BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012622
(460 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 296/499 (59%), Positives = 354/499 (70%), Gaps = 57/499 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALNVLSTRGPSRSLTARVLDETG+YKNLLQETAHRAGLNLPVYTTVRSGPGHVP+FT
Sbjct: 61 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGMNFTGE AKTKKQAEKNAAIAAWSALKR+PNL SL++ + ++Q +VAR
Sbjct: 121 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVAR 180
Query: 181 VLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDML 240
VLSNFR+KD++R RR DQ+QARRR+V R + + SS++ N+SQ Q WR +D+L
Sbjct: 181 VLSNFRSKDESR--PIRRWDQNQARRRMV----RGHGGSGSSSTSNNSQQFQKWRPMDLL 234
Query: 241 MDSALAVPT-QKQSSYVSLVPPPPPRSTSKILPPIT-----SLCPANIPIPALA------ 288
MDS T Q Q+ +V+L+PPPPPR+ SKILPPI+ SL P+ PIP A
Sbjct: 235 MDSVPEGGTAQNQNCFVALLPPPPPRTASKILPPISPRDTLSLYPSTRPIPVQAIGRSQV 294
Query: 289 KLDE-----HHHQGDHEEDWLFGKQDAIIKKPFEKE---DSSSIIVHGTKSSIQKPFPQL 340
K+ E HQ D EE+WL GK + +I+KP EKE ++++ V+G +SI +PFP
Sbjct: 295 KMPEVPTLLEEHQRD-EEEWLDGKSN-LIRKPTEKECPSNANASSVYGA-NSIYRPFPLP 351
Query: 341 DTSMLKTSLFDSTSQVGSSRFLGSLNP--NPITPTSIRA-------KSMYTGGFNPQRIA 391
+ L TSL DS Q + + NP NP TP++++ ++M TGGF P RIA
Sbjct: 352 NAGKLNTSLPDSPHQPHEQTHIKN-NPFGNP-TPSAMKGSAGIHIPRTMGTGGFQPHRIA 409
Query: 392 PAVQIRSVIPVCAAPPSPPITTPSSSSSSSNPPSTKEAAEVSAA--------SGSKL-LN 442
PAVQIRSVIPVCAA P SN P+ EA+ + + +G+ L N
Sbjct: 410 PAVQIRSVIPVCAA------PPPPMRLPPSNHPTRNEASPSALSASSSIPAHTGAGLKFN 463
Query: 443 NPS-STQQLNPEFNKKLQL 460
P + QL+ EFN KLQL
Sbjct: 464 KPELYSTQLSSEFN-KLQL 481
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 296/499 (59%), Positives = 354/499 (70%), Gaps = 57/499 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALNVLSTRGPSRSLTARVLDETG+YKNLLQETAHRAGLNLPVYTTVRSGPGHVP+FT
Sbjct: 64 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 123
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGMNFTGE AKTKKQAEKNAAIAAWSALKR+PNL SL++ + ++Q +VAR
Sbjct: 124 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVAR 183
Query: 181 VLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDML 240
VLSNFR+KD++R RR DQ+QARRR+V R + + SS++ N+SQ Q WR +D+L
Sbjct: 184 VLSNFRSKDESR--PIRRWDQNQARRRMV----RGHGGSGSSSTSNNSQQFQKWRPMDLL 237
Query: 241 MDSALAVPT-QKQSSYVSLVPPPPPRSTSKILPPIT-----SLCPANIPIPALA------ 288
MDS T Q Q+ +V+L+PPPPPR+ SKILPPI+ SL P+ PIP A
Sbjct: 238 MDSVPEGGTAQNQNCFVALLPPPPPRTASKILPPISPRDTLSLYPSTRPIPVQAIGRSQV 297
Query: 289 KLDE-----HHHQGDHEEDWLFGKQDAIIKKPFEKE---DSSSIIVHGTKSSIQKPFPQL 340
K+ E HQ D EE+WL GK + +I+KP EKE ++++ V+G +SI +PFP
Sbjct: 298 KMPEVPTLLEEHQRD-EEEWLDGKSN-LIRKPTEKECPSNANASSVYGA-NSIYRPFPLP 354
Query: 341 DTSMLKTSLFDSTSQVGSSRFLGSLNP--NPITPTSIRA-------KSMYTGGFNPQRIA 391
+ L TSL DS Q + + NP NP TP++++ ++M TGGF P RIA
Sbjct: 355 NAGKLNTSLPDSPHQPHEQTHIKN-NPFGNP-TPSAMKGSAGIHIPRTMGTGGFQPHRIA 412
Query: 392 PAVQIRSVIPVCAAPPSPPITTPSSSSSSSNPPSTKEAAEVSAA--------SGSKL-LN 442
PAVQIRSVIPVCAA P SN P+ EA+ + + +G+ L N
Sbjct: 413 PAVQIRSVIPVCAA------PPPPMRLPPSNHPTRNEASPSALSASSSIPAHTGAGLKFN 466
Query: 443 NPS-STQQLNPEFNKKLQL 460
P + QL+ EFN KLQL
Sbjct: 467 KPELYSTQLSSEFN-KLQL 484
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 296/499 (59%), Positives = 354/499 (70%), Gaps = 57/499 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALNVLSTRGPSRSLTARVLDETG+YKNLLQETAHRAGLNLPVYTTVRSGPGHVP+FT
Sbjct: 132 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 191
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGMNFTGE AKTKKQAEKNAAIAAWSALKR+PNL SL++ + ++Q +VAR
Sbjct: 192 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESREEQVVVAR 251
Query: 181 VLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDML 240
VLSNFR+KD++R RR DQ+QARRR+V R + + SS++ N+SQ Q WR +D+L
Sbjct: 252 VLSNFRSKDESR--PIRRWDQNQARRRMV----RGHGGSGSSSTSNNSQQFQKWRPMDLL 305
Query: 241 MDSALAVPT-QKQSSYVSLVPPPPPRSTSKILPPIT-----SLCPANIPIPALA------ 288
MDS T Q Q+ +V+L+PPPPPR+ SKILPPI+ SL P+ PIP A
Sbjct: 306 MDSVPEGGTAQNQNCFVALLPPPPPRTASKILPPISPRDTLSLYPSTRPIPVQAIGRSQV 365
Query: 289 KLDE-----HHHQGDHEEDWLFGKQDAIIKKPFEKE---DSSSIIVHGTKSSIQKPFPQL 340
K+ E HQ D EE+WL GK + +I+KP EKE ++++ V+G +SI +PFP
Sbjct: 366 KMPEVPTLLEEHQRD-EEEWLDGKSN-LIRKPTEKECPSNANASSVYGA-NSIYRPFPLP 422
Query: 341 DTSMLKTSLFDSTSQVGSSRFLGSLNP--NPITPTSIRA-------KSMYTGGFNPQRIA 391
+ L TSL DS Q + + NP NP TP++++ ++M TGGF P RIA
Sbjct: 423 NAGKLNTSLPDSPHQPHEQTHIKN-NPFGNP-TPSAMKGSAGIHIPRTMGTGGFQPHRIA 480
Query: 392 PAVQIRSVIPVCAAPPSPPITTPSSSSSSSNPPSTKEAAEVSAA--------SGSKL-LN 442
PAVQIRSVIPVCAA P SN P+ EA+ + + +G+ L N
Sbjct: 481 PAVQIRSVIPVCAA------PPPPMRLPPSNHPTRNEASPSALSASSSIPAHTGAGLKFN 534
Query: 443 NPS-STQQLNPEFNKKLQL 460
P + QL+ EFN KLQL
Sbjct: 535 KPELYSTQLSSEFN-KLQL 552
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKKQAE 142
E ++KN LQE A R+ NLP Y +R GP H P F +V G F T +QAE
Sbjct: 69 EVDMFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAE 128
Query: 143 KNAAIAAWSALKRMPNLDSLTNKETDK 169
AA A + L SLT + D+
Sbjct: 129 HAAAEVALNVLSTRGPSRSLTARVLDE 155
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 298/494 (60%), Positives = 344/494 (69%), Gaps = 54/494 (10%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY C+REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALNVLS+RGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTT+RSGPGHVP FT
Sbjct: 64 AEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFT 123
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKE-TDKPEEQDQAIVA 179
CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP+LD LTNKE + EEQDQA+VA
Sbjct: 124 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPSLDYLTNKEVVESREEQDQAVVA 183
Query: 180 RVLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQ--YQQHWRLL 237
RVLSNFR+KD+ N AR++D SQARRR+V + +RD SA+SS+S SS + QH +LL
Sbjct: 184 RVLSNFRSKDE-YNKQARKKDCSQARRRLV-KGYRDYSSASSSSSSTSSNSLHYQHRKLL 241
Query: 238 DMLMDSALAVPTQKQSSYVSLVPPPPPRSTSKILPPI----------TSLC-PANIPIPA 286
D+L+DSAL TQKQSS+VSL+PPPPPR+TSKILPP +S C P I +
Sbjct: 242 DLLLDSALDSSTQKQSSFVSLLPPPPPRTTSKILPPTSPIDNPYSYPSSRCNPHQIQVKG 301
Query: 287 LAKLDE-HHHQGDHEEDWLFGKQDAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSML 345
+ E HQ D EE+W + +I K+ S ++ + FP
Sbjct: 302 KQQTKEIEEHQKD-EEEWPGAIKKSIEKESSSSSVYGSSSLY-------RQFPHQ----- 348
Query: 346 KTSLFDSTSQVGSSRFLGSLNPNPITPTSIRAKS---MYTGGFNPQRIAPAVQIRSVIPV 402
+STS +G+ F S TP+SI S Y+G P RIAPAVQIRSVIPV
Sbjct: 349 -----ESTSHIGNRIFGPSSTSIKSTPSSIHMCSNSPFYSGMLYPHRIAPAVQIRSVIPV 403
Query: 403 CAAPPSPPITTPSSSSSSSNPPSTKEAA----------EVSAASG----SKLLNNPSS-- 446
CAAPP+ P+ + SSS T ++ EVS +S + PSS
Sbjct: 404 CAAPPAAVRPAPAPAPSSSTTTITAKSTQAGAGAGAAAEVSMSSSMVNKTTTTTEPSSHP 463
Query: 447 TQQLNPEFNKKLQL 460
TQ + EFNKKLQL
Sbjct: 464 TQLSSSEFNKKLQL 477
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/411 (58%), Positives = 269/411 (65%), Gaps = 72/411 (17%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALNVLS RGP+RSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVP+FT
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR PNLDSL++KE D EEQDQA+VAR
Sbjct: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRFPNLDSLSSKEVDTREEQDQAVVAR 180
Query: 181 VLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDML 240
VLSNFR+KD+ R AR+RD +QARRR+V R H+D+ A+SS++ N+ + +L
Sbjct: 181 VLSNFRSKDEGR--YARKRDHNQARRRMV-RGHKDSSGASSSSTSNNFLLWFNTNAEVLL 237
Query: 241 MDSALAVPTQKQSSYVSLVPPPPPRSTSKILPP------ITSLCPANIPIPALAKLDEHH 294
S + PTQ + + R + IL ITSL P N
Sbjct: 238 YVSPSSTPTQNK--FKDFATALTYRQSISILIEQAYSNTITSL-PDNTS----------Q 284
Query: 295 HQGDHEEDWLFGKQDAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSMLKTSLFDSTS 354
H+ H +FG + P P S +KT S++
Sbjct: 285 HESTHISSRIFGSTN--------------------------PSPMASIS-IKT---PSST 314
Query: 355 QVGSSRFLGSLNPNPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPVCAA 405
V F G NP RIAPAVQIRSVIPVCAA
Sbjct: 315 HVPRPMFTGGFNP--------------------HRIAPAVQIRSVIPVCAA 345
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 208/412 (50%), Positives = 250/412 (60%), Gaps = 90/412 (21%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEV+LNVLS+R PS+SLTA++LDETGIYKNLLQETAHRAGL+LP+YT+VRSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM FTGE AKTKKQAEKNAAIAAWS+LK+M +LDS + EE++Q VAR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDS-------QDEEKEQEAVAR 173
Query: 181 VLSNFRAKDDNRNNNARRRDQS-QARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDM 239
VLS F+ K+ RRR+ + Q RRR S N + R +++
Sbjct: 174 VLSRFKPKE------VRRRETTNQWRRRT------------SQQDSNKDLLIERLRWINL 215
Query: 240 LMDSA-----LAVPTQ-KQSSYVSLVPPPPPRSTSKILPPITSLCPANIPIPALAKLDEH 293
L + A + P Q K SS++SL+PPPPP +SKILP I +
Sbjct: 216 LTNQASSSSSTSTPNQHKNSSFISLIPPPPPPKSSKILPFI-----------------QQ 258
Query: 294 HHQGDHEEDWLFGKQDAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSMLKTSLFDST 353
+ +E + I K E S T+ S Q PF
Sbjct: 259 YKDRSSQEAKTETATEMINSKAKVNETS-------TRLSKQMPF---------------- 295
Query: 354 SQVGSSRFLGSLNPNPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPVCAA 405
S + F+G + NP + +APAVQ+RSVIPV AA
Sbjct: 296 SDMNRYNFVGGCSVNPYS------------------LAPAVQMRSVIPVFAA 329
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 209/414 (50%), Positives = 252/414 (60%), Gaps = 92/414 (22%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEV+LNVLS+R PS+SLTA++LDETGIYKNLLQETAHRAGL+LP+YT+VRSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM+FTGE AKTKKQAEKNAAIAAWS+LKRM +LDS + EE++Q VAR
Sbjct: 121 CTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLKRMSSLDS-------QDEEKEQEAVAR 173
Query: 181 VLSNFRAKDDNRNNNARRRDQS-QARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDM 239
VLS F+ K+ RRR+ + Q RRR S N + R +++
Sbjct: 174 VLSRFKPKE------VRRRETTNQWRRRT------------SQQDSNKDLLIERLRWINL 215
Query: 240 LMDSALAVPT--------QKQSSYVSLVPPPPPRSTSKILPPITSLCPANIPIPALAKLD 291
L + A + + KQ+S++ L+PPPPP +SKILP I
Sbjct: 216 LTNQASSSSSSSSSTQNQHKQTSFIPLIPPPPPPKSSKILPFI----------------- 258
Query: 292 EHHHQGDHEEDWLFGKQDAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSMLKTSLFD 351
+D Q+A + P E SS V+ T + K P D
Sbjct: 259 ------QQYKD--ISSQEAKTETPTEM-ISSKAKVNETSNRFSKQMPFSDN--------- 300
Query: 352 STSQVGSSRFLGSLNPNPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPVCAA 405
G F+G + NP++ +APAVQIRSVIPV AA
Sbjct: 301 -----GRYNFVGGCSVNPLS------------------LAPAVQIRSVIPVFAA 331
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 157/209 (75%), Positives = 183/209 (87%), Gaps = 12/209 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTC REGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL+ LS++GPS+SLTARVLDETGIYKNLLQETAHRAGL+LPVYT+VRSGPGH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM+F GE AKTKKQAEKNAAIAAW +L++MP+LD L + EE++Q +VAR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPSLDPL------RGEEKEQEVVAR 174
Query: 181 VLSNFRAKDDNRNNNARRRDQSQARRRVV 209
VLS FR K+ +RR+ +Q+RR V+
Sbjct: 175 VLSRFRPKE------VKRREPNQSRRTVI 197
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 152/192 (79%), Positives = 172/192 (89%), Gaps = 6/192 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL+ LS++GPS+SLTARVLDETGIYKNLLQETAHRAGL+LPVYT+VRSGPGH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM+F GE AKTKKQAEKNAAIAAW +L++MP LD L + EE++Q IVAR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPL------RGEEKEQEIVAR 174
Query: 181 VLSNFRAKDDNR 192
VLS FR K+ R
Sbjct: 175 VLSRFRPKEVKR 186
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 202/412 (49%), Positives = 243/412 (58%), Gaps = 99/412 (24%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEV+LNVLS+R PS+SLTA++LDETGIYKNLLQETAHRAGL+LP+YT+VRSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM FTGE AKTKKQAEKNAAIAAWS+LK+ +++Q VAR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKK----------------KKEQEAVAR 164
Query: 181 VLSNFRAKDDNRNNNARRRDQS-QARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDM 239
VLS F+ K+ RRR+ + Q RRR S N + R +++
Sbjct: 165 VLSRFKPKE------VRRRETTNQWRRRT------------SQQDSNKDLLIERLRWINL 206
Query: 240 LMDSA-----LAVPTQ-KQSSYVSLVPPPPPRSTSKILPPITSLCPANIPIPALAKLDEH 293
L + A + P Q K SS++SL+PPPPP +SKILP I +
Sbjct: 207 LTNQASSSSSTSTPNQHKNSSFISLIPPPPPPKSSKILPFI-----------------QQ 249
Query: 294 HHQGDHEEDWLFGKQDAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSMLKTSLFDST 353
+ +E + I K E S T+ S Q PF
Sbjct: 250 YKDRSSQEAKTETATEMINSKAKVNETS-------TRLSKQMPF---------------- 286
Query: 354 SQVGSSRFLGSLNPNPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPVCAA 405
S + F+G + NP + +APAVQ+RSVIPV AA
Sbjct: 287 SDMNRYNFVGGCSVNPYS------------------LAPAVQMRSVIPVFAA 320
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 166/276 (60%), Positives = 203/276 (73%), Gaps = 31/276 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESPS+C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN L+ RGPS++L ARVLDETG+YKNLLQETAHRAGLNLPVYTT+RSGPGHVP+F+
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVE+AGM+FTGE AKTKKQA+KNAA+ AWSAL+++ E++ EEQ+Q I+AR
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKL---------ESECNEEQEQVIIAR 171
Query: 181 VLSNFR-AKDDNRNNNARRRDQSQARRRVVCRSHRD----NCSAASSTSGNSSQY----- 230
VL++ R +K +N+ N+ R Q R +CR +CS ++ + S +
Sbjct: 172 VLASLRPSKSNNKQND---RQHGQQRSGSICRDSTPQTPISCSMQYQSTVDPSFFPEMAM 228
Query: 231 QQHWR--LLDMLMDSALAVPTQKQSSYVSLVPPPPP 264
Q W+ L L + LA+P V L P P P
Sbjct: 229 YQMWQQEQLAQLQNRLLALP-------VPLAPQPSP 257
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 370 ITPTSIRAK--SMYTGGFNPQRIAPAVQIRSVIPVCAAPPSPPITTPSSSSSSSNPPSTK 427
I P S R + M G P+ +APAVQIR+V+PVC+APP+ I PSSS P
Sbjct: 471 IPPYSFRPRPERMDFGRGPPRAMAPAVQIRTVVPVCSAPPARKI--PSSSQEGLPPYREN 528
Query: 428 EAAE 431
+ AE
Sbjct: 529 KNAE 532
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 166/278 (59%), Positives = 204/278 (73%), Gaps = 24/278 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESPS+C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN L+ RGPS++L ARVLDETG+YKNLLQETAHRAGLNLPVYTT+RSGPGHVP+F+
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKP--EEQDQAIV 178
CTVE+AGM+FTGE AKTKKQA+KNAA+ AWSAL+++ S ++ + EEQ+Q I+
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKLSQRGSPSSPSVESECNEEQEQVII 180
Query: 179 ARVLSNFR-AKDDNRNNNARRRDQSQARRRVVCRSHRD----NCSAASSTSGNSSQY--- 230
ARVL++ R +K +N+ N+ R Q R +CR +CS ++ + S +
Sbjct: 181 ARVLASLRPSKSNNKQND---RQHGQQRSGSICRDSTPQTPISCSMQYQSTVDPSFFPEM 237
Query: 231 --QQHWR--LLDMLMDSALAVPTQKQSSYVSLVPPPPP 264
Q W+ L L + LA+P V L P P P
Sbjct: 238 AMYQMWQQEQLAQLQNRLLALP-------VPLAPQPSP 268
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 370 ITPTSIRAK--SMYTGGFNPQRIAPAVQIRSVIPVCAAPPSPPITTPSSSSSSS 421
I P S R + M G P+ +APAVQIR+V+PVC+APP+ I PSS +S
Sbjct: 482 IPPYSFRPRPERMDFGRGPPRAMAPAVQIRTVVPVCSAPPARKIPRPSSKEMTS 535
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/196 (73%), Positives = 170/196 (86%), Gaps = 12/196 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN L++RGPSR+L ARVLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGHVP+F+
Sbjct: 61 AEVALNTLASRGPSRALAARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM----------PNLDSLTNKETDKP 170
CTVELAGM+FTGEPA+TKKQA+KNAA+AAWSALKR+ + + N++
Sbjct: 121 CTVELAGMSFTGEPARTKKQAQKNAAMAAWSALKRLVQHGSSSSSSLSSSLVENRKGS-- 178
Query: 171 EEQDQAIVARVLSNFR 186
EEQ+Q ++AR L++ +
Sbjct: 179 EEQEQVVIARFLASVQ 194
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 384 GFNPQRIAPAVQIRSVIPVCAAPP 407
G +P+ +APAV+IRSV+PVC+APP
Sbjct: 507 GVHPRFMAPAVRIRSVVPVCSAPP 530
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 176/223 (78%), Gaps = 19/223 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY IREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPSRSL A+VLDETGIYKNLLQETAHRAGL LPVYTTVRSGPGH PIFT
Sbjct: 61 AEVALNTLSKRGPSRSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM-----------PNLD------SLT 163
CTVELAGM+FTG+PAKTKKQA+KNAA+AAWSALK P L + +
Sbjct: 121 CTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALKHFKSYLVDGANAAPRLGSSSSPSAPS 180
Query: 164 NKETDKPEEQDQAIVARVLSNFRAKDDNRNN--NARRRDQSQA 204
E++K EEQ+ I+A L+ + ++N ++ N RRR Q ++
Sbjct: 181 LSESEKNEEQEPVILAHALAKLQRSEENWSSSQNGRRRGQQRS 223
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 143/208 (68%), Positives = 166/208 (79%), Gaps = 3/208 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGE FESP++C+TLR AEHAA
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A+VLDETGIYKNLLQETAHRAGL LPVYTT+RSGPGH P+FT
Sbjct: 74 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 133
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET---DKPEEQDQAI 177
CTVELAGM FTG P KTKKQA+KNAA+AAWS LK++P + ++ ++Q+Q I
Sbjct: 134 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 193
Query: 178 VARVLSNFRAKDDNRNNNARRRDQSQAR 205
VAR L++ + + + + QS R
Sbjct: 194 VARTLASLNQTNGGKTPQQKEKQQSSNR 221
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA--KTKKQAEK 143
G+YKN LQE A R+ NLP Y +R GP H P F TV G F PA T + AE
Sbjct: 13 GMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEH 71
Query: 144 NAAIAAWSALKRMPNLDSLTNKETDK 169
AA A + L + SL K D+
Sbjct: 72 AAAEVALNELSKRGPSSSLAAKVLDE 97
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 143/208 (68%), Positives = 166/208 (79%), Gaps = 3/208 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGE FESP++C+TLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A+VLDETGIYKNLLQETAHRAGL LPVYTT+RSGPGH P+FT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET---DKPEEQDQAI 177
CTVELAGM FTG P KTKKQA+KNAA+AAWS LK++P + ++ ++Q+Q I
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180
Query: 178 VARVLSNFRAKDDNRNNNARRRDQSQAR 205
VAR L++ + + + + QS R
Sbjct: 181 VARTLASLNQTNGGKTPQQKEKQQSSNR 208
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 143/208 (68%), Positives = 166/208 (79%), Gaps = 3/208 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGE FESP++C+TLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A+VLDETGIYKNLLQETAHRAGL LPVYTT+RSGPGH P+FT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET---DKPEEQDQAI 177
CTVELAGM FTG P KTKKQA+KNAA+AAWS LK++P + ++ ++Q+Q I
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180
Query: 178 VARVLSNFRAKDDNRNNNARRRDQSQAR 205
VAR L++ + + + + QS R
Sbjct: 181 VARTLASLNQTNGGKTPQQKEKQQSSNR 208
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 169/304 (55%), Positives = 201/304 (66%), Gaps = 34/304 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A+VLDETGIYKNLLQETAHRAGL LP YTT+RSGPGH P+FT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL-DSLTNKETDK-PEEQDQAIV 178
CTVELAG FTG P KTKKQA+KNAA+AAWS LK++P + ++ ++ D EEQ+Q IV
Sbjct: 121 CTVELAGRIFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEAASSSPLDHDDEEQEQVIV 180
Query: 179 ARVLSNFRAKDDNRNNNARRRDQSQAR---RR------VVCRSHRDNCSAASSTSGNSSQ 229
AR L + ++ ++ + + + QS RR V + R S+ S +
Sbjct: 181 ARTLESLNQTNEGKSAHQKEKQQSNNHPPPRRSHPKPYVSFQRSRLQNQTYSNVSPEQAM 240
Query: 230 YQQHWRLLDMLMDSALAVPTQKQSSYVSLVP-------PPPPRSTSKILPPITSLCPANI 282
Y HWR + PTQ Q + +VP P PP S PP
Sbjct: 241 Y--HWRQVQ---------PTQ-QKPHFPMVPVMGNTRFPSPPTMLSMYPPPPQ----GQF 284
Query: 283 PIPA 286
P+PA
Sbjct: 285 PVPA 288
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/208 (67%), Positives = 168/208 (80%), Gaps = 3/208 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE+FESP++C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS +L A+VLDETGIYKNLLQETAHRAGL LP+YTT+RSGPGH P+FT
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET---DKPEEQDQAI 177
CTVELAG FTG P KTKKQA+KNAA+AAWS LK++P + ++ EEQ+Q I
Sbjct: 121 CTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDLKQLPRIGEPSSSSCPADQDDEEQEQVI 180
Query: 178 VARVLSNFRAKDDNRNNNARRRDQSQAR 205
V R L++ + + + + + Q+ R
Sbjct: 181 VTRTLASLNQANIGKVPHQKEKQQTNNR 208
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 146/214 (68%), Positives = 174/214 (81%), Gaps = 6/214 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALNVLS GPS++L A+VLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH+P+F
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNK---ETDKPEEQDQAI 177
CTV++A M+FTGEPAKTKKQA+KNAA+AAWSALKR+ S T+ E+ +E +Q
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSAPLESGGNDELEQVT 180
Query: 178 VARVLSNFRAKDDNRNNNARRRDQSQARRRVVCR 211
VAR L++ + + N+ + +RD + CR
Sbjct: 181 VARYLASLQPPEANK---SAQRDGLLGQGSTPCR 211
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/209 (68%), Positives = 167/209 (79%), Gaps = 4/209 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+V FNGE FESP + +TLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A+VLDETGIYKNLLQETAHRAGL LP+YTT+RSGPGH P FT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD----SLTNKETDKPEEQDQA 176
CTVELAG FTG P KTKKQA+KNAA+AAWS LK++P + + ++ +D EE++QA
Sbjct: 121 CTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQLPLVGEGEAASSSSPSDHDEEKEQA 180
Query: 177 IVARVLSNFRAKDDNRNNNARRRDQSQAR 205
VAR L N K++ + + + + QS R
Sbjct: 181 TVARSLENLNQKNEGKTSYQKEKQQSNNR 209
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/196 (72%), Positives = 168/196 (85%), Gaps = 3/196 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGE+FESP++C TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALNVLS GPS++L A+VLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH+P+F
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNK---ETDKPEEQDQAI 177
CTV++A M+FTGEPAKTKKQA+KNAA+AAWSALKR+ S T+ E+ +E +Q
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSAPLESGGNDELEQVT 180
Query: 178 VARVLSNFRAKDDNRN 193
VAR L++ + + N++
Sbjct: 181 VARYLASLQPPEANKS 196
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/191 (71%), Positives = 166/191 (86%), Gaps = 6/191 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN L+ RGPSR+L ARVLDETG+YKNLLQETAHRAGLNLPVYTT+RSGPGH P F+
Sbjct: 61 AEVALNTLAKRGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKP------EEQD 174
CTVE+AGM+FTG+P++TKKQA+KNAA+AAWSAL+++ ++ + EEQ+
Sbjct: 121 CTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRKLSEHHLSSSTSSSFSLESKGNEEQE 180
Query: 175 QAIVARVLSNF 185
Q I+ARVL++
Sbjct: 181 QVIIARVLASL 191
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 140/208 (67%), Positives = 168/208 (80%), Gaps = 3/208 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE+FESP +C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS +L A+VLDETGIYKNLLQETAHRAGL LP+YTT+RSGPGH P+F
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET--DKPEE-QDQAI 177
CTVELAG FTG P KTKKQA+KNAA+AAWS LK++P + ++ D+ +E Q+Q +
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKLPRVGEPSSSSCPPDQDDEVQEQVV 180
Query: 178 VARVLSNFRAKDDNRNNNARRRDQSQAR 205
V R L++ + + + + + QS R
Sbjct: 181 VTRTLASLNQANSGKVPHQKEKQQSNNR 208
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/189 (73%), Positives = 160/189 (84%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP+YCTTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTGEPAK KKQAEKNAA+AAWS+LK++ + ++ ET+ +E +Q +AR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSETENNDELEQITIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/189 (73%), Positives = 160/189 (84%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP+YCTTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTGEPAK KKQAEKNAA+AAWS+LK++ + ++ ET+ +E +Q +AR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAASSSSETENNDELEQITIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/189 (73%), Positives = 160/189 (84%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP+YCTTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTGEPAK KKQAEKNAA+AAWS+LK++ + ++ ET+ +E +Q +AR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSETENNDELEQITIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/190 (72%), Positives = 158/190 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH P+FT
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTG+PAK KKQAEKNAA+AAWS+LK++ S + E + +E +Q I+AR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 VLSNFRAKDD 190
L N+R K++
Sbjct: 181 ALINYRIKEN 190
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 137/190 (72%), Positives = 158/190 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL +R+LDETG+YKNLLQE A R G LP YTT RSG GH P+FT
Sbjct: 61 AEVALNALSNRGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTG+PAK KKQAEKNAA+AAWS+LK++ S + E + +E +Q I+AR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 VLSNFRAKDD 190
L N+R K++
Sbjct: 181 ALINYRIKEN 190
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/191 (71%), Positives = 160/191 (83%), Gaps = 2/191 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y CIREGPDHAPRFKA+VNFNGE+FESP+YC TLRQAEHAA
Sbjct: 65 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 124
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS+SL AR+LDETG+ KNLLQETA RAG++LPVY T RSGPGH+P+FT
Sbjct: 125 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFT 184
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLT--NKETDKPEEQDQAIV 178
CTVE+A M+F+GE AKTKKQAEKNAA+AAWSA++++ N E + EEQ+Q +
Sbjct: 185 CTVEVANMSFSGEAAKTKKQAEKNAAMAAWSAIQQLANQGRGVPLATEGEVSEEQEQNTI 244
Query: 179 ARVLSNFRAKD 189
AR L+ K+
Sbjct: 245 ARALAQHYGKE 255
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 149/156 (95%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFK +VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN L+TRGPSR+L ARVLDETG+YKNLLQETAHRAGLNLPVY T+R+GPGHVP F
Sbjct: 61 AEVALNTLATRGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFY 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156
CTVE+AGM+FTG+PA+TKKQA+KNAAIAAWSAL+++
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRKL 156
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/189 (71%), Positives = 156/189 (82%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFE P YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH P+FT
Sbjct: 61 AEVALTSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTGEPAK KKQAEKNAA+AAWS+LK++ D+ ++ E + +E +Q +AR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEDASSSSEPENSDELEQITIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/191 (69%), Positives = 164/191 (85%), Gaps = 6/191 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN ++ RGPS +L ARVLDETG+YKNLLQETAHRAGLNLPVYTT+RSGPGH P F+
Sbjct: 61 AEVALNTIAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKP------EEQD 174
C+VE+AGM+FTG+P++TKKQA+KNAA+AAWSAL+++ ++ + EEQ+
Sbjct: 121 CSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRKLSEHHLSSSTSSSFSRESKANEEQE 180
Query: 175 QAIVARVLSNF 185
Q I+A VL++
Sbjct: 181 QVIIAGVLASL 191
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 343 SMLKTSLFDSTSQVGSSRFLGSLNPNPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPV 402
+M TS S Q +SR +P PTS R + P +APAV+IRSV+PV
Sbjct: 441 TMCPTSSVGSRPQHAASRLRTGTPRSPGIPTSERFGMIRAP--TPLFMAPAVRIRSVVPV 498
Query: 403 CAAPPSPPITTPSSSSSSSN-PPSTKEAAEVSAASG 437
C+APP + S S + P KE + S+ G
Sbjct: 499 CSAPPRRSMAEVSQSKEKEDLKPEDKEVSRTSSELG 534
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 128/162 (79%), Positives = 152/162 (93%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN + RGPSR+L ARVLDETG+YKNLLQETAHRAGLNLPVYTT+RSGPGHVP ++
Sbjct: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
CTVE+AGM+FTG+PA+TKKQA+KNAA+AAWSAL++ + ++
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAMAAWSALRKCEHFAAV 162
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 139/199 (69%), Positives = 161/199 (80%), Gaps = 2/199 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A++LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
VELAG+ FTGEPAK KKQAEKNAA+AAWS+LK++ + ++ E + +E +Q +AR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIAR 180
Query: 181 VLSNFRAKD--DNRNNNAR 197
L N+R K+ N NAR
Sbjct: 181 ALLNYRLKEKMSMSNPNAR 199
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/191 (72%), Positives = 159/191 (83%), Gaps = 2/191 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSC NLP+Y CIREGPDHAPRFKA+V+FNGEIFESP+YC TLRQAEHAA
Sbjct: 19 MYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAA 78
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS+SL AR+LDETG+ KNLLQETA RAG++LPVY+T RSGPGH+P+FT
Sbjct: 79 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFT 138
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKP--EEQDQAIV 178
CTVELA M F+GE AKTKKQAEKNAA+AAWSALK+ N + TD EEQ+Q +
Sbjct: 139 CTVELAKMTFSGEAAKTKKQAEKNAAMAAWSALKQFANQGRSVSLATDAEVSEEQEQNTI 198
Query: 179 ARVLSNFRAKD 189
A+ L+ K+
Sbjct: 199 AKALAQHFGKE 209
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/195 (69%), Positives = 158/195 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A++LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
VELAG+ FTGEPAK KKQAEKNAA+AAWSALK++ + ++ E + +E +Q +AR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDELEQITIAR 180
Query: 181 VLSNFRAKDDNRNNN 195
L N+R K+ +N
Sbjct: 181 ALLNYRLKEKMAMSN 195
>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 357
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/190 (74%), Positives = 159/190 (83%), Gaps = 2/190 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+V FNGE F+ PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS SLTARVLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAGM+F G+PAKTKK AEKNAA+AAWS+LK+MP ++ EEQ+ +VAR
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQMP--EARKEPGGGGGEEQEHVVVAR 178
Query: 181 VLSNFRAKDD 190
VL+ + +DD
Sbjct: 179 VLAALKPRDD 188
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/190 (74%), Positives = 159/190 (83%), Gaps = 2/190 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+V FNGE F+ PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS SLTARVLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAGM+F G+PAKTKK AEKNAA+AAWS+LK+MP ++ EEQ+ +VAR
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQMP--EARKEPGGGGGEEQEHVVVAR 178
Query: 181 VLSNFRAKDD 190
VL+ + +DD
Sbjct: 179 VLAALKPRDD 188
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS R PS SL AR+LDETG+YKNLLQE A R G LP Y T RSG GH+P+FT
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTGEPAK KKQAEKNAA+AAWS+LK++ + ++ E + +E +Q +AR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180
Query: 181 VLSNFRAKDDNRNNNA 196
L N+R K+ +N+
Sbjct: 181 ALLNYRLKEKISMSNS 196
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 135/195 (69%), Positives = 158/195 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFE+P YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AE ALN LS RGPS SL A++LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
VELAG+ FTGEPAK KKQAEKNAA+AAWSALK++ + ++ E + +E +Q +AR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDEVEQITIAR 180
Query: 181 VLSNFRAKDDNRNNN 195
L N+R K+ +N
Sbjct: 181 ALLNYRLKEKMTMSN 195
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 135/189 (71%), Positives = 156/189 (82%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS R PS SL AR+LDETG+YKNLLQE A R G LP Y T RSG GH+P+FT
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTGEPAK KKQAEKNAA+AAWS+LK++ + ++ E + +E +Q +AR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/190 (71%), Positives = 155/190 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFE P YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGP SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
VELAG+ FTGEPAK KKQAEKNAA+AAWSALK++ + ++ E + +E +Q +AR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180
Query: 181 VLSNFRAKDD 190
L N+R K+
Sbjct: 181 ALLNYRQKEK 190
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/190 (71%), Positives = 155/190 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFE P YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGP SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
VELAG+ FTGEPAK KKQAEKNAA+AAWSALK++ + ++ E + +E +Q +AR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180
Query: 181 VLSNFRAKDD 190
L N+R K+
Sbjct: 181 ALLNYRQKEK 190
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 140/190 (73%), Positives = 157/190 (82%), Gaps = 2/190 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+V FNGE F+ PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS S TARVLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSSSFTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAGM+F G+PAKTKK AEKNAA+AAWS+LK+MP ++ EEQ+ +VAR
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQMP--EARKEPGGGGGEEQEHVVVAR 178
Query: 181 VLSNFRAKDD 190
VL+ + DD
Sbjct: 179 VLAALKPWDD 188
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 130/159 (81%), Positives = 143/159 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE+FESP +C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS +L A+VLDETGIYKNLLQETAHRAGL LP+YTT+RSGPGH P+F
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
CTVELAG FTG P KTKKQA+KNAA+AAWS LK+ L
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKREYL 159
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 146/156 (93%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFK++VNFNGE FESP++ +TLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN L++RGPS++L A VLDETG+YKNLLQETAHRAGL LPVYTT+RSGPGHVP+F+
Sbjct: 61 AEVALNTLASRGPSKALIAGVLDETGVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156
C VELAGM+FTGE A+TKKQA+KNAA+AAWSALKR
Sbjct: 121 CNVELAGMSFTGESARTKKQAQKNAAMAAWSALKRF 156
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/190 (71%), Positives = 152/190 (80%), Gaps = 1/190 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+V FNGE F P+ CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LSTRGPS LTARVLDETG+YKNLLQETAHRAGL LP YTTVRSGPGH P+F
Sbjct: 61 AEVALARLSTRGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFA 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
+VELAG++F G+ A+TKKQAEKNAA+ AWSALK+MP EEQ+ +VAR
Sbjct: 121 SSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQMPEARKEPGNGCGG-EEQEHVVVAR 179
Query: 181 VLSNFRAKDD 190
VL+ + + D
Sbjct: 180 VLAALKQRCD 189
>gi|414589931|tpg|DAA40502.1| TPA: double-stranded RNA binding motif family protein [Zea mays]
Length = 354
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 159/277 (57%), Positives = 187/277 (67%), Gaps = 22/277 (7%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRF+A+V FNGE FE PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS +L ARVLDETG+YKNLLQETAHRAGL LP YTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG++F G+PA+TKKQAEKNAA+AAWS+LK+MP KE +EQ+ VAR
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQMPE----ARKEPGAGDEQEHVAVAR 176
Query: 181 VLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDML 240
L+ + +D A + H N S++S+ N S Y+ WR
Sbjct: 177 ALAALKPRDGGDGKAA-----------PPLQKHSSNGSSSSALP-NPSLYRHQWR--PRT 222
Query: 241 MDSALAVPTQKQSSYVSLVPPPPPRSTSKILPPITSL 277
A A P ++ + L PP PR ILPP+ L
Sbjct: 223 STPAQAQPLPPRTGALPLQPPAGPR----ILPPLHLL 255
>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
Length = 352
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/277 (57%), Positives = 187/277 (67%), Gaps = 24/277 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRF+A+V FNGE FE PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS +L ARVLDETG+YKNLLQETAHRAGL LP YTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG++F G+PA+TKKQAEKNAA+AAWS+LK+MP KE +EQ+ VAR
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQMPE----ARKEPGAGDEQEHVAVAR 176
Query: 181 VLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDML 240
L+ + +D A + H N S++S+ N S Y+ WR
Sbjct: 177 ALAALKPRDGGDGKAA-----------PPLQKHSSNGSSSSALP-NPSLYRHQWR----P 220
Query: 241 MDSALAVPTQKQSSYVSLVPPPPPRSTSKILPPITSL 277
S A P ++ + L PP PR ILPP+ L
Sbjct: 221 RTSTPAQPLPPRTGALPLQPPAGPR----ILPPLHLL 253
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 129/155 (83%), Positives = 140/155 (90%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+V FNGE F+ PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS SLTARVLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
TVELAGM+F G+PAKTKK AEKNAA+AAWS+LK+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 173/337 (51%), Positives = 211/337 (62%), Gaps = 32/337 (9%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE+FESP+Y +TLR AEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGP +SL AR+LDETG+YKNLLQETA RAG+ LP+YTTVRSGPGH+P+FT
Sbjct: 64 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 123
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD--SLTNKETDKPEEQDQAIV 178
CTV + GM FTGE AKTKKQAEKNAA+ AWS+LK+ S T E++ EEQ+Q V
Sbjct: 124 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQYAKQGGTSATLLESEVTEEQEQNFV 183
Query: 179 ARVLSNFRAKDDNRNNNARRRDQSQARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLD 238
AR L+ KD+ A++ S+ R + H S +S+ Q R +
Sbjct: 184 ARALARAHGKDERSVLLAQQSTPSRT-RLLPGGGHSGQYHPGSWLLDANSETSQSHRFMH 242
Query: 239 MLMDSALAVPTQKQSSYVSLVPP---PPPRSTSKILPPIT------SLCPANIP-----I 284
+ + SY SL P PP TS+ +P I P IP I
Sbjct: 243 SSQHHSNGMVLGNGHSYRSL--PRRMPPGAGTSRDVPGIVPSRSMAGNMPRVIPTQLRSI 300
Query: 285 PALAKLDEH-------HHQGDHEEDWLFG-----KQD 309
P + + D H HQ D E++WL G KQD
Sbjct: 301 PTVIRRDRHDISVPLEEHQRD-EDEWLRGGSSESKQD 336
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGE 133
G++KN LQE A R+ NLP Y+ +R GP H P F TV NF GE
Sbjct: 3 GMFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATV-----NFNGE 45
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/155 (80%), Positives = 139/155 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRF+A+V FNGE FE PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS +L ARVLDETG+YKNLLQETAHRAGL LP YTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
TVELAG++F G+PA+TKKQAEKNAA+AAWS+LK+
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 128/181 (70%), Positives = 142/181 (78%), Gaps = 27/181 (14%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y CIREGPDHAPRFKA+VNFNGE+FESP+YC TLRQAEHAA
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 61 AEVALNVLSTRGPSRSLTARVL---------------------------DETGIYKNLLQ 93
AEVALN LS RGPS+SL AR+L DETG+ KNLLQ
Sbjct: 290 AEVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGVCKNLLQ 349
Query: 94 ETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
ETA RAG++LPVY T RSGPGH+P+FTCTVE+A M F+GE AKTKKQAEKNAA+AAWSAL
Sbjct: 350 ETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSAL 409
Query: 154 K 154
K
Sbjct: 410 K 410
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 30 APRFKASV-NFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIY 88
APR + S G ES ++ + R+ E A + G SR+L G+Y
Sbjct: 172 APRCRVSAPEIGGWWSESRAFWRSGRRFELRGLGGAREEVERGGSSRALWCGERVVAGMY 231
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP------AKTKKQAE 142
KN LQE A R+ NLP Y +R GP H P F TV NF GE T +QAE
Sbjct: 232 KNQLQELAQRSCFNLPAYACIREGPDHAPRFKATV-----NFNGEVFESPNYCNTLRQAE 286
Query: 143 KNAAIAAWSALKR 155
AA A + L R
Sbjct: 287 HAAAEVALNTLSR 299
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/133 (93%), Positives = 129/133 (96%), Gaps = 2/133 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLP+Y CIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVL--DETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPI 118
AEVALNVLS+RGP+RSLTARVL DETGIYKNLLQETAHRAGLNLP YTTVRSGPGHVP+
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPV 120
Query: 119 FTCTVELAGMNFT 131
FTCTVELAGMNFT
Sbjct: 121 FTCTVELAGMNFT 133
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNA 145
++KN LQE A R+ NLP Y +R GP H P F +V G F T +QAE A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 146 AIAAWSALKRMPNLDSLTNKETDKPE 171
A A + L SLT + K E
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDE 86
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/191 (71%), Positives = 160/191 (83%), Gaps = 16/191 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE+FESP+YC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AE+ALNVLS RGPS+SL AR+LDETG++KNLLQETA RA + LP YTT RSGPGH+P+FT
Sbjct: 61 AELALNVLSRRGPSQSLAARILDETGVFKNLLQETAQRANVPLPTYTTTRSGPGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM------PNL---DSLTNKETDKPE 171
C VE+AGMNFTG+ KTKKQAEKNAA+AAW+ LK+ P+L D +T E
Sbjct: 121 CVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATLKQFAKKLAPPSLFYSDEMT-------E 173
Query: 172 EQDQAIVARVL 182
+Q+Q +ARVL
Sbjct: 174 DQEQISIARVL 184
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 134/189 (70%), Positives = 157/189 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA+VNFNGE FESP + TTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL L+ RGPS SL AR+LDETG+YKNLLQE A R G LP+YTT RSG GH+P+FT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAG+ FTG+PAK KKQAEKNAA AAWSALK++ + ++ E + +EQ+Q +AR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSALKQLVREEVNSSNEPENNDEQEQIRIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/189 (70%), Positives = 156/189 (82%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTC+REGPDHAPRFKA+VNFNGE FESP + TTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL L+ RGPS SL AR+LDETG+YKNLLQE A R G LP+YTT RSG GH+P+FT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAG+ F G+PAK KKQAEKNAA AAWSALK++ + ++ E + +EQ+Q +AR
Sbjct: 121 CTVELAGITFAGDPAKNKKQAEKNAASAAWSALKQLVREEVNSSNEPENIDEQEQIRIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/189 (70%), Positives = 157/189 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTC+REGPDHAPRFKA+VNFNGE FESP + +TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL L+ RGPS SL AR+LDETG+YKNLLQE A R G LP+YTT RSG GH+P+FT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAG+ FTG+ AK KKQAEKNAA AAWSALK++ + ++ ET+ +EQ+Q +AR
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSALKQLVREEVNSSNETENSDEQEQIRIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 132/189 (69%), Positives = 157/189 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA+VNFNGE FESP + TTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL L+ RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAG+ FTG+PAK KKQAEKNAA AAWS+L+++ ++ ++ E + +EQ+Q +AR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 116/155 (74%), Positives = 135/155 (87%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQR+CFNLP Y CIR+GPDHAPRF+A+VNFNGEIFESP+YC+TLRQAE A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVA+N LS RGPS SL A+ LD+TG+YKNLLQE AHRAGL+LPVYTT RSGP H+P+F
Sbjct: 61 AEVAVNTLSKRGPSGSLVAKDLDDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFK 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
C V++ G F G+PA TKKQAE+N A+AAWSALK+
Sbjct: 121 CIVDVFGTRFNGKPAATKKQAEQNTAMAAWSALKQ 155
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/160 (78%), Positives = 143/160 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE+FESP+Y +TLR AEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGP +SL AR+LDETG+YKNLLQETA RAG+ LP+YTTVRSGPGH+P+FT
Sbjct: 61 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD 160
CTV + GM FTGE AKTKKQAEKNAA+ AWS+LK+ D
Sbjct: 121 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQCKFFD 160
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/144 (82%), Positives = 127/144 (88%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPS C REGPDHAPRFKA+V FNGE F+ PS CTTLRQAEHAA
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS SLTARVLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH P+F+
Sbjct: 84 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 143
Query: 121 CTVELAGMNFTGEPAKTKKQAEKN 144
TVELAGM+F G+PAKTKK AEK
Sbjct: 144 STVELAGMSFAGDPAKTKKHAEKE 167
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 83 DETG--IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKK 139
DE G +YKN LQE A R+ +LP R GP H P F TV G F G T +
Sbjct: 18 DEGGGSMYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLR 77
Query: 140 QAEKNAAIAAWSALKRMPNLDSLTNKETDK 169
QAE AA A + L SLT + D+
Sbjct: 78 QAEHAAAEVALARLSLRGPSSSLTARVLDE 107
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 155/189 (82%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKASV FNGE+FESP + TTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPGFFTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL L+ RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAG+ FTG+ AK KKQAEKNAA AAW++LK++ ++ + E + +EQ+Q +AR
Sbjct: 121 CTVELAGIIFTGDHAKNKKQAEKNAASAAWASLKQLAREEANSTNEPENNDEQEQIRIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 154/189 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA+V FNGE FESP + TTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL L+ RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAG+ FTG+ AK KKQAEKNAA AAWS+LK++ ++ + E + +EQ+Q +AR
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQLAREEANSTNEPENNDEQEQIRIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/161 (73%), Positives = 132/161 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY IREGP+HAPRFKA++ FNGEIFE+P YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEV LN LS RGPS SL ++LDETG+YKNL+QE A R G LP Y T RSG GH+PIF
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFI 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDS 161
VEL G+ FTGEPAK KKQAEKNAA+AAWSALKR + S
Sbjct: 121 RIVELTGITFTGEPAKNKKQAEKNAAMAAWSALKRYFGMVS 161
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 113/174 (64%), Gaps = 7/174 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KNQLQ+LA R F+LPSY+ R+GP H P FKA V F E FESP + TLRQAEHAA
Sbjct: 266 MHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAEHAA 325
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A VAL L+ G S +DE+ +YKN LQE A + G+ P Y T RSGP H+PIF
Sbjct: 326 AAVALKSLTKEGFS-------IDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFK 378
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQD 174
TV+ AG F G+ A +KKQAEKNAA+AAWSA+K TN T K EQ+
Sbjct: 379 STVKFAGTTFAGKEANSKKQAEKNAAMAAWSAVKNDSPDSEDTNTGTKKELEQN 432
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 57/75 (76%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KN+LQE+AQ+ C +LP Y REGPDHAPRFKA+V +NG FESP++C T ++A++AA
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 61 AEVALNVLSTRGPSR 75
AE AL VL + R
Sbjct: 61 AEFALEVLLGKAEQR 75
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA--KTKKQAEKN 144
++KN LQE A + ++LP Y + R GP H P F TV G F PA KT K+A+
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFES-PAFCKTAKEAQNA 59
Query: 145 AAIAAWSALKRMPNLDSLTNKETDKPEEQD-----QAIVARVLSNF 185
AA A L+ L K +P++ + Q + LSNF
Sbjct: 60 AAEFA---------LEVLLGKAEQRPKQANGPLPVQTQLGVTLSNF 96
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 6/154 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN+LQ +Q+ LP YTC R+GP HA RF+ V +G+ +ES + TL+ AE+A
Sbjct: 203 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 262
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A+VAL L G A+ ++G+YKNLLQE A + GL LP Y+T +SG HVP+F
Sbjct: 263 AKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFV 316
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TV++ NF G+P++TKKQAE +AA A+ +K
Sbjct: 317 STVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIK 350
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+K +LQEL R + LP Y+ +++G DH PRF+A+V +G+ F SP+ + +QA++ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 61 AEVALNVLS 69
A++A + S
Sbjct: 61 AKLAFDFFS 69
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNA 145
++K LQE HR LP Y+ V+ G H P F TV + G F P+K+ KQA+ +A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 146 AIAAWSALKRMPNL 159
A A+ +P+L
Sbjct: 61 AKLAFDFFS-LPSL 73
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 6/154 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN+LQ +Q+ LP YTC R+GP HA RF+ V +G+ +ES + TL+ AE+A
Sbjct: 4 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A+VAL L G A+ ++G+YKNLLQE A + GL LP Y+T +SG HVP+F
Sbjct: 64 AKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFV 117
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TV++ NF G+P++TKKQAE +AA A+ +K
Sbjct: 118 STVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIK 151
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 74/82 (90%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYT ++EGPDHAPRFKA VNFNG+IF++P YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVL 82
AEV LN L+ RGPS SL A++L
Sbjct: 61 AEVTLNSLTHRGPSHSLAAKIL 82
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF-TGEPAKTKKQAEKNA 145
+YKN LQE A R+ NLP YT+++ GP H P F V G F T T +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 146 AIAAWSAL-KRMPNLDSLTNKETDKPEEQDQ 175
A ++L R P+ KP+E+++
Sbjct: 61 AEVTLNSLTHRGPSHSLAAKILMKKPQEEEE 91
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 98/161 (60%), Gaps = 8/161 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ AQ+ LP Y+ GP H RFK+ V + +ESP + TL+ AEHAA
Sbjct: 158 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++AL LS G D+ G+YKNLLQE A + G LPVY+T +SG H+P F
Sbjct: 218 AKLALMSLSPAGFQE-------DDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFL 270
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK-RMPNLD 160
TVE+ G F G+ AKTKK AE NAA AA++ LK R NL+
Sbjct: 271 STVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERRSNLN 311
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF-TGEPAKTKKQAEKNAAI 147
K LQE HR N P Y+T + GP H P F TV + G++F T PA++ K+A+ NAA
Sbjct: 3 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 62
Query: 148 AAWSAL 153
A L
Sbjct: 63 LAIQYL 68
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M K +LQEL R +N P Y+ ++GP H P F A+V+ G F + + ++A+ A
Sbjct: 1 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60
Query: 61 AEVALNVLSTRGP 73
A +A+ L+ P
Sbjct: 61 AGLAIQYLTDPKP 73
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 85/109 (77%)
Query: 81 VLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQ 140
+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FTCTVELAG+ FTG+PAK KKQ
Sbjct: 73 LLDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQ 132
Query: 141 AEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVARVLSNFRAKD 189
AEKNAA AAWS+L+++ ++ ++ E + +EQ+Q +AR L N+R K+
Sbjct: 133 AEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIARALLNYRLKE 181
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN LQE+AQR LPSYT R G H P F +V G F +QAE A
Sbjct: 79 VYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKNA 137
Query: 61 AEVALNVL 68
A A + L
Sbjct: 138 ASAAWSSL 145
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K+QLQ AQ+ F LP Y+C R GP H+ RFK V NG+ FES Y +TL +AEHAA
Sbjct: 87 LFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTFESLEYFSTLNKAEHAA 146
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A+ AL L G ++ +DE+G YKNLLQE A R G LP Y+T +SG HVP F
Sbjct: 147 AKAALMSLLPNGVEE-VSFLFMDESG-YKNLLQELAQREGCGLPTYSTNKSGEAHVPTFI 204
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
TVE+ G FTG+ AKTKKQAE +AA A++ALK+
Sbjct: 205 STVEIEGEIFTGQGAKTKKQAEMSAAKTAYTALKQ 239
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 72/130 (55%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK++LQEL Q+ + LP+Y R+G H PRF A+V N F SPS T ++A++ A
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++A S PS S + V D ++K+ LQ A + LPVY+ R GP H F
Sbjct: 61 AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFK 120
Query: 121 CTVELAGMNF 130
C V + G F
Sbjct: 121 CKVTVNGQTF 130
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ A + LP Y REGP HAPRF+ +V F G+ F+S + TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++A+ L+ + P A YKNLLQE A + LP Y T SGP H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TVE AG F+GE AKTKK AE +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ A + LP Y REGP HAPRF+ +V F G+ F+S + TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++A+ L+ + P A YKNLLQE A + LP Y T SGP H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TVE AG F+GE AKTKK AE +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ A + LP Y REGP HAPRF+ +V F G+ F+S + TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++A+ L+ + P A YKNLLQE A + LP Y T SGP H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TVE AG F+GE AKTKK AE +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 3/149 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
++AL L S + +V + YKNLLQE A + G +LPVY+T G VP+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
TV +F GEPA TKKQAE NAA A+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT-TLRQAEHA 59
MYK++LQEL Q+ + P YT GP HAP F A+V+ NG F +P + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
AA+ A + + YK+ LQ A + G LP Y T+R GPGH F
Sbjct: 61 AAKAAFD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 153
V + G F E T K+AE AA A +L
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 3/149 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
++AL L S + +V + YKNLLQE A + G +LPVY+T G VP+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
TV +F GEPA TKKQAE NAA A+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPS-YCTTLRQAEHA 59
MYK++LQEL Q+ + P YT GP HAP F A+V+ NG F +P + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
AA+ AL+ + YK+ LQ A + G LP Y T+R GPGH F
Sbjct: 61 AAKAALD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 153
V + G F E T K+AE AA A +L
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 3/149 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
++AL L S + +V + YKNLLQE A + G +LPVY+T G VP+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
TV +F GEPA TKKQAE NAA A+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT-TLRQAEHA 59
MYK++LQEL Q+ + P YT G HAP F A+V+ NG F +P + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
AA+ A + + YK+ LQ A + G LP Y T+R GPGH F
Sbjct: 61 AAKAAFD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 153
V + G F E T K+AE AA A +L
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 97/156 (62%), Gaps = 10/156 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++KNQLQ AQ+ F LP Y+C R GP HA RFK V NG+ +ES Y TL +AE AA
Sbjct: 4 LFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAELAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGI-YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A+ AL L + G ++E G YK+LLQE A R G LP Y T +SG HVP F
Sbjct: 64 AKAALMSLLSNG---------VEEDGFGYKSLLQELAQREGCGLPTYWTDKSGEAHVPTF 114
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
VE+ G FTG+ AKTKKQAE +AA A++AL++
Sbjct: 115 VSKVEIEGEIFTGQGAKTKKQAEMSAAKIAYTALQQ 150
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 97/163 (59%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK+QLQE AQ+S + +P Y I++G H PRF+ASV NG +ES L+ AEH+A
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A+ AL+ L+ S A TG+ KN+LQE A R G +LP+Y +GP H +F
Sbjct: 61 AKKALDSLTGGANGASTDASGSSMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFA 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLT 163
TVE+ G+ + G AK+KK+AE AA A A+K + + +
Sbjct: 121 ATVEIGGVLYKGGTAKSKKEAEVKAARTAILAIKELAGKECFS 163
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 88/157 (56%), Gaps = 24/157 (15%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ A + LP Y REGP HAPRF+ +V F G+ F+S + TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGI---YKNLLQETAHRAGLNLPVYTTVRSGPGHVP 117
A++A GI YKNLLQE A + LP Y T SGP H P
Sbjct: 64 AKIA---------------------GIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAP 102
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
FT TVE AG F+GE AKTKK AE +AA A+ ++K
Sbjct: 103 TFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 139
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 96/155 (61%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++KNQLQ AQ+ F P Y+C R GP HA RFK V NG+ +ES Y TL +AE+AA
Sbjct: 135 LFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYESREYFPTLSKAENAA 194
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A+ AL L G DE+G YKNLLQ+ A R G LP Y T +SG H P F
Sbjct: 195 AKAALMSLLPNGVEE-------DESG-YKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFI 246
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
TVE+ G+NFTG+ A+ KKQAE +AA A++A +R
Sbjct: 247 STVEIDGVNFTGKEARNKKQAEMSAAKIAYTARRR 281
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 48/178 (26%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK++LQ+L+Q+ + +P Y +EG +H+P F A+V + +F +P ++ ++A++AA
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 61 AEVALNVLS-------------------------TR-GPSRSLTARVLD--------ETG 86
A++A N S TR P +L + D E G
Sbjct: 61 AKLAHNYFSDHPRASSSSPLNVSADCSGGSAGENTRPSPGGNLELDLQDANRTPLSNEAG 120
Query: 87 --------------IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF 130
++KN LQ A + PVY+ R GP H F C V + G +
Sbjct: 121 AVAKTDESFGGILHLFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTY 178
>gi|224129268|ref|XP_002328932.1| predicted protein [Populus trichocarpa]
gi|222839362|gb|EEE77699.1| predicted protein [Populus trichocarpa]
Length = 234
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 127/229 (55%), Gaps = 42/229 (18%)
Query: 265 RSTSKILPPITSL-CPA----NIPIPALAK-------------LDEHHHQGDHEEDWLFG 306
R+TSKILPP + + P+ N PIP K L+EH EE+WL
Sbjct: 10 RTTSKILPPTSHIDNPSHFILNRPIPLQVKGKSQVQAPEIPVALEEHLKD---EEEWLGT 66
Query: 307 KQDAIIKKPFEKEDSSSIIVHG--TKSSIQKPFPQLDTSMLKTSLFDSTSQVGS----SR 360
K D +IKKP EKE +S+ SSI +PFP +T TSL D+TSQ S SR
Sbjct: 67 KSD-VIKKPIEKEGTSNSNPSSLYASSSIYRPFPFSNTGKPVTSLLDNTSQHESTHISSR 125
Query: 361 FLGSLNPNPITPTSIRAKS-------MYTGGFNPQRIAPAVQIRSVIPVCAAPPSPPITT 413
GS NP+P+ TSI S M+TGGFNP RIAPAVQIRSVIPVCAAPPS PI
Sbjct: 126 IFGSPNPSPMASTSIHTPSNTHIPRPMFTGGFNPHRIAPAVQIRSVIPVCAAPPS-PIRP 184
Query: 414 PSSSSSSSNP--PSTKEAAEVSAASGSKLLNNPSSTQQLNPEFNKKLQL 460
P S S+++ P P+T AEVS ++ + TQ + EF KLQL
Sbjct: 185 PQSPSATNAPPRPATTGVAEVSMFKKTES----NQTQLSSTEFKNKLQL 229
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YKNQLQE AQ+ LPSY I G AP FK+ V +G+ FESP YC T+++AE AAA
Sbjct: 94 YKNQLQEYAQKRGKLLPSYRPIHGGSLRAPLFKSEVTIDGQTFESPEYCRTMKEAETAAA 153
Query: 62 EVALNVL-STRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
+VAL L GP++ L + YKNLLQE + G LP Y T + F
Sbjct: 154 KVALMFLPQEAGPTQQLPLPSVS----YKNLLQEFVQKEGFPLPTYDTTLDVSNYSAAFI 209
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156
TVE+ G F GEP TKKQAE NAA A+ K +
Sbjct: 210 STVEIQGATFRGEPGNTKKQAEMNAAKIAFQHFKDI 245
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT-TLRQAEHA 59
MYK++LQEL Q+ + P Y REGP H P F+A+V NGE F SP ++++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGI-----YKNLLQETAHRAGLNLPVYTTVRSGPG 114
AA A LS A YKN LQE A + G LP Y + G
Sbjct: 61 AAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGSL 120
Query: 115 HVPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 153
P+F V + G F E +T K+AE AA A L
Sbjct: 121 RAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFL 160
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
+VAL L + T ++L + YKNLLQE + G LP+Y T + F
Sbjct: 155 KVALMSLPQEA---NPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156
TVE+ G+ F G+P TKKQAE NAA +A+ K +
Sbjct: 212 TVEIHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNI 246
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHA 59
MYK++LQEL Q+ + P Y REGP HAP F+A+V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALNVLSTRGPSRSLTARVL-----DETGI-YKNLLQETAHRAGLNLPVYTTVRSGP 113
AA A + L + A ET + YK+ LQ A + G LP Y + G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSALKRMPN 158
H P+F V + G F E T K+AE AA A +L + N
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEAN 166
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
+VAL L + T ++L + YKNLLQE + G LP+Y T + F
Sbjct: 155 KVALMSLPQEA---NPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156
TVE+ G+ F G+P TKKQAE NAA +A+ K +
Sbjct: 212 TVEIRGVTFHGKPGNTKKQAEMNAAKSAFEHFKNI 246
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHA 59
MYK++LQEL Q+ + P Y REGP HAP F+A+V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALNVLSTRGPSRSLTARVL-----DETGI-YKNLLQETAHRAGLNLPVYTTVRSGP 113
AA A + L + A ET + YK+ LQ A + G LP Y + G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSALKRMPN 158
H P+F V + G F E T K+AE AA A +L + N
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEAN 166
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
+VAL L + T ++L + YKNLLQE + G LP+Y T + F
Sbjct: 155 KVALMSLPQEA---NPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156
TVE+ G+ F G+P TKKQAE NAA +A+ K +
Sbjct: 212 TVEIHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNI 246
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHA 59
MYK++LQEL Q+ + P Y REGP HAP F+A+V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALNVLSTRGPSRSLTARVL-----DETGI-YKNLLQETAHRAGLNLPVYTTVRSGP 113
AA A + L + A ET + YK+ LQ A + G LP Y + G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSALKRMPN 158
H P+F V + G F E T K+AE AA A +L + N
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEAN 166
>gi|218196103|gb|EEC78530.1| hypothetical protein OsI_18477 [Oryza sativa Indica Group]
Length = 562
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLL 92
FKA+VNFNGE FESP++C+TLR AEHAAAEVALN LS RGPS SL A+VLDETGIYKNLL
Sbjct: 58 FKATVNFNGETFESPAFCSTLRLAEHAAAEVALNELSKRGPSSSLAAKVLDETGIYKNLL 117
Query: 93 QETAHRA 99
QETAHRA
Sbjct: 118 QETAHRA 124
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 18/154 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+ F+S + TL+ AEHAA
Sbjct: 4 VYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++AL L+ + P + A + LPVY T SGP H P F
Sbjct: 64 AKIALASLTPQSPEAKI------------------AQKENSMLPVYATATSGPSHSPTFI 105
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TVE AG FTG+ AKTKK AE +AA A+ ++K
Sbjct: 106 STVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSIK 139
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P F ++V N ++S + + AE +A
Sbjct: 15 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
AEVAL LS ++ + ETG+ KNLLQE A + +P+Y + GPG +F
Sbjct: 75 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDK 169
+CTVE+ G+ + G AKTKK+AE AA A A++ PN SL+ K ++
Sbjct: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPN--SLSEKSVNQ 182
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P F ++V N ++S + + AE +A
Sbjct: 8 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 67
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
AEVAL LS ++ + ETG+ KNLLQE A + +P+Y + GPG +F
Sbjct: 68 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 127
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDK 169
+CTVE+ G+ + G AKTKK+AE AA A A++ PN SL+ K ++
Sbjct: 128 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPN--SLSEKSVNQ 175
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K+QLQE AQ++ P Y +EGP H P F+++V N ++S + + AE +A
Sbjct: 16 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 75
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSG--PGHVPI 118
AEVAL L+ G + + ETG+ KNLLQE A + +P+Y + + PG P+
Sbjct: 76 AEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAPL 135
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
++CTV++ GM + G AKTK++AE AA A A++
Sbjct: 136 YSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQ 171
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P FK++V N ++S + + AE +A
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIF 119
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + PG F
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNK 165
+CTVE+ G+ + G A+TKK+AE AA A A++ N D + K
Sbjct: 135 SCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR--ANTDGVGEK 178
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P FK++V N ++S + + AE +A
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIF 119
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + PG F
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNK 165
+CTVE+ G+ + G A+TKK+AE AA A A++ N D + K
Sbjct: 135 SCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR--ANTDGVGEK 178
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK+QLQE AQ+ PSY ++EG H PRFK++V NG +ES TLR AEHAA
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A+ AL+ L + E+G+ KNLLQE A + G LP Y +VR G H +F+
Sbjct: 61 AKAALDFLQ----KTQFKVVPVHESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFS 116
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TVE+AG++++G AK+KK+AE AA A A++
Sbjct: 117 STVEIAGVSYSGGCAKSKKEAEIKAARTALLAIQ 150
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 6/157 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y ++EGP H P FK++V N +ES + + AE +A
Sbjct: 37 VFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAAEQSA 96
Query: 61 AEVALNVLSTRGP---SRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVP 117
AEVAL ++ P +RS+ A + ETG+ KNLLQE A + +P Y + G P
Sbjct: 97 AEVALMEIAMSAPVAETRSIPA--VQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP 154
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
F CTVE+ G+ + G A+TKK+AE AA A A++
Sbjct: 155 -FICTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQ 190
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 7/171 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHV 116
AEVAL L+ S LT V + E G+ KNLLQE A + +P+Y RS G
Sbjct: 75 AEVALQELA---KSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRA 131
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
P FTCTVE+ G+ +TG KTKK+AE +A A A++ +D N T
Sbjct: 132 PQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKMDLANNYST 182
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHV 116
AEVAL L+ S LT V + E G+ KNLLQE A + +P+Y RS G
Sbjct: 75 AEVALQELAK---SSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRA 131
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTN 164
P FTCTVE+ G+ +TG KTKK+AE +A A A++ +D N
Sbjct: 132 PQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANN 179
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHV 116
AEVAL L+ S LT V + E G+ KNLLQE A + +P+Y RS G
Sbjct: 75 AEVALQELAK---SSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRA 131
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTN 164
P FTCTVE+ G+ +TG KTKK+AE +A A A++ +D N
Sbjct: 132 PQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANN 179
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHV 116
AEVAL L+ S LT V + E G+ KNLLQE A + +P+Y RS G
Sbjct: 75 AEVALQELAK---SSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRA 131
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTN 164
P FTCTVE+ G+ +TG KTKK+AE +A A A++ +D N
Sbjct: 132 PQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANN 179
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 1/168 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHVPIF 119
AEVAL L+ + + E G+ KNLLQE + +P+Y RS G P F
Sbjct: 75 AEVALQELAKSSDLTQCVSLPVHEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
TCTVE+ G+ +TG KTKK+AE +A A A++ +D N T
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANNYST 182
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHVPIF 119
AEVAL L+ + + E G+ KNLLQE A + +P+Y RS G P F
Sbjct: 75 AEVALQGLAKSSDLTQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
TCTVE+ G+ +TG KTKK+AE ++ A A++ +D N T
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISSGRTALIAIQSESKIDLANNYST 182
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 7/171 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P +++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHV 116
AEVAL L+ S LT V + E G+ KNLLQE A + +P+Y RS G
Sbjct: 75 AEVALQELAK---SSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRA 131
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
P FTCTVE+ G+ +TG KTKK+AE +A A A++ +D N T
Sbjct: 132 PQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKMDLANNYST 182
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y I+EGP H P F+++V ++S + AE +A
Sbjct: 8 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAEQSA 67
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
AEVAL L+ G T++ + ETG+ KNLLQE A + +P+Y + PG +F
Sbjct: 68 AEVALVELAKAGQINESTSQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVF 127
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G AKTKK+AE AA A A++
Sbjct: 128 KCTVEIGGIRYIGASAKTKKEAEIKAARTALLAIQ 162
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y I+EGP H P F+++V ++S + AE +A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
AEVAL L+ G T++ ++ETG+ KNLLQE A + +P+Y + PG +F
Sbjct: 75 AEVALVELAKAGEINESTSQPVNETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G KTKK+AE AA A A++
Sbjct: 135 KCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQ 169
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHV 116
AEVAL L+ S LT V + E G+ KNLLQE A + +P+Y RS G
Sbjct: 75 AEVALQELA---KSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRA 131
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
P FTCTVE+ G+ +TG KTKK+AE +A A A++
Sbjct: 132 PQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y ++EGP H P FK++V N +ES + + AE +A
Sbjct: 761 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSA 820
Query: 61 AEVALNVLSTRGPSRSLTAR-VLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
AEVAL ++ P + + ETG+ KNLLQE A + +P Y + G P F
Sbjct: 821 AEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP-F 879
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
C+VE+ G+ + G A+TKK+AE AA A A++
Sbjct: 880 VCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQ 914
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 6/157 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQR P Y ++EGP H P FK++V N +ES + + AE +A
Sbjct: 37 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSA 96
Query: 61 AEVALNVLSTRGPS---RSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVP 117
AEVAL ++ P R++ A + ETG+ KNLLQE A + +P Y + G P
Sbjct: 97 AEVALMEIAMSAPVTEIRNMPA--VQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP 154
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
F C+VE+ G+ + G A+TKK+AE AA A A++
Sbjct: 155 -FVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQ 190
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVAL-NVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPI 118
AEVAL ++ + ++S+T V ETG+ KNLLQE A + +P+Y + PG +
Sbjct: 75 AEVALVELVKSNAVNQSITQPV-HETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
F+CTV++ G+ + G AKTKK+AE AA A A++
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V +G ++S + AE +A
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHVPIF 119
AEVAL LS + + E G+ KNLLQE A + +P+Y +S G P F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
TCTVE+ G+ +TG KTKK+AE +A A A++ +D N T
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANNYST 182
>gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
Length = 123
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 63/125 (50%), Gaps = 42/125 (33%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQL L SY C EGPDH PRF+A+V FN E FE PS CTTLRQAEHAA
Sbjct: 1 MYKNQL----------LTSYVCTPEGPDHTPRFRAAVTFNSETFEGPSGCTTLRQAEHAA 50
Query: 61 AEVALNVLSTRGPSRSLTARVL--------------------------------DETGIY 88
AEV L LS R PS SL +V DETG+Y
Sbjct: 51 AEVTLARLSLRAPSTSLATQVFVITTVIFLRVLCVLLLAAVDLDVEGETVHIAQDETGLY 110
Query: 89 KNLLQ 93
KNL Q
Sbjct: 111 KNLFQ 115
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y ++EGP H P FK++V +G ++S + + AE +A
Sbjct: 13 VFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSRKAAEQSA 72
Query: 61 AEVAL-NVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
AEVAL + + S T + ETG+ KNLLQE A + +P Y + R G P F
Sbjct: 73 AEVALMEIAKSLALPTSATIPAVQETGLCKNLLQEYAQKMNYAIPSYISHRQASGVAP-F 131
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TVE+ G+ + G A+TKK+AE AA A A++
Sbjct: 132 ISTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQ 166
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 79 ARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KT 137
A V++ ++K+ LQE A +AGL P Y T++ GP H P+F V + G+++ P +
Sbjct: 5 ASVVENCYVFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFS 64
Query: 138 KKQAEKNAAIAAWSALKR 155
+K AE++AA A + +
Sbjct: 65 RKAAEQSAAEVALMEIAK 82
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 76/155 (49%), Gaps = 39/155 (25%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++KNQLQ AQ+ F+LP Y+C R GP HA RFK NG+ +ES Y TL +AE
Sbjct: 176 LFKNQLQTYAQKRNFSLPVYSCERMGPPHAIRFKCKFTINGQTYESREYFPTLSKAEK-- 233
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R G P Y T +SG H P F
Sbjct: 234 -------------------------------------REGCGFPTYCTEKSGEAHAPTFI 256
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
TVE+ G++FTG+ A+TKKQAE +AA A++A +R
Sbjct: 257 STVEIDGVSFTGKEARTKKQAEMSAAKIAYTARRR 291
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK+ LQ + + + LP+Y ++G DH+P F A+V N F SPS ++ ++A+ A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 61 AEVALNVLS 69
A++A + S
Sbjct: 61 AKLAYDHFS 69
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVEL 125
+YK+ LQ H+ G LP Y + G H P+F+ TV +
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTV 39
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVAL-NVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPI 118
AEVAL ++ + ++S+T V ETG+ KNLLQE A + +P+Y + PG +
Sbjct: 75 AEVALVELIKSNLVNQSITQPV-HETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
F+CTV++ G+ + G AKTKK+AE AA A A++
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 16 VFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAEQSA 75
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIF 119
AEVAL L+ ++ + ETG+ KNLLQE A + +P+Y ++ PG +F
Sbjct: 76 AEVALMELAKCDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNESPGRGTLF 135
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+++ G AKTKK+AE AA A A++
Sbjct: 136 KCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQ 170
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVAL-NVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPI 118
AEVAL ++ + ++S+T V ETG+ KNLLQE A + +P+Y + PG +
Sbjct: 75 AEVALVELIKSNLVNQSITQPV-HETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
F+CTV++ G+ + G AKTKK+AE AA A A++
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V +G ++S + AE +A
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHVPIF 119
AEVAL LS + + E G+ KNLLQE A + +P+Y +S G P F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
TCTVE+ G+ +TG KTK++AE +A A A++ +D N T
Sbjct: 135 TCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESKIDLANNHST 182
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V +G ++S + AE +A
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP-GHVPIF 119
AEVAL LS + + E G+ KNLLQE A + +P+Y +S G P F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET 167
TCTVE+ G+ +TG KTK++AE +A A A++ +D N T
Sbjct: 135 TCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESKIDLANNHST 182
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N + S + + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y + G P F
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FI 152
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N + S + + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y + G P F
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V NG + S + AE +A
Sbjct: 15 VFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
AEVAL L+ ++ + ETG+ KNLLQE A + +P+Y R G F
Sbjct: 75 AEVALQELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TCTVE+ G+ +TG +TKK AE +A A A++
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ +LPSY IR GP HAP F+++V +G FESP T ++AE AAA
Sbjct: 114 YKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAAA 173
Query: 62 EVALNVLSTRG-PSRSL---TARVLDETGI---YKNLLQETAHRAGLNLPVYTTVRSGPG 114
VAL LS PS + +A + GI +K LQ A + G LP Y + GP
Sbjct: 174 RVALMSLSQEANPSEQMLVGSASCISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQEGPS 233
Query: 115 HVPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 153
H P+F TV + G F + +T K++E AA A +L
Sbjct: 234 HAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSL 273
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESP---SYCTTLRQAE 57
M+K QL +L Q+ + P Y EGP H RF+A+V NGE++ SP T ++A
Sbjct: 27 MFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTAKEAH 86
Query: 58 HAAAEVALNVLSTRGPSRSLTARVLDETGI-YKNLLQETAHRAGLNLPVYTTVRSGPGHV 116
+ AA+ A LS + ET + YK+ LQ A + +LP Y T+R+GP H
Sbjct: 87 NLAAKAAFERLS----ALPPPPPPQSETQLPYKSQLQVYAQKRHKDLPSYDTIRNGPPHA 142
Query: 117 PIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSALKRMPN 158
P+F TV + G F + T K+AE AA A +L + N
Sbjct: 143 PLFRSTVTIDGRTFESPQDYHTTKEAEFAAARVALMSLSQEAN 185
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K QLQ AQ+ LP Y +EGP HAP FK++V +G+ FESP YC T++++E+AAA
Sbjct: 207 HKLQLQIYAQKRGKQLPKYRRTQEGPSHAPLFKSTVTIDGQTFESPQYCQTIKESENAAA 266
Query: 62 EVALNVLSTRGPS 74
+AL L+ G S
Sbjct: 267 NLALMSLTQEGHS 279
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V +G + S + AE +A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
AEVAL L+ ++ + ETG+ KNLLQE A + +P+Y + G V F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TCTVE+ G+ +TG +TKK AE +A A A++
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 13/149 (8%)
Query: 7 QELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALN 66
Q A+++ + P +T EGP H R+KA V +G+ FESP+ T+++AE AAA+ +
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF-VG 171
Query: 67 VLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELA 126
+ P S K+LLQE + R G + P Y T + GP H+P F TVE+
Sbjct: 172 MFQKDEPCPS------------KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVE 219
Query: 127 GMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
G+ F G+ +K+K +AE++AA A+ LK
Sbjct: 220 GIGFHGKASKSKNKAEEDAAKIAYITLKE 248
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHA 59
M+K++LQEL R ++LP Y+ +GP H P FK SV NG F S + +A++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAEVALNVLST-----------RGPSRSLTAR------VLDETGIYKNLL--QETAHRAG 100
AA A ++ G + A VL ++ + K+ Q A +
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 101 LNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNAA 146
L+ PV+T GP H + V + G +F + T K+AE+ AA
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAA 167
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K+ LQEL++R F+ P+Y + GP H P F ++V G F + + +AE AA+
Sbjct: 182 KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGKA-SKSKNKAEEDAAK 240
Query: 63 VALNVLSTRG 72
+A L G
Sbjct: 241 IAYITLKECG 250
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKN+LQE Q+S LP Y + EGP H PRF+++V +G + S + AE
Sbjct: 139 MYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDV 198
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A +AL + R +L +T K++L E A + P Y TV+S PG +P+F
Sbjct: 199 ANLALESILKRVKDEGC-PLLLGDTVFCKSILNEFAVKVNREKPTYNTVQS-PGLLPVFI 256
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
T+ G+++TG+ + KK+AE+ AA A +L
Sbjct: 257 STLVFDGVSYTGDAGRNKKEAEQLAARAVILSL 289
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 74 SRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGE 133
S+ L + L + +YKN LQE ++ L LPVY T+ GP H+P F TV + G + +
Sbjct: 126 SKKLVKKGLPDNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQ 185
Query: 134 PAKT---KKQAEKNAA-IAAWSALKRM 156
KT +K AE++ A +A S LKR+
Sbjct: 186 --KTFLHRKAAEQDVANLALESILKRV 210
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
Query: 121 CTVEL-AGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ + G A+TKK AE AA A A++
Sbjct: 151 CTVEIWWEYKYIGAAARTKKDAEIKAARTALLAIQ 185
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKN+LQE +S N P Y I EG DH+P+F+++V + S S + + AEH A
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 61 AEVALNVL--STRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHV-P 117
A +AL + TR SL ++ + K+++ E A + + P Y T + G V P
Sbjct: 61 ARLALESILKRTRDEGLSLVNQI---SPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLP 117
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
IF ++ G ++TG+PA+TKK+AE++AA AA
Sbjct: 118 IFITSLVFNGTSYTGDPARTKKEAEQSAAKAA 149
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKN+LQE QR LP Y + EG H P+F+++V +GE + S + + ++AE
Sbjct: 13 MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A++AL ++ + + E + K++L E A + L +P Y TV+ G G PIF
Sbjct: 73 AKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQG-GLFPIF 131
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
+ G+ + G+ +TKK+AE+ AA AA +L R
Sbjct: 132 VSSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSLLR 167
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 14/165 (8%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K Q Q A ++ + P +T EGP R+ A+V +G+ F+SP+ T ++AE AA +
Sbjct: 147 KLQHQNYASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAALQ 206
Query: 63 VALNVLSTRG------------PSRSLTAR-VLDETGIYKNLLQETAHRAGLNLPVYTTV 109
+ +++ R P +L R + +ET K+LLQE R ++P Y +
Sbjct: 207 I-VDMFQARSALAFKPCQTFEKPRSALNNRHMTNETCASKSLLQELTQRRYCSIPTYKST 265
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
R+GP H+P F TVE+ G+ F G+ + +KK+AE +AA A+ ALK
Sbjct: 266 RTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKALK 310
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHA 59
MYK++LQE R ++LP Y+ I +GP H P FK SV NG F S + ++A +
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 60 AAEVALNVLST------------------------RGPSRSLTARVLDETGIYKNLL-QE 94
AA AL S + P S +L +T L Q
Sbjct: 93 AAMKALLNFSYPSSSSSMPTNEYGSKEKVGAAKPQKCPVPSQFPDILSDTDRLNKLQHQN 152
Query: 95 TAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
A + L+ PV+T GP + TV + G +F + T+K+AE+ A
Sbjct: 153 YASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAA 204
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%)
Query: 72 GPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFT 131
GPS + + D+ G+YKNLLQE A + G LPVY+T +SG H+P F TVE+ G F
Sbjct: 207 GPSHNCRFKSKDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFV 266
Query: 132 GEPAKTKKQAEKNAAIAAWSALK 154
G+ AKTKK AE NAA AA++ LK
Sbjct: 267 GQKAKTKKLAEMNAAKAAYTHLK 289
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF-TGEPAKTKKQAE 142
E + K LQE HR N P Y+T + GP H P F TV + G++F T PA++ K+A+
Sbjct: 7 EREMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQ 66
Query: 143 KNAAIAAWSAL 153
NAA A L
Sbjct: 67 SNAAGLAIQYL 77
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN LQE+A++ + LP Y+ + G H P F ++V GE F T + AE A
Sbjct: 222 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQK-AKTKKLAEMNA 280
Query: 61 AEVALNVLSTR 71
A+ A L R
Sbjct: 281 AKAAYTHLKER 291
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M K +LQEL R +N P Y+ ++GP H P F A+V+ G F + + ++A+ A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AEVALNVLS 69
A +A+ L+
Sbjct: 70 AGLAIQYLT 78
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KN+LQE QRS LP Y + EG HAP+F+++V +G + SP+ + + AE
Sbjct: 22 MHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A +AL +S + + ++T K++L E A + L P YTTV+ G +P+F
Sbjct: 82 ARLALEFISKKIKDEG-CPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPE-GLLPVFV 139
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
++ G+ +TG+ + KK+AE+ AA
Sbjct: 140 SSLVFNGVTYTGDAGRNKKEAEQLAA 165
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 82 LDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKKQ 140
L E ++KN LQE R+ + LP+Y TV G H P F TV + G +T +K
Sbjct: 17 LPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKA 76
Query: 141 AEKNAAIAAWSALKR 155
AE++ A A + +
Sbjct: 77 AEQDVARLALEFISK 91
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 82/163 (50%), Gaps = 30/163 (18%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IR G AP FK+ V +G+ FESP YC T+++AE AA
Sbjct: 93 YKSQLQIYAQKRGKLLPSYRLIRVGSLGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAA 152
Query: 62 EVALNVL-STRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
+VAL L P++ L GL++ Y+ F
Sbjct: 153 KVALMSLPQEANPTQQLLV--------------------GLDVSNYSAG---------FV 183
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLT 163
TVE+ G+ F G+ TKKQAE NAA +A+ LK L SL+
Sbjct: 184 STVEIQGVTFHGKRGNTKKQAEMNAAKSAFEHLKTDAGLVSLS 226
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHA 59
MYK++LQEL Q+ + Y REGP HAP F A+V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALNVL---STRGPSRSLTARVLDETGI-YKNLLQETAHRAGLNLPVYTTVRSGPGH 115
A A + L + + A ET + YK+ LQ A + G LP Y +R G
Sbjct: 61 TAMAAFDNLIPLPAVALAPAAPAPPPSETQLPYKSQLQIYAQKRGKLLPSYRLIRVGSLG 120
Query: 116 VPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSALKRMPN 158
P+F V + G F E T K+AE AA A +L + N
Sbjct: 121 APLFKSEVTIDGQTFESPEYCHTIKEAETVAAKVALMSLPQEAN 164
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 82 LDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQA 141
D+ G+YKNLLQE A + G LPVY+T +SG H+P F TVE+ G F G+ AKTKK A
Sbjct: 233 FDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLA 292
Query: 142 EKNAAIAAWSALK-RMPNLD 160
E NAA AA++ LK R NL+
Sbjct: 293 EMNAAKAAYTHLKERRSNLN 312
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF-TGEPAKTKKQAE 142
E + K LQE HR N P Y+T + GP H P F TV + G++F T PA++ K+A+
Sbjct: 7 EREMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQ 66
Query: 143 KNAAIAAWSAL 153
NAA A L
Sbjct: 67 SNAAGLAIQYL 77
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN LQE+A++ + LP Y+ + G H P F ++V GE F T + AE A
Sbjct: 238 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQK-AKTKKLAEMNA 296
Query: 61 AEVALNVLSTR 71
A+ A L R
Sbjct: 297 AKAAYTHLKER 307
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M K +LQEL R +N P Y+ ++GP H P F A+V+ G F + + ++A+ A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AEVALNVLSTRGP 73
A +A+ L+ P
Sbjct: 70 AGLAIQYLTDPKP 82
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K QL AQ+ P Y I+EGP HAPRF A V +G+ F P + AAA
Sbjct: 36 FKTQLSVYAQKLSKVPPLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 95
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
L P + T L YKN +QE A + G++LPVY TV + + +
Sbjct: 96 AEVALDLLPPIPPQEYTIPSLS----YKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKS 151
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETD 168
+V++ G F GEP +KKQAE NAA A+ L +P L+ N+ D
Sbjct: 152 SVQIKGEIFEGEPGTSKKQAEMNAAKIAYHHLA-LPELEGDDNERLD 197
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 9/152 (5%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K LQ A+++ + P +T E +KA+V + + FESP++ ++++AE AAA+
Sbjct: 124 KKHLQNYARKNNLDPPVFTIKTERL----HYKATVVIDEKSFESPTFFNSIKEAEQAAAK 179
Query: 63 VALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCT 122
+AL L S+ DE+ K+LL E R G + P YTT+ SG H+ + T
Sbjct: 180 IALRELPI-----SVDLFQKDESCPSKSLLLELTQREGYSKPTYTTIESGSLHMRTYFST 234
Query: 123 VELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
VE+ G+ F G+ +++KKQA+ +AA A+ ALK
Sbjct: 235 VEVEGLKFHGKASRSKKQADIDAAKIAYIALK 266
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+K +LQ+L + ++LP YT +GP H P F ASV+ NG F S + ++A++ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGI 87
A A ++ P R++ G
Sbjct: 61 AMKAFRNFTS--PLSEFAIRLIRRDGF 85
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K LQ+ H+ +LP YT GP H P F +V + G+ F A + K+A+ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 146 AIAAW 150
A+ A+
Sbjct: 61 AMKAF 65
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+K +LQE Q++ F LP Y + EG DH PRFK +V NG ++SP + A++AA
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AE A+ L +G + +L + KN+L++ A + + P Y + G H P FT
Sbjct: 61 AEAAVKKLVNQG-LLPIEEVILPKKP--KNVLEDIALKKNMPPPSYKFSKEGEAHCPTFT 117
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK-RMPNLDSLTNKETDKPEEQ 173
VE+ G + G+PA +KK A AA A A+ +S+ N ++ P E+
Sbjct: 118 AIVEINGAFYAGDPANSKKDATNKAACKAIRAIDPHYFQAESIINNGSEHPTEE 171
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 51/170 (30%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+ LQ A+ +LP+Y REGP HAP FKA+
Sbjct: 161 YKSHLQNYARWKNCDLPTYYNTREGPSHAPCFKAT------------------------- 195
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
D++G YKN LQE A R L++PVY ++SG H+P F
Sbjct: 196 ---------------------DDSGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFFS 234
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL-KRMPNLDSLTNKETDKP 170
VE+ G F G+ K+KK+AE +A AA++ L +R N N E+D P
Sbjct: 235 YVEIEGEKFYGKAGKSKKEAELKSARAAYTVLMERALN----RNAESDPP 280
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M K +LQE+ + + LP Y+ +++GPDH P FKASV NG F S + C + + A + A
Sbjct: 1 MDKTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDA 60
Query: 61 AEVAL 65
A++A
Sbjct: 61 AKMAF 65
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YKN LQELAQR ++P Y I+ G H P F + V GE F + + ++AE +
Sbjct: 200 FYKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGEKFYGKA-GKSKKEAELKS 258
Query: 61 AEVALNVLSTRGPSR 75
A A VL R +R
Sbjct: 259 ARAAYTVLMERALNR 273
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF-TGEPAKTKKQAEKNAAI 147
K LQE H+ LP Y+ ++ GP H P F +V + G++F + K+ K A +AA
Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAK 62
Query: 148 AAW 150
A+
Sbjct: 63 MAF 65
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ ++P Y IR GP HA FK +V +G+ FESP T+++AE AAA
Sbjct: 89 YKSQLQIYAQKRRKDIPFYHSIRSGPPHATLFKTTVTIDGQTFESPQEYHTIKEAEFAAA 148
Query: 62 EVALNVLSTRG-PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
VAL L P + L L +T + Q+ A + G L VY H I
Sbjct: 149 RVALMSLPQEANPPQQL----LVQTISHNRARQDLAEKEGSPLDVYNATLDDSNHFSISK 204
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD 160
VE G +F P TKKQ+E IA A + +LD
Sbjct: 205 EKVETQGRSFQAGPGHTKKQSE---MIATELAFQHSEDLD 241
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 24/196 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESP---SYCTTLRQAE 57
M+K++L EL + + P+YT EGP H P+F+A+V NG F SP ++ TT ++A+
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPTTAKEAQ 60
Query: 58 HAAAEVALNVLST--RGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGH 115
AA+ A LS+ P +D YK+ LQ A + ++P Y ++RSGP H
Sbjct: 61 SLAAKAAFEHLSSLPPPPPPPQPGTQVD----YKSQLQIYAQKRRKDIPFYHSIRSGPPH 116
Query: 116 VPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQD 174
+F TV + G F + T K+AE AA A +L +E + P
Sbjct: 117 ATLFKTTVTIDGQTFESPQEYHTIKEAEFAAARVALMSLP----------QEANPP---- 162
Query: 175 QAIVARVLSNFRAKDD 190
Q ++ + +S+ RA+ D
Sbjct: 163 QQLLVQTISHNRARQD 178
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 81 VLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQ 140
++DE YKNLLQE A + G LP Y+TV G H P F TVE+ G FTG+ +TKKQ
Sbjct: 1 MIDEFA-YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQ 59
Query: 141 AEKNAAIAAWSALKRMPNLDS----LTNKETDKP-----EEQDQAIVARVLSNFRAKDDN 191
AE NAA A+ ALK+ + S L + + +P Q+++A LSN + +
Sbjct: 60 AEFNAAKVAYKALKQRNSKQSSTVLLPSNTSHQPVGSCSGNSSQSLMASSLSNLKQRPIT 119
Query: 192 RNNNARRRDQS 202
N+R+ QS
Sbjct: 120 SLGNSRQSAQS 130
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YKN LQELAQ+ + LPSY+ + G H P F ++V GE F + T +QAE AA
Sbjct: 7 YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFF-TGQQTRTKKQAEFNAA 65
Query: 62 EVALNVLSTRGPSRSLT 78
+VA L R +S T
Sbjct: 66 KVAYKALKQRNSKQSST 82
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K QL AQ+ P Y I+EGP HAPRF A V +G+ F P + AAA
Sbjct: 81 FKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 140
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
L P + T L YKN +QE A + G+ LPVY TV + + +
Sbjct: 141 AEVALDLLPPIPPQESTIPSLS----YKNFIQEIAQKEGILLPVYNTVPTNKEYSTAYKS 196
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETD 168
+V++ F GEP +KKQAE NAA A+ L + LD N+ D
Sbjct: 197 SVQIKCEIFEGEPRTSKKQAEMNAAKIAYHHLALL-ELDGDDNERPD 242
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK++L L + P + EGP H+P F A+V N + F C + +
Sbjct: 1 MYKSELHALCSKKHCPKPEFVHTCEGPVHSPVFTATVTLNEKKF-----CAG--EGTPSK 53
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
EV S + +++ + +K L A + G P+Y ++ GP H P F
Sbjct: 54 KEVDNLAARAALLSLADSSKPFESKTDFKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFN 113
Query: 121 CTVELAGMNFTGEP 134
V + G F G P
Sbjct: 114 AEVTIDGQTF-GRP 126
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK +LQEL + ++LP Y+ + G DH P F A+V NG F S S + + A++ A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++A + S S SL V + +YKNLLQ A + GL LP+Y+ R GP H +F
Sbjct: 61 AKLAFDHFS----SVSLPPDV--QQHLYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFK 114
Query: 121 CTVELAGMNF 130
C V + G ++
Sbjct: 115 CKVTIDGKSY 124
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN LQ AQ+ LP Y+C R+GP HA FK V +G+ +E + T+ +AEHAA
Sbjct: 81 LYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTIDGKSYECLDFFPTVSKAEHAA 140
Query: 61 AEVALNVLSTRG 72
A+ AL L+ G
Sbjct: 141 AKAALTSLAPDG 152
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
distachyon]
Length = 281
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YKN+LQELAQR+ LP Y ++G H P F+++V G+ F S ++ AE AA
Sbjct: 30 YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIY-------KNLLQETAHRAGLNLPVYTTVR-SGP 113
VA +L + A V D G+ K++L E A + P Y+ R G
Sbjct: 90 RVAYEILVAK--IMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGV 147
Query: 114 GHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ +F +V G +TGE A +KK AE+ AA AA ++
Sbjct: 148 SPISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSI 187
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 19/156 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFES-PSYCTTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F+++V +G + S P +
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGF------FNRK 68
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPI 118
AAE++ V ++ + ETG+ KNLLQE A + +P+Y + G V
Sbjct: 69 AAELSQCV-----------SQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 117
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
FTCTVE+ G+ +TG +TKK AE +A A A++
Sbjct: 118 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 153
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN L E Q++ +P Y I EG P+++++V + + SP+ R AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A VA +S + + + ++ + K++L E + GL P+YTT + G V F
Sbjct: 137 ARVAFEYISKKTKDDAFLL-LREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFFQ 194
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
T+ G+ +T + +TKK+AE+ AA AA +L
Sbjct: 195 STLVFDGVVYTSDLGRTKKEAEQLAARAAILSL 227
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YKN L E Q++ +P Y I EG P+++++V + + SP+ R AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A VA +S + + + ++ + K++L E + GL P+YTT + G V F
Sbjct: 137 ARVAFEYISKKTKDDAFLL-LREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFFQ 194
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
T+ G+ +T + +TKK+AE+ AA AA +L
Sbjct: 195 STLVFDGVVYTSDLGRTKKEAEQLAARAAILSL 227
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KN+LQ A+R+ P Y EG H P+F+ +V G+ F S ++AE A
Sbjct: 47 MHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDA 106
Query: 61 AEVALNVLSTRGPSRSLTA-RVLDETGIY-KNLLQETAHRAGLNLPVYTTVR-SGPGHVP 117
A +A +LS G A ++D+ ++ K++L E A + P Y+ V P +
Sbjct: 107 ARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYIEKP--LT 164
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+F V G ++TGE A+ KK AE+NAA A ++
Sbjct: 165 LFAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSI 200
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHAA 60
YK++LQE Q++ LP Y +G H +FK++V +GE F S ++C ++ AE A
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS-TFCHRRVKDAEQDA 97
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGHV 116
A+VA + L R + + V +D+ ++ K++L E + + P Y+ ++ G V
Sbjct: 98 AKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKT-EGSV 156
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ +V AG +TG A+ KK AE+ AA AA +L
Sbjct: 157 TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHAA 60
YK++LQE Q++ LP Y +G H +FK++V +GE F S ++C ++ AE A
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS-TFCHRRVKDAEQDA 95
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGHV 116
A+VA + L R + + V +D+ ++ K++L E + + P Y+ ++ G V
Sbjct: 96 AKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKT-EGSV 154
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ +V AG +TG A+ KK AE+ AA AA +L
Sbjct: 155 TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 191
>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
Length = 357
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KN L + A +S P + EG AP +++SV +G +F S + AE
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A AL L+ + + + ++ E + K +L E A + + LP Y +V +P F
Sbjct: 87 ARFALEYLTKKVKDEAYS--IMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKE-VIPYF 143
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
CT++L G ++TG+ A+ KK A + AA AA
Sbjct: 144 VCTLDLNGTSYTGDAARRKKDAVELAARAA 173
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KN+LQ A+R+ P Y EG H P+F +V + F S + ++AE A
Sbjct: 58 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 117
Query: 61 AEVALNVLSTRGPSRSLTA-RVLDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGH-VP 117
A VA +L+T S A ++D+ ++ K++L E A + LP Y+ V +
Sbjct: 118 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 177
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+F V G + GE A KK AE+NAA
Sbjct: 178 LFAAIVVFDGNAYHGESAPNKKDAEQNAA 206
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+KN+LQ A+R+ P Y EG H P+F +V + F S + ++AE A
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 61 AEVALNVLSTRGPSRSLTA-RVLDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGH-VP 117
A VA +L+T S A ++D+ ++ K++L E A + LP Y+ V +
Sbjct: 61 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 120
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+F V G + GE A KK AE+NAA
Sbjct: 121 LFAAIVVFDGNAYHGESAPNKKDAEQNAA 149
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 27/149 (18%)
Query: 7 QELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALN 66
Q A+++ + P +T EGP H R+KA V +G+ FESP+ T+++AE AAA+ +
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF-VG 171
Query: 67 VLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELA 126
+ P S K+LLQE + R G + P Y T ++
Sbjct: 172 MFQKDEPCPS------------KSLLQELSEREGFSKPTYK--------------TTQIE 205
Query: 127 GMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
G+ F G+ +K+K +AE++AA A+ LK
Sbjct: 206 GIGFHGKASKSKNKAEEDAAKIAYITLKE 234
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHA 59
M+K++LQEL R ++LP Y+ +GP H P FK SV NG F S + +A++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAEVALNVLST-----------RGPSRSLTAR------VLDETGIYKNLL--QETAHRAG 100
AA A ++ G + A VL ++ + K+ Q A +
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 101 LNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNAA 146
L+ PV+T GP H + V + G +F + T K+AE+ AA
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAA 167
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
M+K +LQEL R + LP Y+ +++G DH PRF+A+V +G+ F SP+ + +QA++ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 61 AEVALNVLS 69
A++A + S
Sbjct: 61 AKLAFDFFS 69
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNA 145
++K LQE HR LP Y+ V+ G H P F TV + G F P+K+ KQA+ +A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 146 AIAAWSALKRMPNL 159
A A+ +P+L
Sbjct: 61 AKLAFDFFS-LPSL 73
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
ET K+LLQE R ++P Y + R+GP H+P F TVE+ G+ F G+ + +KK+AE
Sbjct: 1 ETCASKSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEY 60
Query: 144 NAAIAAWSALK 154
+AA A+ ALK
Sbjct: 61 DAAKIAYKALK 71
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K+ LQEL QR ++P+Y R GP H P F ++V G F + ++ ++AE+ AA+
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKA-SSSKKEAEYDAAK 64
Query: 63 VALNVLSTRG 72
+A L G
Sbjct: 65 IAYKALKDGG 74
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 82 LDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQA 141
+ ETG+ KNLLQE A + +P Y +S G P F CTVE+ G+ + G A+TKK A
Sbjct: 470 VQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDA 528
Query: 142 EKNAAIAAWSALK 154
E AA A A++
Sbjct: 529 EIKAARTALLAIQ 541
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVAL 65
AEVAL
Sbjct: 93 AEVAL 97
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A + GL P Y T + GP H P+F TV + ++ P +K AE++A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 146 A-IAAWSALKRMP 157
A +A +K +P
Sbjct: 93 AEVALMEIVKSIP 105
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 82 LDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQA 141
+ ETG+ KNLLQE A + +P Y +S G P F CTVE+ G+ + G A+TKK A
Sbjct: 470 VQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDA 528
Query: 142 EKNAAIAAWSALK 154
E AA A A++
Sbjct: 529 EIKAARTALLAIQ 541
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVAL 65
AEVAL
Sbjct: 93 AEVAL 97
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A +AGL P Y T + GP H P+F TV + ++ P +K AE++A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 146 A-IAAWSALKRMP 157
A +A +K +P
Sbjct: 93 AEVALMEIVKSIP 105
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 82 LDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQA 141
+ ETG+ KNLLQE A + +P Y +S G P F CTVE+ G+ + G A+TKK A
Sbjct: 1699 VQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDA 1757
Query: 142 EKNAAIAAWSALK 154
E AA A A++
Sbjct: 1758 EIKAARTALLAIQ 1770
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 1268 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 1327
Query: 61 AEVAL 65
AEVAL
Sbjct: 1328 AEVAL 1332
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AE+ L R + + A ++ ++K+ LQE A + GL P Y T + GP H P+F
Sbjct: 1246 AEIVLG----RNSNEDILAVGVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFK 1301
Query: 121 CTVELAGMNFTGEPA-KTKKQAEKNAA-IAAWSALKRMP 157
TV + ++ P +K AE++AA +A +K +P
Sbjct: 1302 STVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIP 1340
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
ETG+ KNLLQE A + +P Y + G P F CTVE+ G+ + G A+TKK AE
Sbjct: 467 ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAEI 525
Query: 144 NAAIAAWSALK 154
AA A A++
Sbjct: 526 KAARTALLAIQ 536
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N + S + + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIY----KNLLQETAHR 98
AEVAL + P+ + V ETG+ + L Q HR
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCNIGSQQLNQREMHR 135
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A +AGL P Y T + GP H P+F TV + ++ P +K AE++A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 146 A-IAAWSALKRMP 157
A +A +K +P
Sbjct: 95 AEVALMEIVKSIP 107
>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
Length = 61
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 96 AHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
A R G LP Y T +SG H P F TVE+ G+ FTG+ A+TKKQAE +AA A++A +R
Sbjct: 2 AQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTAYTARRR 61
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
ETG+ KNLLQE A + +P Y + G P F CTVE+ G+ + G A+TKK AE
Sbjct: 467 ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEI 525
Query: 144 NAAIAAWSALK 154
AA A A++
Sbjct: 526 KAARTALLAIQ 536
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N + S + + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIY----KNLLQETAHR 98
AEVAL + P+ + V ETG+ + L Q HR
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCNIGSQQLNQREMHR 135
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A +AGL P Y T + GP H P+F TV + ++ P +K AE++A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 146 A-IAAWSALKRMP 157
A +A +K +P
Sbjct: 95 AEVALMEIVKSIP 107
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 9 LAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL 68
A+R+ P Y EG H P+F +V + F S + ++AE AA VA +L
Sbjct: 77 FAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 136
Query: 69 STRGPSRSLTA-RVLDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGH-VPIFTCTVEL 125
+T S A ++D+ ++ K++L E A + LP Y+ V + +F V
Sbjct: 137 TTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVF 196
Query: 126 AGMNFTGEPAKTKKQAEKNAA 146
G + GE A KK AE+NAA
Sbjct: 197 DGNAYHGESAPNKKDAEQNAA 217
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 96 AHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF--TGEPAKTKKQAEKNAAIAAWSAL 153
A R P+Y G H P FTCTVE+ F TG ++ KK+AE++AA A+ L
Sbjct: 78 AERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSR-KKEAEQDAARVAYEIL 136
Query: 154 KRMPNLDSLTNKETDKPEEQDQAIVARVLSNFRAK 188
+ D KE + +QD +L F K
Sbjct: 137 TTVSESDV---KEAFELIDQDAVFCKSILIEFAVK 168
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 58.9 bits (141), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 82 LDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQ 140
+ ETG+ KNLLQE A + +P+Y + G V FTCTVE+ G+ +TG +TKK
Sbjct: 3 MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKD 62
Query: 141 AEKNAAIAAWSALK 154
AE +A A A++
Sbjct: 63 AEISAGRTALLAIQ 76
>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
Length = 949
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 72/173 (41%), Gaps = 36/173 (20%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YKN LQE AQ S LPSYT F A VNF G ++S +T + AE AA
Sbjct: 141 YKNILQEFAQGSAKLLPSYTVDTTNSG----FIAEVNFEGVRYKSKIAHSTKKAAEQNAA 196
Query: 62 EVALNVLST--RGPSRSLTARVL-----------DETGI---------------YKNLLQ 93
E AL L PS ++ + D TG YK+ LQ
Sbjct: 197 ESALQALGLVRDSPSETVVSEKFESVLKNTPAKNDFTGCSKDQLYLSSPAINISYKSYLQ 256
Query: 94 ETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
E + G P Y T G + V+ G + TG+PA TKK +E+ AA
Sbjct: 257 EHVVQRGWRGPSYMTTYHQGGAQTV----VQFCGKSLTGKPASTKKLSEQLAA 305
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 42/189 (22%)
Query: 2 YKNQLQELAQRSCFNLPSY---TCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEH 58
+K+ LQE Q+ + PSY C + F ++V G+ F + YC+ + AE
Sbjct: 20 FKSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNF-TGGYCSKRKAAEQ 78
Query: 59 AAAEVAL-----------------------NVLSTRGPSRSLTARVLDETGI-------- 87
AA+ AL ++++ S++ ++ L+ +
Sbjct: 79 DAAKQALKNIQQTLISSTPSSQNIATYSNPSIITNTNNSQANLSQSLESSFTPQHQTTPI 138
Query: 88 --YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAK-TKKQAEKN 144
YKN+LQE A + LP YT + G F V G+ + + A TKK AE+N
Sbjct: 139 KSYKNILQEFAQGSAKLLPSYTVDTTNSG----FIAEVNFEGVRYKSKIAHSTKKAAEQN 194
Query: 145 AAIAAWSAL 153
AA +A AL
Sbjct: 195 AAESALQAL 203
>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|81391047|sp|Q6AFJ4.1|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 237
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE A G PVYT + +GP H F TV++ G+ +KKQAE AA++
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 149 AWSAL 153
AW+AL
Sbjct: 223 AWTAL 227
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K LQE A P YT I GPDH+ F A+V+ G + + T+ +QAE AAA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGG-LVTASGEGTSKKQAEMAAAL 221
Query: 63 VALNVLS 69
A L+
Sbjct: 222 SAWTALT 228
>gi|357515751|ref|XP_003628164.1| DsRNA-binding protein [Medicago truncatula]
gi|355522186|gb|AET02640.1| DsRNA-binding protein [Medicago truncatula]
Length = 96
Score = 55.8 bits (133), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
I K++ H +N PVY+T +SG H PIF+ VE+ G FTG+ AK+KK AE +AA
Sbjct: 25 IIKHIFWNENHLVPIN-PVYSTNKSGEAHKPIFSSQVEIKGEIFTGQEAKSKKHAEMSAA 83
Query: 147 IAAWSALKR 155
A+ L +
Sbjct: 84 KVAYKFLDQ 92
>gi|147779552|emb|CAN61162.1| hypothetical protein VITISV_001392 [Vitis vinifera]
Length = 458
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 24/27 (88%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPD 28
YKNQLQELAQRSCFNLPSYTCIR D
Sbjct: 99 YKNQLQELAQRSCFNLPSYTCIRRPKD 125
>gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333483042|gb|AEF41602.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 283
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 16 NLPSYTCIREGPDH-APRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNV---LSTR 71
L Y + +G + R KAS+ +G ES L A V L + L R
Sbjct: 147 GLGEYFLLGKGEEMTGGRDKASILADG--MESLLGAVYLEHGLDVARGVVLTLFKGLLER 204
Query: 72 GPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFT 131
GP LD +K LQE GL +P Y GP H FT TV +AG +
Sbjct: 205 GPR---LGAGLD----WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLG 257
Query: 132 GEPAKTKKQAEKNAAIAAWSAL 153
+TKK+AE+ AA AAW L
Sbjct: 258 SGTGRTKKEAEQKAAGAAWRHL 279
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P+Y +GPDH F A+V GE S + T ++AE AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGT-GRTKKEAEQKAA 272
Query: 62 EVALNVLST 70
A LS+
Sbjct: 273 GAAWRHLSS 281
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H+ FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSALKRMPNLDSLTNKETDKPEEQDQAI 177
+AW L D + + E++ A+
Sbjct: 228 SAWRELTEQAERDRAARAKQMQAEQEQAAV 257
>gi|386852253|ref|YP_006270266.1| ribonuclease III [Actinoplanes sp. SE50/110]
gi|359839757|gb|AEV88198.1| ribonuclease III [Actinoplanes sp. SE50/110]
Length = 245
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y SGP H FT V +AG+ + G ++KKQAE+ AA
Sbjct: 167 WKTSLQELTAALGLGVPDYVIEDSGPDHAKTFTAWVVVAGVRYGGSDGRSKKQAEQRAAA 226
Query: 148 AAWSALKRMPNLDSLTNKETDKPE 171
AAW L D DKPE
Sbjct: 227 AAWRMLTERSEADG-----DDKPE 245
>gi|428180344|gb|EKX49212.1| hypothetical protein GUITHDRAFT_105286 [Guillardia theta CCMP2712]
Length = 336
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 79 ARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTK 138
++V+D G NL R L +PV+ T R+GP H P F+CTV + F G TK
Sbjct: 77 SQVIDPKGNLINL----CTRNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQQPTK 132
Query: 139 KQAEKNAA-------IAAWSALKRMPNLDSLTNKETDKPEEQ 173
K AEK A+ A S + R P ++S +E+ K + Q
Sbjct: 133 KLAEKEASKQAVEGLFEAGSGIVRSPLVNSRLVEESAKSQTQ 174
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 80 RVLDETG--IYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAK 136
+VL+ G YK+LLQE + PVY V+ SGP H +F TV L G ++ K
Sbjct: 169 KVLENKGHKDYKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASYGPAQGK 228
Query: 137 TKKQAEKNAAIAAWSAL 153
+KK+AE+NAA AA+ L
Sbjct: 229 SKKEAEQNAAKAAYEEL 245
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y SGP H F TV + G+ + ++KK+AE+ AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAE 239
Query: 148 AAWSALKRM 156
A W A+K M
Sbjct: 240 ATWHAIKEM 248
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A+V G + S + ++AE AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGE-GRSKKEAEQRAA 238
Query: 62 EVALNVL 68
E + +
Sbjct: 239 EATWHAI 245
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKN 144
G+ KNLLQE A + +P+Y + G V FTCTVE+ G+ +TG +TKK AE +
Sbjct: 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEIS 63
Query: 145 AAIAAWSALK 154
A A A++
Sbjct: 64 AGRTALLAIQ 73
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y SGP H FT +AG + ++KK+AE+ AA
Sbjct: 182 WKTSLQELTAAVGLGVPEYVVTESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAE 241
Query: 148 AAWSALK 154
+AW A+K
Sbjct: 242 SAWRAIK 248
>gi|363420255|ref|ZP_09308349.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
gi|359736051|gb|EHK85002.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
Length = 267
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 32 RFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST---RGPSRSLTARVLDETGIY 88
R KAS+ +G ES L A EV L + + RGP LD +
Sbjct: 124 RDKASILADG--MESLLGAVHLAHGIDVAREVVLRLFAALLERGPRLGAG---LD----W 174
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE GL +P Y +GP H FT T + G + +TKK+AE+ AA A
Sbjct: 175 KTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVGRTKKEAEQKAASA 234
Query: 149 AWSAL 153
AW+AL
Sbjct: 235 AWNAL 239
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTVR--SGPGHVPIFTCTVELAGMNFTGEPAKTKKQA 141
ETG+ KNLLQE A + +P Y + SGP F C+VE+ G+ + G A+TKK A
Sbjct: 89 ETGLCKNLLQEYAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAARTKKGA 143
Query: 142 EKNAAIAAWSALK 154
E AA A A++
Sbjct: 144 EIKAARTALLAIQ 156
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL +P Y +GP H F+ TV +AG +F TKK+AE+ AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTTKKEAEQKAAE 214
Query: 148 AAWSAL 153
AW AL
Sbjct: 215 TAWRAL 220
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL + +P Y GPDH F A+V G F + + TT ++AE AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGN-GTTKKEAEQKAA 213
Query: 62 EVALNVLS 69
E A LS
Sbjct: 214 ETAWRALS 221
>gi|453078061|ref|ZP_21980795.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
gi|452757696|gb|EME16098.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
Length = 231
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G +PVY +GP H FT TV +AG F +TKK+AE+ AA
Sbjct: 138 WKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVGRTKKEAEQKAAS 197
Query: 148 AAWSAL 153
+AW L
Sbjct: 198 SAWQTL 203
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H+ FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
+AW L
Sbjct: 228 SAWRTL 233
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 45/68 (66%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK++LQ+L+Q+ + +P+ +EG +H+P F A+V + +F +P ++ ++A++AA
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 61 AEVALNVL 68
A+ A N
Sbjct: 61 AKQAHNYF 68
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MY N+LQEL Q++ + LP Y EGP H P F ++V F SP +TL+ ++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 61 AEVALN 66
A VA +
Sbjct: 61 AMVAFH 66
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNA 145
+Y N LQE + LP Y T GP H P+F+ TV + ++FT EPA T K +++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 146 AIAAW 150
A+ A+
Sbjct: 61 AMVAF 65
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALKRMPNLDSLTNKETDKPEEQDQAI 177
+AW A++ + + KE K E D+A+
Sbjct: 230 SAWRAIRAAADERAKVAKEPIK-ETADEAV 258
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H+ FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
+AW L
Sbjct: 228 SAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H+ FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
+AW L
Sbjct: 228 SAWRTL 233
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 184 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 243
Query: 148 AAWSALK 154
+AW ++K
Sbjct: 244 SAWRSIK 250
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 256
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT TV + G F ++KK+AE+ AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAAS 233
Query: 148 AAWSAL 153
AWSAL
Sbjct: 234 TAWSAL 239
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +PSY GPDH F A+V G+ F + ++AE AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAF-GVGVGRSKKEAEQKAA 232
Query: 62 EVALNVLS 69
A + LS
Sbjct: 233 STAWSALS 240
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAWSALK 154
+AW A++
Sbjct: 231 SAWRAIR 237
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW ++K
Sbjct: 230 SAWRSIK 236
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAWSALK 154
+AW A++
Sbjct: 231 SAWRAIR 237
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 176 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 235
Query: 148 AAWSALK 154
+AW A++
Sbjct: 236 SAWRAIR 242
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW A++
Sbjct: 230 SAWRAIR 236
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
>gi|354615572|ref|ZP_09033327.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
gi|353220077|gb|EHB84560.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
Length = 265
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL +P Y V +GP H F V + G + TKK+AE+ AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSLGEGDGTTKKEAEQKAAE 229
Query: 148 AAWSAL 153
+AW AL
Sbjct: 230 SAWRAL 235
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL + +P Y + GPDH F A V G TT ++AE AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSL-GEGDGTTKKEAEQKAA 228
Query: 62 EVALNVLS 69
E A L+
Sbjct: 229 ESAWRALN 236
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWSAL 153
+AW A+
Sbjct: 241 SAWRAI 246
>gi|406876301|gb|EKD25900.1| hypothetical protein ACD_79C01447G0004 [uncultured bacterium]
Length = 252
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+KNQLQEL Q P Y I +EGP+H F+ SV + +IF + T++++AE
Sbjct: 170 FKNQLQELTQEKYQATPQYKLIGQEGPEHKKSFRVSV-YLKDIFITYGTSTSIKKAEQIC 228
Query: 61 AEVALNVLSTR 71
++ ALN+L R
Sbjct: 229 SKNALNLLKIR 239
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW ++K
Sbjct: 230 SAWLSIK 236
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVAL 65
AEVAL
Sbjct: 93 AEVAL 97
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A +AGL P Y T + GP H P+F TV + ++ P +K AE++A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 146 A-IAAWSALKRMP 157
A +A +K +P
Sbjct: 93 AEVALMEIVKSIP 105
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWSALK 154
+AW +++
Sbjct: 241 SAWRSIR 247
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length = 240
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y SGP H F TV +AG + ++KK+AE+ AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAE 223
Query: 148 AAWSALK 154
+AW A++
Sbjct: 224 SAWKAIR 230
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A+V G+ + S + ++AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGE-GRSKKEAEQQAA 222
Query: 62 EVALNVL 68
E A +
Sbjct: 223 ESAWKAI 229
>gi|383782235|ref|YP_005466802.1| putative ribonuclease III [Actinoplanes missouriensis 431]
gi|381375468|dbj|BAL92286.1| putative ribonuclease III [Actinoplanes missouriensis 431]
Length = 246
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y SGP H FT V +AG + G ++KKQAE+ AA
Sbjct: 167 WKTSLQELTAALGLGVPDYEIEDSGPDHAKTFTAWVVVAGERYGGSEGRSKKQAEQRAAA 226
Query: 148 AAWSAL 153
AAW L
Sbjct: 227 AAWRTL 232
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW +++
Sbjct: 230 SAWRSIR 236
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 183 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 242
Query: 148 AAWSAL 153
+AW A+
Sbjct: 243 SAWRAI 248
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 148 AAWSALK 154
+AW +++
Sbjct: 245 SAWRSIR 251
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+ + ++KK+AE+ AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTGTGRSKKEAEQQAAE 197
Query: 148 AAWSAL 153
+AW A+
Sbjct: 198 SAWRAI 203
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW +++
Sbjct: 234 SAWRSIR 240
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSAL 153
+AW A+
Sbjct: 230 SAWRAI 235
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW ++
Sbjct: 234 SAWRGIR 240
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW ++
Sbjct: 234 SAWRGIR 240
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW +++
Sbjct: 234 SAWRSIR 240
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 177 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236
Query: 148 AAWSALK 154
+AW ++
Sbjct: 237 SAWREIR 243
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW +++
Sbjct: 230 SAWRSIR 236
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K +LQ RAG +P Y T SG + +C V + G F GEPA++KKQAEKNAA
Sbjct: 1066 KGILQTLVQRAGFAVPTYQTRSSGSQFI---SCVV-VRGKKFIGEPAESKKQAEKNAAAM 1121
Query: 149 AWSALKRMPNL 159
A L +P +
Sbjct: 1122 AAEWLTSLPRM 1132
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW ++
Sbjct: 234 SAWREIR 240
>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
Length = 246
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 34/66 (51%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y SGP H FT TV +AG TKK+AE+ AA
Sbjct: 170 WKTSLQELTASGGLGVPEYRVEDSGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAE 229
Query: 148 AAWSAL 153
AW AL
Sbjct: 230 TAWRAL 235
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y GPDH F A+V G TT ++AE AA
Sbjct: 170 WKTSLQELTASGGLGVPEYRVEDSGPDHRKEFTATVLVAGRAL-GEGNGTTKKEAEQKAA 228
Query: 62 EVALNVLS 69
E A LS
Sbjct: 229 ETAWRALS 236
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K +LQ RAG +P Y T SG + +C V + G F GEPA++KKQAEKNAA
Sbjct: 949 KGILQTLVQRAGFAVPTYQTRSSGSQFI---SCVV-VRGKKFIGEPAESKKQAEKNAAAM 1004
Query: 149 AWSALKRMPNL 159
A L +P +
Sbjct: 1005 AAEWLTSLPRM 1015
>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Sphaerochaeta globus str. Buddy]
gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Sphaerochaeta globus str. Buddy]
Length = 248
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE Q+ +PSYT +R+ GP+H F V+ NG++F P+ +QAE A
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVF-GPASGANKKQAEQMA 234
Query: 61 AEVALNVL 68
A++A + L
Sbjct: 235 AKLAYDQL 242
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQE + +P YT VR +GP H F V++ G F KKQAE+ AA
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVFGPASGANKKQAEQMAA 235
Query: 147 IAAWSALKRMPNLD 160
A+ L + PN D
Sbjct: 236 KLAYDQLVK-PNKD 248
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 238
Query: 148 AAW 150
+AW
Sbjct: 239 SAW 241
>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A GL +P Y +GP H FT V L F G ++KK+AE+ A
Sbjct: 156 WKTSLQEMAAHHGLGVPRYHLEGTGPDHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAE 215
Query: 148 AAWSAL 153
AW L
Sbjct: 216 IAWRTL 221
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQE+A +P Y GPDHA F A V+ +F + + ++AE A
Sbjct: 156 WKTSLQEMAAHHGLGVPRYHLEGTGPDHARSFTAEVHLGERVFAGGA-GRSKKEAEQEVA 214
Query: 62 EVALNVLS 69
E+A L+
Sbjct: 215 EIAWRTLA 222
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 148 AAW 150
+AW
Sbjct: 198 SAW 200
>gi|330836489|ref|YP_004411130.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
gi|329748392|gb|AEC01748.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
Length = 256
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE + PVY +R SGP H F V + G F KK+AE+NAA
Sbjct: 181 YKTLLQEIIQKRYHKYPVYELLRTSGPEHDRTFWVQVNVVGNIFGPASGANKKEAEQNAA 240
Query: 147 IAAWSALKRMPNLDS 161
AA+ AL N D+
Sbjct: 241 CAAYEALTGHHNKDT 255
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE+ Q+ P Y +R GP+H F VN G IF P+ ++AE A
Sbjct: 181 YKTLLQEIIQKRYHKYPVYELLRTSGPEHDRTFWVQVNVVGNIF-GPASGANKKEAEQNA 239
Query: 61 AEVALNVLS 69
A A L+
Sbjct: 240 ACAAYEALT 248
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSAL 153
+AW ++
Sbjct: 234 SAWRSI 239
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ Y ++EGP H P FK++V N +ES + + AE +A
Sbjct: 32 VFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAAEQSA 91
Query: 61 AEVALNVLS---TRG 72
AEVAL ++ TRG
Sbjct: 92 AEVALMEIAMSETRG 106
Score = 42.0 bits (97), Expect = 0.70, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A + G+ Y T++ GP H P+F TV + + P ++K AE++A
Sbjct: 32 VFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAAEQSA 91
Query: 146 AIAA 149
A A
Sbjct: 92 AEVA 95
>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
Length = 249
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 73 PSRSLTARVLDE---------TGI-YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCT 122
PSR L R+ + G+ +K LQE G +P Y GP H+ +FT T
Sbjct: 150 PSRELVHRLFADLLHSAPLLGAGLDWKTSLQELTAAGGHGVPEYRIDEEGPDHLKVFTAT 209
Query: 123 VELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ G + +TKK+AE+ AA AW L
Sbjct: 210 AVVGGRDLGSGAGRTKKEAEQKAAELAWRTL 240
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y EGPDH F A+ G S + T ++AE AA
Sbjct: 175 WKTSLQELTAAGGHGVPEYRIDEEGPDHLKVFTATAVVGGRDLGSGA-GRTKKEAEQKAA 233
Query: 62 EVALNVLS 69
E+A LS
Sbjct: 234 ELAWRTLS 241
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL +P Y +GP H FT TV +AG TKK+AE+ AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTATVLVAGRPLGHGAGSTKKEAEQKAAE 214
Query: 148 AAWSAL 153
AW +L
Sbjct: 215 TAWRSL 220
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 226
Query: 148 AAW 150
+AW
Sbjct: 227 SAW 229
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 168 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 227
Query: 148 AAWSAL 153
+AW ++
Sbjct: 228 SAWRSI 233
>gi|347758995|ref|YP_004866557.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591513|gb|AEP10555.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 232
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G LP YT + RSGP H PIFT +V + G + E +++ AEK AA
Sbjct: 161 KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEGFDEVAEQGTSRRAAEKAAA 219
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ LP YT I R GPDHAP F SV G E T+ R AE AAA
Sbjct: 161 KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEG-FDEVAEQGTSRRAAEKAAA 219
Query: 62 EVALNVL 68
LN++
Sbjct: 220 TRLLNII 226
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+QLQEL QR L Y ++E GP H+ F + V+ NGE + + + ++AE A
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGT-GKSKKEAEQHA 230
Query: 61 AEVALNVLSTR 71
AE+AL L +
Sbjct: 231 AEIALKNLKNK 241
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+ LQE R G+ L Y ++ GP H F V L G K+KK+AE++AA
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSKKEAEQHAA 231
Query: 147 IAAWSALKRMPN 158
A LK N
Sbjct: 232 EIALKNLKNKQN 243
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K +LQE AQ+ P Y I+EGP H P F+++V N ++S + AE +A
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74
Query: 61 AEVALNVLS 69
EVAL L+
Sbjct: 75 VEVALMELA 83
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
++K LQE A + GL P+Y T++ GP H P F TV + + + P ++A + +A
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74
Query: 147 IAAWSALKRMPNLDSLTN 164
+ AL + D + +
Sbjct: 75 VEV--ALMELAKCDEVND 90
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWSALK 154
+AW +++
Sbjct: 241 SAWRSIR 247
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL P Y GP H +FT TV + G + KK AE AA
Sbjct: 176 WKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLVDGRTLGAGTGRNKKSAEMIAAE 235
Query: 148 AAWSALK 154
AW +L+
Sbjct: 236 NAWVSLR 242
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y SGP H F TV +AG ++ ++KK+AE+ AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 148 AAWSALK 154
+AW A+K
Sbjct: 224 SAWKAIK 230
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A+V GE + + ++AE AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESY-GLGEGRSKKEAEQQAA 222
Query: 62 EVALNVLSTR 71
E A + R
Sbjct: 223 ESAWKAIKAR 232
>gi|348507385|ref|XP_003441236.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Oreochromis niloticus]
Length = 497
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 27/206 (13%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
Y +L E A + + +GP H F +G+ + S T ++A+ AA
Sbjct: 6 YVGKLNEYAHKWHSGVSYEEVGSDGPPHDKVFNLRAVIDGKAYPSGE-GKTKKEAKQNAA 64
Query: 62 EVALNVLSTRGPSRSLTAR----------VLD-------ET---GIYKNLLQETAHRAGL 101
+ AL LS G S+ +R VL ET G+ + Q+T
Sbjct: 65 KKALESLSQLGHQDSVESRNNAAEASVQVVLSSKDTSFTETNFIGLVNHYCQKTKRSHSY 124
Query: 102 NLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDS 161
+ R GP H P+F +++ + K+ K+A++NAA AWSAL+ + DS
Sbjct: 125 D----EVGRDGPSHKPLFFYKLKIDNKEYPVGEGKSIKEAKQNAAELAWSALQEQSDWDS 180
Query: 162 LTNKETDKPEE--QDQAIVARVLSNF 185
D E + ++ +R LS+F
Sbjct: 181 KDADNNDSIENNTRQTSVQSRFLSDF 206
>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
Length = 338
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE R GL PVY +GP H +FT V + + +TKK+AE AA
Sbjct: 261 WKTSLQELCARRGLRPPVYEVTEAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAG 320
Query: 148 AAWSAL 153
AW +
Sbjct: 321 HAWGVI 326
>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length = 347
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE R GL PVY +GP H +FT V + + +TKK+AE AA
Sbjct: 270 WKTSLQELCARRGLRPPVYEVAEAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAG 329
Query: 148 AAWSAL 153
AW +
Sbjct: 330 HAWGVI 335
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y SGP H F TV +AG ++ ++KK+AE+ AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 148 AAWSALK 154
+AW A++
Sbjct: 224 SAWKAIR 230
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A+V GE + + ++AE AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESY-GLGEGRSKKEAEQQAA 222
Query: 62 EVALNVLSTR 71
E A + R
Sbjct: 223 ESAWKAIRAR 232
>gi|377573013|ref|ZP_09802089.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377538287|dbj|GAB47254.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 295
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A G +P Y GP H +FT + + ++KK+AE+ AA
Sbjct: 175 WKTSLQELAASGGHGMPEYRVTEEGPDHEKVFTAHAVVGDEDLGTGVGRSKKEAEQQAAH 234
Query: 148 AAWSALKRMPNLDSLTNKETDKPEEQDQAIVARVLS 183
AW+ L R D++ N E E +VLS
Sbjct: 235 TAWTELTRRA--DAVLNAEVTPQETTTDDTTGQVLS 268
>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Callithrix jacchus]
Length = 1181
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT---AR 80
+EGP H P+F+ V + F S S + + A+ AAE A+ L + L+ R
Sbjct: 637 KEGPAHEPKFEYCVQVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMLSDDQVR 695
Query: 81 VLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA 135
+ E Y N L E A G +SGP H P F ++ G F A
Sbjct: 696 RIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAEKNAAIAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 756 HSKKQGKQEAADAALRVL 773
>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
Length = 377
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K QLQELAQ P Y + E GPDH+ F+ GE+ + + AE AA
Sbjct: 175 FKTQLQELAQSRVRATPRYRVVGEHGPDHSKTFEVETELRGEVV-GRGTGRSKKDAEQAA 233
Query: 61 AEVALNVLSTR 71
A++ L++L R
Sbjct: 234 AKIGLDLLLRR 244
>gi|356569838|ref|XP_003553102.1| PREDICTED: caltractin-like [Glycine max]
Length = 265
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 109 VRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD 160
+++G H+P F TVE+ G+ F G+ ++KKQ+E+NA A+ ALK LD
Sbjct: 1 MQAGSPHMPTFFSTVEVEGVEFHGKGGRSKKQSEENATKIAYIALKEYELLD 52
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + G+ +P Y SGP H F V + + ++KK+AE+ AA
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
AW AL+
Sbjct: 230 TAWKALR 236
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL + +P Y GPDHA F+A V + + + ++AE AA
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTY-GHGIGRSKKEAEQQAA 228
Query: 62 EVALNVLSTRGP 73
E A L P
Sbjct: 229 ETAWKALRAAHP 240
>gi|331698524|ref|YP_004334763.1| ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
Length = 238
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A L +P Y GP H+ FT T + G +TKK+AE+ AA
Sbjct: 161 WKTSLQELTAAAELGVPEYRITEDGPDHLKTFTATAVVGGRELGSGDGRTKKEAEQKAAA 220
Query: 148 AAWSAL 153
AW L
Sbjct: 221 LAWRTL 226
>gi|339320327|ref|YP_004680022.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
gi|338226452|gb|AEI89336.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
Length = 222
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+LLQE A R LP+Y V R G H P FT +V M G K+KK+AE+NAA
Sbjct: 151 KSLLQEWAQRDNGALPIYKIVKREGVAHSPTFTISVTAHDMQAIG-IGKSKKEAEQNAAT 209
Query: 148 AAWSALKRM 156
A S + +
Sbjct: 210 ALLSQINEL 218
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELA-GMNFTGEPAKTKKQAEKNAAI 147
K LQE+A R GL PVY SGP H F V + + TGE +KKQAE AA+
Sbjct: 168 KTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGE-GSSKKQAEMTAAL 226
Query: 148 AAWSALK 154
AW+ L+
Sbjct: 227 EAWTRLE 233
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKSFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium gilvum Spyr1]
gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium gilvum Spyr1]
Length = 234
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 13 SCFNLPSYTCIREGPDHAPRF-KASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71
S L +Y + +G +++ K+S+ +G ES L AA EV L + S
Sbjct: 92 SEHGLGAYLLLGKGEENSGGADKSSILADG--VESLLGAIYLEHGAVAAREVILRLFSDL 149
Query: 72 GPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFT 131
+ LD +K+ LQE L P Y +GP H FT V +A
Sbjct: 150 LDTAPTLGAGLD----WKSSLQELTASLALGAPSYHVTSTGPDHDKEFTAVVIIAEREHG 205
Query: 132 GEPAKTKKQAEKNAAIAAWSALKR 155
+TKK+AE AA AAW+AL+R
Sbjct: 206 TGVGRTKKEAELKAASAAWNALQR 229
>gi|424851985|ref|ZP_18276382.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666650|gb|EHI46721.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 252
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT TV + G ++KK+AE+ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A+V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALNVLSTRGP 73
A N LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y GP H FT + G+++ ++KK+AE+ AA
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAW 150
+AW
Sbjct: 231 SAW 233
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT----TLRQAE 57
+K LQEL +P Y EGPDH F A+ G SY T + ++AE
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGG-----VSYGTGTGRSKKEAE 225
Query: 58 HAAAEVA 64
AAE A
Sbjct: 226 QQAAESA 232
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V +G + S + AE +A
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 61 AEVALNVLSTRGPSRSLTARVLDETG 86
AEVAL L+ ++ + ETG
Sbjct: 78 AEVALRELAKSSELSQCVSQPVHETG 103
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A + L PVY V+ GP H +F TV L G+ + P +K AE++A
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 146 AIAAWSALKRMPNL 159
A A L + L
Sbjct: 78 AEVALRELAKSSEL 91
>gi|384101471|ref|ZP_10002510.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
gi|383841025|gb|EID80320.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
Length = 252
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT TV + G ++KK+AE+ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A+V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALNVLSTRGP 73
A N LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665]
Length = 130
Score = 48.1 bits (113), Expect = 0.010, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 81 VLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQ 140
+L E+ +K ++ E A R GL Y GP H P + T+ + + A +KKQ
Sbjct: 49 LLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQ 108
Query: 141 AEKNAAIAAWSALK 154
AE++AA A+W AL+
Sbjct: 109 AERDAAAASWPALE 122
>gi|432336959|ref|ZP_19588421.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
gi|430776123|gb|ELB91584.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
Length = 252
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT TV + G ++KK+AE+ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A+V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALNVLSTRGP 73
A N LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 178 WKTSLQELTATEGLGVPEYMVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 237
Query: 148 AAW 150
+AW
Sbjct: 238 SAW 240
>gi|453364526|dbj|GAC79803.1| ribonuclease III [Gordonia malaquae NBRC 108250]
Length = 242
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + G P Y +GP H FT T +AG + +TKK+AE+NAA
Sbjct: 164 WKTSLQELSAERGTGQPHYQVTSTGPDHDKEFTATAVVAGRSLGEGVGRTKKEAEQNAAA 223
Query: 148 AAWSALKRMPNL 159
AW L P +
Sbjct: 224 IAWRELDGDPTV 235
>gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
Length = 252
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 38/78 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G N PVYT GP H IFT V + G+ + KK AE+N+A
Sbjct: 175 WKTELQERVAELGGNPPVYTATAKGPEHEQIFTAEVAIDGVRRGVGRGQNKKTAEQNSAR 234
Query: 148 AAWSALKRMPNLDSLTNK 165
A+ LK P +L K
Sbjct: 235 EAFFFLKEHPEAVALRQK 252
>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397736918|ref|ZP_10503594.1| ribonuclease III [Rhodococcus sp. JVH1]
gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|396927202|gb|EJI94435.1| ribonuclease III [Rhodococcus sp. JVH1]
Length = 252
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT TV + G ++KK+AE+ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A+V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALNVLSTRGP 73
A N LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|419964641|ref|ZP_14480595.1| ribonuclease III [Rhodococcus opacus M213]
gi|414570036|gb|EKT80775.1| ribonuclease III [Rhodococcus opacus M213]
Length = 252
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT TV + G ++KK+AE+ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A+V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALNVLSTRGP 73
A N LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
Length = 252
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT TV + G ++KK+AE+ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A+V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALNVLSTRGP 73
A N LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|440683448|ref|YP_007158243.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
gi|428680567|gb|AFZ59333.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
Length = 395
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LLQ+ A + G ++P YTT++ +G H FT VE+ G K KK AEK AA
Sbjct: 327 KGLLQQYAQKNGFDIPEYTTIQETGTDHNKEFTVQVEIGGQICGQGKGKRKKDAEKQAAA 386
Query: 148 AAWSALK 154
A L+
Sbjct: 387 NALEKLR 393
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK+ LQ + Q+ + LP+Y ++G DH+P F A+V N F SPS ++ ++A+ A
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 61 AEVALNVLS 69
A++A + S
Sbjct: 61 AKLAYDHFS 69
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+LLQE R N PVY + RSGP H +F V ++ + + + KK AE+ AA
Sbjct: 156 YKSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAYGPGTGRNKKTAEQEAA 215
Query: 147 IAAWSALKR 155
A+ AL++
Sbjct: 216 KMAYEALEK 224
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL QR N P Y + R GPDHA F V + +I P + AE A
Sbjct: 156 YKSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVS-DIAYGPGTGRNKKTAEQEA 214
Query: 61 AEVALNVL 68
A++A L
Sbjct: 215 AKMAYEAL 222
>gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58]
gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58]
Length = 244
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 81 VLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQ 140
+L E+ +K ++ E A R GL Y GP H P + T+ + + A +KKQ
Sbjct: 163 LLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGEREYDSAVASSKKQ 222
Query: 141 AEKNAAIAAWSALK 154
AE++AA A+W AL+
Sbjct: 223 AERDAAAASWPALE 236
>gi|332298046|ref|YP_004439968.1| ribonuclease 3 [Treponema brennaborense DSM 12168]
gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
Length = 256
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE + PVY V R+GP H F +V L + + K KK+AE++AA
Sbjct: 185 YKTLLQEFYQKKYKECPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAA 244
Query: 147 IAAWSALK 154
AW A++
Sbjct: 245 RLAWEAVE 252
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K +LQEL Q++ + LP Y EGP H P F ++V F SP +TL+ ++ AA
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 63 VALN 66
VA +
Sbjct: 93 VAFH 96
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG-EPAKTKKQAEKNAAI 147
K LQE + LP Y T GP H P+F+ TV + ++FT +PA T K +++ AA+
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 148 AAW 150
A+
Sbjct: 93 VAF 95
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQ+ AQR C N P+Y + E GPDH+ FK S + G+ +++ ++ ++AE A
Sbjct: 197 YKSLLQQFAQRECGNTPTYHLLDEKGPDHSKCFKISASVGGKKYQA-AWGRNKKEAEQRA 255
Query: 61 AEVAL 65
A AL
Sbjct: 256 ANNAL 260
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 42 EIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGL 101
++FES L E AA + N + GP L A + G YK+LLQ+ A R
Sbjct: 155 DVFESLIAAIYLDGGEQAARQFINNYI---GPEVELAA-AGELGGNYKSLLQQFAQRECG 210
Query: 102 NLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
N P Y + GP H F + + G + + KK+AE+ AA A + +K
Sbjct: 211 NTPTYHLLDEKGPDHSKCFKISASVGGKKYQAAWGRNKKEAEQRAANNALAEIK 264
>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
Length = 147
Score = 47.4 bits (111), Expect = 0.015, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 78 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 136
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 137 AQFAINQLTHR 147
>gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665]
gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665]
Length = 220
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 81 VLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQ 140
+L E+ +K ++ E A R GL Y GP H P + T+ + + A +KKQ
Sbjct: 139 LLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQ 198
Query: 141 AEKNAAIAAWSALK 154
AE++AA A+W AL+
Sbjct: 199 AERDAAAASWPALE 212
>gi|359408393|ref|ZP_09200863.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676587|gb|EHI48938.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
Length = 239
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+ LQE A A + P+Y V ++G H P+FT +VE++G+ + +T+KQAE+ AA
Sbjct: 164 KSELQEWAASAKYDRPLYHLVSQTGSAHEPMFTMSVEVSGLGVSAGEGRTRKQAEREAA 222
>gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542]
gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542]
Length = 234
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQE A P YT EGPDHA F A V +GEI T + AE AA
Sbjct: 166 WKTSLQEAAAERNVGAPEYTSEGEGPDHARIFTAHVIIDGEIL-GTGQGTAKKHAEQIAA 224
Query: 62 EVALNVLSTR 71
E A L+ R
Sbjct: 225 EQAYVALTGR 234
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 74 SRSLTARVLDET---------GI-YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+RS R+LD T G+ +K LQE A + P YT+ GP H IFT V
Sbjct: 142 ARSFVHRLLDSTLDAAADLGAGLDWKTSLQEAAAERNVGAPEYTSEGEGPDHARIFTAHV 201
Query: 124 ELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ G KK AE+ AA A+ AL
Sbjct: 202 IIDGEILGTGQGTAKKHAEQIAAEQAYVAL 231
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 77/197 (39%), Gaps = 53/197 (26%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K++L ELAQ+ P+Y I A + ++V FNG F+ S C + AE AA
Sbjct: 245 FKSKLNELAQKRHLGTPTYQTIYS----AGGYLSTVVFNGREFKGMSPCMKKKDAEQNAA 300
Query: 62 EVALNVLS---------------------TRGPSRSLTARVLDE---------------- 84
VA NVLS P S ++ D+
Sbjct: 301 FVAYNVLSNDLSSLPPVKAPAVKKPPPVKNSQPMISFISQNQDQKTNNTEKKKSMVNQQN 360
Query: 85 -------TGIYKNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAK 136
+ KN LQE R LP Y T + S V TV + G+++ GE
Sbjct: 361 HSNNASLSLSSKNRLQEYCQRLKKALPQYKTALNSDKTRV----STVIVEGVHYQGEAKV 416
Query: 137 TKKQAEKNAAIAAWSAL 153
KK+AE +AA A AL
Sbjct: 417 FKKEAELSAASIALKAL 433
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V +G + S + AE +A
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 61 AEVALNVLS 69
AEVAL L+
Sbjct: 64 AEVALRELA 72
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNA 145
++K+ LQE A + L PVY V+ GP H +F TV L G+ + P +K AE++A
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 146 AIAAWSALKR 155
A A L +
Sbjct: 64 AEVALRELAK 73
>gi|357462007|ref|XP_003601285.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
gi|355490333|gb|AES71536.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
Length = 343
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK++LQ+ QR + +P+Y I EG HA +F+++V G + AE
Sbjct: 43 VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEI 102
Query: 61 AEVALNVLS--TRGPSRSLTARV------LDETGIYKN-----LLQET 95
A++AL + +G S V D YKN LL+ET
Sbjct: 103 AKIALEYFTEKIKGDVWSFVLEVKKIPETFDSPINYKNSFISPLLEET 150
>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|453068807|ref|ZP_21972078.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|452764990|gb|EME23255.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
Length = 257
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 32 RFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNV---LSTRGPSRSLTARVLDETGIY 88
R K S+ +G ES L+ A V L++ L TR P L LD +
Sbjct: 123 RDKPSILADG--MESILGAIHLQHGIETARRVVLDLFDDLLTRAP---LLGAGLD----W 173
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE G +PVY +GP H FT TV ++G ++KK+AE+ AA +
Sbjct: 174 KTSLQELTAEHGAGVPVYEITATGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASS 233
Query: 149 AWSAL 153
AW +
Sbjct: 234 AWKTM 238
>gi|407648449|ref|YP_006812208.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407311333|gb|AFU05234.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 244
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT T + G+ + ++KK+AE+NAA
Sbjct: 174 WKTSLQEHTAEHGLGVPSYEITSTGPDHDKEFTATAVVGGLAYGKGVGRSKKEAEQNAAA 233
Query: 148 AAWSALKRMPN 158
AA++AL + P+
Sbjct: 234 AAYTALTQKPS 244
>gi|402856396|ref|XP_003892776.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Papio anubis]
Length = 1181
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTA---- 79
+EGP H P+F+ V + F S S + + A+ AAE A+ L + S+T+
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEA-TNSMTSDDQV 694
Query: 80 RVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP 134
R + E Y N L E A G +SGP H P F ++ G F
Sbjct: 695 RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVC 754
Query: 135 AKTKKQAEKNAAIAAWSAL 153
A +KKQ ++ AA AA L
Sbjct: 755 AHSKKQGKQEAADAALRVL 773
>gi|379710093|ref|YP_005265298.1| RNase III [Nocardia cyriacigeorgica GUH-2]
gi|374847592|emb|CCF64662.1| RNase III [Nocardia cyriacigeorgica GUH-2]
Length = 240
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT T + G + ++KK+AE+ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTVIGGQAYGQGVGRSKKEAEQKAAG 230
Query: 148 AAWSAL 153
AA+ AL
Sbjct: 231 AAYQAL 236
>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 3 [Macaca mulatta]
Length = 1180
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTA---- 79
+EGP H P+F+ V + F S S + + A+ AAE A+ L + S+T+
Sbjct: 636 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEA-TNSMTSDDQV 693
Query: 80 RVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP 134
R + E Y N L E A G +SGP H P F ++ G F
Sbjct: 694 RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVC 753
Query: 135 AKTKKQAEKNAAIAAWSAL 153
A +KKQ ++ AA AA L
Sbjct: 754 AHSKKQGKQEAADAALRVL 772
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L R
Sbjct: 219 AQFAINKLIHR 229
>gi|110633304|ref|YP_673512.1| ribonuclease III [Chelativorans sp. BNC1]
gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1]
Length = 238
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 22/149 (14%)
Query: 21 TCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR----GPSR 75
T IR G D A + VN ++ E+ L+ A + + R G +R
Sbjct: 100 TLIRTGSDLKALAMRKQVNLRADVLEALIAVIYLQDGLDGARQFIRTHWTERSTAEGAAR 159
Query: 76 SLTARVLDETGIYKNLLQETAHRAGLNLPVYTT-VRSGPGHVPIFTCTVELAGMNFTGEP 134
+ K LQE AHR P Y R GP H P+FT V +AG
Sbjct: 160 ADA----------KTALQEWAHRVSSATPDYVIESREGPDHDPVFTAVVRIAGFQEGRGR 209
Query: 135 AKTKKQAEKNAAI------AAWSALKRMP 157
++K++AE+ AA A W+ ++ +P
Sbjct: 210 GRSKREAEQAAATEVLIREAVWTPMESLP 238
>gi|377561842|ref|ZP_09791272.1| ribonuclease III [Gordonia otitidis NBRC 100426]
gi|377521037|dbj|GAB36437.1| ribonuclease III [Gordonia otitidis NBRC 100426]
Length = 256
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQELA + P Y GPDH+ F A GE T ++AE AA
Sbjct: 182 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEEL-GEGVGRTKKEAEQKAA 240
Query: 62 EVALNVLSTRGPS 74
+A L+ RGPS
Sbjct: 241 SLAWQALAERGPS 253
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A G P Y +GP H FT +AG +TKK+AE+ AA
Sbjct: 182 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQKAAS 241
Query: 148 AAWSAL-KRMPNLDS 161
AW AL +R P+ D+
Sbjct: 242 LAWQALAERGPSSDA 256
>gi|452953036|gb|EME58459.1| ribonuclease III [Amycolatopsis decaplanina DSM 44594]
Length = 248
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL +P Y +GP H F+ TV + G TKK+AE+ AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKAAE 229
Query: 148 AAWSAL 153
AW L
Sbjct: 230 TAWRQL 235
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL + +P Y GPDH F A+V G S TT ++AE AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGS-GTTKKEAEQKAA 228
Query: 62 EVALNVLS 69
E A LS
Sbjct: 229 ETAWRQLS 236
>gi|444432141|ref|ZP_21227300.1| ribonuclease III [Gordonia soli NBRC 108243]
gi|443886970|dbj|GAC69021.1| ribonuclease III [Gordonia soli NBRC 108243]
Length = 243
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 81 VLDETGI------YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP 134
++D G+ +K LQE + G P Y +GP H FT T +AG
Sbjct: 158 IIDRAGLLGAGLDWKTSLQELSAEQGQGPPQYQIASTGPDHDKEFTATAVIAGEELGTGV 217
Query: 135 AKTKKQAEKNAAIAAWSAL 153
+TKK+AE+ AA AW AL
Sbjct: 218 GRTKKEAEQKAAAHAWKAL 236
>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
gi|81373706|sp|Q5YS08.1|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
Length = 240
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT T + G + ++KK+AE+ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAG 230
Query: 148 AAWSAL 153
AA+ AL
Sbjct: 231 AAYQAL 236
>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
gi|7531192|sp|O69469.1|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
Length = 238
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT V + + +KK+AE+ AA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSKKEAEQKAAS 221
Query: 148 AAWSALKRMPNL 159
AAW AL + +
Sbjct: 222 AAWKALDVLGGV 233
>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
Length = 1181
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL---STRGPSRSLTAR 80
+EGP H P+F+ V + F S S + + A+ AAE A+ L +T + R
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 695
Query: 81 VLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA 135
+ E Y N L E A G +SGP H P F ++ G F A
Sbjct: 696 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAEKNAAIAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 756 HSKKQGKQEAADAALRVL 773
>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
sapiens]
gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
Length = 1181
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL---STRGPSRSLTAR 80
+EGP H P+F+ V + F S S + + A+ AAE A+ L +T + R
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 695
Query: 81 VLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA 135
+ E Y N L E A G +SGP H P F ++ G F A
Sbjct: 696 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAEKNAAIAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 756 HSKKQGKQEAADAALRVL 773
>gi|393214931|gb|EJD00423.1| hypothetical protein FOMMEDRAFT_169889 [Fomitiporia mediterranea
MF3/22]
Length = 172
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 25 EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDE 84
EG H P++ + + +GE + + S CT R A+ AA + +L +G T
Sbjct: 50 EGEAHVPQWTSICSIDGEEYGTGSACTR-RSADKEAAYQTMRMLEDKGVPLPSTRNYYP- 107
Query: 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKN 144
I+ + ++E + AG + + GP H P + C V L G+ G TKK A ++
Sbjct: 108 --IFMDYIREK-NLAGRIM--FEPFWRGPAHKPTWRCIVSLDGVEIAGGSGPTKKAAMED 162
Query: 145 AAIAA 149
A+I A
Sbjct: 163 ASINA 167
>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Nomascus leucogenys]
Length = 1234
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL---STRGPSRSLTAR 80
+EGP H P+F+ V + F S S + + A+ AAE A+ L +T + R
Sbjct: 690 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 748
Query: 81 VLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA 135
+ E Y N L E A G +SGP H P F ++ G F A
Sbjct: 749 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 808
Query: 136 KTKKQAEKNAAIAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 809 HSKKQGKQEAADAALRVL 826
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa]
gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYK++LQ + Q+ + LP+Y ++G DH P F A+V N F SPS ++ + A+ A
Sbjct: 1 MYKSKLQAVCQQRGWELPTYQVTKQGKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60
Query: 61 AEVALN 66
A++A N
Sbjct: 61 AKLAFN 66
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 138 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 148 AAW 150
+AW
Sbjct: 198 SAW 200
>gi|400975048|ref|ZP_10802279.1| ribonuclease III [Salinibacterium sp. PAMC 21357]
Length = 233
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K LQELA + P Y GPDH+ RF ASV +GE+ S ++ + AE AAA
Sbjct: 164 KTSLQELAAKMGRGAPDYRIEDSGPDHSKRFHASVVLSGEVI-STGIGSSKKHAEMAAAL 222
Query: 63 VALNVL 68
A +L
Sbjct: 223 EAWTLL 228
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE A + G P Y SGP H F +V L+G + +KK AE AA+
Sbjct: 164 KTSLQELAAKMGRGAPDYRIEDSGPDHSKRFHASVVLSGEVISTGIGSSKKHAEMAAALE 223
Query: 149 AWSALK 154
AW+ L+
Sbjct: 224 AWTLLQ 229
>gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
Length = 270
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE R GL P Y +GP H FT V LAG + +TKK AE+ AA
Sbjct: 187 WKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVYGRGAGRTKKAAEQEAAE 246
Query: 148 AAWSAL 153
AAW AL
Sbjct: 247 AAWHAL 252
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIF 44
+K LQEL R P+Y GPDHA F A+V G ++
Sbjct: 187 WKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVY 229
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELA-GMNFTGEPAKTKKQAEKNAAI 147
K LQE+A R GL P Y SGP H F V + + TGE +KKQAE AA+
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVRTTGE-GSSKKQAEMTAAL 226
Query: 148 AAWSALK 154
AW+ L+
Sbjct: 227 EAWTRLE 233
>gi|357410945|ref|YP_004922681.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
Length = 274
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y GPDH F A+ G + + + + ++AE AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGT-GRSKKEAEQQAA 232
Query: 62 EVALNVLS 69
E A +S
Sbjct: 233 ESAWREIS 240
>gi|339500023|ref|YP_004698058.1| ribonuclease 3 [Spirochaeta caldaria DSM 7334]
gi|338834372|gb|AEJ19550.1| Ribonuclease 3 [Spirochaeta caldaria DSM 7334]
Length = 249
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE + N P YT + R+GP H +F V + G+ + K KK+AE+ AA
Sbjct: 179 YKTLLQEKCQQLYKNYPTYTLLKRTGPDHERMFWVEVHVNGVAYGPGIGKNKKEAEQEAA 238
Query: 147 IAAWSAL 153
A+ A+
Sbjct: 239 KLAYKAI 245
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE Q+ N P+YT + R GPDH F V+ NG + P ++AE A
Sbjct: 179 YKTLLQEKCQQLYKNYPTYTLLKRTGPDHERMFWVEVHVNGVAY-GPGIGKNKKEAEQEA 237
Query: 61 AEVALNVLS 69
A++A ++
Sbjct: 238 AKLAYKAIT 246
>gi|356511271|ref|XP_003524350.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1180
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
YKN LQ +RAG + P Y T F TV G+NF G+P +KK AEK+AA
Sbjct: 1083 YKNHLQAFLNRAGHDSPTYKTKELKNNQ---FRSTVIFNGLNFVGQPCSSKKLAEKSAAA 1139
Query: 148 AAWSALK 154
A LK
Sbjct: 1140 EALLWLK 1146
>gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola potens JR]
gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR]
Length = 245
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQEL Q+ N +Y I EGPDH F A V +G+I+ T ++AE AA
Sbjct: 168 YKTELQELVQQKADNTLTYAIIGEEGPDHNKVFTAGVYCHGKIW-GVGKGRTKKEAEQAA 226
Query: 61 AEVAL-------NVLS 69
A AL NVLS
Sbjct: 227 AHDALEKIKNGYNVLS 242
>gi|418056705|ref|ZP_12694757.1| Ribonuclease 3 [Hyphomicrobium denitrificans 1NES1]
gi|353209322|gb|EHB74727.1| Ribonuclease 3 [Hyphomicrobium denitrificans 1NES1]
Length = 235
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K+ LQE AQ LP YT + R+GPDHAPRF A V G + + R AE AAA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRA-PAQGEGASKRIAEQAAA 219
Query: 62 EVALN 66
L
Sbjct: 220 TALLT 224
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A GL LP YT V R GP H P FT V +AG +K+ AE+ AA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAAT 220
Query: 148 A 148
A
Sbjct: 221 A 221
>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
Length = 246
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
LL++ A R GL P Y T SGP H P FT TV L G + TKK+AE +AA A
Sbjct: 185 LLEKIAGR-GLGEPEYNTTISGPAHDPHFTSTVSLQGKVWGHGEGHTKKEAEHHAAREAN 243
Query: 151 SAL 153
AL
Sbjct: 244 DAL 246
>gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
Length = 235
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K+ LQE AQ LP YT + R+GPDHAPRF A V G + + R AE AAA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRA-PAQGEGASKRIAEQAAA 219
Query: 62 EVALN 66
L
Sbjct: 220 TALLT 224
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A GL LP YT V R GP H P FT V +AG +K+ AE+ AA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAAT 220
Query: 148 A 148
A
Sbjct: 221 A 221
>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 246
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE R G VY + SGP H F VE+ G+ + K+KK AE++AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYRLLSESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAA 235
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK++LQE Q++ LP Y +G H +FK++V +GE F S ++ AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQ 93
+VA + L R + + D+T +++ + Q
Sbjct: 99 KVAYDTLLERKETET------DDTDVFELIDQ 124
>gi|426331795|ref|XP_004026879.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Gorilla gorilla gorilla]
Length = 1181
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTA---- 79
+EGP H P+F+ V + F S S + + A+ AAE A+ L S S+ +
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEA-SNSMASDNQV 694
Query: 80 RVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP 134
R + E Y N L E A G +SGP H P F ++ G F
Sbjct: 695 RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVC 754
Query: 135 AKTKKQAEKNAAIAAWSAL 153
A +KKQ ++ AA AA L
Sbjct: 755 AHSKKQGKQEAADAALRVL 773
>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
Length = 245
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE R G VY + SGP H F VE+ G+ + K+KK AE++AA
Sbjct: 176 YKTLLQEYVQRDGDKHTVYRLLSESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAA 235
>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
gi|122499604|sp|Q28V23.1|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
Length = 227
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G+ P YT V RSGP H P+F V L+ AK K+QAE+ AA
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAA 217
>gi|351724731|ref|NP_001235276.1| uncharacterized protein LOC100306453 [Glycine max]
gi|255628583|gb|ACU14636.1| unknown [Glycine max]
Length = 162
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNG 41
+YKNQLQ Q++ +LP Y+ EGP HA RFK V +G
Sbjct: 119 LYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDG 159
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNF 130
+YKN LQ + L+LPVY++ GP H F C V + G N
Sbjct: 119 LYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDGTNL 162
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK +LQE + G VYT + SGP H IF V + G + K+KK+AE+NAA
Sbjct: 176 YKTMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEVRIEGKAYGSGTGKSKKEAEQNAA 235
>gi|449489816|ref|XP_002188254.2| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Taeniopygia guttata]
Length = 1169
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 69/180 (38%), Gaps = 34/180 (18%)
Query: 6 LQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQ-AEHAAAEVA 64
L E Q+S + +EGP H PRF V +IF P+ ++ A+ AAEVA
Sbjct: 578 LMEYGQKSGNIIEFQLLSQEGPPHDPRFSYCVKMGDQIF--PAVVGNSKKGAKQMAAEVA 635
Query: 65 LNVLS--------------------------TRGPSRSLTARVLDETGIYKNL-----LQ 93
+ +LS T S+ + + + E Y N+ L
Sbjct: 636 VKILSGESVPHVLHEQPVVEPQSDQSMHNIATPDESKVVKMKGVGELIKYLNVNPVSGLL 695
Query: 94 ETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
E A G +SGP H P F ++ G F A KKQ ++ AA AA L
Sbjct: 696 EYARSNGFAAEFKLIDQSGPPHDPKFVYQAKVGGRWFPAVTAHNKKQGKQEAADAALRVL 755
>gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I]
gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I]
Length = 225
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 59 AAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVP 117
AAAE+ L + TR AR K LQE A G +P+Y V RSGP H P
Sbjct: 135 AAAEMILRLWGTRIHQVETDAR------DAKTSLQEWAQARGQQVPIYVEVSRSGPDHAP 188
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
+FT L A +K+QAE+ AA A
Sbjct: 189 VFTIAARLQDGTEAQATAGSKRQAEQAAAKA 219
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ Q+ +LP Y +RE GPDH F+ + G + + ++AE A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQG-VMRGIGRGRSKKEAEQMA 225
Query: 61 AEVALNVLS 69
A+ AL L+
Sbjct: 226 AKEALTQLA 234
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 74 SRSLTARVLDETGI-------------YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
SR T +VL+E + YK LQE + +LP Y TVR SGP H +F
Sbjct: 140 SRKFTLQVLEEELLATRAEQARPGMEDYKTQLQEVCQKRYESLPQYETVRESGPDHEKVF 199
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ + G+ ++KK+AE+ AA A + L
Sbjct: 200 EVELTIQGVMRGIGRGRSKKEAEQMAAKEALTQL 233
>gi|375094027|ref|ZP_09740292.1| ribonuclease III [Saccharomonospora marina XMU15]
gi|374654760|gb|EHR49593.1| ribonuclease III [Saccharomonospora marina XMU15]
Length = 243
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL +P Y +GP H F+ V + G + TKK+AE+ AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSAVVFVGGRDLGHGEGTTKKEAEQKAAE 229
Query: 148 AAWSAL 153
AW L
Sbjct: 230 FAWREL 235
>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
Length = 886
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL---STRGPSRSLTAR 80
+EGP H P+F+ V + F S S + + A+ AAE A+ L +T + R
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 400
Query: 81 VLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA 135
+ E Y N L E A G +SGP H P F ++ G F A
Sbjct: 401 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 460
Query: 136 KTKKQAEKNAAIAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 461 HSKKQGKQEAADAALRVL 478
>gi|407647467|ref|YP_006811226.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407310351|gb|AFU04252.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 237
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT T + G + ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTMIGGQAYGQGVGRSKKEAEQKAAG 227
Query: 148 AAWSAL 153
A+ AL
Sbjct: 228 TAYQAL 233
>gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
gi|378973322|ref|YP_005221928.1| ribonuclease III [Treponema pallidum subsp. pertenue str. SamoaD]
gi|378974389|ref|YP_005222997.1| ribonuclease III [Treponema pallidum subsp. pertenue str. Gauthier]
gi|378975447|ref|YP_005224057.1| ribonuclease III [Treponema pallidum subsp. pallidum DAL-1]
gi|378982298|ref|YP_005230605.1| ribonuclease III [Treponema pallidum subsp. pertenue str. CDC2]
gi|384422299|ref|YP_005631658.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago]
gi|408502663|ref|YP_006870107.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Mexico A]
gi|6094109|sp|O83787.1|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238689343|sp|B2S448.1|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago]
gi|374677647|gb|AEZ57940.1| ribonuclease III [Treponema pallidum subsp. pertenue str. SamoaD]
gi|374678717|gb|AEZ59009.1| ribonuclease III [Treponema pallidum subsp. pertenue str. CDC2]
gi|374679786|gb|AEZ60077.1| ribonuclease III [Treponema pallidum subsp. pertenue str. Gauthier]
gi|374680847|gb|AEZ61137.1| ribonuclease III [Treponema pallidum subsp. pallidum DAL-1]
gi|408476026|gb|AFU66791.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Mexico A]
Length = 254
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQ LA + + P YT + R GPDH+ RF V F P Y T+ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALNVLS 69
A +A LS
Sbjct: 241 ARLAWEQLS 249
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+ LQ AH+ + P YT V R+GP H F V + F +KK AE+ AA
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAA 241
Query: 147 IAAWSAL 153
AW L
Sbjct: 242 RLAWEQL 248
>gi|356527870|ref|XP_003532529.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1177
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
YKN LQ +RAG + P Y T F TV G+NF G+P +KK AEK+AA
Sbjct: 1080 YKNHLQAFLNRAGHDSPTYKTKELKNNQ---FRTTVVFNGLNFVGQPCSSKKLAEKSAAA 1136
Query: 148 AAWSALK 154
A +K
Sbjct: 1137 EALLWIK 1143
>gi|451337399|ref|ZP_21907944.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
gi|449419994|gb|EMD25505.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
Length = 248
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL +P Y +GP H F+ TV + G TKK+AE+ +A
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKSAE 229
Query: 148 AAWSAL 153
AW L
Sbjct: 230 TAWRQL 235
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL + +P Y GPDH F A+V G S TT ++AE +A
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGS-GTTKKEAEQKSA 228
Query: 62 EVALNVLS 69
E A LS
Sbjct: 229 ETAWRQLS 236
>gi|338738021|ref|YP_004674983.1| ribonuclease III [Hyphomicrobium sp. MC1]
gi|337758584|emb|CCB64409.1| ribonuclease III [Hyphomicrobium sp. MC1]
Length = 235
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K+ LQE AQ LP YT + R GPDHAPRF A V G + + R AE AAA
Sbjct: 161 KSALQEWAQGQGLALPRYTVVARNGPDHAPRFTAEVLIAGRA-PAQGEGASKRIAEQAAA 219
Query: 62 EVAL 65
L
Sbjct: 220 SALL 223
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A GL LP YT V R+GP H P FT V +AG PA+ + +++ A
Sbjct: 161 KSALQEWAQGQGLALPRYTVVARNGPDHAPRFTAEVLIAGRA----PAQGEGASKRIAEQ 216
Query: 148 AAWSAL 153
AA SAL
Sbjct: 217 AAASAL 222
>gi|374292002|ref|YP_005039037.1| RNase III [Azospirillum lipoferum 4B]
gi|357423941|emb|CBS86804.1| RNase III [Azospirillum lipoferum 4B]
Length = 261
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A G LP Y + RSGP H P+F V +AGM+ +K+ AEK AA
Sbjct: 190 KTTLQEWAQGRGKPLPRYELIERSGPAHEPLFVVAVHVAGMDPVNGSGSSKRIAEKKAAS 249
Query: 148 A 148
A
Sbjct: 250 A 250
>gi|224097532|ref|XP_002310975.1| predicted protein [Populus trichocarpa]
gi|222850795|gb|EEE88342.1| predicted protein [Populus trichocarpa]
Length = 1020
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P + K+QAE++AA
Sbjct: 958 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKRNKQQAERDAA 1012
Query: 147 IAAWSAL 153
I A + L
Sbjct: 1013 IEALAWL 1019
>gi|168058998|ref|XP_001781492.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667033|gb|EDQ53672.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1100
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LLQ RAG PVY T R G+ ++ ++E+ G FTG+PA +KK AEKN +
Sbjct: 1029 KGLLQTLLLRAGKKPPVYRT-RMVKGN--LYQSSIEVKGRGFTGDPASSKKVAEKNVSAM 1085
Query: 149 AWSAL 153
A L
Sbjct: 1086 ALEWL 1090
>gi|357384164|ref|YP_004898888.1| ribonuclease III [Pelagibacterium halotolerans B2]
gi|351592801|gb|AEQ51138.1| ribonuclease III [Pelagibacterium halotolerans B2]
Length = 235
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A GL P Y T RSGP H P+FT +V + G +KK AE AA
Sbjct: 163 KTALQEWAQAKGLEPPAYVETARSGPDHAPVFTISVSVRGFEAITATGTSKKLAEHQAA 221
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 3 KNQLQELAQRSCFNLPSYT-CIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQ-AEHAA 60
K LQE AQ P+Y R GPDHAP F SV+ G FE+ + T ++ AEH A
Sbjct: 163 KTALQEWAQAKGLEPPAYVETARSGPDHAPVFTISVSVRG--FEAITATGTSKKLAEHQA 220
Query: 61 AE 62
AE
Sbjct: 221 AE 222
>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
Length = 246
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE R G VY + SGP H F VE+ G+ + K+KK AE++AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
>gi|338706758|ref|YP_004673526.1| ribonuclease III [Treponema paraluiscuniculi Cuniculi A]
gi|335344819|gb|AEH40735.1| ribonuclease III [Treponema paraluiscuniculi Cuniculi A]
Length = 254
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQ LA + + P YT + R GPDH+ RF V F P Y T+ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALNVLS 69
A +A LS
Sbjct: 241 ARLAWEQLS 249
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+ LQ AH+ + P YT V R+GP H F V + F +KK AE+ AA
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAA 241
Query: 147 IAAWSAL 153
AW L
Sbjct: 242 RLAWEQL 248
>gi|377564338|ref|ZP_09793660.1| ribonuclease III [Gordonia sputi NBRC 100414]
gi|377528520|dbj|GAB38825.1| ribonuclease III [Gordonia sputi NBRC 100414]
Length = 261
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A G P Y +GP H FT +AG +TKK+AE+ AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQKAAS 246
Query: 148 AAWSAL 153
AW AL
Sbjct: 247 LAWQAL 252
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQELA + P Y GPDH+ F A GE T ++AE AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEEL-GEGVGRTKKEAEQKAA 245
Query: 62 EVALNVLSTR 71
+A L+ R
Sbjct: 246 SLAWQALTER 255
>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
Length = 237
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK +LQE + L + YT + SGP H+ FT V + G + AKTKK++E+ +A
Sbjct: 166 YKTILQEYVSKIKLGVIEYTVLDSSGPSHLKTFTSAVIIDGKQYGSGTAKTKKESEQLSA 225
Query: 147 IAAWSAL 153
AA L
Sbjct: 226 KAALEKL 232
>gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510]
gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510]
Length = 261
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A G LP Y T RSGP H P+F V +AGM+ +K+ AEK AA
Sbjct: 190 KTTLQEWAQGRGKPLPRYELTERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAAS 249
Query: 148 A 148
A
Sbjct: 250 A 250
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQEL QR + Y+ + E GP H F + V+ NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 61 AEVALNVLSTRG 72
A++AL L T G
Sbjct: 233 AQMALQKLKTIG 244
>gi|403721061|ref|ZP_10944286.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
gi|403207401|dbj|GAB88617.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
Length = 244
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + G P Y +GP H FT +AG + +TKK+AE+ AA
Sbjct: 172 WKTSLQELSAEGGYGPPHYQITSTGPDHNKEFTAVAVVAGESLGQGTGRTKKEAEQKAAA 231
Query: 148 AAWSAL 153
AW AL
Sbjct: 232 LAWQAL 237
>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
Length = 247
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE R G VY+ + SGP H F V + G+ + K+KK AE++AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQEL QR + Y ++E GP H F + V+ NGE + ++AE A
Sbjct: 175 FKSQLQELIQRDGTGMIEYRVLQEKGPAHNKEFVSKVSLNGEEL-GVGTGKSKKEAEQHA 233
Query: 61 AEVALNVLSTR 71
A++AL VL +
Sbjct: 234 AQMALGVLKAK 244
>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 247
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE R G VY+ + SGP H F V + G+ + K+KK AE++AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
>gi|395845298|ref|XP_003795378.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Otolemur garnettii]
Length = 1136
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRS------- 76
+EGP H P+F+ V + F + S + + A+ AAE A+ L S
Sbjct: 585 KEGPAHDPKFQYCVAVGAQTFPTVS-APSKKVAKQMAAEEAIKALHGEATSSDDQVGLFS 643
Query: 77 ---LTARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGM 128
T R ++E Y N L E A G +SGP H P F ++ G
Sbjct: 644 CSKHTVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGR 703
Query: 129 NFTGEPAKTKKQAEKNAAIAAWSAL 153
F A +KKQ ++ AA AA L
Sbjct: 704 WFPAVCAHSKKQGKQEAADAALRVL 728
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y GP H +FT V + G + +KK+AE+ AA
Sbjct: 170 WKTSLQELTAAQHLGVPFYDLSERGPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQ 229
Query: 148 AAWSALKR 155
AW ++R
Sbjct: 230 EAWLRIRR 237
>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
Length = 249
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A GL +P Y GP H +F V L+G +TKK+AE+NAA
Sbjct: 164 WKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLSGSARGTGTGRTKKEAEQNAAA 223
Query: 148 AAWSALK 154
AA++ L+
Sbjct: 224 AAYTGLQ 230
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNG 41
+K LQELA +P Y EGPDHA F A V +G
Sbjct: 164 WKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLSG 203
>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
Length = 247
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE R G VY+ + SGP H F V + G+ + K+KK AE++AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
>gi|449275316|gb|EMC84189.1| Double-stranded RNA-binding protein Staufen like protein 2 [Columba
livia]
Length = 558
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 33/185 (17%)
Query: 18 PSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR- 75
P Y + E GP HA F + + +E+ +++++A+HAAA ALN + P+
Sbjct: 59 PQYKLLNERGPAHAKMFTVQLTLGEQTWEAEG--SSIKKAQHAAASKALNETTLPKPTPR 116
Query: 76 -----------SLTARV--------LDETGIYKNLLQETA--HRAGLNLPVYTTVRSGPG 114
S+T V E IY+ L + +RA N R
Sbjct: 117 PPKNNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPIPNYRANYNFRGMYNQRY--- 173
Query: 115 HVP---IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSL-TNKETDKP 170
H P IF + + F GE KT++ A NAA+ A AL+ P + L N ET K
Sbjct: 174 HCPVPKIFYVQLTVGNSEFFGE-GKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKE 232
Query: 171 EEQDQ 175
E+D+
Sbjct: 233 SEEDK 237
>gi|242032961|ref|XP_002463875.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor]
gi|241917729|gb|EER90873.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor]
Length = 1148
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG P Y T H+ F VE GM F G+P + K+ AE++AA
Sbjct: 1045 KSLLQTLLMRAGHTPPKYKT-----KHLKTNEFRAMVEFKGMQFVGKPKRNKQLAERDAA 1099
Query: 147 IAAWSALKRMPNLDSLTNKETDKPEEQDQAIVARVLSNFRAKDDNRNNNARR 198
I A L + + + D P + ++ ++L+ R + ++NN+ +R
Sbjct: 1100 IEALGWLTQTSGVKPQDENDDDSPLDLTDGML-KLLT--RPRRHSKNNSRKR 1148
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A L LPVYTTV ++GP H P FT V + G+ K+K+ AE+ AA
Sbjct: 160 KTGLQEWAQGRRLPLPVYTTVEQTGPAHAPEFTVEVVVEGLAPQRASGKSKRLAEQLAAA 219
Query: 148 AAWSAL 153
A A+
Sbjct: 220 AMLEAI 225
>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 535
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE AQ PSY IRE GPDH F A N E F S + + AE A
Sbjct: 463 YKTRLQEYAQSKLRITPSYELIREFGPDHEKTFVAQATVNKE-FTSQGKGRSKKAAEQDA 521
Query: 61 AEVALNVLSTRGPS 74
A L +L PS
Sbjct: 522 AREVLILLGQEDPS 535
>gi|441509918|ref|ZP_20991830.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
gi|441445933|dbj|GAC49791.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
Length = 261
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A G P Y +GP H FT +AG +TKK+AE+ AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGIGRTKKEAEQKAAS 246
Query: 148 AAWSAL 153
AW AL
Sbjct: 247 LAWQAL 252
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQELA + P Y GPDH+ F A GE T ++AE AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEEL-GEGIGRTKKEAEQKAA 245
Query: 62 EVALNVLSTRGPS 74
+A L+ RG +
Sbjct: 246 SLAWQALTERGAA 258
>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|189043370|sp|A0LGM1.1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
Length = 242
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQEL Q P Y R EGPDH F +V G++ S + + A+ AA
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGS-GKSKKDAQQAA 226
Query: 61 AEVALNVLS 69
AE AL +++
Sbjct: 227 AEKALQIIA 235
>gi|333997795|ref|YP_004530407.1| ribonuclease III [Treponema primitia ZAS-2]
gi|333741278|gb|AEF86768.1| ribonuclease III [Treponema primitia ZAS-2]
Length = 283
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 62 EVALNVLSTR-GPSRSLTARVLDETGI--YKNLLQETAHRAGLNLPVYTTV-RSGPGHVP 117
+ A N + R GP RVLD YK+LLQE N PVY + RSGP H
Sbjct: 179 KAAFNFIRHRMGPE---ITRVLDNRHYRDYKSLLQELTQGLYRNYPVYRVLKRSGPEHDR 235
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
F V + G F + KK AE+ AA A+ +
Sbjct: 236 FFWIEVSVEGKTFGPGMGRNKKAAEQEAARIAYEEI 271
>gi|300681522|emb|CBH32617.1| ATP binding protein, putative, expressed [Triticum aestivum]
Length = 1072
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
KN LQ RAG + P Y T + +F TVE GM F G+P KK AEK+AA
Sbjct: 972 KNQLQTLLTRAGHDNPSYKTKQIKN---TLFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1028
Query: 149 AWSAL 153
A S L
Sbjct: 1029 AISWL 1033
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE QR LP Y + + GPDH F +V G+I+ S + ++AE A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGS-GKSKKEAEQKA 223
Query: 61 AEVALNVLS 69
A+ AL+ L+
Sbjct: 224 AKDALSRLA 232
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 72 GPSRSLTARVLDETGI--YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGM 128
G RS+ + + E I YK LQE R LPVY + + GP H F V + G
Sbjct: 147 GHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGK 206
Query: 129 NFTGEPAKTKKQAEKNAAIAAWSALKR 155
+ K+KK+AE+ AA A S L R
Sbjct: 207 IYGEGSGKSKKEAEQKAAKDALSRLAR 233
>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
Length = 237
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 67 VLSTRGPSRSLTARVLDET--GIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTV 123
VL+ GP L RV+D YK +LQE P Y T+ SGP H F+ ++
Sbjct: 145 VLALLGP---LDERVIDRAPRRDYKTMLQERVQEDLRLTPRYRTIDESGPDHDKTFSVSI 201
Query: 124 ELAGMNFTGEPAKTKKQAEKNAA---IAAWSA 152
E+ K+KK+AE+NAA + W+A
Sbjct: 202 EINDRQLAMGAGKSKKEAEQNAARRGLTNWNA 233
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE QR LP Y + + GPDH F +V G+I+ S + ++AE A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGS-GKSKKEAEQKA 223
Query: 61 AEVALNVLS 69
A+ AL+ L+
Sbjct: 224 AKDALSRLA 232
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 72 GPSRSLTARVLDETGI--YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGM 128
G RS+ + + E I YK LQE R LPVY + + GP H F V + G
Sbjct: 147 GHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGK 206
Query: 129 NFTGEPAKTKKQAEKNAAIAAWSALKR 155
+ K+KK+AE+ AA A S L R
Sbjct: 207 IYGEGSGKSKKEAEQKAAKDALSRLAR 233
>gi|242014706|ref|XP_002428026.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
humanus corporis]
gi|212512545|gb|EEB15288.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
humanus corporis]
Length = 669
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 108 TVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
+V++GPG+ PIFT TV++ G+ + G K KK A+ NAA AA S +++
Sbjct: 63 SVQNGPGNSPIFTTTVDINGVRYIGR-GKNKKLAKHNAAEAALSGIQQ 109
>gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus]
gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus]
Length = 302
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE + GL LPVY + + GP H P T + G+ E A ++ QAEK AA
Sbjct: 5 KGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVI-EAASSRAQAEKLAAA 63
Query: 148 AAWSALKRM 156
+ +K +
Sbjct: 64 TLYEKMKHL 72
>gi|378550823|ref|ZP_09826039.1| hypothetical protein CCH26_12079 [Citricoccus sp. CH26A]
Length = 256
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K +QE A L Y +GP H +FT T+ + G+++ +KK+AE+ AA
Sbjct: 175 WKTFIQEAAAGGNLGAIEYRMESTGPDHDKVFTATLVIGGVDYASASGGSKKEAERLAAA 234
Query: 148 AAW 150
+W
Sbjct: 235 DSW 237
>gi|416999129|ref|ZP_11939798.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333977282|gb|EGL78141.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 246
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE R G VY + SGP H F VE+ G+ + K+KK AE++AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHDKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
>gi|451944546|ref|YP_007465182.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
gi|451903933|gb|AGF72820.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
Length = 249
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L++PVY + +GP H FT TV +AG KK AE+ +A
Sbjct: 177 WKTTLQERLAELRLDMPVYASTSTGPEHDLTFTATVSVAGQLLGTGTGPNKKLAEQESAH 236
Query: 148 AAWSALK 154
A+ AL+
Sbjct: 237 QAYRALR 243
>gi|326917772|ref|XP_003205170.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like, partial [Meleagris gallopavo]
Length = 479
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 33/185 (17%)
Query: 18 PSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR- 75
P Y + E GP HA F + + +E+ +++++A+HAAA ALN + P+
Sbjct: 96 PQYKLLNERGPAHAKMFTVQLTLGEQTWEAEG--SSIKKAQHAAASKALNETTLPKPTPR 153
Query: 76 -----------SLTARV--------LDETGIYKNLLQETA--HRAGLNLPVYTTVRSGPG 114
S+T V E IY+ L + +RA N R
Sbjct: 154 PPKNNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPIPNYRANYNFRGMYNQRY--- 210
Query: 115 HVP---IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSL-TNKETDKP 170
H P IF + + F GE KT++ A NAA+ A AL+ P + L N ET K
Sbjct: 211 HCPVPKIFYVQLTVGNSEFFGE-GKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKE 269
Query: 171 EEQDQ 175
E+D+
Sbjct: 270 TEEDK 274
>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
Length = 232
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 41 GEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAG 100
G IF+ Y T A VAL L G L ++ TG YK +LQE
Sbjct: 129 GAIFKDSDYYT--------AKNVALKFLL--GKINKLEE--IEGTGDYKTILQEFVQGKY 176
Query: 101 LNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
+P Y +R+ GP H +F V + K+KK+AEK+AA A LK+
Sbjct: 177 KKMPEYKLLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEKLKK 232
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE QR LP Y + + GPDH F +V G+I+ S + ++AE A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGS-GRSKKEAEQKA 223
Query: 61 AEVALNVLS 69
A+ AL+ L+
Sbjct: 224 AKDALSRLA 232
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 72 GPSRSLTARVLDETGI--YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGM 128
G RS+ + + E I YK LQE R LPVY + + GP H F V + G
Sbjct: 147 GHFRSVIEQTVQEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGK 206
Query: 129 NFTGEPAKTKKQAEKNAAIAAWSALKR 155
+ ++KK+AE+ AA A S L R
Sbjct: 207 IYGEGSGRSKKEAEQKAAKDALSRLAR 233
>gi|441519178|ref|ZP_21000876.1| ribonuclease III [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441453956|dbj|GAC58837.1| ribonuclease III [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 240
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y +GP H FT +AG +TKK+AE+ AA
Sbjct: 163 WKTSLQELTAARSLGVPHYQITSTGPDHDKEFTAEAVVAGRALGAGVGRTKKEAEQKAAA 222
Query: 148 AAWSAL 153
AWS L
Sbjct: 223 LAWSTL 228
>gi|255546785|ref|XP_002514451.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223546447|gb|EEF47947.1| ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 1129
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P K K+ AE++AA
Sbjct: 1031 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1085
Query: 147 IAAWSAL 153
I A + L
Sbjct: 1086 IEALAWL 1092
>gi|225470788|ref|XP_002269787.1| PREDICTED: probable ATP-dependent RNA helicase DHX36 [Vitis vinifera]
Length = 1136
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P K K+ AE++AA
Sbjct: 1038 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1092
Query: 147 IAAWSAL 153
I A + L
Sbjct: 1093 IEALAWL 1099
>gi|296081073|emb|CBI18267.3| unnamed protein product [Vitis vinifera]
Length = 1162
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P K K+ AE++AA
Sbjct: 1038 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1092
Query: 147 IAAWSAL 153
I A + L
Sbjct: 1093 IEALAWL 1099
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQELA F P Y EGPDH F A V + E+ + ++AE AA
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVL-GDGNGRSKKEAEQKAA 231
Query: 62 EVALNVLSTR 71
E A L+ R
Sbjct: 232 EQAWKELTRR 241
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE A P Y GP H +FT V ++ ++KK+AE+ AA
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSKKEAEQKAAE 232
Query: 148 AAWSALKRMPN 158
AW L R N
Sbjct: 233 QAWKELTRRAN 243
>gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
Length = 257
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 32 RFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNV---LSTRGPSRSLTARVLDETGIY 88
R K S+ +G ES L+ A V L++ L TR P L LD +
Sbjct: 123 RDKPSILADG--MESILGAIHLQHGIDTARRVVLDLFDDLLTRAP---LLGAGLD----W 173
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE G +PVY +GP H FT TV ++ ++KK+AE+ AA +
Sbjct: 174 KTSLQELTAEHGAGVPVYEITATGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAASS 233
Query: 149 AWSAL 153
AW +
Sbjct: 234 AWKTM 238
>gi|449117995|ref|ZP_21754410.1| ribonuclease 3 [Treponema denticola H-22]
gi|448949886|gb|EMB30710.1| ribonuclease 3 [Treponema denticola H-22]
Length = 246
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVA 64
A+VA
Sbjct: 231 AKVA 234
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYEDL 238
>gi|449128122|ref|ZP_21764369.1| ribonuclease 3 [Treponema denticola SP33]
gi|448941455|gb|EMB22356.1| ribonuclease 3 [Treponema denticola SP33]
Length = 246
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALNVL 68
A+VA L
Sbjct: 231 AKVAYEGL 238
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYEGL 238
>gi|414876601|tpg|DAA53732.1| TPA: hypothetical protein ZEAMMB73_195625 [Zea mays]
Length = 1381
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTT--VRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG + P Y T ++S +F TVE GM F G+P KK AEK+AA
Sbjct: 1283 KNQLQTYLTRAGHSNPTYKTKQIKS-----YLFRSTVEFNGMQFVGQPCANKKLAEKDAA 1337
Query: 147 IAAWSAL 153
A + L
Sbjct: 1338 SEALNWL 1344
>gi|414167173|ref|ZP_11423402.1| ribonuclease 3 [Afipia clevelandensis ATCC 49720]
gi|410890990|gb|EKS38788.1| ribonuclease 3 [Afipia clevelandensis ATCC 49720]
Length = 268
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL PVY V R+GP H P F VEL G+ +K+ AEK AA
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAEKLAAT 254
Query: 148 A 148
A
Sbjct: 255 A 255
>gi|449109836|ref|ZP_21746469.1| ribonuclease 3 [Treponema denticola ATCC 33520]
gi|448958289|gb|EMB39022.1| ribonuclease 3 [Treponema denticola ATCC 33520]
Length = 246
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALNVL 68
A+VA L
Sbjct: 231 AKVAYEDL 238
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYEDL 238
>gi|449120559|ref|ZP_21756944.1| ribonuclease 3 [Treponema denticola H1-T]
gi|449122966|ref|ZP_21759297.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947062|gb|EMB27912.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947954|gb|EMB28797.1| ribonuclease 3 [Treponema denticola H1-T]
Length = 246
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVA 64
A+VA
Sbjct: 231 AKVA 234
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYEDL 238
>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|422342862|ref|ZP_16423801.1| ribonuclease 3 [Treponema denticola F0402]
gi|449103044|ref|ZP_21739791.1| ribonuclease 3 [Treponema denticola AL-2]
gi|449106930|ref|ZP_21743591.1| ribonuclease 3 [Treponema denticola ASLM]
gi|449112349|ref|ZP_21748903.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|449115432|ref|ZP_21751896.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|451968629|ref|ZP_21921858.1| ribonuclease 3 [Treponema denticola US-Trep]
gi|81412559|sp|Q73NX5.1|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
gi|448953209|gb|EMB34004.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|448955811|gb|EMB36575.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|448963842|gb|EMB44517.1| ribonuclease 3 [Treponema denticola ASLM]
gi|448965846|gb|EMB46507.1| ribonuclease 3 [Treponema denticola AL-2]
gi|451702642|gb|EMD57044.1| ribonuclease 3 [Treponema denticola US-Trep]
Length = 246
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVA 64
A+VA
Sbjct: 231 AKVA 234
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYENL 238
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQE + +PVY V GP H IF + +A F K+KKQAE+NAA
Sbjct: 179 YKTRLQEVSQEKFRAVPVYRLVDEKGPDHDKIFHVEIIIAQQLFGNGEGKSKKQAEQNAA 238
Query: 147 IAAWSAL 153
A + L
Sbjct: 239 RMALAKL 245
>gi|414173889|ref|ZP_11428516.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
gi|410890523|gb|EKS38322.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
Length = 268
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL PVY V R+GP H P F VEL G+ +K+ AEK AA
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAEKLAAT 254
Query: 148 A 148
A
Sbjct: 255 A 255
>gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1]
gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1]
Length = 368
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 294 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLESAEGVGGSKRAAEKVAA 352
>gi|242056673|ref|XP_002457482.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
gi|241929457|gb|EES02602.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
Length = 1390
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTT--VRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG + P Y T ++S +F TVE GM F G+P KK AEK+AA
Sbjct: 1291 KNQLQTFLTRAGHSNPTYKTKQIKS-----YLFRSTVEFNGMQFVGQPCANKKLAEKDAA 1345
Query: 147 IAAWSAL 153
A + L
Sbjct: 1346 SEALNWL 1352
>gi|358348435|ref|XP_003638252.1| ATP-dependent RNA helicase A-like protein, partial [Medicago
truncatula]
gi|355504187|gb|AES85390.1| ATP-dependent RNA helicase A-like protein, partial [Medicago
truncatula]
Length = 333
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P + K+ AE++AA
Sbjct: 234 KSLLQTLLMRAGHSAPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAA 288
Query: 147 IAAWSAL 153
I A + L
Sbjct: 289 IEALAWL 295
>gi|338974857|ref|ZP_08630213.1| ribonuclease III [Bradyrhizobiaceae bacterium SG-6C]
gi|338231952|gb|EGP07086.1| ribonuclease III [Bradyrhizobiaceae bacterium SG-6C]
Length = 268
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL PVY V R+GP H P F VEL G+ +K+ AEK AA
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAEKLAAT 254
Query: 148 A 148
A
Sbjct: 255 A 255
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE A R + P Y+ +GP H FT TV + + TG +KKQAE AA+
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRVGDVVTTG-TGSSKKQAEMAAALT 221
Query: 149 AWSAL 153
AW L
Sbjct: 222 AWREL 226
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K LQE+A R P+Y+ GPDH RF A+V G++ + + ++ +QAE AAA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRV-GDVVTTGT-GSSKKQAEMAAAL 220
Query: 63 VALNVLSTR 71
A L R
Sbjct: 221 TAWRELDAR 229
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQEL QR + Y+ + E GP H F + V+ NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 61 AEVALNVLST 70
A++AL L T
Sbjct: 233 AQMALQKLKT 242
>gi|397670033|ref|YP_006511568.1| ribonuclease III [Propionibacterium propionicum F0230a]
gi|395142645|gb|AFN46752.1| ribonuclease III [Propionibacterium propionicum F0230a]
Length = 213
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 59 AAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPI 118
AAA +L R S L D YK LQE +GL P Y V GP H I
Sbjct: 119 AAACFVHALLDERIASSELKGHYTD----YKTALQEYCAHSGLEPPRYEIVGEGPDHQRI 174
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
FT T + G A +KK+AE+ AA A +L
Sbjct: 175 FTATAMVGGKAVGSGVASSKKRAEQLAAHEACRSL 209
>gi|381397762|ref|ZP_09923171.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
gi|380774890|gb|EIC08185.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
Length = 230
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE A R L P Y GP H +FT TV + TG +KKQAE AA+
Sbjct: 163 KTSLQELAARLTLAPPAYVISAEGPDHNRVFTATVSVGDATATG-VGSSKKQAEMAAALT 221
Query: 149 AWSAL 153
W L
Sbjct: 222 LWRTL 226
>gi|443705473|gb|ELU02009.1| hypothetical protein CAPTEDRAFT_221252 [Capitella teleta]
Length = 428
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 69/173 (39%), Gaps = 28/173 (16%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKAS-VNFNGEIFESPSYCTTLRQAEHAA 60
+KN+LQE Q+ +P Y I PD A K S V NGE FES +++E A
Sbjct: 50 FKNKLQEYCQQKKIAIPKYELI---PDPANNDKKSAVIVNGERFESVGAYPKKKESEMDA 106
Query: 61 AEVALNVLST----RGPSRSLTARVLDETGIYKNL----------------LQETAHRAG 100
A VAL L T + P + V T + KN L E R
Sbjct: 107 ACVALKALQTAEAQKAPKYAAEQPVAI-TAVAKNCKPEKEKESTEENMIGQLNEVCQRNS 165
Query: 101 LNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ P Y G F+C V+ + E + KK AEK A AA + L
Sbjct: 166 VPAPQYNERGDKSGE---FSCDVKFKMVVVLNENFENKKCAEKAVAKAALTKL 215
>gi|224046380|ref|XP_002199282.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Taeniopygia guttata]
gi|449494254|ref|XP_004175288.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Taeniopygia guttata]
Length = 680
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 33/185 (17%)
Query: 18 PSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR- 75
P Y + E GP HA F + + +E+ +++++A+HAAA ALN + P+
Sbjct: 96 PQYKLLNERGPAHAKMFTVQLTLGEQTWEAEG--SSIKKAQHAAASKALNETTLPKPTPR 153
Query: 76 -----------SLTARV--------LDETGIYKNLLQETA--HRAGLNLPVYTTVRSGPG 114
S+T V E IY+ L + +RA N R
Sbjct: 154 PPKNNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPIPNYRANYNFRGMYNQRY--- 210
Query: 115 HVP---IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSL-TNKETDKP 170
H P +F + + F GE KT++ A NAA+ A AL+ P + L N ET K
Sbjct: 211 HCPVPKVFYVQLTVGNSEFFGE-GKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKE 269
Query: 171 EEQDQ 175
E+D+
Sbjct: 270 SEEDK 274
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQE R + Y + + GP H IF+ V+L G+ ++KK+AE+NAA
Sbjct: 155 YKTALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNGIPIGQGRGRSKKEAEQNAA 214
Query: 147 IAAWSALK 154
AA LK
Sbjct: 215 KAAIEKLK 222
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQEL QR + Y I EGPDHA F V+ NG I + ++AE A
Sbjct: 155 YKTALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNG-IPIGQGRGRSKKEAEQNA 213
Query: 61 AEVALNVL 68
A+ A+ L
Sbjct: 214 AKAAIEKL 221
>gi|224130804|ref|XP_002328380.1| predicted protein [Populus trichocarpa]
gi|222838095|gb|EEE76460.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 380 MYTGGFNPQRIAPAVQIRSVIPVCAAPPS 408
M GG +P+ +APAV+IRSV+PVC+APP+
Sbjct: 269 MNLGGVHPRFMAPAVRIRSVVPVCSAPPA 297
>gi|53791439|dbj|BAD52491.1| putative DEAD/H box polypeptide 36 protein [Oryza sativa Japonica
Group]
Length = 1063
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
KN LQ RAG + P Y T + +F TVE GM F G+P KK AEK+AA
Sbjct: 968 KNQLQTLLTRAGHDNPSYKTKQIKN---SLFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1024
Query: 149 AWSAL 153
A + L
Sbjct: 1025 ALNWL 1029
>gi|403736854|ref|ZP_10949815.1| ribonuclease III [Austwickia chelonae NBRC 105200]
gi|403192949|dbj|GAB76585.1| ribonuclease III [Austwickia chelonae NBRC 105200]
Length = 267
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQELA + +P Y GPDH F A E+ + ++AE AA
Sbjct: 173 WKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARAVIGEEVL-GEGVGHSKKEAEQRAA 231
Query: 62 EVALNVLSTR 71
EVA L R
Sbjct: 232 EVAWTELDRR 241
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP-AKTKKQAEKNAA 146
+K LQE A +P Y +GP H +FT + G GE +KK+AE+ AA
Sbjct: 173 WKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARA-VIGEEVLGEGVGHSKKEAEQRAA 231
Query: 147 IAAWSALKR 155
AW+ L R
Sbjct: 232 EVAWTELDR 240
>gi|449130794|ref|ZP_21767013.1| ribonuclease 3 [Treponema denticola SP37]
gi|448941834|gb|EMB22734.1| ribonuclease 3 [Treponema denticola SP37]
Length = 246
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVA 64
A+VA
Sbjct: 231 AKVA 234
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYENL 238
>gi|449125768|ref|ZP_21762070.1| ribonuclease 3 [Treponema denticola OTK]
gi|448939737|gb|EMB20654.1| ribonuclease 3 [Treponema denticola OTK]
Length = 246
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVA 64
A+VA
Sbjct: 231 AKVA 234
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYENL 238
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 84 ETGI---YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKK 139
E GI YK LQE + LP Y V+ G H F C V + G+ + K+KK
Sbjct: 156 ENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEHNKTFYCDVMIKGVKYGFGIGKSKK 215
Query: 140 QAEKNAAIAAWSALKR 155
AEKNAA A L++
Sbjct: 216 DAEKNAAKEAVKKLEQ 231
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K LQE GL +P Y GP H FT + G+++ ++KK+AE+ AA
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 274
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y EGPDH F A+ G + + + + ++AE AA
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGT-GRSKKEAEQQAA 274
Query: 62 E 62
E
Sbjct: 275 E 275
>gi|417003249|ref|ZP_11942320.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 236
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 12 RSC--FNLPSYTCIREG-PDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL 68
++C F++ SY +G +H K V + FE+ L ++ E ++L
Sbjct: 94 KACEKFDMSSYLNFGKGEKEHGGHLKKHVK--ADTFEAVCAAIYLD----SSYEKLFDIL 147
Query: 69 STRGPSRSLTARVLDETGI---YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVE 124
+L ++++ I YK LQE + + Y V+ GP H FT V+
Sbjct: 148 VKNYKEEALV--IINDDSIFNDYKTKLQEYHNAKDKKILKYELVKEEGPEHAKTFTMAVK 205
Query: 125 LAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
L K KKQAE++AA AA++ +K+
Sbjct: 206 LGNRILATGVGKNKKQAEQDAAKAAYNKIKK 236
>gi|407784395|ref|ZP_11131544.1| ribonuclease III [Celeribacter baekdonensis B30]
gi|407204097|gb|EKE74078.1| ribonuclease III [Celeribacter baekdonensis B30]
Length = 227
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNF-NGEIFESPSYCTTLRQAEHAA 60
K LQE AQ P YT I R+GPDHAP F V +GE +S + T+ RQAE A
Sbjct: 159 KTALQEWAQARGQKPPKYTEISRKGPDHAPVFTIEVTLESGETAQSEA--TSKRQAEQAV 216
Query: 61 AEVALNVLSTR 71
A+ L L +
Sbjct: 217 AKALLTKLEAK 227
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A G P YT + R GP H P+FT V L A +K+QAE+ A
Sbjct: 159 KTALQEWAQARGQKPPKYTEISRKGPDHAPVFTIEVTLESGETAQSEATSKRQAEQAVAK 218
Query: 148 AAWSALK 154
A + L+
Sbjct: 219 ALLTKLE 225
>gi|407799645|ref|ZP_11146523.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
gi|407058122|gb|EKE44080.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
Length = 227
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A G P Y V R GP H P+FT V L AK+K+ AE++AA
Sbjct: 159 KTALQEWAQARGQTPPAYVEVARDGPDHAPLFTIEVRLDSGQSARAAAKSKRMAEQSAAR 218
Query: 148 AAWSALK 154
A +AL+
Sbjct: 219 ALLTALE 225
>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
gi|123074286|sp|Q1D5X9.1|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
Length = 260
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE AH P Y V SGP H +F + L F ++KK+AE++AA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAA 232
Query: 147 IAAWSALK 154
A L+
Sbjct: 233 QATLEKLR 240
>gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
gi|226735365|sp|A8I3B5.1|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
Length = 235
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL PVY V RSGP H P F V+L G+ +K+ A+K AA
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAAS 221
Query: 148 A 148
A
Sbjct: 222 A 222
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
KN LQE Q++ LP+Y DHA +F V G + S + + AE AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSL-WMDNKKDAEKHAAT 66
Query: 63 VALNVLSTRGPSRSL 77
VAL LS G R +
Sbjct: 67 VALVELSKGGHKRLM 81
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
KN LQE + L LP Y + H F C V++ G + KK AEK+AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAATV 67
Query: 149 AWSALKR 155
A L +
Sbjct: 68 ALVELSK 74
>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 31/162 (19%)
Query: 26 GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDE- 84
GP H PRF V NGE + AE+ AA++AL+ L R S + + E
Sbjct: 30 GPSHDPRFTFQVFVNGEKL-GEGQDKKKKGAEYMAAKMALSTLKERENSAATVIQTTSEQ 88
Query: 85 -----------TGI----------------YKNLLQETAHRAGLNLPVYTTVRSGPGHVP 117
TG Y +L E + L + + R G H+P
Sbjct: 89 DSSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQKHTL-IVTFLDERHGQPHIP 147
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK-RMPN 158
F C + F K KK+A++ AA A +LK + PN
Sbjct: 148 EFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLKSKYPN 189
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A +V L + + + + S++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNASVSGRHLD----WKTTLQELCAELKAPMPVYSATATGPEHDQTF 207
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
+ +AG++ KK AE+ AA A L+ P L
Sbjct: 208 SAVATVAGLSVGNGQGHNKKLAEQQAAQEACQTLRETPLL 247
>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length = 234
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + L P Y +GP H FT + G KTKK+AE+ AA
Sbjct: 164 WKTSLQELSAERSLGQPQYQISSTGPDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAE 223
Query: 148 AAWSALK 154
AW AL+
Sbjct: 224 LAWKALE 230
>gi|326509123|dbj|BAJ86954.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1247
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG + P Y T + +F TVE GM F G+P KK AEK+AA
Sbjct: 1147 KNQLQTLLTRAGHDNPSYKTKQIKN---TLFRSTVEFNGMEFVGQPCANKKLAEKDAA 1201
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K LQE GL +P Y GP H FT + G+++ ++KK+AE+ AA
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 246
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT----TLRQAE 57
+K LQEL +P Y EGPDH F A+ G SY T + ++AE
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGG-----VSYGTGTGRSKKEAE 242
Query: 58 HAAAE 62
AAE
Sbjct: 243 QQAAE 247
>gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605]
gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605]
Length = 241
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHV--PIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE + GL LP Y T H F C V + G N +++K+AE+NAA
Sbjct: 165 KTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQGRNLAEAKGRSRKEAEQNAA 224
Query: 147 IAAWSALK 154
AA AL+
Sbjct: 225 TAALQALE 232
>gi|365898360|ref|ZP_09436321.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
gi|365420885|emb|CCE08863.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
Length = 284
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLESAEGVGGSKRAAEKVAA 268
>gi|62901980|gb|AAY18941.1| DKFZp564I0123 [synthetic construct]
Length = 337
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 72 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 129
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 130 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 184
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 185 TICRLESFMETGKGA-SKKQAKRNAA 209
>gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H]
gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H]
Length = 174
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LLQE GL LP Y + S GP H P+F +V G TGE A +K+ AE AA
Sbjct: 104 KTLLQEYMLSQGLPLPHYELLSSDGPSHAPVFRVSVTTMGHTGTGE-AGSKRLAESAAAT 162
Query: 148 A 148
A
Sbjct: 163 A 163
>gi|119571203|gb|EAW50818.1| hCG201528 [Homo sapiens]
Length = 288
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L +
Sbjct: 23 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANAST 80
Query: 75 RSLTARVL--DETGIYKNL------LQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN LQE A G LP YT + GP H +T L
Sbjct: 81 CFAVPDPLMPDPSKQPKNQLNLIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 140
Query: 126 AGMNFTGEPAKTKKQAEKNAA 146
TG+ A +KKQA++NAA
Sbjct: 141 ESFMETGKGA-SKKQAKRNAA 160
>gi|351699987|gb|EHB02906.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A, partial [Heterocephalus glaber]
Length = 296
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 31 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 88
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 89 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 143
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM--PNLDSLTN 164
L TG+ A +KKQA++NAA + ++ N SLTN
Sbjct: 144 TICRLESFMETGKGA-SKKQAKRNAAEKFLAKFSKISPENHISLTN 188
>gi|357521527|ref|XP_003631052.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
gi|355525074|gb|AET05528.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
Length = 1214
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTT--VRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG LP Y T +R+ F TV G++F G+P +KK AEK+AA
Sbjct: 1117 KNQLQTFLSRAGHQLPTYKTQELRNNQ-----FRSTVIFNGLDFVGQPCNSKKLAEKSAA 1171
Query: 147 IAAWSALK 154
A LK
Sbjct: 1172 AEAILWLK 1179
>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
Length = 226
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGE 42
YK LQEL QR + Y + +GPDHA RF V+ NGE
Sbjct: 155 YKTALQELVQRESGQVLKYRLVGSQGPDHAKRFFVDVDLNGE 196
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K LQE GL +P Y GP H FT + G+++ ++KK+AE+ AA
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 235
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT----TLRQAE 57
+K LQEL +P Y EGPDH F A+ G SY T + ++AE
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGG-----VSYGTGTGRSKKEAE 231
Query: 58 HAAAE 62
AAE
Sbjct: 232 QQAAE 236
>gi|218187401|gb|EEC69828.1| hypothetical protein OsI_00149 [Oryza sativa Indica Group]
Length = 1680
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
KN LQ RAG + P Y T + +F TVE GM F G+P KK AEK+AA
Sbjct: 1585 KNQLQTLLTRAGHDNPSYKTKQIKNS---LFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1641
Query: 149 AWSAL 153
A + L
Sbjct: 1642 ALNWL 1646
>gi|392394753|ref|YP_006431355.1| ribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525831|gb|AFM01562.1| ribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
Length = 262
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G + T ++AE AA
Sbjct: 191 YKTMLQEKAQREEMEVTYRILAEEGPDHNKRFTAGVFLQGNL-RGKGIGRTKKEAEQRAA 249
Query: 62 EVALNVLS 69
+ L+ L
Sbjct: 250 QQVLDELG 257
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP-AKTKKQAEKN 144
G YK +LQE A R + + GP H FT V L G N G+ +TKK+AE+
Sbjct: 189 GDYKTMLQEKAQREEMEVTYRILAEEGPDHNKRFTAGVFLQG-NLRGKGIGRTKKEAEQR 247
Query: 145 AA 146
AA
Sbjct: 248 AA 249
>gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 242
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE Q+ LP Y ++ EGPDH F SV+ F+S R+AE A
Sbjct: 173 YKTILQEYCQKKWKKLPEYILLKEEGPDHDKDFSVSVSCEN-YFQSNGDGKNKRRAEQMA 231
Query: 61 AEVALNVL 68
A+ AL +L
Sbjct: 232 AKAALRIL 239
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 83 DETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQA 141
+ET YK +LQE + LP Y ++ GP H F+ +V + K K++A
Sbjct: 168 EETKDYKTILQEYCQKKWKKLPEYILLKEEGPDHDKDFSVSVSCENYFQSNGDGKNKRRA 227
Query: 142 EKNAAIAAWSALKRM 156
E+ AA AA LK +
Sbjct: 228 EQMAAKAALRILKLL 242
>gi|408791618|ref|ZP_11203228.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463028|gb|EKJ86753.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 242
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE Q+ LP Y+ ++ EGPDH F SV F++ R+AE A
Sbjct: 173 YKTILQEFCQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLEKN-FQATGEGKNKRRAEQMA 231
Query: 61 AEVALNVL 68
A+ AL L
Sbjct: 232 AKAALRFL 239
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 14 CFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP 73
+ P Y + G + +A+ N + FE+ L Q E L+ P
Sbjct: 105 VYRFPEYLLL--GKGERDKGEANANLQADCFEAFLGALYLDQG----LESCRKFLT---P 155
Query: 74 SRSLTARVLD---ETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMN 129
+ + +D ET YK +LQE + LP Y+ ++ GP H F +V L N
Sbjct: 156 HFQMMEKAVDDAEETKDYKTILQEFCQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLEK-N 214
Query: 130 F--TGEPAKTKKQAEKNAAIAAWSALK 154
F TGE K K++AE+ AA AA LK
Sbjct: 215 FQATGE-GKNKRRAEQMAAKAALRFLK 240
>gi|338535028|ref|YP_004668362.1| ribonuclease III [Myxococcus fulvus HW-1]
gi|337261124|gb|AEI67284.1| ribonuclease III [Myxococcus fulvus HW-1]
Length = 257
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE AH P Y V SGP H +F + L F ++KK+AE++AA
Sbjct: 170 YKTLLQELAHERLKLQPRYRVVSESGPEHSKVFEVELVLGETAFARASGRSKKEAEQSAA 229
Query: 147 IAAWSALKR 155
A L++
Sbjct: 230 QATLEKLRQ 238
>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 256
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A +V L + + + + S++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNASVSGRHLD----WKTTLQELCAELKAPMPVYSATATGPEHDQTF 207
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
+ +AG+ KK AE+ AA A L+ P L
Sbjct: 208 SAVATVAGLTVGNGQGHNKKLAEQQAAQEACQTLRETPLL 247
>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
Length = 243
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK +LQE +AG Y V GP H F +V + + K KK+AE+NAA
Sbjct: 170 YKTVLQEVVQQAGECKISYEVVAEYGPDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAA 229
Query: 147 IAAWSALKRMPNLD 160
A LK++ +LD
Sbjct: 230 KEALQKLKKLNSLD 243
>gi|432107292|gb|ELK32706.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Myotis davidii]
Length = 288
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 23 NIPVYECERSDMQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 80
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 81 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 135
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
+L TG+ A +KKQA++NAA
Sbjct: 136 TICKLESFMETGKGA-SKKQAKRNAA 160
>gi|114052769|ref|NP_001039335.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Bos taurus]
gi|426220790|ref|XP_004004595.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Ovis aries]
gi|122135712|sp|Q2HJ92.1|PRKRA_BOVIN RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=Protein
activator of the interferon-induced protein kinase;
AltName: Full=Protein kinase, interferon-inducible
double stranded RNA-dependent activator
gi|87578189|gb|AAI13247.1| Protein kinase, interferon-inducible double stranded RNA dependent
activator [Bos taurus]
gi|296490704|tpg|DAA32817.1| TPA: interferon-inducible double stranded RNA-dependent protein
kinase activator A [Bos taurus]
gi|440895619|gb|ELR47763.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Bos grunniens mutus]
Length = 313
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|222617638|gb|EEE53770.1| hypothetical protein OsJ_00159 [Oryza sativa Japonica Group]
Length = 1700
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
KN LQ RAG + P Y T + +F TVE GM F G+P KK AEK+AA
Sbjct: 1605 KNQLQTLLTRAGHDNPSYKTKQIKNS---LFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1661
Query: 149 AWSAL 153
A + L
Sbjct: 1662 ALNWL 1666
>gi|449435188|ref|XP_004135377.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1144
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P K K+ AE++AA
Sbjct: 1047 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1101
Query: 147 I--AAW 150
I AW
Sbjct: 1102 IESLAW 1107
>gi|344252498|gb|EGW08602.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Cricetulus griseus]
Length = 212
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 ----PSRSLTARVLDETGIYKNL------LQETAHRAGLNLPVYT-TVRSGPGHVPIFTC 121
P S+ D + KN LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPSMP----DPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTT 161
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 162 ICRLESFMETGKGA-SKKQAKRNAA 185
>gi|405374858|ref|ZP_11029152.1| Ribonuclease III [Chondromyces apiculatus DSM 436]
gi|397086526|gb|EJJ17629.1| Ribonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 260
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE AH P Y V SGP H +F + L F ++KK+AE++AA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGDTAFARASGRSKKEAEQSAA 232
Query: 147 IAAWSALK 154
A L+
Sbjct: 233 QATLDKLQ 240
>gi|395732538|ref|XP_002812678.2| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double
stranded RNA-dependent protein kinase activator A [Pongo
abelii]
Length = 532
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 267 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 324
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 325 CFAVPDPXMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 379
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 380 TICRLESFMETGKGA-SKKQAKRNAA 404
>gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
Length = 263
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQ+ AQ++ P Y ++E GPDH FK S GE+ + ++ ++AE A
Sbjct: 162 YKSVLQQYAQKTLGETPRYDLLKEYGPDHLKYFKVSAAL-GEVVYAAAWGINKKEAEQKA 220
Query: 61 AEVALNVLSTR 71
A AL+ L +
Sbjct: 221 AANALSELEGK 231
>gi|449506389|ref|XP_004162736.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1144
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P K K+ AE++AA
Sbjct: 1047 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAA 1101
Query: 147 I--AAW 150
I AW
Sbjct: 1102 IESLAW 1107
>gi|337287867|ref|YP_004627339.1| Ribonuclease 3 [Thermodesulfobacterium sp. OPB45]
gi|334901605|gb|AEH22411.1| Ribonuclease 3 [Thermodesulfobacterium geofontis OPF15]
Length = 237
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEI 43
YK QLQELAQ+ P Y + GP H P+F+ + NGEI
Sbjct: 161 YKTQLQELAQKFYHKTPEYEILSVSGPSHNPKFEIGIKLNGEI 203
>gi|403258654|ref|XP_003921868.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Saimiri
boliviensis boliviensis]
Length = 313
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|356523499|ref|XP_003530375.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1161
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+LLQ RAG + P Y T F VE GM F G+P + K+ AE++AAI
Sbjct: 1063 KSLLQTLLMRAGHSPPKYKTKHLKTNE---FRALVEFKGMQFVGKPKRNKQLAERDAAIE 1119
Query: 149 AWSAL 153
A + L
Sbjct: 1120 ALAWL 1124
>gi|348585626|ref|XP_003478572.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Cavia porcellus]
Length = 313
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|4505581|ref|NP_003681.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Homo sapiens]
gi|386780754|ref|NP_001247776.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Macaca mulatta]
gi|114581964|ref|XP_515940.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Pan troglodytes]
gi|332209454|ref|XP_003253827.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Nomascus
leucogenys]
gi|397489070|ref|XP_003815560.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Pan paniscus]
gi|74735517|sp|O75569.1|PRKRA_HUMAN RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=PKR-associated
protein X; AltName: Full=PKR-associating protein X;
AltName: Full=Protein activator of the
interferon-induced protein kinase; AltName: Full=Protein
kinase, interferon-inducible double stranded
RNA-dependent activator
gi|4927416|gb|AAD33099.1|AF083033_1 PKR-associating protein RAX [Homo sapiens]
gi|3290198|gb|AAC25672.1| protein activator of the interferon-induced protein kinase [Homo
sapiens]
gi|12052756|emb|CAB66550.1| hypothetical protein [Homo sapiens]
gi|14495717|gb|AAH09470.1| Protein kinase, interferon-inducible double stranded RNA dependent
activator [Homo sapiens]
gi|30583325|gb|AAP35907.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Homo sapiens]
gi|49065476|emb|CAG38556.1| PRKRA [Homo sapiens]
gi|61362125|gb|AAX42165.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|61362132|gb|AAX42166.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|62630137|gb|AAX88882.1| unknown [Homo sapiens]
gi|119631441|gb|EAX11036.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_c [Homo sapiens]
gi|158254634|dbj|BAF83290.1| unnamed protein product [Homo sapiens]
gi|190689557|gb|ACE86553.1| protein kinase, interferon-inducible double stranded RNA dependent
activator protein [synthetic construct]
gi|307685745|dbj|BAJ20803.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [synthetic construct]
gi|380817486|gb|AFE80617.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|383422389|gb|AFH34408.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|384950022|gb|AFI38616.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 1 [Macaca mulatta]
gi|410208224|gb|JAA01331.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410264034|gb|JAA19983.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410296018|gb|JAA26609.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
gi|410341901|gb|JAA39897.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
Length = 313
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|354477724|ref|XP_003501069.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Cricetulus griseus]
Length = 313
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPSMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|301766900|ref|XP_002918870.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ailuropoda melanoleuca]
Length = 313
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|426337864|ref|XP_004032914.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Gorilla gorilla
gorilla]
Length = 313
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|30584929|gb|AAP36730.1| Homo sapiens protein kinase, interferon-inducible double stranded
RNA dependent activator [synthetic construct]
gi|33303847|gb|AAQ02437.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, partial [synthetic construct]
gi|60653869|gb|AAX29627.1| protein kinase interferon-inducible double stranded RNA dependent
activator [synthetic construct]
Length = 314
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|62897775|dbj|BAD96827.1| protein kinase, interferon-inducible double stranded RNA dependent
activator variant [Homo sapiens]
Length = 313
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|149022336|gb|EDL79230.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_b [Rattus norvegicus]
Length = 313
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Rattus norvegicus]
gi|81908679|sp|Q4V8C7.1|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=Protein
activator of the interferon-induced protein kinase;
AltName: Full=Protein kinase, interferon-inducible
double stranded RNA-dependent activator
gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent
activator [Rattus norvegicus]
Length = 313
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|405980874|ref|ZP_11039203.1| ribonuclease III [Actinomyces neuii BVS029A5]
gi|404392893|gb|EJZ87950.1| ribonuclease III [Actinomyces neuii BVS029A5]
Length = 257
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 70 TRGPSRSLTARVLDET---GI---YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
TR L A +LD+ GI +K LQE A L+ PVY + +GP H +FT
Sbjct: 138 TRKVVEDLLADLLDQVVQRGIGMDWKTTLQELAAALELSSPVYESTSTGPDHARVFTAQA 197
Query: 124 ELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
+ G A +KK A+ AA AA L++ ++
Sbjct: 198 LVDGQVVASGTASSKKLAQHEAARAAVEELQKRYDI 233
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQELA + P Y GPDHA F A +G++ S + ++ + A+H AA
Sbjct: 162 WKTTLQELAAALELSSPVYESTSTGPDHARVFTAQALVDGQVVASGT-ASSKKLAQHEAA 220
Query: 62 EVALNVLSTR 71
A+ L R
Sbjct: 221 RAAVEELQKR 230
>gi|6755162|ref|NP_036001.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Mus musculus]
gi|81882073|sp|Q9WTX2.1|PRKRA_MOUSE RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=PKR-associated
protein X; AltName: Full=PKR-associating protein X;
Short=RAX; AltName: Full=Protein activator of the
interferon-induced protein kinase; AltName: Full=Protein
kinase, interferon-inducible double stranded
RNA-dependent activator
gi|4927414|gb|AAD33098.1|AF083032_1 PKR-associating protein RAX [Mus musculus]
gi|15030117|gb|AAH11311.1| Protein kinase, interferon inducible double stranded RNA dependent
activator [Mus musculus]
gi|74196321|dbj|BAE33056.1| unnamed protein product [Mus musculus]
gi|148695265|gb|EDL27212.1| protein kinase, interferon inducible double stranded RNA dependent
activator, isoform CRA_a [Mus musculus]
Length = 313
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 222
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE G+ P+Y + RSGP H+PIF + + G K+KK E+NAA
Sbjct: 153 KSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRRA-TGKSKKLGEENAAR 211
Query: 148 AAWSALK 154
LK
Sbjct: 212 MMLEELK 218
>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
Length = 240
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAG-MNFTGE-PAKTKKQAEKNA 145
+K LQE + GL P Y GP H FT + + G + TG PA KK AE+ A
Sbjct: 159 WKTSLQELSASLGLGAPYYEVTGEGPDHARTFTASAVVGGEVRGTGTGPA--KKIAEQEA 216
Query: 146 AIAAWSAL 153
A AAW+AL
Sbjct: 217 ASAAWTAL 224
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K LQE GL +P Y GP H FT + G+++ ++KK+AE+ AA
Sbjct: 200 WKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 258
>gi|444909584|ref|ZP_21229775.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
gi|444720533|gb|ELW61317.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
Length = 255
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE AQ P Y CI E GPDH F+ V+ +++ + + + ++AE A
Sbjct: 166 YKTKLQETAQEQLKVTPRYQCISEAGPDHEKVFEVQVSLGPDVY-ARATGRSKKEAEQNA 224
Query: 61 AEVALNVLS 69
A AL L+
Sbjct: 225 AHAALKWLA 233
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQETA P Y + +GP H +F V L + ++KK+AE+NAA
Sbjct: 166 YKTKLQETAQEQLKVTPRYQCISEAGPDHEKVFEVQVSLGPDVYARATGRSKKEAEQNAA 225
Query: 147 IAAWSALKR 155
AA L R
Sbjct: 226 HAALKWLAR 234
>gi|357131922|ref|XP_003567582.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like
[Brachypodium distachyon]
Length = 1247
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG P Y T + +F TVE GM F G+P KK AEK+AA
Sbjct: 1151 KNQLQTLLTRAGHGNPSYKTKQIKNS---LFRSTVEFNGMQFVGQPCANKKLAEKDAA 1205
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+QLQ+ AQ++ P+Y + E GPDH FK F P++ T + AE A
Sbjct: 162 YKSQLQQYAQKNHGTTPTYHLLEEKGPDHRKCFKILARIGSHQF-PPAWGQTKKDAEQRA 220
Query: 61 AEVALNVL 68
A+ AL+VL
Sbjct: 221 AQNALSVL 228
>gi|443673520|ref|ZP_21138582.1| Ribonuclease III [Rhodococcus sp. AW25M09]
gi|443413903|emb|CCQ16920.1| Ribonuclease III [Rhodococcus sp. AW25M09]
Length = 260
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 88 YKNLLQE-TAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K LQE TA RA L +P Y +GP H FT TV + ++KK+AE+ AA
Sbjct: 179 WKTSLQELTAERA-LGVPAYAIESTGPDHDKEFTATVLVGESPLGVGVGRSKKEAEQKAA 237
Query: 147 IAAWSAL 153
AW+AL
Sbjct: 238 SLAWNAL 244
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLR---QAEH 58
+K LQEL +P+Y GPDH F A+V + ESP R +AE
Sbjct: 179 WKTSLQELTAERALGVPAYAIESTGPDHDKEFTATVL----VGESPLGVGVGRSKKEAEQ 234
Query: 59 AAAEVALNVLS 69
AA +A N LS
Sbjct: 235 KAASLAWNALS 245
>gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1]
gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1]
Length = 226
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A G +P YT V RSGP H P FT V +K+QAE+ AA
Sbjct: 154 KTALQEWAQARGQGVPTYTLVGRSGPDHAPEFTVEVSAGKAKPLRAQGNSKRQAEQTAAR 213
Query: 148 AAWSALKRMPNLD 160
A AL P D
Sbjct: 214 ALLEALGVWPAKD 226
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ +P+YT + R GPDHAP F V+ G+ + + RQAE AA
Sbjct: 154 KTALQEWAQARGQGVPTYTLVGRSGPDHAPEFTVEVS-AGKAKPLRAQGNSKRQAEQTAA 212
Query: 62 EVALNVLST 70
L L
Sbjct: 213 RALLEALGV 221
>gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
Length = 238
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 81 VLDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKK 139
++D+ K LQE A GL P Y + R GP H PIFT V + G+ K+
Sbjct: 158 LIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAVVVQGLESAEARGPNKR 217
Query: 140 QAEKNAA 146
A+ AA
Sbjct: 218 SAQMQAA 224
>gi|74004908|ref|XP_545545.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Canis lupus familiaris]
gi|194043952|ref|XP_001927740.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Sus scrofa]
Length = 313
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|213417919|ref|NP_001132990.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 3 [Homo sapiens]
gi|332209456|ref|XP_003253828.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Nomascus
leucogenys]
gi|402888757|ref|XP_003907715.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Papio anubis]
gi|410035931|ref|XP_003949974.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Pan troglodytes]
gi|37955186|gb|AAP20061.1| HSD14 [Homo sapiens]
gi|119631439|gb|EAX11034.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_a [Homo sapiens]
Length = 288
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 23 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 80
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 81 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 135
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 136 TICRLESFMETGKGA-SKKQAKRNAA 160
>gi|357115628|ref|XP_003559590.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like
[Brachypodium distachyon]
Length = 1121
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG P Y T H+ F VE GM F G+P + K+ AE++AA
Sbjct: 1020 KSLLQTLLMRAGHTPPKYKT-----KHLKTNEFRAIVEFKGMQFVGKPKRNKQIAERDAA 1074
Query: 147 IAAWSAL 153
I A L
Sbjct: 1075 IEALGWL 1081
>gi|343959708|dbj|BAK63711.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Pan troglodytes]
Length = 288
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 23 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 80
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 81 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 135
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 136 TICRLESFMETGKGA-SKKQAKRNAA 160
>gi|395837197|ref|XP_003791527.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 1 [Otolemur
garnettii]
Length = 313
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|344268337|ref|XP_003406017.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Loxodonta africana]
Length = 517
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
N+P Y C R H P F V G+I + T+ + A+H AAE A+N+L
Sbjct: 209 NIPVYECERSDVQIHVPTFTFRVTV-GDITCT-GEGTSKKLAKHRAAEAAINILKANASI 266
Query: 75 RSLTARVL--DETGIYKNL------LQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL 125
L D + KN LQE A G LP YT + GP H +T L
Sbjct: 267 CFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRL 326
Query: 126 AGMNFTGEPAKTKKQAEKNAA 146
TG+ A +KKQA++NAA
Sbjct: 327 ESFMETGKGA-SKKQAKRNAA 346
>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 234
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 28 DHAPRFKASVNFNGE--------IFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTA 79
DH K +N +GE FES L Q + +L +R P LTA
Sbjct: 103 DHLLLGKGEINLDGEENPSILADAFESVLGAYYLDQGFARVTGLLNRLLISRIPE--LTA 160
Query: 80 RVLDETGIYKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTK 138
+D YK LQE + G +Y V + GP H F V + G +TK
Sbjct: 161 DGIDRD--YKTRLQEVVQKDGPAEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTK 218
Query: 139 KQAEKNAAIAAWSALK 154
K+AE+ AA A AL+
Sbjct: 219 KEAEQRAAREALKALR 234
>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 75 RSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP 134
+S++ D Y +L+ E + G + R GP H P F + + G +
Sbjct: 215 KSVSVTTADRERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGE 274
Query: 135 AKTKKQAEKNAAIAAWSALK 154
KT K+A +NAA AW L+
Sbjct: 275 GKTAKEARQNAAQLAWPVLQ 294
>gi|355713679|gb|AES04751.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Mustela putorius furo]
Length = 304
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 40 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 97
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 98 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 152
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 153 TICRLESFMETGKGA-SKKQAKRNAA 177
>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|81388984|sp|Q67PF5.1|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 YKNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE QR P Y + EGP H RF+ V F G + + ++AE A
Sbjct: 165 YKTQLQEQLQRQGAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLL-GTGWGRNKKEAEQEA 223
Query: 61 AEVAL 65
A AL
Sbjct: 224 ARQAL 228
>gi|389877454|ref|YP_006371019.1| RNAse III [Tistrella mobilis KA081020-065]
gi|388528238|gb|AFK53435.1| RNAse III [Tistrella mobilis KA081020-065]
Length = 242
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ P YT I REGPDHAP F+ + + + R AE AAA
Sbjct: 169 KTALQEWAQARGLEAPVYTVIGREGPDHAPSFRVRAQV-ARLGAEEATGASKRIAEQAAA 227
Query: 62 EVALNVLSTRG 72
+ L+ RG
Sbjct: 228 QSLLSRAEGRG 238
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A GL PVYT + R GP H P F ++A + +K+ AE+ AA
Sbjct: 169 KTALQEWAQARGLEAPVYTVIGREGPDHAPSFRVRAQVARLGAEEATGASKRIAEQAAA 227
>gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
Length = 228
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+ LQE A + G +PVY TV R GP H P+F V L G+ +K+ A++ AA
Sbjct: 159 KSQLQEWAAQKGYGVPVYETVARKGPDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAA 217
>gi|414341280|ref|YP_006982801.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|411026615|gb|AFV99869.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|453330555|dbj|GAC87301.1| ribonuclease III [Gluconobacter thailandicus NBRC 3255]
Length = 244
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LLQE GL LP Y + + GP H P+F V+ G+ GE A +K+ AE AAI
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAVQARGLTGRGE-AGSKRVAESAAAI 232
>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
Length = 248
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE Q+ PSY+ +R GPDH F SV G++ P+ + AE AA
Sbjct: 179 YKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIFYVSVKL-GDVVYGPASGKNKKSAEQAA 237
Query: 61 AEVALNVLS 69
A VA L
Sbjct: 238 AGVACKALG 246
>gi|426337866|ref|XP_004032915.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Gorilla gorilla
gorilla]
Length = 288
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 23 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 80
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 81 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 135
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 136 TICRLESFMETGKGA-SKKQAKRNAA 160
>gi|338715834|ref|XP_001497407.3| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Equus caballus]
gi|390464340|ref|XP_002749315.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Callithrix jacchus]
gi|403258656|ref|XP_003921869.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Saimiri
boliviensis boliviensis]
gi|410968934|ref|XP_003990954.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Felis catus]
gi|431894951|gb|ELK04744.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Pteropus alecto]
Length = 288
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 23 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 80
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 81 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 135
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 136 TICRLESFMETGKGA-SKKQAKRNAA 160
>gi|417398798|gb|JAA46432.1| Putative interferon-inducible double stranded rna-dependent protein
kinase activator a [Desmodus rotundus]
Length = 313
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NVPVYECERSDMQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|410943088|ref|ZP_11374829.1| ribonuclease III [Gluconobacter frateurii NBRC 101659]
Length = 244
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LLQE GL LP Y + + GP H P+F V+ G+ GE A +K+ AE AAI
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAVQARGLTGRGE-AGSKRVAESAAAI 232
>gi|398831537|ref|ZP_10589715.1| ribonuclease III [Phyllobacterium sp. YR531]
gi|398212244|gb|EJM98853.1| ribonuclease III [Phyllobacterium sp. YR531]
Length = 238
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ P+Y+ V R+GP H P FT V + G ++K+ AE+ AAI
Sbjct: 160 KTELQEWAHQQDGAQPLYSVVERTGPDHDPQFTIRVNVKGFEPATGKGRSKRLAEQEAAI 219
Query: 148 A 148
A
Sbjct: 220 A 220
>gi|222625798|gb|EEE59930.1| hypothetical protein OsJ_12573 [Oryza sativa Japonica Group]
Length = 966
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG P Y T H+ F VE GM F G+P + K+ AE++AA
Sbjct: 865 KSLLQTLLMRAGHTPPKYKT-----KHLKTNEFRAIVEFKGMQFAGKPKRNKQLAERDAA 919
Query: 147 IAAWSAL 153
I A L
Sbjct: 920 IEALGWL 926
>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 234
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G P Y V RSGP H P F V +AG++ + +K+ AE++AA
Sbjct: 162 KTALQEWAHQRGPEPPKYEVVDRSGPDHNPKFRIKVSIAGVDPSEGEGSSKRLAEQSAAT 221
Query: 148 A 148
A
Sbjct: 222 A 222
>gi|374815505|ref|ZP_09719242.1| ribonuclease III [Treponema primitia ZAS-1]
Length = 232
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+LLQE + P Y + RSGP H F V + F K KK AE+ AA
Sbjct: 156 YKSLLQELSQHLYRKYPAYRLLKRSGPEHDRFFWIEVTVDDKTFGPGMGKNKKTAEQEAA 215
Query: 147 IAAWSALKRMP 157
A+ AL ++P
Sbjct: 216 RIAYDALSQLP 226
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+QLQE+ QR+ Y I+E GP H F + V NGEI + ++AE A
Sbjct: 176 YKSQLQEIVQRNGQGSLEYLIIQEKGPAHNREFVSRVALNGEIL-GTGVGKSKKEAEQKA 234
Query: 61 AEVALNVL 68
A+ AL+ L
Sbjct: 235 AKEALDEL 242
>gi|383785612|ref|YP_005470182.1| ribonuclease III [Leptospirillum ferrooxidans C2-3]
gi|383084525|dbj|BAM08052.1| ribonuclease III [Leptospirillum ferrooxidans C2-3]
Length = 373
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +Q+ QRS P Y I E GP H RF+ E+ S TT R A A
Sbjct: 202 YKMLVQKWCQRSHGVQPEYRVIEEFGPPHQRRFRVGAFVKEELLAS-GETTTKRGASILA 260
Query: 61 AEVALNVLSTR-GPSRSLTARVLDETGIYK-NLLQETAHRAG 100
A+ A V+S R G ++ + +E GI+K ++ +E H G
Sbjct: 261 AKNAWEVVSGRDGETKKTDEPLQEEPGIHKSHMAEEVIHEPG 302
>gi|392426870|ref|YP_006467864.1| ribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391356833|gb|AFM42532.1| ribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 262
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP-AKTKKQAEKN 144
G YK +LQE A R + + V GP H FT V L G N G+ +TKK+AE++
Sbjct: 188 GDYKTMLQEKAQRQEIEVGYQILVEEGPDHNKSFTAGVFLQG-NLMGKGIGRTKKEAEQH 246
Query: 145 AA 146
AA
Sbjct: 247 AA 248
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK LQE AQR + + EGPDH F A V G + T +HAA
Sbjct: 190 YKTMLQEKAQRQEIEVGYQILVEEGPDHNKSFTAGVFLQGNLMGKGIGRTKKEAEQHAAQ 249
Query: 62 EVALN 66
+V N
Sbjct: 250 QVLEN 254
>gi|297806475|ref|XP_002871121.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316958|gb|EFH47380.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1160
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P + K AEK+AA
Sbjct: 1064 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAA 1118
Query: 147 IAAWSAL 153
+ A + L
Sbjct: 1119 VEALAWL 1125
>gi|395837199|ref|XP_003791528.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A isoform 2 [Otolemur
garnettii]
Length = 288
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 23 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 80
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 81 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 135
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 136 TICRLESFMETGKGA-SKKQAKRNAA 160
>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 75 RSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP 134
+S++ D Y +L+ E + G + R GP H P F + + G +
Sbjct: 215 KSVSVTTADRERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGE 274
Query: 135 AKTKKQAEKNAAIAAWSALK 154
KT K+A +NAA AW L+
Sbjct: 275 GKTAKEARQNAAQLAWPVLQ 294
>gi|56698030|ref|YP_168401.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
gi|81349082|sp|Q5LNK5.1|RNC_SILPO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56679767|gb|AAV96433.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
Length = 225
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G P Y V RSGP H P+FT ELA A K+QAE+ AA
Sbjct: 159 KTALQEWAQARGQTPPRYELVKRSGPDHAPVFTILAELADGRRAEATAGAKRQAEQAAA 217
>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
Length = 233
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K LQELA + +P Y GPDH+ RF AS+ + ++ + + ++ +QAE AAA
Sbjct: 164 KTSLQELAAQLGRGVPDYRIEDSGPDHSKRFHASLVLSNDVIATGT-GSSKKQAEMAAAL 222
Query: 63 VALNVL 68
A +L
Sbjct: 223 EAWTIL 228
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE A + G +P Y SGP H F ++ L+ +KKQAE AA+
Sbjct: 164 KTSLQELAAQLGRGVPDYRIEDSGPDHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALE 223
Query: 149 AWSALK 154
AW+ L+
Sbjct: 224 AWTILQ 229
>gi|367475465|ref|ZP_09474924.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
gi|365272181|emb|CCD87392.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
Length = 367
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 293 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 351
>gi|145361138|ref|NP_680142.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|10178028|dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana]
gi|332003418|gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1161
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG + P Y T H+ F VE GM F G+P + K AEK+AA
Sbjct: 1061 KSLLQTLLMRAGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAA 1115
Query: 147 IAAWSAL 153
+ A + L
Sbjct: 1116 VEALAWL 1122
>gi|281352310|gb|EFB27894.1| hypothetical protein PANDA_007403 [Ailuropoda melanoleuca]
Length = 296
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 31 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 88
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 89 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 143
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 144 TICRLESFMETGKGA-SKKQAKRNAA 168
>gi|213417911|ref|NP_001132989.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A isoform 2 [Homo sapiens]
gi|21739361|emb|CAD38725.1| hypothetical protein [Homo sapiens]
gi|119631440|gb|EAX11035.1| protein kinase, interferon-inducible double stranded RNA dependent
activator, isoform CRA_b [Homo sapiens]
gi|410296016|gb|JAA26608.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Pan troglodytes]
Length = 302
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 37 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 94
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 95 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 149
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 150 TICRLESFMETGKGA-SKKQAKRNAA 174
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+LLQE AG + P+Y T+ SG H F V + G K K++AE+ AA
Sbjct: 162 KSLLQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQLASGTGKNKQEAEQKAAQ 221
Query: 148 AAWSAL 153
A AL
Sbjct: 222 KALDAL 227
>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
Length = 259
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K+ LQE A +P+Y + R GPDHAPRF+ +V G + T+ R AE AAA
Sbjct: 180 KSALQEWAMGRSLPIPTYAVVERTGPDHAPRFRIAVQVEG-LEPGLGDGTSKRIAEQAAA 238
Query: 62 EVALN 66
+
Sbjct: 239 RALME 243
>gi|146341377|ref|YP_001206425.1| ribonuclease III [Bradyrhizobium sp. ORS 278]
gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 278]
Length = 357
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 283 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 341
>gi|365889050|ref|ZP_09427771.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3809]
gi|365335227|emb|CCE00302.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3809]
Length = 373
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 299 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 357
>gi|456875951|gb|EMF91131.1| ribonuclease III [Leptospira santarosai str. ST188]
Length = 248
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ +LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEASGYGASKKTAEQNA 235
Query: 61 AEVALN 66
A+ N
Sbjct: 236 AKELFN 241
>gi|410449758|ref|ZP_11303811.1| ribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|422005221|ref|ZP_16352416.1| ribonuclease III [Leptospira santarosai serovar Shermani str. LT
821]
gi|410016515|gb|EKO78594.1| ribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|417256076|gb|EKT85516.1| ribonuclease III [Leptospira santarosai serovar Shermani str. LT
821]
Length = 248
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ +LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEASGYGASKKTAEQNA 235
Query: 61 AEVALN 66
A+ N
Sbjct: 236 AKELFN 241
>gi|456354830|dbj|BAM89275.1| ribonuclease III [Agromonas oligotrophica S58]
Length = 358
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 284 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 342
>gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 240
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQE+A + P Y GPDH RF A +G F+ P +QAE AA
Sbjct: 164 WKTSLQEIAAAMESDPPEYRISETGPDHDKRFTAVALVDGRTFD-PGMGHNKKQAEQHAA 222
Query: 62 EVALNVL 68
E A VL
Sbjct: 223 ENAFRVL 229
>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
29799]
gi|150269990|gb|EDM97509.1| ribonuclease III [Pseudoflavonifractor capillosus ATCC 29799]
Length = 223
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG 41
YK LQEL QR + +Y + GPDHA RF+ V NG
Sbjct: 155 YKTALQELVQRESGQVLAYRLVGSTGPDHAKRFQVEVELNG 195
>gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
Length = 220
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 92 LQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
LQE A + LP+Y + +GP H P+F V+L + K+KK AE+NAAI
Sbjct: 157 LQELALKNFKKLPIYKLISNTGPRHKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECL 216
Query: 151 SALK 154
+K
Sbjct: 217 KNVK 220
>gi|359685221|ref|ZP_09255222.1| ribonuclease III [Leptospira santarosai str. 2000030832]
Length = 238
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ +LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 167 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEASGYGASKKTAEQNA 225
Query: 61 AEVALN 66
A+ N
Sbjct: 226 AKELFN 231
>gi|18087663|gb|AAL58955.1|AC091811_4 putative helicase [Oryza sativa Japonica Group]
Length = 1121
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG P Y T H+ F VE GM F G+P + K+ AE++AA
Sbjct: 1020 KSLLQTLLMRAGHTPPKYKT-----KHLKTNEFRAIVEFKGMQFAGKPKRNKQLAERDAA 1074
Query: 147 IAAWSAL 153
I A L
Sbjct: 1075 IEALGWL 1081
>gi|348541265|ref|XP_003458107.1| PREDICTED: double-stranded RNA-specific editase B2-like
[Oreochromis niloticus]
Length = 1080
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 98 RAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157
R GL + T ++GP H P+F+ VE+ G +F G TKKQA+ AA A + + P
Sbjct: 455 RPGLQYDI--TSKTGPLHAPVFSVAVEVNGFHFEGR-GPTKKQAKMRAAEQALQSFIQFP 511
Query: 158 N 158
N
Sbjct: 512 N 512
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G LP Y V R+GP H P F V +AG G A TK++AE+NAA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRTAEG-LAGTKREAEQNAA 213
>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
Length = 258
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
Y+ LQE R L Y +++GPG+ P++ V + G+ F A+TK+ A A I
Sbjct: 190 YRGRLQEYVARENLGELEYAFLQTGPGNCPVWAARVTVGGIPFGEGEARTKQGA---AMI 246
Query: 148 AAWSALKRM 156
AA AL R+
Sbjct: 247 AAKEALARL 255
>gi|442321139|ref|YP_007361160.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
gi|441488781|gb|AGC45476.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
Length = 257
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE AH P Y V +GP H +F + L ++KK+AE++AA
Sbjct: 162 YKTLLQEMAHEKLKLSPRYRVVSEAGPEHSKVFEVELTLGDAPLARASGRSKKEAEQSAA 221
Query: 147 IAAWSALKR 155
A LKR
Sbjct: 222 QATLERLKR 230
>gi|410658788|ref|YP_006911159.1| Ribonuclease III [Dehalobacter sp. DCA]
gi|410661777|ref|YP_006914148.1| Ribonuclease III [Dehalobacter sp. CF]
gi|409021143|gb|AFV03174.1| Ribonuclease III [Dehalobacter sp. DCA]
gi|409024133|gb|AFV06163.1| Ribonuclease III [Dehalobacter sp. CF]
Length = 248
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K LQE AQ+ + + Y I E GPDH RF A V +GE+ + T ++AE A
Sbjct: 181 FKTMLQEKAQKKEYEV-CYRIIEETGPDHDKRFTAGVYLHGEL-QGKGIGKTKKEAEQQA 238
Query: 61 AEVAL 65
A AL
Sbjct: 239 AHFAL 243
>gi|365883075|ref|ZP_09422255.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 375]
gi|365288507|emb|CCD94786.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 375]
Length = 358
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 284 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 342
>gi|218193752|gb|EEC76179.1| hypothetical protein OsI_13511 [Oryza sativa Indica Group]
Length = 1150
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG P Y T H+ F VE GM F G+P + K+ AE++AA
Sbjct: 1049 KSLLQTLLMRAGHTPPKYKT-----KHLKTNEFRAIVEFKGMQFAGKPKRNKQLAERDAA 1103
Query: 147 IAAWSAL 153
I A L
Sbjct: 1104 IEALGWL 1110
>gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53]
gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53]
Length = 268
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL P Y V R+GP H P F VEL G+ +K+ AEK AA
Sbjct: 198 KTVLQEWAQGKGLPTPAYREVERTGPDHDPKFRVRVELPGLEPAEGIGGSKRAAEKEAAS 257
Query: 148 A 148
A
Sbjct: 258 A 258
>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
Length = 233
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K LQE Q P+Y I ++GP H P F + V+ +GE + ++++Q+E AA
Sbjct: 152 WKTLLQETLQAEGLR-PTYRVISKQGPPHRPVFISGVSVDGEEV-ATGRGSSIKQSEQAA 209
Query: 61 AEVALNVLSTR 71
A AL +L R
Sbjct: 210 ARAALEILGVR 220
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQA 141
DE +K LLQET GL P Y + + GP H P+F V + G + KQ+
Sbjct: 147 DELRDWKTLLQETLQAEGLR-PTYRVISKQGPPHRPVFISGVSVDGEEVATGRGSSIKQS 205
Query: 142 EKNAAIAAWSALKRMP 157
E+ AA AA L P
Sbjct: 206 EQAAARAALEILGVRP 221
>gi|410584608|ref|ZP_11321710.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
gi|410504194|gb|EKP93706.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
Length = 284
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE + R GL P Y V + GP H P +T V + G ++KK AE+ AA
Sbjct: 202 KTALQELSRRLGLGEPTYRVVGAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAAR 261
Query: 148 AAWSALK 154
A + L+
Sbjct: 262 MALAGLE 268
>gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis]
gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis]
Length = 699
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 83 LMQLNEIKPGLQYKLIS--QTGPVHAPVFIMTVEVNGQGFEGS-GPTKKKAKLNAAEKAL 139
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 140 RSFVQFPN 147
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K QLQE+ QR L Y + E GP H+ F+A V NG++ T +QAE A
Sbjct: 160 HKTQLQEIVQRDRDVLIQYDILEESGPAHSKAFEAQVVVNGQML-GRGEGRTKKQAEQNA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L R
Sbjct: 219 AKEAINKLLHR 229
>gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
kowalevskii]
Length = 618
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLD 83
R GP HAP F V +G+ FE C +++QA+H A+ AL + + + V
Sbjct: 90 RSGPPHAPVFVMGVKVDGQYFEGKG-C-SIKQAKHIVAKQALKFVQS---DVEIGGTVDA 144
Query: 84 ETGIYKNL----LQETAHRAG--LNLPVY--------TTVRSGPGHVPIFTCTVELAGMN 129
E+G L ET ++ L L Y T SG GH ++T V++
Sbjct: 145 ESGNGDQLSTTSESETLSQSDPTLLLAAYNPGPIIYDTLSESGNGHEKMYTMAVKVGDAV 204
Query: 130 FTGEPAKTKKQAEKNAAIAAWSAL 153
F G A K Q + AA AA S L
Sbjct: 205 FQGTGA-NKHQGKMAAARAALSQL 227
>gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2]
gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2]
Length = 271
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Query: 26 GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLS--TRGPSRSLTARVLD 83
G R + SV G+I E+ L AAAE + R P+RSL
Sbjct: 142 GAGAGARLRKSVL--GDICEAVIGAVFLDGGYPAAAEFVQRNWTERMRKPTRSLRD---- 195
Query: 84 ETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAE 142
K +LQE A GL PVY V R+GP H P F V L G++ +K+ AE
Sbjct: 196 ----PKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVSLPGLDPAEGVGGSKRAAE 251
Query: 143 KNAA 146
K AA
Sbjct: 252 KVAA 255
>gi|71896437|ref|NP_001026112.1| double-stranded RNA-binding protein Staufen homolog 2 [Gallus
gallus]
gi|53130432|emb|CAG31545.1| hypothetical protein RCJMB04_7n10 [Gallus gallus]
Length = 472
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 33/185 (17%)
Query: 18 PSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR- 75
P Y + E GP HA F + + +E+ +++++A+HAAA ALN + P+
Sbjct: 96 PQYKLLNERGPAHAKMFTVQLTLGEQTWEAEG--SSIKKAQHAAASKALNETTLPKPTPR 153
Query: 76 -----------SLTARV--------LDETGIYKNLLQETA--HRAGLNLPVYTTVRSGPG 114
S+T V E IY+ L + +RA N R
Sbjct: 154 PPKNNINNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPIPNYRANYNFRGMYNQRY--- 210
Query: 115 HVP---IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSL-TNKETDKP 170
H P IF + + F GE KT++ A NAA+ A AL+ P + L N E K
Sbjct: 211 HCPVPKIFYVQLTVGNSEFFGE-GKTRQAARHNAAMKALQALQNEPIPEKLPQNGEAGKE 269
Query: 171 EEQDQ 175
E+D+
Sbjct: 270 TEEDK 274
>gi|344249398|gb|EGW05502.1| Double-stranded RNA-binding protein Staufen-like 1 [Cricetulus
griseus]
Length = 489
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQ-AEHAAAEVALNVLSTRGPSRSL--TARVLDETGIYK 89
++ ++ G+ F +RQ +H A AL L P L R L+E + K
Sbjct: 39 YQVELSVGGQQFNGKG---KMRQTVKHDATARALRTLQNEPPPERLEMNGRELEEENLNK 95
Query: 90 NLLQETAHRA-GLNLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNA 145
+ + + A NLPV V SGP H+ F V + F GE K+KK ++KNA
Sbjct: 96 SEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVG--EFVGEGEGKSKKISKKNA 153
Query: 146 AIAAWSALKRMPNLDSL 162
A A L+R+P L ++
Sbjct: 154 ARAVLEQLRRLPPLPAV 170
>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 229
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K++LQE +QR +P Y E GP H P F +V NGE+ S T+ ++++ AA
Sbjct: 162 KSELQEFSQRIYHEMPVYELEEESGPAHLPHFTTAVYVNGELVGRGS-GTSKKESQTQAA 220
Query: 62 EVALNVL 68
+ AL+ L
Sbjct: 221 QAALDKL 227
>gi|429769972|ref|ZP_19302056.1| ribonuclease III [Brevundimonas diminuta 470-4]
gi|429185885|gb|EKY26855.1| ribonuclease III [Brevundimonas diminuta 470-4]
Length = 238
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A G LP Y V R+G H P FT +AG +++++AEK AAI
Sbjct: 170 KSALQEWAQGQGRPLPTYAVVERTGSDHAPTFTVETTVAGYEPARAQGRSRQEAEKAAAI 229
Query: 148 A 148
A
Sbjct: 230 A 230
>gi|108711083|gb|ABF98878.1| Helicase associated domain family protein, expressed [Oryza sativa
Japonica Group]
Length = 1138
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ RAG P Y T H+ F VE GM F G+P + K+ AE++AA
Sbjct: 1037 KSLLQTLLMRAGHTPPKYKT-----KHLKTNEFRAIVEFKGMQFAGKPKRNKQLAERDAA 1091
Query: 147 IAAWSAL 153
I A L
Sbjct: 1092 IEALGWL 1098
>gi|374997118|ref|YP_004972617.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357215484|gb|AET70102.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 261
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAE-HAA 60
YK LQE AQR + + EGPDH F A V GE+ T ++AE HAA
Sbjct: 188 YKTVLQEKAQREEKEVSYQILLEEGPDHNKSFTAGVFIEGELM-GKGIGRTKKEAEQHAA 246
Query: 61 AEV 63
EV
Sbjct: 247 KEV 249
>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
Length = 256
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A +V L + + + + +++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNATVSGRHLD----WKTTLQELCAELKAPMPVYSATSTGPEHDQTF 207
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
+AG+ KK AE+ AA A L+ P L
Sbjct: 208 NAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRETPLL 247
>gi|449497595|ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1231
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
KN LQ RAG P Y T + F TV G+NF G+P +KK AEK+AA
Sbjct: 1118 KNQLQTLLLRAGHETPTYNTKQLRNNQ---FRSTVIFNGLNFVGQPCGSKKLAEKDAAAE 1174
Query: 149 AWSALK 154
A L+
Sbjct: 1175 ALLWLQ 1180
>gi|428312114|ref|YP_007123091.1| ribonuclease III [Microcoleus sp. PCC 7113]
gi|428253726|gb|AFZ19685.1| ribonuclease III [Microcoleus sp. PCC 7113]
Length = 227
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 KNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K Q Q+ A + P Y I E GPDHA F A V NG+++ + AE AA
Sbjct: 159 KGQFQQWALANFVQNPEYLIIDESGPDHAKEFTAEVRVNGKVY-GVGIGRRKQDAEKRAA 217
Query: 62 EVAL 65
EVAL
Sbjct: 218 EVAL 221
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +QEL Q + P Y ++E GPDH F A V N E+ S + ++AE A
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGS-GKSKKEAEQNA 220
Query: 61 AEVALNVLS 69
A A LS
Sbjct: 221 AHFAFQKLS 229
>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 256
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A +V L + + + + +++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNATVSGRHLD----WKTTLQELCAELKAPMPVYSATSTGPEHDQTF 207
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
+AG+ KK AE+ AA A L+ P L
Sbjct: 208 NAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRETPLL 247
>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
Length = 252
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H+ FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAWVVVAGQRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
AAW L
Sbjct: 228 AAWRTL 233
>gi|449439551|ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1168
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 89 KNLLQETAHRAGLNLPVYTT--VRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG P Y T +R+ F TV G+NF G+P +KK AEK+AA
Sbjct: 1071 KNQLQTLLLRAGHETPTYNTKQLRNNQ-----FRSTVIFNGLNFVGQPCGSKKLAEKDAA 1125
Query: 147 IAA 149
A
Sbjct: 1126 AEA 1128
>gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062]
gi|374331952|ref|YP_005082136.1| ribonuclease 3 [Pseudovibrio sp. FO-BEG1]
gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062]
gi|359344740|gb|AEV38114.1| Ribonuclease 3 [Pseudovibrio sp. FO-BEG1]
Length = 235
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ P Y I R GPDHAP FK VN G + + ++ R AE +AA
Sbjct: 165 KTTLQEWAQSKGRPTPQYETISRSGPDHAPIFKIRVNVEG-VDPGEAVGSSKRIAEQSAA 223
Query: 62 EVALNVLSTRG 72
E N+L G
Sbjct: 224 E---NILRREG 231
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G P Y T+ RSGP H PIF V + G++ +K+ AE++AA
Sbjct: 165 KTTLQEWAQSKGRPTPQYETISRSGPDHAPIFKIRVNVEGVDPGEAVGSSKRIAEQSAA 223
>gi|443289363|ref|ZP_21028457.1| Ribonuclease III [Micromonospora lupini str. Lupac 08]
gi|385887516|emb|CCH16531.1| Ribonuclease III [Micromonospora lupini str. Lupac 08]
Length = 328
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H+ FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
AAW L
Sbjct: 228 AAWRML 233
>gi|359767990|ref|ZP_09271770.1| ribonuclease III [Gordonia polyisoprenivorans NBRC 16320]
gi|378717492|ref|YP_005282381.1| ribonuclease 3 [Gordonia polyisoprenivorans VH2]
gi|359314567|dbj|GAB24603.1| ribonuclease III [Gordonia polyisoprenivorans NBRC 16320]
gi|375752195|gb|AFA73015.1| ribonuclease 3 [Gordonia polyisoprenivorans VH2]
Length = 243
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G P Y +GP H FT +AG + +TKK+AE+ AA
Sbjct: 171 WKTSLQELTAEHGFGPPQYQVSSTGPDHNKEFTAVAVVAGESVGEGVGRTKKEAEQKAAA 230
Query: 148 AAWSAL 153
AW L
Sbjct: 231 LAWQTL 236
>gi|333979683|ref|YP_004517628.1| ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823164|gb|AEG15827.1| Ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
Length = 243
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 44 FESPSYCTTLRQAEHAAAEVALNVLSTRGP--SRSLTARVLDETGIYKNLLQETAHRAGL 101
FE+ L Q A +VAL L P L RV + YK LQE G
Sbjct: 125 FEALLGAVYLDQGLEMARKVALQYLK---PVIDDVLEGRVERD---YKTELQEILQEEGQ 178
Query: 102 NLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
Y +R GP H IFT V G +TKK+AE+ AA A + L +P
Sbjct: 179 VDISYAILREEGPDHHKIFTAAVYFGGKEMGRGQGRTKKEAEQQAACRALARLGYLPG 236
>gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
Length = 183
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIF 44
+K LQELA +P Y EGPDH F A V +++
Sbjct: 110 WKTSLQELAAERALGVPEYVITDEGPDHMKTFTAKVRVGDQLY 152
>gi|41058336|gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
Length = 318
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR---MPNLDSLT 163
FTCTV++ GM + G A+TKK+AE AA A A++ PN S T
Sbjct: 18 FTCTVDVGGMKYIGAAARTKKEAEIKAARTALLAVQSSGFAPNYSSYT 65
>gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018 = JCM 11026]
Length = 309
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 74 SRSLTARVLDETGI----------YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+R++ R++D+T +K L AH GL+ P Y SGP + P+F
Sbjct: 204 ARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARA 263
Query: 124 ELA---GMNFTGEP-AKTKKQAEKNAAIAAWSALKR 155
LA G GE +K++A+ AA AW L R
Sbjct: 264 VLAHESGDELLGEADGSSKRKAQLAAADKAWHVLDR 299
>gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217]
gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217]
Length = 238
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 41 GEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAG 100
G+ E+ L AA V L + R V D+ K LQE A G
Sbjct: 128 GDAMEAVIAAIYLDAGFDAARAVVLRLWGAR------IGEVKDDARDAKTALQEWAQARG 181
Query: 101 LNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
L P Y +R GP H P+FT + +L A +K+QAE+ AA A + L+
Sbjct: 182 LPPPDYIELRRKGPDHAPVFTISAQLKSGESAEATAGSKRQAEQTAAKALLARLQ 236
>gi|418743679|ref|ZP_13300038.1| ribonuclease III [Leptospira santarosai str. CBC379]
gi|418751592|ref|ZP_13307876.1| ribonuclease III [Leptospira santarosai str. MOR084]
gi|421111669|ref|ZP_15572142.1| ribonuclease III [Leptospira santarosai str. JET]
gi|409968065|gb|EKO35878.1| ribonuclease III [Leptospira santarosai str. MOR084]
gi|410795074|gb|EKR92971.1| ribonuclease III [Leptospira santarosai str. CBC379]
gi|410802865|gb|EKS09010.1| ribonuclease III [Leptospira santarosai str. JET]
Length = 248
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ +LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEANGYGASKKTAEQNA 235
Query: 61 AEVALN 66
A+ N
Sbjct: 236 AKELFN 241
>gi|356574252|ref|XP_003555264.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1209
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P+Y T + F TVE GM G+P KK AEK+AA
Sbjct: 1122 KSQLQTLLTRAGYAAPIYMTKQLKNNQ---FQATVEFNGMQIMGQPCNNKKSAEKDAAAE 1178
Query: 149 AWSAL 153
A L
Sbjct: 1179 ALQWL 1183
>gi|415703380|ref|ZP_11459258.1| ribonuclease III [Gardnerella vaginalis 284V]
gi|415704969|ref|ZP_11460240.1| ribonuclease III [Gardnerella vaginalis 75712]
gi|388051691|gb|EIK74715.1| ribonuclease III [Gardnerella vaginalis 75712]
gi|388052840|gb|EIK75855.1| ribonuclease III [Gardnerella vaginalis 284V]
Length = 298
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 74 SRSLTARVLDETGI----------YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+R++ R++D+T +K L AH GL+ P Y SGP + P+F
Sbjct: 193 ARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARA 252
Query: 124 ELA---GMNFTGEP-AKTKKQAEKNAAIAAWSALKR 155
LA G GE +K++A+ AA AW L R
Sbjct: 253 VLAHESGDELLGEADGSSKRKAQLAAADKAWHVLDR 288
>gi|417556075|ref|ZP_12207135.1| ribonuclease III [Gardnerella vaginalis 315-A]
gi|333603099|gb|EGL14521.1| ribonuclease III [Gardnerella vaginalis 315-A]
Length = 301
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 74 SRSLTARVLDETGI----------YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+R++ R++D+T +K L AH GL+ P Y SGP + P+F
Sbjct: 196 ARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARA 255
Query: 124 ELA---GMNFTGEP-AKTKKQAEKNAAIAAWSALKR 155
LA G GE +K++A+ AA AW L R
Sbjct: 256 VLAHENGDELLGEADGSSKRKAQLAAADKAWHVLDR 291
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G LP Y V R+GP H P F V +AG G A TK++AE+NAA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRAAEG-LAGTKREAEQNAA 213
>gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
gi|385801363|ref|YP_005837766.1| ribonuclease III [Gardnerella vaginalis HMP9231]
gi|415706928|ref|ZP_11461775.1| ribonuclease III [Gardnerella vaginalis 0288E]
gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
gi|333393441|gb|AEF31359.1| ribonuclease III [Gardnerella vaginalis HMP9231]
gi|388053928|gb|EIK76873.1| ribonuclease III [Gardnerella vaginalis 0288E]
Length = 298
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 74 SRSLTARVLDETGI----------YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+R++ R++D+T +K L AH GL+ P Y SGP + P+F
Sbjct: 193 ARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARA 252
Query: 124 ELA---GMNFTGEP-AKTKKQAEKNAAIAAWSALKR 155
LA G GE +K++A+ AA AW L R
Sbjct: 253 VLAHESGDELLGEADGSSKRKAQLAAADKAWHVLDR 288
>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
Length = 252
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H+ FT V +AG + G ++KK+AE+ AA
Sbjct: 168 WKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAWVVVAGRRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
AAW L
Sbjct: 228 AAWRTL 233
>gi|126307762|ref|XP_001373191.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Monodelphis domestica]
Length = 1131
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 23/152 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL--------------S 69
+EGP H P+FK V + F + + + A+ AAEVA+ L +
Sbjct: 570 QEGPAHDPKFKYCVKMGSQTFPT-MMANSKKAAKQMAAEVAVKALCGDSSLTPWTKQVYT 628
Query: 70 TRGPSRSLT---ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
++ S S T A+ + + Y N L E A G +SGP H P F
Sbjct: 629 SKLVSPSATPGKAKKIGDLIKYLNANPISGLFEYARSNGFAAEFKLVDQSGPPHEPKFIY 688
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ ++ AA AA L
Sbjct: 689 QAKVGGRWFPAVSAHSKKQGKQEAADAALRVL 720
>gi|354480663|ref|XP_003502524.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Cricetulus griseus]
Length = 550
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 33 FKASVNFNGEIFESPSYCTTLRQ-AEHAAAEVALNVLSTRGPSRSL--TARVLDETGIYK 89
++ ++ G+ F +RQ +H A AL L P L R L+E + K
Sbjct: 100 YQVELSVGGQQFNGKG---KMRQTVKHDATARALRTLQNEPPPERLEMNGRELEEENLNK 156
Query: 90 NLLQETAHRA-GLNLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNA 145
+ + + A NLPV V SGP H+ F V + F GE K+KK ++KNA
Sbjct: 157 SEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVG--EFVGEGEGKSKKISKKNA 214
Query: 146 AIAAWSALKRMPNLDSL 162
A A L+R+P L ++
Sbjct: 215 ARAVLEQLRRLPPLPAV 231
>gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029]
gi|221641174|ref|YP_002527436.1| ribonuclease 3 [Rhodobacter sphaeroides KD131]
gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
gi|429205942|ref|ZP_19197211.1| Ribonuclease III [Rhodobacter sp. AKP1]
gi|90101641|sp|Q3J5W1.1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043337|sp|A3PGF8.1|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807895|sp|B9KSA7.1|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029]
gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
gi|428191078|gb|EKX59621.1| Ribonuclease III [Rhodobacter sp. AKP1]
Length = 229
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 41 GEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAG 100
G+ E+ L AA ++ L + R A+V + K LQE A G
Sbjct: 117 GDALEAVIAAVYLDAGFEAARQLVLRLWGAR------IAQVERDARDAKTALQEWAQARG 170
Query: 101 LNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
L P Y V RSGP H PIFT V L A TK+ AE+
Sbjct: 171 LPPPTYEAVDRSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214
>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
Length = 243
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL+Q+ LP YT ++ +GPDH F V + + + P+ + ++A A
Sbjct: 172 YKSALQELSQKKFQILPLYTVVKAQGPDHDRTFWVEVQIHTKKY-GPATGKSKKEAAQAV 230
Query: 61 AEVALNVL 68
AE+A N L
Sbjct: 231 AELAWNDL 238
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+ LQE + + LP+YT V++ GP H F V++ + K+KK+A + A
Sbjct: 172 YKSALQELSQKKFQILPLYTVVKAQGPDHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVA 231
Query: 147 IAAWSALKR 155
AW+ L +
Sbjct: 232 ELAWNDLHK 240
>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Callithrix jacchus]
Length = 1200
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT----- 78
+EGP H P+F+ V + F S S + + A+ AAE A+ L + L+
Sbjct: 637 KEGPAHEPKFEYCVQVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMLSDDQPE 695
Query: 79 -----------------ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
R + E Y N L E A G +SGP H
Sbjct: 696 GTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 236
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQEL Q++ SY+ + GPDH F V NG + + + ++AE A
Sbjct: 167 YKTQLQELVQQNGEQQISYSVTDQFGPDHNKTFVTEVKING-VTQGQGKGHSKKEAEQNA 225
Query: 61 AEVALNVLSTR 71
A+ ALN L T+
Sbjct: 226 AKDALNNLKTK 236
>gi|440684120|ref|YP_007158915.1| RNAse III [Anabaena cylindrica PCC 7122]
gi|428681239|gb|AFZ60005.1| RNAse III [Anabaena cylindrica PCC 7122]
Length = 228
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 89 KNLLQETAHRA-GLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN QE R G N P Y T + GP H P F V + G + + KK+AEK+AA
Sbjct: 155 KNRFQEWVQREIGANPPKYMTEQIGGPSHAPEFVAKVLVDGKEYGIGKGRNKKEAEKDAA 214
Query: 147 IAAWSALKR 155
A + LK+
Sbjct: 215 EDALAKLKK 223
>gi|398350685|ref|YP_006396149.1| ribonuclease 3 [Sinorhizobium fredii USDA 257]
gi|390126011|gb|AFL49392.1| ribonuclease 3 [Sinorhizobium fredii USDA 257]
Length = 239
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 62/150 (41%), Gaps = 14/150 (9%)
Query: 4 NQLQELAQRSCFN----LPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEH 58
NQL ++ SC N L + IR G D K +N ++ ES L
Sbjct: 82 NQL--VSAESCANVADELSLHEFIRTGSDVKKITGKHMMNVRADVVESLIAAIYLDGGLE 139
Query: 59 AAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVY-TTVRSGPGHVP 117
AA L + R S R K LQE AH P Y T RSGP H P
Sbjct: 140 AARRFVLRHWTDRAASADGARR------DAKTELQEWAHAKFGVAPRYRTDDRSGPDHDP 193
Query: 118 IFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
FT TVE+ G+ ++K+ AE+ AA+
Sbjct: 194 RFTVTVEVDGITSESGTDRSKRGAEQIAAM 223
>gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
Length = 244
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 79 ARVLDETGIYKNL---LQETAH-RAGLNLPVY-TTVRSGPGHVPIFTCTVELAG 127
AR L E G ++ LQE AH R G+ PVY T R+GP H P+FT TVE+ G
Sbjct: 151 ARALAEDGARRDAKTELQEWAHARFGVT-PVYRVTDRAGPDHEPVFTVTVEING 203
>gi|431794580|ref|YP_007221485.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784806|gb|AGA70089.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 262
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G + S T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVSYRILAEEGPDHNKRFTAGVYLQGSLRGKGS-GRTKKEAEQRAA 249
Query: 62 EVALNVLS 69
+ L+ +
Sbjct: 250 QQVLDEMG 257
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 81 VLDETGIYKNLLQETAHRAGLN-LPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKK 139
+LD+ YK +LQE + GL L T GP H F V + G + ++KK
Sbjct: 156 ILDD---YKTMLQEHVQKVGLGPLTYRITDERGPAHHREFVAQVWIGGQAYGEGSGRSKK 212
Query: 140 QAEKNAAIAAWSALKRMPN 158
+AE++AA A L +P+
Sbjct: 213 EAEQHAAREALMKLTALPS 231
>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
laevis]
gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 26 GPDHAPRFKASVNFNGEIF-------ESPSYC-------TTLRQAEHAAAEV-------- 63
GP H PRF V NGE + + C +TL++ E++AA V
Sbjct: 30 GPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMAAKMALSTLKERENSAATVIQTTSEQD 89
Query: 64 --ALNVLSTRGPSRSLTARVLDETGI---YKNLLQETAHRAGLNLPVYTTVRSGPGHVPI 118
++ L++ S S E G Y +L E + L + + R G H+P
Sbjct: 90 SSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQKHTL-IVTFLDERHGQPHIPE 148
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK-RMPN 158
F C + F K KK+A++ AA A +LK + PN
Sbjct: 149 FFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLKSKYPN 189
>gi|348545937|ref|XP_003460435.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like, partial [Oreochromis niloticus]
Length = 420
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDS 161
R GP H P+F +++ + K+ K+A++NAA AWSAL+ + DS
Sbjct: 47 RDGPSHKPLFFYKLKIDNKEYPVGEGKSIKEAKQNAAELAWSALQEQSDWDS 98
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQEL QR Y ++E GP H F ++V+ NG + + + ++AE A
Sbjct: 175 FKSQLQELVQRDGAGTIEYKILQEKGPAHNREFVSTVSLNGRELGTGT-GRSKKEAEQHA 233
Query: 61 AEVALNVL 68
A++AL VL
Sbjct: 234 AQMALEVL 241
>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
Length = 256
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
A +V L + + + ++ R +D +K LQE +PVYT +GP H F
Sbjct: 152 ARDVILRLFQKKIDNAVVSGRHMD----WKTNLQELCAELKAPMPVYTATSTGPEHDQTF 207
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
T +AG+ KK AE+ AA A L+ P L
Sbjct: 208 TAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRETPLL 247
>gi|390449879|ref|ZP_10235479.1| ribonuclease III [Nitratireductor aquibiodomus RA22]
gi|389663452|gb|EIM74981.1| ribonuclease III [Nitratireductor aquibiodomus RA22]
Length = 239
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE AH+ P YT R GP H P+F+ TV + G ++K++AE+ AA
Sbjct: 164 KTALQEWAHQVAGVTPSYTVEDRQGPDHDPVFSVTVRITGYEPAHGRGRSKREAEQAAA 222
>gi|389866045|ref|YP_006368286.1| ribonuclease 3 [Modestobacter marinus]
gi|388488249|emb|CCH89822.1| Ribonuclease 3 [Modestobacter marinus]
Length = 242
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL PVY +GP H FT V LAG +TKK AE+ AA
Sbjct: 166 WKTSLQELGAGQGLGAPVYDVEDTGPDHAKTFTAVVSLAGQIRGKGTGRTKKAAEQEAAE 225
Query: 148 AAWSAL 153
AW +L
Sbjct: 226 VAWRSL 231
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEI 43
+K LQEL P Y GPDHA F A V+ G+I
Sbjct: 166 WKTSLQELGAGQGLGAPVYDVEDTGPDHAKTFTAVVSLAGQI 207
>gi|415721972|ref|ZP_11468860.1| ribonuclease III [Gardnerella vaginalis 00703Bmash]
gi|415723281|ref|ZP_11469455.1| ribonuclease III [Gardnerella vaginalis 00703C2mash]
gi|388060136|gb|EIK82835.1| ribonuclease III [Gardnerella vaginalis 00703Bmash]
gi|388063731|gb|EIK86300.1| ribonuclease III [Gardnerella vaginalis 00703C2mash]
Length = 298
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 74 SRSLTARVLDETGI----------YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+R++ R++D+T +K L AH GL+ P Y SGP + P+F
Sbjct: 193 ARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARA 252
Query: 124 ELA---GMNFTGEP-AKTKKQAEKNAAIAAWSALKR 155
LA G GE +K++A+ AA AW L R
Sbjct: 253 VLAHESGDELLGEADGSSKRKAQLAAADKAWHVLDR 288
>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Callithrix jacchus]
Length = 1226
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT----- 78
+EGP H P+F+ V + F S S + + A+ AAE A+ L + L+
Sbjct: 637 KEGPAHEPKFEYCVQVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMLSDDQPE 695
Query: 79 -----------------ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
R + E Y N L E A G +SGP H
Sbjct: 696 GTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|403293613|ref|XP_003937807.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Saimiri boliviensis boliviensis]
Length = 1182
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT----- 78
+EGP H P+F+ V + F S S + + A+ AAE A+ L + L+
Sbjct: 593 KEGPAHEPKFEYCVQVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMLSDDQPE 651
Query: 79 -----------------ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
R + E Y N L E A G +SGP H
Sbjct: 652 GTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 711
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 712 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 748
>gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19]
gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19]
Length = 236
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A P Y + R GP H P+FT V + G+ K++++AEK AA+
Sbjct: 168 KSFLQEWAVANAKRPPAYNLIERRGPDHAPVFTMEVVIDGLQPQSATGKSRQEAEKTAAL 227
Query: 148 A 148
A
Sbjct: 228 A 228
>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
Length = 329
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE + R GL P Y + SGP H P +T V + G ++KK AE+ AA
Sbjct: 233 KTALQELSRRLGLGEPSYRVIDASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAAR 292
Query: 148 AAWSALK 154
A + L+
Sbjct: 293 IALADLE 299
>gi|325530262|sp|D2GVP7.1|STAU1_AILME RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
gi|281351107|gb|EFB26691.1| hypothetical protein PANDA_000813 [Ailuropoda melanoleuca]
Length = 580
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 71 RGPSRSLTARVLDETGIYKNLLQETAHRA-GLNLPVYTTV--RSGPGHVPIFTCTVELAG 127
R P + R +E + K+ + + A NLPV V SGP H+ F V +
Sbjct: 172 RRPGEQVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVG- 230
Query: 128 MNFTGE-PAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
F GE K+KK ++KNAAIA LK++P L +
Sbjct: 231 -EFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTF 265
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y SGP H F TV + G + ++KK+AE+ AA
Sbjct: 169 WKTSLQELTAAESLGVPEYHVDESGPDHAKSFVATVRVGGKEYGKGTGRSKKEAEQQAAE 228
Query: 148 AAWSALKRMPNLDSLTNKETD 168
AAW+A++ M + K D
Sbjct: 229 AAWTAIRAMRDAKEKAGKAED 249
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIF 44
+K LQEL +P Y GPDHA F A+V G+ +
Sbjct: 169 WKTSLQELTAAESLGVPEYHVDESGPDHAKSFVATVRVGGKEY 211
>gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A]
gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A]
Length = 247
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHV--PIFTCTVELAGMNFTGEPAKTKKQAEKNA 145
YK+ LQE GL++P+Y T+ H F C V + + K+ KQAEKNA
Sbjct: 173 YKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFCNVYVKNRSIAEGSGKSIKQAEKNA 232
Query: 146 AIAAWSALKRMPN 158
A ALK N
Sbjct: 233 AS---KALKYFEN 242
>gi|381183950|ref|ZP_09892635.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380316161|gb|EIA19595.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 230
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K QLQE+ QR L Y + E GP H F+A V NG++ + T +QAE A
Sbjct: 160 FKTQLQEIVQRDRDVLIQYDILGETGPAHNKAFEAQVVVNGQVLGKGT-GRTKKQAEQNA 218
Query: 61 AEVAL 65
AE A+
Sbjct: 219 AEYAI 223
>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
F0254]
gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
Length = 243
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 41 GEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAG 100
G IF+ Y T A VAL +L G L ++ TG YK +LQE
Sbjct: 131 GAIFKDSDYYT--------AKNVALKLL--LGKINKLEE--IEGTGDYKTVLQEFVQGKY 178
Query: 101 LNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
+P Y + + GP H +F +V + K+KK+AEK+AA A LK
Sbjct: 179 RKMPEYKLLNTKGPDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEALVKLK 233
>gi|63101747|gb|AAH95026.1| Adarb1 protein, partial [Danio rerio]
Length = 233
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 99 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEGS-GPTKKKAKLNAAEKAL 155
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 156 RSFVQFPN 163
>gi|398821092|ref|ZP_10579580.1| ribonuclease III [Bradyrhizobium sp. YR681]
gi|398228233|gb|EJN14367.1| ribonuclease III [Bradyrhizobium sp. YR681]
Length = 271
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 256
>gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188]
gi|404320756|ref|ZP_10968689.1| ribonuclease III [Ochrobactrum anthropi CTS-325]
gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188]
Length = 234
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G P Y + R+GP H P+F V + G ++K+ AE+NAA
Sbjct: 160 KTELQEWAHQQGNVHPSYAIISRTGPDHDPLFAVEVTVKGFATETGEGRSKRIAEQNAAE 219
Query: 148 A 148
A
Sbjct: 220 A 220
>gi|415715935|ref|ZP_11466241.1| ribonuclease III [Gardnerella vaginalis 1400E]
gi|388057752|gb|EIK80566.1| ribonuclease III [Gardnerella vaginalis 1400E]
Length = 306
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 74 SRSLTARVLDETGI----------YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+R++ R++D+T +K L AH GL+ P Y SGP + P+F
Sbjct: 201 ARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARA 260
Query: 124 ELA---GMNFTGEP-AKTKKQAEKNAAIAAWSALKR 155
LA G GE +K++A+ AA AW L R
Sbjct: 261 VLAHENGDELLGEADGSSKRKAQLAAADKAWHMLDR 296
>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
Length = 252
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 67 VLSTRGPSRSLTARV---LDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTV 123
+L GPS ++ A + LD +K LQE + GL P+Y GP H FT V
Sbjct: 151 LLRLLGPSLAVAAELGAGLD----WKTSLQELSAELGLGAPLYDVDGVGPDHDRRFTAHV 206
Query: 124 ELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
+A + KK AE+ AA A++AL+
Sbjct: 207 VIAERVWGSGTGSAKKHAEQEAARTAYAALR 237
>gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio]
Length = 233
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 99 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEGS-GPTKKKAKLNAAEKAL 155
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 156 RSFVQFPN 163
>gi|356569842|ref|XP_003553104.1| PREDICTED: probable calcium-binding protein CML20-like [Glycine
max]
Length = 239
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASV 37
MYK +LQEL + + LP + +++GPDH P FK +
Sbjct: 1 MYKAKLQELCHQRKWGLPRHFAMKDGPDHIPSFKLLI 37
>gi|400755830|ref|YP_006564198.1| ribonuclease 3 [Phaeobacter gallaeciensis 2.10]
gi|398654983|gb|AFO88953.1| ribonuclease 3 [Phaeobacter gallaeciensis 2.10]
Length = 228
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ P+Y + R+GPDH P F SV + E + + RQAE AAA
Sbjct: 159 KTTLQEFAQARGEQPPAYVLVERKGPDHQPEFTISVQLQ-DGTEGRATAGSKRQAEQAAA 217
Query: 62 EVALNVL 68
+ L L
Sbjct: 218 KFLLARL 224
>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
Length = 228
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 3 KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNF-NGEIFESPSYCTTLRQAEHAA 60
K LQE AQ P Y T REGPDHAP+F+ +V +GE E+ + + R AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGREGPDHAPQFRIAVVLASGETEEAQA--GSKRNAEQAA 216
Query: 61 AEVALNVL 68
A+ L L
Sbjct: 217 AKALLERL 224
>gi|452750894|ref|ZP_21950641.1| Ribonuclease III [alpha proteobacterium JLT2015]
gi|451962088|gb|EMD84497.1| Ribonuclease III [alpha proteobacterium JLT2015]
Length = 230
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQE A + L +P Y V R GP H P FT V L G +K++AEK AA
Sbjct: 162 KNALQEWAQQRQLPIPQYQIVGRDGPPHAPRFTVEVHLPGRTPCAGEGSSKQEAEKAAA 220
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNG 41
KN LQE AQ+ +P Y + R+GP HAPRF V+ G
Sbjct: 162 KNALQEWAQQRQLPIPQYQIVGRDGPPHAPRFTVEVHLPG 201
>gi|441206731|ref|ZP_20973264.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440628429|gb|ELQ90228.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 230
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K+ LQE GL P Y +GP H F+ TV + + +TKK+AE AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
Query: 148 AAWSAL 153
+A+ L
Sbjct: 222 SAYKTL 227
>gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222]
gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222]
Length = 241
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ + P Y I R GPDHAP F+ +V + S S T R E AAA
Sbjct: 171 KTALQEWAQAQGMSPPRYVQIARTGPDHAPEFQITVRLDDGREASASGKGTKRSIEQAAA 230
Query: 62 EVALN 66
L
Sbjct: 231 TAMLE 235
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVEL-AGMNFTGEPAKTKKQAEKNAA 146
K LQE A G++ P Y + R+GP H P F TV L G + TK+ E+ AA
Sbjct: 171 KTALQEWAQAQGMSPPRYVQIARTGPDHAPEFQITVRLDDGREASASGKGTKRSIEQAAA 230
Query: 147 IAAWSALKRMP 157
A ++R P
Sbjct: 231 TAMLEQIERTP 241
>gi|383771402|ref|YP_005450467.1| RNase III [Bradyrhizobium sp. S23321]
gi|381359525|dbj|BAL76355.1| RNase III [Bradyrhizobium sp. S23321]
Length = 273
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 200 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 258
>gi|354594333|ref|ZP_09012372.1| ribonuclease 3 [Commensalibacter intestini A911]
gi|353672009|gb|EHD13709.1| ribonuclease 3 [Commensalibacter intestini A911]
Length = 245
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE GL LPVY V + GP H PIF V N+ G K+A ++AA
Sbjct: 174 KTALQEWVLARGLPLPVYELVSQEGPSHTPIFVIKV--VAKNYEGRGEGRNKRAAESAA- 230
Query: 148 AAWSALKRMPNLDSLTNKE 166
A + LDS+ NK+
Sbjct: 231 ----AKDLLIKLDSIKNKK 245
>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
Length = 222
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE G+ PVY + RSGP H+PIF + + G ++KK E+NAA
Sbjct: 153 KSALQELLQAKGMKPPVYNVIDRSGPAHLPIFEVEICVDGKKRRA-TGRSKKLGEENAAR 211
Query: 148 AAWSALK 154
LK
Sbjct: 212 MMLEELK 218
>gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1]
gi|238690159|sp|B4RCU4.1|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1]
Length = 238
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE GL LP Y V + GP H P FT V++AG ++++ AEK AA
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAA 221
>gi|355572774|ref|ZP_09043840.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
gi|354824318|gb|EHF08571.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
Length = 240
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQE + +PVY + + GP H P+FT V ++G+ TK QA + AA
Sbjct: 170 YKKRLQEHIQKTSRQIPVYERIAKEGPDHAPVFTYRVSVSGVILGTGRGITKTQATQEAA 229
Query: 147 IAAWSAL 153
A +L
Sbjct: 230 RNALCSL 236
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE Q++ +P Y I +EGPDHAP F V+ +G I + T + + AA
Sbjct: 170 YKKRLQEHIQKTSRQIPVYERIAKEGPDHAPVFTYRVSVSGVILGTGRGITKTQATQEAA 229
>gi|114770106|ref|ZP_01447644.1| Ribonuclease III [Rhodobacterales bacterium HTCC2255]
gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255]
Length = 226
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A L P Y V RSGP H PIFT V + TG+ AK + Q+++ A+
Sbjct: 159 KTILQEWAQAKKLPTPKYIEVDRSGPDHAPIFTIEVSIE----TGQSAKAQAQSKRAAS 213
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399986771|ref|YP_006567120.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399231332|gb|AFP38825.1| Ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 230
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K+ LQE GL P Y +GP H F+ TV + + +TKK+AE AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
Query: 148 AAWSAL 153
+A+ L
Sbjct: 222 SAYKTL 227
>gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48]
gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48]
Length = 242
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A + L P Y V RSGP H PIF + L G + K++++AEK AA+
Sbjct: 174 KSHLQEWAAQKKLPSPKYEIVERSGPDHAPIFKVALTLEGYDPVVASGKSRQEAEKAAAL 233
Query: 148 A 148
+
Sbjct: 234 S 234
>gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4]
gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4]
Length = 235
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 75 RSLTARVLDETG---IYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNF 130
R R+L TG K LQE A L P Y + R GP H PIF V + G+
Sbjct: 148 RFWKKRMLSWTGPLRDAKTTLQEWAQSKSLPTPFYEVISRDGPDHAPIFVVAVAVKGLEN 207
Query: 131 TGEPAKTKKQAEKNAAIA 148
+K+ AE+NAA A
Sbjct: 208 GEGKGGSKRLAEQNAAEA 225
>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
Length = 236
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+LLQE +A LP Y T GP H +F + + G+ K+KK+AE++AA
Sbjct: 167 YKSLLQEFTQQAFKCLPQYRLTEEKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAA 226
Query: 147 IAAWSAL 153
A+ L
Sbjct: 227 KEAFLRL 233
>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
gi|189043307|sp|A4J683.1|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
Length = 246
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q+S + +YT + E GPDH F A V + G++ S + ++AE A
Sbjct: 165 YKTELQEILQQSSPDPLTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSK-KEAEQQA 223
Query: 61 AEVALNVLSTRGPS 74
A+ A L G S
Sbjct: 224 AKDAFQHLEGMGKS 237
>gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025]
gi|189043338|sp|A4WVP5.1|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025]
Length = 229
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
K LQE A GL P Y V RSGP H PIFT V L A TK+ AE+
Sbjct: 159 KTALQEWAQARGLPPPCYEAVDRSGPDHAPIFTVEVRLGNGETERSAAGTKRVAEQ 214
>gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18]
gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18]
Length = 272
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 198 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 256
>gi|440902185|gb|ELR53005.1| Double-stranded RNA-binding protein Staufen-like protein 1, partial
[Bos grunniens mutus]
Length = 587
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 65 LNVLSTRGPSRSL--TARVLDETGIYKNLLQETAHRA-GLNLPVYTTV--RSGPGHVPIF 119
L +L + PS L R +E + K+ + + A NLPV V SGP H+ F
Sbjct: 171 LRILQSEPPSERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKSF 230
Query: 120 TCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
V + F GE K+KK ++KNAAIA LK++P L ++
Sbjct: 231 VTRVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTV 272
>gi|384218340|ref|YP_005609506.1| RNase III [Bradyrhizobium japonicum USDA 6]
gi|354957239|dbj|BAL09918.1| RNase III [Bradyrhizobium japonicum USDA 6]
Length = 295
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 222 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 280
>gi|190690921|gb|ACE87235.1| protein kinase, interferon-inducible double stranded RNA dependent
activator protein [synthetic construct]
Length = 313
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYA 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
>gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana)
tropicalis]
gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis]
Length = 719
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 103 LMQLNEIKPGLQYKLIS--QTGPVHAPVFIMTVEVNGQVFEGS-GPTKKKAKLNAAEKAL 159
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 160 RSFVQFPN 167
>gi|430742662|ref|YP_007201791.1| ribonuclease III [Singulisphaera acidiphila DSM 18658]
gi|430014382|gb|AGA26096.1| ribonuclease III [Singulisphaera acidiphila DSM 18658]
Length = 241
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQ++AQR P+Y + E GPDH+ FK S + + +P++ + AE A
Sbjct: 165 YKSNLQQVAQRQFGETPTYLLLDEKGPDHSKCFKISAQIGRQRY-APAWGRNKKDAEQRA 223
Query: 61 AEVALNVLS 69
A AL+ LS
Sbjct: 224 AMNALSQLS 232
>gi|358415217|ref|XP_591710.5| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Bos taurus]
gi|359071548|ref|XP_002692543.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Bos taurus]
Length = 577
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 65 LNVLSTRGPSRSL--TARVLDETGIYKNLLQETAHRA-GLNLPVYTTV--RSGPGHVPIF 119
L +L + PS L R +E + K+ + + A NLPV V SGP H+ F
Sbjct: 157 LRILQSEPPSERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKSF 216
Query: 120 TCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
V + F GE K+KK ++KNAAIA LK++P L ++
Sbjct: 217 VTRVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTV 258
>gi|374575961|ref|ZP_09649057.1| ribonuclease III [Bradyrhizobium sp. WSM471]
gi|374424282|gb|EHR03815.1| ribonuclease III [Bradyrhizobium sp. WSM471]
Length = 283
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 268
>gi|354478898|ref|XP_003501651.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Cricetulus griseus]
Length = 1148
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F + S + + A+ AAE A+ L S S +
Sbjct: 586 KEGPAHDPKFQYCVAVGAQTFPTVS-APSKKVAKQMAAEEAMKALQEEAANSADDQSGGV 644
Query: 78 TARVLDETGI------------YKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
LDE+ Y N L E A G +SGP H P F
Sbjct: 645 NTESLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 704
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 705 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 737
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 6 LQELAQ---RSC-FNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
L E AQ ++C FNL + GP H PRFK V NG F P+ + + A+ AA
Sbjct: 458 LLEYAQFTSQTCDFNLIE----QSGPSHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAA 512
Query: 62 EVALNVL------STRGPSRSLTARVLDETG--------------IYKN-----LLQETA 96
A+ +L G L+ +DE ++ L E
Sbjct: 513 MKAMAILLREAKAKDSGNPEELSNCPMDEDSEKPAESQTSSSSATLFSGKSPVTTLLECM 572
Query: 97 HRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
H+ G + + GP H P F V + F A +KK A++ AA A AL+
Sbjct: 573 HKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAMKALQ 630
>gi|348511509|ref|XP_003443286.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oreochromis
niloticus]
Length = 747
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 129 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQMFEGM-GPTKKKAKLNAAEKAL 185
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 186 RSFVQFPN 193
>gi|432912051|ref|XP_004078843.1| PREDICTED: double-stranded RNA-specific editase B2-like [Oryzias
latipes]
Length = 776
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN-------LDSL 162
+SGP H P+F+ VE+ G +F G TKKQA+ AA A + + PN + +
Sbjct: 175 KSGPLHAPVFSVGVEVNGFHFEG-FGSTKKQAKMRAAELALQSFIQFPNASQAHAVMGNF 233
Query: 163 TNKETD 168
TN D
Sbjct: 234 TNANVD 239
>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
Length = 256
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 63 VALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCT 122
V L + + + + ++ R +D +K LQE +PVY+ +GP H F
Sbjct: 155 VVLKLFAAKIDNAVVSGRHMD----WKTTLQELCAELKAAMPVYSATSTGPEHDQTFNAV 210
Query: 123 VELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
+AG+ KK AE+ AA A AL+ P L
Sbjct: 211 ATVAGLTVGRGTGHNKKLAEQQAAEEACQALRETPLL 247
>gi|354478896|ref|XP_003501650.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Cricetulus griseus]
gi|344242007|gb|EGV98110.1| Double-stranded RNA-specific adenosine deaminase [Cricetulus
griseus]
Length = 1174
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F + S + + A+ AAE A+ L S S +
Sbjct: 586 KEGPAHDPKFQYCVAVGAQTFPTVS-APSKKVAKQMAAEEAMKALQEEAANSADDQSGGV 644
Query: 78 TARVLDETGI------------YKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
LDE+ Y N L E A G +SGP H P F
Sbjct: 645 NTESLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 704
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 705 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 737
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 6 LQELAQ---RSC-FNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
L E AQ ++C FNL + GP H PRFK V NG F P+ + + A+ AA
Sbjct: 458 LLEYAQFTSQTCDFNLIE----QSGPSHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAA 512
Query: 62 EVALNVL------STRGPSRSLTARVLDETG--------------IYKN-----LLQETA 96
A+ +L G L+ +DE ++ L E
Sbjct: 513 MKAMAILLREAKAKDSGNPEELSNCPMDEDSEKPAESQTSSSSATLFSGKSPVTTLLECM 572
Query: 97 HRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
H+ G + + GP H P F V + F A +KK A++ AA A AL+
Sbjct: 573 HKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAMKALQ 630
>gi|386402441|ref|ZP_10087219.1| ribonuclease III [Bradyrhizobium sp. WSM1253]
gi|385743067|gb|EIG63263.1| ribonuclease III [Bradyrhizobium sp. WSM1253]
Length = 283
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 268
>gi|224113343|ref|XP_002316463.1| predicted protein [Populus trichocarpa]
gi|222865503|gb|EEF02634.1| predicted protein [Populus trichocarpa]
Length = 1077
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPI--FTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+LLQ R+G + P Y T H+ F VE GM F G+P + K+ AE +AA
Sbjct: 979 KSLLQTLLMRSGHSPPKYKT-----KHLKTNEFRALVEFKGMQFVGKPKRNKQLAEGDAA 1033
Query: 147 IAAWSALKRMPN 158
I A + L N
Sbjct: 1034 IEALAWLTHTSN 1045
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQEL Q + P Y I GPDH F+ +V +GE S + + A+ A
Sbjct: 155 YKTALQELTQATHGVTPDYEMIGSSGPDHRKEFEVAVKLDGETIASAK-GRSKKAAQQKA 213
Query: 61 AEVALNVL 68
AE+AL L
Sbjct: 214 AEIALQKL 221
>gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110]
gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110]
Length = 273
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 200 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 258
>gi|379795598|ref|YP_005325596.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872588|emb|CCE58927.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 243
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGQAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 ESAYKQLKQI 242
>gi|456862113|gb|EMF80691.1| ribonuclease III [Leptospira weilii serovar Topaz str. LT2116]
Length = 181
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 109 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 167
Query: 61 AE 62
A+
Sbjct: 168 AK 169
>gi|432935587|ref|XP_004082035.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 744
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 129 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQVFEGM-GPTKKKAKLNAAEKAL 185
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 186 RSFVQFPN 193
>gi|452911420|ref|ZP_21960088.1| Ribonuclease III [Kocuria palustris PEL]
gi|452833348|gb|EME36161.1| Ribonuclease III [Kocuria palustris PEL]
Length = 241
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 81 VLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQ 140
V+ E +K +QE A G+ Y +GP H FT + L G P +KK+
Sbjct: 152 VIREGRDWKTEIQELAAMRGMGAVTYEVEGTGPDHNRSFTASCLLGGTVHGTGPGTSKKE 211
Query: 141 AEKNAAIAAWSAL 153
AE+ AA +A+SA+
Sbjct: 212 AERRAAESAYSAI 224
>gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB]
gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB]
Length = 240
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQEL+Q +P Y I E GPDH F++ ++ G I E+ + ++AE A
Sbjct: 166 YKTTLQELSQNRFREIPRYRLIGEYGPDHDKLFESGLSIPG-IIETTGKGKSKKEAEQHA 224
Query: 61 AEVALNVL 68
A AL+ L
Sbjct: 225 AHKALDEL 232
>gi|345328234|ref|XP_001507143.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Ornithorhynchus anatinus]
Length = 695
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 77 LTARVLDETGIYKNLLQETAHRA-GLNLPV--YTTVRSGPGHVPIFTCTVELAGMNFTGE 133
+ RV D+ + K+ + + A N+PV T +GP H+ F V + FTGE
Sbjct: 265 VNGRVPDDENLNKSEISQVFEIALKRNMPVNFEVTKENGPPHMKSFLTKVSVG--EFTGE 322
Query: 134 -PAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
K+KK ++KNAAIA LK++P L ++
Sbjct: 323 GEGKSKKISKKNAAIAVLEELKKLPPLPTV 352
>gi|12849779|dbj|BAB28477.1| unnamed protein product [Mus musculus]
Length = 313
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A + KQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SNKQAKRNAA 185
>gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio
rerio]
Length = 750
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 131 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEGS-GPTKKKAKLNAAEKAL 187
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 188 RSFVQFPN 195
>gi|189043297|sp|A8Z6F6.1|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
Length = 223
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQE+ Q + +P+Y I GPDH F+ ++ NG EI S + ++ +QA+
Sbjct: 155 YKTALQEVTQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEI--SRAVGSSKKQAQQL 212
Query: 60 AAEVAL 65
AA++AL
Sbjct: 213 AAKIAL 218
>gi|416120344|ref|ZP_11594983.1| Ribonuclease III [Campylobacter concisus UNSWCD]
gi|384576845|gb|EIF06166.1| Ribonuclease III [Campylobacter concisus UNSWCD]
Length = 223
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQE+ Q + +P+Y I GPDH F+ ++ NG EI S + ++ +QA+
Sbjct: 155 YKTALQEVTQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEI--SRAVGSSKKQAQQL 212
Query: 60 AAEVAL 65
AA++AL
Sbjct: 213 AAKIAL 218
>gi|151553859|gb|AAI49062.1| STAU1 protein [Bos taurus]
Length = 531
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 65 LNVLSTRGPSRSL--TARVLDETGIYKNLLQETAHRA-GLNLPVYTTV--RSGPGHVPIF 119
L +L + PS L R +E + K+ + + A NLPV V SGP H+ F
Sbjct: 111 LRILQSEPPSERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKSF 170
Query: 120 TCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
V + F GE K+KK ++KNAAIA LK++P L ++
Sbjct: 171 VTRVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTV 212
>gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes]
gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
Length = 698
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 80 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQIFEGM-GPTKKKAKLNAAEKAL 136
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 137 RSFVQFPN 144
>gi|395506867|ref|XP_003757751.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
Staufen homolog 1 [Sarcophilus harrisii]
Length = 687
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 102 NLPV--YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
NLPV T SGP H+ F V + GE K+KK ++KNAAIA LK++P L
Sbjct: 283 NLPVNFEVTRESGPPHMKSFVTKVSVGEFMGEGE-GKSKKISKKNAAIAVLEELKKLPPL 341
Query: 160 DSL 162
++
Sbjct: 342 PTV 344
>gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]
gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio]
Length = 720
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 99 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEGS-GPTKKKAKLNAAEKAL 155
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 156 RSFVQFPN 163
>gi|373252029|ref|ZP_09540147.1| ribonuclease III [Nesterenkonia sp. F]
Length = 227
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K +QE A L Y SGP H FT T+ + G+ ++ K+KK+AE+ AA
Sbjct: 146 WKTTIQEVAADRDLGDIRYVMEDSGPDHDKTFTATLTVGGVAYSSGTGKSKKEAEREAA 204
>gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|122284510|sp|Q053L4.1|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
Length = 247
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQ-WEASGYGASKKIAEQNA 235
Query: 61 AEVALNVLSTRG 72
A+ L + RG
Sbjct: 236 AK-ELYIRIRRG 246
>gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
gi|404489084|ref|YP_006713190.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385589|sp|Q65JQ5.1|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52348075|gb|AAU40709.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
Length = 249
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQE QR + Y ++E GP H F+A+V+ GE+ S + ++AE A
Sbjct: 176 FKSQLQEFVQRDGRGILEYKILQEKGPAHNREFEANVSLKGEVLGVGS-GRSKKEAEQHA 234
Query: 61 AEVALNVL 68
A+ AL L
Sbjct: 235 AQEALAKL 242
>gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45]
gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45]
Length = 227
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 79 ARVLDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKT 137
ARV ++ K LQE A G+ P YT V R GP H P+FT L A +
Sbjct: 149 ARVEEDARDAKTSLQEWAQARGMVPPSYTEVAREGPDHAPVFTIEARLENGAAARATAGS 208
Query: 138 KKQAEKNAAIAAWSALKRMPNLDSLTN 164
K++AE+ AA S L LD +TN
Sbjct: 209 KRKAEQQAA----SGL-----LDKVTN 226
>gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio]
gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio]
Length = 689
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 68 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEGS-GPTKKKAKLNAAEKAL 124
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 125 RSFVQFPN 132
>gi|423682137|ref|ZP_17656976.1| ribonuclease III [Bacillus licheniformis WX-02]
gi|383438911|gb|EID46686.1| ribonuclease III [Bacillus licheniformis WX-02]
Length = 253
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQE QR + Y ++E GP H F+A+V+ GE+ S + ++AE A
Sbjct: 180 FKSQLQEFVQRDGRGILEYKILQEKGPAHNREFEANVSLKGEVLGVGS-GRSKKEAEQHA 238
Query: 61 AEVALNVL 68
A+ AL L
Sbjct: 239 AQEALAKL 246
>gi|421100758|ref|ZP_15561379.1| ribonuclease III [Leptospira borgpetersenii str. 200901122]
gi|410796156|gb|EKR98294.1| ribonuclease III [Leptospira borgpetersenii str. 200901122]
Length = 247
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYYMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 235
Query: 61 AE 62
A+
Sbjct: 236 AK 237
>gi|326931869|ref|XP_003212046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 2 [Meleagris gallopavo]
Length = 684
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 102 NLPV--YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
NLPV T SGP H+ F V + GE K+KK ++KNAAIA LK++P L
Sbjct: 281 NLPVNFEVTKESGPPHMKSFVTKVSVGEFMGEGE-GKSKKISKKNAAIAVLEELKKLPPL 339
Query: 160 DSL 162
++
Sbjct: 340 PTV 342
>gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio]
Length = 720
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 99 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEGS-GPTKKKAKLNAAEKAL 155
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 156 RSFVQFPN 163
>gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2]
Length = 262
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G + T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQGNL-RGKGIGRTKKEAEQRAA 249
Query: 62 EVALN 66
+ L+
Sbjct: 250 QQVLD 254
>gi|30179749|sp|O69161.2|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 250
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 177 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 235
>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
Length = 237
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEI 43
+K LQE +QR +PSY I+E GPDH F+ +V N E+
Sbjct: 163 FKTILQEFSQREYKVIPSYEVIKEMGPDHRKSFEIAVKINDEL 205
>gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum]
Length = 231
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V+L G+ +K+ AEK AA
Sbjct: 158 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 216
>gi|408500585|ref|YP_006864504.1| ribonuclease III [Bifidobacterium asteroides PRL2011]
gi|408465409|gb|AFU70938.1| ribonuclease III [Bifidobacterium asteroides PRL2011]
Length = 268
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 54 RQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP 113
R H + L ++T GP+ LD +K + AH+ GL P YT SGP
Sbjct: 163 RTTVHTLLDDTLAEVATEGPA-------LD----WKTSITVKAHKLGLGEPRYTMAVSGP 211
Query: 114 GHVPIFTCTVELA-GMNFTGEP-AKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDK 169
+ +FT + L G G+ A +K++A+ AA W KR+ + D L T++
Sbjct: 212 EYAQVFTAELRLEDGGTVIGKGRASSKRKAQLAAAAQGW---KRLDDQDLLKTLRTEQ 266
>gi|348579304|ref|XP_003475420.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Cavia porcellus]
Length = 1137
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 26/155 (16%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F + S + + A+ AAE A+ L + S
Sbjct: 573 KEGPAHDPKFQYCVAVGAQTFPTVS-APSKKVAKQMAAEEAMKALHEEATNAADNQSGDT 631
Query: 78 TARVLD--ETGIYKNL-----------------LQETAHRAGLNLPVYTTVRSGPGHVPI 118
+ LD E+G+ N+ L E A G +SGP H P
Sbjct: 632 NSESLDTLESGVPNNIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPK 691
Query: 119 FTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
F ++ G F A +KKQ ++ AA AA L
Sbjct: 692 FVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 726
>gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37]
gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37]
Length = 225
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 77 LTARVLDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPA 135
L A V ++ K LQE A G+ P YT V RSGP H P+FT LA TGE A
Sbjct: 147 LIASVEEDAKDAKTTLQEWAQGRGMTPPSYTEVERSGPDHAPVFTIEARLA----TGETA 202
Query: 136 K 136
+
Sbjct: 203 R 203
>gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 181 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQIFEGM-GPTKKKAKLNAAEKAL 237
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 238 RSFVQFPN 245
>gi|423074940|ref|ZP_17063660.1| ribonuclease III [Desulfitobacterium hafniense DP7]
gi|361854146|gb|EHL06251.1| ribonuclease III [Desulfitobacterium hafniense DP7]
Length = 262
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G + T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQGNL-RGKGIGRTKKEAEQRAA 249
Query: 62 EVALN 66
+ L+
Sbjct: 250 QQVLD 254
>gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
Length = 272
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL PVY V R+GP H P F V L G+ +K+ AEK AA
Sbjct: 198 KTVLQEWAQARGLPTPVYREVERTGPHHDPQFRVAVVLPGLEPAEGVGGSKRAAEKVAAS 257
Query: 148 A 148
A
Sbjct: 258 A 258
>gi|365154598|ref|ZP_09351029.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
gi|363649573|gb|EHL88682.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
Length = 223
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQE+ Q + +P+Y I GPDH F+ ++ NG EI S + ++ +QA+
Sbjct: 155 YKTALQEVTQANLGVIPTYELISSFGPDHKKEFEIALLLNGKEI--SRAVGSSKKQAQQL 212
Query: 60 AAEVAL 65
AA++AL
Sbjct: 213 AAKIAL 218
>gi|402820690|ref|ZP_10870256.1| hypothetical protein IMCC14465_14900 [alpha proteobacterium
IMCC14465]
gi|402510490|gb|EJW20753.1| hypothetical protein IMCC14465_14900 [alpha proteobacterium
IMCC14465]
Length = 237
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE R GL LP Y + + GP H P+ + V L A +KK+AE AA
Sbjct: 164 KSDLQEYTSREGLGLPTYKVIDTTGPDHAPVISVEVALDNGTRVCAQAGSKKKAEIEAAQ 223
Query: 148 AAWSALK 154
+ LK
Sbjct: 224 SLLEVLK 230
>gi|395645479|ref|ZP_10433339.1| ribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442219|gb|EJG06976.1| ribonuclease III [Methanofollis liminatans DSM 4140]
Length = 235
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 NQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
+LQE Q+ LP Y + R+GPDH P F ++V G F + + A+ AA
Sbjct: 167 GRLQERLQQERLGLPEYLIVSRDGPDHDPTFVSAVTVAGH-FSAFGSGGSKAGAKKEAAR 225
Query: 63 VALNVLST 70
VAL VL T
Sbjct: 226 VALEVLET 233
>gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
gi|90101634|sp|Q4FLS9.1|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
Length = 222
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 74 SRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTG 132
S +TA V+ + K LQE + + LP+Y + +GP H P+F V+L F
Sbjct: 140 SEHITASVITQID-AKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLKNTKFFT 198
Query: 133 EPAKTKKQAEKNAA 146
+KK AE+NAA
Sbjct: 199 AEGTSKKDAEQNAA 212
>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
musculus]
gi|38372251|sp|Q99MU3.2|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=RNA adenosine deaminase 1
gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
Length = 1178
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
Length = 1152
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes]
Length = 750
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F TVE+ G F G TKK+A+ NAA A
Sbjct: 132 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQIFEGM-GPTKKKAKLNAAEKAL 188
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 189 RSFVQFPN 196
>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1178
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
Length = 1152
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
Length = 234
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G P Y+ + R+GP H P+F V + G ++K+ AE++AA
Sbjct: 160 KTELQEWAHQQGNVHPAYSIISRTGPDHDPLFMVEVTVKGFAAETGEGRSKRIAEQHAAE 219
Query: 148 A 148
A
Sbjct: 220 A 220
>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
Length = 228
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE+ Q++ SY + E GPDH F+A V+ N + + S + +QAE A
Sbjct: 157 YKTALQEIIQKNPEEKLSYVLVSESGPDHDKMFEAEVHLNSNVIGTGS-GKSKKQAEQNA 215
Query: 61 AEVALNVLS 69
A+ AL ++
Sbjct: 216 AKQALELMG 224
>gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51]
gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 262
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G + T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQGNL-RGKGIGRTKKEAEQRAA 249
Query: 62 EVALN 66
+ L+
Sbjct: 250 QQVLD 254
>gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11]
gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11]
Length = 222
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ P+Y + R+GPDH P F SV + E + + RQAE AAA
Sbjct: 153 KTTLQEFAQARGEQPPTYVLVERKGPDHQPEFTISVQLQ-DGTEGRATAGSKRQAEQAAA 211
Query: 62 EVALNVL 68
+ L L
Sbjct: 212 KSLLARL 218
>gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5]
gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5]
Length = 271
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL PVY V R+GP H P F V L G+ +K+ AEK AA
Sbjct: 197 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVSLPGLEPAEGVGGSKRAAEKVAA 255
>gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|418720931|ref|ZP_13280119.1| ribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|418735079|ref|ZP_13291491.1| ribonuclease III [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|421095924|ref|ZP_15556632.1| ribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|122280610|sp|Q04R64.1|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|410361339|gb|EKP12384.1| ribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|410742410|gb|EKQ91158.1| ribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|410749335|gb|EKR02227.1| ribonuclease III [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456886971|gb|EMF98072.1| ribonuclease III [Leptospira borgpetersenii str. 200701203]
Length = 247
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQ-WEASGYGASKKIAEQNA 235
Query: 61 AEVALNVLSTRG 72
A+ L + RG
Sbjct: 236 AK-ELYIRIRRG 246
>gi|395791246|ref|ZP_10470704.1| ribonuclease 3 [Bartonella alsatica IBS 382]
gi|395408609|gb|EJF75219.1| ribonuclease 3 [Bartonella alsatica IBS 382]
Length = 235
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH G P Y + RSGP H P+F V +AG +K+ AE+ I
Sbjct: 158 KTELQEWAHMQGNAQPYYRVINRSGPDHDPVFMVEVSIAGFAPEIGQGSSKRYAER---I 214
Query: 148 AAWSALKR 155
AA L+R
Sbjct: 215 AAEKILRR 222
>gi|290985188|ref|XP_002675308.1| predicted protein [Naegleria gruberi]
gi|284088903|gb|EFC42564.1| predicted protein [Naegleria gruberi]
Length = 599
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 100 GLNL-PVYTTVRSGPGHVPIFTCTVELAGMNFTGE--PAKTKKQAEKNAAIAAWSALKRM 156
G N+ P Y GP H+ F C ++L+ + T + KTKK+A+KNA + +L ++
Sbjct: 522 GQNMKPTYIETCYGPSHITSFRCEIDLSALKLTNQIGDGKTKKEAKKNACTKSCISLDQI 581
>gi|399991331|ref|YP_006571571.1| ribonuclease 3 [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398655886|gb|AFO89852.1| ribonuclease 3 [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
Length = 228
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ P+Y + R GPDH P F SV + E + + RQAE AAA
Sbjct: 159 KTTLQEFAQARGEQPPAYVLVERTGPDHQPEFTISVQLQ-DGTEGRATAGSKRQAEQAAA 217
Query: 62 EVALNVL 68
+ L L
Sbjct: 218 KFLLARL 224
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G P Y V R+GP H P FT +V+L A +K+QAE+ AA
Sbjct: 159 KTTLQEFAQARGEQPPAYVLVERTGPDHQPEFTISVQLQDGTEGRATAGSKRQAEQAAA 217
>gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547]
gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547]
Length = 228
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGE 42
+K LQEL LP Y GPDHA F+A+ GE
Sbjct: 159 WKTSLQELGSARGLGLPEYRITDSGPDHAKLFEATAVLGGE 199
>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
musculus]
gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
Length = 1152
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|444311650|ref|ZP_21147254.1| ribonuclease III [Ochrobactrum intermedium M86]
gi|443484980|gb|ELT47778.1| ribonuclease III [Ochrobactrum intermedium M86]
Length = 234
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G P Y+ + R+GP H P+F V + G ++K+ AE++AA
Sbjct: 160 KTELQEWAHQQGNVHPAYSIISRTGPDHDPLFMVEVTVKGFAAETGEGRSKRIAEQHAAE 219
Query: 148 A 148
A
Sbjct: 220 A 220
>gi|406909765|gb|EKD49949.1| Ribonuclease III [uncultured bacterium]
Length = 229
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 3 KNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K+Q QE+ Q P+Y + E GPDHA +F+ V N E+ + ++ ++AE AA
Sbjct: 162 KSQFQEIVQEKVGVTPTYETLSESGPDHAKKFEIGVYINSELI-AKGEGSSKQKAEEDAA 220
Query: 62 EVAL 65
+ AL
Sbjct: 221 KQAL 224
>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
Length = 1173
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|327271788|ref|XP_003220669.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 2 [Anolis carolinensis]
Length = 693
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 102 NLPV--YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
NLPV T SGP H+ F V + GE K+KK ++KNAAIA LK++P L
Sbjct: 291 NLPVNFEVTRESGPPHMKSFVTKVSVGEFMGEGE-GKSKKISKKNAAIAVLEELKKLPPL 349
Query: 160 DSL 162
++
Sbjct: 350 PTV 352
>gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330]
gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308]
gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365]
gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445]
gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19]
gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457]
gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
63/9]
gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915]
gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94]
gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33]
gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1]
gi|340790294|ref|YP_004755759.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|376280341|ref|YP_005154347.1| ribonuclease III [Brucella suis VBI22]
gi|384224335|ref|YP_005615499.1| ribonuclease III [Brucella suis 1330]
gi|54039241|sp|P66665.1|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54041613|sp|P66664.1|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|75497081|sp|Q57E81.1|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|90101615|sp|Q2YN02.1|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043295|sp|A9MA35.1|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043296|sp|B0CKY7.1|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238691497|sp|B2SAD9.1|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807239|sp|C0RI03.1|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M]
gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330]
gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
[Brucella melitensis biovar Abortus 2308]
gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365]
gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445]
gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19]
gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457]
gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915]
gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94]
gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33]
gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1]
gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
63/9]
gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
gi|340558753|gb|AEK53991.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|343382515|gb|AEM18007.1| ribonuclease III [Brucella suis 1330]
gi|358257940|gb|AEU05675.1| ribonuclease III [Brucella suis VBI22]
Length = 245
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G PVY + RSGP H P+F V + G ++K+ AE++AA
Sbjct: 171 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEGRSKRIAEQSAAE 230
Query: 148 A 148
A
Sbjct: 231 A 231
>gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca
mulatta]
Length = 504
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 130 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 185
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 186 LRSFVQFPN 194
>gi|410953576|ref|XP_003983446.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 2 [Felis catus]
gi|410953578|ref|XP_003983447.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 3 [Felis catus]
Length = 577
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKSFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPTV 258
>gi|282856560|ref|ZP_06265833.1| double-stranded RNA-binding domain protein [Pyramidobacter
piscolens W5455]
gi|282585603|gb|EFB90898.1| double-stranded RNA-binding domain protein [Pyramidobacter
piscolens W5455]
Length = 365
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Query: 24 REGPDHAPRFKASVNFNG-EIFES--PSYCTTLRQAEHAAAEVALNVLSTRGPS--RSLT 78
+EGP+H P F A+ NG + E+ PS L+ + A + RG R L
Sbjct: 26 KEGPEHKPVFTAAAFRNGARVAEAGGPSKKDALKALVREVGKAAARQ-TKRGADAFRDLE 84
Query: 79 ARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAG---MNFTGEPA 135
L + K LQ R G+ P Y + S G P+F ++L+G +N +G+
Sbjct: 85 LAGLKNSPELKGRLQTCCERLGIGQPHYVDLPSPGGKNPLFFVELQLSGEPIVNGSGQSK 144
Query: 136 KTKKQAEKNAAIAAWSALKRMPNLDSLTNKE---TDKPEEQDQAIVARVLSNFRA 187
+ QA AAW L+ + D+L E D P+ + R+ S FRA
Sbjct: 145 RAAGQA------AAWKMLQLLAA-DALGESERLNADLPQ-----LRTRLESAFRA 187
>gi|407782700|ref|ZP_11129910.1| dsRNA-specific ribonuclease [Oceanibaculum indicum P24]
gi|407205358|gb|EKE75331.1| dsRNA-specific ribonuclease [Oceanibaculum indicum P24]
Length = 233
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAK----TKKQAEK 143
K LQE A GL LP Y V R GP H P+FT V + G EPA+ +K+ AE+
Sbjct: 162 KTGLQEWAQGRGLPLPSYREVGREGPAHQPVFTVEVTVKGQ----EPAEGTGPSKRVAEQ 217
Query: 144 NAAIA 148
AA A
Sbjct: 218 QAAQA 222
>gi|418309743|ref|ZP_12921294.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
gi|365237866|gb|EHM78705.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
Length = 243
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHRRLFTSEVILQGEAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 ESAYKQLKQI 242
>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
Length = 244
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE + + P Y+ V+ +GP H F V++ G + K KK+AE++AA
Sbjct: 173 YKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAA 232
Query: 147 IAAWSAL 153
A+ L
Sbjct: 233 GLAYRKL 239
>gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior]
Length = 673
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 6 LQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVAL 65
L EL + +N+ T GP HAP F +V +G+ +E T + A+HAAAE+AL
Sbjct: 100 LNELKTGATYNVVGQT----GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 153
Query: 66 -NVLSTR 71
N++ R
Sbjct: 154 RNIVQFR 160
>gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50]
gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3]
gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|22654068|sp|Q931T1.1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043357|sp|A7X1J9.1|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50]
gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3]
Length = 243
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 KSAYKQLKQI 242
>gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus]
Length = 1152
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS----RSLTA 79
+EGP H P+F+ V + F P + + A+ AAE A+ L S +S A
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDKSGGA 648
Query: 80 --------------RVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ ++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGRQDAADAALRVL 741
>gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46]
gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46]
Length = 244
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K+ LQE A GL P Y V R+GP H PIF +AG+ + +K+ AE+ AA
Sbjct: 167 KSALQEWAQGLGLPTPTYAVVERAGPDHAPIFRIEARVAGVAPSLGVGGSKRLAEQEAA 225
>gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5]
gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5]
Length = 247
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQEL+Q S P Y RE GPDH F S+ + +++ T+ + AE A
Sbjct: 168 YKTELQELSQGSLSLAPEYRVEREWGPDHQKHFAVSLYLHDQVY-GHGEGTSKKSAEQKA 226
Query: 61 AEVALNVL 68
A A+ L
Sbjct: 227 ARAAMEKL 234
>gi|410953574|ref|XP_003983445.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 1 [Felis catus]
Length = 496
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKSFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPTV 177
>gi|149733337|ref|XP_001503607.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Equus caballus]
Length = 577
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKSFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 L 159
L
Sbjct: 255 L 255
>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
Length = 240
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+L+QE + GL P Y + + GP H+PIFT +++ G + + K AE +
Sbjct: 169 KSLIQEETQKRGLGQPCYVVISTEGPPHMPIFTVQLKIDGQLYGSGQGHSIKVAE---TL 225
Query: 148 AAWSALKRM 156
AA ALK++
Sbjct: 226 AAQRALKQV 234
>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
Length = 254
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQE R LP Y T +SGP H +F V + N+ +KK+AE+ AA
Sbjct: 169 YKTQLQEYCQRELETLPQYVITGQSGPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAA 228
Query: 147 IAAWSALKR 155
+A + R
Sbjct: 229 KSALERIAR 237
>gi|124026759|ref|YP_001015874.1| ribonuclease III [Prochlorococcus marinus str. NATL1A]
gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
Length = 247
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHV--PIFTCTVELAGMNFTGEPAKTKKQAEKNA 145
YK+ LQE GL++P+Y T H F C V + + K+ KQAEKNA
Sbjct: 173 YKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFCNVYVKNRSIAEGSGKSMKQAEKNA 232
Query: 146 AIAAWSALKRMPN 158
A ALK N
Sbjct: 233 AS---KALKYFEN 242
>gi|408828137|ref|ZP_11213027.1| ribonuclease III [Streptomyces somaliensis DSM 40738]
Length = 257
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 138 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 148 AAWSALK 154
AAW A++
Sbjct: 198 AAWRAIR 204
>gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2 [Callithrix
jacchus]
Length = 998
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 386 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 441
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 442 LRSFVQFPN 450
>gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
Length = 238
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A G LP Y V R+G H P FT + G +++++AEK AAI
Sbjct: 170 KSALQEWAQGQGRPLPTYEVVQRTGSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAAAI 229
Query: 148 A 148
A
Sbjct: 230 A 230
>gi|297852484|ref|XP_002894123.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297339965|gb|EFH70382.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
KN LQ RAG PVY T + F V G++F G+P +KK AEK+AA
Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRAMVTFNGLDFMGKPCGSKKNAEKDAAHE 1158
Query: 149 A--W------SALKRMPNLDSLTNKETDKPEEQ 173
A W S+L + ++ L K K Q
Sbjct: 1159 ALLWLQGESKSSLNDLNHMSILLKKNKSKKTAQ 1191
>gi|345790172|ref|XP_867111.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 6 [Canis lupus familiaris]
Length = 503
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 123 NLPVNFEVARESGPPHMKSFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 180
Query: 159 LDSL 162
L ++
Sbjct: 181 LPTV 184
>gi|398342486|ref|ZP_10527189.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 218
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K LQE QR LP+Y I+E GPDHA F SV +E+ + AE A
Sbjct: 148 FKTLLQETCQRKFKLLPTYRLIQESGPDHAKTFLVSVRIRDR-YEAEGTGRNKKFAEQDA 206
Query: 61 AEVALNVLSTR 71
A L VL +
Sbjct: 207 ARKMLKVLGIK 217
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
Query: 15 FNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
L Y + +G K + +FES L Q A ++ LN L +
Sbjct: 82 LKLSDYVLLGKGEGQGSSQK---KLSANLFESLIGAIYLDQGLEIAEKIILNHLIAFAEN 138
Query: 75 RSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGE 133
V D +K LLQET R LP Y ++ SGP H F +V +
Sbjct: 139 PEKMESVKD----FKTLLQETCQRKFKLLPTYRLIQESGPDHAKTFLVSVRIRDRYEAEG 194
Query: 134 PAKTKKQAEKNAA 146
+ KK AE++AA
Sbjct: 195 TGRNKKFAEQDAA 207
>gi|359727275|ref|ZP_09265971.1| ribonuclease III [Leptospira weilii str. 2006001855]
Length = 266
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 252
Query: 61 AE 62
A+
Sbjct: 253 AK 254
>gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella inopinata BO1]
gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella inopinata BO1]
Length = 257
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G PVY + RSGP H P+F V + G ++K+ AE++AA
Sbjct: 183 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEGRSKRIAEQSAAE 242
Query: 148 A 148
A
Sbjct: 243 A 243
>gi|407777101|ref|ZP_11124372.1| ribonuclease III [Nitratireductor pacificus pht-3B]
gi|407301266|gb|EKF20387.1| ribonuclease III [Nitratireductor pacificus pht-3B]
Length = 239
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE AH+ PVY R GP H PIF+ V + G ++K++AE+ AA
Sbjct: 164 KTTLQEWAHQVSGATPVYAVEDRQGPDHDPIFSIAVRVKGYKPAHGRGRSKREAEQAAA 222
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+ LQE R G + Y + GP H F V L+G ++KK+AE++AA
Sbjct: 176 YKSQLQELVQRDGTGMIEYKVLHEKGPAHNREFVSRVSLSGDELGTGTGRSKKEAEQHAA 235
Query: 147 IAAWSALKR 155
A LK+
Sbjct: 236 QMALEKLKK 244
>gi|397515135|ref|XP_003827815.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2 [Pan paniscus]
Length = 739
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 130 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 185
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 186 LRSFVQFPN 194
>gi|418922815|ref|ZP_13476732.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
gi|377736138|gb|EHT60168.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
Length = 243
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 ESAYKQLKQI 242
>gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840]
gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653]
gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2]
gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840]
gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2]
gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653]
Length = 257
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G PVY + RSGP H P+F V + G ++K+ AE++AA
Sbjct: 183 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEGRSKRIAEQSAAE 242
Query: 148 A 148
A
Sbjct: 243 A 243
>gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122]
gi|90101646|sp|Q2YXI3.1|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122]
Length = 243
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 ESAYKQLKQI 242
>gi|417782087|ref|ZP_12429820.1| ribonuclease III [Leptospira weilii str. 2006001853]
gi|410777680|gb|EKR62325.1| ribonuclease III [Leptospira weilii str. 2006001853]
Length = 266
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 252
Query: 61 AE 62
A+
Sbjct: 253 AK 254
>gi|395829163|ref|XP_003787730.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Otolemur garnettii]
Length = 577
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQE + P YT V+ +GP H F V++ ++F + KK+AE+NAA
Sbjct: 176 YKTSLQEYMQKRWRKCPTYTLVKKTGPEHDFTFFVEVKVNDLSFGPAKGRNKKEAEQNAA 235
Query: 147 IAAWSAL 153
A+ ++
Sbjct: 236 KLAYDSV 242
>gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A]
gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038]
gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1]
gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1]
gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513]
gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686]
gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99]
gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13]
gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026]
gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
gi|376273608|ref|YP_005152186.1| ribonuclease III [Brucella abortus A13334]
gi|376274588|ref|YP_005115027.1| ribonuclease III [Brucella canis HSK A52141]
gi|384211045|ref|YP_005600127.1| ribonuclease III [Brucella melitensis M5-90]
gi|384408136|ref|YP_005596757.1| Ribonuclease III family [Brucella melitensis M28]
gi|384444751|ref|YP_005603470.1| ribonuclease III [Brucella melitensis NI]
gi|423167200|ref|ZP_17153903.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI435a]
gi|423170423|ref|ZP_17157098.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI474]
gi|423173496|ref|ZP_17160167.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI486]
gi|423177219|ref|ZP_17163865.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI488]
gi|423179854|ref|ZP_17166495.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI010]
gi|423182986|ref|ZP_17169623.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI016]
gi|423186072|ref|ZP_17172686.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI021]
gi|423189211|ref|ZP_17175821.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI259]
gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A]
gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038]
gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1]
gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1]
gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99]
gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513]
gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686]
gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13]
gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026]
gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28]
gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90]
gi|349742747|gb|AEQ08290.1| ribonuclease III [Brucella melitensis NI]
gi|363401214|gb|AEW18184.1| ribonuclease III [Brucella abortus A13334]
gi|363403155|gb|AEW13450.1| ribonuclease III [Brucella canis HSK A52141]
gi|374541349|gb|EHR12845.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI474]
gi|374541623|gb|EHR13117.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI435a]
gi|374542825|gb|EHR14312.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI486]
gi|374549699|gb|EHR21141.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI010]
gi|374550218|gb|EHR21657.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI016]
gi|374551726|gb|EHR23158.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI488]
gi|374557754|gb|EHR29149.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI259]
gi|374559460|gb|EHR30848.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI021]
Length = 234
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH+ G PVY + RSGP H P+F V + G ++K+ AE++AA
Sbjct: 160 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEGRSKRIAEQSAAE 219
Query: 148 A 148
A
Sbjct: 220 A 220
>gi|355563051|gb|EHH19613.1| Double-stranded RNA-binding protein Staufen-like protein 1 [Macaca
mulatta]
gi|355784408|gb|EHH65259.1| Double-stranded RNA-binding protein Staufen-like protein 1 [Macaca
fascicularis]
Length = 573
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315]
gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2]
gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252]
gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476]
gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781]
gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763]
gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719]
gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635]
gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299]
gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115]
gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300]
gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224]
gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937]
gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30]
gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3]
gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117]
gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765]
gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102]
gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132]
gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754]
gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819]
gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1]
gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796]
gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379014424|ref|YP_005290660.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|379020942|ref|YP_005297604.1| ribonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|384547477|ref|YP_005736730.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
gi|384549988|ref|YP_005739240.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384861827|ref|YP_005744547.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384864460|ref|YP_005749819.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384867884|ref|YP_005748080.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|384869767|ref|YP_005752481.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
gi|385781461|ref|YP_005757632.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|386728916|ref|YP_006195299.1| ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
gi|386830768|ref|YP_006237422.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387142842|ref|YP_005731235.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
TW20]
gi|387150376|ref|YP_005741940.1| Ribonuclease III [Staphylococcus aureus 04-02981]
gi|387602508|ref|YP_005734029.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|387780342|ref|YP_005755140.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
LGA251]
gi|404478573|ref|YP_006710003.1| ribonuclease III [Staphylococcus aureus 08BA02176]
gi|415683823|ref|ZP_11449025.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
gi|415686422|ref|ZP_11450511.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
gi|415691082|ref|ZP_11453321.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
gi|416839277|ref|ZP_11902671.1| ribonuclease III [Staphylococcus aureus O11]
gi|416847441|ref|ZP_11907163.1| ribonuclease III [Staphylococcus aureus O46]
gi|417650101|ref|ZP_12299878.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|417651508|ref|ZP_12301271.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|417653242|ref|ZP_12302976.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|417797282|ref|ZP_12444480.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|417797852|ref|ZP_12445038.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|417802647|ref|ZP_12449704.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|417887065|ref|ZP_12531204.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|417891736|ref|ZP_12535793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|417892225|ref|ZP_12536279.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|417896147|ref|ZP_12540114.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
gi|417899962|ref|ZP_12543861.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|417901830|ref|ZP_12545706.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|417903389|ref|ZP_12547236.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
gi|418281364|ref|ZP_12894175.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|418282895|ref|ZP_12895652.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|418286395|ref|ZP_12899041.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|418308712|ref|ZP_12920318.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|418312603|ref|ZP_12924112.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|418316130|ref|ZP_12927574.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
gi|418317682|ref|ZP_12929098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|418321917|ref|ZP_12933256.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|418424373|ref|ZP_12997495.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
gi|418427368|ref|ZP_13000380.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
gi|418430209|ref|ZP_13003125.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433174|ref|ZP_13005951.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
gi|418436845|ref|ZP_13008647.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
gi|418439717|ref|ZP_13011424.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
gi|418442769|ref|ZP_13014371.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
gi|418445828|ref|ZP_13017304.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
gi|418448772|ref|ZP_13020164.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
gi|418451596|ref|ZP_13022930.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
gi|418454652|ref|ZP_13025914.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457528|ref|ZP_13028731.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
gi|418561408|ref|ZP_13125899.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|418566585|ref|ZP_13130958.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|418569081|ref|ZP_13133421.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|418570863|ref|ZP_13135124.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|418572298|ref|ZP_13136510.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|418579064|ref|ZP_13143159.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|418582067|ref|ZP_13146145.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597732|ref|ZP_13161254.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|418599612|ref|ZP_13163092.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|418603104|ref|ZP_13166495.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|418638013|ref|ZP_13200316.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|418642636|ref|ZP_13204822.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|418645812|ref|ZP_13207930.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|418647514|ref|ZP_13209578.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|418649495|ref|ZP_13211523.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|418654805|ref|ZP_13216701.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|418655394|ref|ZP_13217257.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|418658909|ref|ZP_13220606.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|418661553|ref|ZP_13223138.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|418873581|ref|ZP_13427876.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|418875168|ref|ZP_13429428.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|418878082|ref|ZP_13432317.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880910|ref|ZP_13435129.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883839|ref|ZP_13438034.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886494|ref|ZP_13440642.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|418889024|ref|ZP_13443160.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|418891866|ref|ZP_13445981.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|418894932|ref|ZP_13449027.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|418897770|ref|ZP_13451840.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900640|ref|ZP_13454697.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|418903442|ref|ZP_13457483.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906168|ref|ZP_13460195.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418908944|ref|ZP_13462947.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|418911840|ref|ZP_13465823.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|418914331|ref|ZP_13468303.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418917028|ref|ZP_13470987.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|418920310|ref|ZP_13474243.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|418925466|ref|ZP_13479368.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928490|ref|ZP_13482376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|418931303|ref|ZP_13485144.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|418934135|ref|ZP_13487958.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|418946941|ref|ZP_13499340.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|418950559|ref|ZP_13502723.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
gi|418955496|ref|ZP_13507436.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|418980062|ref|ZP_13527850.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|418982146|ref|ZP_13529854.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|418985813|ref|ZP_13533499.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|418988054|ref|ZP_13535727.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|418991095|ref|ZP_13538756.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|419774363|ref|ZP_14300333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|419784967|ref|ZP_14310725.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|421150119|ref|ZP_15609775.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|422742350|ref|ZP_16796356.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745536|ref|ZP_16799475.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|424768083|ref|ZP_18195376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|424785063|ref|ZP_18211866.1| Ribonuclease III [Staphylococcus aureus CN79]
gi|440706059|ref|ZP_20886808.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|440734679|ref|ZP_20914291.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|443636860|ref|ZP_21120953.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|443639588|ref|ZP_21123594.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
gi|448742261|ref|ZP_21724211.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|448744051|ref|ZP_21725955.1| ribonuclease III [Staphylococcus aureus KT/Y21]
gi|54039243|sp|P66669.1|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54041615|sp|P66668.1|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56749389|sp|Q6G9Y0.1|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56749418|sp|Q6GHK2.1|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73917582|sp|Q5HGJ9.1|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|122539710|sp|Q2FZ50.1|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|123486215|sp|Q2FHK5.1|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043358|sp|A6U152.1|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043359|sp|A5ISB8.1|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043360|sp|A6QGD3.1|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043361|sp|A8Z3R9.1|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315]
gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2]
gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9]
gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781]
gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763]
gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719]
gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635]
gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299]
gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115]
gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300]
gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224]
gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937]
gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3]
gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30]
gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
TW20]
gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102]
gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765]
gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117]
gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981]
gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754]
gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819]
gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796]
gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11]
gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46]
gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|334267330|gb|EGL85794.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|334274283|gb|EGL92605.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|334276974|gb|EGL95213.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|341841048|gb|EGS82520.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
gi|341843570|gb|EGS84793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|341845669|gb|EGS86871.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|341850010|gb|EGS91143.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
gi|341851022|gb|EGS91951.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|341858192|gb|EGS98993.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|341858487|gb|EGS99277.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|344177444|emb|CCC87912.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830251|gb|AEV78229.1| Ribonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|364522450|gb|AEW65200.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|365165186|gb|EHM57014.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|365167103|gb|EHM58579.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|365168492|gb|EHM59830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|365224532|gb|EHM65797.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|365237738|gb|EHM78581.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|365238248|gb|EHM79085.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|365241801|gb|EHM82536.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
gi|365244950|gb|EHM85602.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|371969855|gb|EHO87293.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|371977619|gb|EHO94883.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|371978266|gb|EHO95516.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|371983043|gb|EHP00191.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|371984782|gb|EHP01891.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|374363121|gb|AEZ37226.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|374393794|gb|EHQ65098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|374393833|gb|EHQ65136.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|374396270|gb|EHQ67511.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|375014630|gb|EHS08311.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|375015749|gb|EHS09393.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|375022345|gb|EHS15828.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|375023237|gb|EHS16700.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|375029480|gb|EHS22807.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|375029868|gb|EHS23193.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|375037171|gb|EHS30223.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|375037264|gb|EHS30309.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|375038735|gb|EHS31696.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|375366118|gb|EHS70130.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|375370979|gb|EHS74771.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|375376731|gb|EHS80250.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
gi|375377138|gb|EHS80628.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|377694204|gb|EHT18569.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|377694738|gb|EHT19102.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|377697091|gb|EHT21446.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|377703108|gb|EHT27424.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704427|gb|EHT28736.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705631|gb|EHT29935.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|377710477|gb|EHT34715.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|377714585|gb|EHT38784.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|377714926|gb|EHT39124.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|377719842|gb|EHT44012.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|377723217|gb|EHT47342.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725218|gb|EHT49333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|377725447|gb|EHT49560.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|377731198|gb|EHT55255.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|377731803|gb|EHT55856.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|377738402|gb|EHT62411.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742457|gb|EHT66442.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744535|gb|EHT68512.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|377750202|gb|EHT74140.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|377753982|gb|EHT77892.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|377754534|gb|EHT78443.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|377757833|gb|EHT81721.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377760805|gb|EHT84681.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|377765468|gb|EHT89318.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377765669|gb|EHT89518.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|377770228|gb|EHT93990.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|377770878|gb|EHT94637.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|379992225|gb|EIA13682.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|383363568|gb|EID40900.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|383971889|gb|EID87951.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|384230209|gb|AFH69456.1| Ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
gi|385196160|emb|CCG15781.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387718604|gb|EIK06562.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
gi|387718955|gb|EIK06911.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
gi|387720280|gb|EIK08192.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
gi|387725614|gb|EIK13218.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
gi|387727949|gb|EIK15449.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
gi|387730679|gb|EIK18040.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
gi|387735756|gb|EIK22866.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
gi|387737434|gb|EIK24500.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
gi|387737988|gb|EIK25042.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
gi|387744477|gb|EIK31241.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
gi|387745767|gb|EIK32517.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
gi|387747260|gb|EIK33969.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
gi|394329509|gb|EJE55611.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|402348720|gb|EJU83699.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|404440062|gb|AFR73255.1| putative ribonuclease III [Staphylococcus aureus 08BA02176]
gi|408423428|emb|CCJ10839.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408425418|emb|CCJ12805.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408427406|emb|CCJ14769.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408429393|emb|CCJ26558.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408431381|emb|CCJ18696.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408433375|emb|CCJ20660.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408435366|emb|CCJ22626.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408437351|emb|CCJ24594.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|421956473|gb|EKU08802.1| Ribonuclease III [Staphylococcus aureus CN79]
gi|436431707|gb|ELP29060.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436507590|gb|ELP43270.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|443406795|gb|ELS65366.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
gi|443406837|gb|ELS65407.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|445546976|gb|ELY15252.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|445562647|gb|ELY18814.1| ribonuclease III [Staphylococcus aureus KT/Y21]
Length = 243
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 ESAYKQLKQI 242
>gi|407974586|ref|ZP_11155495.1| ribonuclease III [Nitratireductor indicus C115]
gi|407430275|gb|EKF42950.1| ribonuclease III [Nitratireductor indicus C115]
Length = 243
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE AH+ P YT R GP H PIF+ V + G ++K++AE+ AA
Sbjct: 168 KTALQEWAHQVSGATPAYTIENREGPDHDPIFSVAVRVKGYEPAHGSGRSKREAEQTAA 226
>gi|403282329|ref|XP_003932604.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Saimiri boliviensis boliviensis]
Length = 577
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPTV 258
>gi|379737165|ref|YP_005330671.1| ribonuclease 3 [Blastococcus saxobsidens DD2]
gi|378784972|emb|CCG04643.1| Ribonuclease 3 [Blastococcus saxobsidens DD2]
Length = 261
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 32/66 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL P Y GP H FT V LAG+ +TKK AE+ AA
Sbjct: 193 WKTSLQELGAAQGLGAPTYQVDDEGPDHAKTFTAAVLLAGIVRGTGSGRTKKAAEQEAAE 252
Query: 148 AAWSAL 153
AW AL
Sbjct: 253 IAWRAL 258
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEI 43
+K LQEL P+Y EGPDHA F A+V G +
Sbjct: 193 WKTSLQELGAAQGLGAPTYQVDDEGPDHAKTFTAAVLLAGIV 234
>gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948]
gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948]
Length = 243
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 ESAYKQLKQI 242
>gi|418559245|ref|ZP_13123791.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|418993852|ref|ZP_13541488.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
gi|371975536|gb|EHO92830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|377745902|gb|EHT69877.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
Length = 243
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y ++ GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAA 232
Query: 147 IAAWSALKRM 156
+A+ LK++
Sbjct: 233 ESAYKQLKQI 242
>gi|359420982|ref|ZP_09212913.1| ribonuclease III [Gordonia araii NBRC 100433]
gi|358243255|dbj|GAB10982.1| ribonuclease III [Gordonia araii NBRC 100433]
Length = 243
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + L P Y +GP H FT T + G ++KK+AE+ AA
Sbjct: 164 WKTSLQELSAARSLGPPAYLISSTGPDHDKEFTATAVVGGEELGTGIGRSKKEAEQVAAQ 223
Query: 148 AAWSAL 153
AW AL
Sbjct: 224 EAWRAL 229
>gi|426241595|ref|XP_004014675.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 1 [Ovis aries]
Length = 496
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKSFVTRVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPTV 177
>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
gi|1706533|sp|P55266.1|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA
gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
Length = 1175
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 60/153 (39%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F S S + + A+ AAE A+ L S S
Sbjct: 587 KEGPAHDPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALQEEAANSADDQSGGA 645
Query: 78 TARVLDETGI------------YKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
LDE+ Y N L E A G +SGP H P F
Sbjct: 646 NTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 705
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 706 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738
>gi|410908811|ref|XP_003967884.1| PREDICTED: double-stranded RNA-specific editase B2-like [Takifugu
rubripes]
Length = 726
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q R GL + + ++GP H PIF+ VE+ G+ F G TKK+A+ AA A
Sbjct: 101 LVQLNELRPGLQYRMVS--QTGPVHAPIFSIAVEVNGLTFEG-TGPTKKKAKMRAAELAL 157
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 158 KSFIQFPN 165
>gi|359424778|ref|ZP_09215889.1| ribonuclease III [Gordonia amarae NBRC 15530]
gi|358239922|dbj|GAB05471.1| ribonuclease III [Gordonia amarae NBRC 15530]
Length = 274
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + L P Y +GP H FT T + G ++KK+AE+ AA
Sbjct: 170 WKTSLQELSSERELGPPQYQITSTGPDHDKEFTATAIVGGEEMGTGVGRSKKEAEQKAAA 229
Query: 148 AAWSAL 153
AW L
Sbjct: 230 LAWEEL 235
>gi|194665306|ref|XP_581374.4| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|297472608|ref|XP_002686059.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|296489763|tpg|DAA31876.1| TPA: RNA adenosine deaminase-like [Bos taurus]
Length = 1149
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 58/157 (36%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT----- 78
REGP H P+F+ V F + S + + A+ AAE A+ L S + +
Sbjct: 586 REGPAHDPKFQYCVAMGTHTFPTAS-APSKKAAKQMAAEEAMKALQGEATSSTSSEDQPG 644
Query: 79 -----------------ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
R + E Y N L E A G +SGP H
Sbjct: 645 STNTEAFDNLESVMPNKVRRISELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 704
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 705 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 741
>gi|220917396|ref|YP_002492700.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955250|gb|ACL65634.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
Length = 383
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIF 44
+K QLQEL+Q P Y + E GPDH+ F+ + GE+
Sbjct: 182 FKTQLQELSQSRLRATPRYRVVAEHGPDHSKTFEVETDLRGEVL 225
>gi|449435206|ref|XP_004135386.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1181
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P+Y T + F TVE G+ G+P KK AEK+AA
Sbjct: 1085 KSQLQTLLTRAGYAAPIYKTKQLKNNQ---FRATVEFNGLQIMGQPCTNKKNAEKDAAAE 1141
Query: 149 AWSAL 153
A L
Sbjct: 1142 ALEWL 1146
>gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1152
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTA---- 79
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDXSGGA 648
Query: 80 --------------RVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 649 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 708
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ ++AA AA L
Sbjct: 709 YQAKVGGRWFPAVCAHSKKQGXQDAADAALRVL 741
>gi|7798626|gb|AAF69767.1| double stranded RNA adenosine deaminase RED2 [Takifugu rubripes]
Length = 725
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q R GL + + ++GP H PIF+ VE+ G+ F G TKK+A+ AA A
Sbjct: 104 LVQLNELRPGLQYRMVS--QTGPVHAPIFSIAVEVNGLTFEG-TGPTKKKAKMRAAELAL 160
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 161 KSFIQFPN 168
>gi|212291457|gb|ACJ23858.1| double-stranded RNA-dependent protein kinase [Oplegnathus
fasciatus]
Length = 704
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 54 RQAEHAAAEVALNVLSTRGPSRSLTARVLDETGI---YKNLLQETAHRAGLNLPVYTTVR 110
R + E+ NVL +R L+ D + Y L+ + + R
Sbjct: 183 RSSGQQKEELNQNVLDICNETRRLSVNSKDNSFTETNYIGLVNHYCQKTNGSHKFIEERR 242
Query: 111 SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDS 161
GP H P F + + ++ K+ K+A+KNAA AWSAL+ + DS
Sbjct: 243 CGPPHNPRFFYKLVINDKDYPVGEGKSAKEAKKNAAQLAWSALQEQSDWDS 293
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 23/169 (13%)
Query: 2 YKNQLQELAQR--SCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHA 59
Y +L E AQR S C+ GPDH F V NG+ + R+A+H
Sbjct: 6 YIARLNEFAQRTRSALKYNDLGCV--GPDHIKTFTQRVVLNGKAY-PDGVGKNKREAKHN 62
Query: 60 AAEVALNVL----------STRG-----PSRSLTARVLDETGIYKNLLQETAHRAGLNLP 104
AA+ AL L ST P+ RV + Y L E + + +
Sbjct: 63 AAKNALKCLLENEHEDSIDSTENSAEAPPTPDCQTRVSNIN--YICWLNEYGQKNRVTIR 120
Query: 105 VYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ R GP + + C+ + G + +TK++A++ AA + +
Sbjct: 121 AVESTRPGPNNATL-CCSFVVGGREYPTVTGETKREAKEEAAKLVYDVI 168
>gi|433456418|ref|ZP_20414464.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
gi|432196294|gb|ELK52760.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
Length = 224
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K +QE A + Y SGP H F T+ + G+ + +KK+AE+ AA
Sbjct: 151 WKTSIQELAAARKMGSVEYAVQGSGPDHARTFVATLHIGGVAYGQGTGHSKKEAEQEAAA 210
Query: 148 AAWSALKRMPNLDS 161
+W L+ D+
Sbjct: 211 VSWRQLRAAETADA 224
>gi|426363823|ref|XP_004049032.1| PREDICTED: double-stranded RNA-specific editase B2 [Gorilla gorilla
gorilla]
Length = 739
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 130 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 185
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 186 LRSFVQFPN 194
>gi|82659087|ref|NP_059347.2| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Homo sapiens]
gi|90185286|sp|O95793.2|STAU1_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
gi|29792190|gb|AAH50432.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
gi|119596077|gb|EAW75671.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
[Homo sapiens]
gi|119596079|gb|EAW75673.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
[Homo sapiens]
gi|168277710|dbj|BAG10833.1| double-stranded RNA-binding protein Staufen homolog 1 [synthetic
construct]
gi|190690419|gb|ACE86984.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
[synthetic construct]
gi|190691797|gb|ACE87673.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
[synthetic construct]
Length = 577
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|365839119|ref|ZP_09380367.1| ribonuclease III [Anaeroglobus geminatus F0357]
gi|364565515|gb|EHM43236.1| ribonuclease III [Anaeroglobus geminatus F0357]
Length = 238
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 2 YKNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QEL QR Y C EGPDH F V NGEI + S T +HAA
Sbjct: 167 YKTYFQELLQRDGAQDIRYRLCREEGPDHNKTFFMEVTVNGEIMGTGSGKTKKSAEQHAA 226
Query: 61 AEV--ALNVLS 69
+ +N LS
Sbjct: 227 YKALEKMNALS 237
>gi|296200670|ref|XP_002747678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Callithrix jacchus]
Length = 577
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|158256406|dbj|BAF84176.1| unnamed protein product [Homo sapiens]
Length = 577
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419]
gi|189043356|sp|A6U7A8.1|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419]
Length = 238
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 89 KNLLQETAH-RAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE AH R G+ T RSGP H P FT TVE+ G++ ++K+ AE+ AA+
Sbjct: 163 KTELQEWAHARFGVAPKYRTEDRSGPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAM 222
>gi|388490178|ref|NP_001253237.1| double-stranded RNA-binding protein Staufen homolog 1 [Macaca
mulatta]
gi|383409091|gb|AFH27759.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
gi|384949036|gb|AFI38123.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
gi|387540218|gb|AFJ70736.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
Length = 577
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|114682565|ref|XP_514710.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 8 [Pan troglodytes]
gi|397475817|ref|XP_003809316.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Pan paniscus]
gi|410226896|gb|JAA10667.1| staufen, RNA binding protein, homolog 1 [Pan troglodytes]
gi|410267116|gb|JAA21524.1| staufen, RNA binding protein, homolog 1 [Pan troglodytes]
gi|410299212|gb|JAA28206.1| staufen, RNA binding protein, homolog 1 [Pan troglodytes]
Length = 577
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|402879494|ref|XP_003903372.1| PREDICTED: double-stranded RNA-specific editase B2 [Papio anubis]
Length = 724
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 115 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 170
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 171 LRSFVQFPN 179
>gi|4335949|gb|AAD17531.1| staufen protein [Homo sapiens]
Length = 577
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|332207755|ref|XP_003252961.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 3 [Nomascus leucogenys]
Length = 577
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|380788007|gb|AFE65879.1| double-stranded RNA-binding protein Staufen homolog 1 isoform b
[Macaca mulatta]
Length = 496
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPAV 177
>gi|4335947|gb|AAD17530.1| staufen protein [Homo sapiens]
gi|4335951|gb|AAD17532.1| staufen protein [Homo sapiens]
gi|4335953|gb|AAD17533.1| staufen protein [Homo sapiens]
Length = 496
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPAV 177
>gi|332207751|ref|XP_003252959.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 1 [Nomascus leucogenys]
gi|332207757|ref|XP_003252962.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
isoform 4 [Nomascus leucogenys]
Length = 496
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPAV 177
>gi|376261061|ref|YP_005147781.1| ribonuclease III [Clostridium sp. BNL1100]
gi|373945055|gb|AEY65976.1| ribonuclease III [Clostridium sp. BNL1100]
Length = 236
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQEL Q++ SY+ + GPDH F V NG + + ++AE A
Sbjct: 167 YKTQLQELVQQNGEQQISYSVTDQFGPDHNKTFITEVKINGAT-QGQGKGHSKKEAEQNA 225
Query: 61 AEVALNVLSTR 71
A+ ALN L T+
Sbjct: 226 AKDALNNLKTK 236
>gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 130 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 185
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 186 LRSFVQFPN 194
>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
norvegicus]
Length = 1175
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 60/153 (39%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F S S + + A+ AAE A+ L S S
Sbjct: 587 KEGPAHDPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALQEEAANSADDQSGGA 645
Query: 78 TARVLDETGI------------YKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
LDE+ Y N L E A G +SGP H P F
Sbjct: 646 NTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 705
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 706 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738
>gi|209364604|ref|NP_001126609.1| double-stranded RNA-binding protein Staufen homolog 1 [Pongo
abelii]
gi|55732106|emb|CAH92759.1| hypothetical protein [Pongo abelii]
Length = 495
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 115 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 172
Query: 159 LDSL 162
L ++
Sbjct: 173 LPAV 176
>gi|398348068|ref|ZP_10532771.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 222
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K LQE QR LP+Y I+E GPDHA F SV +E+ + AE A
Sbjct: 152 FKTLLQETCQRKFKLLPTYRLIQESGPDHAKTFLVSVRIRDR-YEAEGTGRNKKFAEQDA 210
Query: 61 AEVALNVLSTR 71
A L VL +
Sbjct: 211 ARKMLKVLGIK 221
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
Query: 15 FNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 74
L Y + +G K + +FES L Q A ++ LN L +
Sbjct: 86 LKLSDYVLLGKGEGQGSSQK---KLSANLFESLIGAIYLDQGLEIAEKIILNHLIAFAEN 142
Query: 75 RSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGE 133
V D +K LLQET R LP Y ++ SGP H F +V +
Sbjct: 143 PEKMESVKD----FKTLLQETCQRKFKLLPTYRLIQESGPDHAKTFLVSVRIRDRYEAEG 198
Query: 134 PAKTKKQAEKNAA 146
+ KK AE++AA
Sbjct: 199 TGRNKKFAEQDAA 211
>gi|355562257|gb|EHH18851.1| Double-stranded RNA-specific editase B2 [Macaca mulatta]
Length = 614
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 130 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 185
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 186 LRSFVQFPN 194
>gi|119596076|gb|EAW75670.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_b
[Homo sapiens]
Length = 317
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPAV 177
>gi|62088702|dbj|BAD92798.1| staufen isoform b variant [Homo sapiens]
Length = 591
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 211 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 268
Query: 159 LDSL 162
L ++
Sbjct: 269 LPAV 272
>gi|444731362|gb|ELW71717.1| Double-stranded RNA-binding protein Staufen like protein 1 [Tupaia
chinensis]
Length = 632
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 96 AHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALK 154
A + L LPV SGP H+ F V + F GE K+KK ++KNAAIA LK
Sbjct: 116 AMQCALQLPV--ARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELK 171
Query: 155 RMPNLDSLTN-----KETDKPE-------EQDQAI--VARVLSNFRAKDDNRNNNARRRD 200
++P L ++ K+ KP E QA+ ++R+ +AK D +
Sbjct: 172 KLPPLPAVERVKPRIKKKTKPTVKLQASPEYGQAMNPISRLAQIQQAKKDKEPEYVLLTE 231
Query: 201 QSQARRR 207
+ RRR
Sbjct: 232 RGLPRRR 238
>gi|441521639|ref|ZP_21003298.1| ribonuclease III [Gordonia sihwensis NBRC 108236]
gi|441458862|dbj|GAC61259.1| ribonuclease III [Gordonia sihwensis NBRC 108236]
Length = 234
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + L P Y +GP H FT + G +TKK+AE+NAA
Sbjct: 164 WKTSLQELSAERSLGQPQYQVTSTGPDHNKEFTAIAVVGGTQLGTGTGRTKKEAEQNAAE 223
Query: 148 AAWSALKRMP 157
AW AL+ P
Sbjct: 224 LAWKALEEQP 233
>gi|82659083|ref|NP_004593.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
[Homo sapiens]
gi|82659085|ref|NP_059346.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
[Homo sapiens]
gi|82659089|ref|NP_059348.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
[Homo sapiens]
gi|13276703|emb|CAB66536.1| hypothetical protein [Homo sapiens]
gi|63102431|gb|AAH95397.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
gi|119596075|gb|EAW75669.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
[Homo sapiens]
gi|119596078|gb|EAW75672.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
[Homo sapiens]
gi|119596080|gb|EAW75674.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
[Homo sapiens]
gi|158259179|dbj|BAF85548.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPAV 177
>gi|384261139|ref|YP_005416325.1| RNAse III [Rhodospirillum photometricum DSM 122]
gi|378402239|emb|CCG07355.1| RNAse III [Rhodospirillum photometricum DSM 122]
Length = 252
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTT-VRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A GL LP Y R GP H P+FT V + G +K+ AE+ AA
Sbjct: 182 KTALQEWAQGRGLPLPAYDEESREGPAHKPVFTVRVSVQGHGAEAASGPSKRIAEQAAA 240
>gi|426392079|ref|XP_004062387.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Gorilla gorilla gorilla]
Length = 581
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|328543513|ref|YP_004303622.1| ribonuclease III [Polymorphum gilvum SL003B-26A1]
gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1]
Length = 234
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A GL P Y T R GP H P+F V ++G +K+ AE+NAA
Sbjct: 164 KTTLQEWAQSKGLPAPGYQVTTREGPDHAPVFVVAVTVSGYAPGEGRGGSKRIAEQNAAE 223
Query: 148 A 148
A
Sbjct: 224 A 224
>gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens]
gi|33112436|sp|Q9NS39.1|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens]
gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 130 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 185
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 186 LRSFVQFPN 194
>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
gi|189043301|sp|A7H5Y2.1|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
Length = 225
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ ++ +G+ + + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALNVLST 70
A++AL L +
Sbjct: 214 AKIALEKLGS 223
>gi|2500552|sp|Q52698.1|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus]
Length = 228
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 3 KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNF-NGEIFESPSYCTTLRQAEHAA 60
K LQE AQ P Y T R+GPDHAP+F+ +V +GE E+ + + R AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLASGETEEAQA--GSKRNAEQAA 216
Query: 61 AEVALNVL 68
A+ L L
Sbjct: 217 AKALLERL 224
>gi|403251460|ref|ZP_10917800.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
gi|402915220|gb|EJX36203.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
Length = 212
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 KNQLQELAQRSCFNLPS--YTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
K LQELA + NLPS Y GPDH F A+ E FE+ + R+AE +A
Sbjct: 141 KTALQELA--ASLNLPSPEYEISESGPDHDKSFIATALVGSERFETGQ-GKSKREAEQSA 197
Query: 61 AEVALNVLSTR 71
A++A LS+R
Sbjct: 198 AKLAHEHLSSR 208
>gi|338730556|ref|YP_004659948.1| RNAse III [Thermotoga thermarum DSM 5069]
gi|335364907|gb|AEH50852.1| RNAse III [Thermotoga thermarum DSM 5069]
Length = 241
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K LQEL Q LP Y ++ EGP H +F V ++ + T++++AE A
Sbjct: 169 HKTALQELTQAKYKALPRYVLVKEEGPSHMRKFTVEVRLKRKVL-AVGEGTSIKEAEKVA 227
Query: 61 AEVALNVL 68
A++AL L
Sbjct: 228 AKLALEKL 235
>gi|197122613|ref|YP_002134564.1| ribonuclease III [Anaeromyxobacter sp. K]
gi|196172462|gb|ACG73435.1| Ribonuclease III [Anaeromyxobacter sp. K]
Length = 383
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIF 44
+K QLQEL+Q P Y + E GPDH+ F+ + GE+
Sbjct: 182 FKTQLQELSQSRLRATPRYRVVAEHGPDHSKTFEVETDLRGEVL 225
>gi|426218981|ref|XP_004003711.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Ovis
aries]
Length = 1155
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 58/157 (36%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT----- 78
REGP H P+F+ V F + S + + A+ AAE A+ L S + +
Sbjct: 592 REGPAHDPKFQYCVAMGTHTFPTAS-APSKKAAKQMAAEEAMKALQGEATSSASSDDQPG 650
Query: 79 -----------------ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
R + E Y N L E A G +SGP H
Sbjct: 651 STNTEAFDTLESVMPNKVRRISELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 710
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 711 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 747
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 32/174 (18%)
Query: 8 ELAQRSC-FNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALN 66
+ A ++C FN+ + GP H PRFK V +G F P+ + + A+ AA A+
Sbjct: 468 QFASQTCEFNMIE----QSGPPHEPRFKFQVVISGREF-PPAEAGSKKVAKQDAATKAMM 522
Query: 67 VL-------------------STRGPSRSLTARVLDETGIY----KN---LLQETAHRAG 100
+L S R P ++ ++ + KN L E H+ G
Sbjct: 523 ILLEEAKAQDSGSPEEACRYSSEREPEKTAESQTATPSATSFLSGKNPVTTLLECVHKLG 582
Query: 101 LNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
+ R GP H P F V + F A +KK A++ AA A AL+
Sbjct: 583 SSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKALQ 636
>gi|238478799|ref|NP_001154411.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|332194213|gb|AEE32334.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1206
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG PVY T + F V G++F G+P +KK AEK+AA
Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRSMVTFNGLDFMGKPCGSKKNAEKDAA 1156
>gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36]
gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36]
Length = 228
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 89 KNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A GL P Y T R GP H P+FT T + A +K+QAE+ AA
Sbjct: 159 KTALQEWAQARGLPPPAYVQTDRQGPDHAPVFTITARIENGASAVASAPSKRQAEQAAAK 218
Query: 148 AAWSALKR 155
+ L+R
Sbjct: 219 TLLAQLER 226
>gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM]
gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM]
Length = 227
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A GL P Y V RSGP H P FT L A +K+QAE+ AA
Sbjct: 159 KTALQEWAQARGLAPPRYEEVARSGPDHAPEFTIVARLETGEEAASKAGSKRQAEQAAAK 218
Query: 148 AAWS 151
A S
Sbjct: 219 ALLS 222
>gi|409385301|ref|ZP_11237962.1| Ribonuclease III [Lactococcus raffinolactis 4877]
gi|399207246|emb|CCK18877.1| Ribonuclease III [Lactococcus raffinolactis 4877]
Length = 239
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 83 DETGIYKNLLQETAHRAGL-----NLPV-YTTV-RSGPGHVPIFTCTVELAGMNFTGEPA 135
D+ YK+ LQE + AG +P+ Y V +SGP H P+F V G
Sbjct: 155 DKVTDYKSALQEIFYTAGQIDKNNKIPLEYVVVGKSGPVHAPVFEVDVVFEGRTIGHGKG 214
Query: 136 KTKKQAEKNAAIAAW 150
K+KK AE++AA +A+
Sbjct: 215 KSKKIAEQDAARSAF 229
>gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1]
gi|81562548|sp|Q6N6C1.1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1]
Length = 272
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL PVY V R+GP H P F V L G+ +K+ AEK AA
Sbjct: 198 KTVLQEWAQARGLPTPVYREVERTGPHHDPQFRVAVILPGLEPAEGLGGSKRAAEKVAAS 257
Query: 148 A 148
A
Sbjct: 258 A 258
>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
Length = 231
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K+ LQE A GL Y + GP H F V + + + +TKK+AE+ AA
Sbjct: 163 FKSKLQERAQHKGLGAVEYRIMEERGPAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAA 222
Query: 147 IAAWSAL 153
AW +L
Sbjct: 223 AVAWQSL 229
>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
Length = 236
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQEL Q++ +Y+ + GPDH F V NG I + + ++AE A
Sbjct: 167 YKTQLQELVQQNGEQQITYSVTDQFGPDHNKTFITEVKINGAI-QGRGKGHSKKEAEQNA 225
Query: 61 AEVALNVLST 70
A+ ALN L T
Sbjct: 226 AKNALNNLKT 235
>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
Length = 930
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 342 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 400
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 401 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 460
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 461 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493
>gi|30694379|ref|NP_175298.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|332194212|gb|AEE32333.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1197
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG PVY T + F V G++F G+P +KK AEK+AA
Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRSMVTFNGLDFMGKPCGSKKNAEKDAA 1156
>gi|346991596|ref|ZP_08859668.1| ribonuclease III [Ruegeria sp. TW15]
Length = 225
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A G P Y V R+GP H PIFT L A +K+QAE+ AA
Sbjct: 159 KTSLQEWAQARGQKPPAYVEVKRTGPDHAPIFTIAARLQDGTEAQATAGSKRQAEQAAAK 218
Query: 148 A 148
A
Sbjct: 219 A 219
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE AQ P+Y + R GPDHAP F + + E+ + + RQAE AAA
Sbjct: 159 KTSLQEWAQARGQKPPAYVEVKRTGPDHAPIFTIAARLQ-DGTEAQATAGSKRQAEQAAA 217
Query: 62 EVALNVLS 69
+ L LS
Sbjct: 218 KALLEQLS 225
>gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial
[Pongo abelii]
Length = 345
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 67 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 122
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 123 LRSFVQFPN 131
>gi|12597813|gb|AAG60124.1|AC073555_8 hypothetical protein [Arabidopsis thaliana]
Length = 1167
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
KN LQ RAG PVY T + F V G++F G+P +KK AEK+AA
Sbjct: 1072 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRSMVTFNGLDFMGKPCGSKKNAEKDAA 1126
>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
musculus]
Length = 930
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL------ 77
+EGP H P+F+ V + F P + + A+ AAE A+ L S +
Sbjct: 342 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 400
Query: 78 ------------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
R + E Y N L E A G +SGP H P F
Sbjct: 401 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 460
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 461 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493
>gi|410925527|ref|XP_003976232.1| PREDICTED: double-stranded RNA-specific editase B2-like [Takifugu
rubripes]
Length = 828
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 98 RAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157
R GL + T R GP H P+F+ VE+ G++F G T KQA+ AA A + + P
Sbjct: 255 RPGLRYDI--TARHGPLHAPLFSVGVEVNGVHFEGR-GPTVKQAKLRAAEGALRSFIQFP 311
Query: 158 N 158
N
Sbjct: 312 N 312
>gi|374582910|ref|ZP_09656004.1| ribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374418992|gb|EHQ91427.1| ribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 261
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNA 145
G YK +LQE A R + + GP H FT V +AG +TKK+AE++A
Sbjct: 188 GDYKTVLQEKAQREEKEVSYQILLEEGPDHNKCFTAGVFVAGDLMGKGTGRTKKEAEQHA 247
Query: 146 A 146
A
Sbjct: 248 A 248
>gi|351703077|gb|EHB05996.1| Double-stranded RNA-binding protein Staufen-like protein 1
[Heterocephalus glaber]
Length = 573
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 197 NLPVNFEVARESGPPHMKNFVTRVSVG--EFIGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Query: 159 LDSL 162
L ++
Sbjct: 255 LPAV 258
>gi|350595031|ref|XP_003360089.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Sus scrofa]
Length = 677
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 297 NLPVNFEVARESGPPHMKSFVTRVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 354
Query: 159 L 159
L
Sbjct: 355 L 355
>gi|4572588|emb|CAB40082.1| staufen protein [Homo sapiens]
Length = 496
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 116 NLPVNFEVARESGPPHMKNFVTKVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Query: 159 LDSL 162
L ++
Sbjct: 174 LPAV 177
>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
Length = 204
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE Q++ + SY ++E GPDH F A V + G+I S + ++AE A
Sbjct: 123 YKTELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSK-KEAEQQA 181
Query: 61 AEVALNVLS 69
A+ A N L
Sbjct: 182 AKDAFNRLD 190
>gi|296480970|tpg|DAA23085.1| TPA: staufen, RNA binding protein, homolog 1 [Bos taurus]
Length = 601
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 223 NLPVNFEVARESGPPHMKSFVTRVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 280
Query: 159 LDSL 162
L ++
Sbjct: 281 LPTV 284
>gi|86158075|ref|YP_464860.1| ribonuclease III [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774586|gb|ABC81423.1| RNAse III [Anaeromyxobacter dehalogenans 2CP-C]
Length = 385
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIF 44
+K QLQEL+Q P Y + E GPDH+ F+ + GE+
Sbjct: 182 FKTQLQELSQSRLRATPRYRVVAEHGPDHSKTFEVETDLRGEVM 225
>gi|375099397|ref|ZP_09745660.1| ribonuclease III [Saccharomonospora cyanea NA-134]
gi|374660129|gb|EHR60007.1| ribonuclease III [Saccharomonospora cyanea NA-134]
Length = 250
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 59 AAAEVALNVLSTRGPSRSLTARVLDET-----GI-YKNLLQETAHRAGLNLPVYTTVRSG 112
A +A + + R L R+LDE G+ +K LQE AGL +P Y +G
Sbjct: 135 GAVYLAHGIETARSLVHRLFGRLLDEAPRRGAGLDWKTSLQELTASAGLGVPEYKVADTG 194
Query: 113 PGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P H F+ V +AG + TKK+AE+ AA AAW AL
Sbjct: 195 PDHRKEFSAVVLVAGRDLGHGDGTTKKEAEQKAAEAAWRAL 235
>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
Length = 970
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis]
Length = 678
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F +VE+ G F G TKK+A+ NAA A
Sbjct: 71 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMSVEVNGQLFEGS-GPTKKKAKLNAAEKAL 127
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 128 RSFVQFPN 135
>gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Anolis carolinensis]
Length = 439
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 92 LQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWS 151
L E R L L GP H IFT V++ + + KTKK+A+ +AA+ AW
Sbjct: 15 LHEYCQRNRLQLEYLELDIRGPPHDRIFTVAVQIDKIQYRQCEGKTKKEAKAHAAVLAWE 74
Query: 152 ALK 154
+++
Sbjct: 75 SIE 77
>gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
Length = 694
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F +VE+ G F G TKK+A+ NAA A
Sbjct: 73 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMSVEVNGQLFEGS-GPTKKKAKLNAAEKAL 129
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 130 RSFVQFPN 137
>gi|395845296|ref|XP_003795377.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Otolemur garnettii]
Length = 1171
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F + S + + A+ AAE A+ L S P +
Sbjct: 585 KEGPAHDPKFQYCVAVGAQTFPTVS-APSKKVAKQMAAEEAIKALHGEATSSDDQPGDTN 643
Query: 78 T-------------ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIF 119
T R ++E Y N L E A G +SGP H P F
Sbjct: 644 TESCENLESVVPGKVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKF 703
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ ++ AA AA L
Sbjct: 704 VYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737
>gi|395729746|ref|XP_002810146.2| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
5 [Pongo abelii]
Length = 1226
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 36/178 (20%)
Query: 5 QLQELAQRSC-FNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEV 63
+ + A ++C FN+ + GP H PRFK V NG F P+ + + A+ AA
Sbjct: 510 EYAQFASQTCEFNMIE----QSGPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMK 564
Query: 64 ALNVL----------------------------STRGPSRSLTARVLDETGIYKNLLQET 95
A+ +L ++ P+ S T+ ++ + L E
Sbjct: 565 AMTILLEEAKAKDSGKSEESPHYSTEKESEKTAESQIPTPSATSLFSGKSPV--TTLLEC 622
Query: 96 AHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
H+ G + + GP H P F V + F A +KK A++ AA A AL
Sbjct: 623 MHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680
>gi|148228849|ref|NP_001080784.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
gi|28302215|gb|AAH46732.1| Stau2-a protein [Xenopus laevis]
Length = 685
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 18 PSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRS 76
P Y + E GP H+ F + + +++ S T++++++HAAA +AL + P+
Sbjct: 106 PQYKLLDERGPAHSKLFTVQLTLGEQTWQAES--TSIKKSQHAAASLALCETTLPKPAAR 163
Query: 77 LTARVLD--------------------ETGIYKNLLQETA--HRAGLNLPVYTTVRSGPG 114
T ++ E IY++L + HRA N R
Sbjct: 164 HTKNHMNNNPDSITPTVELNGLAMRRGEPAIYRSLDPKPLPNHRANYNYRGMYHQRYLCP 223
Query: 115 HVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR--MPNLDSLTNKETDKPEE 172
+ F + + F GE KT++ A NAA+ A AL+ +P SL + PEE
Sbjct: 224 MLKTFYVQLTVGNSEFYGE-GKTRQAARHNAALKALHALRNEPIPERSSLNGEANRGPEE 282
Query: 173 QDQA 176
A
Sbjct: 283 DKDA 286
>gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes]
Length = 692
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q + GL + + ++GP H P+F +VE+ G F G TKK+A+ NAA A
Sbjct: 71 LMQLNEIKPGLQYKLLS--QTGPVHAPVFVMSVEVNGQLFEGS-GPTKKKAKLNAAEKAL 127
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 128 RSFVQFPN 135
>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
Length = 249
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE G +P+Y V +SGP H P+F V + G +KK AE+ AA
Sbjct: 167 KTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQGHGSILGTGSSKKLAEQEAAK 226
Query: 148 AAWSALKRMPNL 159
LKR+ L
Sbjct: 227 L---MLKRITEL 235
>gi|313104303|sp|P55265.4|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=136 kDa double-stranded
RNA-binding protein; Short=p136; AltName:
Full=Interferon-inducible protein 4; Short=IFI-4;
AltName: Full=K88DSRBP
Length = 1226
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
sapiens]
Length = 1244
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 655 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 713
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 714 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 773
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 774 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 810
>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
Length = 1226
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|395845300|ref|XP_003795379.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Otolemur garnettii]
Length = 1145
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F + S + + A+ AAE A+ L S P +
Sbjct: 585 KEGPAHDPKFQYCVAVGAQTFPTVS-APSKKVAKQMAAEEAIKALHGEATSSDDQPGDTN 643
Query: 78 T-------------ARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIF 119
T R ++E Y N L E A G +SGP H P F
Sbjct: 644 TESCENLESVVPGKVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKF 703
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ ++ AA AA L
Sbjct: 704 VYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737
>gi|336320286|ref|YP_004600254.1| ribonuclease III [[Cellvibrio] gilvus ATCC 13127]
gi|336103867|gb|AEI11686.1| ribonuclease III [[Cellvibrio] gilvus ATCC 13127]
Length = 246
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEI 43
+K LQELA PSY GPDHA F A GE+
Sbjct: 159 WKTSLQELAAALGLGAPSYEVTGTGPDHARTFTAHAVVGGEV 200
>gi|449533658|ref|XP_004173789.1| PREDICTED: LOW QUALITY PROTEIN: dosage compensation regulator-like,
partial [Cucumis sativus]
Length = 266
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P+Y T + F TVE G+ G+P KK AEK+AA
Sbjct: 179 KSQLQTLLTRAGYAAPIYKTKQLKNNQ---FRATVEFNGLQIMGQPCTNKKNAEKDAAAE 235
Query: 149 AWSAL 153
A L
Sbjct: 236 ALEWL 240
>gi|426331791|ref|XP_004026877.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Gorilla gorilla gorilla]
Length = 1226
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEASNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
sapiens]
gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
Length = 1200
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
Length = 1226
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
gi|81666107|sp|Q7VIA9.1|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
Length = 240
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQE+ Q +P+YT I E GPDH F+ +++ G+ + S + ++A+ +
Sbjct: 161 YKTALQEITQAFYGEIPTYTLISESGPDHKKSFEIALSVQGKEYARAS-GNSKKEAQQKS 219
Query: 61 AEVALNVLSTR 71
A++A L ++
Sbjct: 220 AQIAYKKLYSK 230
>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 1221
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 632 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 690
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 691 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 750
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 751 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 787
>gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter arcticus 238]
gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter arcticus 238]
Length = 197
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G P Y T RSGP H PIFT V L A +K+QAE+ AA
Sbjct: 127 KTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSKRQAEQAAA 185
>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
sapiens]
gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
Length = 1226
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|255570705|ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 1172
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P Y T + F TVE GM G+P KK AEK+AA
Sbjct: 1085 KSQLQTLITRAGYAAPTYKTKQLKNSQ---FRSTVEFNGMQIMGQPCNNKKSAEKDAAAE 1141
Query: 149 AWSAL 153
A L
Sbjct: 1142 ALRWL 1146
>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
Length = 1257
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 668 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 726
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 727 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 786
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 787 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823
>gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
Length = 229
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K LQE Q LPSY + EGPDHA F+ NG+ ++ R AE AA
Sbjct: 160 KTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAA 219
Query: 62 EVALNVLS 69
VA+ L
Sbjct: 220 SVAIGELG 227
>gi|428775122|ref|YP_007166909.1| RNAse III [Halothece sp. PCC 7418]
gi|428689401|gb|AFZ42695.1| RNAse III [Halothece sp. PCC 7418]
Length = 228
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE A C +P Y+ +E G DHA F V E++ + + AE A
Sbjct: 155 YKGQLQEWALAYCGLIPRYSIRQETGADHAKEFTVEVRIGSEVY-GVGVGESKKTAEKRA 213
Query: 61 AEVALNVLSTRG 72
A+ AL + G
Sbjct: 214 AKAALEAQNAAG 225
>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
Length = 1200
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
gi|122425284|sp|Q1RHA2.1|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043340|sp|A8GYE2.1|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
Length = 227
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A ++P+Y + R G H+ FT +V++ G TG + K+AEKNAA
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTG-KGHSIKEAEKNAAR 218
Query: 148 AAWSALKRM 156
LK +
Sbjct: 219 ELLHKLKLL 227
>gi|426331793|ref|XP_004026878.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Gorilla gorilla gorilla]
Length = 1200
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEASNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|291391824|ref|XP_002712359.1| PREDICTED: protein kinase, interferon-inducible double stranded RNA
dependent activator [Oryctolagus cuniculus]
Length = 314
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R P F V G+I T+ + A+H AAE A+N+L
Sbjct: 49 NIPVYECERSDVQIRVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 106
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 107 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 161
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 162 TICRLESFMETGKGA-SKKQAKRNAA 186
>gi|410222682|gb|JAA08560.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410263176|gb|JAA19554.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410334879|gb|JAA36386.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|395827514|ref|XP_003786946.1| PREDICTED: double-stranded RNA-specific editase B2 [Otolemur
garnettii]
Length = 1031
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 106 YTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 438 YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELALRSFVQFPN 490
>gi|333923291|ref|YP_004496871.1| ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748852|gb|AEF93959.1| Ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 246
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE Q++ + SY ++E GPDH F A V + G+I S + ++AE A
Sbjct: 165 YKTELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSK-KEAEQQA 223
Query: 61 AEVALNVL 68
A+ A N L
Sbjct: 224 AKDAFNRL 231
>gi|410299060|gb|JAA28130.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 696 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2]
gi|254807894|sp|B8EK13.1|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2]
Length = 235
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 89 KNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
K LQE A GL P Y T R+GP H P FT +VE+AG K+ AE+
Sbjct: 158 KTTLQEWAQARGLPPPSYRETARTGPDHAPEFTISVEIAGFQQAEARGFAKRLAEQ 213
>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
Length = 1278
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 668 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 726
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 727 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 786
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 787 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823
>gi|397492942|ref|XP_003817378.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase [Pan paniscus]
Length = 1194
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 631 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 689
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 690 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 749
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 750 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 786
>gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017]
gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017]
Length = 250
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNG 41
+K LQEL + +P Y + GPDH F A V NG
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFSAVVLVNG 209
>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Nomascus leucogenys]
Length = 1279
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 690 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 748
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 749 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 808
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 809 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845
>gi|225424116|ref|XP_002280133.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis
vinifera]
Length = 1195
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P Y T + F TVE GM G+P KK AEK+AA
Sbjct: 1108 KSQLQTLLTRAGYAAPTYKTKQLKNNQ---FRSTVEFNGMQIMGQPCNNKKFAEKDAAAE 1164
Query: 149 AWSAL 153
A L
Sbjct: 1165 ALQLL 1169
>gi|395236821|ref|ZP_10414971.1| ribonuclease III [Turicella otitidis ATCC 51513]
gi|423350253|ref|ZP_17327906.1| ribonuclease III [Turicella otitidis ATCC 51513]
gi|394488004|emb|CCI83059.1| ribonuclease III [Turicella otitidis ATCC 51513]
gi|404387776|gb|EJZ82878.1| ribonuclease III [Turicella otitidis ATCC 51513]
Length = 245
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K +LQE A G +LP Y T +GP H FT V L KK AE+ AA
Sbjct: 176 WKTVLQEHAAAHGKDLPAYDTTATGPAHDQTFTAVVRLGEEELGRGEGHNKKLAEQAAAR 235
Query: 148 AAWSAL 153
A AL
Sbjct: 236 EACRAL 241
>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
Length = 851
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 6 LQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVA 64
L EL ++ + P YT + GP H+ F+ SV NG+ + C + ++A+ AA++
Sbjct: 782 LNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKLC 841
Query: 65 LNVLSTRGPS 74
L L PS
Sbjct: 842 LRALGILPPS 851
>gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1]
Length = 240
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE AQ P Y + E GPDH F+ V+ E++ + + ++AE AA
Sbjct: 167 YKTKLQEDAQTRLKVPPRYRVVAEAGPDHEKTFEVEVSIGSELY-ARATGRNKKEAEQAA 225
Query: 61 AEVALNVL 68
A L++L
Sbjct: 226 ARATLDML 233
>gi|424782431|ref|ZP_18209278.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
gi|421959751|gb|EKU11359.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
Length = 222
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQEL Q +P Y + +GPDH F+ ++ N EI S + + ++AE
Sbjct: 152 YKTALQELTQARFAEIPKYVLVGSKGPDHKKEFEIALMLNEREI--SRAAGKSKKEAEQK 209
Query: 60 AAEVALNVLS 69
AA+ AL +L
Sbjct: 210 AAKTALEILG 219
>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Nomascus leucogenys]
Length = 1253
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 690 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 748
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 749 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 808
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 809 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845
>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
Length = 222
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQEL Q +P Y + +GPDH F+ ++ N EI S + + ++AE
Sbjct: 152 YKTALQELTQARFAEIPKYVLVGSKGPDHKKEFEIALMLNEREI--SRAAGKSKKEAEQK 209
Query: 60 AAEVALNVLS 69
AA+ AL +L
Sbjct: 210 AAKTALEILG 219
>gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043]
gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043]
Length = 265
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP-AKTKKQAEKNAA 146
+K LQ+ A G P Y GP H F V L G GE ++KK+AE+ AA
Sbjct: 178 WKTSLQQVAAAVGQGAPEYRVAEQGPDHEKEFHARVVL-GEEVLGEGHGRSKKEAEQKAA 236
Query: 147 IAAWSALK 154
AW +L+
Sbjct: 237 QEAWQSLE 244
>gi|432927309|ref|XP_004080962.1| PREDICTED: double-stranded RNA-specific editase B2-like [Oryzias
latipes]
Length = 731
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q R GL + + ++GP H P+F+ VE+ G+ F G TKK+A+ AA A
Sbjct: 101 LVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEG-TGPTKKKAKMRAAELAL 157
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 158 KSFIQFPN 165
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 76 SLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEP 134
+ + V+D +K+ LQE +A YT ++ +GP H F V L G
Sbjct: 169 GMFSHVMD----FKSQLQEMVQQANSGALQYTIIKENGPAHNRTFVSQVMLNGKELGVGN 224
Query: 135 AKTKKQAEKNAAIAAWSALKR 155
K+KK+AE+ AA +A ALK+
Sbjct: 225 GKSKKEAEQKAAQSAMVALKK 245
>gi|291299631|ref|YP_003510909.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
gi|290568851|gb|ADD41816.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
Length = 243
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE AGL +P Y +GP H FT + G F +KK+AE+ AA
Sbjct: 169 WKTSLQELTSGAGLGVPDYRISETGPDHAKRFTAWAVVGGEEFGEGTGGSKKEAEQIAAE 228
Query: 148 AAWSALKRMPNLD 160
AW + N D
Sbjct: 229 RAWREISERQNGD 241
>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
Length = 222
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQEL Q +P Y + +GPDH F+ ++ N EI S + + ++AE
Sbjct: 152 YKTALQELTQARFAQIPKYVLVGSKGPDHKKEFEIALMLNEREI--SRAAGKSKKEAEQK 209
Query: 60 AAEVALNVLS 69
AA+ AL +L
Sbjct: 210 AAKTALEILG 219
>gi|284029143|ref|YP_003379074.1| hypothetical protein Kfla_1171 [Kribbella flavida DSM 17836]
gi|283808436|gb|ADB30275.1| hypothetical protein Kfla_1171 [Kribbella flavida DSM 17836]
Length = 441
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 397 RSVIPVCAAPPSPPITTPSSSSSSSNPPSTKEA-AEVSA-----ASGSKLLNNPSSTQQL 450
R+ P A PPSPP+T PS+++ SS PP K AE+ A AS + Q L
Sbjct: 34 RAEEPATAGPPSPPVTRPSAAAGSSGPPGDKRMLAEIDAVLKTRASAVRTGQLAQFLQHL 93
Query: 451 NPE 453
+P+
Sbjct: 94 DPQ 96
>gi|195616600|gb|ACG30130.1| hypothetical protein [Zea mays]
Length = 83
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Query: 378 KSMYTGGFNPQRIAPAVQIRSVIPVCAAPPSP 409
++ GGF+ APAV +RSVIPVCAAPP P
Sbjct: 35 RTFAAGGFH----APAVSVRSVIPVCAAPPPP 62
>gi|295690019|ref|YP_003593712.1| ribonuclease III [Caulobacter segnis ATCC 21756]
gi|295431922|gb|ADG11094.1| ribonuclease III [Caulobacter segnis ATCC 21756]
Length = 231
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN 129
K LQE A G LP Y + R+GP H P+FT V +AG++
Sbjct: 163 KTALQEWAQGKGRPLPTYRVLDRTGPDHAPVFTVEVVVAGVD 204
>gi|428211293|ref|YP_007084437.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
gi|427999674|gb|AFY80517.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
Length = 386
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 75 RSLTARVLDETGIY---KNLLQETAHR-AGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN 129
R+LTA E+GI KN QE + G P Y T+ +SGP H P FT V++
Sbjct: 304 RNLTA----ESGILLDAKNRFQEWVQKNLGPTQPKYETIAQSGPDHSPDFTVEVKVGNEV 359
Query: 130 FTGEPAKTKKQAEKNAA 146
+ ++KK+AEK AA
Sbjct: 360 YGVGKGRSKKEAEKRAA 376
>gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139]
gi|386069698|ref|YP_005984594.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139]
gi|353454065|gb|AER04584.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
Length = 246
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K +LQE G + P Y V SGP H + + G + KK+AE+ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAAR 232
Query: 148 AAWSAL 153
A SAL
Sbjct: 233 RAVSAL 238
>gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 243
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK++LQE+ Q LP Y I+E GPDH +F+ +V E+ + + ++A+ A
Sbjct: 156 YKSRLQEILQSIYKELPEYKVIKESGPDHNKKFEVAVYIKSELLGKGA-GNSKKEAQQFA 214
Query: 61 AEVAL 65
A+ A+
Sbjct: 215 AKQAM 219
>gi|385232651|ref|YP_005793993.1| ribonuclease III [Ketogulonicigenium vulgare WSH-001]
gi|343461562|gb|AEM39997.1| Ribonuclease III [Ketogulonicigenium vulgare WSH-001]
Length = 221
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 79 ARVLDETGIYKNLLQETAHRAGLNLPVYTT-VRSGPGHVPIFTCTVEL-AGMNFTGEPAK 136
A V D+ K LQE A G P Y RSGP H PIFT V L +G TGE A
Sbjct: 142 ANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDHAPIFTVRVTLQSGPTATGE-AG 200
Query: 137 TKKQAEKNAA 146
+K+ AE AA
Sbjct: 201 SKRLAEHAAA 210
>gi|297737748|emb|CBI26949.3| unnamed protein product [Vitis vinifera]
Length = 1181
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P Y T + F TVE GM G+P KK AEK+AA
Sbjct: 1094 KSQLQTLLTRAGYAAPTYKTKQLKNNQ---FRSTVEFNGMQIMGQPCNNKKFAEKDAAAE 1150
Query: 149 AWSAL 153
A L
Sbjct: 1151 ALQLL 1155
>gi|164508746|emb|CAM07148.1| double stranded RNA activated protein kinase 2 [Tetraodon
nigroviridis]
Length = 424
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
Y +LL E A + G +L GP H+ F + G F K K+ A+ AA
Sbjct: 4 YISLLNEQAQKQGWSLRYEDVGCDGPDHIKRFRVRAIVNGRAFPEGAGKNKRDAKHKAAE 63
Query: 148 AAWSAL 153
AW+AL
Sbjct: 64 NAWTAL 69
>gi|424846628|ref|ZP_18271222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|356485926|gb|EHI15913.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
Length = 224
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ ++ NG+ + + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLNGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALNVLS 69
A++ L L
Sbjct: 214 AKITLEKLG 222
>gi|348564126|ref|XP_003467856.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
Staufen homolog 1-like [Cavia porcellus]
Length = 715
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 237 NLPVNFEVARESGPPHMKNFVTRVSVG--EFVGEGEGKSKKISKKNAAIAVLEELKKLPP 294
Query: 159 LDSL 162
L ++
Sbjct: 295 LPAV 298
>gi|380804545|gb|AFE74148.1| double-stranded RNA-specific editase B2, partial [Macaca mulatta]
Length = 205
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F VE+ G+ F G TKK+A+ AA A
Sbjct: 129 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELA 184
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 185 LRSFVQFPN 193
>gi|335296679|ref|XP_003130894.2| PREDICTED: double-stranded RNA-specific editase B2-like [Sus
scrofa]
Length = 1000
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 91 LLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
L+Q R GL Y TV ++GP H P+F V++ G+ F G TKK+A+ AA A
Sbjct: 396 LVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVDVNGLTFEGT-GPTKKKAKMRAAELA 451
Query: 150 WSALKRMPN 158
+ + PN
Sbjct: 452 LRSFVQFPN 460
>gi|348525504|ref|XP_003450262.1| PREDICTED: double-stranded RNA-specific editase B2 [Oreochromis
niloticus]
Length = 728
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q R GL + + ++GP H P+F+ VE+ G+ F G TKK+A+ AA A
Sbjct: 95 LVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEG-TGPTKKKAKMRAAELAL 151
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 152 KSFIQFPN 159
>gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4]
gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4]
Length = 256
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN-FTGEPAKTKKQAEKNAA 146
K+ LQE A L +PVY V RSGP H P+F + G+ GE A +K+ AE+ AA
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGA-SKRVAEQEAA 236
Query: 147 IA 148
A
Sbjct: 237 RA 238
>gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1]
gi|418058990|ref|ZP_12696951.1| ribonuclease III [Methylobacterium extorquens DSM 13060]
gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1]
gi|373567497|gb|EHP93465.1| ribonuclease III [Methylobacterium extorquens DSM 13060]
Length = 256
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN-FTGEPAKTKKQAEKNAA 146
K+ LQE A L +PVY V RSGP H P+F + G+ GE A +K+ AE+ AA
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGA-SKRVAEQEAA 236
Query: 147 IA 148
A
Sbjct: 237 RA 238
>gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium extorquens CM4]
gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium extorquens CM4]
Length = 256
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN-FTGEPAKTKKQAEKNAA 146
K+ LQE A L +PVY V RSGP H P+F + G+ GE A +K+ AE+ AA
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGA-SKRVAEQEAA 236
Query: 147 IA 148
A
Sbjct: 237 RA 238
>gi|419585204|ref|ZP_14121265.1| ribonuclease III [Campylobacter coli 202/04]
gi|380562621|gb|EIA85477.1| ribonuclease III [Campylobacter coli 202/04]
Length = 224
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ ++ NG+ + + + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALNVLS 69
A++ L L
Sbjct: 214 AKITLEKLG 222
>gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1]
gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1]
Length = 256
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN-FTGEPAKTKKQAEKNAA 146
K+ LQE A L +PVY V RSGP H P+F + G+ GE A +K+ AE+ AA
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIEPGYGEGA-SKRVAEQEAA 236
Query: 147 IA 148
A
Sbjct: 237 RA 238
>gi|317419725|emb|CBN81761.1| Double-stranded RNA-specific editase B2 [Dicentrarchus labrax]
Length = 726
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q R GL + + ++GP H P+F+ VE+ G+ F G TKK+A+ AA A
Sbjct: 101 LVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEG-TGPTKKKAKMRAAELAL 157
Query: 151 SALKRMPN 158
+ + PN
Sbjct: 158 KSFIQFPN 165
>gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307]
gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307]
Length = 229
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 89 KNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVEL-AGMNFTGEPAKTKKQAEKNAA 146
K LQE A G P Y T RSGP H PIFT V L +G G+ A +K+QAE+ AA
Sbjct: 159 KTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLQSGPTDIGQ-APSKRQAEQAAA 217
>gi|451982016|ref|ZP_21930351.1| Ribonuclease III [Nitrospina gracilis 3/211]
gi|451760760|emb|CCQ91627.1| Ribonuclease III [Nitrospina gracilis 3/211]
Length = 241
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K++LQ +Q + +P Y ++E GPDH +F+ V NGE + + ++AE AA
Sbjct: 166 FKSELQHFSQNTLNCIPFYKVVKETGPDHEKQFEVVVRTNGEE-QGRGAGRSKKEAEQAA 224
Query: 61 AEVALNVLS 69
A AL L+
Sbjct: 225 ARSALEHLN 233
>gi|422390078|ref|ZP_16470174.1| ribonuclease III [Propionibacterium acnes HL103PA1]
gi|422463027|ref|ZP_16539646.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|422467304|ref|ZP_16543858.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|422469381|ref|ZP_16545906.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|422565430|ref|ZP_16641079.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|422575316|ref|ZP_16650857.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1]
Length = 265
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K +LQE G + P Y V SGP H + + G + KK+AE+ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAAR 251
Query: 148 AAWSAL 153
A SAL
Sbjct: 252 RAVSAL 257
>gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium]
Length = 156
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K +LQE A GL P Y V +SGP H PIFT V + KK AE+ AA
Sbjct: 86 KTILQEWAQSKGLLAPSYHIVNKSGPDHNPIFTVEVRMHSYETLQATGNNKKIAEQKAA 144
>gi|344280068|ref|XP_003411807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
[Loxodonta africana]
Length = 535
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V SGP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 155 NLPVNFEVARESGPPHMKSFVTKVSVG--EFIGEGEGKSKKISKKNAAIAILEELKKLPP 212
Query: 159 LDSL 162
L ++
Sbjct: 213 LPTV 216
>gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
Length = 228
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A GL P Y T RSGP H P+FT T L A +K+ AE+ AA
Sbjct: 159 KTALQEWAQARGLMPPRYVQTDRSGPDHAPVFTITARLDNGAEAAATAPSKRAAEQAAA 217
>gi|310815100|ref|YP_003963064.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
gi|308753835|gb|ADO41764.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
Length = 228
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 79 ARVLDETGIYKNLLQETAHRAGLNLPVYTT-VRSGPGHVPIFTCTVEL-AGMNFTGEPAK 136
A V D+ K LQE A G P Y RSGP H PIFT V L +G TGE A
Sbjct: 149 ANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDHAPIFTVRVTLQSGPTATGE-AG 207
Query: 137 TKKQAEKNAA 146
+K+ AE AA
Sbjct: 208 SKRLAEHAAA 217
>gi|403667654|ref|ZP_10932954.1| ribonuclease 3 [Kurthia sp. JC8E]
Length = 248
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQEL Q++ Y ++E GP H F + V N ++ S + + ++AE A
Sbjct: 177 FKSQLQELVQQTSSGSLQYAIVKENGPAHKRTFVSQVILN-DVVISEGHGKSKKEAEQKA 235
Query: 61 AEVALNVLSTR 71
A++A++ L+ +
Sbjct: 236 AQIAIHTLTNK 246
>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
Length = 223
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK LQEL Q +P Y + E GPDH +FK SV + + + + T+ + A+
Sbjct: 152 YKTALQELTQAHFHEIPKYELLEEIGPDHCKKFKVSVYIQNQEY-AKAIGTSKKSAQQNC 210
Query: 61 AEVA 64
A++A
Sbjct: 211 AKIA 214
>gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484]
gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484]
Length = 258
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE + GL P Y V GP H FT +AG KK AE++AA
Sbjct: 159 WKTSLQELSAALGLGAPSYDVVGEGPDHARTFTARAVIAGEPRGAGSGPAKKLAEQHAAE 218
Query: 148 AAWSALKRM 156
A+ AL+ +
Sbjct: 219 DAYRALEAI 227
>gi|148225849|ref|NP_001086918.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
gi|83318414|gb|AAI08851.1| Stau2-b protein [Xenopus laevis]
Length = 689
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 18 PSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRS 76
P Y + E GP H+ F + + +++ S T++++A+HAAA +AL+ + P+
Sbjct: 107 PQYKLLDERGPAHSKLFTVQLTLGEQTWQAES--TSIKKAQHAAASLALSETTLPKPAAR 164
Query: 77 LTARVLD--------------------ETGIYKNLLQETA--HRAGLNLPVYTTVRSGPG 114
T ++ E IY+++ + HRA N R
Sbjct: 165 HTKNHMNNNPGSITPTVELNGLAMRRGEPAIYRSMDPKPLPNHRANYNYRGMYHQRYLCP 224
Query: 115 HVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR--MPNLDSLTNKETDKPEE 172
+ F + + F GE KT++ A +AA+ A AL+ +P SL + PEE
Sbjct: 225 MLKTFYVQLTVGNNEFYGE-GKTRQAARHSAALKALHALRNEPIPERSSLNGEANRGPEE 283
Query: 173 QDQA 176
A
Sbjct: 284 DKDA 287
>gi|224111576|ref|XP_002315906.1| predicted protein [Populus trichocarpa]
gi|222864946|gb|EEF02077.1| predicted protein [Populus trichocarpa]
Length = 1053
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P Y T + F TVE GM G+P KK AEK+AA
Sbjct: 966 KSQLQTLLTRAGYAAPSYKTKQLKNNQ---FRATVEFNGMQIMGQPCNNKKSAEKDAAAE 1022
Query: 149 AWSAL 153
A L
Sbjct: 1023 ALQWL 1027
>gi|431894476|gb|ELK04276.1| Double-stranded RNA-binding protein Staufen like protein 1
[Pteropus alecto]
Length = 750
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159
NLPV V SGP H+ F V + GE K+KK ++KNAAIA LK++P L
Sbjct: 291 NLPVNFEVARESGPPHMKSFLTKVSVGEFVGEGE-GKSKKISKKNAAIAVLEELKKLPPL 349
>gi|348575574|ref|XP_003473563.1| PREDICTED: double-stranded RNA-specific editase B2 [Cavia
porcellus]
Length = 784
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN-------LDSL 162
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN + S
Sbjct: 186 QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAELALKSFVQFPNACQAHLAMGSS 244
Query: 163 TNKETDKPEEQ 173
TN TD +Q
Sbjct: 245 TNLCTDFTSDQ 255
>gi|374849967|dbj|BAL52968.1| ribonuclease III [uncultured candidate division OP1 bacterium]
gi|374856382|dbj|BAL59236.1| ribonuclease III [uncultured candidate division OP1 bacterium]
Length = 230
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE A + PVYT V S G H FT VE+ G + G+ ++KK AE+ AA
Sbjct: 160 YKTLLQEWAQQQHQK-PVYTLVASEGQDHCKEFTVRVEVNGFSALGK-GRSKKAAEQEAA 217
Query: 147 IAAWSAL 153
++ L
Sbjct: 218 RQLYTQL 224
>gi|296481330|tpg|DAA23445.1| TPA: adenosine deaminase, RNA-specific, B2 [Bos taurus]
Length = 785
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 73 PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTG 132
P R L R+ L+Q R GL + + ++GP H PIF V++ G+ F G
Sbjct: 112 PLRLLWRRLSWSVAPKNALVQLHELRPGLQFRMVS--QTGPVHAPIFAVAVDVNGLTFEG 169
Query: 133 EPAKTKKQAEKNAAIAAWSALKRMPN 158
TKK+A+ AA A + ++PN
Sbjct: 170 T-GPTKKKAKMRAAELALRSFVQLPN 194
>gi|356533151|ref|XP_003535131.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1093
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P Y+T + F TVE G+ G+P KK AEK+AA
Sbjct: 1006 KSQLQTLLTRAGYGAPFYSTKQLKNNQ---FQATVEFNGVQIMGQPYINKKNAEKDAAAE 1062
Query: 149 AWSAL 153
A L
Sbjct: 1063 ALQWL 1067
>gi|376297527|ref|YP_005168757.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
Length = 227
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 44 FESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNL 103
FE+ L AA L++ + P+R++ L ET YK+ LQE A +
Sbjct: 118 FEALLGAVFLDGGFEAARRTILDIFEDQWPARAM----LPETKDYKSRLQEVAQDVFRDR 173
Query: 104 PVYT-TVRSGPGHVPIFTCTVEL-AGMNFTGEPAKTKKQAEKNAA 146
PVY + SGP H +F V L G F G + K+AE+ AA
Sbjct: 174 PVYVLSGTSGPEHEKLFEVDVTLPNGERFRG-LGTSVKRAEQEAA 217
>gi|432906952|ref|XP_004077608.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced, double-stranded
RNA-activated protein kinase [Oryzias latipes]
Length = 900
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
Y L+E A R + + GP H+ FT + G + KK+A+KNAA
Sbjct: 6 YVGKLKEYADRERVTVSYEDVASDGPDHIRRFTIRAVVNGEGYPEGVGNNKKEAKKNAAR 65
Query: 148 AAWSAL 153
AW AL
Sbjct: 66 NAWMAL 71
>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
Length = 931
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 401 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 460
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 461 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f]
gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f]
Length = 281
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL P Y +GP H FT +AG +KK+AE+ AA
Sbjct: 168 WKTSLQEQTALLGLGPPDYVVTEAGPDHAKRFTAFARVAGEVLGEGEGGSKKEAEQRAAA 227
Query: 148 AAWSALKR 155
A++ L++
Sbjct: 228 TAFAMLEK 235
>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
Length = 235
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQEL Q+ Y I+E GPDH F A V + G++ + T +HAA
Sbjct: 162 YKTRLQELLQKRSPEPLRYVIIKEEGPDHNKLFTAGVVYRGKVLGRGTGRTKKEAEQHAA 221
Query: 61 AE 62
E
Sbjct: 222 RE 223
>gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase
[Danio rerio]
gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio]
gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
Y + L E Q++ + +GP H RF NG+ F + T ++A+ AA
Sbjct: 8 YTSLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGT-GKTKKEAKQNAA 66
Query: 62 EVALNVLS-------TRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPG 114
+ AL L T P +++ + Y L E + ++ L + + PG
Sbjct: 67 KNALEGLKSTHSDEPTPSPVENISVSKIASHPNYTCWLNEHSQKSRLMFKACESTKMDPG 126
Query: 115 HVP---IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
++ + C F K KK+A++ AA+ + L + PN + L
Sbjct: 127 NLTRLCTYVCKYVCDDKEFPEGYGKNKKEAKEAAALRVYEELNKTPNTEVL 177
>gi|389691083|ref|ZP_10179976.1| ribonuclease III [Microvirga sp. WSM3557]
gi|388589326|gb|EIM29615.1| ribonuclease III [Microvirga sp. WSM3557]
Length = 236
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 3 KNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
K+ LQE AQ P+Y+ + GPDHAP+F+ V G E S T+ R AE AAA
Sbjct: 160 KSALQEWAQGQGLPPPTYSVAEQTGPDHAPKFRVLVKVKGAEGEFGS-GTSKRVAEQAAA 218
>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 931
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 401 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 460
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 461 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
troglodytes]
Length = 931
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 401 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 460
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 461 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|222148081|ref|YP_002549038.1| ribonuclease III [Agrobacterium vitis S4]
gi|259491897|sp|B9JUN7.1|RNC_AGRVS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|221735069|gb|ACM36032.1| ribonuclease III [Agrobacterium vitis S4]
Length = 239
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE AH PVY RSGP H P FT TVE+ + ++K+ AE+ AA
Sbjct: 164 KTELQEWAHAKFAVTPVYRVADRSGPDHDPSFTVTVEIGKLEPETGIDRSKRAAEQAAA 222
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A L +PVY V R+GP H P F V++ G+ +K+ AE+ AA
Sbjct: 180 KSALQEWAMGRSLPIPVYAVVERTGPDHAPRFRIAVQVEGLEPGHGEGTSKRVAEQEAAR 239
Query: 148 A 148
A
Sbjct: 240 A 240
>gi|294891381|ref|XP_002773551.1| hypothetical protein Pmar_PMAR029530 [Perkinsus marinus ATCC 50983]
gi|239878723|gb|EER05367.1| hypothetical protein Pmar_PMAR029530 [Perkinsus marinus ATCC 50983]
Length = 536
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 106 YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNA---AIAAWSALKRMPNLDSL 162
Y + G G F CTV + G++F +P KKQA+++A A+ +W L R D+L
Sbjct: 382 YDMLEGGAG----FICTVNVFGIDFRSDPCPKKKQADQDACRSALESWDTLIR----DTL 433
Query: 163 TNKETDKPEEQDQAIVARVLSNFRAKDDNRNNNARRR 199
+ +P+ + ++ S +R +R N+A +R
Sbjct: 434 ALRVAVEPQSEPES------SRYRMDAKSRLNHALQR 464
>gi|224078725|ref|XP_002188609.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like [Taeniopygia guttata]
Length = 697
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 102 NLPV--------YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
NLPV T SGP H+ F V + GE K+KK ++KNAAIA L
Sbjct: 287 NLPVNFEFFPLKQVTKESGPPHMKSFVTKVSVGEFMGEGE-GKSKKISKKNAAIAVLEEL 345
Query: 154 KRMPNLDSL 162
K++P L ++
Sbjct: 346 KKLPPLPTV 354
>gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus]
Length = 734
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 91 LLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
L+Q R GL + + ++GP H PIF V++ G+ F G TKK+A+ AA A
Sbjct: 130 LVQLHELRPGLQFRMVS--QTGPVHAPIFAVAVDVNGLTFEGT-GPTKKKAKMRAAELAL 186
Query: 151 SALKRMPN 158
+ ++PN
Sbjct: 187 RSFVQLPN 194
>gi|358051770|ref|ZP_09145878.1| ribonuclease III [Staphylococcus simiae CCM 7213]
gi|357258741|gb|EHJ08690.1| ribonuclease III [Staphylococcus simiae CCM 7213]
Length = 243
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H+ Y + GP H +FT V L G KTKK++E+ AA
Sbjct: 173 FKTQFQELVHQQNKGDVTYKLINEEGPAHHRLFTSEVILEGHAVASGKGKTKKESEQKAA 232
Query: 147 IAAWSALKRM 156
A+ LK +
Sbjct: 233 EQAYKQLKNL 242
>gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
Length = 1211
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 30 APRFKASVNFNGEIF-ESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT----ARVLDE 84
AP A++ G I ++P+ +A+H T GPS + A V +
Sbjct: 756 APTVAAALGIKGTISSQAPAKSLPDTEAKHT---------ETDGPSSQVEVGREATVSKD 806
Query: 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKN 144
+ YK++LQ+ L P Y V+ + T + + G T EPAK+KK+AE+N
Sbjct: 807 SVPYKDILQKHVQDQKLPSPRYKDVKGEEN--TLSTVSFKTRGAYQTKEPAKSKKEAEQN 864
Query: 145 AAIAAWSALK 154
AA A LK
Sbjct: 865 AAKAVLEMLK 874
>gi|147827068|emb|CAN66462.1| hypothetical protein VITISV_035844 [Vitis vinifera]
Length = 1180
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K+ LQ RAG P Y T + F TVE GM G+P KK AEK+AA
Sbjct: 1093 KSQLQTLLTRAGYAAPTYKTKQLKNNQ---FRSTVEFNGMQIMGQPCNNKKFAEKDAAAE 1149
Query: 149 AWSAL 153
A L
Sbjct: 1150 ALQLL 1154
>gi|50417953|gb|AAH77753.1| Stau2-B-prov protein [Xenopus laevis]
Length = 644
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 18 PSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRS 76
P Y + E GP H+ F + + +++ S T++++A+HAAA +AL+ + P+
Sbjct: 62 PQYKLLDERGPAHSKLFTVQLTLGEQTWQAES--TSIKKAQHAAASLALSETTLPKPAAR 119
Query: 77 LTARVLD--------------------ETGIYKNLLQETA--HRAGLNLPVYTTVRSGPG 114
T ++ E IY+++ + HRA N R
Sbjct: 120 HTKNHMNNNPGSITPTVELNGLAMRRGEPAIYRSMDPKPLPNHRANYNYRGMYHQRYLCP 179
Query: 115 HVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR--MPNLDSLTNKETDKPEE 172
+ F + + F GE KT++ A +AA+ A AL+ +P SL + PEE
Sbjct: 180 MLKTFYVQLTVGNNEFYGE-GKTRQAARHSAALKALHALRNEPIPERSSLNGEANRGPEE 238
Query: 173 QDQA 176
A
Sbjct: 239 DKDA 242
>gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus
norvegicus]
Length = 634
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 60/153 (39%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL------STRGPSRSL 77
+EGP H P+F+ V + F S S + + A+ AAE A+ L S S
Sbjct: 72 KEGPAHDPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALQEEAANSADDQSGGA 130
Query: 78 TARVLDETGI------------YKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
LDE+ Y N L E A G +SGP H P F
Sbjct: 131 NTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 190
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 191 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|409400301|ref|ZP_11250411.1| ribonuclease III [Acidocella sp. MX-AZ02]
gi|409130686|gb|EKN00433.1| ribonuclease III [Acidocella sp. MX-AZ02]
Length = 223
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A + G LP+Y T+ +SGP H P+F V + G+ A K+ AE+ AA
Sbjct: 157 KTALQEWALKRGQILPLYETLEQSGPSHAPLFVVRVSV-GVESATAQAGAKRAAEQEAA 214
>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
Length = 256
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
YK LQE A L P+Y GP H F TV + G A +KK A+ AA
Sbjct: 174 YKTTLQEYCAEASLGEPIYEAEGFGPDHARYFIATVTVGGELVGHGQASSKKGAKSEAAR 233
Query: 148 AAW 150
A +
Sbjct: 234 AGY 236
>gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus]
Length = 705
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR-------- 75
+EGP H P+F+ V + F P + + A+ AAE A+ L S
Sbjct: 143 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 201
Query: 76 ---SL-------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
SL R + E Y N L E A G +SGP H P F
Sbjct: 202 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 261
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 262 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 294
>gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814]
gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814]
Length = 255
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A G P Y + R+GP H P+FT V + G+ PAK + +++ A
Sbjct: 186 KSALQEWAQGDGRPAPNYENIDRTGPDHAPVFTVEVRVEGV----RPAKGEGSSKQEAQR 241
Query: 148 AAWSAL 153
AA SA+
Sbjct: 242 AAASAM 247
>gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
Length = 233
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +QE Q S P Y + E GPDH+ F A + N E++ S + ++AE A
Sbjct: 163 YKTLMQEYTQASLATTPEYRIVAEQGPDHSKVFVAQLLLNREVYGEGS-GRSKKEAEQEA 221
Query: 61 AEVALNVL 68
A VA L
Sbjct: 222 ARVAYQQL 229
>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
Length = 225
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ ++ NG+ + + ++A+ A
Sbjct: 156 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGNKKEAQQMA 214
Query: 61 AEVALNVLS 69
A++ L L
Sbjct: 215 AKITLEKLG 223
>gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO]
gi|189043371|sp|A8F397.1|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO]
Length = 238
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIF---ESPSYCTTLRQAE 57
YK LQE+ Q LP Y + E GP H +F + +G++ E PS +++AE
Sbjct: 169 YKTSLQEITQARYRKLPEYVLVNEKGPSHMKKFTVELRLSGKLIAVGEGPS----IKEAE 224
Query: 58 HAAAEVALNVL 68
AA A+ L
Sbjct: 225 KEAARRAIEKL 235
>gi|419550405|ref|ZP_14088911.1| ribonuclease III [Campylobacter coli 2688]
gi|419553745|ref|ZP_14091902.1| ribonuclease III [Campylobacter coli 2698]
gi|380530677|gb|EIA55739.1| ribonuclease III [Campylobacter coli 2688]
gi|380533733|gb|EIA58640.1| ribonuclease III [Campylobacter coli 2698]
Length = 224
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ ++ NG+ + + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGNKKEAQQMA 213
Query: 61 AEVALNVLS 69
A++ L L
Sbjct: 214 AKITLEKLG 222
>gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens]
Length = 905
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP---------- 73
+EGP H P+F+ V + F S S + + A+ AAE A+ L
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVS-APSKKVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 74 ---SRSL---------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHV 116
S SL R + E Y N L E A G +SGP H
Sbjct: 401 GMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 460
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 461 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|419537870|ref|ZP_14077235.1| ribonuclease III [Campylobacter coli 90-3]
gi|419540283|ref|ZP_14079521.1| ribonuclease III [Campylobacter coli Z163]
gi|419544520|ref|ZP_14083476.1| ribonuclease III [Campylobacter coli 2553]
gi|419546878|ref|ZP_14085623.1| ribonuclease III [Campylobacter coli 2680]
gi|419549476|ref|ZP_14088066.1| ribonuclease III [Campylobacter coli 2685]
gi|419553184|ref|ZP_14091447.1| ribonuclease III [Campylobacter coli 2692]
gi|419555536|ref|ZP_14093549.1| ribonuclease III [Campylobacter coli 84-2]
gi|419557967|ref|ZP_14095857.1| ribonuclease III [Campylobacter coli 80352]
gi|419560500|ref|ZP_14098141.1| ribonuclease III [Campylobacter coli 86119]
gi|419562240|ref|ZP_14099759.1| ribonuclease III [Campylobacter coli 1091]
gi|419565239|ref|ZP_14102588.1| ribonuclease III [Campylobacter coli 1098]
gi|419566594|ref|ZP_14103848.1| ribonuclease III [Campylobacter coli 1148]
gi|419569978|ref|ZP_14107033.1| ribonuclease III [Campylobacter coli 7--1]
gi|419571931|ref|ZP_14108869.1| ribonuclease III [Campylobacter coli 132-6]
gi|419574263|ref|ZP_14111024.1| ribonuclease III [Campylobacter coli 1891]
gi|419575098|ref|ZP_14111795.1| ribonuclease III [Campylobacter coli 1909]
gi|419577226|ref|ZP_14113783.1| ribonuclease III [Campylobacter coli 59-2]
gi|419579706|ref|ZP_14116108.1| ribonuclease III [Campylobacter coli 1948]
gi|419581745|ref|ZP_14118035.1| ribonuclease III [Campylobacter coli 1957]
gi|419591030|ref|ZP_14126389.1| ribonuclease III [Campylobacter coli 37/05]
gi|419592712|ref|ZP_14127956.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|419595070|ref|ZP_14130184.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|419596512|ref|ZP_14131515.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|419599217|ref|ZP_14134083.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|419600989|ref|ZP_14135725.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|419602764|ref|ZP_14137338.1| ribonuclease III [Campylobacter coli 151-9]
gi|419604007|ref|ZP_14138482.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|419606995|ref|ZP_14141345.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|419608702|ref|ZP_14142887.1| ribonuclease III [Campylobacter coli H6]
gi|419611039|ref|ZP_14145088.1| ribonuclease III [Campylobacter coli H8]
gi|419612541|ref|ZP_14146417.1| ribonuclease III [Campylobacter coli H9]
gi|419614811|ref|ZP_14148580.1| ribonuclease III [Campylobacter coli H56]
gi|419617063|ref|ZP_14150694.1| ribonuclease III [Campylobacter coli Z156]
gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|380517237|gb|EIA43356.1| ribonuclease III [Campylobacter coli Z163]
gi|380519417|gb|EIA45495.1| ribonuclease III [Campylobacter coli 90-3]
gi|380521629|gb|EIA47349.1| ribonuclease III [Campylobacter coli 2680]
gi|380525099|gb|EIA50654.1| ribonuclease III [Campylobacter coli 2553]
gi|380525687|gb|EIA51192.1| ribonuclease III [Campylobacter coli 2685]
gi|380529448|gb|EIA54604.1| ribonuclease III [Campylobacter coli 2692]
gi|380535994|gb|EIA60660.1| ribonuclease III [Campylobacter coli 84-2]
gi|380536990|gb|EIA61575.1| ribonuclease III [Campylobacter coli 86119]
gi|380540084|gb|EIA64409.1| ribonuclease III [Campylobacter coli 1098]
gi|380540610|gb|EIA64910.1| ribonuclease III [Campylobacter coli 80352]
gi|380541447|gb|EIA65709.1| ribonuclease III [Campylobacter coli 1091]
gi|380545945|gb|EIA69908.1| ribonuclease III [Campylobacter coli 1148]
gi|380548527|gb|EIA72429.1| ribonuclease III [Campylobacter coli 7--1]
gi|380549901|gb|EIA73629.1| ribonuclease III [Campylobacter coli 1891]
gi|380552684|gb|EIA76239.1| ribonuclease III [Campylobacter coli 132-6]
gi|380554296|gb|EIA77773.1| ribonuclease III [Campylobacter coli 1909]
gi|380556681|gb|EIA79925.1| ribonuclease III [Campylobacter coli 1948]
gi|380557699|gb|EIA80902.1| ribonuclease III [Campylobacter coli 59-2]
gi|380558478|gb|EIA81656.1| ribonuclease III [Campylobacter coli 1957]
gi|380569220|gb|EIA91667.1| ribonuclease III [Campylobacter coli 37/05]
gi|380571779|gb|EIA94137.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|380574438|gb|EIA96541.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|380575832|gb|EIA97900.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|380575953|gb|EIA98015.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|380580494|gb|EIB02242.1| ribonuclease III [Campylobacter coli 151-9]
gi|380580987|gb|EIB02719.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|380582338|gb|EIB04002.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|380585061|gb|EIB06434.1| ribonuclease III [Campylobacter coli H6]
gi|380586154|gb|EIB07466.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|380588981|gb|EIB10066.1| ribonuclease III [Campylobacter coli H8]
gi|380590213|gb|EIB11238.1| ribonuclease III [Campylobacter coli H9]
gi|380592232|gb|EIB13144.1| ribonuclease III [Campylobacter coli H56]
gi|380594164|gb|EIB14970.1| ribonuclease III [Campylobacter coli Z156]
Length = 224
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ ++ NG+ + + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGNKKEAQQMA 213
Query: 61 AEVALNVLS 69
A++ L L
Sbjct: 214 AKITLEKLG 222
>gi|61098218|ref|NP_001012849.1| double-stranded RNA-binding protein Staufen homolog 1 [Gallus
gallus]
gi|53136660|emb|CAG32659.1| hypothetical protein RCJMB04_32c1 [Gallus gallus]
Length = 712
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 102 NLPV--------YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
NLPV T SGP H+ F V + GE K+KK ++KNAAIA L
Sbjct: 287 NLPVNFEFFPLKQVTKESGPPHMKSFVTKVSVGEFMGEGE-GKSKKISKKNAAIAVLEEL 345
Query: 154 KRMPNLDSL 162
K++P L ++
Sbjct: 346 KKLPPLPTV 354
>gi|326931867|ref|XP_003212045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 1 [Meleagris gallopavo]
Length = 712
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 102 NLPV--------YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
NLPV T SGP H+ F V + GE K+KK ++KNAAIA L
Sbjct: 287 NLPVNFEFFPLKQVTKESGPPHMKSFVTKVSVGEFMGEGE-GKSKKISKKNAAIAVLEEL 345
Query: 154 KRMPNLDSL 162
K++P L ++
Sbjct: 346 KKLPPLPTV 354
>gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84]
gi|398378516|ref|ZP_10536676.1| ribonuclease III [Rhizobium sp. AP16]
gi|254807233|sp|B9JC73.1|RNC_AGRRK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|221722838|gb|ACM25994.1| ribonuclease III [Agrobacterium radiobacter K84]
gi|397724707|gb|EJK85171.1| ribonuclease III [Rhizobium sp. AP16]
Length = 239
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE AH PVY RSGP H P FT TVE+AG ++K+ AE+ AA
Sbjct: 164 KTELQEWAHAKFGVTPVYRVDDRSGPDHDPRFTVTVEVAGAAPETGIERSKRAAEQVAA 222
>gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus]
Length = 700
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR-------- 75
+EGP H P+F+ V + F P + + A+ AAE A+ L S
Sbjct: 112 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 170
Query: 76 ---SL-------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
SL R + E Y N L E A G +SGP H P F
Sbjct: 171 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 230
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 231 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263
>gi|336437038|ref|ZP_08616747.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336006172|gb|EGN36208.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 236
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 89 KNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE G Y T GP H +F+ E+ G+++ ++KK AE+ AA
Sbjct: 167 KTILQEIVQAKGKEAVNYRLTGEDGPDHNKVFSVNAEIGGVSYGSGKGRSKKAAEQEAAY 226
Query: 148 AAWSALKR 155
A LK+
Sbjct: 227 RAILRLKK 234
>gi|345859715|ref|ZP_08812049.1| ribonuclease III [Desulfosporosinus sp. OT]
gi|344327172|gb|EGW38616.1| ribonuclease III [Desulfosporosinus sp. OT]
Length = 261
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEP-AKTKKQAEKN 144
G YK +LQE A R + GP H FT V L G N G+ +TKK+AE++
Sbjct: 188 GDYKTVLQEKAQREEKEVNYQILAEEGPDHNKCFTAGVFLQG-NLMGKGVGRTKKEAEQH 246
Query: 145 AA---IAAWS 151
AA + W
Sbjct: 247 AAQQVLEVWG 256
>gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus
(Silurana) tropicalis]
Length = 731
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F+ VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 133 QTGPVHAPVFSVAVEVNGLTFEG-TGPTKKKAKMRAAELALKSFVQFPN 180
>gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A]
gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A]
Length = 266
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFT 131
K +LQE A GL PVY V R+GP H P F VEL G+ +
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAVELPGLEVS 241
>gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|396078041|dbj|BAM31417.1| ribonuclease III [Helicobacter cinaedi ATCC BAA-847]
Length = 242
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG 41
YK LQEL Q +P+YT + E GPDH F+ +++ NG
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNG 201
>gi|386760965|ref|YP_006234600.1| ribonuclease III [Helicobacter cinaedi PAGU611]
gi|385145981|dbj|BAM11489.1| ribonuclease III [Helicobacter cinaedi PAGU611]
Length = 242
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG 41
YK LQEL Q +P+YT + E GPDH F+ +++ NG
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNG 201
>gi|432110219|gb|ELK33992.1| Double-stranded RNA-binding protein Staufen like protein 1 [Myotis
davidii]
Length = 731
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 102 NLPVYTTV--RSGPGHVPIFTCTVELAGMNFTGE-PAKTKKQAEKNAAIAAWSALKRMPN 158
NLPV V +GP H+ F V + F GE K+KK ++KNAAIA LK++P
Sbjct: 291 NLPVNFEVARETGPPHMKSFVTKVSVG--EFVGEGEGKSKKISKKNAAIAILEELKKLPP 348
Query: 159 L 159
L
Sbjct: 349 L 349
>gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14]
gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14]
Length = 266
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN 129
K +LQE A GL PVY V R+GP H P F VEL G+
Sbjct: 198 KTVLQEWAQGQGLPTPVYREVERTGPHHDPRFRVAVELPGLE 239
>gi|149639721|ref|XP_001515387.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ornithorhynchus
anatinus]
Length = 397
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 4 NQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
N LQELA R ++LP YT +E GP H F +N E + + +QA+ +AAE
Sbjct: 213 NSLQELAMRCGWSLPEYTLSKESGPAHKKEF--IMNCKLETYVETGTGASKKQAKESAAE 270
Query: 63 VALNVLS--TRGPSRSLTARVLDETGIYKNLLQETAHR 98
L L T G +SL + + G + ++ ++ +
Sbjct: 271 KLLAKLHTVTAGQKKSLVKPIGNNLGCTWDAMKNSSGK 308
>gi|428317703|ref|YP_007115585.1| Ribonuclease 3 [Oscillatoria nigro-viridis PCC 7112]
gi|428241383|gb|AFZ07169.1| Ribonuclease 3 [Oscillatoria nigro-viridis PCC 7112]
Length = 400
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 3 KNQLQELAQRSCFNL-PSYTCIRE-GPDHAPRFKASVNFNGEIF 44
KNQLQE ++ + P Y I+E GPDHA F V NG+++
Sbjct: 331 KNQLQECVHQNIGPITPQYITIQEAGPDHAKEFTVEVRINGQVY 374
>gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 660
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR-------- 75
+EGP H P+F+ V + F P + + A+ AAE A+ L S
Sbjct: 72 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 130
Query: 76 ---SL-------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
SL R + E Y N L E A G +SGP H P F
Sbjct: 131 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 190
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 191 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|452966440|gb|EME71451.1| dsRNA-specific ribonuclease [Magnetospirillum sp. SO-1]
Length = 229
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A GL LP+Y + + GP H PIF V + G+ +K+ AE+ AA
Sbjct: 162 KTALQEWAQGRGLQLPLYRVLGQEGPPHEPIFLMEVSVEGVGSAVGRGASKRVAEQAAA 220
>gi|336452822|ref|YP_004607288.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332849|emb|CCB79576.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 223
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 73 PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFT 131
P+ SL +D YK+ LQE +P YT SGP H F + + +
Sbjct: 142 PNLSLQELFMD----YKSALQELTQARFKVVPTYTLKNESGPDHAKQFEMQIFILNKLYG 197
Query: 132 GEPAKTKKQAEKNAAIAAWSALKRMP 157
A +KKQAE+ A A+ LK MP
Sbjct: 198 TCKASSKKQAEQLCAQVAYEQLKEMP 223
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q +P+YT E GPDHA +F+ + +++ + ++ +QAE
Sbjct: 153 YKSALQELTQARFKVVPTYTLKNESGPDHAKQFEMQIFILNKLYGTCK-ASSKKQAEQLC 211
Query: 61 AEVA 64
A+VA
Sbjct: 212 AQVA 215
>gi|354464998|ref|XP_003494967.1| PREDICTED: double-stranded RNA-specific editase B2 [Cricetulus
griseus]
Length = 739
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 141 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 188
>gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus]
Length = 745
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 194
>gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
Length = 245
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K +QE L +P Y SGP H F T++L G T +TKK+AE AA
Sbjct: 176 WKTTVQERLREHDLPMPEYEVTSSGPEHDKAFFATLKLDGKERTRGQGRTKKEAEHQAAR 235
Query: 148 A 148
A
Sbjct: 236 A 236
>gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255]
gi|90101631|sp|Q3SRB3.1|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255]
Length = 266
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN 129
K +LQE A GL PVY V R+GP H P F VEL G+
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAVELPGLE 239
>gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus]
Length = 674
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR-------- 75
+EGP H P+F+ V + F P + + A+ AAE A+ L S
Sbjct: 112 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 170
Query: 76 ---SL-------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
SL R + E Y N L E A G +SGP H P F
Sbjct: 171 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 230
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 231 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263
>gi|386856052|ref|YP_006260229.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
gi|379999581|gb|AFD24771.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
Length = 149
Score = 38.5 bits (88), Expect = 8.2, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 18 PSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG 72
P + EGP H F+A V+ GE+ + + AE AAAEVAL VL+ RG
Sbjct: 19 PVFEAEAEGPPHDRTFRAQVSVGGEVL-GQGEGRSKKDAERAAAEVALRVLNGRG 72
>gi|344238997|gb|EGV95100.1| Double-stranded RNA-specific editase B2 [Cricetulus griseus]
Length = 708
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 110 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 157
>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
Length = 259
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q+ SY + EGPDH F A V + G I + + ++AE A
Sbjct: 165 YKTELQEMLQKKSPEPISYVILNEEGPDHQKLFTAGVVYCGIIIGQGT-GRSKKEAEQQA 223
Query: 61 AEVALNVLSTRG 72
A++AL L + G
Sbjct: 224 AKIALLELPSNG 235
>gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92]
gi|402546497|ref|ZP_10843372.1| ribonuclease III [Campylobacter sp. FOBRC14]
gi|189043298|sp|A7H186.1|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92]
gi|401017310|gb|EJP76071.1| ribonuclease III [Campylobacter sp. FOBRC14]
Length = 223
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQE+ Q S P Y +R GPDH F+ ++ N EI S + + ++A+
Sbjct: 155 YKTALQEITQASLGTTPIYELVRSFGPDHKKEFEIALLLNDKEI--SRAIANSKKEAQQM 212
Query: 60 AAEVAL 65
AA++AL
Sbjct: 213 AAKIAL 218
>gi|392378865|ref|YP_004986025.1| RNase III [Azospirillum brasilense Sp245]
gi|356880347|emb|CCD01296.1| RNase III [Azospirillum brasilense Sp245]
Length = 249
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A LP Y + +SGP H P+F V L GM +K+ AE+ AA
Sbjct: 178 KTALQEWAQGNKRPLPTYELIEQSGPAHEPVFRIAVRLKGMEPVTATGPSKRVAERKAAS 237
Query: 148 A 148
A
Sbjct: 238 A 238
>gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus]
Length = 701
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 194
>gi|327271786|ref|XP_003220668.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
1-like isoform 1 [Anolis carolinensis]
Length = 695
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 102 NLPV--------YTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
NLPV T SGP H+ F V + GE K+KK ++KNAAIA L
Sbjct: 287 NLPVNFEFFPLKQVTRESGPPHMKSFVTKVSVGEFMGEGE-GKSKKISKKNAAIAVLEEL 345
Query: 154 KRMPNLDSL 162
K++P L ++
Sbjct: 346 KKLPPLPTV 354
>gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris
gallopavo]
Length = 720
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 122 QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAELALKSFVQFPN 169
>gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus]
Length = 746
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 148 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 195
>gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
gi|90101647|sp|Q4L5T5.1|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
Length = 245
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE H Y ++ GP H +FT V L KTKK++E+ AA
Sbjct: 173 FKTQFQEYVHSQNRGDVTYRLIKEEGPAHHRLFTSEVILENEAVATGQGKTKKESEQKAA 232
Query: 147 IAAWSALKRMPNL 159
+A+S LK NL
Sbjct: 233 ESAYSKLKSNNNL 245
>gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus]
gi|33112433|sp|P97616.1|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus
norvegicus]
Length = 746
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 148 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 195
>gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus]
Length = 745
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 194
>gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus]
Length = 701
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 194
>gi|432921417|ref|XP_004080147.1| PREDICTED: uncharacterized protein LOC101158890 [Oryzias latipes]
Length = 1426
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 337 FPQLDTSMLKTSLFDSTSQVGSSRFLGSLNPNPITPTSIRAKSMYTG--GFNPQRIAPAV 394
F LDTS K S + S + + NP+P++P I+ +S+ T G +P + PA
Sbjct: 836 FVSLDTSENKASSACADSHSEQRKQMQPRNPDPVSPIVIKCQSVNTNYPGKHPGNVEPAE 895
Query: 395 Q---IRSVIPVCAAPPSPPITT--PSSSSSSSNPPSTKEAAEVSAASGSKLLNNPSSTQQ 449
Q + + A PP+ P+S SSS P + ++ A GS+L + ++
Sbjct: 896 QESLDSDKVTLGDAKSDPPLRAGGPTSHSSSEENPGLRTETQMKAEKGSELADKKPESKV 955
Query: 450 LNPEFNKKLQ 459
N +KLQ
Sbjct: 956 ANQVALEKLQ 965
>gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 634
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 24 REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR-------- 75
+EGP H P+F+ V + F P + + A+ AAE A+ L S
Sbjct: 72 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 130
Query: 76 ---SL-------TARVLDETGIYKNL-----LQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
SL R + E Y N L E A G +SGP H P F
Sbjct: 131 NTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEPKFV 190
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
++ G F A +KKQ +++AA AA L
Sbjct: 191 YQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus]
gi|33112435|sp|Q9JI20.2|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus]
gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus]
gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus]
gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus]
gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus]
Length = 745
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 194
>gi|302800682|ref|XP_002982098.1| hypothetical protein SELMODRAFT_421581 [Selaginella moellendorffii]
gi|300150114|gb|EFJ16766.1| hypothetical protein SELMODRAFT_421581 [Selaginella moellendorffii]
Length = 871
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 30 APRFKASVNF-----------NGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLT 78
APR +A + NG +ES TL+ AEH+AA+ AL+ L+ S
Sbjct: 352 APRIRAEIRLDGAEQGFQAYVNGVKYESEDGFPTLKAAEHSAAKKALDSLTGGANGTSTV 411
Query: 79 ARVLDETGIYKNLLQETAHRA 99
A TG+ KN+LQE+ A
Sbjct: 412 APGSSMTGLCKNVLQESKREA 432
>gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus]
Length = 731
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 137 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 184
>gi|373486435|ref|ZP_09577109.1| ribonuclease III [Holophaga foetida DSM 6591]
gi|372011685|gb|EHP12275.1| ribonuclease III [Holophaga foetida DSM 6591]
Length = 235
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQETA G P Y + +SGP H P F V++AG+ GE A T K A+ AA
Sbjct: 166 KTTLQETAASRGCPPPTYELLQKSGPDHAPNFLVRVQVAGIEAQGE-APTLKAAQTRAAR 224
Query: 148 AAWSALK 154
A L+
Sbjct: 225 EALRLLR 231
>gi|348169250|ref|ZP_08876144.1| ribonuclease III [Saccharopolyspora spinosa NRRL 18395]
Length = 249
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIF 44
+K LQEL + +P Y +GPDH F A V G+ +
Sbjct: 170 WKTSLQELTASTGLGVPEYRVEEQGPDHRKEFSAYVAVGGQTY 212
>gi|334562985|ref|ZP_08515976.1| ribonuclease III [Corynebacterium bovis DSM 20582]
Length = 246
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 70 TRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMN 129
TR PS LT +D +K +L E L PVY T GP H F+ TV +
Sbjct: 165 TRAPSVGLT---MD----WKTVLLENLSGRHLGEPVYETAVEGPAHDQTFSATVTVGDRV 217
Query: 130 FTGEPAKTKKQAEKNAAIAAWSALK 154
TKK+AE +AA A ++++
Sbjct: 218 MGSGTGHTKKEAEHHAAREAVASIE 242
>gi|344277900|ref|XP_003410735.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2-like [Loxodonta africana]
Length = 757
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 159 QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAELALKSFVQFPN 206
>gi|149751348|ref|XP_001497601.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Equus
caballus]
Length = 1145
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 32/176 (18%)
Query: 5 QLQELAQRSC-FNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEV 63
+ + A ++C FNL + GP H PRFK V +G F P+ + + A+ AA
Sbjct: 455 EYAQFASQTCEFNLIE----QSGPPHEPRFKFQVVISGREF-PPAEAGSKKVAKQDAAMK 509
Query: 64 ALNVLSTRGPSRSL----------TARVLDETGIYK----------------NLLQETAH 97
A+ +L ++ T R ++T + L E H
Sbjct: 510 AMTILLEEAKAKDSGRSEESYYYSTERESEKTAESQPTTPSATSFFSGKNPVTTLLECVH 569
Query: 98 RAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ G + R GP H P F V + F A +KK A++ AA A AL
Sbjct: 570 KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQMAAEEAMKAL 625
>gi|444731290|gb|ELW71648.1| Double-stranded RNA-specific editase B2 [Tupaia chinensis]
Length = 847
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 136 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAELALKSFVQFPN 183
>gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001]
gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001]
Length = 256
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K+ LQE A L +PVY V RSGP H P+F V + + +K+ AE+ AA
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAVRVESIEPGYGEGASKRVAEQEAAR 237
Query: 148 A 148
A
Sbjct: 238 A 238
>gi|283455260|ref|YP_003359824.1| ribonuclease III [Bifidobacterium dentium Bd1]
gi|283101894|gb|ADB09000.1| rncS Ribonuclease III [Bifidobacterium dentium Bd1]
Length = 294
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 54 RQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGP 113
R+ H + L ++T GP+ LD +K L AH GL P Y SGP
Sbjct: 200 RKVVHHLVDDTLAEVATEGPA-------LD----WKTSLTVKAHDMGLGEPYYRMSVSGP 248
Query: 114 GHVPIFTCTVELAGMNFTGEPAK--TKKQAEKNAAIAAWSAL 153
+ +FT L G + K +K++A+ AA A W AL
Sbjct: 249 EYAQVFTAKAMLEGSDEVIGIGKGSSKRKAQLAAAEAGWKAL 290
>gi|224044691|ref|XP_002193461.1| PREDICTED: double-stranded RNA-specific editase B2 [Taeniopygia
guttata]
Length = 744
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAELALKSFVQFPN 194
>gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus]
Length = 742
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 147 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSFVQFPN 194
>gi|449276158|gb|EMC84820.1| Double-stranded RNA-specific editase B2, partial [Columba livia]
Length = 682
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 110 RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158
++GP H P+F VE+ G+ F G TKK+A+ AA A + + PN
Sbjct: 84 QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAELALKSFVQFPN 131
>gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
Length = 248
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K QE HR Y ++ GP H +FT V L KTKK++E+ AA
Sbjct: 173 FKTQFQEFVHRQNKGDVTYRLIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAA 232
Query: 147 IAAWSALKRMPNL 159
A+ ++K+ L
Sbjct: 233 EQAYKSMKKNEKL 245
>gi|126733741|ref|ZP_01749488.1| ribonuclease III [Roseobacter sp. CCS2]
gi|126716607|gb|EBA13471.1| ribonuclease III [Roseobacter sp. CCS2]
Length = 226
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K LQE A G P Y V R+GP H P+FT LA A +K+QAE+ AA
Sbjct: 159 KTALQEWAQARGEVPPQYVEVARTGPDHQPVFTIEARLASGPSEQATAGSKRQAEQAAAT 218
Query: 148 A 148
A
Sbjct: 219 A 219
>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
Length = 520
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K++LQE G P YT R GP H F+ V+ + G K+KK AE++AA
Sbjct: 450 FKSMLQEFVQEKGNTPPCYTIHREFGPDHDKTFSICVKACDIESMG-SGKSKKAAEQHAA 508
Query: 147 IAAWSALKRM 156
A +LK++
Sbjct: 509 QNALKSLKKL 518
>gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
Length = 226
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAK----TKKQAEK 143
K LQE A G P Y + R GP H P+FT V LA TGE A+ +K+QAE+
Sbjct: 159 KTALQELAQARGEPPPGYREISRHGPDHQPLFTIEVRLA----TGESARAEAGSKRQAEQ 214
Query: 144 NAA 146
AA
Sbjct: 215 AAA 217
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.126 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,242,375,312
Number of Sequences: 23463169
Number of extensions: 306148582
Number of successful extensions: 1553968
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 1386
Number of HSP's that attempted gapping in prelim test: 1544558
Number of HSP's gapped (non-prelim): 8254
length of query: 460
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 314
effective length of database: 8,933,572,693
effective search space: 2805141825602
effective search space used: 2805141825602
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 79 (35.0 bits)