BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012624
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS------RQ 273
VLDVGCG G L + + V V + QV A R A + N ++
Sbjct: 65 VLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXD 122
Query: 274 LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
LP+ SFD V + + G L E R+L+PGG +
Sbjct: 123 LPFEDASFDAVWALES-LHHXPDRGRALREXARVLRPGGTVAIA 165
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGNFISRQLP 275
VLDVGCG G L AV V + E +Q ERG L + G+ S LP
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGVDISEVX---IQKGKERGEGPDLSFIKGDLSS--LP 111
Query: 276 YPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGY 313
+ + F+ + + W ++ L E R+LK GY
Sbjct: 112 FENEQFEAIXAINS-LEWTEEPLRALNEIKRVLKSDGY 148
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLPAM-IGNFISRQL 274
VLD+G G G L + C+ V +AT V++A E+G+ + + L
Sbjct: 25 VLDIGAGAGHTA--LAFSPYVQECIGV-DATKEXVEVASSFAQEKGVENVRFQQGTAESL 81
Query: 275 PYPSLSFDMVHCAQCGIIW-DKKEGIFLIEADRLLKPGGYFVL 316
P+P SFD++ C + D ++ + E R+LK G F+L
Sbjct: 82 PFPDDSFDIITCRYAAHHFSDVRKAVR--EVARVLKQDGRFLL 122
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+ VLD+GC G+ GA ++K V+ EA + A E+ ++G+ + PY
Sbjct: 34 KEVLDIGCSSGALGA---AIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETXDXPYE 90
Query: 278 SLSFDMV 284
FD V
Sbjct: 91 EEQFDCV 97
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+S+L+VG G G + L + + V E + + + + R A LP+P
Sbjct: 38 ESLLEVGAGTGYWLRRLPYPQKVGV-----EPSEAXLAVGRRRAPEATWVRAWGEALPFP 92
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
SFD+V + E + L+EA R+L+PGG V+
Sbjct: 93 GESFDVVLLFTTLEFVEDVERV-LLEARRVLRPGGALVV 130
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 214 QAGVQSVLDVGCGFGSF--------GAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAM 265
+ G ++D+GCGFG F ++++ L L +A A G + ER
Sbjct: 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAGPDTGITYERA---- 96
Query: 266 IGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
+L P SFD+ + + + + + + L PGG+FV +
Sbjct: 97 ----DLDKLHLPQDSFDLAYSS-LALHYVEDVARLFRTVHQALSPGGHFVFS 143
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLS 280
+++G G G F L + + V E + ++A +RG+ + G + LP S
Sbjct: 52 VEIGVGTGRFAVPL------KIKIGV-EPSERXAEIARKRGVFVLKGT--AENLPLKDES 102
Query: 281 FDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
FD D E L EA R+LK GGY ++
Sbjct: 103 FDFALXVTTICFVDDPERA-LKEAYRILKKGGYLIV 137
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 220 VLDVGCGFGSFGAHLVS-------LKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR 272
+LD+GCG G L S + + + + + E L + G A +
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS 93
Query: 273 QLPYPSLSFDM-VHCAQCGIIWDKKEGIFLI-EADRLLKPGGYFVL 316
L + SFD V A + D KE +I E R+LKPG Y L
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
>pdb|2DSJ|A Chain A, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
pdb|2DSJ|B Chain B, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
Length = 423
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 210 SEFLQAGVQS-VLDVGCGFGSFGAHLVSLKLMA-VCVAVYEATGSQVQ---LALERGLPA 264
S+ L AG +S VLDV G G+F L +L+A VA+ + G +V+ ++E L
Sbjct: 185 SKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTMVAIGQGAGRRVRALLTSMEAPLGR 244
Query: 265 MIGNFIS 271
+GN I
Sbjct: 245 AVGNAIE 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,185,740
Number of Sequences: 62578
Number of extensions: 515421
Number of successful extensions: 973
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 12
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)