BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012622
(460 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 337 bits (863), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 208/412 (50%), Positives = 250/412 (60%), Gaps = 90/412 (21%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEV+LNVLS+R PS+SLTA++LDETGIYKNLLQETAHRAGL+LP+YT+VRSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM FTGE AKTKKQAEKNAAIAAWS+LK+M +LDS + EE++Q VAR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDS-------QDEEKEQEAVAR 173
Query: 181 VLSNFRAKDDNRNNNARRRDQS-QARRRVVCRSHRDNCSAASSTSGNSSQYQQHWRLLDM 239
VLS F+ K+ RRR+ + Q RRR S N + R +++
Sbjct: 174 VLSRFKPKE------VRRRETTNQWRRRT------------SQQDSNKDLLIERLRWINL 215
Query: 240 LMDSA-----LAVPTQ-KQSSYVSLVPPPPPRSTSKILPPITSLCPANIPIPALAKLDEH 293
L + A + P Q K SS++SL+PPPPP +SKILP I +
Sbjct: 216 LTNQASSSSSTSTPNQHKNSSFISLIPPPPPPKSSKILPFI-----------------QQ 258
Query: 294 HHQGDHEEDWLFGKQDAIIKKPFEKEDSSSIIVHGTKSSIQKPFPQLDTSMLKTSLFDST 353
+ +E + I K E S T+ S Q PF
Sbjct: 259 YKDRSSQEAKTETATEMINSKAKVNETS-------TRLSKQMPF---------------- 295
Query: 354 SQVGSSRFLGSLNPNPITPTSIRAKSMYTGGFNPQRIAPAVQIRSVIPVCAA 405
S + F+G + NP + +APAVQ+RSVIPV AA
Sbjct: 296 SDMNRYNFVGGCSVNPYS------------------LAPAVQMRSVIPVFAA 329
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 322 bits (826), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 152/192 (79%), Positives = 172/192 (89%), Gaps = 6/192 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKASVNFNGEIFESP+YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL+ LS++GPS+SLTARVLDETGIYKNLLQETAHRAGL+LPVYT+VRSGPGH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAGM+F GE AKTKKQAEKNAAIAAW +L++MP LD L + EE++Q IVAR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRLDPL------RGEEKEQEIVAR 174
Query: 181 VLSNFRAKDDNR 192
VLS FR K+ R
Sbjct: 175 VLSRFRPKEVKR 186
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 385 FNPQRIAPAVQIRSVIPVC 403
N Q++APAV IRSVIPVC
Sbjct: 308 LNHQKLAPAVHIRSVIPVC 326
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/208 (68%), Positives = 166/208 (79%), Gaps = 3/208 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKA+VNFNGE FESP++C+TLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL A+VLDETGIYKNLLQETAHRAGL LPVYTT+RSGPGH P+FT
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKET---DKPEEQDQAI 177
CTVELAGM FTG P KTKKQA+KNAA+AAWS LK++P + ++ ++Q+Q I
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180
Query: 178 VARVLSNFRAKDDNRNNNARRRDQSQAR 205
VAR L++ + + + + QS R
Sbjct: 181 VARTLASLNQTNGGKTPQQKEKQQSSNR 208
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 138/190 (72%), Positives = 158/190 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVALN LS RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH P+FT
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
TVELAG+ FTG+PAK KKQAEKNAA+AAWS+LK++ S + E + +E +Q I+AR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 VLSNFRAKDD 190
L N+R K++
Sbjct: 181 ALINYRIKEN 190
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 129/155 (83%), Positives = 140/155 (90%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA+V FNGE F+ PS CTTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL LS RGPS SLTARVLDETG+YKNLLQETAHRAGL LPVYTTVRSGPGH P+F+
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155
TVELAGM+F G+PAKTKK AEKNAA+AAWS+LK+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/189 (69%), Positives = 157/189 (83%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA+VNFNGE FESP + TTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL L+ RGPS SL AR+LDETG+YKNLLQE A R G LP YTT RSG GH+P+FT
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLTNKETDKPEEQDQAIVAR 180
CTVELAG+ FTG+PAK KKQAEKNAA AAWS+L+++ ++ ++ E + +EQ+Q +AR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180
Query: 181 VLSNFRAKD 189
L N+R K+
Sbjct: 181 ALLNYRLKE 189
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+YK QLQ A + LP Y REGP HAPRF+ +V F G+ F+S + TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
A++A+ L+ + P A YKNLLQE A + LP Y T SGP H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TVE AG F+GE AKTKK AE +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 3/149 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP Y T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTC 121
++AL L S + +V + YKNLLQE A + G +LPVY+T G VP+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGMNFTGEPAKTKKQAEKNAAIAAW 150
TV +F GEPA TKKQAE NAA A+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT-TLRQAEHA 59
MYK++LQEL Q+ + P YT GP HAP F A+V+ NG F +P + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIF 119
AA+ A + + YK+ LQ A + G LP Y T+R GPGH F
Sbjct: 61 AAKAAFD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 TCTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 153
V + G F E T K+AE AA A +L
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N ++S + AE +A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y +S G P F
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK++V N + S + + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFT 120
AEVAL + P+ + V ETG+ KNLLQE A + +P Y + G P F
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
CTVE+ G+ + G A+TKK AE AA A A++
Sbjct: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
++K++LQE AQ+ P Y ++EGP H F+++V +G + S + AE +A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIF 119
AEVAL L+ ++ + ETG+ KNLLQE A + +P+Y + G V F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
TCTVE+ G+ +TG +TKK AE +A A A++
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHAA 60
YK++LQE Q++ LP Y +G H +FK++V +GE F S ++C ++ AE A
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS-TFCHRRVKDAEQDA 97
Query: 61 AEVALNVLSTRGPSRSLTARV---LDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGHV 116
A+VA + L R + + V +D+ ++ K++L E + + P Y+ ++ G V
Sbjct: 98 AKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKT-EGSV 156
Query: 117 PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
+ +V AG +TG A+ KK AE+ AA AA +L
Sbjct: 157 TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 89 KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIA 148
K LQE A G PVYT + +GP H F TV++ G+ +KKQAE AA++
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 149 AWSAL 153
AW+AL
Sbjct: 223 AWTAL 227
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAE 62
K LQE A P YT I GPDH+ F A+V+ G + + T+ +QAE AAA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGG-LVTASGEGTSKKQAEMAAAL 221
Query: 63 VALNVLS 69
A L+
Sbjct: 222 SAWTALT 228
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT----TLRQAE 57
+K LQEL +P Y GPDH F A+ G SY T + ++AE
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGG-----VSYGTGTGRSKKEAE 229
Query: 58 HAAAEVA 64
AAE A
Sbjct: 230 QQAAESA 236
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE L +P Y SGP H F TV +AG + ++KK+AE+ AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAE 223
Query: 148 AAWSALK 154
+AW A++
Sbjct: 224 SAWKAIR 230
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A+V G+ + S + ++AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGE-GRSKKEAEQQAA 222
Query: 62 EVALNVL 68
E A +
Sbjct: 223 ESAWKAI 229
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT + G+++ ++KK+AE+ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 148 AAWSALK 154
+AW +++
Sbjct: 245 SAWRSIR 251
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCT----TLRQAE 57
+K LQEL +P Y GPDH F A+ G SY T + ++AE
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGG-----VSYGTGTGRSKKEAE 239
Query: 58 HAAAEVA 64
AAE A
Sbjct: 240 QQAAESA 246
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L+ R
Sbjct: 219 AQFAINQLTHR 229
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG++ S T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALNVLSTR 71
A+ A+N L R
Sbjct: 219 AQFAINKLIHR 229
>sp|Q5YS08|RNC_NOCFA Ribonuclease 3 OS=Nocardia farcinica (strain IFM 10152) GN=rnc PE=3
SV=1
Length = 240
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE GL +P Y +GP H FT T + G + ++KK+AE+ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAG 230
Query: 148 AAWSAL 153
AA+ AL
Sbjct: 231 AAYQAL 236
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
+K LQEL +PSY GPDH F A+ G + + ++AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 62 EVALNVLS 69
A L+
Sbjct: 230 GAAYQALT 237
>sp|O69469|RNC_MYCLE Ribonuclease 3 OS=Mycobacterium leprae (strain TN) GN=rnc PE=3 SV=1
Length = 238
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
+K LQE G+ +P Y +GP H FT V + + +KK+AE+ AA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSKKEAEQKAAS 221
Query: 148 AAWSALKRMPNL 159
AAW AL + +
Sbjct: 222 AAWKALDVLGGV 233
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTL----RQAE 57
+K LQEL +PSY GPDH F A V + Y + + ++AE
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVV-----VVMDTEYGSGIGHSKKEAE 216
Query: 58 HAAAEVALNVLSTRG 72
AA A L G
Sbjct: 217 QKAASAAWKALDVLG 231
>sp|Q28V23|RNC_JANSC Ribonuclease 3 OS=Jannaschia sp. (strain CCS1) GN=rnc PE=3 SV=1
Length = 227
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G+ P YT V RSGP H P+F V L+ AK K+QAE+ AA
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAA 217
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNF-NGEIFESPSYCTTLRQAEHAA 60
K LQE AQ P+YT + R GPDHAP F+ V +GE E+ + RQAE A
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQAKAK--RQAEQQA 216
Query: 61 AEVALNVLS 69
A+ L L+
Sbjct: 217 AKDLLAQLA 225
>sp|B2S448|RNC_TREPS Ribonuclease 3 OS=Treponema pallidum subsp. pallidum (strain SS14)
GN=rnc PE=3 SV=1
Length = 254
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQ LA + + P YT + R GPDH+ RF V F P Y T+ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALNVLS 69
A +A LS
Sbjct: 241 ARLAWEQLS 249
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+ LQ AH+ + P YT V R+GP H F V + F +KK AE+ AA
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAA 241
Query: 147 IAAWSAL 153
AW L
Sbjct: 242 RLAWEQL 248
>sp|O83787|RNC_TREPA Ribonuclease 3 OS=Treponema pallidum (strain Nichols) GN=rnc PE=3
SV=1
Length = 254
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQ LA + + P YT + R GPDH+ RF V F P Y T+ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALNVLS 69
A +A LS
Sbjct: 241 ARLAWEQLS 249
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK+ LQ AH+ + P YT V R+GP H F V + F +KK AE+ AA
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAA 241
Query: 147 IAAWSAL 153
AW L
Sbjct: 242 RLAWEQL 248
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQEL QR + Y+ + E GP H F + V+ NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 61 AEVALNVLSTRG 72
A++AL L T G
Sbjct: 233 AQMALQKLKTIG 244
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K+ LQE R G+ + Y+ + GP H F V L G K+KK+AE++AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 147 IAAWSALK 154
A LK
Sbjct: 234 QMALQKLK 241
>sp|A0LGM1|RNC_SYNFM Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rnc PE=3 SV=1
Length = 242
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQEL Q P Y R EGPDH F +V G++ S + + A+ AA
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGS-GKSKKDAQQAA 226
Query: 61 AEVALNVLS 69
AE AL +++
Sbjct: 227 AEKALQIIA 235
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 71 RGPSRSLTARVLDETGIYKNLLQE-TAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGM 128
R R + LD+ YK LQE T R L PVY R GP H F V L G
Sbjct: 153 RFEKREHVLKALDKD--YKTQLQELTQARYKLT-PVYVLDREEGPDHDKTFHMNVVLEGQ 209
Query: 129 NFTGEPAKTKKQAEKNAA------IAA--WS 151
G K+KK A++ AA IAA WS
Sbjct: 210 VLAGGSGKSKKDAQQAAAEKALQIIAADSWS 240
>sp|Q73NX5|RNC_TREDE Ribonuclease 3 OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnc PE=3 SV=1
Length = 246
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F SV+ NG+++ P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVA 64
A+VA
Sbjct: 231 AKVA 234
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 81 VLDETGI--YKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKT 137
VL++ I YK+LLQE + +P Y + SGP H F +V + G + KT
Sbjct: 163 VLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKT 222
Query: 138 KKQAEKNAAIAAWSAL 153
KK+AE++ A A+ L
Sbjct: 223 KKEAEQSVAKVAYENL 238
>sp|Q1D5X9|RNC_MYXXD Ribonuclease 3 OS=Myxococcus xanthus (strain DK 1622) GN=rnc PE=3
SV=1
Length = 260
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LLQE AH P Y V SGP H +F + L F ++KK+AE++AA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAA 232
Query: 147 IAAWSALK 154
A L+
Sbjct: 233 QATLEKLR 240
>sp|A8I3B5|RNC_AZOC5 Ribonuclease 3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=rnc PE=3 SV=1
Length = 235
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAI 147
K +LQE A GL PVY V RSGP H P F V+L G+ +K+ A+K AA
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAAS 221
Query: 148 A 148
A
Sbjct: 222 A 222
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNG 41
K LQE AQ P Y + R GPDHAPRF+ +V+ G
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPG 201
>sp|Q2HJ92|PRKRA_BOVIN Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Bos taurus GN=PRKRA PE=2 SV=1
Length = 313
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 94 ETAHRAGL---NLPVYTTVRSGPG-HVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
+ H G+ N+PVY RS HVP FT V + + TGE +KK A+ AA AA
Sbjct: 37 QVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAEAA 95
Query: 150 WSALK 154
+ LK
Sbjct: 96 INILK 100
>sp|O75569|PRKRA_HUMAN Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Homo sapiens GN=PRKRA PE=1 SV=1
Length = 313
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQIHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 94 ETAHRAGL---NLPVYTTVRSGPG-HVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
+ H G+ N+PVY RS HVP FT V + + TGE +KK A+ AA AA
Sbjct: 37 QVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAEAA 95
Query: 150 WSALK 154
+ LK
Sbjct: 96 INILK 100
>sp|Q4V8C7|PRKRA_RAT Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Rattus norvegicus GN=Prkra PE=1 SV=1
Length = 313
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 102 NLPVYTTVRSGPG-HVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
N+PVY RS HVP FT V + + TGE +KK A+ AA AA + LK
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAEAAINILK 100
>sp|Q9WTX2|PRKRA_MOUSE Interferon-inducible double stranded RNA-dependent protein kinase
activator A OS=Mus musculus GN=Prkra PE=1 SV=1
Length = 313
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 16 NLPSYTCIREGPD-HAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG-- 72
N+P Y C R H P F V G+I T+ + A+H AAE A+N+L
Sbjct: 48 NIPVYECERSDVQVHVPTFTFRVTV-GDI-TCTGEGTSKKLAKHRAAEAAINILKANASI 105
Query: 73 -----------PSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYT-TVRSGPGHVPIFT 120
PS+ + L+ G LQE A G LP YT + GP H +T
Sbjct: 106 CFAVPDPLMPDPSKQPKNQ-LNPIGS----LQELAIHHGWRLPEYTLSQEGGPAHKREYT 160
Query: 121 CTVELAGMNFTGEPAKTKKQAEKNAA 146
L TG+ A +KKQA++NAA
Sbjct: 161 TICRLESFMETGKGA-SKKQAKRNAA 185
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 94 ETAHRAGL---NLPVYTTVRSGPG-HVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAA 149
+ H G+ N+PVY RS HVP FT V + + TGE +KK A+ AA AA
Sbjct: 37 QVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAEAA 95
Query: 150 WSALK 154
+ LK
Sbjct: 96 INILK 100
>sp|Q67PF5|RNC_SYMTH Ribonuclease 3 OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=rnc PE=3 SV=1
Length = 235
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 YKNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE QR P Y + EGP H RF+ V F G + + ++AE A
Sbjct: 165 YKTQLQEQLQRQGAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLL-GTGWGRNKKEAEQEA 223
Query: 61 AEVAL 65
A AL
Sbjct: 224 ARQAL 228
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
YK LQE R G P Y V GP H+ F V G + KK+AE+ AA
Sbjct: 165 YKTQLQEQLQRQGAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLLGTGWGRNKKEAEQEAA 224
>sp|Q5LNK5|RNC_RUEPO Ribonuclease 3 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171
/ DSS-3) GN=rnc PE=3 SV=1
Length = 225
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE A G P Y V RSGP H P+FT ELA A K+QAE+ AA
Sbjct: 159 KTALQEWAQARGQTPPRYELVKRSGPDHAPVFTILAELADGRRAEATAGAKRQAEQAAA 217
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNF-NGEIFESPSYCTTLRQAEHAA 60
K LQE AQ P Y + R GPDHAP F +G E+ + RQAE AA
Sbjct: 159 KTALQEWAQARGQTPPRYELVKRSGPDHAPVFTILAELADGRRAEATAGAK--RQAEQAA 216
Query: 61 AEVALNVL 68
A L+ L
Sbjct: 217 ARKLLDSL 224
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +QEL Q + P Y ++E GPDH F A V N E+ S + ++AE A
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGS-GKSKKEAEQNA 220
Query: 61 AEVALNVLS 69
A A LS
Sbjct: 221 AHFAFQKLS 229
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 86 GIYKNLLQETAHRAGLNLPVYTTVR-SGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKN 144
G YK ++QE + P Y V+ SGP H F V++ K+KK+AE+N
Sbjct: 160 GDYKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQN 219
Query: 145 AAIAAWSALKR 155
AA A+ L +
Sbjct: 220 AAHFAFQKLSK 230
>sp|B9KSA7|RNC_RHOSK Ribonuclease 3 OS=Rhodobacter sphaeroides (strain KD131 / KCTC
12085) GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 41 GEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAG 100
G+ E+ L AA ++ L + R A+V + K LQE A G
Sbjct: 117 GDALEAVIAAVYLDAGFEAARQLVLRLWGAR------IAQVERDARDAKTALQEWAQARG 170
Query: 101 LNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
L P Y V RSGP H PIFT V L A TK+ AE+
Sbjct: 171 LPPPTYEAVDRSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNF-NGE 42
K LQE AQ P+Y + R GPDHAP F V NGE
Sbjct: 159 KTALQEWAQARGLPPPTYEAVDRSGPDHAPIFTVEVRLGNGE 200
>sp|Q3J5W1|RNC_RHOS4 Ribonuclease 3 OS=Rhodobacter sphaeroides (strain ATCC 17023 /
2.4.1 / NCIB 8253 / DSM 158) GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 41 GEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAG 100
G+ E+ L AA ++ L + R A+V + K LQE A G
Sbjct: 117 GDALEAVIAAVYLDAGFEAARQLVLRLWGAR------IAQVERDARDAKTALQEWAQARG 170
Query: 101 LNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
L P Y V RSGP H PIFT V L A TK+ AE+
Sbjct: 171 LPPPTYEAVDRSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNF-NGE 42
K LQE AQ P+Y + R GPDHAP F V NGE
Sbjct: 159 KTALQEWAQARGLPPPTYEAVDRSGPDHAPIFTVEVRLGNGE 200
>sp|A3PGF8|RNC_RHOS1 Ribonuclease 3 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 41 GEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAG 100
G+ E+ L AA ++ L + R A+V + K LQE A G
Sbjct: 117 GDALEAVIAAVYLDAGFEAARQLVLRLWGAR------IAQVERDARDAKTALQEWAQARG 170
Query: 101 LNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
L P Y V RSGP H PIFT V L A TK+ AE+
Sbjct: 171 LPPPTYEAVDRSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNF-NGE 42
K LQE AQ P+Y + R GPDHAP F V NGE
Sbjct: 159 KTALQEWAQARGLPPPTYEAVDRSGPDHAPIFTVEVRLGNGE 200
>sp|D2GVP7|STAU1_AILME Double-stranded RNA-binding protein Staufen homolog 1 OS=Ailuropoda
melanoleuca GN=STAU1 PE=3 SV=1
Length = 580
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 71 RGPSRSLTARVLDETGIYKNLLQETAHRA-GLNLPVYTTV--RSGPGHVPIFTCTVELAG 127
R P + R +E + K+ + + A NLPV V SGP H+ F V +
Sbjct: 172 RRPGEQVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKSFVTRVSVG- 230
Query: 128 MNFTGE-PAKTKKQAEKNAAIAAWSALKRMPNLDSL 162
F GE K+KK ++KNAAIA LK++P L +
Sbjct: 231 -EFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTF 265
>sp|B4RCU4|RNC_PHEZH Ribonuclease 3 OS=Phenylobacterium zucineum (strain HLK1) GN=rnc
PE=3 SV=1
Length = 238
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
K LQE GL LP Y V + GP H P FT V++AG ++++ AEK AA
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAA 221
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQ-AEHAA 60
K QLQE Q LP+Y + +EGP HAP F V G F + RQ AE AA
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAG--FGAERGEGRSRQAAEKAA 220
Query: 61 AEVALNVLSTRGP 73
A+ L L GP
Sbjct: 221 AQCML--LKREGP 231
>sp|A4WVP5|RNC_RHOS5 Ribonuclease 3 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=rnc PE=3 SV=1
Length = 229
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 89 KNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEK 143
K LQE A GL P Y V RSGP H PIFT V L A TK+ AE+
Sbjct: 159 KTALQEWAQARGLPPPCYEAVDRSGPDHAPIFTVEVRLGNGETERSAAGTKRVAEQ 214
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNF-NGE 42
K LQE AQ P Y + R GPDHAP F V NGE
Sbjct: 159 KTALQEWAQARGLPPPCYEAVDRSGPDHAPIFTVEVRLGNGE 200
>sp|A4J683|RNC_DESRM Ribonuclease 3 OS=Desulfotomaculum reducens (strain MI-1) GN=rnc
PE=3 SV=1
Length = 246
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK +LQE+ Q+S + +YT + E GPDH F A V + G++ S + ++AE A
Sbjct: 165 YKTELQEILQQSSPDPLTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSK-KEAEQQA 223
Query: 61 AEVALNVLSTRGPS 74
A+ A L G S
Sbjct: 224 AKDAFQHLEGMGKS 237
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 44 FESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNL 103
FE+ L Q + LN LS+ + A LD YK LQE ++ +
Sbjct: 125 FEALLGAIYLDQGLEISRHFVLNCLSS--IIDDVVAGRLDRD--YKTELQEILQQSSPDP 180
Query: 104 PVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156
YT + SGP H FT V G +KK+AE+ AA A+ L+ M
Sbjct: 181 LTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHLEGM 234
>sp|A8Z6F6|RNC_CAMC1 Ribonuclease 3 OS=Campylobacter concisus (strain 13826) GN=rnc PE=3
SV=1
Length = 223
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHA 59
YK LQE+ Q + +P+Y I GPDH F+ ++ NG EI S + ++ +QA+
Sbjct: 155 YKTALQEVTQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEI--SRAVGSSKKQAQQL 212
Query: 60 AAEVAL 65
AA++AL
Sbjct: 213 AAKIAL 218
>sp|Q053L4|RNC_LEPBL Ribonuclease 3 OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=rnc PE=3 SV=1
Length = 247
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
YK QLQE +Q+ LP Y E GPDH+ F+ SV + +E+ Y + + AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQ-WEASGYGASKKIAEQNA 235
Query: 61 AEVALNVLSTRG 72
A+ L + RG
Sbjct: 236 AK-ELYIRIRRG 246
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 12/145 (8%)
Query: 15 FNLPSYTCIREGPDHAP---RFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71
NL Y + +G ++ R K + N +FES L + A + + L
Sbjct: 109 LNLGEYLLLGKGEKNSQGKGRRKIAAN----LFESLVGAIYLDRGFEVAEKFIVQHLLEF 164
Query: 72 GPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVY-TTVRSGPGHVPIFTCTVELAGMNF 130
+ + V D YK LQE + + LPVY SGP H +F +V +
Sbjct: 165 AENPDMEESVRD----YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQWE 220
Query: 131 TGEPAKTKKQAEKNAAIAAWSALKR 155
+KK AE+NAA + ++R
Sbjct: 221 ASGYGASKKIAEQNAAKELYIRIRR 245
>sp|Q65JQ5|RNC_BACLD Ribonuclease 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=rnc PE=3 SV=1
Length = 249
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
+K+QLQE QR + Y ++E GP H F+A+V+ GE+ S + ++AE A
Sbjct: 176 FKSQLQEFVQRDGRGILEYKILQEKGPAHNREFEANVSLKGEVLGVGS-GRSKKEAEQHA 234
Query: 61 AEVALNVL 68
A+ AL L
Sbjct: 235 AQEALAKL 242
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETAHRAGLNLPVYTTVRS-GPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAA 146
+K+ LQE R G + Y ++ GP H F V L G ++KK+AE++AA
Sbjct: 176 FKSQLQEFVQRDGRGILEYKILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAA 235
Query: 147 IAAWSALKR 155
A + L++
Sbjct: 236 QEALAKLQK 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,225,750
Number of Sequences: 539616
Number of extensions: 7175109
Number of successful extensions: 35982
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 34152
Number of HSP's gapped (non-prelim): 1666
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)