 (460)
..|+.+++++|++.+++ ++.++ ..|.||||+|+..|+.+++++|+++|+ +.+..|..|.||||
T Consensus 86 ~~g~~~~v~~Ll~~ga~------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~t~l~ 149 (244)
T 3ui2_A 86 GLGSDKCVRLLAEAGAD------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTALE 149 (244)
T ss_dssp HHTCHHHHHHHHHTTCC------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCHHH
T ss_pred HCCCHHHHHHHHHcCCC------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCcHHH
Confidence 99999999999999998 78888 889999999999999999999999999 55677889999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254 (460)
Q Consensus 204 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g 254 (460)
+|+..+ ....+.|||++|+..|+.+++++|++++
T Consensus 150 ~A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 150 LAREIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp HHHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 998622 1256889999999999999999998753
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=3.3e-23 Score=184.61 Aligned_cols=140 Identities=30% Similarity=0.355 Sum_probs=123.9
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
.+|.||||+|+..|+.+++++|++ +++++.+|..|+||||+|+..|+.+++++|++.|+++....+..|+||||+|
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 367899999999999999999998 6789999999999999999999999999999999998444448899999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618 124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203 (460)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh 203 (460)
+..|+.+++++|++.+++ ++.+|..|.||||+|+..++. ..+.+||+
T Consensus 118 ~~~~~~~~v~~Ll~~ga~------------~~~~d~~g~tpl~~A~~~~~~---------------------~~~~~~l~ 164 (183)
T 3deo_A 118 AGYVRPEVVEALVELGAD------------IEVEDERGLTALELAREILKT---------------------TPKGNPMQ 164 (183)
T ss_dssp HHTTCHHHHHHHHHHTCC------------TTCCCTTSCCHHHHHHHHHHT---------------------CCCCSHHH
T ss_pred HhcCcHHHHHHHHHcCCC------------CcCCCCCCCCHHHHHHHhccC---------------------cccccHHH
Confidence 999999999999999988 889999999999999975321 13569999
Q ss_pred HHHhcCCHHHHHHHHHc
Q 012618 204 FAARGGSLECIRELLAW 220 (460)
Q Consensus 204 ~A~~~g~~~~v~~Ll~~ 220 (460)
+|+..|+.+++++|.++
T Consensus 165 ~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 165 FGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHcCHHHHHHHHHHh
Confidence 99999999999999765
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=4.2e-23 Score=171.41 Aligned_cols=117 Identities=26% Similarity=0.288 Sum_probs=106.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCC
Q 012618 114 LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193 (460)
Q Consensus 114 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~ 193 (460)
..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~ 68 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGED------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA----DINA 68 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCC------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC----CTTC
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCc
Confidence 4688999999999999999999999887 89999999999999999999999999999999 5667
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHH
Q 012618 194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246 (460)
Q Consensus 194 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i 246 (460)
.|..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|...+..++
T Consensus 69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 78899999999999999999999999999999999999999999955444443
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.1e-23 Score=193.57 Aligned_cols=131 Identities=24% Similarity=0.197 Sum_probs=81.6
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCccccCCC
Q 012618 114 LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN-GALACSSTG 192 (460)
Q Consensus 114 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~ 192 (460)
..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.++|++|++. |+ +.+
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~----~~~ 134 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVG------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI----ELN 134 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC----CCC
T ss_pred cccccccccccccCcHHHHHHHHhCCCC------------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC----Ccc
Confidence 3566667777666666677766666655 566666677777777777777777777766 66 445
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW 260 (460)
Q Consensus 193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~ 260 (460)
..|..|.||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..++.++++.|+..++.....
T Consensus 135 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~ 202 (222)
T 3ehr_A 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202 (222)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence 55666677777777777777777777777777777777777777777777777777777766655543
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=3.8e-23 Score=189.93 Aligned_cols=133 Identities=26% Similarity=0.342 Sum_probs=107.2
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCC-----CCChHHHHHHHcCCHHHHHHHHHh-cCCCCCcccCCCc
Q 012618 78 LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSL-----QGRTCLHYAAYYGHSDCLQALLTA-ARTSPVANTWGFS 151 (460)
Q Consensus 78 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~ 151 (460)
.+..|.||||+|+..|+.+++++|++.|+ +. .|+||||+|+..|+.+++++|++. +++
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---------- 132 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRV------GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---------- 132 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC----------
T ss_pred cccccccccccccccCcHHHHHHHHhCCC------CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC----------
Confidence 45678999999999999999999999875 34 378999999999999999999998 777
Q ss_pred cccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 012618 152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231 (460)
Q Consensus 152 ~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G 231 (460)
++.+|..|.||||+|+..|+.+++++|+++|+ +.+.+|..|.||||+|+..++.++++.|++.|++.+..+..+
T Consensus 133 --~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 133 --LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA----RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp --CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC----CSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred --ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 89999999999999999999999999999999 566778899999999999999999999999999998877665
Q ss_pred C
Q 012618 232 R 232 (460)
Q Consensus 232 ~ 232 (460)
+
T Consensus 207 ~ 207 (222)
T 3ehr_A 207 Y 207 (222)
T ss_dssp -
T ss_pred h
Confidence 4
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=6.3e-22 Score=188.48 Aligned_cols=131 Identities=24% Similarity=0.235 Sum_probs=76.1
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCccccCCCC
Q 012618 117 RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ---GWSECVHTLLDNGALACSSTGG 193 (460)
Q Consensus 117 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~ 193 (460)
.++|+.|+..|+.+.++.+++.+.+..... .++..|..|.||||+|+.. |+.+++++|+++|+ +++.
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga----~in~ 200 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG----NLDK 200 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS----CTTC
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhc------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCC----Cccc
Confidence 345555555555555555555554432111 1344455566666666665 56666666666666 3344
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCC
Q 012618 194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257 (460)
Q Consensus 194 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~ 257 (460)
+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..++.+++++|+++|++.
T Consensus 201 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 4555666666666666666666666666666666666666666666666666666666665543
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=3.6e-22 Score=190.13 Aligned_cols=198 Identities=19% Similarity=0.122 Sum_probs=138.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618 7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL 86 (460)
Q Consensus 7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL 86 (460)
.+..+.+.|+.+...|+..+.+++...-+....... ..+... ......-..+++...+ ....+.......++|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP-~~~s~~----~~~~~fI~aKYl~~~f--~~~~~~~~~~~l~~l 134 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKP-NPGSDM----IARKDYITAKYMERRY--ARKKHADTAAKLHSL 134 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSC-CTTCCH----HHHHHHHHHHHTTCTT--SCCCSSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCC-CCCCCH----HHHHHHHHHHHHHhhc--ccccccccchhhhhh
Confidence 355667777777777777766655443322211110 011111 1222222333444432 111222222345799
Q ss_pred HHHHHcCCHHHHHHHHHcCCccc-----cCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618 87 MVAAMNGKLSCVKKLIESGAFIL-----NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161 (460)
Q Consensus 87 ~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g 161 (460)
+.|+..|+.+.++.+++.|+++. +..+..|+||||+|+..++..-++.+--.- .....+|.+|..|
T Consensus 135 ~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll---------~~ga~in~~d~~g 205 (278)
T 1dcq_A 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV---------QNSGNLDKQTGKG 205 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH---------HHCSCTTCCCTTC
T ss_pred hhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH---------HCCCCccccCCCC
Confidence 99999999999999999999863 444789999999999988644444432221 2345688999999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 012618 162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADR 224 (460)
Q Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 224 (460)
.||||+|+..|+.++|++|+++|+ +++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKA----SIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCC----CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999999999 66777889999999999999999999999999864
No 104
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=1.6e-22 Score=167.80 Aligned_cols=108 Identities=31% Similarity=0.437 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
.|.|+||+|+..|+.++|++|++.+++++.. +..|.||||+|+..|+.+++++|++. +++++.+|..|+||||+|
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSA 80 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHHH
Confidence 3444555555555555555555544444221 23444555555555555555555544 444444444455555555
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
+..|+.+++++|+++|+++ +..+..|.||||+|
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence 5555555555555544444 34444444555444
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=1.6e-21 Score=192.35 Aligned_cols=144 Identities=23% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHHcCCccccCCC--CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC
Q 012618 81 YKQTPLMVAAMN-GKLSCVKKLIESGAFILNFDS--LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR 157 (460)
Q Consensus 81 ~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~ 157 (460)
.+.|+||.|+.. ++.+++++|++.|+++ +..+ ..|.||||+|+..|+.+++++|++.+++ +|.+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad------------vn~~ 264 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN------------VNQA 264 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCC
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC------------CCCC
Confidence 344566666665 6666666666666655 3333 4556666666666666666666666555 5556
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCCH
Q 012618 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG---ADRVQPDAFGRIP 234 (460)
Q Consensus 158 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~tp 234 (460)
|..|.||||+|+..|+.+++++||++|+ +.+..|..|.||||+|+..++.+++++|+..+ ++....+..+.|+
T Consensus 265 d~~G~TpLh~A~~~g~~~~v~~LL~~Ga----d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~ 340 (368)
T 3jue_A 265 DSAGRGPLHHATILGHTGLACLFLKRGA----DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY 340 (368)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHCcC----CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCH
Confidence 6666666666666666666666666665 33444555666666666666666666666554 2223334455556
Q ss_pred HHHHHHh
Q 012618 235 YAIALKY 241 (460)
Q Consensus 235 L~~A~~~ 241 (460)
++++...
T Consensus 341 l~i~~~~ 347 (368)
T 3jue_A 341 LDIFRDF 347 (368)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5555444
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=3.6e-21 Score=198.43 Aligned_cols=130 Identities=22% Similarity=0.224 Sum_probs=107.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCccccCC------CCCCChHHHHHHH---cCCHHHHHHHHHhcCCCCCcccCCCcc
Q 012618 82 KQTPLMVAAMNGKLSCVKKLIESGAFILNFD------SLQGRTCLHYAAY---YGHSDCLQALLTAARTSPVANTWGFSR 152 (460)
Q Consensus 82 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~------~~~g~t~L~~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 152 (460)
..+.||.|+..|+.++|+.|++.|+++ +.. +..|+||||+|+. .|+.+++++|++.|++
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~----------- 199 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH----------- 199 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-----------
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-----------
Confidence 347799999999999999999999887 433 6788999999966 8889999999999887
Q ss_pred ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 012618 153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD 228 (460)
Q Consensus 153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 228 (460)
+|.+|..|.||||+|+..|+.++|++||++|+ +.+..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 200 -vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 200 -LDAKAADGNTALHYAALYNQPDCLKLLLKGRA----LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp -TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCC----CCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------
T ss_pred -CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCc
Confidence 88889999999999999999999999999998 556677889999999999999999999999999988843
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=5.7e-21 Score=196.87 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=115.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH---cCCHHHHHHHHHcCCccccCCC
Q 012618 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR---QGWSECVHTLLDNGALACSSTG 192 (460)
Q Consensus 116 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~---~g~~~~v~~Ll~~ga~~~~~~~ 192 (460)
..+.||.|+..|+.++++.|++.|++...... ....|..|.||||+|+. .|+.++|++||++|+ +++
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga----~vn 201 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG----HLD 201 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC----CTT
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCC------CcccccccchHHHHHHHhcccccHHHHHHHHHcCC----CCC
Confidence 44789999999999999999999987553311 23457889999999966 899999999999999 566
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccc
Q 012618 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQL 264 (460)
Q Consensus 193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~ 264 (460)
..|..|+||||+|+..|+.++|++||++|+|++.+|..|+||||+|+..++.+++++|+++|+++...+...
T Consensus 202 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h~ 273 (497)
T 3lvq_E 202 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273 (497)
T ss_dssp CCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCccee
Confidence 778899999999999999999999999999999999999999999999999999999999999988766544
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=3.5e-21 Score=190.01 Aligned_cols=128 Identities=27% Similarity=0.254 Sum_probs=113.7
Q ss_pred CCCCCChHHHHHHHc-CCHHHHHHHHHhcCCCCCcccCCCccccccCC--CCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 012618 112 DSLQGRTCLHYAAYY-GHSDCLQALLTAARTSPVANTWGFSRFVNIRD--ESGATPLHLAARQGWSECVHTLLDNGALAC 188 (460)
Q Consensus 112 ~~~~g~t~L~~A~~~-g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 188 (460)
....+.|+||.|+.. ++.+++++|++.+++ ++..+ ..|.||||+|+..|+.++|++|+++|+
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad------------vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga--- 259 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGAD------------VNWVNGGQDNATPLIQATAANSLLACEFLLQNGA--- 259 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC------------TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC------------CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC---
Confidence 344677999999999 999999999999988 77777 889999999999999999999999999
Q ss_pred cCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618 189 SSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255 (460)
Q Consensus 189 ~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga 255 (460)
+++..|..|+||||+|+..|+.++|++|+++|++++..|..|.||||+|+..++.+++++|+..+.
T Consensus 260 -dvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 260 -NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp -CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred -CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 556678889999999999999999999999999999999999999999999999999999976653
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=6.2e-21 Score=150.08 Aligned_cols=93 Identities=44% Similarity=0.614 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 012618 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239 (460)
Q Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~ 239 (460)
+|+||||+|+..|+.+++++|+++|+ +.+.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 48999999999999999999999999 56677889999999999999999999999999999999999999999999
Q ss_pred HhChHHHHHhhCCCCCC
Q 012618 240 KYKHQACAALLNPSSAE 256 (460)
Q Consensus 240 ~~~~~~i~~~Ll~~ga~ 256 (460)
..++.+++++|+++||+
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999999974
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=2.7e-20 Score=146.37 Aligned_cols=93 Identities=49% Similarity=0.715 Sum_probs=86.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN 194 (460)
Q Consensus 115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~ 194 (460)
+|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+ +.+.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~ 64 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAK 64 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcc
Confidence 489999999999999999999999988 89999999999999999999999999999999 56677
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618 195 GYPGSTPLHFAARGGSLECIRELLAWGAD 223 (460)
Q Consensus 195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 223 (460)
|..|.||||+|+..|+.+++++|+++|++
T Consensus 65 d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 65 DKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 88999999999999999999999999985
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=1.1e-20 Score=154.56 Aligned_cols=109 Identities=38% Similarity=0.486 Sum_probs=90.3
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccC
Q 012618 111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS 190 (460)
Q Consensus 111 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~ 190 (460)
.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+++|+ +
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~ 67 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA----D 67 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC------------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC----C
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC----C
Confidence 4567888888888888888888888888877 78888888888888888888888888888888 4
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 012618 191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235 (460)
Q Consensus 191 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL 235 (460)
.+..|..|.||||+|+..++.+++++|+++|++++..+..|.+|-
T Consensus 68 ~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 556677888888888888888888888888888888888888774
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.2e-19 Score=148.32 Aligned_cols=94 Identities=32% Similarity=0.365 Sum_probs=51.4
Q ss_pred CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618 44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123 (460)
Q Consensus 44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A 123 (460)
.+|.||||+|+..|+.+++++|++. +++++..|..|.||||+|+..++.+++++|++.|+++ +..+..|+||||+|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSK---GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA 82 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTT---TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 3455555555555555555555555 5555555555555555555555555555555555554 44444555555555
Q ss_pred HHcCCHHHHHHHHHhcCC
Q 012618 124 AYYGHSDCLQALLTAART 141 (460)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~ 141 (460)
+..|+.+++++|++.|++
T Consensus 83 ~~~~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGAD 100 (115)
T ss_dssp HTTTCHHHHHHHHTTSSS
T ss_pred HHCCCHHHHHHHHHcCCC
Confidence 555555555555555554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=6.8e-18 Score=137.04 Aligned_cols=94 Identities=35% Similarity=0.486 Sum_probs=84.6
Q ss_pred ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618 153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232 (460)
Q Consensus 153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~ 232 (460)
.....|.+|.|+||+|+..|+.+++++|+++|+ +.+.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 91 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGA----DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Confidence 367788999999999999999999999999999 5566788999999999999999999999999999999999999
Q ss_pred CHHHHHHHhChHHHHHhh
Q 012618 233 IPYAIALKYKHQACAALL 250 (460)
Q Consensus 233 tpL~~A~~~~~~~i~~~L 250 (460)
||||+|+..++.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 999999999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=3.8e-17 Score=132.58 Aligned_cols=89 Identities=30% Similarity=0.366 Sum_probs=73.7
Q ss_pred CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618 43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY 122 (460)
Q Consensus 43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 122 (460)
+.+|.|+||+|+..|+.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|+||||+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMAN---GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDI 96 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHH
Confidence 35677888888888888888888888 8888888888888888888888888888888888877 6677788888888
Q ss_pred HHHcCCHHHHHHH
Q 012618 123 AAYYGHSDCLQAL 135 (460)
Q Consensus 123 A~~~g~~~iv~~L 135 (460)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 8888888888776
No 115
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=94.96 Aligned_cols=54 Identities=22% Similarity=0.573 Sum_probs=46.9
Q ss_pred CCCCCccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeec
Q 012618 317 EASDVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARII 385 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~ 385 (460)
...+...|.||++...+++++||||. +|..|+..+ ..||+||.+|..++.+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---------------QQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC---------------SSCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC---------------CCCCCCCcchhceEEeecC
Confidence 34456789999999999999999999 899999765 7899999999998887753
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.21 E-value=8e-12 Score=90.08 Aligned_cols=54 Identities=30% Similarity=0.527 Sum_probs=46.2
Q ss_pred CCccCcccccCCCccEec--CCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCTIEIK--PCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~--~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
+...|.||++...+++++ ||||. +|..|+..|-..+ ..||+||++|..++.+.+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-----------KPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-----------CCCTTTCCCCCEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-----------CcCCCcCcchhceEeeec
Confidence 445799999999999987 99999 6999999984322 579999999999988875
No 117
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.20 E-value=1.1e-11 Score=89.14 Aligned_cols=54 Identities=26% Similarity=0.515 Sum_probs=45.4
Q ss_pred CCccCcccccCCCccEec--CCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCTIEIK--PCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~--~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
....|.||++...+.+++ ||||. +|..|+..+...+ ..||+||++|..++++.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceEEEec
Confidence 346799999999998777 99998 7999999983222 589999999999988864
No 118
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.08 E-value=4.5e-11 Score=89.93 Aligned_cols=50 Identities=30% Similarity=0.797 Sum_probs=44.9
Q ss_pred ccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecC
Q 012618 322 ELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN 386 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~ 386 (460)
..|.||++...+++++||||. +|..|+..+ ..||+||.+|...+.+.++.
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~~p~ 69 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHVQHVYLPT 69 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEEEECBCTT
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCeEEEEeCc
Confidence 469999999999999999999 899999666 68999999999998888654
No 119
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.3e-10 Score=84.08 Aligned_cols=54 Identities=24% Similarity=0.605 Sum_probs=43.8
Q ss_pred CCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 317 EASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...+...|.||++...+++.++|||.||..|+..|.. .......||+||.+|..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE--------TSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCS--------SSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHH--------cCCCCCCCCCCCCcCCc
Confidence 3445678999999999999999999999999999932 12234789999999854
No 120
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.03 E-value=8.3e-11 Score=87.46 Aligned_cols=49 Identities=33% Similarity=0.749 Sum_probs=43.9
Q ss_pred CccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 321 VELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
...|.||++...+++++||||. ||..|+..| ..||+||.+|...+.+.+
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEEECBC
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccCcEEEee
Confidence 3469999999999999999999 999999666 789999999999887764
No 121
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=87.18 Aligned_cols=49 Identities=33% Similarity=0.742 Sum_probs=43.2
Q ss_pred CccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 321 VELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
...|.||++...+++++||||. ||..|+..+ ..||+||.+|...+.+.+
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC---------------CCCccCCceecCcEEEec
Confidence 3469999999999999999999 999999665 789999999998877654
No 122
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.5e-10 Score=82.83 Aligned_cols=50 Identities=26% Similarity=0.558 Sum_probs=42.5
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
.+...|.||++...+.+.+||||.||..|+..|.... ..||+||..|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-----------KRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-----------SBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-----------CcCcCcCchhCHh
Confidence 3456799999999999999999999999999984332 7899999998653
No 123
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.93 E-value=8.5e-10 Score=80.57 Aligned_cols=53 Identities=28% Similarity=0.691 Sum_probs=43.7
Q ss_pred CCccCcccccCCCcc-EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 320 DVELCCICFENLCTI-EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~-~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
+...|.||++...+. +.+||||.||..|...|.... ..||+||.++..++...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEECCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhhhcc
Confidence 345799999999884 789999999999999995433 68999999998765543
No 124
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=82.59 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=42.5
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++...+++.++|||.||..|+..|.... ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-----------PRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-----------SBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-----------CcCCCcCccccc
Confidence 3456799999999999999999999999999995432 689999999974
No 125
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.1e-09 Score=79.46 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=42.4
Q ss_pred CCCccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 319 SDVELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
.+...|.||++...+.+.+ +|||.||..|+..|.... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCcc
Confidence 3456799999999998886 999999999999996443 7899999998654
No 126
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1e-09 Score=80.71 Aligned_cols=52 Identities=31% Similarity=0.776 Sum_probs=42.6
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~ 382 (460)
.+...|.||++...+ +.+||||.||..|+..|.. ....||+||.+|......
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-----------RHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-----------CCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-----------CcCcCCCcCCcccCCCcc
Confidence 345679999999999 8899999999999998832 247899999998765433
No 127
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.4e-09 Score=79.55 Aligned_cols=49 Identities=31% Similarity=0.693 Sum_probs=41.0
Q ss_pred CCCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++...+. +.++|||.||..|+..|.... ..||+||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-----------SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-----------CCCCCCCCccCc
Confidence 3456799999988776 889999999999999995543 689999999864
No 128
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.85 E-value=3e-09 Score=77.87 Aligned_cols=52 Identities=27% Similarity=0.567 Sum_probs=41.3
Q ss_pred CCCCccCcccccCC---CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618 318 ASDVELCCICFENL---CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV 380 (460)
Q Consensus 318 ~~~~~~C~iC~~~~---~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~ 380 (460)
......|.||++.. ..++.+||||.||..|+..|.... ..||+||..|...+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcC
Confidence 34456799998766 456779999999999999996544 56999999987644
No 129
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.84 E-value=2.2e-09 Score=74.75 Aligned_cols=47 Identities=28% Similarity=0.659 Sum_probs=39.6
Q ss_pred CCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 320 DVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
+...|.||++...+ ++.++|||.||..|+..|.... ..||+||.+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----------CcCCCCCCcCC
Confidence 34679999998865 7889999999999999995544 67999999875
No 130
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.82 E-value=3.9e-09 Score=79.28 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=40.3
Q ss_pred CCCccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeee
Q 012618 319 SDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVA 381 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~ 381 (460)
.+...|.||++.+.. +..++|||.||..|+..|.... ..||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-----------DSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-----------CSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-----------CcCcCcCCccCCccc
Confidence 345679999887654 4567999999999999995332 689999999876433
No 131
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.82 E-value=2.2e-09 Score=90.24 Aligned_cols=47 Identities=30% Similarity=0.615 Sum_probs=41.0
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
..|.||++.+.+++.+||||.||..|+..|.... ..||+||.+|...
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-----------IECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-----------SBCTTTCCBCCCE
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcC-----------CcCCCCCCcCCCC
Confidence 3599999999999999999999999999994333 6799999999654
No 132
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.6e-09 Score=77.47 Aligned_cols=50 Identities=34% Similarity=0.739 Sum_probs=41.8
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++...+++.++|||.||..|+..|.. .....||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS----------SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT----------TSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH----------hCcCCCCCCCcCCCh
Confidence 34567999999999999999999999999999943 223679999999864
No 133
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.8e-09 Score=79.16 Aligned_cols=54 Identities=26% Similarity=0.671 Sum_probs=42.0
Q ss_pred CCCccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618 319 SDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~ 383 (460)
.....|.||++.... +..+||||.||..|+..|.... ..||+||.+|..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSCCSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----------CcCCCcCcccccccccC
Confidence 345679999998754 4445999999999999996544 57999999987765443
No 134
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.81 E-value=6.8e-09 Score=79.26 Aligned_cols=55 Identities=24% Similarity=0.484 Sum_probs=44.5
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++...+.+.++|||.||..|+..|..... .......||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR-----NTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB-----CTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc-----CCCCCCCCCCCCCcCCH
Confidence 34567999999999999999999999999999965532 12234789999999864
No 135
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.8e-09 Score=81.31 Aligned_cols=52 Identities=29% Similarity=0.641 Sum_probs=42.6
Q ss_pred CCCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++.+.+ ++.++|||.||..|+..|.... .....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS--------INGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC--------SSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC--------CCCcCCCCCCCcccc
Confidence 345679999999998 8899999999999999996543 234789999998653
No 136
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=5.5e-09 Score=79.79 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=44.2
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
..+...|.||++...+++.+||||.||..|...|..... .......||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM-----LDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH-----HTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh-----cCCCCCcCCCCCCccCH
Confidence 344567999999999999999999999999999865421 01224789999999864
No 137
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=6.5e-09 Score=74.55 Aligned_cols=48 Identities=25% Similarity=0.628 Sum_probs=39.1
Q ss_pred CCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 317 EASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
...+...|.||++...+++.++|||.||..|+..|.... .....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS--------CGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHC--------SSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcC--------CCCCcCcCC
Confidence 344566899999999999999999999999999995431 233689998
No 138
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.79 E-value=6.3e-09 Score=77.26 Aligned_cols=49 Identities=27% Similarity=0.648 Sum_probs=41.1
Q ss_pred CCCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 319 SDVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
.+...|.||++.+.+++.++ |||.||..|+..|.... ....||+||.++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~~~CP~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---------DEHTCPTCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS---------SSSCCSSSCCSS
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc---------CCCcCCCCCCcC
Confidence 34567999999999999999 99999999999995433 136799999964
No 139
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=6.3e-09 Score=77.72 Aligned_cols=52 Identities=35% Similarity=0.644 Sum_probs=39.8
Q ss_pred CCccCcccccCC--CccEecC--CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeee
Q 012618 320 DVELCCICFENL--CTIEIKP--CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVA 381 (460)
Q Consensus 320 ~~~~C~iC~~~~--~~~~~~~--CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~ 381 (460)
+...|.||++.. .++.+.| |||.||..|+..+... ....||+||.++.....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----------~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----------ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----------SCSBCTTTCCBCSSCSS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----------CCCCCCCCCCccCCCch
Confidence 456799999977 3456666 9999999999888321 23689999999976543
No 140
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.77 E-value=2.5e-09 Score=78.78 Aligned_cols=48 Identities=29% Similarity=0.692 Sum_probs=40.6
Q ss_pred CCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 320 DVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
+...|.||++...+. +.++|||.||..|+..|.... ..||+||.++..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----------CCCCCCCCccCh
Confidence 446799999988776 889999999999999996543 689999999864
No 141
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.76 E-value=5.2e-09 Score=72.81 Aligned_cols=47 Identities=30% Similarity=0.719 Sum_probs=38.1
Q ss_pred CCccCcccccCCCc---cEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 320 DVELCCICFENLCT---IEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~~---~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
+...|.||++.... +..+| |||.||..|...|-.. ...||+||.+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-----------HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-----------CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-----------CCcCcCCCCEeE
Confidence 34579999998877 67777 9999999999999322 267999999864
No 142
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=76.52 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=40.3
Q ss_pred CccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 321 VELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 321 ~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
...|.||++...+. +.++|||.||..|+..|...+ ..||+||.++..-
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-----------CCCCCCCccCCcc
Confidence 45699999988765 788999999999999996543 6899999998753
No 143
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.74 E-value=3.5e-09 Score=79.74 Aligned_cols=56 Identities=27% Similarity=0.518 Sum_probs=43.0
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++.+.+++.+||||.||..|+..|..... ........||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~----~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV----TSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS----SSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc----cCCCCCCcCCCCCCcCCH
Confidence 34567999999999999999999999999987743321 011235789999999864
No 144
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=2.2e-09 Score=75.00 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=38.1
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.+...|.||++.+.+++.+||||.||..|... ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEee
Confidence 34567999999999999999999999999833 2368999999875
No 145
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=5.4e-09 Score=77.85 Aligned_cols=49 Identities=27% Similarity=0.688 Sum_probs=39.8
Q ss_pred CCCccCcccccCCCcc---EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCTI---EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~---~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++..... ..+||||.||..|+..|...+ ..||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----------RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----------SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----------CcCcCcCCcCCC
Confidence 3456799999876654 778999999999999996544 679999998753
No 146
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.72 E-value=7.4e-09 Score=80.22 Aligned_cols=49 Identities=24% Similarity=0.578 Sum_probs=40.0
Q ss_pred CCCccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++.+.. +..+||||.||..|+..|...+ ..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-----------GTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-----------CBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-----------CcCcCcCccCCC
Confidence 345679999988776 7778999999999999995433 689999998754
No 147
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.68 E-value=1.1e-08 Score=99.08 Aligned_cols=55 Identities=40% Similarity=0.848 Sum_probs=47.1
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeec
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARII 385 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~ 385 (460)
...|.||++...+++.+||||.||..|...|... ....||+||.+|.....+.+.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~----------~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES----------EGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH----------TCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc----------CCCCCCCCCCccCCceeEecC
Confidence 4689999999999999999999999999999542 227899999999988777653
No 148
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2.9e-08 Score=69.73 Aligned_cols=46 Identities=28% Similarity=0.646 Sum_probs=37.9
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
.+...|.||++...+.+.++|||.||..|+..|... ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWED--------LERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTS--------SCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHh--------cCCCCCCCCC
Confidence 345679999999999999999999999999999432 1234789998
No 149
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.66 E-value=1.8e-08 Score=75.54 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=42.0
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
+...|.||++...+++.++|||.||..|...|... +...||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~----------~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA----------GHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT----------TCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH----------CcCCCCCCcCCCCh
Confidence 45679999999999999999999999999999532 23789999999864
No 150
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.66 E-value=1.9e-08 Score=78.08 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=41.7
Q ss_pred CCCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 319 SDVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
.+...|.||++.+.+++.+| |||.||..|+..|.... ....||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---------DEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC---------TTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc---------CCCcCcCCCCcCC
Confidence 34567999999999999999 99999999999985432 1268999999973
No 151
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.64 E-value=7e-09 Score=100.00 Aligned_cols=50 Identities=30% Similarity=0.815 Sum_probs=44.3
Q ss_pred CCccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
+...|.||++.+.+++++||||. ||..|+..+ ..||+||.+|...+.+.+
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEECC-
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccCeEEeec
Confidence 44689999999999999999999 899999766 789999999999988764
No 152
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.62 E-value=1.9e-08 Score=79.34 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=40.9
Q ss_pred ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
..|.||++.+.+++. ++|||.||..|+..|..... ..||+||.++..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCCH
Confidence 469999999999999 99999999999999965541 579999999854
No 153
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=9.2e-09 Score=74.25 Aligned_cols=48 Identities=23% Similarity=0.550 Sum_probs=37.2
Q ss_pred CccCccccc-CCCcc----EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFE-NLCTI----EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~-~~~~~----~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.||++ ...+. +.++|||.||..|+..|.... ...||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG----------AGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT----------SSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC----------CCcCCCCCCcccc
Confidence 456999999 44443 568999999999999994322 3679999999864
No 154
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.62 E-value=2.2e-08 Score=82.43 Aligned_cols=48 Identities=25% Similarity=0.525 Sum_probs=41.1
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.||++...+++.+||||.||..|+..|... ....||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA----------QVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT----------TCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH----------CcCCCCCCCccCCC
Confidence 3569999999999999999999999999999542 22589999999865
No 155
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=1.8e-08 Score=81.39 Aligned_cols=49 Identities=31% Similarity=0.669 Sum_probs=41.2
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
..|.||++...+++.+||||.||..|+..|.... .....||+||.++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK--------KGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS--------SSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhC--------CCCCCCcCCCCcCCH
Confidence 3599999999999999999999999999995543 223689999998864
No 156
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.60 E-value=2.7e-08 Score=78.39 Aligned_cols=47 Identities=30% Similarity=0.714 Sum_probs=40.5
Q ss_pred CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.||++...+++.+ +|||.||..|...|.... ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-----------TQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-----------CCCCCCCCcCCh
Confidence 35699999999999887 999999999999995432 689999999875
No 157
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.56 E-value=3.6e-08 Score=79.01 Aligned_cols=47 Identities=19% Similarity=0.554 Sum_probs=40.9
Q ss_pred CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.||++...+++.+ +|||.||..|...|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCccccc
Confidence 45699999999999997 999999999999995432 789999999875
No 158
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.56 E-value=3.9e-08 Score=83.52 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=41.8
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
...|.||++.+.+++.+||||.||..|+..|.... ...||+||.++..-
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ----------VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT----------CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC----------CCcCCCCCccCCCC
Confidence 35699999999999999999999999999995432 25799999998754
No 159
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.54 E-value=2.1e-08 Score=81.41 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=40.5
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.||++...+++.++|||.||..|+..|.. .....||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVE----------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCC----------TTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHh----------HCcCCCCCCCcccCc
Confidence 457999999999999999999999999977732 123789999999875
No 160
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.49 E-value=2.1e-07 Score=72.74 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCCCccCcccccCCCccEecCCC-CccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 318 ASDVELCCICFENLCTIEIKPCG-HQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~Cg-H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
..+...|.||++-..+++.++|| |.||..|+..|... ...||+||.++..-
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-----------~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-----------CCCCCCCCCCCChh
Confidence 34567899999999999999999 99999999999432 26899999998643
No 161
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.49 E-value=1.5e-07 Score=71.68 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=43.0
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
.+...|.||++-..+++.++|||.||..|+..|.... ..||+||.++..-
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-----------PTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCGG
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-----------CCCCCCcCCCChH
Confidence 4567899999999999999999999999999996532 6799999988643
No 162
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.47 E-value=1.2e-07 Score=77.23 Aligned_cols=52 Identities=23% Similarity=0.478 Sum_probs=43.4
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
..+...|.||++...+++.++|||.||..|+..|..... ..||+||.++...
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----------HKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC----------CCCCCCCCCcCHH
Confidence 344567999999999999999999999999999955441 3799999998764
No 163
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=71.78 Aligned_cols=48 Identities=19% Similarity=0.543 Sum_probs=36.2
Q ss_pred CCccCcccccCCCc--------------cEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 320 DVELCCICFENLCT--------------IEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 320 ~~~~C~iC~~~~~~--------------~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
+...|.||++.... ++.+ +|||.|+..|+..|...+ ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----------NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----------CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----------CCCCCcCCCcch
Confidence 34568888887754 4444 599999999999994333 589999998753
No 164
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.45 E-value=1.9e-07 Score=73.38 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=42.3
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++-..+++.+||||.||..|+..|... ...||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-----------SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-----------CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-----------CCCCCCCCCCCCh
Confidence 456689999999999999999999999999999432 2789999999864
No 165
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.45 E-value=9.3e-08 Score=82.82 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=40.8
Q ss_pred CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.||++.+.+++.+ +|||.||..|+..|.... ...||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG----------NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT----------CCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC----------cCCCCCCCCcCCC
Confidence 45799999999998886 999999999999995532 2679999999854
No 166
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.44 E-value=9e-08 Score=77.44 Aligned_cols=51 Identities=29% Similarity=0.695 Sum_probs=38.1
Q ss_pred ccCcccccCCCcc------------------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 322 ELCCICFENLCTI------------------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 322 ~~C~iC~~~~~~~------------------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
..|.||++.+... ..++|||.||..|+..|..... ......||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~------~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN------KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC------CSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc------CCCCCcCCCCCCccCC
Confidence 4799999987543 3789999999999999953221 1223689999998754
No 167
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.40 E-value=1.6e-07 Score=76.26 Aligned_cols=48 Identities=27% Similarity=0.442 Sum_probs=41.4
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.||++...+++.++|||.||..|+..|.... ...||+||.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVM----------GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC----------cCcCCCCCCCCCH
Confidence 45699999999999999999999999999995442 2679999999865
No 168
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.38 E-value=1.7e-07 Score=77.84 Aligned_cols=54 Identities=28% Similarity=0.591 Sum_probs=43.7
Q ss_pred CCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
+...|.||++...+. +.++|||.||..|+..|.... ..||+||..+...-..++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-----------SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-----------CCCCCCCCcCcccccccc
Confidence 345799999998877 889999999999999995433 589999999975554443
No 169
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.37 E-value=1.1e-07 Score=79.82 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=41.2
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
..+...|.||++...+++.++|||.||..|+..|.... ...||+||.+|
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~----------~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG----------PQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS----------CEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC----------CCCCCCCCCcc
Confidence 34556799999999999999999999999999995322 25799999987
No 170
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=1.6e-07 Score=76.37 Aligned_cols=44 Identities=23% Similarity=0.497 Sum_probs=38.2
Q ss_pred CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
...|.||++.+.+++.+ +|||.||..|+..|.. ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCc
Confidence 35699999999999998 9999999999988721 67999999974
No 171
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.23 E-value=9.8e-07 Score=69.87 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=36.8
Q ss_pred CCccCcccccCCCc------------------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 320 DVELCCICFENLCT------------------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~~~------------------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
+.+.|.||++.+.. ++.++|||.|+..|+..|...+ ..||+||.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-----------SBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-----------CcCcCCCCcc
Confidence 45679999987654 3558999999999999995433 7899999985
No 172
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.14 E-value=9.2e-07 Score=73.37 Aligned_cols=50 Identities=30% Similarity=0.666 Sum_probs=41.3
Q ss_pred CCCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 319 SDVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
.+...|.||++..... +..+|||.||..|...|.... ..||+||.+|..-
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-----------CCCCCCCCcCChh
Confidence 3456799999987765 788999999999999996544 6899999998654
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.14 E-value=1.8e-06 Score=81.41 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=41.9
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
+...|.||++-..+++.+||||.||..|+..|.... ...||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~----------~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT----------CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC----------CCCCcCCCCCCch
Confidence 456799999999999999999999999999996543 1349999999864
No 174
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.05 E-value=2.4e-06 Score=74.24 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=43.1
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
..+...|.||++...+++..+|||.||..|+..|.... ...||+||.++..-
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA----------GHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH----------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC----------CCCCCCCccCcchh
Confidence 34456799999999999999999999999999985433 14899999998763
No 175
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.98 E-value=5.1e-06 Score=71.91 Aligned_cols=50 Identities=18% Similarity=0.022 Sum_probs=42.1
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
+...|.||++-..+++.+||||.||..|+..|...+ ...||+||.++..-
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~----------~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC----------CCCCCCCcCCCChh
Confidence 456799999999999999999999999999995442 13699999988653
No 176
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.5e-05 Score=72.42 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=41.3
Q ss_pred CCCCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcc--cccccc
Q 012618 318 ASDVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPF--CRCSIA 377 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~i~ 377 (460)
......|.||++.+.+++. ..|||.||..|+..+.... ....||+ ||..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~---------~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY---------TTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC---------SCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC---------CCCCCCcccccCcCc
Confidence 3445679999999999998 4999999999999994321 2368999 999774
No 177
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=6.1e-06 Score=63.96 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=41.1
Q ss_pred CCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcc--cccc-cc
Q 012618 320 DVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPF--CRCS-IA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~-i~ 377 (460)
+...|.||++.+.+++..+ |||.||..|+..|...+. .......||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~-----~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ-----KRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH-----TTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc-----CcCCCCCCCcCcCcccccC
Confidence 3457999999999999996 999999999999965431 0112468999 9866 43
No 178
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.92 E-value=1.6e-06 Score=69.64 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=0.8
Q ss_pred CCccCcccccCCCc------------------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 320 DVELCCICFENLCT------------------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~~~------------------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
+.+.|.||++.... ++..+|+|.|+..|+..|...+ ..||+||.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREW 110 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-----------CcCCCCCCee
Confidence 34679999988754 2335899999999999994332 6899999984
No 179
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1.5e-05 Score=59.45 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=39.0
Q ss_pred CCCccCcccccCC--CccEecCCC-----CccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 319 SDVELCCICFENL--CTIEIKPCG-----HQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 319 ~~~~~C~iC~~~~--~~~~~~~Cg-----H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
.+...|.||++.. .+...+||+ |.|...|+..|...+. ...||+||..+.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeeec
Confidence 3456799999765 345678996 9999999999965541 2589999998743
No 180
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.77 E-value=6.5e-06 Score=63.85 Aligned_cols=52 Identities=15% Similarity=0.372 Sum_probs=37.6
Q ss_pred CccCcccccCCCccEe---cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcc--cccc
Q 012618 321 VELCCICFENLCTIEI---KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPF--CRCS 375 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~---~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~ 375 (460)
...|.||++.....++ .+|||.||..|+..+...... +.......||. ||..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~---~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK---EGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH---HCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh---cCCcccccCccccCCCC
Confidence 4569999998776544 389999999999888554311 11123478999 9988
No 181
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.64 E-value=2.5e-05 Score=59.35 Aligned_cols=52 Identities=19% Similarity=0.427 Sum_probs=39.7
Q ss_pred cCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 323 LCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 323 ~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
.|.+|--.... ....||+|.||..|+..+.... ...||.||.+|.++-....
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~----------~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG----------DKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT----------CCBCTTTCCBCSEEEEEEG
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc----------CCCCcCcCCeeeeeEEecc
Confidence 57778666555 4457999999999998873222 2679999999999888654
No 182
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.42 E-value=9.1e-05 Score=52.07 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=43.6
Q ss_pred ccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 322 ELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
..|.||++...+++.. +|||.+|..|+..|-..+ ..||+++.+++..-.+++
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence 4699999999999998 999999999999996544 459999999866555544
No 183
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.22 E-value=0.00016 Score=67.89 Aligned_cols=62 Identities=18% Similarity=0.331 Sum_probs=40.4
Q ss_pred CCCCccCcccccCCCc------cEe--cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 318 ASDVELCCICFENLCT------IEI--KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~------~~~--~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
+.....|.||++.... ..+ ..|||.|-..|...|-................||+||++|+.-
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3456779999976554 233 3799999999999995443111111112235799999998643
No 184
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.81 E-value=0.0027 Score=46.23 Aligned_cols=51 Identities=25% Similarity=0.554 Sum_probs=37.4
Q ss_pred CCCCccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 318 ASDVELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
......|.||.+.... ..+..|+|.|=..|+.+|-.. .....||+||++..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~---------~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS---------NAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTT---------CSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHh---------cCCCCCCCCcCcCC
Confidence 3455779999987653 445589999999999999321 12278999998754
No 185
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.74 E-value=0.001 Score=46.43 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=37.3
Q ss_pred CCCCccCcccccCCCccEecCCCC-----ccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 318 ASDVELCCICFENLCTIEIKPCGH-----QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH-----~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
+++...|.||++........||.+ .+=..|+.+|...+. ...||+||.+.
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~ 57 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVY 57 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCee
Confidence 345678999998766555689654 678899999975531 27899999875
No 186
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.23 E-value=0.091 Score=37.73 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=36.3
Q ss_pred CCCccCcccccCCCccEecCC----CCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 319 SDVELCCICFENLCTIEIKPC----GHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~C----gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
.....|.+|.++..+..|.-| +|.||..|....-....+...---+...+||+=
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~ 70 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLV 70 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccC
Confidence 345679999999999988878 789999999776444322211122444556653
No 187
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.44 E-value=0.17 Score=37.20 Aligned_cols=52 Identities=23% Similarity=0.538 Sum_probs=38.8
Q ss_pred CCCCccCcccccCC-------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618 318 ASDVELCCICFENL-------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL 379 (460)
Q Consensus 318 ~~~~~~C~iC~~~~-------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~ 379 (460)
....+.|.||-|.. ..+++..|+=.+|..|+.+- .......||-|+.+-++.
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----------rkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----------RREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----------HHTSCSSCTTTCCCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----------HhccCccccccCCccccc
Confidence 34567899999874 33555678888899999888 333447899999987654
No 188
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.05 E-value=0.098 Score=38.98 Aligned_cols=51 Identities=18% Similarity=0.466 Sum_probs=39.5
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
..|+.|+......+-= .-|..|..|...+-..+ ..||+|..++-..+++..
T Consensus 29 ~nCKsCWf~~k~LV~C-~dHYLCl~CLtlmL~~S-----------drCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 29 QFCKSCWFENKGLVEC-NNHYLCLNCLTLLLSVS-----------NRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CCCCSSCSCCSSEEEC-SSCEEEHHHHHHTCSSS-----------SEETTTTEECCCCSCTTT
T ss_pred ccChhhccccCCeeee-cchhhHHHHHHHHHhhc-----------cCCcccCCcCCcceecCc
Confidence 5799999988866554 68999999997774333 789999999866555544
No 189
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=85.92 E-value=0.41 Score=36.74 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.7
Q ss_pred CccCcccccC-CCc--cEecCCCCccchhhHHHH
Q 012618 321 VELCCICFEN-LCT--IEIKPCGHQMCAHCTLAL 351 (460)
Q Consensus 321 ~~~C~iC~~~-~~~--~~~~~CgH~~C~~C~~~~ 351 (460)
...|.||.+. ... ...++|+|.||..|...+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 3569999964 333 334999999999999874
No 190
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=83.73 E-value=0.89 Score=31.43 Aligned_cols=32 Identities=38% Similarity=0.844 Sum_probs=26.7
Q ss_pred CCCccCcccccCCCccEecCC-CCccchhhHHHH
Q 012618 319 SDVELCCICFENLCTIEIKPC-GHQMCAHCTLAL 351 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~C-gH~~C~~C~~~~ 351 (460)
.+..-|.||.+. ..+.++.| |-++|.+|+...
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHH
Confidence 445679999998 77899999 778899999776
No 191
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.69 E-value=1.5 Score=39.47 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=35.7
Q ss_pred CccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.+|.+-... ..+..|+|.+-..|...|..+ .....||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~---------~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS---------NAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT---------CSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh---------CCCCCCCCCCCCCCC
Confidence 5679999985543 445559999999999998322 223689999997543
No 192
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.58 E-value=6.7 Score=27.32 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=32.6
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
...|.||.+....+..--|...|-..|.. +.........+.||.|+..
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~-------P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAFHWRCHF-------PAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEECHHHHC-------TTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCceecccCC-------CccCcCCCCCEECccccCC
Confidence 45699999876656666787777777762 1122334456899999764
No 193
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=72.31 E-value=5.1 Score=32.68 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=38.7
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
.....|.+|.+...-+..-.|-..||..|....-..............+.||+|+..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345679999999888888889999999999755211000000024456899999854
No 194
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.92 E-value=1.8 Score=34.73 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
......|.+|.+...-+-.-.|-..||..|....-..............+.|++|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3345669999998776667789999999999764110000001113456999999865
No 195
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=67.08 E-value=0.71 Score=38.44 Aligned_cols=47 Identities=17% Similarity=0.395 Sum_probs=34.7
Q ss_pred CCccCcccccCC-----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 320 DVELCCICFENL-----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~-----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
....|.+|...+ ....+..|.|.+|..|.... .....+.|-+|+..-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~----------~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH----------PEEQGWLCDPCHLAR 118 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC----------SSSSSCEEHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccccc----------CCCCcEeeHHHHHHH
Confidence 346799999874 44677889999999998322 234558999999873
No 196
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=66.69 E-value=6.7 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=23.8
Q ss_pred CCCCccCcccccCCCc----cEecCCCCccchhhH
Q 012618 318 ASDVELCCICFENLCT----IEIKPCGHQMCAHCT 348 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~ 348 (460)
..+...|.+|...+.. .-...||+.||..|.
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 52 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCS 52 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGG
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHh
Confidence 3456679999988754 344689999999997
No 197
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=64.58 E-value=16 Score=24.85 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=30.5
Q ss_pred CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
.....|.+|.+....+..-.|-..|-..|... ...........||.|+..
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p-------~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRAYHMVCLDP-------DMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCEEEHHHHCT-------TCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChhhhhhccCC-------CCCCCCCCceECcccccc
Confidence 34567999998654444455666666666521 112234456899999864
No 198
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.25 E-value=12 Score=27.75 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=29.9
Q ss_pred CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
......|.+|.+...-+.+..|-..|-..|. .|.....+...+.||.|+..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl-------~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCH-------LPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSS-------STTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccC-------CCCCCCCcCCCcCCccccCC
Confidence 3455679999987644444555444444443 11222334566899999753
No 199
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=62.47 E-value=7.8 Score=26.45 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=27.3
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
....|.||.+...-+..-.|...|-..|.. +...........||.|+..
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~-------ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCDTCPSSYHIHCLN-------PPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCSSCBCCSSSCCCBCSSSSS-------SCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCCCEEEcCCCCHHHcccccC-------CCcCcCCCCccCChhhcCc
Confidence 456799998754333334454444444431 1112233456899999865
No 200
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.71 E-value=2.1 Score=33.99 Aligned_cols=45 Identities=16% Similarity=0.368 Sum_probs=29.8
Q ss_pred CccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 321 VELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 321 ~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
...|..|...+.. ..+..||..||..|... ..+..+.|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~-----------~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ-----------VGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------------CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCC-----------CCCCceECHHHHHHH
Confidence 3569999887754 34568999999999722 222357788887653
No 201
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=59.79 E-value=45 Score=28.15 Aligned_cols=133 Identities=12% Similarity=0.125 Sum_probs=88.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA 89 (460)
Q Consensus 10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A 89 (460)
+-++-|-.|+.-|++++...+.+.-.+.... ...=..|...|++++++....+ -.++. ..+.+.
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~W------k~Lg~~AL~~gn~~lAe~cy~~---~~D~~-------~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKLNDSITW------ERLIQEALAQGNASLAEMIYQT---QHSFD-------KLSFLY 70 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHCCHHHH------HHHHHHHHHTTCHHHHHHHHHH---TTCHH-------HHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHhCCHHHH------HHHHHHHHHcCChHHHHHHHHH---hCCHH-------HHHHHH
Confidence 3456789999999999998887643221111 2455678889999999999998 33332 344555
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCH-HHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS-DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A 168 (460)
...|+.+-++.|.+.-. ...+-..+++.+...|+. +++++|.+.+.. .-+..+|
T Consensus 71 ~~tg~~e~L~kla~iA~-----~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~--------------------~eA~~~A 125 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQ-----TREDFGSMLLNTFYNNSTKERSSIFAEGGSL--------------------PLAYAVA 125 (177)
T ss_dssp HHHTCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH--------------------HHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH-----HCccHHHHHHHHHHcCCHHHHHHHHHHCCCh--------------------HHHHHHH
Confidence 56788877776654311 112345677888888887 566777665432 1256677
Q ss_pred HHcCCHHHHHHHHHc
Q 012618 169 ARQGWSECVHTLLDN 183 (460)
Q Consensus 169 ~~~g~~~~v~~Ll~~ 183 (460)
-.+|..++.+.+++.
T Consensus 126 ~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 126 KANGDEAAASAFLEQ 140 (177)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHH
Confidence 788888888888754
No 202
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=58.05 E-value=5.7 Score=34.74 Aligned_cols=51 Identities=18% Similarity=0.427 Sum_probs=30.2
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
....|.+|.+...-+.+-.|...+...|.. +.....+.+.+.||.|+..-.
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~-------p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHV-------PTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTSS-------SCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccCC-------CCCCCCCCCCEEeCceeCccc
Confidence 446699998775444445565555555541 111223345689999997643
No 203
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.29 E-value=5.1 Score=31.97 Aligned_cols=30 Identities=27% Similarity=0.788 Sum_probs=23.0
Q ss_pred CCccCcccccCCCcc----EecCCCCccchhhHH
Q 012618 320 DVELCCICFENLCTI----EIKPCGHQMCAHCTL 349 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~----~~~~CgH~~C~~C~~ 349 (460)
+...|.+|...+... .+..||+.||..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 345699999877543 556899999999973
No 204
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=56.52 E-value=8.7 Score=32.80 Aligned_cols=49 Identities=18% Similarity=0.428 Sum_probs=29.7
Q ss_pred CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
...|.+|.+...-+.+-.|...+...|.. +.......+.+.||.|+..-
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~-------p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHV-------PTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSS-------SCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccC-------CCCCCCCCCCEECccccCcc
Confidence 45699999776545555566555555531 11122334568999999754
No 205
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=55.43 E-value=6.5 Score=30.08 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.4
Q ss_pred CCCCCCcccccccc
Q 012618 364 PEVPACPFCRCSIA 377 (460)
Q Consensus 364 ~~~~~CP~Cr~~i~ 377 (460)
..+..||.|++.-.
T Consensus 82 ~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 82 NIPSRCPKCKSEWI 95 (105)
T ss_dssp SCCSSCSSSCCCCB
T ss_pred CCCCCCcCCCCCcc
Confidence 34478999998743
No 206
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=55.08 E-value=12 Score=27.62 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCCccCcccccCC-----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 318 ASDVELCCICFENL-----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 318 ~~~~~~C~iC~~~~-----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
..+...|.||.+.. .-+.+-.|.-.|-..|..- ...+...+.||.|+...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p---------~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV---------PYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC---------SSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC---------CccCCCceECccccCcc
Confidence 34557899999765 2233345555555555511 12344568999998764
No 207
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.84 E-value=6.1 Score=28.84 Aligned_cols=29 Identities=24% Similarity=0.763 Sum_probs=22.6
Q ss_pred CCccCcccccCCCcc----EecCCCCccchhhH
Q 012618 320 DVELCCICFENLCTI----EIKPCGHQMCAHCT 348 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~----~~~~CgH~~C~~C~ 348 (460)
+...|.+|...+... -...||..||..|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 50 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCS 50 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGG
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHh
Confidence 445799999877643 44689999999998
No 208
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=52.93 E-value=73 Score=26.87 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCH
Q 012618 16 FVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKL 95 (460)
Q Consensus 16 ~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 95 (460)
..|...|++++++.-..+-.++ + ..+.+....|+.+-++.+.+.- ....+-..+++.+...|++
T Consensus 42 ~~AL~~gn~~lAe~cy~~~~D~-------~--~L~~Ly~~tg~~e~L~kla~iA-------~~~g~~n~af~~~l~lGdv 105 (177)
T 3mkq_B 42 QEALAQGNASLAEMIYQTQHSF-------D--KLSFLYLVTGDVNKLSKMQNIA-------QTREDFGSMLLNTFYNNST 105 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCH-------H--HHHHHHHHHTCHHHHHHHHHHH-------HHTTCHHHHHHHHHHHTCH
T ss_pred HHHHHcCChHHHHHHHHHhCCH-------H--HHHHHHHHhCCHHHHHHHHHHH-------HHCccHHHHHHHHHHcCCH
Confidence 3577889999999999887666 1 4566666788888777775531 1112233677888778887
Q ss_pred -HHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhc
Q 012618 96 -SCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA 139 (460)
Q Consensus 96 -~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 139 (460)
+++++|++.|.-+ -+...|-.+|..++.+.|++..
T Consensus 106 ~~~i~lL~~~~r~~---------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 106 KERSSIFAEGGSLP---------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTTCHH---------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChH---------HHHHHHHHcCcHHHHHHHHHHh
Confidence 6888887765422 3456677899999999998764
No 209
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.76 E-value=19 Score=31.60 Aligned_cols=28 Identities=25% Similarity=0.700 Sum_probs=22.1
Q ss_pred CccCcccccCCCc----cEecCCCCccchhhH
Q 012618 321 VELCCICFENLCT----IEIKPCGHQMCAHCT 348 (460)
Q Consensus 321 ~~~C~iC~~~~~~----~~~~~CgH~~C~~C~ 348 (460)
...|.+|...+.. .-+..||+.||..|.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 4689999887653 455689999999997
No 210
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.77 E-value=4.3 Score=39.87 Aligned_cols=54 Identities=19% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 319 SDVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
.+...|.+|...+.. ..+..||+.+|..|..... +-+.......+.|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~----~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY----PLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee----eCCCCCCCcCEecHHHHHHH
Confidence 345679999886643 3456899999999985432 11111223347788887654
No 211
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.70 E-value=14 Score=27.04 Aligned_cols=30 Identities=20% Similarity=0.649 Sum_probs=22.7
Q ss_pred CCCccCcccccCCCc----cEecCCCCccchhhH
Q 012618 319 SDVELCCICFENLCT----IEIKPCGHQMCAHCT 348 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~ 348 (460)
.+...|.+|...+.. --...||.+||..|.
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 345679999988754 334689999999997
No 212
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.34 E-value=12 Score=27.77 Aligned_cols=30 Identities=20% Similarity=0.568 Sum_probs=22.9
Q ss_pred CCccCcccccCCCc----cEecCCCCccchhhHH
Q 012618 320 DVELCCICFENLCT----IEIKPCGHQMCAHCTL 349 (460)
Q Consensus 320 ~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~ 349 (460)
+...|.+|...+.. .....||+.||..|..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 45679999887643 4456899999999983
No 213
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=48.48 E-value=14 Score=26.13 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCCccCcccccCC-----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 317 EASDVELCCICFENL-----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~-----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
...+...|.||.+.. .-+..-.|.-.+-..|.. +.......+.||.|+..-
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~---------~~~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG---------VPYIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT---------CSSCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC---------CCcCCCCCcCCccCcCcC
Confidence 344567799998764 223334566555566651 112334568999998653
No 214
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.35 E-value=18 Score=32.03 Aligned_cols=30 Identities=27% Similarity=0.701 Sum_probs=22.8
Q ss_pred CCccCcccccCCCc----cEecCCCCccchhhHH
Q 012618 320 DVELCCICFENLCT----IEIKPCGHQMCAHCTL 349 (460)
Q Consensus 320 ~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~ 349 (460)
+...|.+|...+.. ..+..||+.||..|..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 34579999877653 4456899999999973
No 215
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=47.67 E-value=8.2 Score=37.02 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=44.1
Q ss_pred CCCCCccCcccccCCCccEec--CCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc-ceeee
Q 012618 317 EASDVELCCICFENLCTIEIK--PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI-ANLVA 381 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~~~~~~--~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i-~~~~~ 381 (460)
+......|.+|-+...-+.+- .|...||..|...+-........ .....+.|-+|...- .++++
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i-~~~d~W~Cf~C~p~p~~~ll~ 155 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKV-HAMSNWVCYLCLPSSRSGLLQ 155 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHH-HHCSSCCCTTTSSCCEETTEE
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHh-hccCCceEEEcCCcchHhhhh
Confidence 334456799999988777777 89999999999888433221111 224568999999775 44443
No 216
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=46.64 E-value=13 Score=25.81 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=28.0
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
....|.||.+...-+..-.|...|-..|.. +...........||.|+..
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~-------ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAFHLACLS-------PPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEECTTTSS-------SCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCCCEEEcCCCChhhcccccC-------CCcCcCCCCCeECccccCc
Confidence 456799999865444445555444444441 1112233456899999764
No 217
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.19 E-value=14 Score=24.59 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=26.6
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRC 374 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 374 (460)
....|.+|.+...-+....|...|-..|.. +...........||.|+.
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~-------ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLD-------PPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCSSCCEECSSSSCEECSSSSS-------SCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCCCeEEEcCCCCcceECccCC-------CCcCCCCCCceEChhhhC
Confidence 346699999865434444555444444441 111223345688999964
No 218
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=45.49 E-value=13 Score=25.20 Aligned_cols=50 Identities=18% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
....|.+|.+...-+..-.|...|-..|.. +...........||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~-------ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLD-------PPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSS-------SCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCC-------CCcCCCCCCceEChhccChh
Confidence 346799999865444445566555555541 11122334568999997654
No 219
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=43.15 E-value=47 Score=24.15 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=30.7
Q ss_pred CCCCccCcccccCC--CccEecCCCCccchhhHHHH--hhcCCCC---cccCCCCCCCCccc
Q 012618 318 ASDVELCCICFENL--CTIEIKPCGHQMCAHCTLAL--CCHKKPD---IITAVPEVPACPFC 372 (460)
Q Consensus 318 ~~~~~~C~iC~~~~--~~~~~~~CgH~~C~~C~~~~--~~~~~~~---~~~~~~~~~~CP~C 372 (460)
....+.|.||-.-. .-.-+.-|+..|-..|..+. +...... ........+.||.|
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C 73 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 73 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence 33567899997333 22333456777777888775 1111000 11123456899999
No 220
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=42.53 E-value=48 Score=31.91 Aligned_cols=63 Identities=24% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHH
Q 012618 17 VAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS 96 (460)
Q Consensus 17 ~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 96 (460)
..+..|+...|+..+..|.+....- |.-..+ ||+. ++. -.-|.|.+|+|++..+-+
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~l------t~~e~~-----------lln~------~~a-f~~g~tlvhlair~~r~~ 83 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQL------TADEVR-----------LLNR------PSA-FDVGYTLVHLAIRFQRQD 83 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCC------CHHHHH-----------HHCC------TTT-CCTTCCHHHHHHHTTCHH
T ss_pred HHHHcCChhHHHHHHhcCCchhccc------CHHHHH-----------HhCC------Ccc-cccCchhhhhhhhhhhhh
Confidence 4567899999999999998884432 333332 3333 112 234788888888888888
Q ss_pred HHHHHHH
Q 012618 97 CVKKLIE 103 (460)
Q Consensus 97 ~v~~Ll~ 103 (460)
++-.|+.
T Consensus 84 ~l~~ll~ 90 (454)
T 3zrh_A 84 MLAILLT 90 (454)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 8888886
No 221
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.18 E-value=16 Score=25.82 Aligned_cols=27 Identities=22% Similarity=0.698 Sum_probs=21.3
Q ss_pred ccCcccccCCCc----cEecCCCCccchhhH
Q 012618 322 ELCCICFENLCT----IEIKPCGHQMCAHCT 348 (460)
Q Consensus 322 ~~C~iC~~~~~~----~~~~~CgH~~C~~C~ 348 (460)
..|.+|...+.. --...||..||..|.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CcccCCCCccCCccccccCCCCCEEEccccc
Confidence 469999987754 344689999999997
No 222
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=42.12 E-value=16 Score=31.25 Aligned_cols=47 Identities=19% Similarity=0.465 Sum_probs=27.9
Q ss_pred ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
..|.+|.+....+.+..|-..+...|.. +.......+.+.||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~-------p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHL-------PALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTST-------TCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCC-------CCcccCCCCCCCCcCccCC
Confidence 4599999776544444555455444541 1112334566899999875
No 223
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.92 E-value=13 Score=27.50 Aligned_cols=54 Identities=17% Similarity=0.346 Sum_probs=32.6
Q ss_pred CccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 321 VELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 321 ~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
...|.+|...+.. --...||+.||..|...... -+.......+.|-.|-..+..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~----lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSAL----VPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEE----ETTTTSEEEEECHHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCcee----ccccCCCcCEECHHHHHHHHh
Confidence 4569999887654 34468999999999833210 011111233677777776554
No 224
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.20 E-value=8.1 Score=27.66 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=32.1
Q ss_pred CCccCcccccCCCc-----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 320 DVELCCICFENLCT-----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~~~-----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
....|..|...... .+...|.|.+|..|-... ....+.|-+|-...
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~-----------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE-----------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC-----------STTCEEEHHHHSSC
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccccC-----------CCCCEEEeeCchhh
Confidence 44579999987654 566789999999997222 22458888886654
No 225
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=41.02 E-value=12 Score=30.98 Aligned_cols=60 Identities=15% Similarity=0.285 Sum_probs=40.5
Q ss_pred CCCCCCccCcccccCCCccEec--CCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 316 SEASDVELCCICFENLCTIEIK--PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 316 ~~~~~~~~C~iC~~~~~~~~~~--~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
++......|.+|-+....+.+- .|-..||..|+..+-........ .....+.|-+|....
T Consensus 74 DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i-~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAA-IKEDPWNCYMCGHKG 135 (159)
T ss_dssp CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHH-HTSSSCCCTTTCSSC
T ss_pred CCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHH-hccCCCEEEecCCcc
Confidence 3444566799999887555555 68889999999888433221111 235668999998754
No 226
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.22 E-value=34 Score=25.42 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=11.0
Q ss_pred ccCCCCCCCCcccccc
Q 012618 360 ITAVPEVPACPFCRCS 375 (460)
Q Consensus 360 ~~~~~~~~~CP~Cr~~ 375 (460)
.........||.|+..
T Consensus 70 ~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 70 TTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SSCCCSSCCCTTTCCC
T ss_pred CcCCCCCEECcCccCc
Confidence 3344466899999865
No 227
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.66 E-value=23 Score=26.39 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=27.9
Q ss_pred CCCCCccCcccccCCC---ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 317 EASDVELCCICFENLC---TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 317 ~~~~~~~C~iC~~~~~---~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
...+...|.||..... .+.+-.|...+-..|.. +.....+.....||.|+...
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-------Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-------PPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS-------SCCSSCCSSCCCCHHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCC-------CCcccCCCCCcCCccCcCcc
Confidence 3345567999987653 22223444333333331 11122334568999998653
No 228
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=35.61 E-value=23 Score=21.51 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 012618 14 ALFVAVENGDLQMIEAMVE 32 (460)
Q Consensus 14 ~L~~Aa~~g~~~~vk~Ll~ 32 (460)
-+..|+..|+++.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4677888888888887743
No 229
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.62 E-value=15 Score=29.54 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=33.6
Q ss_pred CccCcccccCCC-----ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 321 VELCCICFENLC-----TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 321 ~~~C~iC~~~~~-----~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
...|.+|...+. ...+..|.|.+|..|.... ++ ......+.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~-----~~--~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET-----SN--NRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC-----CC--SSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCcc-----CC--CCCccceechhhHHH
Confidence 467999998873 3466789999999987332 00 123445899999986
No 230
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=33.78 E-value=19 Score=20.19 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=14.8
Q ss_pred cCccCCCCCCCCCcCcccccccccccccCCCc
Q 012618 402 RKSWNSSEGSSSSFKGLSAMGSFVKIAGRSSG 433 (460)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (460)
|.|||+.. . =.+|.+++..|.+--||||
T Consensus 3 rdsMN~pS---T-KVsWAaVtgggslvprgsg 30 (33)
T 1uvq_C 3 RDSMNLPS---T-KVSWAAVGGGGSLVPRGSG 30 (33)
T ss_pred ccccCCCc---c-ccceEEecCCceeeeccCC
Confidence 56677642 2 3345555555554456665
No 231
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=32.18 E-value=32 Score=23.24 Aligned_cols=39 Identities=23% Similarity=0.643 Sum_probs=27.3
Q ss_pred cCcccccCCCccE---ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618 323 LCCICFENLCTIE---IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372 (460)
Q Consensus 323 ~C~iC~~~~~~~~---~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C 372 (460)
.|--|.....+.. ..-|++.||..|=.-+ -.....||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fi-----------He~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFV-----------HDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTT-----------TTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHH-----------HhhccCCcCC
Confidence 4877887775433 5679999999996333 3334789988
No 232
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=31.69 E-value=3.9 Score=27.49 Aligned_cols=46 Identities=28% Similarity=0.659 Sum_probs=25.2
Q ss_pred CCCccCcccccCCCccEecCCCC-------ccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618 319 SDVELCCICFENLCTIEIKPCGH-------QMCAHCTLALCCHKKPDIITAVPEVPACPFCRC 374 (460)
Q Consensus 319 ~~~~~C~iC~~~~~~~~~~~CgH-------~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~ 374 (460)
.+...|.||.... ....||| .+|.+|.-.+ +.......+.|-+||+
T Consensus 7 ~d~~~C~iC~KTK---FADG~Gh~C~yCk~r~CaRCGg~v-------~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTK---FADGCGHNCSYCQTKFCARCGGRV-------SLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSC---CCSSCCEEBTTTCCEECTTSEEEE-------ESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccce---eccCCCccccccCCeeecccCCEe-------eecCCeEEEEehhhhh
Confidence 3567899997421 2234555 4577776444 1122233466777765
No 233
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=31.25 E-value=36 Score=23.93 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=11.1
Q ss_pred cCCCCCCCCccccccc
Q 012618 361 TAVPEVPACPFCRCSI 376 (460)
Q Consensus 361 ~~~~~~~~CP~Cr~~i 376 (460)
........||.|+..-
T Consensus 51 ~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 51 TKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCSSCCCCTTTSSCS
T ss_pred cCCCCCEECCCCCccc
Confidence 3344668999998754
No 234
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=30.89 E-value=21 Score=27.55 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.4
Q ss_pred CccCcccccCCCccEecCCCCccch
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCA 345 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~ 345 (460)
...|..|......-+++-|||+.|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 3569999998888889999999883
No 235
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.82 E-value=13 Score=27.44 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=28.4
Q ss_pred CCccCcccccCCC---c--cEecCCCCccchhhHHHHhhcCCCCcc----cCCCCCCCCcccccccc
Q 012618 320 DVELCCICFENLC---T--IEIKPCGHQMCAHCTLALCCHKKPDII----TAVPEVPACPFCRCSIA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~---~--~~~~~CgH~~C~~C~~~~~~~~~~~~~----~~~~~~~~CP~Cr~~i~ 377 (460)
....|.||..... + +.+-.|...+-..|. . +... ......+.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl-----~--Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCH-----K--PQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTS-----S--SCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccC-----C--CcccccccCCCCCCeeCccccchhh
Confidence 3567999997642 2 222345444444443 1 1111 13456689999988654
No 236
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=29.38 E-value=14 Score=20.12 Aligned_cols=10 Identities=30% Similarity=0.963 Sum_probs=7.6
Q ss_pred CCCccccccc
Q 012618 367 PACPFCRCSI 376 (460)
Q Consensus 367 ~~CP~Cr~~i 376 (460)
..||+|.+-.
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 5799998753
No 237
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.99 E-value=33 Score=21.88 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=13.9
Q ss_pred CCCCCCCcccccccceeee
Q 012618 363 VPEVPACPFCRCSIANLVA 381 (460)
Q Consensus 363 ~~~~~~CP~Cr~~i~~~~~ 381 (460)
.+....||+|..+-..+..
T Consensus 27 lP~dw~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 27 LPDDWCCPVCGVSKDQFSP 45 (46)
T ss_dssp SCTTCBCTTTCCBGGGEEE
T ss_pred CCCCCcCcCCCCcHHHcEe
Confidence 3555789999998776653
No 238
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.39 E-value=90 Score=19.84 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=24.2
Q ss_pred cCcccccCCC---ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618 323 LCCICFENLC---TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375 (460)
Q Consensus 323 ~C~iC~~~~~---~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 375 (460)
.|.||..... -+....|...|-..|... ...........||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p-------~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP-------ALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT-------TCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC-------CcCCCCCCcEECcCcccc
Confidence 3778875432 223344555555555521 112233456899999763
No 239
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.67 E-value=55 Score=22.99 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=26.6
Q ss_pred CCccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 320 DVELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 320 ~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
+...|.+|...... +.+-.|..-|-..|. .-.. .........||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv-----~~~~--~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCV-----GIMA--APPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHH-----TCSS--CCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccC-----CCCc--cCCCCCCEEChhccCchh
Confidence 44569999876433 222334434434444 1111 111224689999988764
No 240
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.67 E-value=17 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=10.0
Q ss_pred CCCccccccccee
Q 012618 367 PACPFCRCSIANL 379 (460)
Q Consensus 367 ~~CP~Cr~~i~~~ 379 (460)
-.||+|.......
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 6799999876554
No 241
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=25.29 E-value=75 Score=23.31 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=9.3
Q ss_pred CCccCcccccCCCc
Q 012618 320 DVELCCICFENLCT 333 (460)
Q Consensus 320 ~~~~C~iC~~~~~~ 333 (460)
....|.||-+....
T Consensus 16 g~h~c~vCgd~asf 29 (87)
T 2lze_A 16 GKHICAICGNNAED 29 (87)
T ss_dssp CSSSCSSSSSSSSS
T ss_pred CCEEccCCCCccce
Confidence 34569999875543
No 242
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=24.91 E-value=38 Score=32.20 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=32.3
Q ss_pred ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618 322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i 376 (460)
..|.+=+.+...++- ..|.|.-|..-...+-.. .....+.||+|...+
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~-------~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQ-------LQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHH-------HHSCCCBCTTTCCBC
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHh-------hcCCceeCCCCCccc
Confidence 468888777777665 689998776654333111 112348999999887
No 243
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.84 E-value=39 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.605 Sum_probs=15.0
Q ss_pred CCCCCCCcccccccceeeeE
Q 012618 363 VPEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 363 ~~~~~~CP~Cr~~i~~~~~~ 382 (460)
.+....||+|...-..|..+
T Consensus 33 lP~dw~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 33 IPDDWVCPLCGVGKDEFEEV 52 (54)
T ss_dssp SCTTCBCTTTCCBGGGEEEC
T ss_pred CCCCCcCcCCCCcHHHceEc
Confidence 35557999999997777654
No 244
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=24.55 E-value=95 Score=29.89 Aligned_cols=63 Identities=22% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618 90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169 (460)
Q Consensus 90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~ 169 (460)
+..|+...|+..+..|.++. ..-|....+..+. .+. -.-|.|.+|+|+
T Consensus 30 v~e~~~~~ve~y~~~gg~~~-----r~lt~~e~~lln~--------------------------~~a-f~~g~tlvhlai 77 (454)
T 3zrh_A 30 VVEGDLAAIEAYKSSGGDIA-----RQLTADEVRLLNR--------------------------PSA-FDVGYTLVHLAI 77 (454)
T ss_dssp HHHTCHHHHHHHHTTTCCTT-----CCCCHHHHHHHCC--------------------------TTT-CCTTCCHHHHHH
T ss_pred HHcCChhHHHHHHhcCCchh-----cccCHHHHHHhCC--------------------------Ccc-cccCchhhhhhh
Confidence 34578888888888777762 2234433332221 111 246899999999
Q ss_pred HcCCHHHHHHHHHcC
Q 012618 170 RQGWSECVHTLLDNG 184 (460)
Q Consensus 170 ~~g~~~~v~~Ll~~g 184 (460)
+..+.+++..|+..+
T Consensus 78 r~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 78 RFQRQDMLAILLTEV 92 (454)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred hhhhhhHHHHhhhcc
Confidence 999999999999743
No 245
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.82 E-value=48 Score=27.74 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=12.6
Q ss_pred CCCcccccccceeeeE
Q 012618 367 PACPFCRCSIANLVAA 382 (460)
Q Consensus 367 ~~CP~Cr~~i~~~~~~ 382 (460)
..||+|..+-..+..+
T Consensus 154 ~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVVF 169 (170)
T ss_dssp SBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCHHHceec
Confidence 4899999988777654
No 246
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.19 E-value=32 Score=23.50 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=27.1
Q ss_pred CCccCcccccCC-----CccEecCCCCccchhhHHHHhhcCCCCcccC----CCCCCCCccccccc
Q 012618 320 DVELCCICFENL-----CTIEIKPCGHQMCAHCTLALCCHKKPDIITA----VPEVPACPFCRCSI 376 (460)
Q Consensus 320 ~~~~C~iC~~~~-----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~----~~~~~~CP~Cr~~i 376 (460)
+...|.||.... .-+....|...|-..|... +.+. ....+.||.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p--------~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP--------HIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS--------CCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC--------cccccccCCCCCEECCCCcCcc
Confidence 346799999762 2233345555544444411 1111 34568999998754
No 247
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.89 E-value=17 Score=33.84 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCccCcccccCCCccEec----CCCC--ccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618 320 DVELCCICFENLCTIEIK----PCGH--QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI 384 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~----~CgH--~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~ 384 (460)
....|.||-..+...++. .=|+ ..|.-|...| .-....||+|-.. ..+....+
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W-----------~~~R~~C~~Cg~~-~~l~y~~~ 239 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW-----------HYVRIKCSHCEES-KHLAYLSL 239 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE-----------ECCTTSCSSSCCC-SCCEEECC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE-----------eecCcCCcCCCCC-CCeeEEEe
Confidence 456799999988776554 2344 4499999777 2234789999998 44433333
No 248
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.89 E-value=76 Score=24.59 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=31.4
Q ss_pred ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618 322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN 378 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~ 378 (460)
-.|..|........+ ..=|..+|..|.... -.+.|+.|..+|..
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~-------------~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKN-------------HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHH-------------SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcC-------------cCccCcccCCcCCc
Confidence 457777776655333 345667799999776 22679999999984
No 249
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.81 E-value=57 Score=21.35 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=14.6
Q ss_pred CCCCCCcccccccceeeeE
Q 012618 364 PEVPACPFCRCSIANLVAA 382 (460)
Q Consensus 364 ~~~~~CP~Cr~~i~~~~~~ 382 (460)
+....||+|..+-+.|..+
T Consensus 33 P~dw~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 33 PDDWVCPLCGAPKSEFERI 51 (52)
T ss_dssp CTTCBCTTTCCBGGGEEEE
T ss_pred CCCCcCCCCCCCHHHcEEC
Confidence 4556899999987777654
No 250
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=22.51 E-value=45 Score=31.58 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=32.9
Q ss_pred ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618 322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA 377 (460)
Q Consensus 322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~ 377 (460)
..|.+=+.+...++- ..|.|.-|..-...+-... ....+.||+|...+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~-------~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNE-------KKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHH-------HSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHh-------hCCCeECCCCCcccC
Confidence 468888777777665 6899987766554431111 123489999999883
No 251
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.37 E-value=55 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=16.1
Q ss_pred CCCCCCcccccccceeeeEe
Q 012618 364 PEVPACPFCRCSIANLVAAR 383 (460)
Q Consensus 364 ~~~~~CP~Cr~~i~~~~~~~ 383 (460)
+....||+|..+-+.|..+.
T Consensus 58 PddW~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 58 PDDWSCPDCGAAKSDFEMVE 77 (81)
T ss_dssp CTTCCCTTTCCCGGGEEEEC
T ss_pred CCCCcCCCCCCCHHHcEEcc
Confidence 44468999999988888764
No 252
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=22.19 E-value=61 Score=23.60 Aligned_cols=28 Identities=18% Similarity=0.517 Sum_probs=17.1
Q ss_pred CCccCcccccCCCccEecCCCCccchhhHHH
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCTLA 350 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~ 350 (460)
+...|.||.+......+ |-..|..|.--
T Consensus 3 ~~~~C~VCg~~a~g~hy---Gv~sC~aCk~F 30 (84)
T 1hcq_A 3 ETRYCAVCNDYASGYHY---GVWSCEGCKAF 30 (84)
T ss_dssp CCCBCTTTCSBCCEEET---TEEECHHHHHH
T ss_pred CCCcCcEECCCCCCeee---CccchHHhhhh
Confidence 34679999987543322 22348888743
No 253
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=22.01 E-value=87 Score=23.04 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=16.4
Q ss_pred CccCcccccCCCccEecCCCCccchhhHH
Q 012618 321 VELCCICFENLCTIEIKPCGHQMCAHCTL 349 (460)
Q Consensus 321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~ 349 (460)
...|.||.+......+ |-..|..|.-
T Consensus 7 ~~~C~VCg~~a~g~hy---Gv~sC~aCk~ 32 (89)
T 2ebl_A 7 GIECVVCGDKSSGKHY---GQFTCEGCKS 32 (89)
T ss_dssp SCBCTTTCSBCCSEET---TEECCHHHHH
T ss_pred CCCCcEeCCCCcceEe---CchhhHHhhh
Confidence 3569999987544332 2244888874
No 254
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=21.87 E-value=54 Score=25.26 Aligned_cols=26 Identities=15% Similarity=0.510 Sum_probs=15.4
Q ss_pred CCccCcccccCCCccEecCCCCccchhhH
Q 012618 320 DVELCCICFENLCTIEIKPCGHQMCAHCT 348 (460)
Q Consensus 320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~ 348 (460)
....|.||.+......+ |-..|..|.
T Consensus 5 ~~~~C~VCg~~a~g~hy---Gv~sC~aCk 30 (110)
T 1kb2_A 5 VPRICGVCGDRATGFHF---NAMTCEGCK 30 (110)
T ss_dssp --CBCTTTCSBCCSEET---TEECCHHHH
T ss_pred cCCCCcEeCCCCCceEe---CchhHhhhh
Confidence 34679999886544322 223488886
No 255
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.76 E-value=58 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=13.1
Q ss_pred CCCCCCcccccccceeee
Q 012618 364 PEVPACPFCRCSIANLVA 381 (460)
Q Consensus 364 ~~~~~CP~Cr~~i~~~~~ 381 (460)
+....||+|..+-+.+..
T Consensus 34 P~dw~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 34 PDDWACPVCGASKDAFEK 51 (52)
T ss_dssp CTTCCCSSSCCCTTSCEE
T ss_pred CCCCcCCCCCCcHHHcEE
Confidence 444689999998766654
Done!