Query 012622
Match_columns 460
No_of_seqs 248 out of 1734
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 5.2E-30 1.8E-34 235.9 16.2 156 1-159 14-176 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 99.9 4.4E-26 1.5E-30 218.6 14.5 149 1-156 23-199 (232)
3 2l3j_A Double-stranded RNA-spe 99.9 1.6E-23 5.6E-28 200.9 19.6 146 1-156 5-226 (236)
4 3adg_A F21M12.9 protein; HYL1, 99.8 1.9E-19 6.4E-24 143.8 10.5 69 86-154 3-72 (73)
5 3adj_A F21M12.9 protein; HYL1, 99.8 1.8E-19 6E-24 145.3 9.2 70 86-155 4-74 (76)
6 1di2_A XLRBPA, double stranded 99.8 5E-19 1.7E-23 139.7 8.5 68 87-155 1-69 (69)
7 3adl_A RISC-loading complex su 99.8 8.6E-19 2.9E-23 145.8 9.9 73 84-157 13-86 (88)
8 2cpn_A TAR RNA-binding protein 99.8 1.2E-18 4.1E-23 145.1 10.1 71 85-156 15-86 (89)
9 1uhz_A Staufen (RNA binding pr 99.8 2.3E-18 7.9E-23 143.4 9.7 70 85-155 5-75 (89)
10 2dix_A Interferon-inducible do 99.8 3E-18 1E-22 141.0 10.2 72 85-158 7-79 (84)
11 2khx_A Ribonuclease 3; drosha, 99.8 1E-18 3.5E-23 144.4 7.2 70 86-155 1-76 (85)
12 1x49_A Interferon-induced, dou 99.7 3.4E-18 1.2E-22 144.6 9.8 76 84-160 12-88 (97)
13 2l2n_A Hyponastic leave 1; DSR 99.7 2.6E-18 8.9E-23 146.6 9.1 80 84-163 15-95 (103)
14 1qu6_A Protein kinase PKR; dsR 99.7 1.2E-18 4.2E-23 160.1 7.5 135 85-221 12-152 (179)
15 1ekz_A DSRBDIII, maternal effe 99.7 8.3E-19 2.8E-23 141.0 5.3 69 85-155 6-75 (76)
16 2b7t_A Double-stranded RNA-spe 99.7 5.7E-18 2E-22 135.3 9.0 68 86-156 4-72 (73)
17 1x48_A Interferon-induced, dou 99.7 9.4E-18 3.2E-22 139.3 10.2 79 85-165 5-84 (88)
18 3llh_A RISC-loading complex su 99.7 5.3E-18 1.8E-22 141.1 8.5 75 84-160 12-87 (90)
19 2nug_A Ribonuclease III, RNAse 99.7 8.6E-19 2.9E-23 165.3 1.6 138 3-154 77-218 (221)
20 1whq_A RNA helicase A; double- 99.7 9.8E-18 3.3E-22 142.3 7.5 73 85-158 5-78 (99)
21 3n3w_A Ribonuclease III; nucle 99.7 2.4E-19 8.3E-24 173.0 -6.1 146 3-155 101-247 (248)
22 1x47_A DGCR8 protein; structur 99.7 1.2E-16 3.9E-21 135.3 10.9 71 84-156 14-85 (98)
23 2dmy_A Spermatid perinuclear R 99.7 7.2E-17 2.5E-21 136.2 9.4 70 84-156 14-84 (97)
24 1t4n_A Ribonuclease III; DSRBD 99.7 2E-17 6.8E-22 139.9 5.3 70 85-155 5-75 (94)
25 1uil_A Double-stranded RNA-bin 99.7 8.7E-17 3E-21 139.4 9.4 74 86-160 26-104 (113)
26 1o0w_A Ribonuclease III, RNAse 99.7 3.8E-17 1.3E-21 157.3 6.0 147 3-156 103-250 (252)
27 2l33_A Interleukin enhancer-bi 99.7 1.4E-16 4.8E-21 133.7 8.4 69 85-156 13-82 (91)
28 1t4o_A Ribonuclease III; RNT1P 99.6 1E-16 3.4E-21 140.5 6.0 70 85-155 7-77 (117)
29 1whn_A Hypothetical protein ri 99.6 4.7E-16 1.6E-20 137.9 9.1 70 85-156 25-95 (128)
30 2a11_A Ribonuclease III, RNAse 99.6 1.3E-18 4.6E-23 166.0 -8.5 150 3-157 83-233 (242)
31 2ljh_A Double-stranded RNA-spe 99.6 5.1E-16 1.8E-20 135.3 8.1 69 85-159 36-105 (114)
32 1di2_A XLRBPA, double stranded 99.6 9.5E-16 3.2E-20 120.9 8.0 67 1-69 1-68 (69)
33 3adg_A F21M12.9 protein; HYL1, 99.6 3.5E-15 1.2E-19 119.0 9.4 68 1-69 4-72 (73)
34 2b7v_A Double-stranded RNA-spe 99.6 3E-15 1E-19 118.8 8.3 65 85-155 3-68 (71)
35 3adj_A F21M12.9 protein; HYL1, 99.6 5.3E-15 1.8E-19 119.1 8.9 68 2-70 6-74 (76)
36 3p1x_A Interleukin enhancer-bi 99.5 1.6E-14 5.5E-19 116.4 8.2 66 88-156 6-72 (75)
37 3adl_A RISC-loading complex su 99.5 3.1E-14 1.1E-18 118.3 9.0 68 2-71 17-85 (88)
38 2cpn_A TAR RNA-binding protein 99.5 4.3E-14 1.5E-18 117.6 8.7 67 2-70 18-85 (89)
39 1uhz_A Staufen (RNA binding pr 99.5 5.3E-14 1.8E-18 117.1 8.8 68 1-70 7-75 (89)
40 2l2n_A Hyponastic leave 1; DSR 99.5 6.2E-14 2.1E-18 119.5 8.9 70 1-71 18-88 (103)
41 2khx_A Ribonuclease 3; drosha, 99.5 3.6E-14 1.2E-18 117.2 6.6 68 2-70 3-76 (85)
42 3rv0_A K. polysporus DCR1; RNA 99.5 6.2E-16 2.1E-20 156.1 -4.9 147 3-156 170-321 (341)
43 2yt4_A Protein DGCR8; DSRBD, R 99.5 9.4E-14 3.2E-18 133.1 9.3 70 85-156 21-91 (232)
44 2dix_A Interferon-inducible do 99.5 1.2E-13 4E-18 113.6 8.5 67 2-71 10-77 (84)
45 1ekz_A DSRBDIII, maternal effe 99.4 3.9E-14 1.3E-18 113.7 4.4 66 2-70 9-75 (76)
46 1x49_A Interferon-induced, dou 99.4 1.3E-13 4.5E-18 116.4 7.6 68 2-71 16-84 (97)
47 2b7t_A Double-stranded RNA-spe 99.4 2.2E-13 7.4E-18 108.7 8.2 65 2-70 6-71 (73)
48 1whq_A RNA helicase A; double- 99.4 2.6E-13 8.9E-18 115.1 7.3 68 2-71 8-76 (99)
49 3llh_A RISC-loading complex su 99.4 3.5E-13 1.2E-17 112.0 7.8 67 2-71 16-83 (90)
50 1x48_A Interferon-induced, dou 99.4 5.8E-13 2E-17 110.5 8.2 67 2-71 8-75 (88)
51 1uil_A Double-stranded RNA-bin 99.4 1E-12 3.6E-17 113.8 9.0 68 2-71 28-100 (113)
52 2l33_A Interleukin enhancer-bi 99.4 7.3E-13 2.5E-17 111.1 7.3 69 1-73 15-84 (91)
53 2dmy_A Spermatid perinuclear R 99.4 1.1E-12 3.7E-17 110.7 8.3 65 2-70 18-83 (97)
54 1t4n_A Ribonuclease III; DSRBD 99.4 3.3E-13 1.1E-17 114.1 5.1 66 2-69 8-74 (94)
55 1x47_A DGCR8 protein; structur 99.4 1.4E-12 4.9E-17 110.2 8.5 67 2-71 18-85 (98)
56 1whn_A Hypothetical protein ri 99.3 2.5E-12 8.5E-17 114.0 8.3 66 2-70 28-94 (128)
57 1t4o_A Ribonuclease III; RNT1P 99.3 1.1E-12 3.6E-17 115.0 5.4 66 2-69 10-76 (117)
58 2l3j_A Double-stranded RNA-spe 99.3 1.1E-11 3.7E-16 118.9 9.1 69 86-157 4-73 (236)
59 2ljh_A Double-stranded RNA-spe 99.2 7E-12 2.4E-16 109.2 6.0 63 2-71 39-102 (114)
60 2b7v_A Double-stranded RNA-spe 99.2 5.9E-11 2E-15 94.0 7.4 62 2-70 6-68 (71)
61 3p1x_A Interleukin enhancer-bi 99.2 6.8E-11 2.3E-15 95.1 7.8 66 3-72 7-73 (75)
62 2nug_A Ribonuclease III, RNAse 99.1 8.1E-11 2.8E-15 110.8 6.8 66 2-69 152-218 (221)
63 1o0w_A Ribonuclease III, RNAse 99.1 1.2E-10 4.2E-15 112.0 7.8 68 2-70 181-249 (252)
64 3c4b_A Endoribonuclease dicer; 99.0 2.9E-11 1E-15 116.4 1.2 107 38-155 155-263 (265)
65 3n3w_A Ribonuclease III; nucle 98.9 1.1E-10 3.7E-15 112.7 0.0 68 2-70 179-247 (248)
66 2a11_A Ribonuclease III, RNAse 98.9 1.2E-10 4E-15 111.1 0.0 69 2-71 164-232 (242)
67 3rv0_A K. polysporus DCR1; RNA 98.3 1E-07 3.4E-12 96.4 0.0 63 2-70 256-320 (341)
68 3c4b_A Endoribonuclease dicer; 97.7 2.6E-05 9E-10 74.9 5.8 65 2-70 199-263 (265)
69 2qvw_A GLP_546_48378_50642; di 96.1 0.00078 2.7E-08 74.5 -0.4 114 3-157 375-499 (756)
70 2kou_A Dicer-like protein 4; A 95.4 0.027 9.3E-07 47.7 6.4 75 86-162 4-87 (102)
71 3htx_A HEN1; HEN1, small RNA m 93.9 0.051 1.8E-06 61.4 5.4 76 85-164 16-104 (950)
72 2db2_A KIAA0890 protein; DSRM 86.0 0.78 2.7E-05 40.1 4.5 73 84-161 15-95 (119)
73 2kou_A Dicer-like protein 4; A 56.3 25 0.00085 29.4 6.4 68 2-72 6-82 (102)
74 3o2r_A Ribonuclease III; struc 42.6 0.69 2.4E-05 42.1 -5.8 68 3-73 101-168 (170)
75 3htx_A HEN1; HEN1, small RNA m 31.8 46 0.0016 38.0 5.3 38 32-70 58-95 (950)
76 3rv1_A K. polysporus DCR1; RNA 21.5 9 0.00031 37.0 -2.4 67 3-71 170-239 (246)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.97 E-value=5.2e-30 Score=235.88 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=134.2
Q ss_pred CcHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCcc--
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSL-- 77 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l-- 77 (460)
.||+.||||||++++. |.|.++ +.||+|++.|++.|.|+|..++.| .|.+||.|++.||+.+|..|.........
T Consensus 14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~ 91 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91 (179)
T ss_dssp SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec-CCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 3799999999999986 899988 689999999999999999888777 68999999999999999999865321110
Q ss_pred ---cccccc-ccCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHH
Q 012622 78 ---TARVLD-ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153 (460)
Q Consensus 78 ---~d~~kD-~~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L 153 (460)
.+...+ ...||++.||||||++++.+ .|++.++|++|.+.|+|+|.|+|..|+.|.|.|||+||++||+.||..|
T Consensus 92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L 170 (179)
T 1qu6_A 92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170 (179)
T ss_dssp CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHH
Confidence 000111 35699999999999999987 9998889999999999999999999889999999999999999999999
Q ss_pred hcCCCC
Q 012622 154 KRMPNL 159 (460)
Q Consensus 154 ~~~~~~ 159 (460)
......
T Consensus 171 ~~~~~~ 176 (179)
T 1qu6_A 171 LSEETG 176 (179)
T ss_dssp HHCCCC
T ss_pred hcccCc
Confidence 775443
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=4.4e-26 Score=218.59 Aligned_cols=149 Identities=19% Similarity=0.140 Sum_probs=119.8
Q ss_pred CcHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCC-Ccc-
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS-RSL- 77 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~-~~l- 77 (460)
.||+.||||||++++.+|.|.++ ..|++ +.|++.|.|+|..|+.| .|.+||.|++.||+.+|..|....+. ...
T Consensus 23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~ 99 (232)
T 2yt4_A 23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQTSEE 99 (232)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 37999999999999999999998 57887 89999999999988887 58999999999999999999875321 000
Q ss_pred ----------cc-------cc-----ccccCChhHHHHHHHHHcCCCCCeEE--ee-ccCCCCCCeEEEEEEECCEeecc
Q 012622 78 ----------TA-------RV-----LDETGIYKNLLQETAHRAGLNLPVYT--TV-RSGPGHVPIFTCTVELAGMNFTG 132 (460)
Q Consensus 78 ----------~d-------~~-----kD~~~NyKS~LQE~cQK~~l~lP~Ye--vv-esGP~H~p~Ft~tV~V~G~~fg~ 132 (460)
.+ .. .....|||+.||| ||++++.+|.|+ ++ +.||+|.+.|+|+|. + .++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-~~~~ 175 (232)
T 2yt4_A 100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-HTVR 175 (232)
T ss_dssp ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-EEEE
T ss_pred ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-EEEE
Confidence 00 00 0124589999999 999999999999 55 789999999999886 4 3567
Q ss_pred cccCCHHHHHHHHHHHHHHHHhcC
Q 012622 133 EPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 133 G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
|.|.|||+|||.||+.||..|...
T Consensus 176 G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 176 GWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSTT
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999753
No 3
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.91 E-value=1.6e-23 Score=200.93 Aligned_cols=146 Identities=28% Similarity=0.314 Sum_probs=121.0
Q ss_pred CcHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCC-----
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS----- 74 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~----- 74 (460)
.+|+.|++|++. +.+|.|.++ +.|++|++.|++.|.|+|..+ .| .|.|||.||+.||+.+|..|......
T Consensus 5 ~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EE-ecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 479999999987 468999998 689999999999999999886 44 68999999999999999998752100
Q ss_pred ---------Cccc-c--------------------------------------cc-------------c--------ccc
Q 012622 75 ---------RSLT-A--------------------------------------RV-------------L--------DET 85 (460)
Q Consensus 75 ---------~~l~-d--------------------------------------~~-------------k--------D~~ 85 (460)
.+.. + .+ . ...
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 0000 0 00 0 013
Q ss_pred CChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 86 GIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
.|||++|||| +..|.|+++ +.||+|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 5999999999 578999988 789999999999999999987 7999999999999999999999754
No 4
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.80 E-value=1.9e-19 Score=143.77 Aligned_cols=69 Identities=38% Similarity=0.584 Sum_probs=66.1
Q ss_pred CChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeeccccc-CCHHHHHHHHHHHHHHHHh
Q 012622 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNAAIAAWSALK 154 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G-~SKKeAEQ~AAk~AL~~L~ 154 (460)
.|||+.||||||++++.+|.|+++.+||+|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999999966999999999999999999999999 9999999999999999985
No 5
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.79 E-value=1.8e-19 Score=145.30 Aligned_cols=70 Identities=41% Similarity=0.662 Sum_probs=67.0
Q ss_pred CChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 86 GIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
.|||+.||||||++++.+|.|+++ ++||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999998 7899999999999999999999999999999999999999999974
No 6
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.77 E-value=5e-19 Score=139.72 Aligned_cols=68 Identities=31% Similarity=0.374 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 87 IYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 87 NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
.||+.||||||++++..|.|+++ ++||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|.+
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~~ 69 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHhC
Confidence 38999999999999999999998 7899999999999999998 89999999999999999999999863
No 7
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=145.84 Aligned_cols=73 Identities=30% Similarity=0.378 Sum_probs=67.2
Q ss_pred ccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCC
Q 012622 84 ETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~ 157 (460)
...|||+.||||||++++.+|.|+++ ++||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||+.|...+
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p 86 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVP 86 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence 35689999999999999999999998 7899999999999999998 8899999999999999999999998654
No 8
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.77 E-value=1.2e-18 Score=145.12 Aligned_cols=71 Identities=30% Similarity=0.315 Sum_probs=67.1
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
..|||+.||||||++++.+|.|+++ +.||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||+.|...
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999998 7899999999999999998 889999999999999999999999754
No 9
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.75 E-value=2.3e-18 Score=143.41 Aligned_cols=70 Identities=21% Similarity=0.133 Sum_probs=66.0
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
..|||+.||||||++++.+|.|+++ +.||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999998 7899999999999999997 88899999999999999999999964
No 10
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.75 E-value=3e-18 Score=140.98 Aligned_cols=72 Identities=29% Similarity=0.293 Sum_probs=66.6
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCCC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~ 158 (460)
..|||+.||||||+++ ..|.|+++ +.||+|.+.|+|.|.|+| .++.|.|+|||+|||+||+.||+.|.....
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 79 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANAS 79 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcccc
Confidence 4689999999999998 68999998 789999999999999999 888999999999999999999999986544
No 11
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=144.41 Aligned_cols=70 Identities=26% Similarity=0.334 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHH-----cCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 86 GIYKNLLQETAHR-----AGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 86 ~NyKS~LQE~cQK-----~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
.|||+.||||||+ +++.+|.|+++ ++||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||+.|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 3799999999998 46789999998 7899999999999999999999999999999999999999998854
No 12
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.75 E-value=3.4e-18 Score=144.55 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=69.7
Q ss_pred ccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 012622 84 ETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD 160 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~~ 160 (460)
...|||+.||||||++++. |.|+++ +.||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||+.|.......
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~ 88 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENKVD 88 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4568999999999999987 899987 789999999999999999999999999999999999999999998765554
No 13
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=2.6e-18 Score=146.57 Aligned_cols=80 Identities=34% Similarity=0.519 Sum_probs=67.5
Q ss_pred ccCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeeccccc-CCHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012622 84 ETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNAAIAAWSALKRMPNLDSL 162 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G-~SKKeAEQ~AAk~AL~~L~~~~~~~s~ 162 (460)
...|||+.||||||++++.+|.|+++..||+|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||+.|.......++
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~~~~~ 94 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSELSQC 94 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccccccc
Confidence 3568999999999999999999999966999999999999999999999999 999999999999999999976665554
Q ss_pred C
Q 012622 163 T 163 (460)
Q Consensus 163 ~ 163 (460)
.
T Consensus 95 ~ 95 (103)
T 2l2n_A 95 V 95 (103)
T ss_dssp -
T ss_pred c
Confidence 4
No 14
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.75 E-value=1.2e-18 Score=160.12 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=97.0
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLT 163 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~~s~~ 163 (460)
..|||+.||||||++++. |.|+++ +.||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||+.|..........
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~ 90 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPL 90 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSCS
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 368999999999999987 899998 789999999999999999989999999999999999999999998754422110
Q ss_pred C-CCCCCCchhhHHHHHHHHHhhhccccccchhhhhhccccccceee-eccCCC---CCCCCc
Q 012622 164 N-KETDKPEEQDQAIVARVLSNFRAKDDNRNNNARRRDQSQARRRVV-CRSHRD---NCSAAS 221 (460)
Q Consensus 164 ~-~~~~~~~~~eq~~va~~L~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~ 221 (460)
. ......+.....-..+.|+++.+|.+....|... +..+...+.| |.+..| |..|..
T Consensus 91 ~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~~Y~~~-~~G~~h~~~F~~~v~v~~~~~~~g~g 152 (179)
T 1qu6_A 91 LLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTG 152 (179)
T ss_dssp SCCCSCSSCCCCCCCCHHHHHHHHHHSCCEEEEEEE-EECSSSSSEEEEEEEEETTBCCEEEE
T ss_pred cCCCCCcccccCCCCHHHHHHHHHHhcCCcceEEec-CcCCCCCCeEEEEEEECCEEEeeEEE
Confidence 0 0001111222223478999999988766555433 3334444444 665554 555543
No 15
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.74 E-value=8.3e-19 Score=141.02 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=65.2
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
..|||+.||||||++++. |.|+++ ++||+|.+.|+|.|.|+| .++.|.|+|||+|||+||+.||..|..
T Consensus 6 ~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999 999998 789999999999999999 888999999999999999999999965
No 16
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.74 E-value=5.7e-18 Score=135.32 Aligned_cols=68 Identities=29% Similarity=0.375 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 86 GIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
.|||+.||||||+ +..|.|+++ ++||+|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|.+.
T Consensus 4 ~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence 5799999999996 788999998 789999999999999999887 7999999999999999999999864
No 17
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.73 E-value=9.4e-18 Score=139.34 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=70.5
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeeccCCCCCC-eEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVP-IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLDSLT 163 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p-~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~~s~~ 163 (460)
..|||+.||||||++++.+ .|+ .+.||+|.+ .|+|.|.|+|..++.|.|+|||+|||+||+.||+.|...+...+.+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~~~~ 82 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGT 82 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3589999999999999976 999 778999999 7999999999999999999999999999999999999876665544
Q ss_pred CC
Q 012622 164 NK 165 (460)
Q Consensus 164 ~~ 165 (460)
+.
T Consensus 83 ~~ 84 (88)
T 1x48_A 83 SG 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 18
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=141.11 Aligned_cols=75 Identities=32% Similarity=0.352 Sum_probs=58.7
Q ss_pred ccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 012622 84 ETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD 160 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~~ 160 (460)
...|||+.||||||+++. .|.|+++ ++||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||+.|.......
T Consensus 12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~ 87 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGSMLE 87 (90)
T ss_dssp -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC------
T ss_pred cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhccccc
Confidence 356899999999999874 7999997 7899999999999999998 6789999999999999999999998765443
No 19
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.71 E-value=8.6e-19 Score=165.25 Aligned_cols=138 Identities=22% Similarity=0.244 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHH--HHHHHHHHHhccCC-CCcccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHA--AAEVALNVLSTRGP-SRSLTA 79 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~--AAr~aL~~L~~~~p-~~~l~d 79 (460)
...|.++|.+.+ +..|...+.|... ..+-++.||+.+++++.+.+... |.+++...+...+. ....
T Consensus 77 ~~~la~~a~~l~--l~~~l~~~~~~~~-------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~~~~~~~-- 145 (221)
T 2nug_A 77 EEFFNLLAQKLE--LHKFIRIKRGKIN-------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKE-- 145 (221)
T ss_dssp HHHHHHHHHTTT--GGGTCBSCTTCCC-------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcC--hHHhhccCCCccc-------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhhhc--
Confidence 457889999955 6677766555432 34557789999889999998888 88887777655432 1110
Q ss_pred ccccccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHh
Q 012622 80 RVLDETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154 (460)
Q Consensus 80 ~~kD~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~ 154 (460)
.+...|||+.||||||++++..|.|+++ ++||+|.+.|+|.|.|+|. ++.|.|+|||+||+.||+.||+.|.
T Consensus 146 --~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 146 --GRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp --TCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred --cccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 1124689999999999999999999998 7899999999999999999 9999999999999999999999996
No 20
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.71 E-value=9.8e-18 Score=142.32 Aligned_cols=73 Identities=25% Similarity=0.244 Sum_probs=67.3
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECC-EeecccccCCHHHHHHHHHHHHHHHHhcCCC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAG-MNFTGEPAKTKKQAEKNAAIAAWSALKRMPN 158 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G-~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~ 158 (460)
..|||+.||||||++ +..|.|++.+.||+|.+.|+|.|.|+| ..++.|.|+|||+|||+||+.||+.|.....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 358999999999999 889999997789999999999999999 6889999999999999999999999986443
No 21
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.69 E-value=2.4e-19 Score=172.97 Aligned_cols=146 Identities=22% Similarity=0.223 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCccccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVL 82 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~k 82 (460)
...|.++|.+.| +..|.....|...... ...-.+-++.||+.++|++.+.+...|.+++...|...+..... .
T Consensus 101 ~~~La~~a~~lg--L~~~l~~~~~e~~~~g-~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~----~ 173 (248)
T 3n3w_A 101 EKSFAKIANSLN--LGDFILMSVAEENNGG-KEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDA----K 173 (248)
T ss_dssp HHHHHHHHHHTT--GGGTCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHcC--cHHHhhcCchhhhcCC-CCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhc----c
Confidence 457899999955 6788776433211100 01123556789999999999999999999998888877654331 1
Q ss_pred cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 83 D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
+...|||+.||||||++++..|.|+++ ++||+|.+.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|+.
T Consensus 174 ~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 174 ILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 234689999999999999999999998 7899999999999999999999999999999999999999999875
No 22
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=1.2e-16 Score=135.31 Aligned_cols=71 Identities=25% Similarity=0.272 Sum_probs=66.0
Q ss_pred ccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 84 ETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
...|||+.||||||++++.+|.|+++ +.||+ +.|+|.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999998 68987 9999999999999999999999999999999999999743
No 23
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.68 E-value=7.2e-17 Score=136.19 Aligned_cols=70 Identities=24% Similarity=0.332 Sum_probs=64.7
Q ss_pred ccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 84 ETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
...|||+.||||||++ ..|.|+++ ++||+|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||..|...
T Consensus 14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCC
Confidence 3578999999999996 68999998 689999999999999999998 8999999999999999999999753
No 24
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.68 E-value=2e-17 Score=139.94 Aligned_cols=70 Identities=19% Similarity=-0.032 Sum_probs=64.0
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCE-eecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGM-NFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~-~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
..|||+.||||||+. ...|.|++++.||+|++.|+|.|.|+|. .++.|.|+|||+|||.||+.||..|.-
T Consensus 5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp CHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 357999999999997 4689999996799999999999999998 899999999999999999999987753
No 25
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.68 E-value=8.7e-17 Score=139.41 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=67.1
Q ss_pred CChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEE-----CCEeecccccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 012622 86 GIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVEL-----AGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNLD 160 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V-----~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~~ 160 (460)
.|||+.||||||++++ .|.|++.+.||+|.+.|+|.|.| +|..++.|.|+|||+|||+||+.||..|....-..
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ie 104 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIE 104 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4899999999999999 99999558899999999999999 58888899999999999999999999998654433
No 26
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.66 E-value=3.8e-17 Score=157.31 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCccccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARVL 82 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~k 82 (460)
...|.++|.+.+ +..|.....|....... ....+.++.||+.+++++.+.+...|.+++...|...+.... ..
T Consensus 103 ~~~la~~a~~lg--L~~~l~~~~~e~~~~~~-~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~----~~ 175 (252)
T 1o0w_A 103 EEVLAMVSRKMN--LGKFLFLGKGEEKTGGR-DRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIM----KG 175 (252)
T ss_dssp HHHHHHHHHHTT--HHHHCBCCHHHHHTTGG-GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHcC--cHHhhccCchhhhcCCC-CCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh----hc
Confidence 357889999955 66777653322111000 112445678999989999999999888888877765432111 01
Q ss_pred cccCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 83 DETGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 83 D~~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
....|||+.||||||++++..|.|+++ ++||+|.+.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|...
T Consensus 176 ~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 176 EMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp CCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred ccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 124689999999999999999999998 68999999999999999999999999999999999999999999653
No 27
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=133.67 Aligned_cols=69 Identities=29% Similarity=0.268 Sum_probs=63.8
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
..++|+.||||||+++ .|.|+++ ++||+|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999998 7899998 789999999999999999987 7999999999999999999999744
No 28
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.65 E-value=1e-16 Score=140.50 Aligned_cols=70 Identities=19% Similarity=-0.032 Sum_probs=63.9
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCE-eecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGM-NFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~-~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
..|||+.||||||+. ...|.|+++..||+|.+.|+|.|.|+|. .++.|.|.|||+|||+||+.||..|.-
T Consensus 7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~ 77 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp CTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999995 4789999996699999999999999999 899999999999999999999987654
No 29
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.63 E-value=4.7e-16 Score=137.88 Aligned_cols=70 Identities=30% Similarity=0.257 Sum_probs=65.6
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeeccccc-CCHHHHHHHHHHHHHHHHhcC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPA-KTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G-~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
..|||+.||||||++++.+|.|+++.. +|.+.|+|.|.|+|..|+.|.| +|||+|||+||+.||+.|...
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999965 8999999999999999999999 999999999999999999743
No 30
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.3e-18 Score=165.98 Aligned_cols=150 Identities=26% Similarity=0.329 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCC-CCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCCCCcccccc
Q 012622 3 KNQLQELAQRSCF-NLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPSRSLTARV 81 (460)
Q Consensus 3 KS~LQElcQK~gl-~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p~~~l~d~~ 81 (460)
...|.++|.+.+. ++..|.....|....... ..-.+-++.||+.+++++.+.+...|.+++...|...+.....
T Consensus 83 ~~~la~~a~~l~~~gL~~~l~~~~~e~~~~~~-~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~---- 157 (242)
T 2a11_A 83 TQALADVARRLCAEGLGVHVLLGRGEANTGGA-DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPT---- 157 (242)
T ss_dssp HHHHHHHHHHHSSSCSGGGCBCCHHHHHTTGG-GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC----
T ss_pred HHHHHHHHHHhhhhChHHHhhcCchhhhcCCC-CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhh----
Confidence 3568899999610 366777764332111100 0123456789999889999999998888887776654322111
Q ss_pred ccccCChhHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCC
Q 012622 82 LDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157 (460)
Q Consensus 82 kD~~~NyKS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~ 157 (460)
.+...|||+.||||||++++..|.|+++.+||+|.+.|+|.|.|+|..++.|.|.|||+||++||+.||+.|....
T Consensus 158 ~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 158 LGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 1124689999999999999999999998899999999999999999988999999999999999999999997654
No 31
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.62 E-value=5.1e-16 Score=135.28 Aligned_cols=69 Identities=28% Similarity=0.414 Sum_probs=63.6
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCCCC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPNL 159 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~~~ 159 (460)
..|||+.||||||+ |.|+++ ++||+|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|....+.
T Consensus 36 ~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~ 105 (114)
T 2ljh_A 36 PKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKDG 105 (114)
T ss_dssp CSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTTC
T ss_pred CCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 56899999999984 899998 789999999999999999999 8999999999999999999999876553
No 32
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.61 E-value=9.5e-16 Score=120.90 Aligned_cols=67 Identities=31% Similarity=0.398 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHh
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLS 69 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~ 69 (460)
|+|+.||||||++++.+|.|.++ .+||+|++.|++.|.|+|. ++.| .|.|||.|++.||+.+|..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G-~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG-SGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999987 6899999999999999997 7777 699999999999999999875
No 33
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.59 E-value=3.5e-15 Score=118.99 Aligned_cols=68 Identities=37% Similarity=0.560 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccch-hhhHHHHHHHHHHHHHHHh
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHAAAEVALNVLS 69 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG-~SKKqAEq~AAr~aL~~L~ 69 (460)
.||+.||||||++++.+|.|+++.+||+|++.|++.|.|+|..++.| .| .|||.|++.||+.+|..|.
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999999779999999999999999988888 58 8999999999999999875
No 34
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.58 E-value=3e-15 Score=118.80 Aligned_cols=65 Identities=25% Similarity=0.234 Sum_probs=59.6
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
..||++.||||| ..|.|+++ ++||+|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence 468999999993 67999997 789999999999999999876 799999999999999999999875
No 35
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.57 E-value=5.3e-15 Score=119.09 Aligned_cols=68 Identities=29% Similarity=0.445 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||++++.+|.|.++ ..||+|++.|++.|.|+|..++.| .|.|||.||+.||+.+|..|..
T Consensus 6 ~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 6 CKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999998 689999999999999999888887 5899999999999999998864
No 36
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=116.36 Aligned_cols=66 Identities=29% Similarity=0.291 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 88 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 88 yKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
.|+.|++|+|.. ..|.|+++ ++||+|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 455666666664 57899998 789999999999999999988 7999999999999999999999754
No 37
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=118.32 Aligned_cols=68 Identities=28% Similarity=0.322 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++.+|.|.++ ..||+|++.|++.|.|+|. ++.| .|.+||.||+.||+.+|..|...
T Consensus 17 ~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 17 EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHHcc
Confidence 7999999999999999999997 6899999999999999997 7777 69999999999999999998753
No 38
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.50 E-value=4.3e-14 Score=117.61 Aligned_cols=67 Identities=28% Similarity=0.329 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||++++.+|.|.++ ..|++|++.|++.|.|+|. ++.| .|.+||+||+.||+.+|..|..
T Consensus 18 ~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 18 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999997 6899999999999999997 7777 6999999999999999999864
No 39
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.50 E-value=5.3e-14 Score=117.07 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=62.5
Q ss_pred CcHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
.||+.||||||++++.+|.|+++ ..|++|++.|++.|.|+|. +..| .|.+||+||+.||+.+|..|..
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG-TGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999999997 6899999999999999996 7776 5999999999999999999864
No 40
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=6.2e-14 Score=119.52 Aligned_cols=70 Identities=36% Similarity=0.544 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccch-hhhHHHHHHHHHHHHHHHhcc
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG-~SKKqAEq~AAr~aL~~L~~~ 71 (460)
.||+.||||||++++.+|.|.++.+||+|++.|++.|.|+|..++.| .| .|||.||+.||+.+|..|...
T Consensus 18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAKS 88 (103)
T ss_dssp -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhcc
Confidence 48999999999999999999999779999999999999999988888 58 899999999999999999864
No 41
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.48 E-value=3.6e-14 Score=117.16 Aligned_cols=68 Identities=31% Similarity=0.392 Sum_probs=61.7
Q ss_pred cHHHHHHHHHH-----cCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQR-----SCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK-----~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||+ .++.+|.|.++ ++||+|++.|++.|.|+|..++.| .|.|||+||+.||+.+|..|..
T Consensus 3 ~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G-~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 3 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG-KGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp SCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE-EESSHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhH
Confidence 79999999998 46678999998 689999999999999999888887 6899999999999999987754
No 42
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.48 E-value=6.2e-16 Score=156.10 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHH---HHHHHHHHHHHHHhccCCCCcccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQ---AEHAAAEVALNVLSTRGPSRSLTA 79 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKq---AEq~AAr~aL~~L~~~~p~~~l~d 79 (460)
...|.++|.+.| +..|.....|+.....-...-.|-++.||+.+||++.+. +...|.+++...+...+.......
T Consensus 170 ~~~La~iA~~lg--L~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~ 247 (341)
T 3rv0_A 170 NNNLFDWSTKLN--FTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMV 247 (341)
T ss_dssp HHHHHHHHHHTT--TTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGGC-
T ss_pred HHHHHHHHHHcC--cHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467899999955 667776432322110000012344578999999999999 899999988887766543221100
Q ss_pred ccccccCChhHHHHHHHHHcCCCC-CeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 80 RVLDETGIYKNLLQETAHRAGLNL-PVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 80 ~~kD~~~NyKS~LQE~cQK~~l~l-P~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
.......|||+.||||||++++.. |.|+++ +.|| |+|.|.|+|..++.|.|.|||+|||.||+.||+.|...
T Consensus 248 ~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 248 IKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 001124689999999999998765 599988 5675 99999999999999999999999999999999999765
No 43
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=133.13 Aligned_cols=70 Identities=26% Similarity=0.271 Sum_probs=65.9
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
..|||+.||||||++++..|.|+++ +.||+ +.|+|.|.|+|..|+.|.|+|||+||++||+.||..|...
T Consensus 21 ~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999998 67987 9999999999999999999999999999999999999764
No 44
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.46 E-value=1.2e-13 Score=113.56 Aligned_cols=67 Identities=30% Similarity=0.413 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||+++ .+|.|.++ +.||+|++.|++.|.|+| .+..| .|.+||+||+.||+.+|..|...
T Consensus 10 ~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 10 PIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTG-EGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp HHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEE-CSSCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEe-eeCCHHHHHHHHHHHHHHHHhcc
Confidence 7999999999998 68999997 689999999999999999 77777 68999999999999999998753
No 45
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.45 E-value=3.9e-14 Score=113.73 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||++++. |.|.++ ..||+|++.|++.|.|+| .++.| .|.|||.|++.||+.+|..|..
T Consensus 9 ~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G-~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 9 PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEG-EGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp HHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence 799999999999998 999998 789999999999999999 77777 6899999999999999998854
No 46
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.44 E-value=1.3e-13 Score=116.43 Aligned_cols=68 Identities=25% Similarity=0.414 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++. |.|.++ +.||+|++.|++.|.|+|..++.| .|.+||+||+.||+.+|..|...
T Consensus 16 ~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 16 YMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp HHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999986 799987 789999999999999999888887 58999999999999999999754
No 47
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.44 E-value=2.2e-13 Score=108.75 Aligned_cols=65 Identities=35% Similarity=0.426 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||+ +.+|.|.++ +.||+|++.|++.|.|+|..+ .| .|.|||.||+.||+.+|..|..
T Consensus 6 ~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 6 PKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE-EESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-ecCCHHHHHHHHHHHHHHHHhc
Confidence 89999999997 678999997 689999999999999999887 55 6999999999999999998874
No 48
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.41 E-value=2.6e-13 Score=115.12 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECc-eeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNG-EIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG-~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++ +.+|.|.+...|++|++.|++.|.|+| ..++.| .|.+||+||+.||+.+|..|...
T Consensus 8 ~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 8 IKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp SHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEe-ccCCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999 789999997789999999999999999 677777 68999999999999999999764
No 49
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=112.00 Aligned_cols=67 Identities=31% Similarity=0.366 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||+++ ..|.|.++ ++|++|++.|++.|.|+|. ++.| .|.|||+||+.||+.+|..|...
T Consensus 16 ~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 16 PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTG-QGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp HHHHHHHHHHHTT-CCCEEEEEEEC-----CCEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcC-CCCEEEEEEeECCCCCCcEEEEEEECCE-EEEE-EeCCHHHHHHHHHHHHHHHHHhc
Confidence 7999999999987 47999987 7899999999999999997 5666 69999999999999999998653
No 50
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.39 E-value=5.8e-13 Score=110.50 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCC-ceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAP-RFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p-~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++.+ .|+ ...||+|++ .|++.|.|+|..++.| .|.+||+||+.||+.+|..|...
T Consensus 8 ~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 8 YIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp HHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999876 999 778999999 7999999999988887 68999999999999999999765
No 51
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.38 E-value=1e-12 Score=113.82 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEE-----CceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNF-----NGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~I-----dG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++ +|.|.+...||+|++.|++.|.| +|..++.| .|.+||.|++.||+.+|..|...
T Consensus 28 ~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G-~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 28 AKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhc
Confidence 69999999999998 89999558899999999999999 57777777 68999999999999999998764
No 52
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.37 E-value=7.3e-13 Score=111.11 Aligned_cols=69 Identities=29% Similarity=0.324 Sum_probs=61.7
Q ss_pred CcHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCC
Q 012622 1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP 73 (460)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p 73 (460)
++|+.||||||+++ .|.|+++ ++||+|++.|++.|.|+|..+ .| .|.|||+||+.||+.+|..|....+
T Consensus 15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHhhcCC
Confidence 47999999999987 7899988 689999999999999999887 55 6999999999999999999976433
No 53
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.37 E-value=1.1e-12 Score=110.68 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||++ .+|.|.++ ..||+|++.|++.|.|+|..+ .| .|.+||+||+.||+.+|..|..
T Consensus 18 ~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 18 LMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA-SGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHhCC
Confidence 899999999995 68999998 689999999999999999987 55 6899999999999999999964
No 54
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.37 E-value=3.3e-13 Score=114.12 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECce-eeecccchhhhHHHHHHHHHHHHHHHh
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGE-IFESPSYCTTLRQAEHAAAEVALNVLS 69 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~-vfEsG~gG~SKKqAEq~AAr~aL~~L~ 69 (460)
||+.||||+|+.+ .+|.|.++.+||+|++.|++.|.|+|. .++.| .|.|||+|||.||+.+|..|.
T Consensus 8 ~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 8 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp HHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEE-EESSHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHH
Confidence 7999999999974 689999997799999999999999998 78887 699999999999999987654
No 55
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.36 E-value=1.4e-12 Score=110.18 Aligned_cols=67 Identities=28% Similarity=0.341 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++.+|.|.++ ..|++ +.|++.|.|+|..++.| .|.+||.||+.||+.+|..|...
T Consensus 18 ~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 18 EVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp HHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999998 57887 89999999999888887 58999999999999999999754
No 56
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.32 E-value=2.5e-12 Score=113.99 Aligned_cols=66 Identities=23% Similarity=0.245 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccch-hhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYC-TTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG-~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||++++.+|.|.++.. +|++.|++.|.|+|..|+.| .| .+||+||+.||+.+|..|..
T Consensus 28 ~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 28 PKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999966 89999999999999989888 58 99999999999999999964
No 57
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.32 E-value=1.1e-12 Score=115.05 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECce-eeecccchhhhHHHHHHHHHHHHHHHh
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGE-IFESPSYCTTLRQAEHAAAEVALNVLS 69 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~-vfEsG~gG~SKKqAEq~AAr~aL~~L~ 69 (460)
||+.||||||+.+ .+|.|.++.+||+|++.|++.|.|+|. .++.| .|.|||+|||.||+.+|..+.
T Consensus 10 ~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 10 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp HHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHH
Confidence 7999999999954 789999997799999999999999998 78887 699999999999999986644
No 58
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.25 E-value=1.1e-11 Score=118.89 Aligned_cols=69 Identities=30% Similarity=0.406 Sum_probs=62.8
Q ss_pred CChhHHHHHHHHHcCCCCCeEEee-ccCCCCCCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhcCC
Q 012622 86 GIYKNLLQETAHRAGLNLPVYTTV-RSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMP 157 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~l~lP~Yevv-esGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~~~ 157 (460)
.++|+.|++|++. +..|.|+++ +.||+|.+.|+|.|.|+|..+ .|.|.|||+|||+||+.||+.|....
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence 4799999999986 467999998 689999999999999999886 79999999999999999999998754
No 59
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.23 E-value=7e-12 Score=109.22 Aligned_cols=63 Identities=29% Similarity=0.322 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||+ |.|+++ +.|++|++.|++.|.|+|..| .| .|.|||+||+.||+.+|..|...
T Consensus 39 ~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 39 TVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LG-QGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp HHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999985 899997 689999999999999999988 66 68999999999999999998763
No 60
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.16 E-value=5.9e-11 Score=94.00 Aligned_cols=62 Identities=27% Similarity=0.291 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
+|+.||||| .+|.|.++ ..|++|++.|++.|.|+|..+ .| .|.|||+||+.||+.+|..|..
T Consensus 6 p~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G-~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 6 PVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG-SGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp HHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EE-EESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHHHh
Confidence 689999993 57999987 689999999999999999876 55 6899999999999999998864
No 61
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.16 E-value=6.8e-11 Score=95.15 Aligned_cols=66 Identities=29% Similarity=0.339 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccC
Q 012622 3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRG 72 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~ 72 (460)
|+-|+||+|.. ..|.|.++ ++|++|++.|++.|.|+|..+ .| .|.|||.||+.||+.+|..|....
T Consensus 7 K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 7 KNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp CCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EE-EECCHHHHHHHHHHHHHHHHHccC
Confidence 67789999985 58999998 689999999999999999988 55 699999999999999999997654
No 62
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.10 E-value=8.1e-11 Score=110.83 Aligned_cols=66 Identities=30% Similarity=0.419 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHh
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLS 69 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~ 69 (460)
||+.||||||++++.+|.|.++ +.|++|++.|++.|.|+|. ++.| .|.|||.||+.||+.+|..|.
T Consensus 152 pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G-~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG-EGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE-ecCCHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999987 7899999999999999998 8887 699999999999999999885
No 63
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.09 E-value=1.2e-10 Score=112.02 Aligned_cols=68 Identities=31% Similarity=0.374 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||+.++..|.|.++ +.|++|++.|++.|.|+|..++.| .|.|||+||+.||+.+|..|..
T Consensus 181 pkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence 7999999999999889999998 689999999999999999888887 6899999999999999999864
No 64
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.04 E-value=2.9e-11 Score=116.42 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=79.7
Q ss_pred EECceeeecccchhhhHHHH--HHHHHHHHHHHhccCCCCccccccccccCChhHHHHHHHHHcCCCCCeEEeeccCCCC
Q 012622 38 NFNGEIFESPSYCTTLRQAE--HAAAEVALNVLSTRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGH 115 (460)
Q Consensus 38 ~IdG~vfEsG~gG~SKKqAE--q~AAr~aL~~L~~~~p~~~l~d~~kD~~~NyKS~LQE~cQK~~l~lP~YevvesGP~H 115 (460)
.+-++.||+.++|++.+.+. ..+.+++...|...+.... ..++|+.||||+|.... .+.|. ..|+.|
T Consensus 155 ~~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~~~--------~~~~k~~l~el~~~~~~-~~~~~--~~~~~~ 223 (265)
T 3c4b_A 155 KAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFS--------ANVPRSPVRELLEMEPE-TAKFS--PAERTY 223 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--------HHSCCCHHHHHHHHCTT-TEEEC--CCEECT
T ss_pred hHHHHHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHhHh--------hcCCCCHHHHHHHhccC-Cceee--eccccC
Confidence 45567899999999999988 7777777777665422111 12456666666665432 23333 345578
Q ss_pred CCeEEEEEEECCEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 116 VPIFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 116 ~p~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
.+.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|..
T Consensus 224 ~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 224 DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp TSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999899999999999999999999999974
No 65
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=98.93 E-value=1.1e-10 Score=112.67 Aligned_cols=68 Identities=29% Similarity=0.521 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||++++.+|.|.++ ..|++|.+.|++.|.|+|..++.| .|.|||+||+.||+.+|+.|..
T Consensus 179 pks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999998 789999999999999999888887 6999999999999999988753
No 66
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.2e-10 Score=111.15 Aligned_cols=69 Identities=32% Similarity=0.425 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhcc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTR 71 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~ 71 (460)
||+.||||||++++..|.|.++..|++|.+.|++.|.|+|..++.| .|.|||+||+.||+.+|..|...
T Consensus 164 pkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~skk~Ae~~AA~~AL~~L~~~ 232 (242)
T 2a11_A 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSG-VGRSKKEAEQKAAAAAWKALEVL 232 (242)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999889999998899999999999999999888877 59999999999999999998764
No 67
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.28 E-value=1e-07 Score=96.41 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCC-CceEEE-eeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNL-PSYTCI-REGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~L-PeY~ll-eeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
||+.||||||++++.. |.|.++ +.|+ |++.|.|+|..++.| .|.|||+||+.||+.+|..|..
T Consensus 256 ~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G-~G~SKK~AEq~AA~~AL~~L~~ 320 (341)
T 3rv0_A 256 AKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEA-EGNSIREAEHRAAMKVLENDEL 320 (341)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHhhh
Confidence 7999999999988766 599988 4553 999999999988887 6999999999999999988865
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=97.75 E-value=2.6e-05 Score=74.88 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
+|+.|+||.|.... .+.|. ..++.|++.|++.|.|+|..++.| .|.|||.||+.||+.+|..|..
T Consensus 199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G-~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKG-VGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEE-EESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence 56778888887541 22222 345578999999999999888877 6899999999999999998864
No 69
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=96.13 E-value=0.00078 Score=74.49 Aligned_cols=114 Identities=12% Similarity=0.025 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhH-HHHHHHHHHHHHHHhccCCCCcccccc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLR-QAEHAAAEVALNVLSTRGPSRSLTARV 81 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKK-qAEq~AAr~aL~~L~~~~p~~~l~d~~ 81 (460)
...|.++|++.| ++.|...+.|+. ..-.+-++.||+.++|++.+ .+.+.|.+++...+.........
T Consensus 375 n~~La~~A~~lg--L~~~l~~~~~e~------~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~---- 442 (756)
T 2qvw_A 375 NEALNYLVQTLG--LPQLAEFSNNLV------AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTV---- 442 (756)
T ss_dssp HHHHHHHHHHTT--CTTTCBCCSCC--------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC-----
T ss_pred chHHHHHHHHcC--hHHHhccCCCCC------CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccc----
Confidence 357899999955 788988866653 12345677899999999999 99998888888888766443221
Q ss_pred ccccCCh-hHHHHHHHHHcCCCCCeEEeeccCCCCCCeEEEEEEECCEeecccccCCHHHHH---------HHHHHHHHH
Q 012622 82 LDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGHVPIFTCTVELAGMNFTGEPAKTKKQAE---------KNAAIAAWS 151 (460)
Q Consensus 82 kD~~~Ny-KS~LQE~cQK~~l~lP~YevvesGP~H~p~Ft~tV~V~G~~fg~G~G~SKKeAE---------Q~AAk~AL~ 151 (460)
.....|| |+.||||||+++ ++.|.+.+.+.|| -.||+.||+
T Consensus 443 ~~~~~Dp~Kt~LqE~~q~~~-----------------------------ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~ 493 (756)
T 2qvw_A 443 GSACPDAVTKASKRVCMGEA-----------------------------GAHEFRSLVDYACEQGISVFCSSRVSTMFLE 493 (756)
T ss_dssp --CCCHHHHHHHHHHHTSCC-----------------------------CHHHHHHHHHHTTTTTCCCBSSSHHHHHHHH
T ss_pred cccccCchHHHHHHHHhccc-----------------------------hhhhhhhhhhHHhhhccccchhhHHHHHHHH
Confidence 1234568 999999998544 2334556666666 569999998
Q ss_pred HHhcCC
Q 012622 152 ALKRMP 157 (460)
Q Consensus 152 ~L~~~~ 157 (460)
.|...+
T Consensus 494 ~l~~~~ 499 (756)
T 2qvw_A 494 RLRDIP 499 (756)
T ss_dssp HHHHSC
T ss_pred hhcccc
Confidence 887653
No 70
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.43 E-value=0.027 Score=47.73 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHcC-----CCCCeEEeeccCCCCCCeEEEEEEECCE----eecccccCCHHHHHHHHHHHHHHHHhcC
Q 012622 86 GIYKNLLQETAHRAG-----LNLPVYTTVRSGPGHVPIFTCTVELAGM----NFTGEPAKTKKQAEKNAAIAAWSALKRM 156 (460)
Q Consensus 86 ~NyKS~LQE~cQK~~-----l~lP~YevvesGP~H~p~Ft~tV~V~G~----~fg~G~G~SKKeAEQ~AAk~AL~~L~~~ 156 (460)
.+.++.|+.||++.- ...|.|.+..... ....| |+|.+-.. .+.+..-.+|+.||+.||-+|...|.+.
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence 357899999999874 3468998652111 12367 99998542 1222345999999999999999999998
Q ss_pred CCCCCC
Q 012622 157 PNLDSL 162 (460)
Q Consensus 157 ~~~~s~ 162 (460)
...++-
T Consensus 82 G~Ldd~ 87 (102)
T 2kou_A 82 GVLNDF 87 (102)
T ss_dssp CSCTTT
T ss_pred CCCccc
Confidence 887763
No 71
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=93.87 E-value=0.051 Score=61.36 Aligned_cols=76 Identities=30% Similarity=0.443 Sum_probs=54.2
Q ss_pred cCChhHHHHHHHHHcCCCCCeEEeec------cC------CCCCC-eEEEEEEECCEeecccccCCHHHHHHHHHHHHHH
Q 012622 85 TGIYKNLLQETAHRAGLNLPVYTTVR------SG------PGHVP-IFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWS 151 (460)
Q Consensus 85 ~~NyKS~LQE~cQK~~l~lP~Yevve------sG------P~H~p-~Ft~tV~V~G~~fg~G~G~SKKeAEQ~AAk~AL~ 151 (460)
...||..++ ||.| ....|.+++ .| |...| .|.|.+.+-+..+..+..+.||+|||.||+.||+
T Consensus 16 ~~~pk~~~~---q~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~ 91 (950)
T 3htx_A 16 TPTPKAIIH---QKFG-AKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALD 91 (950)
T ss_dssp CCCCHHHHH---HTTG-GGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHH---HHhC-cceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHH
Confidence 345777664 2333 336897752 12 22233 8999999988766678999999999999999999
Q ss_pred HHhcCCCCCCCCC
Q 012622 152 ALKRMPNLDSLTN 164 (460)
Q Consensus 152 ~L~~~~~~~s~~~ 164 (460)
+|+..+-.+..++
T Consensus 92 ~~g~~~~~~~~~~ 104 (950)
T 3htx_A 92 KLGIRPQNDDLTV 104 (950)
T ss_dssp TTTSTTTSCCCCH
T ss_pred HhCCCccccCcch
Confidence 9999776666553
No 72
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.95 E-value=0.78 Score=40.08 Aligned_cols=73 Identities=29% Similarity=0.239 Sum_probs=50.6
Q ss_pred ccCChhHHHHHHHHHcCC-----CCCeEEeeccCCCCCCeEEEEEEEC---CEeecccccCCHHHHHHHHHHHHHHHHhc
Q 012622 84 ETGIYKNLLQETAHRAGL-----NLPVYTTVRSGPGHVPIFTCTVELA---GMNFTGEPAKTKKQAEKNAAIAAWSALKR 155 (460)
Q Consensus 84 ~~~NyKS~LQE~cQK~~l-----~lP~YevvesGP~H~p~Ft~tV~V~---G~~fg~G~G~SKKeAEQ~AAk~AL~~L~~ 155 (460)
+...||++|....|+.-. +.-.|-. .+|. ++=.|++.+. -.+| .|.|+.|-+||..||..|+..|+.
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~-t~g~---k~K~~tl~l~WP~~mef-~a~G~rK~eAE~kAAA~AC~kLK~ 89 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH-TNGP---KKKKVTLHIKWPKSVEV-EGYGSKKIDAERQAAAAACQLFKG 89 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE-CCSS---SSEEEEEEECSSSCEEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEe-ecCC---ceeEEEEEecCCCcEEE-EeeccchHHHHHHHHHHHHHHHHH
Confidence 466899999998887632 1112222 2342 3346776664 2333 479999999999999999999998
Q ss_pred CCCCCC
Q 012622 156 MPNLDS 161 (460)
Q Consensus 156 ~~~~~s 161 (460)
....+.
T Consensus 90 Lgll~p 95 (119)
T 2db2_A 90 WGLLGP 95 (119)
T ss_dssp HTSSCT
T ss_pred cCccCC
Confidence 877665
No 73
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=56.33 E-value=25 Score=29.40 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHcCC-----CCCceEEEeeCCCCCCceEEEEEECce----eeecccchhhhHHHHHHHHHHHHHHHhccC
Q 012622 2 YKNQLQELAQRSCF-----NLPSYTCIREGPDHAPRFKASVNFNGE----IFESPSYCTTLRQAEHAAAEVALNVLSTRG 72 (460)
Q Consensus 2 yKS~LQElcQK~gl-----~LPeY~lleeGP~H~p~Ftv~V~IdG~----vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~ 72 (460)
..+.|+.||++.-- ..|.|.+..... ....| |+|.+-.. .+... ...+|+.|++.||-.+...|.+.+
T Consensus 6 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 6 SISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESS-LLPSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp HHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEE-EESSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCC-ccccHHHHHHHHHHHHHHHHHHCC
Confidence 36789999999532 247888642211 12366 88887431 12222 358999999999999999998764
No 74
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=42.62 E-value=0.69 Score=42.11 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhccCC
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGP 73 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~~~p 73 (460)
...|.+++.+.| +..|.....|...... .....+-++.||+.++|++.+.+.+.|.+++...|.+.+.
T Consensus 101 ~~~La~ia~~lg--L~~~l~~~~~~~~~~~-~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~~~~~ 168 (170)
T 3o2r_A 101 EKSFAKIANSLN--LGDFILMSVAEENNGG-KEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168 (170)
T ss_dssp HHHHHHHHHHTT--GGGTCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcC--cHHhhhcCcchhhcCC-CCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 467899999955 7788877433211100 1113455778999999999999999999999888877543
No 75
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=31.82 E-value=46 Score=38.00 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=31.2
Q ss_pred ceEEEEEECceeeecccchhhhHHHHHHHHHHHHHHHhc
Q 012622 32 RFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLST 70 (460)
Q Consensus 32 ~Ftv~V~IdG~vfEsG~gG~SKKqAEq~AAr~aL~~L~~ 70 (460)
.|.|.+.+-+..+-++ ...-||+|||.||+.+|+.|.-
T Consensus 58 ~~~c~~~lp~~~~~~~-~~~~kkd~eq~aa~~al~~~g~ 95 (950)
T 3htx_A 58 LYRCHLQLPEFSVVSN-VFKKKKDSEQSAAELALDKLGI 95 (950)
T ss_dssp EEEEEEECSSCEEECC-CBSCHHHHHHHHHHHHHTTTTS
T ss_pred eEEEEeeCCCceEecc-hhhccccHHHHHHHHHHHHhCC
Confidence 7888888876555455 5799999999999999988864
No 76
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=21.55 E-value=9 Score=36.96 Aligned_cols=67 Identities=4% Similarity=-0.112 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCCCceEEEeeCCCCCCceEEEEEECceeeecccchhhhHH---HHHHHHHHHHHHHhcc
Q 012622 3 KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQ---AEHAAAEVALNVLSTR 71 (460)
Q Consensus 3 KS~LQElcQK~gl~LPeY~lleeGP~H~p~Ftv~V~IdG~vfEsG~gG~SKKq---AEq~AAr~aL~~L~~~ 71 (460)
...|.++|.+.| +..|.....|+...........|-++.||+.+||++.+. +...+.+++...+.+.
T Consensus 170 n~~La~iA~~lg--L~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L~~p~ 239 (246)
T 3rv1_A 170 NNNLFDWSTKLN--FTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKK 239 (246)
T ss_dssp HHHHHHHHHHTT--SHHHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHCC--cHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHHHH
Confidence 457899999955 677776432332211111234566788999999999998 3677777776665554
Done!