Query 012622
Match_columns 460
No_of_seqs 248 out of 1734
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732 Staufen and related do 99.9 1.7E-22 3.6E-27 203.4 17.7 153 2-158 40-214 (339)
2 COG0571 Rnc dsRNA-specific rib 99.8 1.8E-19 3.8E-24 175.5 8.5 148 3-157 85-233 (235)
3 PRK12371 ribonuclease III; Rev 99.8 4.3E-19 9.2E-24 172.2 8.5 144 4-156 88-232 (235)
4 PRK14718 ribonuclease III; Pro 99.7 2E-18 4.3E-23 180.1 8.3 146 3-155 75-222 (467)
5 PRK12372 ribonuclease III; Rev 99.7 9.7E-18 2.1E-22 173.7 8.9 146 3-155 75-222 (413)
6 PRK00102 rnc ribonuclease III; 99.6 3.4E-16 7.3E-21 148.6 7.8 146 3-155 82-228 (229)
7 cd00048 DSRM Double-stranded R 99.6 2.3E-15 4.9E-20 115.1 9.0 67 87-153 1-68 (68)
8 TIGR02191 RNaseIII ribonucleas 99.6 7.6E-16 1.6E-20 144.9 7.0 144 3-153 76-220 (220)
9 PHA02701 ORF020 dsRNA-binding 99.6 3E-15 6.4E-20 141.0 9.1 71 85-156 107-178 (183)
10 smart00358 DSRM Double-strande 99.6 6.3E-15 1.4E-19 113.1 8.7 66 88-154 1-67 (67)
11 PF00035 dsrm: Double-stranded 99.6 1.3E-14 2.9E-19 112.0 8.2 66 88-153 1-67 (67)
12 PHA03103 double-strand RNA-bin 99.5 1.5E-14 3.3E-19 136.4 9.3 71 85-156 108-178 (183)
13 KOG3732 Staufen and related do 99.3 3.7E-12 8E-17 129.2 9.7 162 50-214 2-184 (339)
14 PF14709 DND1_DSRM: double str 99.3 7.2E-12 1.6E-16 103.7 8.1 68 87-154 2-80 (80)
15 PHA02701 ORF020 dsRNA-binding 99.2 1.8E-11 3.9E-16 115.6 8.5 67 2-70 110-177 (183)
16 smart00358 DSRM Double-strande 99.2 3.7E-11 8E-16 92.1 8.4 65 2-68 1-66 (67)
17 cd00048 DSRM Double-stranded R 99.2 5.6E-11 1.2E-15 90.7 8.6 66 2-68 2-68 (68)
18 PF00035 dsrm: Double-stranded 99.2 7.3E-11 1.6E-15 91.1 7.4 66 2-68 1-67 (67)
19 PHA03103 double-strand RNA-bin 99.2 8E-11 1.7E-15 111.4 8.4 67 2-70 111-177 (183)
20 KOG2777 tRNA-specific adenosin 99.2 3E-10 6.4E-15 121.7 13.5 197 18-227 10-237 (542)
21 PRK12371 ribonuclease III; Rev 99.1 2.1E-10 4.6E-15 111.7 8.7 68 2-70 163-231 (235)
22 COG0571 Rnc dsRNA-specific rib 99.0 1.2E-09 2.7E-14 106.9 8.4 69 2-71 163-232 (235)
23 PRK14718 ribonuclease III; Pro 98.9 1.7E-09 3.7E-14 113.9 8.5 69 2-71 153-223 (467)
24 PRK12372 ribonuclease III; Rev 98.9 3.6E-09 7.7E-14 110.6 8.7 69 2-71 153-223 (413)
25 PF14709 DND1_DSRM: double str 98.9 6E-09 1.3E-13 86.4 7.3 68 2-69 3-80 (80)
26 PRK00102 rnc ribonuclease III; 98.8 1.2E-08 2.7E-13 97.0 8.6 68 2-70 160-228 (229)
27 KOG1817 Ribonuclease [RNA proc 98.7 9.5E-09 2.1E-13 107.6 5.8 140 7-155 356-503 (533)
28 TIGR02191 RNaseIII ribonucleas 98.7 3.2E-08 6.8E-13 93.4 8.2 66 2-68 154-220 (220)
29 KOG4334 Uncharacterized conser 98.5 8.1E-07 1.8E-11 94.4 10.8 155 1-161 376-565 (650)
30 KOG3769 Ribonuclease III domai 97.8 4.2E-05 9E-10 77.7 7.2 73 85-157 231-305 (333)
31 KOG4334 Uncharacterized conser 97.5 7E-05 1.5E-09 80.1 4.3 67 88-155 377-443 (650)
32 KOG0921 Dosage compensation co 97.2 0.00036 7.8E-09 79.3 4.8 155 2-158 3-243 (1282)
33 KOG1817 Ribonuclease [RNA proc 96.9 0.0032 6.9E-08 67.1 8.1 69 2-71 429-504 (533)
34 KOG2777 tRNA-specific adenosin 96.9 0.0032 7E-08 68.6 8.3 65 2-73 92-157 (542)
35 PF03368 Dicer_dimer: Dicer di 96.5 0.0067 1.4E-07 51.3 6.3 69 89-161 2-79 (90)
36 KOG3792 Transcription factor N 96.1 0.0049 1.1E-07 68.7 4.0 128 22-154 396-570 (816)
37 PF14954 LIX1: Limb expression 95.1 0.096 2.1E-06 51.8 8.4 95 85-189 20-125 (252)
38 KOG0921 Dosage compensation co 94.2 0.058 1.3E-06 62.2 5.1 69 87-156 2-71 (1282)
39 KOG3769 Ribonuclease III domai 93.9 0.079 1.7E-06 54.5 4.9 70 2-72 234-305 (333)
40 KOG2334 tRNA-dihydrouridine sy 91.3 0.091 2E-06 56.3 1.4 72 85-159 374-446 (477)
41 PF03368 Dicer_dimer: Dicer di 79.0 5.8 0.00013 33.5 5.9 65 3-72 2-75 (90)
42 PF14954 LIX1: Limb expression 77.1 6.5 0.00014 39.3 6.3 73 4-76 25-104 (252)
43 PF14622 Ribonucleas_3_3: Ribo 71.8 0.27 5.7E-06 43.6 -4.3 66 3-71 62-127 (128)
44 KOG2334 tRNA-dihydrouridine sy 65.9 2.3 5E-05 46.0 0.5 66 2-70 377-442 (477)
45 KOG3792 Transcription factor N 51.8 7.9 0.00017 44.3 1.6 49 104-153 386-441 (816)
46 KOG2500 Uncharacterized conser 43.1 33 0.00071 34.6 4.2 22 254-276 182-203 (253)
47 TIGR03549 conserved hypothetic 38.1 4.8E+02 0.011 30.5 12.9 64 87-155 160-227 (718)
48 smart00535 RIBOc Ribonuclease 34.9 8.2 0.00018 33.3 -1.2 66 3-71 60-125 (129)
49 PF02169 LPP20: LPP20 lipoprot 30.8 57 0.0012 26.5 3.2 28 129-156 14-41 (92)
50 KOG0701 dsRNA-specific nucleas 26.3 72 0.0016 40.1 4.2 72 87-158 1515-1601(1606)
51 PF14657 Integrase_AP2: AP2-li 24.9 2.1E+02 0.0045 21.1 5.0 22 132-154 21-42 (46)
52 cd00593 RIBOc RIBOc. Ribonucle 20.7 21 0.00046 30.7 -1.2 66 3-71 62-127 (133)
No 1
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.89 E-value=1.7e-22 Score=203.41 Aligned_cols=153 Identities=27% Similarity=0.283 Sum_probs=129.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCC-----
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR----- 75 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~----- 75 (460)
..+.|||+|.++++ .|.|+++ ++|+.|.+.|+++|.|+. |++.+.|.+||.|++.||..+|..|....+..
T Consensus 40 ~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~--~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~ 116 (339)
T KOG3732|consen 40 PISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGE--ITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKD 116 (339)
T ss_pred hHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEee--eEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence 57899999999885 4799999 689999999999999985 44445799999999999999999998753321
Q ss_pred ----cccc-------ccc----cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHH
Q 012622 76 ----SLTA-------RVL----DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKK 139 (460)
Q Consensus 76 ----~l~d-------~~k----D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKK 139 (460)
.... ... +...||+++||||||+++|++|.|+++ +.|++|.+.|++.|.+++.. ..|.|.|||
T Consensus 117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~-~~GkG~sKK 195 (339)
T KOG3732|consen 117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT-EEGKGPSKK 195 (339)
T ss_pred cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEeccee-eecCCchHH
Confidence 0000 011 136799999999999999999999999 88999999999999999875 458999999
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 012622 140 QAEKNAAIAAWSALKRMPN 158 (460)
Q Consensus 140 eAEQ~AAk~AL~~L~~~~~ 158 (460)
.||++||.+||+.|.-...
T Consensus 196 iAKRnAAeamLe~l~~~~~ 214 (339)
T KOG3732|consen 196 IAKRNAAEAMLESLGFVKP 214 (339)
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 9999999999999986553
No 2
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.79 E-value=1.8e-19 Score=175.51 Aligned_cols=148 Identities=26% Similarity=0.311 Sum_probs=128.4
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCccccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVL 82 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~k 82 (460)
...|.+|++. +++..|..++.|+.....|. +..|-++.||+.++|++.+.+...|.+++...+......+...
T Consensus 85 ~~~La~ia~~--l~l~~~l~lg~ge~~~gg~~-~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~~~~~~~~---- 157 (235)
T COG0571 85 EESLAEIARE--LGLGDYLRLGKGEEKSGGRR-RESILADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDAG---- 157 (235)
T ss_pred HHHHHHHHHH--hCccchhhccCChhhcCCCC-chhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhcccc----
Confidence 3578999999 45889999988888877777 4666677899999999999999999999999988876544321
Q ss_pred cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCC
Q 012622 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157 (460)
Q Consensus 83 D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~ 157 (460)
+...|||+.||||||+++..+|.|+++ +.||+|++.|++.|.|+|..++.|.|+|||+|||.||+.||..|....
T Consensus 158 ~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~ 233 (235)
T COG0571 158 DQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE 233 (235)
T ss_pred ccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcccc
Confidence 234679999999999999999999999 669999999999999999999999999999999999999999997643
No 3
>PRK12371 ribonuclease III; Reviewed
Probab=99.77 E-value=4.3e-19 Score=172.19 Aligned_cols=144 Identities=24% Similarity=0.178 Sum_probs=116.2
Q ss_pred HHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCcccccccc
Q 012622 4 NQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLD 83 (460)
Q Consensus 4 S~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~kD 83 (460)
..|.++|.+.| |+.|.+...+..... -.....+-++.||+.++|++++.+.+.|.+++...|........ .
T Consensus 88 ~~La~ia~~lg--L~~~i~~~~~~~~~~-~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~~~~~~~~------~ 158 (235)
T PRK12371 88 ETCAAIADEIG--LHDLIRTGSDVKKLT-GKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQKRALETD------A 158 (235)
T ss_pred HHHHHHHHHCC--cHHHhccCcchhhcC-CcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc------c
Confidence 56889999955 778887643321110 00112455788999999999999999999999888876543221 1
Q ss_pred ccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 84 ETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
...|||+.||||||+.+...|.|+++ +.||+|.+.|+|.|.|+|..++.|.|+|||+||++||+.||+.|...
T Consensus 159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~~ 232 (235)
T PRK12371 159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGVW 232 (235)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhhh
Confidence 24589999999999999999999998 78999999999999999999999999999999999999999999764
No 4
>PRK14718 ribonuclease III; Provisional
Probab=99.74 E-value=2e-18 Score=180.12 Aligned_cols=146 Identities=21% Similarity=0.194 Sum_probs=119.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCccccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVL 82 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~k 82 (460)
...|.+++++.| |..|.+++.|......+. .-.|.++.||+.++++|++.+.+.+..++...|...+..... .
T Consensus 75 netLA~IAr~LG--L~d~Lrlg~gE~~sgG~~-~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~p~i~~~d~----~ 147 (467)
T PRK14718 75 QQSLYEIAQALN--ISDGLRLGEGELRSGGFR-RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDHIDP----R 147 (467)
T ss_pred hHHHHHHHHHcC--chHHHhhCCcccccCCCC-ChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhhcc----c
Confidence 457899999955 678888766654443343 346677889999999999999999988888888765443221 1
Q ss_pred cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEe-ecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN-FTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 83 D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~-fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
....|||+.||||||++++.+|.|+++ +.||+|.+.|++.|.|+|.. ++.|.|.|||+|||+||+.||+.|..
T Consensus 148 ~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~ 222 (467)
T PRK14718 148 TLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTA 222 (467)
T ss_pred ccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 224589999999999999999999998 78999999999999999964 47899999999999999999999974
No 5
>PRK12372 ribonuclease III; Reviewed
Probab=99.72 E-value=9.7e-18 Score=173.69 Aligned_cols=146 Identities=21% Similarity=0.190 Sum_probs=118.8
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCccccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVL 82 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~k 82 (460)
...|.++|.+.+ |..|.+++.|......|. ...|-++.||+.+++++++.+.+.+..++.+.|...+..... .
T Consensus 75 n~tLA~IA~~Lg--L~~~Lrlg~ge~~sgg~~-~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~p~l~~~~~----~ 147 (413)
T PRK12372 75 QQSLYEIAQALN--ISEGLRLGEGELRSGGFR-RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDHIDP----R 147 (413)
T ss_pred hHHHHHHHHHcC--chHhhhcCcchhhcCCCC-CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccc----c
Confidence 467899999955 678887765544333343 346677889999999999999999888888887765443221 1
Q ss_pred cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEe-ecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMN-FTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 83 D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~-fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
+...|||+.||||||++++..|.|+++ +.||+|.+.|+|.|.|+|.. ++.|.|.|||+|||+||+.||+.|..
T Consensus 148 ~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 148 TLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred cccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 224579999999999999999999998 78999999999999999854 57899999999999999999999984
No 6
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.64 E-value=3.4e-16 Score=148.57 Aligned_cols=146 Identities=29% Similarity=0.358 Sum_probs=115.4
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCccccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVL 82 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~k 82 (460)
...|..++.+.| +..|.....|...... .....+-++.||+.++|.+.+.+...|.+++...+......... .
T Consensus 82 n~~la~~a~~lg--l~~~i~~~~~~~~~~~-~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~~l~~~~~----~ 154 (229)
T PRK00102 82 EESLAEIARELG--LGEYLLLGKGEEKSGG-RRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEPRIEEIDL----G 154 (229)
T ss_pred HHHHHHHHHHCC--cHHHHccCcHHHHcCC-CCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcc----c
Confidence 467899999955 6677766433211111 11234567789999999999999998888888777765443221 1
Q ss_pred cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 83 D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
....|||+.|+||||+.++..|.|+++ ..|+.|.+.|+|+|.++|..++.|.|.|||+||++||+.||+.|+.
T Consensus 155 ~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 155 DLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 235689999999999999999999987 6799999999999999999999999999999999999999999864
No 7
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.62 E-value=2.3e-15 Score=115.08 Aligned_cols=67 Identities=42% Similarity=0.533 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHH
Q 012622 87 IYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153 (460)
Q Consensus 87 NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L 153 (460)
|||+.|+||||++++..|.|+++ ..|++|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 69999999999999999999996 78999999999999999988888999999999999999999875
No 8
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.61 E-value=7.6e-16 Score=144.89 Aligned_cols=144 Identities=28% Similarity=0.330 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCccccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVL 82 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~k 82 (460)
...|..+|.+.| +..|.....+....... -...+-++.||+.+||.+.+.+.+.|.+++...|......... .
T Consensus 76 n~~la~~a~~~g--l~~~i~~~~~~~~~~~~-~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~----~ 148 (220)
T TIGR02191 76 EESLAEVARELG--LGKFLLLGKGEEKSGGR-RRESILADAFEALIGAIYLDSGLEAARKFILKLLIPRIDAIEK----E 148 (220)
T ss_pred HHHHHHHHHHCC--cHHHhccCchHhhcCCc-ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhc----c
Confidence 457889999855 66776653222111111 1134557789999999999999988888888777765433221 1
Q ss_pred cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHH
Q 012622 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153 (460)
Q Consensus 83 D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L 153 (460)
....|||+.|+||||++++..|.|+++ ..|++|.+.|+|.|.++|..++.|.|.|||+||++||+.||+.|
T Consensus 149 ~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 149 ETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred cccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 245689999999999999989999998 66999999999999999999999999999999999999999875
No 9
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.59 E-value=3e-15 Score=140.97 Aligned_cols=71 Identities=25% Similarity=0.306 Sum_probs=66.3
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
..|||+.||||||+.+..+ .|+++ +.||+|.+.|++.|.|+|..++.|.|+|||+|||+||+.||+.|...
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 5699999999999999888 89888 67999999999999999999999999999999999999999999643
No 10
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.59 E-value=6.3e-15 Score=113.07 Aligned_cols=66 Identities=44% Similarity=0.588 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHh
Q 012622 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154 (460)
Q Consensus 88 yKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~ 154 (460)
||+.|+||||++++ .|.|++. ..|++|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||..|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhcC
Confidence 68999999999999 8999998 579999999999999999888899999999999999999999873
No 11
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.56 E-value=1.3e-14 Score=111.95 Aligned_cols=66 Identities=32% Similarity=0.489 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHcCCCCCeEEeeccCCCCC-CeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHH
Q 012622 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHV-PIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153 (460)
Q Consensus 88 yKS~LQE~cQK~~l~lP~YevvesGP~H~-p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L 153 (460)
||+.|+|||++.++.++.|.+...|++|. +.|.|+|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 78999999999998887777766666555 8999999999999999999999999999999999987
No 12
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.55 E-value=1.5e-14 Score=136.44 Aligned_cols=71 Identities=27% Similarity=0.359 Sum_probs=63.8
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
..|||+.||||||+++... .|.+.+.||+|.+.|++.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred cCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999998775 4544488999999999999999999999999999999999999999999653
No 13
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.33 E-value=3.7e-12 Score=129.19 Aligned_cols=162 Identities=28% Similarity=0.343 Sum_probs=117.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCcccccccccc-CChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECC
Q 012622 50 CTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDET-GIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAG 127 (460)
Q Consensus 50 G~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~kD~~-~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G 127 (460)
|....+|+|.||..+|..|........... ..|.. ..+++.|||||.++++. |.|+++ ++||.|.+.|++.|.|+.
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~-~~~~g~KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~ 79 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGVML-NADPGAKSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGE 79 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhccc-ccCcccCChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEee
Confidence 567889999999999999887643321100 01222 67999999999999965 689999 689999999999999985
Q ss_pred EeecccccCCHHHHHHHHHHHHHHHHhcCCCCCCCC--------CCCCCCCchh-------hHHHHHHHHHhhhcccccc
Q 012622 128 MNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLT--------NKETDKPEEQ-------DQAIVARVLSNFRAKDDNR 192 (460)
Q Consensus 128 ~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~~s~~--------~~~~~~~~~~-------eq~~va~~L~~~~~k~~~~ 192 (460)
.. +.|.|+|||.||+.||..+|..|+..+..-... .........+ .+.--...|+++.+..+-+
T Consensus 80 ~~-a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k 158 (339)
T KOG3732|consen 80 IT-ATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWK 158 (339)
T ss_pred eE-EecCCCchhHHHHHHHHHHHHHHhcCCCccccccCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCC
Confidence 54 568999999999999999999999887543221 0111111111 2333489999999988767
Q ss_pred ch-hhhhhccccccceee---eccCC
Q 012622 193 NN-NARRRDQSQARRRVV---CRSHR 214 (460)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~---~~~~~ 214 (460)
-| +.--.+.-..|||.| |++-.
T Consensus 159 ~P~yelv~E~G~~~~rEFv~q~sv~~ 184 (339)
T KOG3732|consen 159 LPEYELVQESGVPHRREFVIQCSVEN 184 (339)
T ss_pred CCceEEEeccCCCccceEEEEEEecc
Confidence 66 666666667777766 66543
No 14
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.30 E-value=7.2e-12 Score=103.75 Aligned_cols=68 Identities=35% Similarity=0.536 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeec---------cc-ccCCHHHHHHHHHHHHHHHHh
Q 012622 87 IYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFT---------GE-PAKTKKQAEKNAAIAAWSALK 154 (460)
Q Consensus 87 NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg---------~G-~G~SKKeAEQ~AAk~AL~~L~ 154 (460)
++++.|+|+|++++|..|.|++. +.||+|.+.|++.|.|.+..+. .+ ...+||+|+..||+.||..|+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999998 7899999999999999987652 22 347999999999999999884
No 15
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.25 E-value=1.8e-11 Score=115.58 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||+.+..+ .|.++ ..|++|.+.|++.|.|+|..++.| .|.|||+||++||+.+|..|..
T Consensus 110 pKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 110 PVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILIN 177 (183)
T ss_pred ccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence 7999999999998887 89887 679999999999999999999987 6999999999999999998864
No 16
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.24 E-value=3.7e-11 Score=92.12 Aligned_cols=65 Identities=43% Similarity=0.622 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHH
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL 68 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L 68 (460)
+|+.|+||||++++ .|.|.+. ..|+.|.+.|++.|.|+|..+..+ .|.+||.|++.||+.+|..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEG-EGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHhc
Confidence 68999999999998 7999998 479999999999999999877766 69999999999999999876
No 17
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.22 E-value=5.6e-11 Score=90.75 Aligned_cols=66 Identities=44% Similarity=0.615 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHH
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL 68 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L 68 (460)
+|+.|+||||++++..|.|.+. ..|+.|.+.|++.|.|+|..+..| .|.+||+|++.||+.+|..|
T Consensus 2 p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 2 PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEG-EGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred hHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHhC
Confidence 7899999999998888999996 678889999999999999666666 58999999999999999764
No 18
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.18 E-value=7.3e-11 Score=91.06 Aligned_cols=66 Identities=33% Similarity=0.514 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCC-CceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHH
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHA-PRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL 68 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~-p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L 68 (460)
||+.|+|||++.++.++.|.+...+++|. +.|.++|.|+|..++.| .|.+||+|++.||..+|..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEG-EGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEe-ccCCHHHHHHHHHHHHHHhC
Confidence 68999999999998776666666666555 89999999999999877 58999999999999999876
No 19
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.16 E-value=8e-11 Score=111.45 Aligned_cols=67 Identities=27% Similarity=0.390 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||+.+..+ .|.+...|++|.+.|++.|.|+|..|+.| .|.|||+||+.||+.+|..|..
T Consensus 111 pKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 111 PCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred hhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 6799999999988664 44444789999999999999999999988 6999999999999999999865
No 20
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.16 E-value=3e-10 Score=121.75 Aligned_cols=197 Identities=29% Similarity=0.397 Sum_probs=139.6
Q ss_pred CceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCC-----------ccccc-----
Q 012622 18 PSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSR-----------SLTAR----- 80 (460)
Q Consensus 18 PeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~-----------~l~d~----- 80 (460)
..|..+ ..||.|.+.|...|.|+|..|. +|.|+..||+.+++.+....+.. ++...
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 567766 7899999999999999998765 89999999999999988753220 11000
Q ss_pred c--ccccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCC
Q 012622 81 V--LDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157 (460)
Q Consensus 81 ~--kD~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~ 157 (460)
. .....||++.|.|+++ -+.|+++ +.|+.|.+.|.|.|.|+|..|.+| |.|||+|+++||+.||+.|....
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 0 1236799999999999 4678888 889999999999999999999888 99999999999999999998765
Q ss_pred CCCCCCCCC--CCCCchhhHHHHHHHHHhhhccccccchhhhhhcc------c---cccceeeeccCCCCCCCCccccCC
Q 012622 158 NLDSLTNKE--TDKPEEQDQAIVARVLSNFRAKDDNRNNNARRRDQ------S---QARRRVVCRSHRDNCSAASSTSGN 226 (460)
Q Consensus 158 ~~~s~~~~~--~~~~~~~eq~~va~~L~~~~~k~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~ 226 (460)
.......+. .+.........-..+++.|..=.++..+.-+++-- + -.=.+|+|.|-+-||-+.+..+.|
T Consensus 157 ~~~~~~~~~~~~e~~~~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~ 236 (542)
T KOG2777|consen 157 ENPERPSEALTLENPSTLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPN 236 (542)
T ss_pred CCcccccccccccCCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCC
Confidence 543222111 13334444455566777775555555554443211 1 112256766666677666666644
Q ss_pred c
Q 012622 227 S 227 (460)
Q Consensus 227 ~ 227 (460)
-
T Consensus 237 G 237 (542)
T KOG2777|consen 237 G 237 (542)
T ss_pred C
Confidence 4
No 21
>PRK12371 ribonuclease III; Reviewed
Probab=99.10 E-value=2.1e-10 Score=111.74 Aligned_cols=68 Identities=37% Similarity=0.421 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||+.+...|.|.++ ..||+|.+.|++.|.|+|..++.| .|.|||+||+.||+.+|..+..
T Consensus 163 ~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 163 AKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETG-EGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHhhh
Confidence 7999999999988888999988 679999999999999999988877 6999999999999999988754
No 22
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=98.98 E-value=1.2e-09 Score=106.95 Aligned_cols=69 Identities=36% Similarity=0.510 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||..+..+|.|.++ .+|++|++.|++.|.|+|..++.| .|.|||+|||.||+.+|..|...
T Consensus 163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G-~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred hhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEe-cccCHHHHHHHHHHHHHHHhccc
Confidence 7999999999999999999999 669999999999999999888888 69999999999999999988653
No 23
>PRK14718 ribonuclease III; Provisional
Probab=98.95 E-value=1.7e-09 Score=113.94 Aligned_cols=69 Identities=30% Similarity=0.349 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceee-ecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIF-ESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vf-EsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++.+|+|.++ +.|++|++.|++.|.|+|..+ +.| .|.|||+|||.||+.+|..|...
T Consensus 153 yKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G-~G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSG-SGASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEE-EcCCHHHHHHHHHHHHHHHhccc
Confidence 7999999999999999999998 679999999999999999544 555 69999999999999999999743
No 24
>PRK12372 ribonuclease III; Reviewed
Probab=98.90 E-value=3.6e-09 Score=110.60 Aligned_cols=69 Identities=30% Similarity=0.337 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceee-ecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIF-ESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vf-EsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++.+|+|.++ ..|++|++.|++.|.|+|..+ ..| .|.|||+||+.||+.+|..|...
T Consensus 153 ~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G-~G~SKKeAEQ~AAr~AL~kL~~~ 223 (413)
T PRK12372 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSG-SGASRRAAEQAAAKKALDEVMAA 223 (413)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEE-EeCCHHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999988 779999999999999998544 455 69999999999999999999853
No 25
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.87 E-value=6e-09 Score=86.41 Aligned_cols=68 Identities=29% Similarity=0.427 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeee---------cccchhhhHHHHHHHHHHHHHHHh
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFE---------SPSYCTTLRQAEHAAAEVALNVLS 69 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfE---------sG~gG~SKKqAEq~AAr~aL~~L~ 69 (460)
.++.|+|+|++++|+-|.|.+. +.||+|...|.++|.|.+..+. ......++|+|+..||+.+|..|.
T Consensus 3 a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 3 AVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999997 7899999999999999887663 223468999999999999998873
No 26
>PRK00102 rnc ribonuclease III; Reviewed
Probab=98.82 E-value=1.2e-08 Score=97.04 Aligned_cols=68 Identities=38% Similarity=0.571 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
+|+.|+||||+.++..|.|.++ ..|+.|.+.|++.|.++|..++.| .|.+||.|++.||+.++..|..
T Consensus 160 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999888999987 579999999999999999988887 6899999999999999998864
No 27
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.75 E-value=9.5e-09 Score=107.59 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=109.0
Q ss_pred HHHHHHcCCCCCceEEEeeCCCCCCceE-EEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCcccccccccc
Q 012622 7 QELAQRSCFNLPSYTCIREGPDHAPRFK-ASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVLDET 85 (460)
Q Consensus 7 QElcQK~gl~LPeY~lleeGP~H~p~Ft-v~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~kD~~ 85 (460)
..||...| .++|.+..-.. . .|. -+.++..+.||+.++|.+.|.+...+..++-..+..++.+... ....
T Consensus 356 akva~~lg--f~e~li~n~~~--k-~~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Prl~~fi~----nq~w 426 (533)
T KOG1817|consen 356 AKVADDLG--FHEYLITNFDL--K-DFQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPRLKEFIR----NQDW 426 (533)
T ss_pred HHHHHHhC--CchhhhhCcch--h-hhhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHH----hhhc
Confidence 45777755 56777662111 0 111 1234456789999999999999999999998888876544321 1236
Q ss_pred CChhHHHHHHHHHcCC------CCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 86 GIYKNLLQETAHRAGL------NLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~l------~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
.++|++||.+|..... .+|.|.+. ..||.+.+.|++.|+++|+.++.|.|.+.|+|+..||+.||+.+..
T Consensus 427 ndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 427 NDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred cCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 6899999999998753 46888888 7799999999999999999999999999999999999999999985
No 28
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.73 E-value=3.2e-08 Score=93.41 Aligned_cols=66 Identities=42% Similarity=0.595 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHH
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVL 68 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L 68 (460)
+|+.|+||||++++..|.|.++ ..|+.|.+.|.+.|.++|+.++.| .|.+||.|++.||+.++..|
T Consensus 154 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g-~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred hHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHhC
Confidence 6899999999988888999988 568899999999999999998887 58999999999999999764
No 29
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.47 E-value=8.1e-07 Score=94.42 Aligned_cols=155 Identities=18% Similarity=0.145 Sum_probs=106.7
Q ss_pred CcHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCc----
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRS---- 76 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~---- 76 (460)
|..-.|+||+|+.-..+|.|++.+.- ...-.|.+.|.+++..|++| .|.+||.|+..||+..|..|........
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~ 453 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVC 453 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccc-cccchHHHHHHHHHHHHHHhcchhhhcccccc
Confidence 34558999999987789999877332 34557999999999999998 6999999999999999999886532110
Q ss_pred ---cc------------cc--ccc----------ccCChhHHHHHHHHHcC-CCC--CeEEeeccCCCCCCeEEEEEEEC
Q 012622 77 ---LT------------AR--VLD----------ETGIYKNLLQETAHRAG-LNL--PVYTTVRSGPGHVPIFTCTVELA 126 (460)
Q Consensus 77 ---l~------------d~--~kD----------~~~NyKS~LQE~cQK~~-l~l--P~YevvesGP~H~p~Ft~tV~V~ 126 (460)
.. +. +.| ....|-+.|.+..+++. |.- -.++++..| .....|++.|
T Consensus 454 d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~-nqkse~im~~--- 529 (650)
T KOG4334|consen 454 DGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNG-NQKSEVIMIL--- 529 (650)
T ss_pred cccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCC-CccceeEeee---
Confidence 00 00 111 12356677778777763 422 123333333 2334566555
Q ss_pred CEeecccccCCHHHHHHHHHHHHHHHHhc-CCCCCC
Q 012622 127 GMNFTGEPAKTKKQAEKNAAIAAWSALKR-MPNLDS 161 (460)
Q Consensus 127 G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~-~~~~~s 161 (460)
|..-..+++++|++++|.|.++.|+.|.- ...|++
T Consensus 530 Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGS 565 (650)
T KOG4334|consen 530 GKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGS 565 (650)
T ss_pred ccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHH
Confidence 44445689999999999999999999864 444554
No 30
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=4.2e-05 Score=77.68 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=66.3
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCC-CCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGP-GHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP-~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~ 157 (460)
..+|...|-++|+++++..|+|+++ ++|. .-.|.|.|.++-|.+.+|.|.|.|-|.|++.||+.||..|....
T Consensus 231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999999999 6664 56789999999999889999999999999999999999998765
No 31
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.54 E-value=7e-05 Score=80.08 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 88 YKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 88 yKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
..-.|+||+|+....+|.|++.+.. ...--|...|.+++..||.|.|.|||.|+..||+.+|+.|.-
T Consensus 377 ~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIP 443 (650)
T KOG4334|consen 377 KVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIP 443 (650)
T ss_pred eeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcc
Confidence 4568999999999999999987443 234579999999999999999999999999999999999954
No 32
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.19 E-value=0.00036 Score=79.31 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCC-------C
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP-------S 74 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p-------~ 74 (460)
-|..|..||-|+.+. |.|++..+|+....+|.|.|.+.+..+...+...+||.|+.+|+++..+.|...+. .
T Consensus 3 ~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 3 VKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred HHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 378899999999887 99999988888889999999999988877778899999999999999988765321 0
Q ss_pred C----------------------------------cccc-------------------------------cccc------
Q 012622 75 R----------------------------------SLTA-------------------------------RVLD------ 83 (460)
Q Consensus 75 ~----------------------------------~l~d-------------------------------~~kD------ 83 (460)
. ++.+ ...|
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih 161 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH 161 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence 0 0000 0001
Q ss_pred ---ccCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEEC-----CEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 84 ---ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELA-----GMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 84 ---~~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~-----G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
...|-|..|+++-|+... .-.|+....|++|.+.|+.+..+- -.....+.|++||.|+...|...+..|..
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~-~~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~h 240 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRI-QDNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLFH 240 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhh-ccccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHHH
Confidence 135889999999999998 457888888999999999887663 22235578999999999999998887766
Q ss_pred CCC
Q 012622 156 MPN 158 (460)
Q Consensus 156 ~~~ 158 (460)
..-
T Consensus 241 l~~ 243 (1282)
T KOG0921|consen 241 LNV 243 (1282)
T ss_pred Hhh
Confidence 443
No 33
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=96.87 E-value=0.0032 Score=67.10 Aligned_cols=69 Identities=28% Similarity=0.441 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHcCCC------CCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFN------LPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~------LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
+|+.||.+|..+... +|.|.+. ..|+.+++.|++.|.++|..++.+ .|.+.++|+..||..||+.+...
T Consensus 429 pkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~-~G~nik~Ae~rAA~~ALe~~~~d 504 (533)
T KOG1817|consen 429 PKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATG-VGSNIKQAEMRAAMQALENLKMD 504 (533)
T ss_pred cHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeec-cCchHhHHHHHHHHHHHHHHHhh
Confidence 588999999886543 5677777 678999999999999999999888 69999999999999999998763
No 34
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=96.86 E-value=0.0032 Score=68.60 Aligned_cols=65 Identities=34% Similarity=0.454 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCC
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP 73 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p 73 (460)
+.+.|+|+++ + +.|.++ ..|+.|.+.|.+.|.|||..|+.+ |.+||+|++.||..+|..|.....
T Consensus 92 pv~ll~e~~~--~---~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~--~~sKk~ak~~aa~~al~~l~~~~~ 157 (542)
T KOG2777|consen 92 PVSLLHELAN--G---LFFDFVNESGPQHAPKFVMSVVVDGRWFEGG--GRSKKEAKQEAAMAALQVLFKIDE 157 (542)
T ss_pred chHHHHHHhc--c---cceeeeccCCCCCCceEEEEEEECCEEccCC--CcchHHHHHHHHHHHHHHHHhccC
Confidence 3578999998 2 577777 779999999999999999999876 899999999999999999987543
No 35
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.53 E-value=0.0067 Score=51.31 Aligned_cols=69 Identities=29% Similarity=0.374 Sum_probs=46.6
Q ss_pred hHHHHHHHHHcCC-----CCCeEEeeccCCCCCCeEEEEEEECCE----eecccccCCHHHHHHHHHHHHHHHHhcCCCC
Q 012622 89 KNLLQETAHRAGL-----NLPVYTTVRSGPGHVPIFTCTVELAGM----NFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159 (460)
Q Consensus 89 KS~LQE~cQK~~l-----~lP~YevvesGP~H~p~Ft~tV~V~G~----~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~ 159 (460)
++.|+.||++..- ..|.|.+...+. .|.|+|.+-.. .+.+....+|+.||+.||-.|...|.+....
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~l 77 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGEL 77 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 5789999998642 458999885442 89999999542 1333367899999999999999999998877
Q ss_pred CC
Q 012622 160 DS 161 (460)
Q Consensus 160 ~s 161 (460)
++
T Consensus 78 dd 79 (90)
T PF03368_consen 78 DD 79 (90)
T ss_dssp TT
T ss_pred cc
Confidence 76
No 36
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.11 E-value=0.0049 Score=68.72 Aligned_cols=128 Identities=20% Similarity=0.133 Sum_probs=89.2
Q ss_pred EE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc----------CCC--C---------cccc
Q 012622 22 CI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR----------GPS--R---------SLTA 79 (460)
Q Consensus 22 ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~----------~p~--~---------~l~d 79 (460)
++ ..||.|.++|+.++.+++..+++- |.++|.|+-.||+..|...... ... . ...+
T Consensus 396 Lvv~t~P~~~~~~t~e~r~~~~~~~a~--gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~~~r~~as~d 473 (816)
T KOG3792|consen 396 LVVDTKPSHRPRRTMEVRVNGLPAEAE--GPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEPKGRRPASVD 473 (816)
T ss_pred ceeccCCcccchhhhhhhhcCCccccC--CcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCCCCcccCCCc
Confidence 44 789999999999999999998884 8999999999999988765310 000 0 0000
Q ss_pred ----------------ccc-------cccCChhHHHHHHHHHcCCCCCeEEee-ccC-CCCCCeEEEEEEECCEeecccc
Q 012622 80 ----------------RVL-------DETGIYKNLLQETAHRAGLNLPVYTTV-RSG-PGHVPIFTCTVELAGMNFTGEP 134 (460)
Q Consensus 80 ----------------~~k-------D~~~NyKS~LQE~cQK~~l~lP~Yevv-esG-P~H~p~Ft~tV~V~G~~fg~G~ 134 (460)
.+. +.+..-|...-|+..++.. -.|++. +.| -.|.++|+..|.+.|+.+ .|.
T Consensus 474 dr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek~rg--~k~El~set~~gs~~~R~v~gV~rvG~~a-kG~ 550 (816)
T KOG3792|consen 474 DRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEKRRG--DKYELPSETGTGSHDKRFVKGVMRVGILA-KGL 550 (816)
T ss_pred chhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhhccc--cceecccccCCCCCCceeeeeeeeeehhh-ccc
Confidence 000 0011222223344444332 368887 555 789999999999999976 479
Q ss_pred cCCHHHHHHHHHHHHHHHHh
Q 012622 135 AKTKKQAEKNAAIAAWSALK 154 (460)
Q Consensus 135 G~SKKeAEQ~AAk~AL~~L~ 154 (460)
+.+++.|+..||..|++.+.
T Consensus 551 ~~~gd~a~~~a~Lca~~pt~ 570 (816)
T KOG3792|consen 551 LLNGDRAVELALLCAEKPTS 570 (816)
T ss_pred cccchHHHHHHHHhccCccc
Confidence 99999999999888876553
No 37
>PF14954 LIX1: Limb expression 1
Probab=95.15 E-value=0.096 Score=51.79 Aligned_cols=95 Identities=26% Similarity=0.266 Sum_probs=61.4
Q ss_pred cCChhHHHHHHHHHc---CC-----CCCeEEeeccCCCCCCeEEEEEEECCE-eecc-cccCCHHHHHHHHHHHHHHH-H
Q 012622 85 TGIYKNLLQETAHRA---GL-----NLPVYTTVRSGPGHVPIFTCTVELAGM-NFTG-EPAKTKKQAEKNAAIAAWSA-L 153 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~---~l-----~lP~YevvesGP~H~p~Ft~tV~V~G~-~fg~-G~G~SKKeAEQ~AAk~AL~~-L 153 (460)
..|-+..|||+=|.+ +. .+..|+ +.|...|-|+|-|++-|- -||. -.+.||-+|+++||+.||.. +
T Consensus 20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YE---s~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSv 96 (252)
T PF14954_consen 20 DVNVVEALQEFWQMKQSRGADLKSEALVVYE---SVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSV 96 (252)
T ss_pred cchHHHHHHHHHHHHHhccccCCCCCeeeee---ccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHH
Confidence 457889999987654 22 344555 445566789999999654 4554 46899999999999999952 3
Q ss_pred hcCCCCCCCCCCCCCCCchhhHHHHHHHHHhhhccc
Q 012622 154 KRMPNLDSLTNKETDKPEEQDQAIVARVLSNFRAKD 189 (460)
Q Consensus 154 ~~~~~~~s~~~~~~~~~~~~eq~~va~~L~~~~~k~ 189 (460)
-+.....-. ..++++ .+|..+.+.+.++.
T Consensus 97 fNEhPsRrI------t~eFi~-ksv~eA~~s~~~~~ 125 (252)
T PF14954_consen 97 FNEHPSRRI------TDEFIE-KSVQEAVASFSGKL 125 (252)
T ss_pred HhcCCcccc------cHHHHH-HHHHHHHHhcCCCc
Confidence 322222211 344555 45566666665543
No 38
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.23 E-value=0.058 Score=62.20 Aligned_cols=69 Identities=26% Similarity=0.301 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeec-ccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFT-GEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 87 NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg-~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
|-|..|..||-++... |.|++..+|+.....|.|.|.+.+..+. .|...+||.|+++||+...+.|...
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~ 71 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVRE 71 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhh
Confidence 5688999999999988 9999998888888999999999998764 4677899999999999999999653
No 39
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=0.079 Score=54.51 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeC-CCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccC
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REG-PDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG 72 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeG-P~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~ 72 (460)
+...|-++|+++|+.-|++.++ +.| ....|.|.+.+.-+.+.++.| .|.+.+.|++.||.++|..|-..-
T Consensus 234 P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG-~Gesl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 234 PRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQG-QGESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred hHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccC-cchHHHHHHHHHHHHHHHHHHcCC
Confidence 3568999999999999999998 445 345689999999888888888 699999999999999998887654
No 40
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.33 E-value=0.091 Score=56.26 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=61.3
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeeccccc-CCHHHHHHHHHHHHHHHHhcCCCC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNAAIAAWSALKRMPNL 159 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G-~SKKeAEQ~AAk~AL~~L~~~~~~ 159 (460)
...+|..|.+||-+.+...|.|++++. -++.|...+.++|..|..+.+ ++||.|+|.||..+|.........
T Consensus 374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e~~ 446 (477)
T KOG2334|consen 374 WDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWEAD 446 (477)
T ss_pred CCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcchhh
Confidence 356999999999999999999999842 357899999999999977654 899999999999999888765443
No 41
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=79.00 E-value=5.8 Score=33.53 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCC-----CCceEEEeeCCCCCCceEEEEEECce----eeecccchhhhHHHHHHHHHHHHHHHhccC
Q 012622 3 KNQLQELAQRSCFN-----LPSYTCIREGPDHAPRFKASVNFNGE----IFESPSYCTTLRQAEHAAAEVALNVLSTRG 72 (460)
Q Consensus 3 KS~LQElcQK~gl~-----LPeY~lleeGP~H~p~Ftv~V~IdG~----vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~ 72 (460)
.+.|+.||+...-+ .|.|.+...+. .|.|+|.+-.. .+.+. ...+|+.|+..||-.+...|.+.+
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHcC
Confidence 57899999995432 36788775543 89999887421 12222 468999999999999999988754
No 42
>PF14954 LIX1: Limb expression 1
Probab=77.11 E-value=6.5 Score=39.32 Aligned_cols=73 Identities=30% Similarity=0.413 Sum_probs=51.9
Q ss_pred HHHHHHHHH---cCCCCCceEEE--eeCCCCCCceEEEEEE-CceeeecccchhhhHHHHHHHHHHHH-HHHhccCCCCc
Q 012622 4 NQLQELAQR---SCFNLPSYTCI--REGPDHAPRFKASVNF-NGEIFESPSYCTTLRQAEHAAAEVAL-NVLSTRGPSRS 76 (460)
Q Consensus 4 S~LQElcQK---~gl~LPeY~ll--eeGP~H~p~Ftv~V~I-dG~vfEsG~gG~SKKqAEq~AAr~aL-~~L~~~~p~~~ 76 (460)
..||||=|. .|..++.-.++ +..|...+.|.|=|++ +|-.|+....+.+|.+|...||+++| +.+....|...
T Consensus 25 ~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfNEhPsRr 104 (252)
T PF14954_consen 25 EALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFNEHPSRR 104 (252)
T ss_pred HHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHhcCCccc
Confidence 467876544 34444433332 5667778899999998 56678888888999999999999997 44655555543
No 43
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=71.76 E-value=0.27 Score=43.63 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
+..|.+++++.| +..|.....|..+. .....-+|-++.||+.++|++.+.+.+.|.+++.+.|...
T Consensus 62 ~~~La~~a~~lg--L~~~i~~~~~~~~~-~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~i~~~ 127 (128)
T PF14622_consen 62 NETLAEIAKQLG--LDKLIRWGPGEEKS-GGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKLILPR 127 (128)
T ss_dssp HHHHHHHHHHTT--CGGC-B--HHHHHT-TGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---
T ss_pred hHHHHHHHHHCC--HHHHHHhCccHhhc-CCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHHhccc
Confidence 567999999966 67777773321111 1111234567789999999999999999999999887653
No 44
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=65.89 E-value=2.3 Score=45.97 Aligned_cols=66 Identities=24% Similarity=0.296 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
.|..|..||.+.+..-|.|++... -+..|...+.+.|..|.+.++..++|.|+|.||..+|.....
T Consensus 377 ~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l 442 (477)
T KOG2334|consen 377 PKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNL 442 (477)
T ss_pred HHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCc
Confidence 578999999998888889998843 356899999999999999999999999999999999877543
No 45
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=51.83 E-value=7.9 Score=44.28 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=43.7
Q ss_pred CeEE------ee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHH
Q 012622 104 PVYT------TV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153 (460)
Q Consensus 104 P~Ye------vv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L 153 (460)
..|+ ++ ..||.|.++|+++|.++|..+. ..|.+||.|+-.||++-|+..
T Consensus 386 LQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~-a~gps~~~~~wh~~~k~lq~~ 441 (816)
T KOG3792|consen 386 LQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAE-AEGPSKKTAKWHAARKRLQNE 441 (816)
T ss_pred ceeccccCCCceeccCCcccchhhhhhhhcCCccc-cCCcccccchHHHHHHHhhcc
Confidence 4688 55 8899999999999999999875 479999999999999999877
No 46
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.11 E-value=33 Score=34.64 Aligned_cols=22 Identities=50% Similarity=0.847 Sum_probs=16.8
Q ss_pred cceecCCCCCCCCCccccCCccc
Q 012622 254 SYVSLVPPPPPRSTSKILPPITS 276 (460)
Q Consensus 254 ~~~~~~~~pp~~~~s~~~~~~~~ 276 (460)
.-.+|+||||.. |++||||=-|
T Consensus 182 ~gl~llPPPpgg-t~~ilPPP~p 203 (253)
T KOG2500|consen 182 GGLGLLPPPPGG-TSIILPPPPP 203 (253)
T ss_pred CcccccCCCCCC-cccccCCCCC
Confidence 566888887766 9999988633
No 47
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=38.12 E-value=4.8e+02 Score=30.52 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCE----eecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 87 IYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGM----NFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 87 NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~----~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
+-+.++++.....++.+- +.+|-..-+.| ++|.+.+. .+..|.|.||++|+..|-....+.|..
T Consensus 160 eTI~~~~~~L~~lg~~i~----~~s~~~~vp~~-~Sv~~~d~~~~~~~tnGKGas~~~AlASAlgE~~ERls~ 227 (718)
T TIGR03549 160 QTIANMTAILADLGMKIE----IASWRNIVPNV-WSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNC 227 (718)
T ss_pred HHHHHHHHHHHHcCCCeE----EeeccCCCCcE-EEEEecccCCCcccCCCCcCCHHHHHHHHHHHHHHHHhh
Confidence 456777777777776542 23343333332 23334332 256799999999999999999999954
No 48
>smart00535 RIBOc Ribonuclease III family.
Probab=34.94 E-value=8.2 Score=33.29 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
...|.+++.+.+ +..|.....+.... .......+-++.||+.++|.+.+.+...|.+++.+.+.+.
T Consensus 60 n~~la~~a~~~~--l~~~i~~~~~~~~~-~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~~~ 125 (129)
T smart00535 60 NETLARLAKKLG--LGEFIRLGRGEAIS-GGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLGPR 125 (129)
T ss_pred HHHHHHHHHHCC--cHHHHccCchHhhc-CCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356888999965 56666653322111 1122345667789999999999999999999988887653
No 49
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=30.82 E-value=57 Score=26.54 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=22.8
Q ss_pred eecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 129 NFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 129 ~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
.++.|.|.+.+.|+++|-..+.+.|...
T Consensus 14 l~a~G~~~~~~~A~~~A~~~la~~i~~~ 41 (92)
T PF02169_consen 14 LYAVGSGSSREQAKQDALANLAEQISVV 41 (92)
T ss_pred EEEEEcccChHHHHHHHHHHHHHheeEE
Confidence 4677999999999999888888877554
No 50
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=26.26 E-value=72 Score=40.06 Aligned_cols=72 Identities=18% Similarity=0.091 Sum_probs=53.8
Q ss_pred ChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEE--------------EEEECCEeecccccCCHHHHHHHHHHHHHH
Q 012622 87 IYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTC--------------TVELAGMNFTGEPAKTKKQAEKNAAIAAWS 151 (460)
Q Consensus 87 NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~--------------tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~ 151 (460)
..++.+.+.|-...|+.|-+..+ +.++.|..+|.. +|.+.+.....|.|...+.||..||+.|++
T Consensus 1515 ~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A~~ 1594 (1606)
T KOG0701|consen 1515 LDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAALK 1594 (1606)
T ss_pred cCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHHHH
Confidence 35568899999999999999998 667777665543 333344444457899999999999999998
Q ss_pred HHhcCCC
Q 012622 152 ALKRMPN 158 (460)
Q Consensus 152 ~L~~~~~ 158 (460)
.|.....
T Consensus 1595 ll~~~~~ 1601 (1606)
T KOG0701|consen 1595 LLKKLGL 1601 (1606)
T ss_pred HHHHhhh
Confidence 8876543
No 51
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=24.91 E-value=2.1e+02 Score=21.11 Aligned_cols=22 Identities=41% Similarity=0.281 Sum_probs=14.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHh
Q 012622 132 GEPAKTKKQAEKNAAIAAWSALK 154 (460)
Q Consensus 132 ~G~G~SKKeAEQ~AAk~AL~~L~ 154 (460)
..-..+|++|+..+++ ++..|.
T Consensus 21 k~GF~TkkeA~~~~~~-~~~~~~ 42 (46)
T PF14657_consen 21 KRGFKTKKEAEKALAK-IEAELE 42 (46)
T ss_pred cCCCCcHHHHHHHHHH-HHHHHH
Confidence 3446899999996666 444443
No 52
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=20.74 E-value=21 Score=30.66 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
...|.+++.+.| +..|......... .......++-++.||+.+|+.+.+.+...|.+++...+...
T Consensus 62 n~~l~~~a~~~g--l~~~i~~~~~~~~-~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~ 127 (133)
T cd00593 62 NETLARLARELG--LGKYLRLGKGEEK-SGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGPL 127 (133)
T ss_pred HHHHHHHHHHcC--cHHHhccCchHhh-cCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356888999955 5566655222111 11233455667789999999999999988877777665543
Done!