Your job contains 1 sequence.
>012622
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA
AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT
CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR
VLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDML
MDSALAVPTQKQSSYVSLVPPPPPRSTSKILPPITSLCPANIPIPALAKLDEHHHQGDHE
EDWLFGKQDAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSMLKTSLFDSTSQVGSSR
FLGSLNPNPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPVCAAPPSPPITTPSSSSSS
SNPPSTKEAAEVSAASGSKLLNNPSSTQQLNPEFNKKLQL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012622
(460 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2829928 - symbol:DRB3 "dsRNA-binding protein 3... 774 4.0e-83 2
TAIR|locus:2163016 - symbol:DRB5 "dsRNA-binding protein 5... 756 1.9e-81 2
TAIR|locus:2057491 - symbol:DRB2 "dsRNA-binding protein 2... 711 2.3e-74 2
TAIR|locus:2081620 - symbol:DRB4 "double-stranded-RNA-bin... 332 4.9e-30 1
UNIPROTKB|Q0IQN6 - symbol:DRB8 "Double-stranded RNA-bindi... 258 5.0e-22 2
TAIR|locus:2024407 - symbol:HYL1 "HYPONASTIC LEAVES 1" sp... 245 8.3e-19 1
ZFIN|ZDB-GENE-050309-206 - symbol:prkra "protein kinase, ... 128 1.4e-05 1
UNIPROTKB|F1MH34 - symbol:F1MH34 "Uncharacterized protein... 138 1.5e-05 2
UNIPROTKB|Q2HJ92 - symbol:PRKRA "Interferon-inducible dou... 128 1.7e-05 1
UNIPROTKB|J9P4M2 - symbol:PRKRA "Uncharacterized protein"... 128 1.7e-05 1
UNIPROTKB|O75569 - symbol:PRKRA "Interferon-inducible dou... 128 1.7e-05 1
UNIPROTKB|F1RZE0 - symbol:PRKRA "Uncharacterized protein"... 128 1.7e-05 1
MGI|MGI:1344375 - symbol:Prkra "protein kinase, interfero... 128 1.7e-05 1
RGD|1306707 - symbol:Prkra "protein kinase, interferon in... 128 1.7e-05 1
UNIPROTKB|Q4V8C7 - symbol:Prkra "Interferon-inducible dou... 128 1.7e-05 1
UNIPROTKB|P66666 - symbol:rnc "Ribonuclease 3" species:17... 124 2.3e-05 1
UNIPROTKB|Q5JW30 - symbol:STAU1 "Double-stranded RNA-bind... 127 9.2e-05 2
UNIPROTKB|F1Q1C5 - symbol:STAU1 "Uncharacterized protein"... 128 0.00012 2
UNIPROTKB|O95793 - symbol:STAU1 "Double-stranded RNA-bind... 127 0.00014 2
UNIPROTKB|F1NHE0 - symbol:STAU1 "Uncharacterized protein"... 127 0.00023 2
UNIPROTKB|Q5JW28 - symbol:STAU1 "Double-stranded RNA-bind... 111 0.00041 1
UNIPROTKB|Q6JPI2 - symbol:Stau "Staufen" species:8355 "Xe... 119 0.00063 1
UNIPROTKB|E2RQ94 - symbol:PRKRA "Uncharacterized protein"... 86 0.00066 2
>TAIR|locus:2829928 [details] [associations]
symbol:DRB3 "dsRNA-binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 HOGENOM:HOG000243232
EMBL:BT012284 EMBL:AP000602 EMBL:AK222128 IPI:IPI00525256
RefSeq:NP_001030779.2 RefSeq:NP_189329.3 UniGene:At.37133
ProteinModelPortal:Q9LJF5 SMR:Q9LJF5 STRING:Q9LJF5
EnsemblPlants:AT3G26932.1 EnsemblPlants:AT3G26932.2 GeneID:822310
KEGG:ath:AT3G26932 TAIR:At3g26932 eggNOG:NOG246955
InParanoid:Q2V3S2 OMA:SSVERNC PhylomeDB:Q9LJF5
ProtClustDB:CLSN2680394 Genevestigator:Q9LJF5 Uniprot:Q9LJF5
Length = 359
Score = 774 (277.5 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 149/185 (80%), Positives = 168/185 (90%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL+ LS++GPS+SLTARVLDETGIYKNLLQETAHRAGL+LPVYT+VRSGPGH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM+F GE AKTKKQAEKNAAIAAW +L++MP LD L + EE++Q IVAR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPL------RGEEKEQEIVAR 174
Query: 181 VLSNF 185
VLS F
Sbjct: 175 VLSRF 179
Score = 78 (32.5 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 386 NPQRIAPAVQIRSVIPVCAA 405
N Q++APAV IRSVIPVC+A
Sbjct: 309 NHQKLAPAVHIRSVIPVCSA 328
>TAIR|locus:2163016 [details] [associations]
symbol:DRB5 "dsRNA-binding protein 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010267 "production
of ta-siRNAs involved in RNA interference" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0051607 "defense response to virus"
evidence=RCA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 HOGENOM:HOG000243232 ProtClustDB:CLSN2680394
EMBL:AB010072 EMBL:AK117808 EMBL:BT009653 IPI:IPI00534111
RefSeq:NP_198923.2 UniGene:At.30254 ProteinModelPortal:Q8GY79
SMR:Q8GY79 IntAct:Q8GY79 STRING:Q8GY79 EnsemblPlants:AT5G41070.1
GeneID:834109 KEGG:ath:AT5G41070 TAIR:At5g41070 eggNOG:NOG295240
InParanoid:Q8GY79 OMA:LRWINLL PhylomeDB:Q8GY79
Genevestigator:Q8GY79 Uniprot:Q8GY79
Length = 393
Score = 756 (271.2 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 149/185 (80%), Positives = 166/185 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEV+LNVLS+R PS+SLTA++LDETGIYKNLLQETAHRAGL+LP+YT+VRSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM FTGE AKTKKQAEKNAAIAAWS+LK+M +LDS + EE++Q VAR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDS-------QDEEKEQEAVAR 173
Query: 181 VLSNF 185
VLS F
Sbjct: 174 VLSRF 178
Score = 80 (33.2 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 30/82 (36%), Positives = 39/82 (47%)
Query: 330 KSSIQKPFPQL--DTSMLKTSLFDSTSQVGSSRFLG--SLNPNPITPTSIRAKSMYTGG- 384
KSS PF Q D S + +T + S + S + P S + + GG
Sbjct: 248 KSSKILPFIQQYKDRSSQEAKTETATEMINSKAKVNETSTRLSKQMPFSDMNRYNFVGGC 307
Query: 385 -FNPQRIAPAVQIRSVIPVCAA 405
NP +APAVQ+RSVIPV AA
Sbjct: 308 SVNPYSLAPAVQMRSVIPVFAA 329
Score = 42 (19.8 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 335 KPFPQLDTSMLKTSLFDSTSQVGSSRFLGS 364
KP P L+ S L +S+ + TS S L +
Sbjct: 333 KPNPNLNPSSLSSSVNEFTSSNNSCSVLNT 362
>TAIR|locus:2057491 [details] [associations]
symbol:DRB2 "dsRNA-binding protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP]
[GO:0070919 "production of siRNA involved in chromatin silencing by
small RNA" evidence=IMP] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0051607 "defense
response to virus" evidence=RCA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR Gene3D:3.30.160.20
GO:GO:0003725 EMBL:AC006283 GO:GO:0035196 EMBL:AY034976
EMBL:AY062965 IPI:IPI00547657 PIR:B84684 RefSeq:NP_565672.1
UniGene:At.13732 ProteinModelPortal:Q9SKN2 SMR:Q9SKN2 IntAct:Q9SKN2
STRING:Q9SKN2 PRIDE:Q9SKN2 EnsemblPlants:AT2G28380.1 GeneID:817386
KEGG:ath:AT2G28380 TAIR:At2g28380 eggNOG:NOG291691
HOGENOM:HOG000243232 InParanoid:Q9SKN2 OMA:PCHSMAP PhylomeDB:Q9SKN2
ProtClustDB:CLSN2688512 Genevestigator:Q9SKN2 GO:GO:0070919
Uniprot:Q9SKN2
Length = 434
Score = 711 (255.3 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 136/185 (73%), Positives = 154/185 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH P+FT
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTG+PAK KKQAEKNAA+AAWS+LK++ S + E + +E +Q I+AR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 VLSNF 185
L N+
Sbjct: 181 ALINY 185
Score = 58 (25.5 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 368 NPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPVCAA 405
N P+S+ S+ P RIAP V IR+ +PV A+
Sbjct: 314 NTQLPSSVYVPSLMRTA-PPVRIAPPVTIRTAVPVFAS 350
Score = 41 (19.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 390 IAPAVQIRSVIPVCAA 405
+AP V IR+ +PV +A
Sbjct: 288 MAPPVTIRTAVPVFSA 303
>TAIR|locus:2081620 [details] [associations]
symbol:DRB4 "double-stranded-RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISS;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA;IMP] [GO:0060145 "viral gene silencing in virus
induced gene silencing" evidence=IMP] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP]
[GO:0070919 "production of siRNA involved in chromatin silencing by
small RNA" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=RCA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0019048 Gene3D:3.30.160.20
EMBL:AL162651 GO:GO:0003725 GO:GO:0010267 GO:GO:0035196
GO:GO:0070919 EMBL:AB455097 EMBL:AY074363 EMBL:AY150509
IPI:IPI00529941 IPI:IPI00914309 PIR:T48069 RefSeq:NP_001154686.1
RefSeq:NP_191839.2 RefSeq:NP_974480.1 UniGene:At.34049
ProteinModelPortal:Q8H1D4 SMR:Q8H1D4 IntAct:Q8H1D4 STRING:Q8H1D4
PaxDb:Q8H1D4 PRIDE:Q8H1D4 EnsemblPlants:AT3G62800.1
EnsemblPlants:AT3G62800.2 GeneID:825455 KEGG:ath:AT3G62800
TAIR:At3g62800 eggNOG:NOG306267 HOGENOM:HOG000072681
InParanoid:Q8H1D4 OMA:YANEREG PhylomeDB:Q8H1D4
ProtClustDB:CLSN2690620 Genevestigator:Q8H1D4 GO:GO:0060145
Uniprot:Q8H1D4
Length = 355
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 79/184 (42%), Positives = 105/184 (57%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ A + LP Y REGP HAPRF+ +V F G+ F+S + TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++A+ L+ + P +D YKNLLQE A + LP Y T SGP H P FT
Sbjct: 64 AKIAVASLTPQSPEG------IDVA--YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVE AG F+GE AKTKK AE +AA A+ ++K N +S P E+ + + +
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK---NGNSNQTGSPTLPSERQEDVNSN 172
Query: 181 VLSN 184
V S+
Sbjct: 173 VKSS 176
>UNIPROTKB|Q0IQN6 [details] [associations]
symbol:DRB8 "Double-stranded RNA-binding protein 8"
species:39947 "Oryza sativa Japonica Group" [GO:0003725
"double-stranded RNA binding" evidence=IDA] InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GO:GO:0016075 EMBL:AP008218 GO:GO:0004525 EMBL:AB036988
EMBL:DQ009988 RefSeq:NP_001065960.1 UniGene:Os.3740
EnsemblPlants:LOC_Os12g01916.1 GeneID:4351288
KEGG:dosa:Os12t0109900-02 KEGG:osa:4351288 Gramene:Q0IQN6
HOGENOM:HOG000119022 OMA:TPKPLKV ProtClustDB:CLSN2695502
PANTHER:PTHR11207 Uniprot:Q0IQN6
Length = 424
Score = 258 (95.9 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 61/155 (39%), Positives = 88/155 (56%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFES-PSYCTTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK++V N ++S P + + AE +
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
AAEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Score = 45 (20.9 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 306 GKQ----DAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSMLKTSLFDSTSQVGSSR 360
GKQ DA I +P KE++SS+ K Q+PF +DT+ML+ + ++G +R
Sbjct: 342 GKQEPSIDAAILQP--KEEASSV-----K---QEPF--IDTAMLQACKEAGSVELGPAR 388
Score = 37 (18.1 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 338 PQLDTSMLKTSLFDSTSQVGSSRFLGSLNPNPITPTSI 375
P+ + S +K F T+ + + + GS+ P T I
Sbjct: 355 PKEEASSVKQEPFIDTAMLQACKEAGSVELGPARDTVI 392
>TAIR|locus:2024407 [details] [associations]
symbol:HYL1 "HYPONASTIC LEAVES 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009733
"response to auxin stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IMP] [GO:0009737 "response to abscisic
acid stimulus" evidence=IMP] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0035279 "mRNA cleavage involved
in gene silencing by miRNA" evidence=IMP] [GO:0031054 "pre-miRNA
processing" evidence=IMP] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA;IMP] [GO:0015030 "Cajal
body" evidence=IDA] [GO:0035198 "miRNA binding" evidence=IDA]
[GO:0010445 "nuclear dicing body" evidence=IDA] [GO:0051607
"defense response to virus" evidence=RCA] [GO:0010305 "leaf
vascular tissue pattern formation" evidence=IMP] [GO:0010589 "leaf
proximal/distal pattern formation" evidence=IMP] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0009735
GO:GO:0009733 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0035198
GO:GO:0035279 GO:GO:0031054 GO:GO:0010267 GO:GO:0010305
EMBL:AC000132 EMBL:AF276440 EMBL:AY054631 EMBL:AY081525
EMBL:AK319123 IPI:IPI00525041 IPI:IPI00975255 PIR:H86230
RefSeq:NP_563850.1 UniGene:At.10223 PDB:2L2M PDB:2L2N PDB:3ADG
PDB:3ADI PDB:3ADJ PDBsum:2L2M PDBsum:2L2N PDBsum:3ADG PDBsum:3ADI
PDBsum:3ADJ ProteinModelPortal:O04492 SMR:O04492 DIP:DIP-33453N
IntAct:O04492 STRING:O04492 PaxDb:O04492 PRIDE:O04492
EnsemblPlants:AT1G09700.1 GeneID:837498 KEGG:ath:AT1G09700
TAIR:At1g09700 eggNOG:NOG237225 InParanoid:O04492 OMA:CMNGLKE
ProtClustDB:CLSN2916994 EvolutionaryTrace:O04492
Genevestigator:O04492 GO:GO:0010445 GO:GO:0010589 Uniprot:O04492
Length = 419
Score = 245 (91.3 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 60/169 (35%), Positives = 93/169 (55%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFES-PSYCTTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F+++V +G + S P + + AE +
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 73
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHVPI 118
AAEVAL L+ ++ + ETG+ KNLLQE A + +P+Y + G V
Sbjct: 74 AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
FTCTVE+ G+ +TG +TKK AE +A A A++ ++L N T
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS-DTKNNLANYNT 181
>ZFIN|ZDB-GENE-050309-206 [details] [associations]
symbol:prkra "protein kinase, interferon-inducible
double stranded RNA dependent activator" species:7955 "Danio rerio"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0030422
"production of siRNA involved in RNA interference" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001159 InterPro:IPR007110
Pfam:PF00035 PROSITE:PS50137 PROSITE:PS50835 SMART:SM00358
InterPro:IPR014720 ZFIN:ZDB-GENE-050309-206 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 GeneTree:ENSGT00530000063014
EMBL:FP102120 IPI:IPI00920134 PRIDE:F1Q8C8
Ensembl:ENSDART00000140917 Bgee:F1Q8C8 Uniprot:F1Q8C8
Length = 289
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 49/155 (31%), Positives = 71/155 (45%)
Query: 18 PSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRS 76
P Y I +G H P F SV GE+ +T + A+H AAE AL +L + S+
Sbjct: 33 PKYELIHADGDAHQPSFMFSVTI-GEV-TCKGRGSTKKAAKHEAAEAALKLL--KRDSQI 88
Query: 77 LTAR----VLDETGIYKN---LLQETAHRAGLNLPVYTT-VRSGPGHVPIFTCTVELAGM 128
+ R + E G N +LQE A + LP Y + +GPGH+ FT L G+
Sbjct: 89 IDQRDNNGLSPEAGEASNPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGL 148
Query: 129 NFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLT 163
TG +KK A + AA + L+ + +T
Sbjct: 149 EETGS-GSSKKLARRAAAENMIAKLQSLSGSSEIT 182
>UNIPROTKB|F1MH34 [details] [associations]
symbol:F1MH34 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008298 "intracellular mRNA localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0030529 GO:GO:0003725 GO:GO:0008298
GeneTree:ENSGT00530000063014 OMA:MKPRIKK EMBL:DAAA02036827
IPI:IPI00708163 Ensembl:ENSBTAT00000000301 Uniprot:F1MH34
Length = 699
Score = 138 (53.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 49/154 (31%), Positives = 78/154 (50%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL--TARVLDETGIYKN 90
++ ++ G+ F T + A+H AA AL +L + PS L R +E + K+
Sbjct: 225 YQVELSVGGQQFNGKG--KTRQAAKHDAAAKALRILQSEPPSERLEVNGRESEEENLNKS 282
Query: 91 LLQETAHRA-GLNLPV-YTTVR-SGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAA 146
+ + A NLPV + R SGP H+ F V + F GE K+KK ++KNAA
Sbjct: 283 EISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVG--EFVGEGEGKSKKISKKNAA 340
Query: 147 IAAWSALKRMPNLDSLTNKETDKP--EEQDQAIV 178
IA LK++P L ++ E KP +++ ++IV
Sbjct: 341 IAVLEELKKLPPLPTV---ERVKPRIKKKTKSIV 371
Score = 39 (18.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 366 NPNPITPTSIRAKSMYTGGFNP 387
NP T T++ A+ + GG +P
Sbjct: 543 NPAKATVTAMIARELLYGGTSP 564
>UNIPROTKB|Q2HJ92 [details] [associations]
symbol:PRKRA "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=ISS]
[GO:0042474 "middle ear morphogenesis" evidence=ISS] [GO:0042473
"outer ear morphogenesis" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0006917 "induction of apoptosis"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0005622 "intracellular" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 EMBL:BC113246 IPI:IPI00711015
RefSeq:NP_001039335.1 UniGene:Bt.13570 ProteinModelPortal:Q2HJ92
SMR:Q2HJ92 PRIDE:Q2HJ92 Ensembl:ENSBTAT00000001451 GeneID:282875
KEGG:bta:282875 eggNOG:NOG245126 GeneTree:ENSGT00530000063014
HOGENOM:HOG000231919 InParanoid:Q2HJ92 OMA:PVTVCHG
OrthoDB:EOG41RPVB NextBio:20806403 ArrayExpress:Q2HJ92
Uniprot:Q2HJ92
Length = 313
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 75 RSLTARVL--DETGIYKNLL------QETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN L QE A G LP YT + GP H +T L
Sbjct: 106 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 165
Query: 126 AGMNFTGEPAKTKKQAEKNAA---IAAWSALKRMPNLDSLTN 164
TG+ A +KKQA++NAA +A +S + ++ SLTN
Sbjct: 166 ESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHI-SLTN 205
>UNIPROTKB|J9P4M2 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 CTD:8575 GeneTree:ENSGT00530000063014
EMBL:AAEX03017812 RefSeq:XP_545545.2 Ensembl:ENSCAFT00000044833
GeneID:488423 KEGG:cfa:488423 Uniprot:J9P4M2
Length = 313
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 75 RSLTARVL--DETGIYKNLL------QETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN L QE A G LP YT + GP H +T L
Sbjct: 106 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 165
Query: 126 AGMNFTGEPAKTKKQAEKNAA---IAAWSALKRMPNLDSLTN 164
TG+ A +KKQA++NAA +A +S + ++ SLTN
Sbjct: 166 ESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHI-SLTN 205
>UNIPROTKB|O75569 [details] [associations]
symbol:PRKRA "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0042473 "outer ear morphogenesis"
evidence=IEA] [GO:0042474 "middle ear morphogenesis" evidence=IEA]
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042803 "protein
homodimerization activity" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0009615 "response to virus"
evidence=TAS] [GO:0006955 "immune response" evidence=TAS]
[GO:0008047 "enzyme activator activity" evidence=TAS] [GO:0008285
"negative regulation of cell proliferation" evidence=TAS]
[GO:0043085 "positive regulation of catalytic activity"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
GO:GO:0048471 GO:GO:0008285 GO:GO:0006955 GO:GO:0006950
GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468 GO:GO:0009615
EMBL:CH471058 GO:GO:0003725 GO:GO:0030422
Pathway_Interaction_DB:ceramidepathway GO:GO:0008047 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 EMBL:AC009948 CTD:8575 eggNOG:NOG245126
HOGENOM:HOG000231919 OMA:PVTVCHG OrthoDB:EOG41RPVB EMBL:AF072860
EMBL:AF083033 EMBL:AY251164 EMBL:AL136615 EMBL:AL833867
EMBL:BT007243 EMBL:AK290601 EMBL:CR533525 EMBL:AK223107
EMBL:BC009470 IPI:IPI00021167 IPI:IPI00718940 IPI:IPI00719567
RefSeq:NP_001132989.1 RefSeq:NP_001132990.1 RefSeq:NP_003681.1
UniGene:Hs.570274 PDB:2DIX PDBsum:2DIX ProteinModelPortal:O75569
SMR:O75569 IntAct:O75569 MINT:MINT-5003897 STRING:O75569
PhosphoSite:O75569 PaxDb:O75569 PRIDE:O75569 DNASU:8575
Ensembl:ENST00000325748 Ensembl:ENST00000432031
Ensembl:ENST00000487082 GeneID:8575 KEGG:hsa:8575 UCSC:uc002umd.3
UCSC:uc002ume.3 GeneCards:GC02M179260 HGNC:HGNC:9438 HPA:CAB004648
MIM:603424 MIM:612067 neXtProt:NX_O75569 Orphanet:210571
PharmGKB:PA33780 HOVERGEN:HBG001700 InParanoid:O75569
PhylomeDB:O75569 EvolutionaryTrace:O75569 GenomeRNAi:8575
NextBio:32165 ArrayExpress:O75569 Bgee:O75569 CleanEx:HS_PRKRA
CleanEx:HS_RAX Genevestigator:O75569 GermOnline:ENSG00000180228
Uniprot:O75569
Length = 313
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 75 RSLTARVL--DETGIYKNLL------QETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN L QE A G LP YT + GP H +T L
Sbjct: 106 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 165
Query: 126 AGMNFTGEPAKTKKQAEKNAA---IAAWSALKRMPNLDSLTN 164
TG+ A +KKQA++NAA +A +S + ++ SLTN
Sbjct: 166 ESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHI-SLTN 205
>UNIPROTKB|F1RZE0 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042474 "middle ear morphogenesis" evidence=IEA] [GO:0042473
"outer ear morphogenesis" evidence=IEA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0006468 "protein phosphorylation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005737 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0003725 GO:GO:0030422 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 CTD:8575 GeneTree:ENSGT00530000063014
OMA:PVTVCHG EMBL:CU550661 RefSeq:XP_001927740.1 UniGene:Ssc.6789
Ensembl:ENSSSCT00000017418 GeneID:100155653 KEGG:ssc:100155653
Uniprot:F1RZE0
Length = 313
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 75 RSLTARVL--DETGIYKNLL------QETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN L QE A G LP YT + GP H +T L
Sbjct: 106 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 165
Query: 126 AGMNFTGEPAKTKKQAEKNAA---IAAWSALKRMPNLDSLTN 164
TG+ A +KKQA++NAA +A +S + ++ SLTN
Sbjct: 166 ESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHI-SLTN 205
>MGI|MGI:1344375 [details] [associations]
symbol:Prkra "protein kinase, interferon inducible double
stranded RNA dependent activator" species:10090 "Mus musculus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=IDA] [GO:0006917 "induction of apoptosis"
evidence=IDA] [GO:0006950 "response to stress" evidence=IDA]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=ISO] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0042473 "outer ear
morphogenesis" evidence=IMP] [GO:0042474 "middle ear morphogenesis"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0048705 "skeletal system morphogenesis"
evidence=IMP] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1344375 GO:GO:0005737
GO:GO:0048471 GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20
GO:GO:0006468 GO:GO:0003725 GO:GO:0030422 GO:GO:0048705
GO:GO:0042474 GO:GO:0042473 CTD:8575 eggNOG:NOG245126
GeneTree:ENSGT00530000063014 HOGENOM:HOG000231919 OMA:PVTVCHG
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:AF083032 EMBL:AK012798
EMBL:AK155112 EMBL:BC011311 IPI:IPI00471256 RefSeq:NP_036001.1
UniGene:Mm.277250 ProteinModelPortal:Q9WTX2 SMR:Q9WTX2
STRING:Q9WTX2 PhosphoSite:Q9WTX2 PaxDb:Q9WTX2 PRIDE:Q9WTX2
Ensembl:ENSMUST00000002808 GeneID:23992 KEGG:mmu:23992
InParanoid:Q9WTX2 NextBio:303897 Bgee:Q9WTX2 CleanEx:MM_RAX
Genevestigator:Q9WTX2 GermOnline:ENSMUSG00000002731 Uniprot:Q9WTX2
Length = 313
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 75 RSLTARVL--DETGIYKNLL------QETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN L QE A G LP YT + GP H +T L
Sbjct: 106 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 165
Query: 126 AGMNFTGEPAKTKKQAEKNAA---IAAWSALKRMPNLDSLTN 164
TG+ A +KKQA++NAA +A +S + ++ SLTN
Sbjct: 166 ESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHI-SLTN 205
>RGD|1306707 [details] [associations]
symbol:Prkra "protein kinase, interferon inducible double
stranded RNA dependent activator" species:10116 "Rattus norvegicus"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005622 "intracellular"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006468 "protein phosphorylation" evidence=IEA;ISO] [GO:0006917
"induction of apoptosis" evidence=IEA;ISO] [GO:0006950 "response to
stress" evidence=IEA;ISO] [GO:0016301 "kinase activity"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA;ISO;ISS] [GO:0042473 "outer ear
morphogenesis" evidence=IEA;ISO] [GO:0042474 "middle ear
morphogenesis" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1306707 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 eggNOG:NOG245126 HOGENOM:HOG000231919
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:BC097446 IPI:IPI00187767
RefSeq:NP_001019951.1 UniGene:Rn.3217 ProteinModelPortal:Q4V8C7
SMR:Q4V8C7 PhosphoSite:Q4V8C7 PRIDE:Q4V8C7 GeneID:311130
KEGG:rno:311130 UCSC:RGD:1306707 InParanoid:Q4V8C7 NextBio:663036
Genevestigator:Q4V8C7 GermOnline:ENSRNOG00000011195 Uniprot:Q4V8C7
Length = 313
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 75 RSLTARVL--DETGIYKNLL------QETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN L QE A G LP YT + GP H +T L
Sbjct: 106 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 165
Query: 126 AGMNFTGEPAKTKKQAEKNAA---IAAWSALKRMPNLDSLTN 164
TG+ A +KKQA++NAA +A +S + ++ SLTN
Sbjct: 166 ESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHI-SLTN 205
>UNIPROTKB|Q4V8C7 [details] [associations]
symbol:Prkra "Interferon-inducible double stranded
RNA-dependent protein kinase activator A" species:10116 "Rattus
norvegicus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 RGD:1306707 GO:GO:0005737 GO:GO:0048471
GO:GO:0006950 GO:GO:0006917 Gene3D:3.30.160.20 GO:GO:0006468
GO:GO:0003725 GO:GO:0030422 GO:GO:0048705 GO:GO:0042474
GO:GO:0042473 CTD:8575 eggNOG:NOG245126 HOGENOM:HOG000231919
OrthoDB:EOG41RPVB HOVERGEN:HBG001700 EMBL:BC097446 IPI:IPI00187767
RefSeq:NP_001019951.1 UniGene:Rn.3217 ProteinModelPortal:Q4V8C7
SMR:Q4V8C7 PhosphoSite:Q4V8C7 PRIDE:Q4V8C7 GeneID:311130
KEGG:rno:311130 UCSC:RGD:1306707 InParanoid:Q4V8C7 NextBio:663036
Genevestigator:Q4V8C7 GermOnline:ENSRNOG00000011195 Uniprot:Q4V8C7
Length = 313
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 75 RSLTARVL--DETGIYKNLL------QETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN L QE A G LP YT + GP H +T L
Sbjct: 106 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 165
Query: 126 AGMNFTGEPAKTKKQAEKNAA---IAAWSALKRMPNLDSLTN 164
TG+ A +KKQA++NAA +A +S + ++ SLTN
Sbjct: 166 ESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHI-SLTN 205
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 124 (48.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 47/156 (30%), Positives = 69/156 (44%)
Query: 6 LQELAQRSCFN-LPSYTCIREGPDHAPRF-KASVNFNGEIFESPSYCTTLRQAEHAAAEV 63
L ++A+R C L + + G + K+S+ +G ES L+ A EV
Sbjct: 84 LADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADG--MESLLGAIYLQHGMEKAREV 141
Query: 64 ALNVLSTRGPSRSLTARVLDETGI-YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCT 122
L + GP L A G+ +K LQE GL P Y +GP H FT
Sbjct: 142 ILRLF---GPL--LDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAV 196
Query: 123 VELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
V + + ++KK+AE+ AA AAW AL+ + N
Sbjct: 197 VVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDN 232
>UNIPROTKB|Q5JW30 [details] [associations]
symbol:STAU1 "Double-stranded RNA-binding protein Staufen
homolog 1" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AL133174 UniGene:Hs.596704
HGNC:HGNC:11370 HOGENOM:HOG000231025 HOVERGEN:HBG005013
ChiTaRS:STAU1 IPI:IPI00641873 SMR:Q5JW30 STRING:Q5JW30
Ensembl:ENST00000371792 Uniprot:Q5JW30
Length = 494
Score = 127 (49.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-PSR-SLTARVLDETGIYKN 90
++ ++ G+ F T + A+H AA AL +L P R + R +E + K+
Sbjct: 46 YQVELSVGGQQFNGKG--KTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKS 103
Query: 91 LLQETAHRA-GLNLPV-YTTVR-SGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAA 146
+ + A NLPV + R SGP H+ F V + F GE K+KK ++KNAA
Sbjct: 104 EISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAA 161
Query: 147 IAAWSALKRMPNLDSL 162
IA LK++P L ++
Sbjct: 162 IAVLEELKKLPPLPAV 177
Score = 39 (18.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 366 NPNPITPTSIRAKSMYTGGFNP 387
NP T T++ A+ + GG +P
Sbjct: 362 NPAKATVTAMIARELLYGGTSP 383
>UNIPROTKB|F1Q1C5 [details] [associations]
symbol:STAU1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0030529 GO:GO:0003725
GO:GO:0008298 GeneTree:ENSGT00530000063014 EMBL:AAEX03013991
Ensembl:ENSCAFT00000018030 Uniprot:F1Q1C5
Length = 591
Score = 128 (50.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/154 (30%), Positives = 76/154 (49%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR--SLTARVLDETGIYKN 90
++ ++ G+ F T + A+H AA AL L + P + R +E + K+
Sbjct: 141 YQVELSVGGQQFNGKG--KTRQAAKHDAAAKALRTLQSEPPPERPEVNGRESEEENLNKS 198
Query: 91 LLQETAHRA-GLNLPV-YTTVR-SGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAA 146
+ + A NLPV + R SGP H+ F V + F GE K+KK ++KNAA
Sbjct: 199 EISQVFEIALKRNLPVNFEVARESGPPHMKSFVTKVSVG--EFVGEGEGKSKKISKKNAA 256
Query: 147 IAAWSALKRMPNLDSLTNKETDKP--EEQDQAIV 178
IA LK++P L ++ E KP +++ ++IV
Sbjct: 257 IAVLEELKKLPPLPTV---ERVKPRIKKKTKSIV 287
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 366 NPNPITPTSIRAKSMYTGGFNP 387
NP T T++ A+ + GG +P
Sbjct: 459 NPAKATVTAMIARELLYGGTSP 480
>UNIPROTKB|O95793 [details] [associations]
symbol:STAU1 "Double-stranded RNA-binding protein Staufen
homolog 1" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0005791 "rough endoplasmic
reticulum" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
EMBL:CH471077 GO:GO:0005875 GO:GO:0005791 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008298 GO:GO:0010494 EMBL:AF061939
EMBL:AF061941 EMBL:AF061938 EMBL:AF061940 EMBL:AJ132258
EMBL:AY529074 EMBL:AY546099 EMBL:AL136601 EMBL:AK292859
EMBL:AL133174 EMBL:BC050432 EMBL:BC095397 IPI:IPI00000001
IPI:IPI00218609 IPI:IPI00643664 RefSeq:NP_001032405.1
RefSeq:NP_004593.2 RefSeq:NP_059346.2 RefSeq:NP_059347.2
RefSeq:NP_059348.2 UniGene:Hs.596704 ProteinModelPortal:O95793
SMR:O95793 IntAct:O95793 MINT:MINT-1160018 STRING:O95793
PhosphoSite:O95793 PaxDb:O95793 PRIDE:O95793 DNASU:6780
Ensembl:ENST00000340954 Ensembl:ENST00000347458
Ensembl:ENST00000360426 Ensembl:ENST00000371802
Ensembl:ENST00000371805 Ensembl:ENST00000371828
Ensembl:ENST00000371856 GeneID:6780 KEGG:hsa:6780 UCSC:uc002xua.3
CTD:6780 GeneCards:GC20M047729 HGNC:HGNC:11370 HPA:CAB020839
MIM:601716 neXtProt:NX_O95793 PharmGKB:PA36188 eggNOG:NOG299502
HOGENOM:HOG000231025 HOVERGEN:HBG005013 InParanoid:O95793
OMA:MKPRIKK OrthoDB:EOG418BN9 PhylomeDB:O95793 ChiTaRS:STAU1
GenomeRNAi:6780 NextBio:26468 ArrayExpress:O95793 Bgee:O95793
CleanEx:HS_STAU1 Genevestigator:O95793 GermOnline:ENSG00000124214
Uniprot:O95793
Length = 577
Score = 127 (49.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-PSR-SLTARVLDETGIYKN 90
++ ++ G+ F T + A+H AA AL +L P R + R +E + K+
Sbjct: 127 YQVELSVGGQQFNGKG--KTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKS 184
Query: 91 LLQETAHRA-GLNLPV-YTTVR-SGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAA 146
+ + A NLPV + R SGP H+ F V + F GE K+KK ++KNAA
Sbjct: 185 EISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAA 242
Query: 147 IAAWSALKRMPNLDSL 162
IA LK++P L ++
Sbjct: 243 IAVLEELKKLPPLPAV 258
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 366 NPNPITPTSIRAKSMYTGGFNP 387
NP T T++ A+ + GG +P
Sbjct: 445 NPAKATVTAMIARELLYGGTSP 466
>UNIPROTKB|F1NHE0 [details] [associations]
symbol:STAU1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GeneTree:ENSGT00530000063014 EMBL:AADN02019284 IPI:IPI00821077
Ensembl:ENSGALT00000007541 ArrayExpress:F1NHE0 Uniprot:F1NHE0
Length = 694
Score = 127 (49.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 45/152 (29%), Positives = 75/152 (49%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-PSR-SLTARVLDETGIYKN 90
++ ++ G+ F T + A+H AA AL VL P + + + D+ + K+
Sbjct: 221 YQVELSIGGQQFHGKG--RTRQAAKHDAAAKALKVLQNEPLPEKPEVNGKEPDDENLNKS 278
Query: 91 LLQETAHRA-GLNLPVY--TTVRSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAA 146
+ + A NLPV T SGP H+ F V + F GE K+KK ++KNAA
Sbjct: 279 EISQVFEIALKRNLPVNFEVTKESGPPHMKSFVTKVSVG--EFMGEGEGKSKKISKKNAA 336
Query: 147 IAAWSALKRMPNLDSLTNKETDKPEEQDQAIV 178
IA LK++P L ++ K + +++ ++IV
Sbjct: 337 IAVLEELKKLPPLPTV-EKMKPRIKKKTKSIV 367
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 366 NPNPITPTSIRAKSMYTGGFNP 387
NP T T++ A+ + GG +P
Sbjct: 538 NPAKATVTAMIARELLYGGTSP 559
>UNIPROTKB|Q5JW28 [details] [associations]
symbol:STAU1 "Double-stranded RNA-binding protein Staufen
homolog 1" species:9606 "Homo sapiens" [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003725 EMBL:AL133174 UniGene:Hs.596704
HGNC:HGNC:11370 HOGENOM:HOG000231025 ChiTaRS:STAU1 IPI:IPI00645009
SMR:Q5JW28 STRING:Q5JW28 Ensembl:ENST00000437404 Uniprot:Q5JW28
Length = 199
Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
Identities = 42/142 (29%), Positives = 65/142 (45%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-PSR-SLTARVLDETGIYKN 90
++ ++ G+ F T + A+H AA AL +L P R + R +E + K+
Sbjct: 46 YQVELSVGGQQFNGKG--KTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKS 103
Query: 91 LLQETAHRA-GLNLPV--------YTTVRSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQ 140
+ + A NLPV SGP H+ F V + F GE K+KK
Sbjct: 104 EISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKI 161
Query: 141 AEKNAAIAAWSALKRMPNLDSL 162
++KNAAIA LK++P L ++
Sbjct: 162 SKKNAAIAVLEELKKLPPLPAV 183
>UNIPROTKB|Q6JPI2 [details] [associations]
symbol:Stau "Staufen" species:8355 "Xenopus laevis"
[GO:0005938 "cell cortex" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IPI] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
GO:GO:0005938 Gene3D:3.30.160.20 GO:GO:0030529 GO:GO:0003725
HOVERGEN:HBG005013 EMBL:AY342402 UniGene:Xl.22905
ProteinModelPortal:Q6JPI2 SMR:Q6JPI2 Uniprot:Q6JPI2
Length = 712
Score = 119 (46.9 bits), Expect = 0.00063, P = 0.00063
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-PSR-SLTARVLDETGIYKN 90
++ ++ G+ F T + A+H AA AL L P + +L + DE + K+
Sbjct: 239 YQVELSVGGQQFHGKG--RTRQAAKHDAAARALKSLHHEPLPDKPALNGKAADEENLNKS 296
Query: 91 LLQ---ETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAA 146
+ E A + +++ T +GP H+ F V + G F GE K+KK ++KNAA
Sbjct: 297 EISQVFEIALKRNMSVNFEVTKETGPPHMKSFLTKV-IVG-EFLGEGEGKSKKISKKNAA 354
Query: 147 IAAWSALKRMPNLDSLTNKETDKPEEQDQAIV 178
IA L+++P L ++ K K +++ ++IV
Sbjct: 355 IAVLEELRKLPPLPTV-EKMRPKIKKKTKSIV 385
>UNIPROTKB|E2RQ94 [details] [associations]
symbol:PRKRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GeneTree:ENSGT00530000063014 OMA:PVTVCHG
EMBL:AAEX03017812 Ensembl:ENSCAFT00000021978 NextBio:20861775
Uniprot:E2RQ94
Length = 351
Score = 86 (35.3 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 92 LQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
LQE A G LP YT + GP H +T L TG+ A +KKQA++NAA
Sbjct: 155 LQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGA-SKKQAKRNAA 209
Score = 71 (30.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL 68
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 43 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINIL 94
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 460 373 0.00087 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 614 (65 KB)
Total size of DFA: 231 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.36u 0.11s 28.47t Elapsed: 00:00:02
Total cpu time: 28.36u 0.11s 28.47t Elapsed: 00:00:02
Start: Sat May 11 00:52:56 2013 End: Sat May 11 00:52:58 2013