Query 012624
Match_columns 460
No_of_seqs 605 out of 3381
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 9.1E-70 2E-74 559.4 15.4 314 95-418 1-328 (506)
2 PF01209 Ubie_methyltran: ubiE 99.8 2.3E-18 4.9E-23 167.1 12.0 103 218-321 49-156 (233)
3 COG2226 UbiE Methylase involve 99.8 4.8E-18 1E-22 164.3 14.2 103 218-322 53-160 (238)
4 PLN02233 ubiquinone biosynthes 99.7 1.2E-16 2.7E-21 157.5 14.9 103 218-321 75-185 (261)
5 PF08241 Methyltransf_11: Meth 99.7 1.5E-16 3.3E-21 130.2 10.2 93 221-316 1-95 (95)
6 KOG4300 Predicted methyltransf 99.7 9.7E-17 2.1E-21 149.3 7.8 142 218-384 78-226 (252)
7 PRK10258 biotin biosynthesis p 99.6 2.8E-15 6.1E-20 146.4 12.7 132 181-321 12-143 (251)
8 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.2E-15 2.7E-20 145.9 9.6 102 218-323 61-166 (243)
9 PLN02244 tocopherol O-methyltr 99.6 2.3E-14 4.9E-19 146.7 17.2 102 217-321 119-226 (340)
10 PTZ00098 phosphoethanolamine N 99.6 1.7E-14 3.7E-19 142.5 15.5 158 196-363 40-210 (263)
11 PF13489 Methyltransf_23: Meth 99.6 1.2E-14 2.6E-19 130.8 11.5 96 218-322 24-119 (161)
12 PLN02396 hexaprenyldihydroxybe 99.6 3.4E-14 7.4E-19 144.0 14.2 100 218-321 133-238 (322)
13 KOG1540 Ubiquinone biosynthesi 99.6 3.5E-14 7.5E-19 136.2 13.3 133 188-321 64-217 (296)
14 PRK14103 trans-aconitate 2-met 99.6 2.5E-14 5.3E-19 140.4 12.6 98 218-320 31-128 (255)
15 PRK05785 hypothetical protein; 99.5 4.1E-14 8.9E-19 136.7 12.7 89 218-312 53-141 (226)
16 TIGR02752 MenG_heptapren 2-hep 99.5 1.3E-13 2.8E-18 132.8 15.1 117 196-321 33-154 (231)
17 TIGR00477 tehB tellurite resis 99.5 1.9E-13 4E-18 129.1 15.5 140 218-363 32-177 (195)
18 TIGR00740 methyltransferase, p 99.5 2.2E-13 4.8E-18 132.2 16.3 102 218-321 55-164 (239)
19 PRK11207 tellurite resistance 99.5 2.3E-13 5.1E-18 128.7 15.2 97 218-318 32-134 (197)
20 PRK01683 trans-aconitate 2-met 99.5 3E-13 6.6E-18 132.5 14.9 100 218-320 33-132 (258)
21 PF12847 Methyltransf_18: Meth 99.5 1.8E-13 3.9E-18 116.3 11.2 100 218-319 3-112 (112)
22 PLN02336 phosphoethanolamine N 99.5 4.8E-13 1E-17 142.6 16.9 103 217-322 267-373 (475)
23 TIGR02072 BioC biotin biosynth 99.5 2.3E-13 5E-18 130.4 13.1 102 218-321 36-138 (240)
24 PLN02490 MPBQ/MSBQ methyltrans 99.5 6.3E-13 1.4E-17 135.4 16.8 143 218-362 115-263 (340)
25 PRK08317 hypothetical protein; 99.5 4.3E-13 9.3E-18 128.3 14.6 117 195-320 6-126 (241)
26 PRK15068 tRNA mo(5)U34 methylt 99.5 5.1E-13 1.1E-17 135.7 15.7 99 218-320 124-228 (322)
27 PF13847 Methyltransf_31: Meth 99.5 2.7E-13 5.8E-18 122.5 11.3 102 217-320 4-112 (152)
28 PRK11036 putative S-adenosyl-L 99.5 3.9E-13 8.5E-18 131.9 12.4 100 218-321 46-152 (255)
29 PRK11088 rrmA 23S rRNA methylt 99.5 4.7E-13 1E-17 132.7 12.8 96 218-321 87-184 (272)
30 PRK15451 tRNA cmo(5)U34 methyl 99.5 9.3E-13 2E-17 128.8 14.5 102 218-321 58-167 (247)
31 PRK12335 tellurite resistance 99.4 1.7E-12 3.6E-17 129.8 15.2 98 218-319 122-224 (287)
32 PF13649 Methyltransf_25: Meth 99.4 1.6E-13 3.5E-18 115.4 6.4 93 220-312 1-101 (101)
33 PRK11873 arsM arsenite S-adeno 99.4 2.1E-12 4.5E-17 127.7 14.8 103 218-321 79-186 (272)
34 TIGR00452 methyltransferase, p 99.4 1.3E-12 2.8E-17 132.0 13.1 99 218-320 123-227 (314)
35 PF02353 CMAS: Mycolic acid cy 99.4 1E-12 2.2E-17 130.5 12.1 157 195-364 49-226 (273)
36 smart00828 PKS_MT Methyltransf 99.4 2.8E-12 6.2E-17 122.8 13.7 133 219-354 2-143 (224)
37 PF08242 Methyltransf_12: Meth 99.4 9.4E-14 2E-18 116.1 3.0 92 221-314 1-99 (99)
38 COG4106 Tam Trans-aconitate me 99.4 1.7E-12 3.7E-17 122.0 10.8 123 218-352 32-154 (257)
39 COG2230 Cfa Cyclopropane fatty 99.4 5.7E-12 1.2E-16 124.5 14.6 118 193-323 57-181 (283)
40 KOG1270 Methyltransferases [Co 99.4 6.6E-13 1.4E-17 128.2 7.1 99 218-323 91-200 (282)
41 smart00138 MeTrc Methyltransfe 99.4 3E-12 6.5E-17 126.6 11.3 103 217-319 100-243 (264)
42 PRK11705 cyclopropane fatty ac 99.4 5.6E-12 1.2E-16 131.0 13.8 114 195-321 154-270 (383)
43 PRK00107 gidB 16S rRNA methylt 99.4 2.2E-11 4.8E-16 114.5 16.4 116 218-353 47-167 (187)
44 TIGR03587 Pse_Me-ase pseudamin 99.4 7.4E-12 1.6E-16 119.2 13.1 100 218-321 45-145 (204)
45 PRK06922 hypothetical protein; 99.4 3.4E-12 7.3E-17 138.1 11.6 102 218-320 420-539 (677)
46 PRK00216 ubiE ubiquinone/menaq 99.4 4.7E-11 1E-15 114.6 18.2 103 218-321 53-161 (239)
47 PF07021 MetW: Methionine bios 99.3 1.7E-11 3.7E-16 114.4 13.1 99 218-322 15-113 (193)
48 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.5E-11 5.5E-16 115.2 14.4 102 218-320 41-145 (223)
49 PF03848 TehB: Tellurite resis 99.3 2.7E-11 5.9E-16 113.9 12.7 98 218-319 32-134 (192)
50 TIGR03840 TMPT_Se_Te thiopurin 99.3 8.6E-11 1.9E-15 112.7 15.4 99 218-319 36-153 (213)
51 TIGR00537 hemK_rel_arch HemK-r 99.3 1.3E-10 2.8E-15 108.0 16.1 120 218-354 21-164 (179)
52 TIGR02021 BchM-ChlM magnesium 99.3 7.3E-11 1.6E-15 113.0 14.7 113 193-317 38-157 (219)
53 KOG1541 Predicted protein carb 99.3 5.2E-11 1.1E-15 112.3 13.2 134 194-348 34-180 (270)
54 PRK06202 hypothetical protein; 99.3 6.4E-11 1.4E-15 114.5 13.9 102 217-320 61-168 (232)
55 PF05401 NodS: Nodulation prot 99.3 4.8E-11 1E-15 111.6 12.1 98 218-319 45-147 (201)
56 PLN02336 phosphoethanolamine N 99.3 3E-11 6.6E-16 128.8 11.8 101 218-321 39-145 (475)
57 PRK00121 trmB tRNA (guanine-N( 99.2 5.5E-11 1.2E-15 113.0 12.2 101 218-320 42-158 (202)
58 TIGR02469 CbiT precorrin-6Y C5 99.2 1.3E-10 2.8E-15 100.0 13.4 96 218-318 21-122 (124)
59 TIGR00138 gidB 16S rRNA methyl 99.2 2.4E-10 5.3E-15 106.8 15.9 95 218-319 44-143 (181)
60 PF08003 Methyltransf_9: Prote 99.2 1.4E-10 3.1E-15 115.0 14.0 143 198-352 105-264 (315)
61 PRK11188 rrmJ 23S rRNA methylt 99.2 9.3E-11 2E-15 112.1 11.6 97 218-321 53-168 (209)
62 PRK13944 protein-L-isoaspartat 99.2 1.6E-10 3.4E-15 110.0 13.1 109 196-319 60-174 (205)
63 PLN02585 magnesium protoporphy 99.2 4.8E-10 1E-14 113.5 17.2 93 218-317 146-249 (315)
64 TIGR02716 C20_methyl_CrtF C-20 99.2 3.9E-10 8.5E-15 113.6 16.6 101 218-322 151-258 (306)
65 TIGR00091 tRNA (guanine-N(7)-) 99.2 2.1E-10 4.5E-15 108.2 12.5 100 218-319 18-133 (194)
66 PRK05134 bifunctional 3-demeth 99.2 2.8E-10 6.1E-15 109.8 13.1 99 218-320 50-153 (233)
67 COG4976 Predicted methyltransf 99.1 6.1E-11 1.3E-15 112.4 6.5 136 217-356 126-266 (287)
68 TIGR00406 prmA ribosomal prote 99.1 1.2E-09 2.6E-14 109.4 15.9 97 218-320 161-261 (288)
69 PRK13942 protein-L-isoaspartat 99.1 6.1E-10 1.3E-14 106.6 13.2 111 194-319 62-177 (212)
70 PRK08287 cobalt-precorrin-6Y C 99.1 1.8E-09 3.9E-14 101.0 16.0 115 218-351 33-152 (187)
71 TIGR02081 metW methionine bios 99.1 3.8E-10 8.3E-15 106.2 11.5 94 218-319 15-110 (194)
72 PLN03075 nicotianamine synthas 99.1 7.1E-10 1.5E-14 110.7 13.4 102 217-319 124-234 (296)
73 PRK04266 fibrillarin; Provisio 99.1 2.1E-09 4.6E-14 104.0 16.3 129 218-354 74-209 (226)
74 TIGR00080 pimt protein-L-isoas 99.1 1E-09 2.2E-14 105.2 13.7 109 196-319 65-178 (215)
75 PF03141 Methyltransf_29: Puta 99.1 3.9E-10 8.5E-15 118.0 11.6 126 216-356 365-492 (506)
76 TIGR01983 UbiG ubiquinone bios 99.1 5.3E-10 1.1E-14 106.9 11.6 101 217-321 46-152 (224)
77 PRK13255 thiopurine S-methyltr 99.1 9.6E-10 2.1E-14 105.8 13.2 97 218-317 39-154 (218)
78 PF05175 MTS: Methyltransferas 99.1 2.8E-09 6E-14 98.5 15.7 100 218-319 33-141 (170)
79 KOG3010 Methyltransferase [Gen 99.1 1.9E-10 4.1E-15 110.1 7.1 98 217-319 34-138 (261)
80 PRK07580 Mg-protoporphyrin IX 99.1 1.1E-09 2.4E-14 105.0 12.7 91 218-314 65-162 (230)
81 PRK09489 rsmC 16S ribosomal RN 99.1 1.2E-09 2.5E-14 112.0 13.5 99 218-319 198-304 (342)
82 PRK14968 putative methyltransf 99.1 5.4E-09 1.2E-13 96.8 16.3 119 218-352 25-170 (188)
83 PRK00377 cbiT cobalt-precorrin 99.1 5.3E-09 1.1E-13 98.9 16.2 117 218-350 42-165 (198)
84 PRK14967 putative methyltransf 99.1 2E-09 4.4E-14 103.6 13.4 100 218-320 38-161 (223)
85 PRK00517 prmA ribosomal protei 99.1 5.8E-09 1.3E-13 102.3 16.4 113 218-354 121-237 (250)
86 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.6E-09 3.4E-14 112.0 12.8 100 218-319 124-236 (390)
87 TIGR01177 conserved hypothetic 99.0 3.7E-09 8E-14 107.8 14.6 100 218-320 184-296 (329)
88 PF13659 Methyltransf_26: Meth 99.0 8E-10 1.7E-14 94.6 8.2 100 218-319 2-116 (117)
89 PTZ00146 fibrillarin; Provisio 99.0 5.3E-09 1.1E-13 104.2 14.7 130 218-354 134-270 (293)
90 TIGR03438 probable methyltrans 99.0 3.2E-09 7E-14 107.0 13.2 104 218-321 65-180 (301)
91 PRK15001 SAM-dependent 23S rib 99.0 3E-09 6.6E-14 110.1 13.2 99 218-318 230-340 (378)
92 PLN02232 ubiquinone biosynthes 99.0 1E-09 2.2E-14 100.5 8.6 76 245-321 1-84 (160)
93 PF05148 Methyltransf_8: Hypot 99.0 3.6E-09 7.8E-14 99.9 11.7 114 218-357 74-187 (219)
94 cd02440 AdoMet_MTases S-adenos 99.0 4.9E-09 1.1E-13 85.0 10.4 97 219-317 1-103 (107)
95 TIGR03534 RF_mod_PrmC protein- 99.0 1.6E-08 3.5E-13 98.2 15.7 120 218-352 89-238 (251)
96 COG2264 PrmA Ribosomal protein 99.0 1E-08 2.2E-13 102.3 14.0 116 218-353 164-286 (300)
97 TIGR00438 rrmJ cell division p 98.9 7.9E-09 1.7E-13 96.8 12.0 96 218-319 34-147 (188)
98 KOG2361 Predicted methyltransf 98.9 5.5E-09 1.2E-13 100.1 10.3 124 194-323 55-188 (264)
99 PRK07402 precorrin-6B methylas 98.9 1.8E-08 3.8E-13 95.0 13.6 108 199-320 31-144 (196)
100 COG2813 RsmC 16S RNA G1207 met 98.9 7.4E-09 1.6E-13 102.9 11.3 117 192-319 142-267 (300)
101 PRK00312 pcm protein-L-isoaspa 98.9 1.7E-08 3.7E-13 96.2 13.4 106 196-319 66-176 (212)
102 PF06325 PrmA: Ribosomal prote 98.9 1.1E-08 2.4E-13 102.6 11.9 117 218-355 163-283 (295)
103 KOG1271 Methyltransferases [Ge 98.9 1.1E-08 2.3E-13 94.3 10.0 103 218-321 69-184 (227)
104 TIGR03533 L3_gln_methyl protei 98.9 9.3E-08 2E-12 95.7 16.9 100 218-319 123-252 (284)
105 PRK13256 thiopurine S-methyltr 98.8 4E-08 8.6E-13 95.0 13.4 100 218-320 45-165 (226)
106 PHA03411 putative methyltransf 98.8 8.6E-08 1.9E-12 94.8 14.9 128 218-353 66-212 (279)
107 TIGR00563 rsmB ribosomal RNA s 98.8 3.9E-08 8.4E-13 103.8 13.4 116 198-322 228-372 (426)
108 PRK10901 16S rRNA methyltransf 98.8 3.8E-08 8.3E-13 103.9 13.3 103 218-321 246-375 (427)
109 PRK09328 N5-glutamine S-adenos 98.8 1.1E-07 2.5E-12 93.7 15.7 99 218-318 110-238 (275)
110 PRK14966 unknown domain/N5-glu 98.8 1.2E-07 2.5E-12 98.9 16.3 121 218-352 253-402 (423)
111 PRK13943 protein-L-isoaspartat 98.8 5.3E-08 1.1E-12 99.0 13.5 109 195-318 67-180 (322)
112 COG4123 Predicted O-methyltran 98.8 8.4E-08 1.8E-12 93.5 13.9 102 218-320 46-172 (248)
113 PRK14901 16S rRNA methyltransf 98.8 1.1E-07 2.5E-12 100.5 16.1 104 218-321 254-387 (434)
114 smart00650 rADc Ribosomal RNA 98.8 3.5E-08 7.7E-13 90.8 10.7 95 218-319 15-114 (169)
115 KOG2940 Predicted methyltransf 98.8 5.6E-09 1.2E-13 99.2 5.1 138 217-357 73-229 (325)
116 TIGR00536 hemK_fam HemK family 98.8 9.9E-08 2.1E-12 95.4 14.1 100 218-319 116-245 (284)
117 PRK14904 16S rRNA methyltransf 98.8 1.5E-07 3.2E-12 100.0 15.4 104 218-322 252-381 (445)
118 PF01135 PCMT: Protein-L-isoas 98.8 4.8E-08 1E-12 93.4 10.6 112 194-320 58-174 (209)
119 PF05219 DREV: DREV methyltran 98.8 6.9E-08 1.5E-12 94.1 11.6 95 217-319 95-189 (265)
120 PF00891 Methyltransf_2: O-met 98.7 7E-08 1.5E-12 93.7 11.4 102 217-324 101-205 (241)
121 PF03291 Pox_MCEL: mRNA cappin 98.7 3.8E-08 8.3E-13 100.3 9.4 103 217-321 63-189 (331)
122 PRK04457 spermidine synthase; 98.7 1.3E-07 2.8E-12 93.6 12.2 117 195-319 52-178 (262)
123 COG2519 GCD14 tRNA(1-methylade 98.7 3.5E-07 7.6E-12 88.8 14.5 108 199-321 85-198 (256)
124 PF06080 DUF938: Protein of un 98.7 2.7E-07 5.9E-12 87.4 13.5 132 219-353 28-190 (204)
125 PRK11805 N5-glutamine S-adenos 98.7 1.1E-07 2.3E-12 96.3 11.5 100 218-319 135-264 (307)
126 PRK00811 spermidine synthase; 98.7 1.4E-07 3E-12 94.4 12.2 101 217-319 77-192 (283)
127 PRK14903 16S rRNA methyltransf 98.7 1.5E-07 3.2E-12 99.5 13.0 105 218-322 239-370 (431)
128 KOG3045 Predicted RNA methylas 98.7 1.2E-07 2.7E-12 91.6 10.9 113 217-357 181-293 (325)
129 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.3E-07 2.8E-12 93.6 11.0 104 218-321 73-202 (264)
130 PRK14902 16S rRNA methyltransf 98.7 3.8E-07 8.3E-12 96.8 15.2 103 218-321 252-382 (444)
131 PRK01581 speE spermidine synth 98.7 4.6E-07 1E-11 92.8 15.1 101 217-319 151-269 (374)
132 COG2518 Pcm Protein-L-isoaspar 98.7 2.8E-07 6E-12 87.5 12.5 107 194-319 58-170 (209)
133 PF05724 TPMT: Thiopurine S-me 98.7 6.3E-07 1.4E-11 86.3 14.9 132 218-354 39-189 (218)
134 TIGR03704 PrmC_rel_meth putati 98.6 7.4E-07 1.6E-11 87.6 15.5 101 218-319 88-217 (251)
135 PF05891 Methyltransf_PK: AdoM 98.6 1E-07 2.2E-12 90.8 8.7 139 216-356 55-202 (218)
136 PF01739 CheR: CheR methyltran 98.6 3.1E-07 6.8E-12 87.0 10.8 104 216-319 31-176 (196)
137 PRK01544 bifunctional N5-gluta 98.6 5.4E-07 1.2E-11 97.1 14.0 119 218-351 140-289 (506)
138 PHA03412 putative methyltransf 98.6 3.3E-07 7.1E-12 88.8 10.6 95 218-313 51-158 (241)
139 COG2242 CobL Precorrin-6B meth 98.6 9.9E-07 2.1E-11 82.2 13.3 107 198-319 24-136 (187)
140 KOG1975 mRNA cap methyltransfe 98.6 2E-07 4.3E-12 92.8 9.1 103 217-321 118-240 (389)
141 PF02390 Methyltransf_4: Putat 98.6 9.6E-07 2.1E-11 83.6 13.2 100 218-319 19-134 (195)
142 PRK03612 spermidine synthase; 98.5 1.3E-06 2.8E-11 94.5 15.1 122 217-348 298-437 (521)
143 TIGR00417 speE spermidine synt 98.5 6.6E-07 1.4E-11 88.8 10.8 101 217-319 73-187 (270)
144 COG0220 Predicted S-adenosylme 98.5 4.3E-07 9.2E-12 87.9 9.1 100 218-319 50-165 (227)
145 PRK10611 chemotaxis methyltran 98.5 1.1E-06 2.3E-11 88.0 11.9 101 218-318 117-262 (287)
146 PLN02366 spermidine synthase 98.5 1.1E-06 2.4E-11 88.9 12.0 101 217-319 92-207 (308)
147 PLN02781 Probable caffeoyl-CoA 98.5 1.2E-06 2.6E-11 85.3 11.8 98 218-319 70-179 (234)
148 COG3963 Phospholipid N-methylt 98.5 1.2E-06 2.7E-11 79.8 10.3 119 194-320 34-158 (194)
149 PRK13168 rumA 23S rRNA m(5)U19 98.4 2.1E-06 4.6E-11 91.1 13.2 110 195-320 284-402 (443)
150 PF08704 GCD14: tRNA methyltra 98.4 4.3E-06 9.3E-11 81.9 13.1 111 197-321 29-149 (247)
151 COG2890 HemK Methylase of poly 98.4 5E-06 1.1E-10 83.1 13.2 113 219-347 113-254 (280)
152 PRK03522 rumB 23S rRNA methylu 98.4 3.4E-06 7.3E-11 85.6 12.0 97 218-321 175-277 (315)
153 COG0500 SmtA SAM-dependent met 98.3 6E-06 1.3E-10 69.6 11.5 101 220-323 52-160 (257)
154 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.8E-06 3.9E-11 96.7 9.7 100 218-319 540-657 (702)
155 KOG2899 Predicted methyltransf 98.3 2.9E-06 6.3E-11 81.6 9.6 101 217-318 59-209 (288)
156 PRK00274 ksgA 16S ribosomal RN 98.3 2.6E-06 5.6E-11 84.7 9.4 84 194-288 28-113 (272)
157 TIGR00478 tly hemolysin TlyA f 98.3 1.1E-05 2.4E-10 78.2 13.2 123 218-352 77-214 (228)
158 PRK15128 23S rRNA m(5)C1962 me 98.3 1.2E-05 2.5E-10 84.2 14.2 100 218-319 222-340 (396)
159 PRK10909 rsmD 16S rRNA m(2)G96 98.3 1.6E-05 3.5E-10 75.5 13.7 99 218-320 55-161 (199)
160 PRK14896 ksgA 16S ribosomal RN 98.3 5.1E-06 1.1E-10 81.9 10.5 82 194-288 15-99 (258)
161 COG2521 Predicted archaeal met 98.3 4.7E-06 1E-10 79.9 9.6 147 194-353 118-275 (287)
162 PF10294 Methyltransf_16: Puta 98.2 1.3E-05 2.8E-10 74.4 12.0 102 217-321 46-159 (173)
163 PF07942 N2227: N2227-like pro 98.2 2.5E-05 5.3E-10 77.4 14.0 135 217-355 57-242 (270)
164 PF01596 Methyltransf_3: O-met 98.2 1E-05 2.2E-10 77.3 10.5 99 218-320 47-157 (205)
165 PRK04148 hypothetical protein; 98.2 1.4E-05 3E-10 71.1 10.4 91 218-318 18-109 (134)
166 PLN02476 O-methyltransferase 98.2 1.4E-05 3.1E-10 79.5 11.6 99 217-319 119-229 (278)
167 TIGR00479 rumA 23S rRNA (uraci 98.2 1.5E-05 3.2E-10 84.3 12.2 95 218-319 294-397 (431)
168 COG1352 CheR Methylase of chem 98.2 1.2E-05 2.5E-10 79.7 10.7 103 217-319 97-242 (268)
169 KOG1499 Protein arginine N-met 98.2 6.1E-06 1.3E-10 83.4 8.7 95 218-315 62-164 (346)
170 KOG1661 Protein-L-isoaspartate 98.1 1.2E-05 2.5E-10 76.0 9.5 95 218-319 84-194 (237)
171 TIGR00755 ksgA dimethyladenosi 98.1 2.3E-05 4.9E-10 77.0 12.1 82 194-288 15-102 (253)
172 COG4122 Predicted O-methyltran 98.1 1.5E-05 3.2E-10 76.7 10.0 100 217-320 60-168 (219)
173 PLN02672 methionine S-methyltr 98.1 4.2E-05 9.2E-10 88.3 14.2 100 218-319 120-279 (1082)
174 TIGR02085 meth_trns_rumB 23S r 98.1 2.7E-05 5.8E-10 81.0 11.3 95 218-319 235-335 (374)
175 COG2263 Predicted RNA methylas 98.1 3.1E-05 6.6E-10 72.3 10.2 114 218-353 47-166 (198)
176 COG1041 Predicted DNA modifica 98.0 3.7E-05 8E-10 78.2 11.3 114 195-319 184-311 (347)
177 PRK01544 bifunctional N5-gluta 98.0 1.3E-05 2.8E-10 86.5 8.6 105 213-319 344-463 (506)
178 PF05185 PRMT5: PRMT5 arginine 98.0 3E-05 6.4E-10 82.4 10.4 97 217-315 187-294 (448)
179 PTZ00338 dimethyladenosine tra 98.0 2.9E-05 6.3E-10 78.2 9.4 86 194-293 22-113 (294)
180 PRK11727 23S rRNA mA1618 methy 98.0 8E-05 1.7E-09 75.8 12.5 96 192-288 90-197 (321)
181 PLN02823 spermine synthase 97.9 5.8E-05 1.3E-09 77.3 11.0 100 217-318 104-220 (336)
182 KOG1331 Predicted methyltransf 97.9 6.5E-06 1.4E-10 81.1 3.6 101 218-324 47-149 (293)
183 KOG1269 SAM-dependent methyltr 97.9 1.3E-05 2.7E-10 82.8 5.9 102 218-322 112-219 (364)
184 KOG2904 Predicted methyltransf 97.9 0.00013 2.9E-09 71.5 11.5 122 194-321 131-288 (328)
185 PF01170 UPF0020: Putative RNA 97.9 0.00011 2.3E-09 68.7 10.6 100 218-318 30-151 (179)
186 PLN02589 caffeoyl-CoA O-methyl 97.9 6.2E-05 1.3E-09 73.9 9.2 97 218-318 81-190 (247)
187 PF09243 Rsm22: Mitochondrial 97.9 0.00021 4.5E-09 71.3 13.1 125 217-353 34-166 (274)
188 TIGR00095 RNA methyltransferas 97.8 0.0004 8.6E-09 65.5 13.2 98 218-319 51-160 (189)
189 COG0421 SpeE Spermidine syntha 97.8 0.00016 3.6E-09 72.2 10.5 101 217-319 77-191 (282)
190 KOG3178 Hydroxyindole-O-methyl 97.8 0.00013 2.9E-09 73.9 9.8 99 217-323 178-280 (342)
191 PRK00536 speE spermidine synth 97.7 0.00039 8.4E-09 68.8 12.4 93 216-320 72-173 (262)
192 KOG3201 Uncharacterized conser 97.7 3E-05 6.6E-10 70.4 3.5 135 218-364 31-176 (201)
193 KOG1500 Protein arginine N-met 97.7 0.00018 4E-09 72.2 9.1 97 217-317 178-281 (517)
194 PRK11933 yebU rRNA (cytosine-C 97.7 0.00051 1.1E-08 73.4 13.2 103 218-321 115-245 (470)
195 PF02527 GidB: rRNA small subu 97.7 0.00024 5.2E-09 66.8 9.4 94 219-319 51-149 (184)
196 KOG0820 Ribosomal RNA adenine 97.6 0.00032 6.8E-09 68.9 9.9 88 187-287 37-130 (315)
197 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00036 7.8E-09 72.8 11.1 97 218-320 59-160 (382)
198 PF12147 Methyltransf_20: Puta 97.6 0.0007 1.5E-08 67.3 12.3 139 217-356 136-299 (311)
199 PF11968 DUF3321: Putative met 97.6 0.00048 1E-08 65.8 9.9 120 218-355 53-181 (219)
200 COG0030 KsgA Dimethyladenosine 97.5 0.00051 1.1E-08 67.7 9.9 88 194-293 16-107 (259)
201 KOG3191 Predicted N6-DNA-methy 97.4 0.0038 8.3E-08 58.1 13.8 105 217-322 44-172 (209)
202 PF01728 FtsJ: FtsJ-like methy 97.4 0.00028 6.1E-09 65.4 6.5 97 217-320 24-141 (181)
203 KOG3987 Uncharacterized conser 97.4 8.7E-05 1.9E-09 70.1 2.4 124 181-318 83-207 (288)
204 TIGR02143 trmA_only tRNA (urac 97.4 0.00071 1.5E-08 69.9 9.0 93 218-319 199-312 (353)
205 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.0017 3.8E-08 65.4 11.6 125 187-320 26-185 (311)
206 PF01564 Spermine_synth: Sperm 97.3 0.00086 1.9E-08 65.8 9.0 101 217-319 77-192 (246)
207 PF02475 Met_10: Met-10+ like- 97.3 0.0012 2.6E-08 62.8 9.5 91 218-315 103-199 (200)
208 KOG2352 Predicted spermine/spe 97.3 0.0017 3.8E-08 68.5 11.4 99 219-319 51-162 (482)
209 KOG3420 Predicted RNA methylas 97.3 0.00059 1.3E-08 61.2 6.2 69 218-288 50-122 (185)
210 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00095 2.1E-08 69.2 8.8 93 218-319 208-321 (362)
211 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.00095 2.1E-08 65.8 8.3 136 217-354 57-238 (256)
212 KOG1663 O-methyltransferase [S 97.3 0.0019 4.2E-08 62.1 10.0 97 218-318 75-183 (237)
213 TIGR03439 methyl_EasF probable 97.2 0.004 8.6E-08 63.5 12.4 103 218-320 78-199 (319)
214 COG0293 FtsJ 23S rRNA methylas 97.2 0.0022 4.9E-08 61.0 9.3 99 217-321 46-162 (205)
215 PRK00050 16S rRNA m(4)C1402 me 97.1 0.0013 2.8E-08 66.3 7.8 87 196-290 7-100 (296)
216 KOG2915 tRNA(1-methyladenosine 97.1 0.012 2.5E-07 58.2 13.9 110 197-320 94-212 (314)
217 COG1092 Predicted SAM-dependen 97.1 0.0023 5E-08 66.8 9.7 102 218-321 219-339 (393)
218 TIGR02987 met_A_Alw26 type II 97.1 0.0045 9.8E-08 67.2 12.4 71 217-287 32-119 (524)
219 COG1189 Predicted rRNA methyla 97.1 0.0059 1.3E-07 59.2 11.4 130 217-353 80-222 (245)
220 PF08123 DOT1: Histone methyla 97.1 0.0019 4.2E-08 61.7 8.1 121 188-319 21-159 (205)
221 PF03602 Cons_hypoth95: Conser 97.0 0.0025 5.4E-08 59.8 8.4 117 194-321 26-156 (183)
222 KOG1709 Guanidinoacetate methy 97.0 0.0044 9.5E-08 59.2 9.3 120 188-319 82-207 (271)
223 PRK11760 putative 23S rRNA C24 97.0 0.0058 1.3E-07 62.5 10.8 92 217-318 212-305 (357)
224 PF00398 RrnaAD: Ribosomal RNA 97.0 0.0042 9.1E-08 61.4 9.7 106 190-310 12-123 (262)
225 COG0357 GidB Predicted S-adeno 96.8 0.009 2E-07 57.4 10.3 119 217-352 68-192 (215)
226 COG2520 Predicted methyltransf 96.8 0.02 4.3E-07 58.7 13.3 118 218-348 190-313 (341)
227 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0042 9E-08 64.7 8.5 99 218-321 46-150 (374)
228 PF10672 Methyltrans_SAM: S-ad 96.8 0.0028 6E-08 63.6 6.7 101 218-320 125-240 (286)
229 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.012 2.5E-07 66.4 12.2 103 218-320 192-349 (702)
230 PF03059 NAS: Nicotianamine sy 96.7 0.018 3.8E-07 57.5 11.7 102 217-319 121-231 (276)
231 COG2265 TrmA SAM-dependent met 96.7 0.012 2.6E-07 62.3 10.9 112 194-320 279-398 (432)
232 COG0742 N6-adenine-specific me 96.7 0.037 8E-07 52.0 12.7 119 193-321 26-157 (187)
233 PF01269 Fibrillarin: Fibrilla 96.5 0.014 3E-07 56.3 8.9 100 218-320 75-180 (229)
234 COG4798 Predicted methyltransf 96.5 0.014 3E-07 55.0 8.5 135 218-354 50-204 (238)
235 COG4627 Uncharacterized protei 96.4 0.0025 5.4E-08 57.8 3.3 53 271-323 38-91 (185)
236 PF13679 Methyltransf_32: Meth 96.3 0.013 2.9E-07 52.2 7.0 42 217-260 26-72 (141)
237 KOG2798 Putative trehalase [Ca 96.2 0.036 7.7E-07 55.8 10.4 152 195-354 133-336 (369)
238 COG3897 Predicted methyltransf 96.2 0.02 4.3E-07 54.0 8.0 98 218-321 81-182 (218)
239 COG0144 Sun tRNA and rRNA cyto 96.1 0.091 2E-06 54.4 13.4 106 218-323 158-293 (355)
240 PF04672 Methyltransf_19: S-ad 96.0 0.047 1E-06 54.1 10.0 104 216-321 68-193 (267)
241 PF04816 DUF633: Family of unk 96.0 0.15 3.2E-06 48.8 13.0 116 220-354 1-123 (205)
242 PF09445 Methyltransf_15: RNA 95.9 0.011 2.4E-07 54.4 4.7 66 219-287 2-76 (163)
243 COG4262 Predicted spermidine s 95.8 0.06 1.3E-06 55.3 9.8 105 217-323 290-412 (508)
244 PF13578 Methyltransf_24: Meth 95.8 0.0035 7.6E-08 52.7 0.9 96 221-318 1-105 (106)
245 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.026 5.7E-07 58.3 7.5 51 218-271 198-253 (352)
246 PLN02668 indole-3-acetate carb 95.7 0.11 2.5E-06 54.2 11.9 47 276-323 158-242 (386)
247 COG0116 Predicted N6-adenine-s 95.7 0.15 3.2E-06 53.0 12.3 127 188-319 167-345 (381)
248 COG5459 Predicted rRNA methyla 95.5 0.042 9.1E-07 56.0 7.5 105 217-321 114-228 (484)
249 TIGR01444 fkbM_fam methyltrans 95.5 0.024 5.2E-07 50.0 5.2 41 219-260 1-41 (143)
250 COG4076 Predicted RNA methylas 95.1 0.067 1.5E-06 50.2 7.0 93 218-316 34-133 (252)
251 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.8 0.17 3.6E-06 50.8 9.6 104 218-321 87-222 (283)
252 KOG3115 Methyltransferase-like 94.6 0.096 2.1E-06 49.8 6.5 42 218-260 62-103 (249)
253 COG1889 NOP1 Fibrillarin-like 94.4 1.4 3.1E-05 42.0 13.9 132 216-354 76-213 (231)
254 COG1064 AdhP Zn-dependent alco 94.4 0.11 2.5E-06 53.2 7.2 94 218-321 168-262 (339)
255 KOG2187 tRNA uracil-5-methyltr 93.8 0.091 2E-06 56.1 5.3 64 186-260 357-424 (534)
256 PF05971 Methyltransf_10: Prot 93.5 0.51 1.1E-05 47.7 9.9 94 192-289 81-186 (299)
257 PF07091 FmrO: Ribosomal RNA m 93.4 0.72 1.6E-05 45.3 10.3 129 217-350 106-239 (251)
258 TIGR00006 S-adenosyl-methyltra 93.1 0.47 1E-05 48.1 8.9 86 194-288 6-100 (305)
259 PF06962 rRNA_methylase: Putat 93.0 0.63 1.4E-05 41.8 8.6 97 243-346 1-113 (140)
260 COG0286 HsdM Type I restrictio 92.6 1.2 2.6E-05 48.2 11.9 119 195-321 173-329 (489)
261 PF03514 GRAS: GRAS domain fam 92.6 3.1 6.7E-05 43.4 14.6 105 218-323 112-248 (374)
262 PF04989 CmcI: Cephalosporin h 92.2 0.39 8.4E-06 45.9 6.6 101 218-320 34-149 (206)
263 cd08283 FDH_like_1 Glutathione 91.9 1.6 3.5E-05 45.2 11.5 100 218-320 186-308 (386)
264 PF03492 Methyltransf_7: SAM d 91.8 0.93 2E-05 46.6 9.4 106 217-323 17-188 (334)
265 KOG2793 Putative N2,N2-dimethy 91.7 1.5 3.4E-05 43.1 10.3 100 218-320 88-201 (248)
266 PF03269 DUF268: Caenorhabditi 91.3 0.15 3.3E-06 46.7 2.6 46 278-323 61-116 (177)
267 cd08254 hydroxyacyl_CoA_DH 6-h 91.1 1.7 3.7E-05 43.3 10.4 92 218-319 167-264 (338)
268 cd00315 Cyt_C5_DNA_methylase C 91.0 3.7 8E-05 40.9 12.5 126 219-353 2-141 (275)
269 PHA01634 hypothetical protein 90.2 1.5 3.3E-05 38.9 7.7 68 217-286 29-98 (156)
270 PF02005 TRM: N2,N2-dimethylgu 89.9 1.8 4E-05 45.2 9.5 134 182-321 14-157 (377)
271 PF06859 Bin3: Bicoid-interact 89.8 0.2 4.4E-06 43.0 2.0 39 280-319 1-45 (110)
272 PRK09880 L-idonate 5-dehydroge 89.4 2.3 4.9E-05 43.2 9.7 93 218-319 171-267 (343)
273 PRK13699 putative methylase; P 89.2 0.98 2.1E-05 43.8 6.5 51 298-365 52-102 (227)
274 KOG1122 tRNA and rRNA cytosine 89.0 3.7 8E-05 43.2 10.8 108 215-323 240-376 (460)
275 PF00107 ADH_zinc_N: Zinc-bind 88.8 0.83 1.8E-05 39.2 5.2 86 226-321 1-92 (130)
276 KOG1099 SAM-dependent methyltr 88.7 0.57 1.2E-05 45.5 4.3 97 217-319 42-164 (294)
277 KOG2920 Predicted methyltransf 88.3 0.39 8.4E-06 47.9 3.0 128 186-321 91-237 (282)
278 KOG0822 Protein kinase inhibit 88.3 1.6 3.4E-05 47.2 7.6 122 194-317 346-477 (649)
279 KOG1562 Spermidine synthase [A 87.9 1.3 2.8E-05 44.5 6.4 102 216-319 121-237 (337)
280 KOG2539 Mitochondrial/chloropl 87.9 0.94 2E-05 48.1 5.7 105 217-322 201-319 (491)
281 KOG1596 Fibrillarin and relate 87.6 6.9 0.00015 38.5 10.9 131 187-324 128-267 (317)
282 PRK09424 pntA NAD(P) transhydr 87.6 4.3 9.2E-05 44.2 10.7 101 216-319 164-286 (509)
283 PF10354 DUF2431: Domain of un 87.4 8.1 0.00018 35.6 11.0 120 223-353 3-150 (166)
284 COG2384 Predicted SAM-dependen 87.3 18 0.0004 35.0 13.6 130 196-354 6-142 (226)
285 KOG2730 Methylase [General fun 86.0 0.84 1.8E-05 44.1 3.8 67 218-287 96-172 (263)
286 PF01795 Methyltransf_5: MraW 84.8 5.2 0.00011 40.7 9.0 57 195-260 7-63 (310)
287 COG0275 Predicted S-adenosylme 84.7 5.2 0.00011 40.5 8.8 88 192-287 7-103 (314)
288 cd05188 MDR Medium chain reduc 84.3 8.8 0.00019 36.4 10.2 94 218-321 136-235 (271)
289 TIGR02822 adh_fam_2 zinc-bindi 84.2 11 0.00023 38.2 11.2 88 218-319 167-255 (329)
290 KOG1501 Arginine N-methyltrans 84.0 2.3 4.9E-05 45.0 6.1 66 191-260 43-108 (636)
291 PF07757 AdoMet_MTase: Predict 84.0 1.4 3E-05 37.9 3.7 30 217-249 59-88 (112)
292 KOG4589 Cell division protein 83.2 1.7 3.6E-05 41.1 4.3 99 217-321 70-187 (232)
293 cd08245 CAD Cinnamyl alcohol d 82.2 15 0.00033 36.5 11.3 93 218-319 164-257 (330)
294 TIGR02825 B4_12hDH leukotriene 81.8 19 0.00042 35.9 11.9 92 218-319 140-238 (325)
295 cd08232 idonate-5-DH L-idonate 81.5 11 0.00025 37.6 10.2 92 218-319 167-263 (339)
296 KOG0024 Sorbitol dehydrogenase 81.5 12 0.00026 38.4 9.9 97 218-322 171-277 (354)
297 COG3129 Predicted SAM-dependen 81.3 4 8.7E-05 39.8 6.2 96 191-289 55-162 (292)
298 COG4301 Uncharacterized conser 81.1 24 0.00053 34.9 11.5 103 217-322 79-197 (321)
299 COG3510 CmcI Cephalosporin hyd 80.7 9 0.00019 36.5 8.1 106 217-323 70-185 (237)
300 cd08234 threonine_DH_like L-th 79.9 18 0.00039 36.0 10.9 93 218-320 161-259 (334)
301 KOG2651 rRNA adenine N-6-methy 79.2 5.6 0.00012 41.5 6.9 41 216-258 153-193 (476)
302 cd08237 ribitol-5-phosphate_DH 78.9 10 0.00022 38.5 8.9 92 218-319 165-257 (341)
303 PF04445 SAM_MT: Putative SAM- 78.9 6.4 0.00014 38.5 6.9 81 198-287 63-158 (234)
304 PF01555 N6_N4_Mtase: DNA meth 78.1 8.2 0.00018 36.0 7.4 39 218-259 193-231 (231)
305 PF00145 DNA_methylase: C-5 cy 78.0 15 0.00032 36.5 9.6 125 219-354 2-141 (335)
306 PF01861 DUF43: Protein of unk 77.9 74 0.0016 31.3 15.6 166 218-402 46-222 (243)
307 cd08281 liver_ADH_like1 Zinc-d 77.6 14 0.00031 37.9 9.5 92 218-319 193-291 (371)
308 PRK10742 putative methyltransf 77.2 7.5 0.00016 38.3 6.9 51 198-257 76-126 (250)
309 cd08230 glucose_DH Glucose deh 76.6 16 0.00034 37.2 9.5 92 218-320 174-271 (355)
310 TIGR03451 mycoS_dep_FDH mycoth 76.6 17 0.00037 37.0 9.8 93 218-319 178-277 (358)
311 PRK11524 putative methyltransf 76.6 2.7 5.8E-05 42.0 3.7 43 276-318 23-80 (284)
312 PLN03154 putative allyl alcoho 75.4 30 0.00065 35.3 11.2 92 218-319 160-259 (348)
313 COG1063 Tdh Threonine dehydrog 75.0 19 0.00042 37.0 9.6 96 218-322 170-273 (350)
314 COG1867 TRM1 N2,N2-dimethylgua 74.8 11 0.00025 39.0 7.7 100 218-323 54-159 (380)
315 PRK01747 mnmC bifunctional tRN 74.6 8.5 0.00018 43.1 7.4 98 218-317 59-205 (662)
316 cd08239 THR_DH_like L-threonin 74.2 23 0.00049 35.6 9.8 94 218-320 165-264 (339)
317 COG1565 Uncharacterized conser 72.9 10 0.00022 39.3 6.8 43 218-260 79-128 (370)
318 KOG4058 Uncharacterized conser 72.9 13 0.00028 34.0 6.6 57 197-260 58-114 (199)
319 TIGR03366 HpnZ_proposed putati 72.7 24 0.00052 34.6 9.4 92 218-319 122-219 (280)
320 cd08255 2-desacetyl-2-hydroxye 72.0 23 0.00051 34.1 9.1 91 218-319 99-191 (277)
321 cd00401 AdoHcyase S-adenosyl-L 71.9 30 0.00064 36.8 10.3 86 218-320 203-291 (413)
322 COG0287 TyrA Prephenate dehydr 71.8 19 0.00041 36.1 8.4 89 218-314 4-94 (279)
323 cd08294 leukotriene_B4_DH_like 71.8 39 0.00084 33.4 10.8 91 218-319 145-242 (329)
324 TIGR01202 bchC 2-desacetyl-2-h 70.8 20 0.00042 35.9 8.4 85 218-319 146-232 (308)
325 PRK11524 putative methyltransf 70.5 14 0.0003 36.9 7.1 40 218-260 210-249 (284)
326 COG0604 Qor NADPH:quinone redu 70.1 23 0.00051 36.1 8.9 94 218-321 144-244 (326)
327 PLN02827 Alcohol dehydrogenase 69.8 38 0.00082 35.0 10.5 93 218-319 195-296 (378)
328 KOG2198 tRNA cytosine-5-methyl 69.7 24 0.00053 36.7 8.7 107 217-323 156-301 (375)
329 cd08261 Zn_ADH7 Alcohol dehydr 69.4 31 0.00068 34.4 9.6 92 218-319 161-259 (337)
330 TIGR00561 pntA NAD(P) transhyd 69.1 14 0.00031 40.2 7.3 96 217-315 164-281 (511)
331 TIGR03201 dearomat_had 6-hydro 68.4 30 0.00065 35.1 9.3 94 218-320 168-274 (349)
332 PF02636 Methyltransf_28: Puta 68.0 4.6 9.9E-05 39.5 3.1 43 218-260 20-69 (252)
333 TIGR00675 dcm DNA-methyltransf 67.9 36 0.00079 34.5 9.7 125 220-353 1-138 (315)
334 PLN02740 Alcohol dehydrogenase 67.6 36 0.00077 35.1 9.8 94 218-319 200-301 (381)
335 PRK13699 putative methylase; P 67.1 19 0.00041 34.8 7.1 40 218-260 165-204 (227)
336 PLN02586 probable cinnamyl alc 66.4 33 0.00072 35.1 9.2 93 218-319 185-279 (360)
337 cd08295 double_bond_reductase_ 65.7 59 0.0013 32.6 10.8 92 218-319 153-252 (338)
338 KOG1253 tRNA methyltransferase 64.3 5.3 0.00011 42.9 2.8 101 217-322 110-220 (525)
339 COG1255 Uncharacterized protei 63.6 24 0.00052 30.8 6.1 80 218-309 15-95 (129)
340 cd08285 NADP_ADH NADP(H)-depen 63.0 48 0.001 33.4 9.5 93 218-319 168-267 (351)
341 cd05278 FDH_like Formaldehyde 62.3 52 0.0011 32.8 9.6 92 218-318 169-267 (347)
342 TIGR02818 adh_III_F_hyde S-(hy 61.7 67 0.0014 32.9 10.4 94 218-319 187-288 (368)
343 KOG3924 Putative protein methy 60.9 74 0.0016 33.6 10.2 124 188-322 171-312 (419)
344 cd08236 sugar_DH NAD(P)-depend 60.7 55 0.0012 32.7 9.5 93 218-319 161-259 (343)
345 PLN02178 cinnamyl-alcohol dehy 60.1 34 0.00074 35.4 8.0 93 218-319 180-274 (375)
346 cd08242 MDR_like Medium chain 59.4 99 0.0021 30.5 10.9 88 218-318 157-245 (319)
347 PF02153 PDH: Prephenate dehyd 59.3 26 0.00057 34.4 6.6 78 230-317 1-78 (258)
348 cd05565 PTS_IIB_lactose PTS_II 59.1 22 0.00048 30.0 5.1 73 223-317 5-77 (99)
349 cd08300 alcohol_DH_class_III c 59.0 85 0.0018 32.0 10.6 93 218-319 188-289 (368)
350 cd08298 CAD2 Cinnamyl alcohol 58.2 1.2E+02 0.0026 29.9 11.4 88 218-319 169-257 (329)
351 COG0686 Ald Alanine dehydrogen 58.1 29 0.00064 35.5 6.6 98 217-317 168-267 (371)
352 cd05285 sorbitol_DH Sorbitol d 57.6 76 0.0016 31.8 9.9 92 218-319 164-266 (343)
353 TIGR02819 fdhA_non_GSH formald 57.3 85 0.0018 32.7 10.4 100 218-320 187-301 (393)
354 cd08277 liver_alcohol_DH_like 56.9 87 0.0019 31.9 10.3 95 218-320 186-288 (365)
355 PF11312 DUF3115: Protein of u 56.8 25 0.00055 35.8 6.0 105 218-322 88-246 (315)
356 cd08238 sorbose_phosphate_red 56.3 73 0.0016 33.2 9.8 93 218-317 177-287 (410)
357 cd05564 PTS_IIB_chitobiose_lic 55.3 34 0.00073 28.4 5.6 76 223-320 4-80 (96)
358 PF11899 DUF3419: Protein of u 54.6 18 0.00039 37.9 4.8 46 276-322 291-338 (380)
359 cd08231 MDR_TM0436_like Hypoth 53.5 1.5E+02 0.0033 29.8 11.4 93 218-320 179-282 (361)
360 PF05711 TylF: Macrocin-O-meth 53.5 87 0.0019 30.9 9.1 55 297-362 191-247 (248)
361 PF02254 TrkA_N: TrkA-N domain 53.3 25 0.00054 29.4 4.7 91 225-319 4-97 (116)
362 cd08279 Zn_ADH_class_III Class 53.2 1.1E+02 0.0024 31.0 10.4 92 218-319 184-283 (363)
363 cd05281 TDH Threonine dehydrog 53.0 1.1E+02 0.0024 30.5 10.2 92 218-319 165-263 (341)
364 TIGR00853 pts-lac PTS system, 52.0 37 0.0008 28.2 5.4 72 218-312 4-75 (95)
365 PF11599 AviRa: RRNA methyltra 52.0 31 0.00066 33.5 5.4 45 216-260 51-96 (246)
366 PRK07502 cyclohexadienyl dehyd 51.8 76 0.0017 31.8 8.7 89 218-315 7-97 (307)
367 PF09125 COX2-transmemb: Cytoc 51.8 15 0.00032 25.2 2.3 21 19-39 14-34 (38)
368 PRK03659 glutathione-regulated 51.7 50 0.0011 36.7 8.0 96 218-321 401-501 (601)
369 PF01555 N6_N4_Mtase: DNA meth 51.5 20 0.00044 33.3 4.2 53 297-364 35-88 (231)
370 cd08278 benzyl_alcohol_DH Benz 50.2 1.1E+02 0.0025 31.0 9.9 94 218-320 188-287 (365)
371 PLN02514 cinnamyl-alcohol dehy 50.2 1.1E+02 0.0023 31.3 9.6 94 218-320 182-277 (357)
372 cd08301 alcohol_DH_plants Plan 50.1 1E+02 0.0022 31.4 9.5 94 218-320 189-291 (369)
373 TIGR00497 hsdM type I restrict 50.1 2.1E+02 0.0047 30.9 12.3 103 218-320 219-357 (501)
374 PTZ00357 methyltransferase; Pr 50.0 72 0.0016 36.2 8.4 94 218-313 702-830 (1072)
375 COG0270 Dcm Site-specific DNA 49.3 1.6E+02 0.0034 30.1 10.6 123 218-349 4-141 (328)
376 cd08293 PTGR2 Prostaglandin re 49.3 95 0.0021 31.0 9.0 90 218-318 156-254 (345)
377 cd08233 butanediol_DH_like (2R 49.1 1.5E+02 0.0034 29.7 10.6 93 218-320 174-274 (351)
378 KOG4684 Uncharacterized conser 48.9 12 0.00027 35.8 2.2 38 2-39 191-228 (275)
379 TIGR00692 tdh L-threonine 3-de 48.6 1.4E+02 0.0031 29.8 10.2 92 218-319 163-262 (340)
380 PF07629 DUF1590: Protein of u 48.4 10 0.00022 24.5 1.1 19 117-135 4-22 (32)
381 COG2933 Predicted SAM-dependen 48.0 67 0.0014 32.2 7.1 85 217-311 212-296 (358)
382 cd08266 Zn_ADH_like1 Alcohol d 47.8 1.8E+02 0.0039 28.4 10.6 93 218-320 168-267 (342)
383 PRK10458 DNA cytosine methylas 47.5 2.2E+02 0.0047 30.8 11.6 41 218-260 89-129 (467)
384 PF12273 RCR: Chitin synthesis 47.3 8.1 0.00018 34.0 0.7 18 20-37 1-18 (130)
385 PF14740 DUF4471: Domain of un 46.9 37 0.0008 34.3 5.4 66 278-351 220-285 (289)
386 cd08263 Zn_ADH10 Alcohol dehyd 45.7 1.5E+02 0.0033 30.0 10.0 92 218-319 189-288 (367)
387 PRK10083 putative oxidoreducta 45.5 1.7E+02 0.0036 29.1 10.1 94 218-320 162-261 (339)
388 TIGR00518 alaDH alanine dehydr 44.9 38 0.00083 35.2 5.4 98 217-318 167-267 (370)
389 KOG0023 Alcohol dehydrogenase, 44.7 28 0.00061 35.7 4.1 91 225-322 191-283 (360)
390 PRK06522 2-dehydropantoate 2-r 44.2 2.2E+02 0.0047 28.0 10.5 93 219-319 2-101 (304)
391 PRK05708 2-dehydropantoate 2-r 44.1 1.8E+02 0.0039 29.2 10.0 96 218-321 3-107 (305)
392 PF05050 Methyltransf_21: Meth 44.0 39 0.00085 29.6 4.7 39 222-260 1-42 (167)
393 cd08241 QOR1 Quinone oxidoredu 43.1 2.4E+02 0.0052 27.1 10.6 91 218-319 141-239 (323)
394 PRK07417 arogenate dehydrogena 42.6 1.3E+02 0.0027 29.8 8.5 84 219-314 2-87 (279)
395 PRK03562 glutathione-regulated 42.4 67 0.0015 35.9 7.1 93 218-319 401-499 (621)
396 cd08243 quinone_oxidoreductase 41.9 2.5E+02 0.0055 27.1 10.6 89 218-319 144-239 (320)
397 PF03446 NAD_binding_2: NAD bi 41.8 1.4E+02 0.003 26.9 8.0 88 220-319 4-95 (163)
398 cd05283 CAD1 Cinnamyl alcohol 41.6 1.8E+02 0.004 29.0 9.7 93 218-319 171-264 (337)
399 PF03686 UPF0146: Uncharacteri 41.6 53 0.0012 29.1 4.9 88 218-319 15-103 (127)
400 PF02558 ApbA: Ketopantoate re 40.7 58 0.0013 28.5 5.3 92 221-320 2-103 (151)
401 cd08267 MDR1 Medium chain dehy 40.6 3E+02 0.0065 26.6 10.9 92 218-319 145-241 (319)
402 PRK12921 2-dehydropantoate 2-r 40.4 1.7E+02 0.0037 28.8 9.1 93 219-319 2-103 (305)
403 PRK10309 galactitol-1-phosphat 40.3 1.7E+02 0.0038 29.3 9.3 94 218-320 162-262 (347)
404 TIGR00936 ahcY adenosylhomocys 40.0 2.1E+02 0.0045 30.4 9.9 87 218-320 196-284 (406)
405 cd08240 6_hydroxyhexanoate_dh_ 39.6 2.2E+02 0.0048 28.5 9.9 90 218-319 177-275 (350)
406 cd08265 Zn_ADH3 Alcohol dehydr 39.5 1.9E+02 0.0042 29.7 9.6 93 218-319 205-308 (384)
407 PRK10669 putative cation:proto 38.4 84 0.0018 34.5 7.0 95 218-319 418-516 (558)
408 PRK05476 S-adenosyl-L-homocyst 37.7 2E+02 0.0044 30.7 9.5 88 218-321 213-302 (425)
409 PRK05396 tdh L-threonine 3-deh 37.6 2.4E+02 0.0052 28.1 9.8 93 218-320 165-265 (341)
410 cd08270 MDR4 Medium chain dehy 37.3 3E+02 0.0064 26.6 10.2 88 218-319 134-223 (305)
411 PRK09590 celB cellobiose phosp 36.6 1.1E+02 0.0025 25.8 6.1 78 219-319 3-83 (104)
412 PRK14756 hypothetical protein; 36.6 37 0.0008 21.9 2.2 23 18-40 4-26 (29)
413 PLN02702 L-idonate 5-dehydroge 36.1 4.4E+02 0.0095 26.6 11.6 93 218-319 183-286 (364)
414 KOG2912 Predicted DNA methylas 35.9 78 0.0017 32.6 5.6 64 193-260 82-145 (419)
415 cd05286 QOR2 Quinone oxidoredu 35.5 3.8E+02 0.0083 25.5 10.6 91 218-319 138-236 (320)
416 cd08260 Zn_ADH6 Alcohol dehydr 35.3 2.9E+02 0.0064 27.4 10.0 92 218-319 167-265 (345)
417 COG0541 Ffh Signal recognition 35.1 3.5E+02 0.0075 29.1 10.5 124 196-322 78-225 (451)
418 cd08296 CAD_like Cinnamyl alco 34.8 4.1E+02 0.0088 26.4 10.9 93 218-320 165-261 (333)
419 PLN02494 adenosylhomocysteinas 34.0 1.6E+02 0.0035 31.9 8.0 88 218-320 255-343 (477)
420 PRK15001 SAM-dependent 23S rib 33.8 2.7E+02 0.0058 29.3 9.5 94 219-320 47-144 (378)
421 cd08274 MDR9 Medium chain dehy 33.6 2.6E+02 0.0056 27.8 9.3 89 218-318 179-273 (350)
422 cd08286 FDH_like_ADH2 formalde 31.7 3.7E+02 0.008 26.7 10.1 93 218-319 168-267 (345)
423 cd01842 SGNH_hydrolase_like_5 31.5 84 0.0018 29.6 4.8 46 276-321 46-102 (183)
424 cd08246 crotonyl_coA_red croto 30.5 4.4E+02 0.0096 26.9 10.6 91 218-319 195-316 (393)
425 PF09788 Tmemb_55A: Transmembr 30.5 40 0.00087 33.2 2.6 39 2-40 179-217 (256)
426 PF05206 TRM13: Methyltransfer 30.4 88 0.0019 31.0 5.1 34 218-251 20-57 (259)
427 COG1893 ApbA Ketopantoate redu 30.2 3.4E+02 0.0073 27.5 9.4 95 219-321 2-104 (307)
428 PRK08507 prephenate dehydrogen 29.8 2.2E+02 0.0048 27.9 7.9 85 219-315 2-88 (275)
429 cd08289 MDR_yhfp_like Yhfp put 29.4 3.2E+02 0.0068 26.8 9.0 93 218-320 148-245 (326)
430 PRK08306 dipicolinate synthase 29.3 2.1E+02 0.0046 28.7 7.7 88 217-318 152-241 (296)
431 KOG1098 Putative SAM-dependent 29.2 62 0.0013 36.1 3.9 34 218-251 46-79 (780)
432 cd08282 PFDH_like Pseudomonas 28.8 5E+02 0.011 26.4 10.6 98 218-319 178-286 (375)
433 PRK10310 PTS system galactitol 28.6 1.1E+02 0.0023 25.3 4.5 12 223-234 7-18 (94)
434 cd08258 Zn_ADH4 Alcohol dehydr 28.5 5E+02 0.011 25.5 10.3 92 218-320 166-266 (306)
435 PF08139 LPAM_1: Prokaryotic m 28.3 43 0.00094 21.1 1.6 18 24-41 6-23 (25)
436 cd05288 PGDH Prostaglandin deh 27.7 5.2E+02 0.011 25.2 10.3 90 218-319 147-245 (329)
437 TIGR02817 adh_fam_1 zinc-bindi 27.5 5.1E+02 0.011 25.4 10.2 92 218-317 150-246 (336)
438 COG1568 Predicted methyltransf 27.2 5.1E+02 0.011 26.4 9.6 118 218-350 154-283 (354)
439 cd08291 ETR_like_1 2-enoyl thi 27.1 4.1E+02 0.0089 26.2 9.4 82 227-319 156-243 (324)
440 PRK06035 3-hydroxyacyl-CoA deh 26.9 1.3E+02 0.0028 29.8 5.7 91 218-315 4-118 (291)
441 PTZ00354 alcohol dehydrogenase 26.9 6E+02 0.013 24.7 10.8 92 218-319 142-241 (334)
442 cd08235 iditol_2_DH_like L-idi 26.7 4.2E+02 0.0091 26.2 9.4 92 218-319 167-266 (343)
443 PLN02256 arogenate dehydrogena 26.7 2.8E+02 0.0061 28.0 8.1 83 218-313 37-122 (304)
444 PRK06249 2-dehydropantoate 2-r 26.5 3.6E+02 0.0077 27.0 8.9 93 218-319 6-107 (313)
445 PRK07066 3-hydroxybutyryl-CoA 26.1 2E+02 0.0043 29.4 6.9 98 217-319 7-120 (321)
446 cd08297 CAD3 Cinnamyl alcohol 26.1 4.4E+02 0.0096 26.0 9.5 93 218-319 167-266 (341)
447 PF14812 PBP1_TM: Transmembran 26.0 4.9 0.00011 32.7 -3.8 20 15-34 61-80 (81)
448 TIGR00872 gnd_rel 6-phosphoglu 25.9 2.3E+02 0.0049 28.3 7.3 85 220-314 3-89 (298)
449 PRK09548 PTS system ascorbate- 25.6 2.3E+02 0.005 31.6 7.6 56 218-288 507-562 (602)
450 PRK09489 rsmC 16S ribosomal RN 25.5 4.8E+02 0.01 26.8 9.6 95 218-321 21-115 (342)
451 KOG2352 Predicted spermine/spe 25.4 2.6E+02 0.0055 30.4 7.7 104 218-323 297-421 (482)
452 TIGR00027 mthyl_TIGR00027 meth 25.2 6.6E+02 0.014 24.7 10.9 101 217-320 82-199 (260)
453 PF11899 DUF3419: Protein of u 24.8 1.6E+02 0.0034 31.0 6.0 48 199-257 26-73 (380)
454 KOG1269 SAM-dependent methyltr 24.6 1.7E+02 0.0036 30.6 6.1 100 217-321 181-316 (364)
455 cd05289 MDR_like_2 alcohol deh 24.5 6.1E+02 0.013 24.0 11.3 90 218-319 146-239 (309)
456 PRK11064 wecC UDP-N-acetyl-D-m 24.2 2.7E+02 0.006 29.3 7.8 98 218-319 4-120 (415)
457 COG5379 BtaA S-adenosylmethion 24.1 1.8E+02 0.0038 29.8 5.8 38 218-258 65-102 (414)
458 PF02723 NS3_envE: Non-structu 23.9 73 0.0016 26.0 2.6 53 21-74 19-73 (82)
459 PRK09422 ethanol-active dehydr 23.2 3.8E+02 0.0083 26.4 8.4 94 218-319 164-262 (338)
460 PF02177 APP_N: Amyloid A4 N-t 22.9 55 0.0012 27.9 1.7 54 399-455 18-71 (102)
461 TIGR00745 apbA_panE 2-dehydrop 22.7 4.6E+02 0.01 25.4 8.7 84 229-320 5-95 (293)
462 cd05284 arabinose_DH_like D-ar 22.2 2.8E+02 0.0061 27.4 7.1 92 218-319 169-267 (340)
463 PRK12490 6-phosphogluconate de 22.2 2.1E+02 0.0045 28.6 6.1 89 220-317 3-93 (299)
464 COG0569 TrkA K+ transport syst 22.1 2.8E+02 0.006 26.7 6.7 66 219-287 2-73 (225)
465 KOG0821 Predicted ribosomal RN 22.1 1.6E+02 0.0034 28.9 4.9 31 218-248 52-82 (326)
466 KOG2918 Carboxymethyl transfer 22.0 3.5E+02 0.0075 27.8 7.5 40 218-257 89-129 (335)
467 cd08268 MDR2 Medium chain dehy 21.8 7.1E+02 0.015 23.8 10.6 91 218-319 146-244 (328)
468 cd08299 alcohol_DH_class_I_II_ 21.7 6.8E+02 0.015 25.5 10.0 94 218-320 192-294 (373)
469 PF07101 DUF1363: Protein of u 21.6 36 0.00078 28.6 0.4 17 220-236 6-22 (124)
470 PRK07530 3-hydroxybutyryl-CoA 21.2 6.3E+02 0.014 24.8 9.4 88 218-315 5-116 (292)
471 PRK06130 3-hydroxybutyryl-CoA 21.0 4.3E+02 0.0093 26.3 8.2 39 218-259 5-45 (311)
472 PRK09260 3-hydroxybutyryl-CoA 21.0 1.4E+02 0.003 29.6 4.5 92 218-316 2-115 (288)
473 cd08244 MDR_enoyl_red Possible 20.8 7.7E+02 0.017 23.8 10.4 92 218-319 144-242 (324)
474 COG1062 AdhC Zn-dependent alco 20.7 7.7E+02 0.017 25.8 9.7 96 218-321 187-288 (366)
475 PRK07819 3-hydroxybutyryl-CoA 20.7 3.5E+02 0.0076 26.9 7.4 93 218-319 6-122 (286)
476 cd08287 FDH_like_ADH3 formalde 20.6 6.7E+02 0.015 24.8 9.6 93 218-319 170-269 (345)
477 TIGR01692 HIBADH 3-hydroxyisob 20.5 4.8E+02 0.01 25.7 8.4 75 230-316 11-88 (288)
478 PRK09496 trkA potassium transp 20.5 2E+02 0.0044 30.1 5.9 69 217-287 231-304 (453)
479 cd05280 MDR_yhdh_yhfp Yhdh and 20.4 4.9E+02 0.011 25.3 8.4 91 218-319 148-244 (325)
480 cd05279 Zn_ADH1 Liver alcohol 20.2 8.1E+02 0.018 24.7 10.2 91 218-319 185-286 (365)
481 PF14258 DUF4350: Domain of un 20.0 3.5E+02 0.0076 20.4 5.8 20 299-318 51-70 (70)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=9.1e-70 Score=559.38 Aligned_cols=314 Identities=39% Similarity=0.753 Sum_probs=283.0
Q ss_pred CccCCCCchhhhhc--CccccceecCCCCCCCCCCCcccCCCCCCCCCCcCCCCcccccccCcccchhhhccccccchhh
Q 012624 95 NFVPCYNVSANLLA--GFKEGEEFDRHCGMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRL 172 (460)
Q Consensus 95 ~~~pc~d~~~~~~~--~~~~~~~~er~Cp~~~~~~~Cl~~~P~~y~~P~~wP~srd~~W~~Nvp~~~~~~l~~~~~~q~w 172 (460)
|||||+|+++++++ ++++++|||||||+.+++++||||+|++||.|++||+|||++|++||||++ +...+.+|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999998 899999999999999999999999999999999999999999999999999 6678899999
Q ss_pred hhhccccccccccccccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHH
Q 012624 173 MLLEENQIAFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS 252 (460)
Q Consensus 173 ~~~~~~~~~F~~~~~~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~ 252 (460)
+..+++.+.|++|++.+.+++.+|+++|.++++... ....++++||||||+|+|+++|+++++.+++++..|.++.
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 999999999999555445899999999999998721 1236789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhh
Q 012624 253 QVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKN 332 (460)
Q Consensus 253 ~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~ 332 (460)
++++|.+||+++.+..+..++|||++++||+|||+.|+..|.++.+.+|.|++|+|||||+|+++.++.+.+. .++.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~---~~~~ 230 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRT---DEDL 230 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccc---hHHH
Confidence 9999999999999998889999999999999999999999998878899999999999999999999887322 2367
Q ss_pred hHHHHHHHHHHHHhCeEEEeeecceeeeeeccCccccccccc--CCCcccCCCC-CCCceeccceeEccCCCC------C
Q 012624 333 KSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSRKH--GLPLCKEEHD-AVPYYHPLVSCISATNSK------R 403 (460)
Q Consensus 333 ~~~w~~i~~l~~~~~w~~~~~~~~~~iw~k~~~~~C~~~r~~--~~~L~~ag~~-~~awy~pl~~ci~~~~~~------~ 403 (460)
..+|.+|+++++++||++++++++.+||+|+.+++||.+|+. .++||+.+++ +.+||+||++||++.|.. .
T Consensus 231 ~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~ 310 (506)
T PF03141_consen 231 EEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGG 310 (506)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccccccc
Confidence 899999999999999999999999999999999999999986 3999997777 999999999999998854 4
Q ss_pred CCc-ccccc--ccCcccc
Q 012624 404 WIS-IQNRS--SGSQLSS 418 (460)
Q Consensus 404 W~~-~~~~~--~~~~l~~ 418 (460)
|++ -|+|+ .|.+|.+
T Consensus 311 ~~~~WP~RL~~~P~rl~~ 328 (506)
T PF03141_consen 311 WLPKWPERLNAVPPRLSS 328 (506)
T ss_pred CCCCChhhhccCchhhhc
Confidence 443 35555 5555554
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=2.3e-18 Score=167.10 Aligned_cols=103 Identities=26% Similarity=0.293 Sum_probs=80.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----CCCeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||+|||||.++..++++......++++|+|+.|++.|+++ ..++.+..+|++++|+++++||+|+|++++.+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn 128 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN 128 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh
Confidence 7999999999999999998744446899999999999999876 23678889999999999999999999997666
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+ +|..++++|++|+|||||++++.+...
T Consensus 129 ~-~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 129 F-PDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp --SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred h-CCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 6 688889999999999999999998744
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=4.8e-18 Score=164.32 Aligned_cols=103 Identities=26% Similarity=0.244 Sum_probs=92.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCC-----eEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-----AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~-----~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||||||||.++..+++... ..+++++|+|+.|++.|+++-.. +.+..+|+++|||+|++||+|.+++.+.+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 8999999999999999999854 57999999999999999988333 77889999999999999999999997767
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
+ +|.+++|+|++|||||||.+++.+....
T Consensus 132 v-~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 132 V-TDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred C-CCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 6 6889999999999999999999987653
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.71 E-value=1.2e-16 Score=157.49 Aligned_cols=103 Identities=20% Similarity=0.138 Sum_probs=88.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC--------CCeEEEeecccCCCCCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--------LPAMIGNFISRQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg--------l~~~~~~~d~~~Lp~~~~sFDlVvs~~~ 289 (460)
.+|||+|||+|.++..++++......++|+|+|++|++.|+++. .++.+..+|.+++|+++++||+|+++++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~ 154 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYG 154 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecc
Confidence 78999999999999998876322358999999999999997652 2467788888999999999999999987
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
++++ +++..+++|++|+|||||++++.+...
T Consensus 155 l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 155 LRNV-VDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred cccC-CCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 6666 688899999999999999999998864
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.69 E-value=1.5e-16 Score=130.16 Aligned_cols=93 Identities=30% Similarity=0.420 Sum_probs=78.9
Q ss_pred EEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCC--CeEEEeecccCCCCCCCCccEEEEccccccccccHH
Q 012624 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEG 298 (460)
Q Consensus 221 LDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~ 298 (460)
||+|||+|.++..+++++ ..+++++|+++++++.++++.. ...+...+..++|+++++||+|++..+++++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 899999999999999982 2799999999999999988743 3447888899999999999999999876666 7888
Q ss_pred HHHHHHHHhcCCCcEEEE
Q 012624 299 IFLIEADRLLKPGGYFVL 316 (460)
Q Consensus 299 ~~L~ei~RvLkPGG~lvl 316 (460)
.+++|+.|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 6
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.67 E-value=9.7e-17 Score=149.26 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=113.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----CCCeE-EEeecccCCC-CCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAM-IGNFISRQLP-YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----gl~~~-~~~~d~~~Lp-~~~~sFDlVvs~~~l 290 (460)
..|||||||||..-.++-.. ...+|+++|+++.|-++|.++ ...+. +..++.+++| .+++++|+|+++.++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 56899999999988877543 237899999999999877654 44555 7788889998 899999999999999
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeecceeeeeeccCccccc
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYT 370 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~~~~iw~k~~~~~C~~ 370 (460)
+.. +++.+.|+|+.|+|||||.+++.++..... ..|..+- ++...+.|+--.+ +|..
T Consensus 156 CSv-e~~~k~L~e~~rlLRpgG~iifiEHva~~y---------~~~n~i~------------q~v~ep~~~~~~d-GC~l 212 (252)
T KOG4300|consen 156 CSV-EDPVKQLNEVRRLLRPGGRIIFIEHVAGEY---------GFWNRIL------------QQVAEPLWHLESD-GCVL 212 (252)
T ss_pred ecc-CCHHHHHHHHHHhcCCCcEEEEEecccccc---------hHHHHHH------------HHHhchhhheecc-ceEE
Confidence 888 788899999999999999999999987543 3343321 1223345666665 8999
Q ss_pred ccccCCCcccCCCC
Q 012624 371 SRKHGLPLCKEEHD 384 (460)
Q Consensus 371 ~r~~~~~L~~ag~~ 384 (460)
+|+++..|.++.|.
T Consensus 213 trd~~e~Leda~f~ 226 (252)
T KOG4300|consen 213 TRDTGELLEDAEFS 226 (252)
T ss_pred ehhHHHHhhhcccc
Confidence 99999999998887
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=2.8e-15 Score=146.40 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=102.2
Q ss_pred cccccccccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 181 ~F~~~~~~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
.|.. ++..|+..+...+.+++.+..... .....+|||+|||+|.++..+++.+ ..++++|+|+.|++.|+++
T Consensus 12 ~F~~-aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 12 AFGR-AAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHH-HHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhh
Confidence 3665 566666555555555444322111 0123789999999999999998765 5899999999999999887
Q ss_pred CCCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 261 GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 261 gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.....+..+|.+.+|+++++||+|+++. .++|.+++..++.++.|+|||||.++++.+..
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 84 DAADHYLAGDIESLPLATATFDLAWSNL-AVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 6545566778888999999999999987 46677889999999999999999999998764
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.62 E-value=1.2e-15 Score=145.87 Aligned_cols=102 Identities=26% Similarity=0.377 Sum_probs=90.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||||||.|.++..|++.| .+|+|+|.++.+++.|+.+ ++.+.+....++++....++||+|+|..++.|+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 789999999999999999998 6899999999999988754 666667777777777666899999999999999
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
++++.+++.+.+++||||.+++++.+.+.
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 78889999999999999999999997543
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=2.3e-14 Score=146.66 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=88.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEcccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l 290 (460)
..+|||||||+|.++..+++.. ..+++|+|+|+.|++.|+++ ++ ++.+..+|...+|+++++||+|++..++
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 3789999999999999999873 26899999999999988764 33 4678888888999999999999999887
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+|+ ++...++++++|+|||||++++.++..
T Consensus 197 ~h~-~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHM-PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hcc-CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 787 577889999999999999999988654
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.60 E-value=1.7e-14 Score=142.50 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred HHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeeccc
Q 012624 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISR 272 (460)
Q Consensus 196 ~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d~~ 272 (460)
..+.+.+.+...++ .+|||||||+|..+..+++.. ..+++++|+|+.|++.|+++. ..+.+...|..
T Consensus 40 ~~~~~l~~l~l~~~--------~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~ 109 (263)
T PTZ00098 40 ATTKILSDIELNEN--------SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL 109 (263)
T ss_pred HHHHHHHhCCCCCC--------CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc
Confidence 45556666665554 799999999999999988752 268999999999999998763 24667777778
Q ss_pred CCCCCCCCccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchh---------hhHHHHHHHHH
Q 012624 273 QLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRK---------NKSLLKVMEEF 342 (460)
Q Consensus 273 ~Lp~~~~sFDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e---------~~~~w~~i~~l 342 (460)
..++++++||+|++..+++|+. .+...++++++++|||||+++++++............ ....-..+..+
T Consensus 110 ~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (263)
T PTZ00098 110 KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDL 189 (263)
T ss_pred cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 8889999999999988778875 3777899999999999999999987543211110000 00112455666
Q ss_pred HHHhCeEEEeeecceeeeeec
Q 012624 343 TEKICWSLIAQQDETFIWQKT 363 (460)
Q Consensus 343 ~~~~~w~~~~~~~~~~iw~k~ 363 (460)
.++.+|+.+...+.+..|...
T Consensus 190 l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 190 IKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred HHHCCCCeeeEEeCcHHHHHH
Confidence 677777776665555444443
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.58 E-value=1.2e-14 Score=130.80 Aligned_cols=96 Identities=33% Similarity=0.575 Sum_probs=79.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
.+|||||||+|.++..+++.+ .+++|+|+++.+++. ........+....+.++++||+|+|+.+++|+ +++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~-~d~ 94 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL-PDP 94 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS-SHH
T ss_pred CEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhc-ccH
Confidence 799999999999999998886 489999999999988 22333333334555678999999999977777 578
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
..+|+++.++|||||+++++++...
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 8999999999999999999999753
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.56 E-value=3.4e-14 Score=143.99 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=87.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC------CCeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg------l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||||||+|.++..|++.+ .+++|+|++++|++.|+++. ..+.+...+.+++++++++||+|+|..+++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 689999999999999998865 58999999999999998651 246677777888888888999999999888
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
|+ .++..+++++.++|||||.+++++.+.
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 87 578889999999999999999998754
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.56 E-value=3.5e-14 Score=136.24 Aligned_cols=133 Identities=23% Similarity=0.211 Sum_probs=104.2
Q ss_pred ccccchhHHHHHHHHHHccCCCchhh--------ccCCCeEEEeCCCCchHHHHHHhccCc-----eeEEEEeeCCHHHH
Q 012624 188 LVFDGVKDYSRQIAEMIGLGTDSEFL--------QAGVQSVLDVGCGFGSFGAHLVSLKLM-----AVCVAVYEATGSQV 254 (460)
Q Consensus 188 ~~fd~~~~~~~~i~~~l~~~~~~~~~--------~~~~~~VLDIGCGtG~~a~~La~~~~~-----~~~v~giD~s~~~l 254 (460)
..|+..+.+++.+.+.+..+....|. .....++||++||||..+..+.+.-.. ..+|+..|+++.|+
T Consensus 64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 34445556666666666554332221 223479999999999999999886322 26899999999999
Q ss_pred HHHHHcC----C----CeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 255 QLALERG----L----PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 255 ~~A~~rg----l----~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
..+++|. + .+.+..+|+++|||++++||+.++++.+-++ .+++++|+|++|||||||+|.+.+...
T Consensus 144 ~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 144 AVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9887762 2 3678888999999999999999999988888 688899999999999999999988754
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=2.5e-14 Score=140.36 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=82.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
.+|||||||+|.++..++++. ...+++|+|+|+.|++.|+++++.+. .+|.+.++ ++++||+|+++.++++ .+++
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~~~~--~~d~~~~~-~~~~fD~v~~~~~l~~-~~d~ 105 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGVDAR--TGDVRDWK-PKPDTDVVVSNAALQW-VPEH 105 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCCcEE--EcChhhCC-CCCCceEEEEehhhhh-CCCH
Confidence 799999999999999999874 23689999999999999988775544 45556664 5689999999986555 4788
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCC
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
..++++++++|||||++++..+.
T Consensus 106 ~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 106 ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCC
Confidence 88999999999999999998654
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.55 E-value=4.1e-14 Score=136.75 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=76.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
.+|||||||||.++..+++.. ..+++|+|+|++|++.|+++. ....++.+.+|+++++||+|+++++++++ +++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~-~d~ 126 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS-DNI 126 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc-CCH
Confidence 689999999999999998874 258999999999999998763 23456788999999999999999976655 788
Q ss_pred HHHHHHHHHhcCCCc
Q 012624 298 GIFLIEADRLLKPGG 312 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG 312 (460)
+.+++|++|+|||++
T Consensus 127 ~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 127 EKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHhcCce
Confidence 899999999999953
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.54 E-value=1.3e-13 Score=132.77 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=92.0
Q ss_pred HHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeec
Q 012624 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFI 270 (460)
Q Consensus 196 ~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d 270 (460)
+.+.+.+.+....+ .+|||+|||+|.++..+++.......++|+|+++.+++.|+++ +. .+.+...|
T Consensus 33 ~~~~~l~~l~~~~~--------~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d 104 (231)
T TIGR02752 33 WRKDTMKRMNVQAG--------TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN 104 (231)
T ss_pred HHHHHHHhcCCCCC--------CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec
Confidence 33445555544433 7999999999999999988633346899999999999988765 22 45667777
Q ss_pred ccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 271 ~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
...+++++++||+|++..++.+. ++...+++++.++|||||++++.+...
T Consensus 105 ~~~~~~~~~~fD~V~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 105 AMELPFDDNSFDYVTIGFGLRNV-PDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred hhcCCCCCCCccEEEEecccccC-CCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 88888888999999998765444 678889999999999999999987643
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=1.9e-13 Score=129.15 Aligned_cols=140 Identities=14% Similarity=0.208 Sum_probs=94.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++++ ..|+++|+|+.|++.++++ ++++.....|....+++ ++||+|+++.+++++
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 689999999999999999886 5899999999999977544 56655555565555553 679999999866665
Q ss_pred c-ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCC-CCchhhhHHHHHHHHHHHHhCeEEEeeecceeeeeec
Q 012624 294 D-KKEGIFLIEADRLLKPGGYFVLTSPESKPRGS-SSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKT 363 (460)
Q Consensus 294 ~-~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~-~~~~e~~~~w~~i~~l~~~~~w~~~~~~~~~~iw~k~ 363 (460)
. ++...++++++|+|||||++++.+........ .++....-..+++..+.+ .|+.+.-......|.+.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 4 34567999999999999997665432211111 011122233344444443 47776655444444443
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.53 E-value=2.2e-13 Score=132.23 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=83.2
Q ss_pred CeEEEeCCCCchHHHHHHhcc-CceeEEEEeeCCHHHHHHHHHc------CCCeEEEeecccCCCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALER------GLPAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~-~~~~~v~giD~s~~~l~~A~~r------gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l 290 (460)
.+|||||||+|.++..++++. ....+++|+|+|+.|++.|+++ ..++.+...|...++++ .+|+|++++++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecch
Confidence 689999999999999998762 2347899999999999999775 23467777788887764 48999999876
Q ss_pred cccc-ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 291 IIWD-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 291 ~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+++. ++...++++++|+|||||.++++++..
T Consensus 133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 6664 245679999999999999999998754
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=2.3e-13 Score=128.66 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=77.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||+|||+|.++..|++++ .+|+++|+|+.|++.++++ ++. +.+...|...+++ +++||+|+++.++++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchhh
Confidence 689999999999999999986 5899999999999988654 332 4555566666666 467999999986655
Q ss_pred cc-ccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 293 WD-KKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 293 ~~-~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
+. ++...+++++.++|||||++++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 345679999999999999966543
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=3e-13 Score=132.52 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=83.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
.+|||||||+|.++..+++.. ...+++|+|+|+.|++.|+++...+.+...|...+. ++++||+|+++.++ ||.++.
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~d~ 109 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL-QWLPDH 109 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh-hhCCCH
Confidence 799999999999999999874 336899999999999999887555667666766664 45699999999854 555788
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCC
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
..++++++++|||||.+++..+.
T Consensus 110 ~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 110 LELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEECCC
Confidence 88999999999999999998653
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.50 E-value=1.8e-13 Score=116.34 Aligned_cols=100 Identities=26% Similarity=0.320 Sum_probs=78.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------CCCeEEEeecc-cCCCCCCCCccEEEEcc-c
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GLPAMIGNFIS-RQLPYPSLSFDMVHCAQ-C 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------gl~~~~~~~d~-~~Lp~~~~sFDlVvs~~-~ 289 (460)
.+|||||||+|.++..++++. ...+++++|+|+.+++.|+++ ..++.+...|. ..... .+.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 689999999999999999942 126899999999999999876 24677777776 33333 45699999987 4
Q ss_pred ccccc--ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWD--KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.++. ++...+++++.+.|+|||++++.++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 33333 4556799999999999999999864
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=4.8e-13 Score=142.58 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=87.9
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
..+|||||||+|..+..+++.. ..+++|+|+|+.+++.|+++ +..+.+...|...+++++++||+|+|..+++|
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 3689999999999999998763 35899999999999999765 23466777788888888899999999987777
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
+ .++..++++++|+|||||.+++.++...
T Consensus 345 ~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 345 I-QDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred c-CCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 7 6788899999999999999999987543
No 23
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.49 E-value=2.3e-13 Score=130.37 Aligned_cols=102 Identities=24% Similarity=0.301 Sum_probs=86.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCC-CeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl-~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+|||+|||+|.++..+++.+. ...++++|+++.+++.++++.. ++.+...|...+++++++||+|++..++ |+..+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~~~~ 113 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QWCDD 113 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hhccC
Confidence 6899999999999999998864 3578999999999998887632 4556667778888888999999999865 44478
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+..++.++.++|||||.+++.++..
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 8889999999999999999998754
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.49 E-value=6.3e-13 Score=135.44 Aligned_cols=143 Identities=21% Similarity=0.147 Sum_probs=105.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC--CCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg--l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+|||||||+|.++..+++.. ...+++++|.|++|++.|+++. ..+.+...|.+++++++++||+|+++.+++++ +
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~-~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW-P 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-C
Confidence 689999999999999888763 2258999999999999998762 24556677888889989999999999876666 6
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCCCC--CCCCCch--hhhHHHHHHHHHHHHhCeEEEeeecceeeeee
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSPESKP--RGSSSSR--KNKSLLKVMEEFTEKICWSLIAQQDETFIWQK 362 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~~~~~--~~~~~~~--e~~~~w~~i~~l~~~~~w~~~~~~~~~~iw~k 362 (460)
+...++++++|+|||||.+++.++.... ....... .....-+++.++.++.+|+.+........|.+
T Consensus 193 d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~ 263 (340)
T PLN02490 193 DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYR 263 (340)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcc
Confidence 7778999999999999999987653211 0000000 00112356677888899998776655555544
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.49 E-value=4.3e-13 Score=128.26 Aligned_cols=117 Identities=27% Similarity=0.351 Sum_probs=95.5
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeec
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFI 270 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d 270 (460)
.+.+.+.+.+....+ .+|||+|||+|.++..+++......+++++|+++.+++.++++ +..+.+...|
T Consensus 6 ~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d 77 (241)
T PRK08317 6 RYRARTFELLAVQPG--------DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD 77 (241)
T ss_pred HHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc
Confidence 345556666665544 7999999999999999988742346899999999999999876 3346677777
Q ss_pred ccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 271 ~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
...+++++++||+|++..++.++ .++..+++++.++|||||++++.++.
T Consensus 78 ~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 78 ADGLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cccCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 77888888999999999876666 67888999999999999999999864
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=5.1e-13 Score=135.71 Aligned_cols=99 Identities=23% Similarity=0.195 Sum_probs=82.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH--c----CCCeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--R----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~--r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
++|||||||+|.++..++..+. ..|+|+|+|+.|+..++. + ..++.+..++.+.+|+ +++||+|+|..+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 7999999999999999999864 369999999998864322 2 2356777778888888 78999999998777
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
|. .++..++++++++|||||.+++.+..
T Consensus 201 H~-~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 201 HR-RSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred cc-CCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 76 68888999999999999999998653
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.48 E-value=2.7e-13 Score=122.50 Aligned_cols=102 Identities=24% Similarity=0.339 Sum_probs=84.7
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCC--CCCCCccEEEEccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP--YPSLSFDMVHCAQC 289 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp--~~~~sFDlVvs~~~ 289 (460)
..+|||+|||+|.++..++++......++|+|+|++|++.|+++ +. .+.+...|..+++ ++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 37899999999999999995422346899999999999999874 44 4788888888877 65 89999999976
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+++. .+...+++++.++|++||.+++.+..
T Consensus 83 l~~~-~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHF-PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGT-SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhc-cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5444 67788999999999999999999985
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=3.9e-13 Score=131.90 Aligned_cols=100 Identities=19% Similarity=0.187 Sum_probs=83.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCC-CCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP-YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp-~~~~sFDlVvs~~~l 290 (460)
.+|||+|||+|.++..+++.+ .+++++|+|+.|++.|+++ ++ .+.+...+..+++ +.+++||+|++..++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 699999999999999999986 5899999999999998775 32 3556666666663 567899999999866
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+++ +++..++.++.++|||||++++...+.
T Consensus 123 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 123 EWV-ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred Hhh-CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 555 678889999999999999999887653
No 29
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=4.7e-13 Score=132.66 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=80.9
Q ss_pred CeEEEeCCCCchHHHHHHhccCc--eeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLM--AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~--~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+|||+|||+|.++..+++.... ...++|+|+|+.|++.|+++...+.+..+|..++|+++++||+|++.+. +
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-----~ 161 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-----P 161 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----C
Confidence 68999999999999999876321 2478999999999999988866777778888899999999999998752 1
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
..++|++|+|||||++++..+..
T Consensus 162 ---~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 162 ---CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCHHHHHhhccCCCEEEEEeCCC
Confidence 24689999999999999998765
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=9.3e-13 Score=128.81 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=81.8
Q ss_pred CeEEEeCCCCchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l 290 (460)
.+|||||||+|..+..+++. .....+++++|+|+.|++.|+++ +. ++.+...+...++++ .+|+|+++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 68999999999999888773 12347899999999999999876 22 466777777777764 49999999876
Q ss_pred ccccc-cHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 291 IIWDK-KEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 291 ~~~~~-d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+++.+ +...++++++++|||||.|++++...
T Consensus 136 ~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 66642 33579999999999999999998654
No 31
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1.7e-12 Score=129.82 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=79.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++ ++.+.+...|....++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 589999999999999999886 5899999999999887654 6666666666655554 6789999999876665
Q ss_pred c-ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 294 D-KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ~-~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ++...+++++.++|+|||++++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4 3456799999999999999777544
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=1.6e-13 Score=115.36 Aligned_cols=93 Identities=28% Similarity=0.399 Sum_probs=74.5
Q ss_pred EEEeCCCCchHHHHHHhcc--CceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccc-ccc
Q 012624 220 VLDVGCGFGSFGAHLVSLK--LMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQC-GII 292 (460)
Q Consensus 220 VLDIGCGtG~~a~~La~~~--~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~-l~~ 292 (460)
|||+|||+|..+..+.+.. .....++++|+|++|++.++++ +.++.+...|..++++.+++||+|+++.. +.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999874 1226899999999999999877 47888999999999988899999999655 555
Q ss_pred cc-ccHHHHHHHHHHhcCCCc
Q 012624 293 WD-KKEGIFLIEADRLLKPGG 312 (460)
Q Consensus 293 ~~-~d~~~~L~ei~RvLkPGG 312 (460)
+. ++...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 53 344679999999999998
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.43 E-value=2.1e-12 Score=127.74 Aligned_cols=103 Identities=22% Similarity=0.126 Sum_probs=84.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||||||+|..+..+++......+++++|+++.|++.|+++ +. .+.+...+.+.+++++++||+|+++.++ +
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~-~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI-N 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc-c
Confidence 7999999999998877766522335799999999999999875 32 4566667788889888999999998654 4
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+.++...++++++|+|||||++++++...
T Consensus 158 ~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 158 LSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 44677789999999999999999988654
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.42 E-value=1.3e-12 Score=132.02 Aligned_cols=99 Identities=20% Similarity=0.135 Sum_probs=80.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH--c----CCCeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--R----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~--r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
++|||||||+|.++..++..+. ..++|+|+|+.|+..+.. + ...+.+..++.++++.. ++||+|+|+.+++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhh
Confidence 7999999999999999988864 478999999999865422 1 23455666677778754 5899999999888
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
|+ .++..+|++++|+|||||.|++.+..
T Consensus 200 H~-~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 200 HR-KSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred cc-CCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 87 68888999999999999999998654
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.42 E-value=1e-12 Score=130.49 Aligned_cols=157 Identities=24% Similarity=0.264 Sum_probs=101.8
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEe
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGN 268 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~ 268 (460)
..++.+.+.+..+++ .+|||||||.|.++.+++++. .++|+|+.+|++|.+.++++ |+ .+.+..
T Consensus 49 ~k~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~ 118 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRL 118 (273)
T ss_dssp HHHHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred HHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 445555666666665 899999999999999999983 26899999999999998765 54 355666
Q ss_pred ecccCCCCCCCCccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCCCCCC-----C--C-------CCchhhh
Q 012624 269 FISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKPR-----G--S-------SSSRKNK 333 (460)
Q Consensus 269 ~d~~~Lp~~~~sFDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~-----~--~-------~~~~e~~ 333 (460)
.|..+++. +||.|++..++.|+. .+...+++++.++|||||.+++........ . . +.+....
T Consensus 119 ~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~l 195 (273)
T PF02353_consen 119 QDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYL 195 (273)
T ss_dssp S-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS--
T ss_pred eeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCC
Confidence 66666543 899999999888985 466789999999999999999876543221 0 0 1122223
Q ss_pred HHHHHHHHHHHHhCeEEEeeecceeeeeecc
Q 012624 334 SLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (460)
Q Consensus 334 ~~w~~i~~l~~~~~w~~~~~~~~~~iw~k~~ 364 (460)
.....+....++.+|++....+...-|.++.
T Consensus 196 ps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl 226 (273)
T PF02353_consen 196 PSLSEILRAAEDAGLEVEDVENLGRHYARTL 226 (273)
T ss_dssp -BHHHHHHHHHHTT-EEEEEEE-HHHHHHHH
T ss_pred CCHHHHHHHHhcCCEEEEEEEEcCcCHHHHH
Confidence 3345556666778888877666555555544
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.41 E-value=2.8e-12 Score=122.83 Aligned_cols=133 Identities=23% Similarity=0.234 Sum_probs=95.1
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
+|||||||+|.++..+++... ..+++|+|+|+++++.++++ ++ .+.+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 699999999999999988742 36899999999999988775 23 345666666555654 58999999987777
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCC---chhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSS---SRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~---~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
+ .+...++++++++|||||++++.++......... ..........+..+.++.+|+++...
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 6 6778899999999999999999987532211100 00011122344556677888876543
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=9.4e-14 Score=116.09 Aligned_cols=92 Identities=28% Similarity=0.272 Sum_probs=59.0
Q ss_pred EEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----CCCeEEEeecccCCC--CCCCCccEEEEccccccc
Q 012624 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAMIGNFISRQLP--YPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 221 LDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----gl~~~~~~~d~~~Lp--~~~~sFDlVvs~~~l~~~ 293 (460)
||||||+|.++..++++. ...+++++|+|+.|++.|+++ .........+..+.. ...++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999884 458999999999999776655 222333333333322 123599999999977777
Q ss_pred cccHHHHHHHHHHhcCCCcEE
Q 012624 294 DKKEGIFLIEADRLLKPGGYF 314 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~l 314 (460)
++...+++.++++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 88889999999999999986
No 38
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=121.97 Aligned_cols=123 Identities=18% Similarity=0.246 Sum_probs=102.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
++|.|+|||+|..+..|+++.+ ...++|+|.|++|++.|+++..+..+..+|...+. ++..+|+++++- .++|.+|.
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWlpdH 108 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWLPDH 108 (257)
T ss_pred ceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhcccc
Confidence 8999999999999999999853 47899999999999999999999999888888875 578899999995 78898888
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEe
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~ 352 (460)
..+|..+...|.|||.+.+.-|..-. ......|.+.+++.-|....
T Consensus 109 ~~ll~rL~~~L~Pgg~LAVQmPdN~d---------epsH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 109 PELLPRLVSQLAPGGVLAVQMPDNLD---------EPSHRLMRETADEAPFAQEL 154 (257)
T ss_pred HHHHHHHHHhhCCCceEEEECCCccC---------chhHHHHHHHHhcCchhhhh
Confidence 88999999999999999999885422 23344556666655555433
No 39
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=5.7e-12 Score=124.49 Aligned_cols=118 Identities=24% Similarity=0.274 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC--eEE
Q 012624 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMI 266 (460)
Q Consensus 193 ~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~--~~~ 266 (460)
.....+.+.+.+.++++ .+|||||||.|.++.+++++. ..+|+|+++|++|.+.++++ |+. +++
T Consensus 57 Q~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v 126 (283)
T COG2230 57 QRAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEV 126 (283)
T ss_pred HHHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEE
Confidence 34567778888888887 999999999999999999984 36899999999999988775 555 334
Q ss_pred EeecccCCCCCCCCccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 267 GNFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 267 ~~~d~~~Lp~~~~sFDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
.-. +.+...+.||-|+|...+.|+. .+.+.+++.++++|+|||.+++.+.....
T Consensus 127 ~l~---d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 127 RLQ---DYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred Eec---cccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 333 3333345599999999888885 45678999999999999999998765544
No 40
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.38 E-value=6.6e-13 Score=128.19 Aligned_cols=99 Identities=28% Similarity=0.312 Sum_probs=81.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC-------C----CeEEEeecccCCCCCCCCccEEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-------L----PAMIGNFISRQLPYPSLSFDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg-------l----~~~~~~~d~~~Lp~~~~sFDlVvs 286 (460)
++|||+|||+|.++..|++.| .+|+|+|.++.|++.|++.. . ...+.+.+.+.+ .+.||+|+|
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 679999999999999999998 68999999999999998761 1 122333333333 345999999
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
+.+++|+ .|++.++..+.+.|||||.+++++.+...
T Consensus 165 sevleHV-~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 165 SEVLEHV-KDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred HHHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9998888 78999999999999999999999986543
No 41
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.37 E-value=3e-12 Score=126.61 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=80.7
Q ss_pred CCeEEEeCCCCch----HHHHHHhccC----ceeEEEEeeCCHHHHHHHHHcC---------------------------
Q 012624 217 VQSVLDVGCGFGS----FGAHLVSLKL----MAVCVAVYEATGSQVQLALERG--------------------------- 261 (460)
Q Consensus 217 ~~~VLDIGCGtG~----~a~~La~~~~----~~~~v~giD~s~~~l~~A~~rg--------------------------- 261 (460)
..+|+|+|||+|. ++..+++... ...+++|+|+|+.|++.|++.-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3689999999995 5666665432 2468999999999999997631
Q ss_pred -----CCeEEEeecccCCCCCCCCccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 262 -----LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 262 -----l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
..+.+...|....++++++||+|+|.++++++. ++...++++++++|+|||++++...
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 134566677777777788999999998888875 2345799999999999999998654
No 42
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.37 E-value=5.6e-12 Score=130.96 Aligned_cols=114 Identities=29% Similarity=0.343 Sum_probs=88.5
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc--CCCeEEEeeccc
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGNFISR 272 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r--gl~~~~~~~d~~ 272 (460)
..++.+.+.+...++ .+|||||||+|.++..+++.. ..+|+|+|+|++|++.|+++ ++.+.+...|..
T Consensus 154 ~k~~~l~~~l~l~~g--------~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~ 223 (383)
T PRK11705 154 AKLDLICRKLQLKPG--------MRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR 223 (383)
T ss_pred HHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchh
Confidence 445566666665554 799999999999999998763 25899999999999999876 344555555554
Q ss_pred CCCCCCCCccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 273 QLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 273 ~Lp~~~~sFDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.+ +++||.|++..++.|.. .+...+++++.++|||||++++.+...
T Consensus 224 ~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 224 DL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 44 47899999988777763 345679999999999999999987643
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.36 E-value=2.2e-11 Score=114.45 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=91.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||||||+|..+..++... ...+++++|+++.|++.|+++ ++ .+.+...+...++. +++||+|++..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 789999999999999988753 236899999999999988764 44 36677777777776 77999999874
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
+ .+...++++++++|||||++++..... .-..+.++++..+|.+..+
T Consensus 121 ~-~~~~~~l~~~~~~LkpGG~lv~~~~~~-------------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 V-ASLSDLVELCLPLLKPGGRFLALKGRD-------------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred c-cCHHHHHHHHHHhcCCCeEEEEEeCCC-------------hHHHHHHHHHhcCceEeee
Confidence 1 456679999999999999999997532 1234677788889887554
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.36 E-value=7.4e-12 Score=119.24 Aligned_cols=100 Identities=19% Similarity=0.045 Sum_probs=81.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc-c
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK-K 296 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~-d 296 (460)
.+|||||||+|.++..|++.. ...+++|+|+|+.|++.|+++...+.+..++... |+++++||+|++..+++|+.+ +
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~ 122 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDN 122 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHH
Confidence 689999999999999998762 2268999999999999998864445566666666 888999999999998888853 3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
...++++++|++ ++++++.+...
T Consensus 123 ~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 123 LPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHhhc--CcEEEEEEeeC
Confidence 567999999998 57888887643
No 45
>PRK06922 hypothetical protein; Provisional
Probab=99.35 E-value=3.4e-12 Score=138.06 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=84.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCC--CCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLP--YPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp--~~~~sFDlVvs~~~l~ 291 (460)
.+|||||||+|.++..+++.. ....++|+|+|+.|++.|+++ +.++.+..+|..+++ +++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 799999999999999888764 347999999999999998765 345566667777777 7889999999987666
Q ss_pred ccc------------ccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWD------------KKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~------------~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
++. .+...++++++|+|||||.+++.+..
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 542 24567999999999999999999864
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.35 E-value=4.7e-11 Score=114.61 Aligned_cols=103 Identities=25% Similarity=0.230 Sum_probs=85.9
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC------CCeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg------l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.++..+++.+....+++++|+++.+++.++++. ..+.+...|...+++++++||+|+++.+++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 68999999999999999887643468999999999999987762 245666677777777778999999988665
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
++ .+...+++++.++|+|||.+++.+...
T Consensus 133 ~~-~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 133 NV-PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cC-CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 55 678889999999999999999987644
No 47
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.33 E-value=1.7e-11 Score=114.36 Aligned_cols=99 Identities=27% Similarity=0.315 Sum_probs=84.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
.+|||+|||.|.+..+|.+.. .++..|+|++++.+..+.++|+++...+++..--.|++++||.|+++.++.+. .++
T Consensus 15 srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~-~~P 91 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV-RRP 91 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH-hHH
Confidence 789999999999999998852 36789999999999999999999998888653224999999999999987777 678
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
+.+|+|+.|+ |...+++-|+..
T Consensus 92 ~~vL~EmlRV---gr~~IVsFPNFg 113 (193)
T PF07021_consen 92 DEVLEEMLRV---GRRAIVSFPNFG 113 (193)
T ss_pred HHHHHHHHHh---cCeEEEEecChH
Confidence 8899999776 668888888764
No 48
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.32 E-value=2.5e-11 Score=115.22 Aligned_cols=102 Identities=27% Similarity=0.270 Sum_probs=85.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeecccCCCCCCCCccEEEEcccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~ 294 (460)
.+|||+|||+|.++..+++......+++++|+++.+++.++++. ..+.+...|..++++++++||+|++...+++.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~- 119 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV- 119 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc-
Confidence 79999999999999999988643358999999999999987763 24566667777788878899999998865555
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 295 KKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 295 ~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.+...+++++.++|+|||++++.+..
T Consensus 120 ~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 120 TDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 67888999999999999999998764
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.30 E-value=2.7e-11 Score=113.92 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=77.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHH----HHcCCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A----~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.++||+|||.|..+.+|+++| ..|+++|.|+..++.+ .+.++++.....|.....++ +.||+|+++.++.+.
T Consensus 32 g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 799999999999999999998 6899999999887644 45588888888887777764 689999998666666
Q ss_pred c-ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 294 D-KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ~-~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. +....+++.+...++|||++++...
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 4 3345789999999999999998654
No 50
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.28 E-value=8.6e-11 Score=112.69 Aligned_cols=99 Identities=20% Similarity=0.010 Sum_probs=78.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH-cCC----------------CeEEEeecccCCCCC-CC
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGL----------------PAMIGNFISRQLPYP-SL 279 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~-rgl----------------~~~~~~~d~~~Lp~~-~~ 279 (460)
.+|||+|||.|..+..|+++| .+|+|+|+|+.+++.+.+ .++ .+.+..+|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 699999999999999999997 689999999999998533 332 355566676666532 35
Q ss_pred CccEEEEccccccccccH-HHHHHHHHHhcCCCcEEEEEeC
Q 012624 280 SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 280 sFDlVvs~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.||.|+-..+++|+.++. ..+++.+.++|||||++++...
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 799999887778886443 5689999999999998666644
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.28 E-value=1.3e-10 Score=107.99 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=87.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++.+. +++++|+++.+++.++++ +..+.+...|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6899999999999999998863 799999999999988765 455666666654433 4589999998654444
Q ss_pred ccc--------------------HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 294 DKK--------------------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 294 ~~d--------------------~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
.++ ...+++++.++|||||.+++..+.... -..+..+.++.+|+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~------------~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG------------EPDTFDKLDERGFRYEIV 163 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC------------hHHHHHHHHhCCCeEEEE
Confidence 211 245799999999999999998864321 123445556677776554
Q ss_pred e
Q 012624 354 Q 354 (460)
Q Consensus 354 ~ 354 (460)
.
T Consensus 164 ~ 164 (179)
T TIGR00537 164 A 164 (179)
T ss_pred E
Confidence 3
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=7.3e-11 Score=113.03 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEE
Q 012624 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMI 266 (460)
Q Consensus 193 ~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~ 266 (460)
.....+.+.+.+.... ....+|||+|||+|.++..+++.+ ..++|+|+|++|++.|+++ +. .+.+
T Consensus 38 ~~~~~~~~~~~l~~~~------~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~ 108 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDP------LKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEF 108 (219)
T ss_pred HHHHHHHHHHHHhcCC------CCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence 3445555666665201 123799999999999999999875 5899999999999999876 22 4566
Q ss_pred EeecccCCCCCCCCccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEE
Q 012624 267 GNFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 267 ~~~d~~~Lp~~~~sFDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~ 317 (460)
...|...++ ++||+|++..+++|+. ++...+++++.+++++|+++.+.
T Consensus 109 ~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 109 EVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 666666654 7899999998777774 34567899999999987766654
No 53
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.28 E-value=5.2e-11 Score=112.30 Aligned_cols=134 Identities=22% Similarity=0.270 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCC--eEEEeecc
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP--AMIGNFIS 271 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~--~~~~~~d~ 271 (460)
....+...+.+.+..+ ...-|||||||+|..+..|.+.| ...+|+|+|+.|++.|.++.+. ....++.
T Consensus 34 ~em~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG- 103 (270)
T KOG1541|consen 34 AEMAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMG- 103 (270)
T ss_pred HHHHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecC-
Confidence 3444555566655442 34789999999999999998887 5789999999999999987544 5566664
Q ss_pred cCCCCCCCCccEEEEcccccccc-------ccH----HHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHH
Q 012624 272 RQLPYPSLSFDMVHCAQCGIIWD-------KKE----GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVME 340 (460)
Q Consensus 272 ~~Lp~~~~sFDlVvs~~~l~~~~-------~d~----~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~ 340 (460)
+.+||..++||.|++.. .++|. .++ ..++..++.+|++|+..++.--+. ...+.+.+.
T Consensus 104 ~GlpfrpGtFDg~ISIS-AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe----------n~~q~d~i~ 172 (270)
T KOG1541|consen 104 EGLPFRPGTFDGVISIS-AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE----------NEAQIDMIM 172 (270)
T ss_pred CCCCCCCCccceEEEee-eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc----------chHHHHHHH
Confidence 88999999999999985 45662 122 246888999999999999987643 233444445
Q ss_pred HHHHHhCe
Q 012624 341 EFTEKICW 348 (460)
Q Consensus 341 ~l~~~~~w 348 (460)
.-+...+|
T Consensus 173 ~~a~~aGF 180 (270)
T KOG1541|consen 173 QQAMKAGF 180 (270)
T ss_pred HHHHhhcc
Confidence 55555554
No 54
>PRK06202 hypothetical protein; Provisional
Probab=99.27 E-value=6.4e-11 Score=114.51 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=77.1
Q ss_pred CCeEEEeCCCCchHHHHHHhc---cCceeEEEEeeCCHHHHHHHHHcC--CCeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~---~~~~~~v~giD~s~~~l~~A~~rg--l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
..+|||||||+|.++..|++. .....+++|+|+|+.|++.|+++. ..+.+...+...++.++++||+|+++.+++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 378999999999998888753 112358999999999999998762 223444445566667788999999999877
Q ss_pred ccccc-HHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKK-EGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d-~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
|+.++ ...++++++|+++ |.+++.+..
T Consensus 141 h~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 141 HLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred cCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 77432 3469999999998 666666654
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.26 E-value=4.8e-11 Score=111.65 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=75.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeecccCCCCCCCCccEEEEcccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~ 294 (460)
+++||+|||.|.++..|+.+. ..++++|+|+..++.|++|- ..+.+..++..+. .++++||+||++.+++.+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 789999999999999999985 58999999999999999882 3466777766443 5789999999999777774
Q ss_pred c--cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 295 K--KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 295 ~--d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+ +...++..+.+.|+|||.+++...
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3 455789999999999999999876
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=3e-11 Score=128.77 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=82.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeeccc--CCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISR--QLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d~~--~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||||||+|.++..|++.+ ..++|+|+++.|++.+++.. ..+.+...|.. .+++++++||+|++..+++|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 689999999999999999874 47899999999999876542 23455555553 56788899999999987777
Q ss_pred cccc-HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 293 WDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 293 ~~~d-~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+.++ ...++++++|+|||||++++.+...
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 7533 4679999999999999999988654
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=5.5e-11 Score=112.96 Aligned_cols=101 Identities=25% Similarity=0.254 Sum_probs=79.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecc-cCCC--CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFIS-RQLP--YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~-~~Lp--~~~~sFDlVvs~~~ 289 (460)
.+|||||||+|.++..+++.. ...+++++|+|+.+++.|+++ +. ++.+...|. +.++ +++++||+|++.+.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 789999999999999998864 236899999999999988764 32 466777776 6666 77889999998753
Q ss_pred cccccc--------cHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 290 GIIWDK--------KEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 290 l~~~~~--------d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.+|.. ....++++++++|||||.+++....
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 33321 1356899999999999999998763
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.25 E-value=1.3e-10 Score=99.96 Aligned_cols=96 Identities=24% Similarity=0.203 Sum_probs=73.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccC-CCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ-LPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~-Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.++..++++... .+++++|+++.+++.++++ +. ++.+...+... ++...++||.|++....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~- 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG- 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc-
Confidence 68999999999999999987433 6899999999999988654 22 34555454433 33334689999987532
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
.....+++++++.|||||++++..
T Consensus 99 ---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 ---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 233479999999999999999875
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=2.4e-10 Score=106.83 Aligned_cols=95 Identities=25% Similarity=0.330 Sum_probs=74.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||+|||+|.++..++..+. ..+++++|.++.|++.+++. ++ ++.+...|.++++ .+++||+|++.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence 7899999999999999886643 36799999999998877543 44 3667777777764 367999999864 2
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.+...+++.++++|||||.+++...
T Consensus 119 --~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 --ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred --hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2445688899999999999998753
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.22 E-value=1.4e-10 Score=114.97 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=99.1
Q ss_pred HHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHH---HHHc-CC--CeEEEeecc
Q 012624 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL---ALER-GL--PAMIGNFIS 271 (460)
Q Consensus 198 ~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~---A~~r-gl--~~~~~~~d~ 271 (460)
+.+...++.-.+ ++|||||||.|.++-.++.+|. ..|+|+|++.-..-. +++- |. .+.......
T Consensus 105 ~rl~p~l~~L~g--------k~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv 174 (315)
T PF08003_consen 105 DRLLPHLPDLKG--------KRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV 174 (315)
T ss_pred HHHHhhhCCcCC--------CEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch
Confidence 345555543333 8999999999999999999986 579999999865432 2221 22 233333568
Q ss_pred cCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCC---C--------chhhhHHHHHHH
Q 012624 272 RQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS---S--------SRKNKSLLKVME 340 (460)
Q Consensus 272 ~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~---~--------~~e~~~~w~~i~ 340 (460)
+.+|. .++||+|+|..+++|. .++-..|+++...|+|||.+++.+......... | ..-...+-..+.
T Consensus 175 E~Lp~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 175 EDLPN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALK 252 (315)
T ss_pred hhccc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHH
Confidence 88887 7899999999988887 677789999999999999999887654332110 1 011122335566
Q ss_pred HHHHHhCeEEEe
Q 012624 341 EFTEKICWSLIA 352 (460)
Q Consensus 341 ~l~~~~~w~~~~ 352 (460)
.+.++.+|+.+-
T Consensus 253 ~wl~r~gF~~v~ 264 (315)
T PF08003_consen 253 NWLERAGFKDVR 264 (315)
T ss_pred HHHHHcCCceEE
Confidence 667777776544
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.21 E-value=9.3e-11 Score=112.08 Aligned_cols=97 Identities=15% Similarity=0.039 Sum_probs=72.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC--------CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp--------~~~~sFDlVvs~~~ 289 (460)
.+|||||||+|.++..++++......|+++|+++ |. ....+.+..+|....+ +.+++||+|+|..+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 6899999999999999998854446899999988 21 1123556666666642 56789999999753
Q ss_pred cccccccH-----------HHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 290 GIIWDKKE-----------GIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 290 l~~~~~d~-----------~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.++..++ ..+|+++.++|||||.|++..+..
T Consensus 127 -~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 127 -PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 3332221 358999999999999999987643
No 62
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.6e-10 Score=110.04 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=79.9
Q ss_pred HHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEee
Q 012624 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNF 269 (460)
Q Consensus 196 ~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~ 269 (460)
....+.+.+....+ .+|||||||+|..+..+++.......++++|+++++++.|+++ +. .+.+..+
T Consensus 60 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 60 MVAMMCELIEPRPG--------MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHhcCCCCC--------CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 44555566655444 7899999999999998887632235799999999999988764 33 2566666
Q ss_pred cccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 270 d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
|........++||+|++.....+. ..++.++|+|||++++...
T Consensus 132 d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 132 DGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEEc
Confidence 665544456799999998654443 2478899999999988653
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.21 E-value=4.8e-10 Score=113.52 Aligned_cols=93 Identities=20% Similarity=0.238 Sum_probs=68.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC----------CCeEEEeecccCCCCCCCCccEEEEc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----------LPAMIGNFISRQLPYPSLSFDMVHCA 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg----------l~~~~~~~d~~~Lp~~~~sFDlVvs~ 287 (460)
.+|||||||+|.++..+++++ .+++|+|+|+.|++.|+++. ..+.+...|...+ +++||+|+|.
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 699999999999999999886 58999999999999998762 1234444444333 5789999999
Q ss_pred cccccccccH-HHHHHHHHHhcCCCcEEEEE
Q 012624 288 QCGIIWDKKE-GIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 288 ~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 317 (460)
.+++|+.++. ..+++.+.+ +.+||.++..
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEEe
Confidence 9888885433 345666665 4566665533
No 64
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=3.9e-10 Score=113.59 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=79.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||||||+|.++..++++.+ ..+++++|. +.+++.++++ ++ ++.+...|..+.++++ +|+|+++.+++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh 226 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILY 226 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhh
Confidence 7999999999999999999864 368899997 6888877654 33 3556666665555543 69999888777
Q ss_pred cccccH-HHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 292 IWDKKE-GIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 292 ~~~~d~-~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
+|.++. ..+++++++.|||||++++.+....
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 775433 5699999999999999999987543
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.19 E-value=2.1e-10 Score=108.25 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=78.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCC---CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP---YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp---~~~~sFDlVvs~~~ 289 (460)
.+|||||||+|.++..++.+.+ ...++|+|+++.+++.|+++ ++ ++.+..+|...++ +++++||.|++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 6899999999999999998854 36899999999999988654 33 4566666665543 45679999998863
Q ss_pred cccccccH--------HHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKE--------GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.+|.... ..+++++.|+|||||.|++...
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4453221 4589999999999999999875
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.17 E-value=2.8e-10 Score=109.76 Aligned_cols=99 Identities=25% Similarity=0.393 Sum_probs=80.9
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCC-CCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLP-YPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp-~~~~sFDlVvs~~~l~~ 292 (460)
.+|||||||+|.++..+++.+ ..++++|+++.+++.++++ +..+.+...+...++ ..++.||+|++..++.+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 689999999999999998875 5799999999999988765 444556555555554 34578999999986666
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
. .+...+++++.++|+|||.+++..+.
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 127 V-PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 6 67778999999999999999998764
No 67
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.14 E-value=6.1e-11 Score=112.44 Aligned_cols=136 Identities=20% Similarity=0.241 Sum_probs=96.2
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-C-CCCCCccEEEEcccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-P-YPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-p-~~~~sFDlVvs~~~l~~~~ 294 (460)
.+++||+|||||..+..|.+.- ..++|+|+|++|++.|.++++--...+++.... + ..+..||+|++..++..+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl- 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL- 201 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh-
Confidence 4799999999999999998763 578999999999999999987555444443322 2 346789999999965555
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCC---CchhhhHHHHHHHHHHHHhCeEEEeeecc
Q 012624 295 KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKNKSLLKVMEEFTEKICWSLIAQQDE 356 (460)
Q Consensus 295 ~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~---~~~e~~~~w~~i~~l~~~~~w~~~~~~~~ 356 (460)
.+.+.++.-+...|+|||.|.++.-.....+.. +..-.--...-+..+.+..+++++.....
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 678889999999999999999986433222111 00000011233566677788887665433
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=1.2e-09 Score=109.39 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=72.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++.+. .+++++|+++.+++.|+++ ++...+........+..+++||+|+++.. .
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~-- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-A-- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-H--
Confidence 7899999999999999888763 5899999999999998775 33222221111123344678999999752 2
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+....++.++.++|||||+++++...
T Consensus 236 -~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 -EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 23346899999999999999999863
No 69
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=6.1e-10 Score=106.61 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEe
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~ 268 (460)
......+.+.+...++ .+|||||||+|.++..+++......+++++|+++++++.|+++ +. ++.+..
T Consensus 62 p~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~ 133 (212)
T PRK13942 62 IHMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV 133 (212)
T ss_pred HHHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 3455566666666555 7999999999999998887633335899999999999998775 33 466777
Q ss_pred ecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 269 ~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+|......+.+.||+|++.....+ ....+.+.|||||++++...
T Consensus 134 gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEEc
Confidence 776655556789999998754322 23467789999999988653
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.13 E-value=1.8e-09 Score=100.98 Aligned_cols=115 Identities=22% Similarity=0.140 Sum_probs=82.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||||||+|.++..+++++. ..+++++|+++.+++.|+++ ++ .+.+...+.. .++ .++||+|++....
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~-- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG-- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCc--
Confidence 7899999999999999998753 36899999999999988764 32 3445544442 233 3679999987532
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEE
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~ 351 (460)
.....++.++.++|+|||++++..... .....+..+.++.+|+.+
T Consensus 108 --~~~~~~l~~~~~~Lk~gG~lv~~~~~~------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 108 --GNLTAIIDWSLAHLHPGGRLVLTFILL------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred --cCHHHHHHHHHHhcCCCeEEEEEEecH------------hhHHHHHHHHHHCCCCcc
Confidence 234568999999999999999876421 223445566777777543
No 71
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.13 E-value=3.8e-10 Score=106.19 Aligned_cols=94 Identities=29% Similarity=0.324 Sum_probs=72.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC-C-CCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-L-PYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~-L-p~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+|||||||+|.++..+++... ..++|+|+++++++.++++++.+...+ ... + ++++++||+|+++.+++|. .
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d--~~~~l~~~~~~sfD~Vi~~~~l~~~-~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGD--LDEGLEAFPDKSFDYVILSQTLQAT-R 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEE--hhhcccccCCCCcCEEEEhhHhHcC-c
Confidence 6899999999999999876632 467899999999999988776655444 333 4 4778899999999876666 6
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
++..+++++.|++++ .+++.+
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcC
Confidence 788899999887654 444443
No 72
>PLN03075 nicotianamine synthase; Provisional
Probab=99.12 E-value=7.1e-10 Score=110.73 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=78.9
Q ss_pred CCeEEEeCCCCchHHHH-HHhccCceeEEEEeeCCHHHHHHHHHc-----C--CCeEEEeecccCCCCCCCCccEEEEcc
Q 012624 217 VQSVLDVGCGFGSFGAH-LVSLKLMAVCVAVYEATGSQVQLALER-----G--LPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~-La~~~~~~~~v~giD~s~~~l~~A~~r-----g--l~~~~~~~d~~~Lp~~~~sFDlVvs~~ 288 (460)
+++|+|||||.|.++.. ++.......+++++|.++++++.|++. + -.+.|..+|..+.+-..+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 48999999997755444 343334456899999999999998764 2 23667777766654335789999999
Q ss_pred cccccc-ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 289 CGIIWD-KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 289 ~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
++++|. ++..++++++.+.|+|||++++...
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 788885 6778899999999999999999873
No 73
>PRK04266 fibrillarin; Provisional
Probab=99.12 E-value=2.1e-09 Score=104.00 Aligned_cols=129 Identities=17% Similarity=0.118 Sum_probs=81.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---CCCeEEEeecccC----CCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQ----LPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---gl~~~~~~~d~~~----Lp~~~~sFDlVvs~~~l 290 (460)
.+|||+|||+|.++..+++... ...|+++|+++.|++.+.++ ..++.+...|... .++ .++||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDVA- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECCC-
Confidence 7999999999999999998742 35899999999988754332 1234444444432 122 356999986421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
.......++++++|+|||||.++++.+........ ......+......++.+|+.+...
T Consensus 151 --~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~---~~~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 151 --QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK---DPKEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred --ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC---CHHHHHHHHHHHHHHcCCeEEEEE
Confidence 11122346899999999999999964432111111 111222333466677788876543
No 74
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.11 E-value=1e-09 Score=105.15 Aligned_cols=109 Identities=22% Similarity=0.179 Sum_probs=79.9
Q ss_pred HHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeec
Q 012624 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFI 270 (460)
Q Consensus 196 ~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d 270 (460)
....+.+.+....+ .+|||||||+|.++..|++.......++++|+++.+++.|+++ ++ ++.+...|
T Consensus 65 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 65 MVAMMTELLELKPG--------MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHhCCCCc--------CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 44566666665554 7999999999999999998743335699999999999998765 33 35566666
Q ss_pred ccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 271 ~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
........+.||+|++.....+ +...+.+.|||||++++...
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cccCCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEEc
Confidence 5544334568999998754322 34567899999999998653
No 75
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.11 E-value=3.9e-10 Score=118.01 Aligned_cols=126 Identities=19% Similarity=0.456 Sum_probs=103.3
Q ss_pred CCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccc-
Q 012624 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD- 294 (460)
Q Consensus 216 ~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~- 294 (460)
..+.|+|...|.|.|++.|.+..+.+++|+.+ ..+..+...-+||+--.+.+. .+.++.-+++||+||+...+-.+.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhhcc
Confidence 46899999999999999999998888999888 456677777789887777776 677887789999999997555553
Q ss_pred -ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeecc
Q 012624 295 -KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDE 356 (460)
Q Consensus 295 -~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~~ 356 (460)
-+...+|.|+.|+|||||++++.+. .....+++.+++++.|+....+.+
T Consensus 443 rC~~~~illEmDRILRP~G~~iiRD~-------------~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 443 RCEMEDILLEMDRILRPGGWVIIRDT-------------VDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred cccHHHHHHHhHhhcCCCceEEEecc-------------HHHHHHHHHHHHhCcceEEEEecC
Confidence 2345689999999999999999876 345667888999999998766543
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.11 E-value=5.3e-10 Score=106.94 Aligned_cols=101 Identities=27% Similarity=0.352 Sum_probs=81.5
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCCC-CCCccEEEEcccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYP-SLSFDMVHCAQCG 290 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~~-~~sFDlVvs~~~l 290 (460)
..+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. .+.+...+..+++.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3689999999999999998865 3589999999999988764 33 356666666666543 3789999999865
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.+. .++..++.++.++|+|||.+++.++..
T Consensus 123 ~~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHV-PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhC-CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 555 688889999999999999999987643
No 77
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.10 E-value=9.6e-10 Score=105.83 Aligned_cols=97 Identities=21% Similarity=0.034 Sum_probs=75.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH-HcCC----------------CeEEEeecccCCCCC-CC
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGL----------------PAMIGNFISRQLPYP-SL 279 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~-~rgl----------------~~~~~~~d~~~Lp~~-~~ 279 (460)
.+|||+|||.|..+..|+++| .+|+|+|+|+..++.+. ++++ .+.+..+|...++.. .+
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 689999999999999999987 68999999999999763 3443 344556666666432 25
Q ss_pred CccEEEEcccccccccc-HHHHHHHHHHhcCCCcEEEEE
Q 012624 280 SFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 280 sFDlVvs~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~ 317 (460)
.||+|+-..+++++.++ ...+++.+.++|||||.+++.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 89999988777777543 357999999999999975543
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.10 E-value=2.8e-09 Score=98.50 Aligned_cols=100 Identities=25% Similarity=0.281 Sum_probs=74.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||+|||+|..+..+++++.. ..++++|+++.+++.+++. ++. +.+...|... +.++++||+|+|+--+..
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SBT
T ss_pred CeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchhc
Confidence 78999999999999999998653 5799999999999988764 444 5565555433 234789999999853222
Q ss_pred ccc----cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 293 WDK----KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 293 ~~~----d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
-.. -...++++..+.|||||.+++...
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 211 235689999999999999987665
No 79
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.08 E-value=1.9e-10 Score=110.07 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCC------CeEEEeecccCCCCCCCCccEEEEcccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL------PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl------~~~~~~~d~~~Lp~~~~sFDlVvs~~~l 290 (460)
.+.++|+|||+|..++.+++.. -+|+++|+|++|++.|++... +......+...|--.+++.|+|+|..|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa- 109 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA- 109 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh-
Confidence 3589999999996666666653 589999999999999976521 122222223333334899999999985
Q ss_pred ccccccHHHHHHHHHHhcCCCc-EEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGG-YFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG-~lvl~~~ 319 (460)
.||. |.++++++++|+||+.| .+++-.-
T Consensus 110 ~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 110 VHWF-DLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred HHhh-chHHHHHHHHHHcCCCCCEEEEEEc
Confidence 7885 66779999999998766 6665544
No 80
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.08 E-value=1.1e-09 Score=105.00 Aligned_cols=91 Identities=26% Similarity=0.292 Sum_probs=70.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++ +. .+.+...| ++..+++||+|++..+++
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhh
Confidence 689999999999999999876 4699999999999999876 22 34555554 445568899999998877
Q ss_pred ccc-ccHHHHHHHHHHhcCCCcEE
Q 012624 292 IWD-KKEGIFLIEADRLLKPGGYF 314 (460)
Q Consensus 292 ~~~-~d~~~~L~ei~RvLkPGG~l 314 (460)
|+. ++...+++++.+.+++|+.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEE
Confidence 874 34456888888877654443
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=1.2e-09 Score=112.01 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=76.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++++. ..+++++|+|+.+++.|+++ ++...+...|... ..++.||+|+|+-.++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 5799999999999999998753 35799999999999988753 4555555444433 236789999998644332
Q ss_pred c----ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 294 D----KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ~----~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. .....+++++.+.|||||.+++...
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 1 2345789999999999999999875
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=99.07 E-value=5.4e-09 Score=96.77 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=83.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEeecccCCCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~---~~~~~~d~~~Lp~~~~sFDlVvs~~~l 290 (460)
.+|||+|||+|.++..+++++ .+++++|.|+.+++.++++ +.. +.+...|... ++.+++||+|+++...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 689999999999999999884 6899999999999988654 322 4454444433 3455689999987433
Q ss_pred cccc--------------------ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEE
Q 012624 291 IIWD--------------------KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSL 350 (460)
Q Consensus 291 ~~~~--------------------~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~ 350 (460)
.+.. .....+++++.++|||||.+++..+.... -+.+..+.++.+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~------------~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG------------EDEVLEYLEKLGFEA 168 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC------------HHHHHHHHHHCCCee
Confidence 2210 11345799999999999999887653211 123455666677766
Q ss_pred Ee
Q 012624 351 IA 352 (460)
Q Consensus 351 ~~ 352 (460)
..
T Consensus 169 ~~ 170 (188)
T PRK14968 169 EV 170 (188)
T ss_pred ee
Confidence 43
No 83
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.07 E-value=5.3e-09 Score=98.86 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=82.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccC-CCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~-Lp~~~~sFDlVvs~~~l 290 (460)
.+|||+|||+|.++..++.......+++++|+++.+++.++++ ++ .+.+...|..+ ++..++.||.|++..
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~-- 119 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG-- 119 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC--
Confidence 7899999999999998876522335899999999999988655 32 34555555544 233346899999853
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEE
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSL 350 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~ 350 (460)
. ..+...+++++.++|||||++++.... ......+....++.+|+.
T Consensus 120 -~-~~~~~~~l~~~~~~LkpgG~lv~~~~~------------~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 120 -G-SEKLKEIISASWEIIKKGGRIVIDAIL------------LETVNNALSALENIGFNL 165 (198)
T ss_pred -C-cccHHHHHHHHHHHcCCCcEEEEEeec------------HHHHHHHHHHHHHcCCCe
Confidence 1 245567999999999999999975542 122344455556677643
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=99.06 E-value=2e-09 Score=103.59 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=74.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++.+. .+++++|+++.+++.++++ +..+.+...|... .+++++||+|+++-....-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 6899999999999999988752 4899999999999987664 4555666665544 2456799999997321111
Q ss_pred cc--------------------cHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 294 DK--------------------KEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 294 ~~--------------------d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.. ....+++++.++|||||.+++....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 00 1245788999999999999987653
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.05 E-value=5.8e-09 Score=102.27 Aligned_cols=113 Identities=26% Similarity=0.298 Sum_probs=80.9
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+ .++..+.+||+|+++.. .
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~-~-- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANIL-A-- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCc-H--
Confidence 7899999999999998887764 3599999999999998775 221111 12222337999998742 1
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
+....++.++.++|||||++++++... ...+.+....++.+|+.....
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILE------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcH------------hhHHHHHHHHHHCCCEEEEEE
Confidence 223468899999999999999997632 123445666677888876543
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=1.6e-09 Score=112.05 Aligned_cols=100 Identities=28% Similarity=0.362 Sum_probs=79.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCC--CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL--PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~L--p~~~~sFDlVvs~~~l 290 (460)
..+||||||+|.++..++.+.+ ...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .++++++|.|++.+ -
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-P 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-P 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-C
Confidence 5899999999999999999864 46899999999998877554 44 355666666543 47789999999875 3
Q ss_pred ccccccH------HHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKE------GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~------~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
..|.... ..++.++.|+|+|||.+.+.+-
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5564322 4689999999999999999765
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=3.7e-09 Score=107.79 Aligned_cols=100 Identities=23% Similarity=0.163 Sum_probs=77.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCCCCCCCccEEEEccc--c
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQC--G 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp~~~~sFDlVvs~~~--l 290 (460)
.+|||+|||+|.++..++..+ ..++|+|+++.|++.|+++ ++. +.+...|..++++++++||+|++.-. .
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 789999999999998877654 5799999999999987654 333 45667788888888899999999621 0
Q ss_pred ---ccc--c-ccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 291 ---IIW--D-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 291 ---~~~--~-~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
... . +-...++.++.++|||||++++..+.
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 000 1 11356899999999999999998874
No 88
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.03 E-value=8e-10 Score=94.63 Aligned_cols=100 Identities=33% Similarity=0.412 Sum_probs=77.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCC--CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp--~~~~sFDlVvs~~~ 289 (460)
.+|||+|||+|.++..+++.+ ..+++++|+++..++.|+.+ +. ++.+...|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999987 47899999999999998765 22 5677777776664 77899999999743
Q ss_pred ccccc-------ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWD-------KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~-------~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
..... .....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33221 1224689999999999999998765
No 89
>PTZ00146 fibrillarin; Provisional
Probab=99.02 E-value=5.3e-09 Score=104.21 Aligned_cols=130 Identities=17% Similarity=0.085 Sum_probs=82.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHH----HHHHHHHcCCCeEEEeecccC---CCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS----QVQLALERGLPAMIGNFISRQ---LPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~----~l~~A~~rgl~~~~~~~d~~~---Lp~~~~sFDlVvs~~~l 290 (460)
.+|||+|||+|.++.++++.....-.|+++|+++. +++.++++ .++.....|... +.....+||+|++.. .
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv-a 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV-A 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC-C
Confidence 79999999999999999987433357999999986 45555543 233333344322 222345899999875 2
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
. +++...++.++.++|||||+|++...... .+..++.+..-. +++ ...++.+|+.+.+.
T Consensus 212 -~-pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~~pe~~f~-~ev-~~L~~~GF~~~e~v 270 (293)
T PTZ00146 212 -Q-PDQARIVALNAQYFLKNGGHFIISIKANC-IDSTAKPEVVFA-SEV-QKLKKEGLKPKEQL 270 (293)
T ss_pred -C-cchHHHHHHHHHHhccCCCEEEEEEeccc-cccCCCHHHHHH-HHH-HHHHHcCCceEEEE
Confidence 2 23444577899999999999999543322 222222232222 334 44566777765443
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.01 E-value=3.2e-09 Score=106.97 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=73.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------CCCeEEEeecccC-CCCCCCC----ccEEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GLPAMIGNFISRQ-LPYPSLS----FDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------gl~~~~~~~d~~~-Lp~~~~s----FDlVvs 286 (460)
.+|||+|||+|..+..|++......+++++|+|++|++.|+++ ++++....+|..+ ++++... ..++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 6899999999999999998743236899999999999988765 3445555566544 3333322 223333
Q ss_pred cccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 287 AQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 287 ~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
...+.++. ++...+|++++++|+|||.|++.....
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 33344443 334579999999999999999876544
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.01 E-value=3e-09 Score=110.06 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=73.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC----CeEEEeecccCCCCCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL----PAMIGNFISRQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl----~~~~~~~d~~~Lp~~~~sFDlVvs~~~ 289 (460)
.+|||+|||+|.++..++++++ ..+++++|+|+.+++.|+++ +. .+.+...|... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 5899999999999999998864 36899999999999999764 21 23444333322 134568999999853
Q ss_pred cccc---cc-cHHHHHHHHHHhcCCCcEEEEEe
Q 012624 290 GIIW---DK-KEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 290 l~~~---~~-d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
++.. .+ ...+++++++++|||||.|++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3221 11 12468999999999999999995
No 92
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.01 E-value=1e-09 Score=100.50 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=65.4
Q ss_pred EEeeCCHHHHHHHHHcC--------CCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEE
Q 012624 245 AVYEATGSQVQLALERG--------LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316 (460)
Q Consensus 245 ~giD~s~~~l~~A~~rg--------l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl 316 (460)
+|+|+|++|++.|+++. .++.+..+|.+++|+++++||+|++.++++++ ++...+++|++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 47899999999997541 14678888999999999999999999876666 6888999999999999999999
Q ss_pred EeCCC
Q 012624 317 TSPES 321 (460)
Q Consensus 317 ~~~~~ 321 (460)
.+...
T Consensus 80 ~d~~~ 84 (160)
T PLN02232 80 LDFNK 84 (160)
T ss_pred EECCC
Confidence 98754
No 93
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.99 E-value=3.6e-09 Score=99.87 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=72.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
..|-|+|||.+.++..+... ..|...|.-.. +.. +...|+..+|+++++.|++++...++. .+.
T Consensus 74 ~viaD~GCGdA~la~~~~~~----~~V~SfDLva~--------n~~--Vtacdia~vPL~~~svDv~VfcLSLMG--Tn~ 137 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP--------NPR--VTACDIANVPLEDESVDVAVFCLSLMG--TNW 137 (219)
T ss_dssp S-EEEES-TT-HHHHH--S-------EEEEESS-S--------STT--EEES-TTS-S--TT-EEEEEEES---S--S-H
T ss_pred EEEEECCCchHHHHHhcccC----ceEEEeeccCC--------CCC--EEEecCccCcCCCCceeEEEEEhhhhC--CCc
Confidence 68999999999999776432 46777787542 222 444677899999999999998765554 577
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeecce
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDET 357 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~~~ 357 (460)
..+++|+.|+|||||.|.+.+..... ..-+.+....+++||++..++..+
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d~~n 187 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKDESN 187 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE--S
T ss_pred HHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEecccCC
Confidence 88999999999999999999975432 223445566789999998875433
No 94
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=4.9e-09 Score=85.01 Aligned_cols=97 Identities=32% Similarity=0.358 Sum_probs=74.0
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----CCCeEEEeecccCCCC-CCCCccEEEEcccccc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAMIGNFISRQLPY-PSLSFDMVHCAQCGII 292 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----gl~~~~~~~d~~~Lp~-~~~sFDlVvs~~~l~~ 292 (460)
+++|+|||+|.++..+++. ...+++++|.++.+++.+++. .....+...+...... ..++||+|++..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999873 236899999999999888722 1234444455554442 4678999999975554
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEE
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~ 317 (460)
+......+++.+.+.|+|||.+++.
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2466778999999999999999886
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.97 E-value=1.6e-08 Score=98.17 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=83.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||+|||+|.++..+++... ...++++|+++.+++.|+++ ++. +.+...|... ++++++||+|+++-....
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 5899999999999999998742 35899999999999988764 443 5566666544 456789999998532111
Q ss_pred ------ccc-------------------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhC
Q 012624 293 ------WDK-------------------KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC 347 (460)
Q Consensus 293 ------~~~-------------------d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~ 347 (460)
+.. ....++.++.++|+|||.+++..... .-+.+.++.++.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-------------~~~~~~~~l~~~g 233 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-------------QGEAVRALFEAAG 233 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-------------HHHHHHHHHHhCC
Confidence 100 11357889999999999999875311 1133455566677
Q ss_pred eEEEe
Q 012624 348 WSLIA 352 (460)
Q Consensus 348 w~~~~ 352 (460)
|+.+.
T Consensus 234 f~~v~ 238 (251)
T TIGR03534 234 FADVE 238 (251)
T ss_pred CCceE
Confidence 75443
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1e-08 Score=102.30 Aligned_cols=116 Identities=25% Similarity=0.322 Sum_probs=83.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCe--EEEeecccCCCCCC-CCccEEEEcccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA--MIGNFISRQLPYPS-LSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~--~~~~~d~~~Lp~~~-~sFDlVvs~~~l 290 (460)
++|||+|||+|.++...++.|. ..+.|+|+++-.++.|+++ ++.. .....+ .+..+. +.||+|+++- +
T Consensus 164 ~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~--~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL--LLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhccccc--chhhcccCcccEEEehh-h
Confidence 7999999999999999999986 5799999999999988775 4442 122111 122333 5999999984 3
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
-.. ...+..++.+.|||||+++++.... ..-+.+....++.+|.+.-.
T Consensus 239 A~v---l~~La~~~~~~lkpgg~lIlSGIl~------------~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 AEV---LVELAPDIKRLLKPGGRLILSGILE------------DQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HHH---HHHHHHHHHHHcCCCceEEEEeehH------------hHHHHHHHHHHhCCCeEeEE
Confidence 222 2368899999999999999999632 11234455556667777554
No 97
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.94 E-value=7.9e-09 Score=96.76 Aligned_cols=96 Identities=20% Similarity=0.106 Sum_probs=67.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC--------CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp--------~~~~sFDlVvs~~~ 289 (460)
.+|||+|||+|.++..++++......++++|+++.+ ...+ +.+...|..+.+ +++++||+|++..+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~--i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIEN--VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCC--ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 789999999999999998874334579999999865 1123 444444544432 45678999998642
Q ss_pred cc---cccc-------cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GI---IWDK-------KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~---~~~~-------d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. .|.. +...++.++.++|+|||++++...
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 11 1111 125689999999999999999754
No 98
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=5.5e-09 Score=100.12 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccC-ceeEEEEeeCCHHHHHHHHHcC------CCeEE
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL-MAVCVAVYEATGSQVQLALERG------LPAMI 266 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~-~~~~v~giD~s~~~l~~A~~rg------l~~~~ 266 (460)
.-..+.+-+.++.... ...+|||||||.|...-.+.+... ....+.+.|.|+..++..+++. ....+
T Consensus 55 ~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv 128 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFV 128 (264)
T ss_pred HHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccc
Confidence 3344455555554332 224899999999999988887632 2378999999999999887662 22334
Q ss_pred EeecccC--CCCCCCCccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 267 GNFISRQ--LPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 267 ~~~d~~~--Lp~~~~sFDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
.+++... -+...+++|.|++++++..+. +....++.+++++|||||.+++.|-..+.
T Consensus 129 ~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 129 WDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred eeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 4443333 356789999999999887775 44567999999999999999999987643
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.92 E-value=1.8e-08 Score=95.04 Aligned_cols=108 Identities=21% Similarity=0.191 Sum_probs=75.8
Q ss_pred HHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccC
Q 012624 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ 273 (460)
Q Consensus 199 ~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~ 273 (460)
.+.+.+....+ .+|||+|||+|.++..+++... ...++++|.++.+++.++++ ++ ++.+...|...
T Consensus 31 ~l~~~l~~~~~--------~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 31 LLISQLRLEPD--------SVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 34555554443 7899999999999999986532 36899999999999988764 33 34555555432
Q ss_pred -CCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 274 -LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 274 -Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
++.....+|.++... ..+...+++++.++|+|||++++..+.
T Consensus 102 ~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 222223467765431 134567999999999999999999863
No 100
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.4e-09 Score=102.89 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCe-EE
Q 012624 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA-MI 266 (460)
Q Consensus 192 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~-~~ 266 (460)
..+.=.+.+.+.++.... .+|||+|||.|.++..+++..+ ...++.+|++...++.|++. ++.. .+
T Consensus 142 ~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v 212 (300)
T COG2813 142 KLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEV 212 (300)
T ss_pred CcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEE
Confidence 344456677777776654 5899999999999999999975 47899999999999999765 3443 22
Q ss_pred EeecccCCCCCCCCccEEEEccccccccccH----HHHHHHHHHhcCCCcEEEEEeC
Q 012624 267 GNFISRQLPYPSLSFDMVHCAQCGIIWDKKE----GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 267 ~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~----~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+ .-.+..+ +||+|+|+=-++.-..-. .+++.+..+.|++||.|.+...
T Consensus 213 ~~s~-~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 213 WASN-LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEec-ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2222 2233334 899999985433222222 2689999999999999999886
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.92 E-value=1.7e-08 Score=96.23 Aligned_cols=106 Identities=22% Similarity=0.153 Sum_probs=75.6
Q ss_pred HHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeec
Q 012624 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFI 270 (460)
Q Consensus 196 ~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d 270 (460)
....+.+.+....+ .+|||||||+|.++..+++.. ..++++|+++++++.|+++ ++ .+.+...|
T Consensus 66 ~~~~l~~~l~~~~~--------~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 66 MVARMTELLELKPG--------DRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred HHHHHHHhcCCCCC--------CEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 34445555555444 799999999999998887764 3789999999999988765 33 35555555
Q ss_pred ccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 271 ~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
........++||+|++.....+ +..++.+.|+|||.+++...
T Consensus 135 ~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 135 GWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 4332223478999999754322 34567899999999998765
No 102
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.90 E-value=1.1e-08 Score=102.63 Aligned_cols=117 Identities=25% Similarity=0.281 Sum_probs=81.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++...++.|. ..+.++|+++..++.|+++ ++...+..... .....+.||+|+++- +.+
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~~~~~~~~dlvvANI-~~~- 236 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--EDLVEGKFDLVVANI-LAD- 236 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--SCTCCS-EEEEEEES--HH-
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--cccccccCCEEEECC-CHH-
Confidence 6999999999999999999875 4799999999999988776 44443332212 223458999999984 222
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeec
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQD 355 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~ 355 (460)
-...++..+.++|+|||+++++.... .+.+.+....++ +|+......
T Consensus 237 --vL~~l~~~~~~~l~~~G~lIlSGIl~------------~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 237 --VLLELAPDIASLLKPGGYLILSGILE------------EQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp --HHHHHHHHCHHHEEEEEEEEEEEEEG------------GGHHHHHHHHHT-TEEEEEEEE
T ss_pred --HHHHHHHHHHHhhCCCCEEEEccccH------------HHHHHHHHHHHC-CCEEEEEEE
Confidence 22357888999999999999998732 222344444455 888766543
No 103
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.88 E-value=1.1e-08 Score=94.31 Aligned_cols=103 Identities=24% Similarity=0.279 Sum_probs=79.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~--~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||.|.+...|++.+.. ..++|+|.|+..++.|+.. +.. +.+.++|+..-.+..+.||+|+--..+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 49999999999999999999865 3489999999999877532 444 6788888777677788999998532211
Q ss_pred --ccc-----ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 292 --IWD-----KKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 292 --~~~-----~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
... ..+..++..+.++|+|||+|+|+.-+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 111 122357889999999999999998754
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.86 E-value=9.3e-08 Score=95.67 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=72.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEccc--
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQC-- 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~-- 289 (460)
.+|||+|||+|.++..+++... ..+++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+++--
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 6899999999999999998743 36899999999999988765 43 35566665432 234568999999610
Q ss_pred ----cc------cccc------------cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 ----GI------IWDK------------KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 ----l~------~~~~------------d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. +..+ ....++.++.++|+|||++++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 00 0000 113578899999999999998765
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=4e-08 Score=94.95 Aligned_cols=100 Identities=17% Similarity=-0.029 Sum_probs=82.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----------------CCCeEEEeecccCCCCC---
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----------------GLPAMIGNFISRQLPYP--- 277 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----------------gl~~~~~~~d~~~Lp~~--- 277 (460)
.+||+.|||.|.-+..|+++| .+|+|+|+|+..++.+.+. +..+.+..+|..+++..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 699999999999999999998 5799999999999987542 44567777788777632
Q ss_pred CCCccEEEEccccccccccH-HHHHHHHHHhcCCCcEEEEEeCC
Q 012624 278 SLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 278 ~~sFDlVvs~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.+.||+|+-..++++++++. .++.+.+.++|+|||.+++....
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 26899999887788886554 46899999999999999887653
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=98.82 E-value=8.6e-08 Score=94.76 Aligned_cols=128 Identities=11% Similarity=-0.005 Sum_probs=88.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc-
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK- 296 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d- 296 (460)
.+|||+|||+|.++..++.+.. ..+++++|+++.+++.++++...+.+...|...+. .+++||+|+++-...+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 6899999999999998877632 25899999999999999876445666667766654 35689999997655443211
Q ss_pred ------------------HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 297 ------------------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 297 ------------------~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
...++....++|+|+|.+.+.-...... ...-.-.++..+.+..++.+...
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y------~~sl~~~~y~~~l~~~g~~~~~~ 212 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY------DGTMKSNKYLKWSKQTGLVTYAG 212 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc------cccCCHHHHHHHHHhcCcEecCC
Confidence 1356778889999999887763221111 11112345667778888877554
No 107
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.82 E-value=3.9e-08 Score=103.80 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEE--Eeecc
Q 012624 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMI--GNFIS 271 (460)
Q Consensus 198 ~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~--~~~d~ 271 (460)
..+...+...++ .+|||+|||+|..+..+++... ...++++|+++.+++.++++ |+.+.+ .++|.
T Consensus 228 ~~~~~~L~~~~g--------~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 228 QWVATWLAPQNE--------ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHHHhCCCCC--------CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 345555655544 7999999999999999988643 46899999999999887655 555333 45555
Q ss_pred cCCCC--CCCCccEEEEc-----ccccccccc----------------HHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 272 RQLPY--PSLSFDMVHCA-----QCGIIWDKK----------------EGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 272 ~~Lp~--~~~sFDlVvs~-----~~l~~~~~d----------------~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
...++ ++++||.|++- ...++-.++ ...+|.++.++|||||.+++++....
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 44443 56789999952 112211111 24689999999999999999987554
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=3.8e-08 Score=103.89 Aligned_cols=103 Identities=23% Similarity=0.285 Sum_probs=76.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCC--CCCCCccEEEEcc---
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLP--YPSLSFDMVHCAQ--- 288 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp--~~~~sFDlVvs~~--- 288 (460)
.+|||+|||+|..+..+++.... ..++++|.++.+++.++++ |+.+.+...|...++ +.+++||.|++.-
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 78999999999999999987532 5899999999999988665 555666666766554 3467899999531
Q ss_pred -c-cc------ccccc----------HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 289 -C-GI------IWDKK----------EGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 289 -~-l~------~~~~d----------~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
. .. .|... ...++.++.++|||||++++++...
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 00 11111 1258999999999999999998644
No 109
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=1.1e-07 Score=93.69 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=71.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----CCCeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||+|||+|.++..++.... ...++++|+++.+++.|+++ ...+.+...|... ++++++||+|+++-....
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 6899999999999999998752 36899999999999998765 1245555555432 233578999998521110
Q ss_pred ------cc-------------------ccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 293 ------WD-------------------KKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 293 ------~~-------------------~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
.. +....++.++.++|+|||++++..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 00 112457888889999999999854
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.81 E-value=1.2e-07 Score=98.93 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=82.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCC-CCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPY-PSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~-~~~sFDlVvs~~~l~~ 292 (460)
.+|||+|||+|.++..++.... ..+++++|+|+.+++.|+++ +.++.+...|..+..+ .+++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 5899999999999999887632 36899999999999988765 4556676666544322 2458999999632111
Q ss_pred cc--------------------cc----HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCe
Q 012624 293 WD--------------------KK----EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (460)
Q Consensus 293 ~~--------------------~d----~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 348 (460)
-. ++ ...++.++.+.|+|||.+++.... .+-+.+..+.++.+|
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-------------~Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-------------DQGAAVRGVLAENGF 398 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-------------cHHHHHHHHHHHCCC
Confidence 00 01 124667778899999998876542 122355666666777
Q ss_pred EEEe
Q 012624 349 SLIA 352 (460)
Q Consensus 349 ~~~~ 352 (460)
..+.
T Consensus 399 ~~v~ 402 (423)
T PRK14966 399 SGVE 402 (423)
T ss_pred cEEE
Confidence 6543
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.81 E-value=5.3e-08 Score=98.96 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=77.2
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEee
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~ 269 (460)
.....+.+.+....+ .+|||||||+|.++..+++.......++++|.++++++.|+++ +. .+.+..+
T Consensus 67 ~l~a~ll~~L~i~~g--------~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g 138 (322)
T PRK13943 67 SLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG 138 (322)
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 344455555555444 7899999999999999988643223689999999999988764 43 3555666
Q ss_pred cccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 270 d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
|....+...++||+|++.....+ ....+.+.|+|||.+++..
T Consensus 139 D~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 139 DGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 65555444568999998753222 2335678999999998854
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.80 E-value=8.4e-08 Score=93.48 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=77.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------CCCeEEEeecccCCC--CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GLPAMIGNFISRQLP--YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------gl~~~~~~~d~~~Lp--~~~~sFDlVvs~~~ 289 (460)
.+|||+|||+|..+..++++... ..++++|+.+.+.+.|++. ..++.+...|..++. ....+||+|+|+=-
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 79999999999999999998433 7899999999999999765 224556666766654 33457999999721
Q ss_pred cccc-----------------cccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 290 GIIW-----------------DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 290 l~~~-----------------~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.+.- .-+.+.+++...++|||||++.+.-+.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 1111 123456788899999999999999873
No 113
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=1.1e-07 Score=100.48 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=76.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCC----CCCCCccEEEEc-
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP----YPSLSFDMVHCA- 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp----~~~~sFDlVvs~- 287 (460)
.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ .+.+...|...++ +.+++||.|++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~Da 333 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDA 333 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeC
Confidence 7899999999999999988632335899999999999888665 44 3566666776665 446789999962
Q ss_pred ---c-cccccccc----------------HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 288 ---Q-CGIIWDKK----------------EGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 288 ---~-~l~~~~~d----------------~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
. ...+-.++ ...+|.++.++|||||+++.++...
T Consensus 334 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 334 PCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 11111111 2467999999999999999988644
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.80 E-value=3.5e-08 Score=90.85 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=71.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeecccCCCCCCCCccEEEEcccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~ 294 (460)
.+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+...|..+++++++.||.|+++- -++..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~~ 90 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNIS 90 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-CcccH
Confidence 689999999999999999884 58999999999999998762 246777888888888777899999874 34442
Q ss_pred ccHHHHHHHHHHh--cCCCcEEEEEeC
Q 012624 295 KKEGIFLIEADRL--LKPGGYFVLTSP 319 (460)
Q Consensus 295 ~d~~~~L~ei~Rv--LkPGG~lvl~~~ 319 (460)
...+..+.+. +.++|.+++..-
T Consensus 91 ---~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 91 ---TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ---HHHHHHHHhcCCCcceEEEEEEHH
Confidence 1233333332 457888877654
No 115
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=5.6e-09 Score=99.16 Aligned_cols=138 Identities=13% Similarity=0.238 Sum_probs=107.7
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
...++|||||.|....++..+++ .+++-+|.|..|++.++.. ++.......|.+.++|.+++||+|+++. ..||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhh
Confidence 46899999999999999999985 5788999999999988754 5566677888999999999999999996 6899
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCCC---------------CCC-CchhhhHHHHHHHHHHHHhCeEEEeeecce
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPR---------------GSS-SSRKNKSLLKVMEEFTEKICWSLIAQQDET 357 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~---------------~~~-~~~e~~~~w~~i~~l~~~~~w~~~~~~~~~ 357 (460)
..+...-+.++...|||.|.|+-+-....-. +-+ +.-.....-..+..+..+.+|+++..+.+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDE 229 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDE 229 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecccc
Confidence 9888889999999999999998765543210 000 001122334556778889999998776554
No 116
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.78 E-value=9.9e-08 Score=95.36 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=72.9
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEeecccCCCCCCCCccEEEEccc--
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQC-- 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~--~~~~~~d~~~Lp~~~~sFDlVvs~~~-- 289 (460)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 5899999999999999998743 36899999999999988765 332 5666655443 344558999999610
Q ss_pred -------c---ccccc------------cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 -------G---IIWDK------------KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 -------l---~~~~~------------d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+ ..+.+ ....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0 01101 234578899999999999988765
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=1.5e-07 Score=99.98 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=75.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCCCCCCCccEEEEc----c
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCA----Q 288 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp~~~~sFDlVvs~----~ 288 (460)
.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+. +.+...|...++ ++++||+|++- .
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTG 330 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCC
Confidence 7899999999999988887532235899999999999888655 543 556666666654 46789999952 1
Q ss_pred -ccc------cccc----------cHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 289 -CGI------IWDK----------KEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 289 -~l~------~~~~----------d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
... .|.. ....+|.++.++|||||++++++....
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 110 1111 112589999999999999999987543
No 118
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.76 E-value=4.8e-08 Score=93.45 Aligned_cols=112 Identities=20% Similarity=0.111 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEe
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~ 268 (460)
......+.+.+..+++ .+|||||||+|.++..|+........|+++|..+...+.|+++ +. ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4566677777777766 8999999999999999998743445789999999999999776 44 455655
Q ss_pred ecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 269 ~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+|...---....||.|++....... + ..+.+.||+||++++-...
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~~i---p----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVPEI---P----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEESS
T ss_pred cchhhccccCCCcCEEEEeeccchH---H----HHHHHhcCCCcEEEEEEcc
Confidence 5544322245689999998643322 2 3467789999999986653
No 119
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.75 E-value=6.9e-08 Score=94.08 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=77.2
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
..++||||+|.|..+..++... .+|+++|.|..|....+++|..+.- ..++.-.+.+||+|.|.+++-.- ++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~----~~~w~~~~~~fDvIscLNvLDRc-~~ 166 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLD----IDDWQQTDFKFDVISCLNVLDRC-DR 166 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEe----hhhhhccCCceEEEeehhhhhcc-CC
Confidence 3689999999999999998763 5789999999999998888876442 22343345689999999855554 78
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
|..+|++|++.|+|+|.++++.-
T Consensus 167 P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 167 PLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEE
Confidence 88999999999999999998743
No 120
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.74 E-value=7e-08 Score=93.75 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=81.1
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
..+|||||+|+|.++..++++.+. .+++..|. +..++.+++ ..++.+..+|.. -++|. +|+++..+++++|.++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HH
T ss_pred ccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchH
Confidence 478999999999999999998654 68888998 778888877 667788777776 56665 9999999999999643
Q ss_pred H-HHHHHHHHHhcCCC--cEEEEEeCCCCCC
Q 012624 297 E-GIFLIEADRLLKPG--GYFVLTSPESKPR 324 (460)
Q Consensus 297 ~-~~~L~ei~RvLkPG--G~lvl~~~~~~~~ 324 (460)
. ..+|+++++.|+|| |++++.+......
T Consensus 175 ~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 175 DCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp HHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 3 46899999999999 9999999875443
No 121
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.73 E-value=3.8e-08 Score=100.33 Aligned_cols=103 Identities=31% Similarity=0.342 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---------------CCeEEEeecccC------CC
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------------LPAMIGNFISRQ------LP 275 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---------------l~~~~~~~d~~~------Lp 275 (460)
..+|||+|||-|.-..-....++ ..++|+|++...++.|++|- ..+.+..+|... ++
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 47999999998886666666654 68999999999999998873 223344444322 22
Q ss_pred CCCCCccEEEEccccccccccH---HHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 276 YPSLSFDMVHCAQCGIIWDKKE---GIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 276 ~~~~sFDlVvs~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.....||+|-|.+++|+..... ..+|+.+.+.|||||+|+.+.+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 2235999999999777665443 358999999999999999998753
No 122
>PRK04457 spermidine synthase; Provisional
Probab=98.71 E-value=1.3e-07 Score=93.59 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=80.1
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-C-----CCeEEEe
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-G-----LPAMIGN 268 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-g-----l~~~~~~ 268 (460)
.|.+.+...+.... .+++|||||||+|.++..+++.. ...+++++|+++++++.|++. + .++.+..
T Consensus 52 ~y~~~m~~~l~~~~-------~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~ 123 (262)
T PRK04457 52 AYTRAMMGFLLFNP-------RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIE 123 (262)
T ss_pred HHHHHHHHHHhcCC-------CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45555544443222 24789999999999999998874 347899999999999999876 1 2345555
Q ss_pred ecccC-CCCCCCCccEEEEcccc-ccccc--cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 269 FISRQ-LPYPSLSFDMVHCAQCG-IIWDK--KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 269 ~d~~~-Lp~~~~sFDlVvs~~~l-~~~~~--d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.|... +.-..++||+|++...- ..... ....+++++.++|+|||.+++...
T Consensus 124 ~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 124 ADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 55432 22224689999985210 11111 124799999999999999999654
No 123
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.5e-07 Score=88.79 Aligned_cols=108 Identities=26% Similarity=0.246 Sum_probs=85.2
Q ss_pred HHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeeccc
Q 012624 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISR 272 (460)
Q Consensus 199 ~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~ 272 (460)
.|...+...++ .+|||.|.|+|.++.+|+..-.....++.+|+.++..+.|+++ ++ .+.+...|..
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 45566666666 8999999999999999997533346899999999999999876 22 2555556666
Q ss_pred CCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 273 ~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+.-+++ .||+|+.-. +++-.++..++++|||||.+++..|..
T Consensus 157 ~~~~~~-~vDav~LDm------p~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 157 EGIDEE-DVDAVFLDL------PDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cccccc-ccCEEEEcC------CChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 655544 899998753 566679999999999999999999865
No 124
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.70 E-value=2.7e-07 Score=87.40 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=87.5
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHH----HHHHcCCC----eEEEeecccCCCC------CCCCccEE
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ----LALERGLP----AMIGNFISRQLPY------PSLSFDMV 284 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~----~A~~rgl~----~~~~~~d~~~Lp~------~~~sFDlV 284 (460)
+|||||||||..+.+++++-+ .......|..+.... +..+.+++ ....++.....+. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 699999999999999999843 467888888877642 23333332 1222332222343 35689999
Q ss_pred EEcccccccc--ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCc---------------hhhhHHHHHHHHHHHHhC
Q 012624 285 HCAQCGIIWD--KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSS---------------RKNKSLLKVMEEFTEKIC 347 (460)
Q Consensus 285 vs~~~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~---------------~e~~~~w~~i~~l~~~~~ 347 (460)
+|.. ++|+. ...+.+|+.+.++|+|||.|++..|.... +.... .-.....+.+..++++.+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~-G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD-GKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC-CEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 9998 56664 33456899999999999999999997643 22111 111222356777788877
Q ss_pred eEEEee
Q 012624 348 WSLIAQ 353 (460)
Q Consensus 348 w~~~~~ 353 (460)
+++...
T Consensus 185 L~l~~~ 190 (204)
T PF06080_consen 185 LELEED 190 (204)
T ss_pred CccCcc
Confidence 776543
No 125
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=1.1e-07 Score=96.30 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=72.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.++..++.... ..+++++|+|+.+++.|+++ ++ ++.+...|... ++++++||+|+++--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 5899999999999999998742 36899999999999988765 43 35666666432 23456899999961000
Q ss_pred ------------cccc------------cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 292 ------------IWDK------------KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 292 ------------~~~~------------d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
++.+ ....+++++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1101 113578999999999999998644
No 126
>PRK00811 spermidine synthase; Provisional
Probab=98.70 E-value=1.4e-07 Score=94.41 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=73.3
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----------CCCeEEEeecccC-CCCCCCCccEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----------GLPAMIGNFISRQ-LPYPSLSFDMVH 285 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----------gl~~~~~~~d~~~-Lp~~~~sFDlVv 285 (460)
+++|||||||+|..+..+++.. ...+++++|+++.+++.|++. ..++.+...|... +...+++||+|+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4799999999999999998862 235899999999999999864 1234455555433 223467899999
Q ss_pred Ecccccccccc----HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 286 CAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 286 s~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.. ..++... ...+++++.+.|+|||.+++...
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 853 2233211 24678999999999999987643
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=1.5e-07 Score=99.50 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=77.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCC-CCCCCccEEEEc----
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVHCA---- 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp-~~~~sFDlVvs~---- 287 (460)
.+|||+|||+|..+.++++.......++++|+++.+++.++++ |+. +.+...|...++ +.+++||.|++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 7899999999999999988632336899999999999988765 543 456666766665 456789999962
Q ss_pred c-ccccccc----------------cHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 288 Q-CGIIWDK----------------KEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 288 ~-~l~~~~~----------------d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
. ....-.+ ...++|.++.+.|||||.+++++....
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1 1111111 113468999999999999999987543
No 128
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.69 E-value=1.2e-07 Score=91.64 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=81.0
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
...|-|+|||.+.++.. .. ..|+..|... ++-.+...|+.++|.++++.|++++..++ +..+
T Consensus 181 ~~vIaD~GCGEakiA~~---~~---~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS---ER---HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFCLSL--MGTN 242 (325)
T ss_pred ceEEEecccchhhhhhc---cc---cceeeeeeec----------CCCceeeccccCCcCccCcccEEEeeHhh--hccc
Confidence 46899999999988762 11 3566667643 12234445678899999999999986443 3368
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeecce
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDET 357 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~~~ 357 (460)
...+++|++|+|||||.+++.+...... + -..+..-.+.+||.....+..+
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~-------d---v~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFS-------D---VKGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcc-------c---HHHHHHHHHHcCCeeeehhhhc
Confidence 8889999999999999999999754331 1 1224555678999987776554
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.67 E-value=1.3e-07 Score=93.64 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=74.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCCCCCCccEEEEcc----
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQ---- 288 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~~~~sFDlVvs~~---- 288 (460)
.+|||+|||+|..+..+++.......++++|+++.+++.++++ ++ .+.+...|...++...+.||.|++.-
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 7899999999999999887632234799999999999888665 43 34566666666555556799999621
Q ss_pred -cccc--------ccc--------cHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 289 -CGII--------WDK--------KEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 289 -~l~~--------~~~--------d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.... +.+ ....+|+++.++|||||+++.++...
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 0010 110 11248999999999999999988644
No 130
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=3.8e-07 Score=96.77 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=73.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCC--CCCCCccEEEEccc-
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP--YPSLSFDMVHCAQC- 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp--~~~~sFDlVvs~~~- 289 (460)
.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+. +.+...|...++ ++ ++||+|++.--
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pc 330 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPC 330 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCC
Confidence 7899999999999999988632236899999999999888664 432 556666665543 33 78999997421
Q ss_pred ----cc-c-----cc---cc-------HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 290 ----GI-I-----WD---KK-------EGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 290 ----l~-~-----~~---~d-------~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.. + |. .+ ...++.++.++|||||.+++++...
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 00 0 10 01 1247999999999999999887643
No 131
>PRK01581 speE spermidine synthase; Validated
Probab=98.67 E-value=4.6e-07 Score=92.85 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------------CCCeEEEeecccC-CCCCCCCccE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------------GLPAMIGNFISRQ-LPYPSLSFDM 283 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------------gl~~~~~~~d~~~-Lp~~~~sFDl 283 (460)
+++||+||||+|..+..+++.. ...+++.+|+++++++.|++. ..++.+...|... +.-.++.||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 4799999999999999988763 346899999999999999861 2244454444443 3334568999
Q ss_pred EEEcccccccc-----ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 284 VHCAQCGIIWD-----KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 284 Vvs~~~l~~~~-----~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
|++.. ..... -....+++.+++.|+|||.++....
T Consensus 230 IIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 230 IIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99873 12111 0113589999999999999988753
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.8e-07 Score=87.49 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEe
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~ 268 (460)
......+.+.+...++ .+|||||||+|..++-|++.. .+|+.+|..++..+.|+++ |. ++.+..
T Consensus 58 P~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 58 PHMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred cHHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 3456677778877776 899999999999999999875 3889999999999999775 44 355555
Q ss_pred eccc-CCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 269 FISR-QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 269 ~d~~-~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+|.. .++ +...||.|+.+...-..+ + .+.+.|||||++++-.-
T Consensus 127 gDG~~G~~-~~aPyD~I~Vtaaa~~vP---~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWP-EEAPYDRIIVTAAAPEVP---E----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCC-CCCCcCEEEEeeccCCCC---H----HHHHhcccCCEEEEEEc
Confidence 5443 333 347899999986444432 2 35668999999998765
No 133
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.65 E-value=6.3e-07 Score=86.32 Aligned_cols=132 Identities=19% Similarity=0.112 Sum_probs=85.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH-cCC----------------CeEEEeecccCCCCCC-C
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGL----------------PAMIGNFISRQLPYPS-L 279 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~-rgl----------------~~~~~~~d~~~Lp~~~-~ 279 (460)
.+||..|||.|.-+..|+++| .+|+|+|+|+..++.+.+ ++. .+.+..+|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 699999999999999999997 689999999999998843 332 2344556666655322 4
Q ss_pred CccEEEEcccccccccc-HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 280 SFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 280 sFDlVvs~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
+||+|.=..+++-++++ ..+..+.+.++|||||.+++...........-++... .-+++..+.. .+|++....
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v-~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSV-TEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----HHHHHHHHT-TTEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCC-CHHHHHHHhc-CCcEEEEEe
Confidence 79999987767766544 4578999999999999944333221111111111222 2355666665 667665543
No 134
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.65 E-value=7.4e-07 Score=87.63 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=69.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc--CCCeEEEeecccC-CCC-CCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLPAMIGNFISRQ-LPY-PSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r--gl~~~~~~~d~~~-Lp~-~~~sFDlVvs~~~l~~~ 293 (460)
.+|||+|||+|.++..+++... ..+++++|+|+.+++.|+++ .....+...|..+ ++. ..++||+|+++--....
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 5899999999999999987632 25789999999999988765 1113444444433 221 13579999987311110
Q ss_pred ------c---------------cc----HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 294 ------D---------------KK----EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ------~---------------~d----~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. .+ ...++..+.++|||||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 12567778899999999998865
No 135
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.64 E-value=1e-07 Score=90.80 Aligned_cols=139 Identities=16% Similarity=0.124 Sum_probs=91.3
Q ss_pred CCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC-----CCeEEEeecccCCCCCCCCccEEEEcccc
Q 012624 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-----LPAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 216 ~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg-----l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l 290 (460)
...++||.|+|.|..+..++-... -.|..+|+.+..++.|++.- -...+.....+++.-+.++||+|.+.+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 347999999999999998876543 57888999999999998541 11234444466665456799999999999
Q ss_pred cccc-ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchh---hhHHHHHHHHHHHHhCeEEEeeecc
Q 012624 291 IIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRK---NKSLLKVMEEFTEKICWSLIAQQDE 356 (460)
Q Consensus 291 ~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e---~~~~w~~i~~l~~~~~w~~~~~~~~ 356 (460)
.|.+ +|.-.+|+++...|+|||.+++-+..........+++ -...-+.+..+.++.+++++.+...
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 9997 3455799999999999999999887654321111111 1223456777888899988876543
No 136
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.60 E-value=3.1e-07 Score=86.99 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCCch----HHHHHHhc----cCceeEEEEeeCCHHHHHHHHHc--------CC-----------------
Q 012624 216 GVQSVLDVGCGFGS----FGAHLVSL----KLMAVCVAVYEATGSQVQLALER--------GL----------------- 262 (460)
Q Consensus 216 ~~~~VLDIGCGtG~----~a~~La~~----~~~~~~v~giD~s~~~l~~A~~r--------gl----------------- 262 (460)
..-+|+..||++|. ++..+.+. .....++.|+|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999994 45555551 12247999999999999999653 11
Q ss_pred --------CeEEEeecccCCCCCCCCccEEEEccccccccccH-HHHHHHHHHhcCCCcEEEEEeC
Q 012624 263 --------PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 263 --------~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.+.+...|..+.+.+.+.||+|+|.++++.+.++. .++++.+++.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 23444444444333467899999999999886433 4699999999999999999754
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.60 E-value=5.4e-07 Score=97.10 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=79.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--.+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 589999999999999998763 236899999999999998865 33 34455554322 23456899999952111
Q ss_pred c-------------cc--------cc----HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHh
Q 012624 292 I-------------WD--------KK----EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKI 346 (460)
Q Consensus 292 ~-------------~~--------~d----~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~ 346 (460)
. +. .+ ...++.++.++|+|||.+++... . .+-+.+..+.++.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-~------------~q~~~v~~~~~~~ 284 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-F------------KQEEAVTQIFLDH 284 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-C------------chHHHHHHHHHhc
Confidence 0 00 01 12367788899999999988643 1 1123455555666
Q ss_pred CeEEE
Q 012624 347 CWSLI 351 (460)
Q Consensus 347 ~w~~~ 351 (460)
+|..+
T Consensus 285 g~~~~ 289 (506)
T PRK01544 285 GYNIE 289 (506)
T ss_pred CCCce
Confidence 77643
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.58 E-value=3.3e-07 Score=88.80 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=69.4
Q ss_pred CeEEEeCCCCchHHHHHHhccC--ceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccc--
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKL--MAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW-- 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~--~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~-- 293 (460)
.+|||+|||+|.++..++++.. ....++++|+++.+++.|++....+.+...|....++ +++||+|+++=-....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 6899999999999999887521 1358999999999999998775556677777766554 5689999997322211
Q ss_pred cc--------c-HHHHHHHHHHhcCCCcE
Q 012624 294 DK--------K-EGIFLIEADRLLKPGGY 313 (460)
Q Consensus 294 ~~--------d-~~~~L~ei~RvLkPGG~ 313 (460)
.+ . ...++..+.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 01 1 23478888887777775
No 139
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.58 E-value=9.9e-07 Score=82.18 Aligned_cols=107 Identities=20% Similarity=0.148 Sum_probs=78.4
Q ss_pred HHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeeccc
Q 012624 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISR 272 (460)
Q Consensus 198 ~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~ 272 (460)
......+...++ .+++|||||+|+.+..++..+ ...+++++|-+++.++..+++ ++ ++.+..+++.
T Consensus 24 al~ls~L~~~~g--------~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap 94 (187)
T COG2242 24 ALTLSKLRPRPG--------DRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP 94 (187)
T ss_pred HHHHHhhCCCCC--------CEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch
Confidence 344556666655 799999999999999999544 447999999999988876544 33 3445555443
Q ss_pred C-CCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 273 Q-LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 273 ~-Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. |+ ...+||.|+.... ...+.+|+.+...|||||++++...
T Consensus 95 ~~L~-~~~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 95 EALP-DLPSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred Hhhc-CCCCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 3 22 1227999998864 3445689999999999999998865
No 140
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.58 E-value=2e-07 Score=92.79 Aligned_cols=103 Identities=25% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----------CCCeEEEeecc------cCCCCCCC
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----------GLPAMIGNFIS------RQLPYPSL 279 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----------gl~~~~~~~d~------~~Lp~~~~ 279 (460)
...++|+|||-|.-+...-+.|+ ..++|+|+++..++.|++| -.++.+..+|. ..+++.+.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 36799999999988777777766 5789999999999999877 11345555543 23455566
Q ss_pred CccEEEEccccccccc---cHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 280 SFDMVHCAQCGIIWDK---KEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 280 sFDlVvs~~~l~~~~~---d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+||+|-|.+++|.-.. ....+|+.+.+.|||||+|+-+.|..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 6999999987554333 33468999999999999999998854
No 141
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.57 E-value=9.6e-07 Score=83.64 Aligned_cols=100 Identities=29% Similarity=0.393 Sum_probs=72.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccC-CC--CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ-LP--YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~-Lp--~~~~sFDlVvs~~~ 289 (460)
..+||||||.|.+...++...+ ...++|+|++...+..+.++ ++ ++.+...|+.. +. ++++++|.|+..+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F- 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF- 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-
Confidence 4799999999999999999865 47999999999988766544 44 45566666555 22 5679999999986
Q ss_pred ccccccc--------HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKK--------EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d--------~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
--.|+.. ...++.++.++|+|||.+.+.+-
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 3556421 13589999999999999999875
No 142
>PRK03612 spermidine synthase; Provisional
Probab=98.54 E-value=1.3e-06 Score=94.51 Aligned_cols=122 Identities=17% Similarity=0.067 Sum_probs=83.0
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------------CCCeEEEeecccC-CCCCCCCccE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------------GLPAMIGNFISRQ-LPYPSLSFDM 283 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------------gl~~~~~~~d~~~-Lp~~~~sFDl 283 (460)
.++|||||||+|..+..+++.. ...+++.+|+++++++.+++. ..++.+...|..+ +...+++||+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4789999999999999998763 236899999999999999872 1234555555443 2223578999
Q ss_pred EEEcccccccccc-----HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCe
Q 012624 284 VHCAQCGIIWDKK-----EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (460)
Q Consensus 284 Vvs~~~l~~~~~d-----~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 348 (460)
|++.. ..+..+. ...+++++.+.|||||.+++....... .......+....++.+|
T Consensus 377 Ii~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~--------~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 377 IIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF--------APKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc--------chHHHHHHHHHHHHcCC
Confidence 99974 2222111 135889999999999999987643211 12233344555556666
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.50 E-value=6.6e-07 Score=88.81 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEeecccC-CCCCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---------l~~~~~~~d~~~-Lp~~~~sFDlVvs 286 (460)
+++|||||||+|.++..+++.. ...+++++|+++++++.|++.- .++.+...|... +...+++||+|++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4699999999999999988764 2357999999999999987641 123333333322 1122578999998
Q ss_pred cccccccccc----HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 287 AQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 287 ~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. ..+.... ...+++.+.+.|+|||.+++...
T Consensus 152 D~-~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DS-TDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eC-CCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 64 2222211 34688999999999999998743
No 144
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.50 E-value=4.3e-07 Score=87.91 Aligned_cols=100 Identities=27% Similarity=0.262 Sum_probs=79.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH----HcCC-CeEEEeecccCCC---CCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGL-PAMIGNFISRQLP---YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~----~rgl-~~~~~~~d~~~Lp---~~~~sFDlVvs~~~ 289 (460)
..+||||||.|.+...+|++++. ..++|+|+....+..|. +.++ ++.+...|+..+- +++++.|-|...+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 47999999999999999999765 68999999988776554 4488 7777776665432 4566999999987
Q ss_pred cccccccH--------HHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKE--------GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
--.|+... ..+++++.++|||||.|.+.+-
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 46775322 2589999999999999999875
No 145
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.49 E-value=1.1e-06 Score=88.05 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=71.7
Q ss_pred CeEEEeCCCCch----HHHHHHhcc---CceeEEEEeeCCHHHHHHHHHc--------CC--------------------
Q 012624 218 QSVLDVGCGFGS----FGAHLVSLK---LMAVCVAVYEATGSQVQLALER--------GL-------------------- 262 (460)
Q Consensus 218 ~~VLDIGCGtG~----~a~~La~~~---~~~~~v~giD~s~~~l~~A~~r--------gl-------------------- 262 (460)
-+|+..||+||. ++..+.+.. ....+|.|+|+|+.+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999994 444444431 1146899999999999998653 11
Q ss_pred --------CeEEEeecccCCCCC-CCCccEEEEccccccccc-cHHHHHHHHHHhcCCCcEEEEEe
Q 012624 263 --------PAMIGNFISRQLPYP-SLSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 263 --------~~~~~~~d~~~Lp~~-~~sFDlVvs~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
.+.+...|....+++ .+.||+|+|.++++++.+ ...++++++++.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 012333344443333 578999999998888853 34579999999999999887754
No 146
>PLN02366 spermidine synthase
Probab=98.49 E-value=1.1e-06 Score=88.93 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=72.9
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEeecccCC--CCCCCCccEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQL--PYPSLSFDMVH 285 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---------l~~~~~~~d~~~L--p~~~~sFDlVv 285 (460)
+++||+||||.|..+..+++. ....+++.+|+++.+++.|++.- .++.+...|.... ..+++.||+|+
T Consensus 92 pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 479999999999999999886 33468899999999999998751 2355555554221 12357899999
Q ss_pred Ecccccccccc----HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 286 CAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 286 s~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+-. ..++... ...+++.+.+.|+|||.++....
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 853 2332221 23589999999999999977543
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.48 E-value=1.2e-06 Score=85.25 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=71.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCC-C-----CCCCCccEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL-P-----YPSLSFDMVH 285 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~L-p-----~~~~sFDlVv 285 (460)
++|||||||+|.-+..++..-.....++++|.++++++.|++. ++ .+.+..+|+.+. + .++++||+|+
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~Vf 149 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAF 149 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEE
Confidence 7899999999998888876533346899999999999988765 43 345555554332 1 1246899998
Q ss_pred EccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 286 s~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.-. ..+....++.++.++|||||.+++...
T Consensus 150 iDa----~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 150 VDA----DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred ECC----CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 752 112334688999999999999887553
No 148
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.46 E-value=1.2e-06 Score=79.79 Aligned_cols=119 Identities=18% Similarity=0.056 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ 273 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~ 273 (460)
.-..+.++..+....+ .-|||+|.|||-++..++++++...+++.+|.|++.+....++...+.+..+|+..
T Consensus 34 s~lA~~M~s~I~pesg--------lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVIDPESG--------LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhccCcccC--------CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhh
Confidence 4456667777766655 68999999999999999999998899999999999999888886666677676665
Q ss_pred CC-----CCCCCccEEEEccccccccccH-HHHHHHHHHhcCCCcEEEEEeCC
Q 012624 274 LP-----YPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 274 Lp-----~~~~sFDlVvs~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+. +.+..||.|+|.--+..++.+. -++++++...|++||.++-..-.
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 54 5678899999987667765333 36899999999999999876654
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.44 E-value=2.1e-06 Score=91.12 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=76.5
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEee
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~ 269 (460)
..++.+.+.+....+ .+|||+|||+|.++..+++.+ ..++|+|+|+.|++.|+++ ++ ++.+..+
T Consensus 284 ~l~~~vl~~l~~~~~--------~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~ 352 (443)
T PRK13168 284 KMVARALEWLDPQPG--------DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHA 352 (443)
T ss_pred HHHHHHHHHhcCCCC--------CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Confidence 344555555544333 689999999999999999875 5899999999999998765 33 3556666
Q ss_pred cccC----CCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 270 ISRQ----LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 270 d~~~----Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
|..+ +++.+++||+|++.---. .....+..+.+ ++|++.++++..+
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~dPPr~----g~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLLDPPRA----GAAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEECcCCc----ChHHHHHHHHh-cCCCeEEEEEeCh
Confidence 6543 335567899999853111 12235555555 6999999998753
No 150
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.39 E-value=4.3e-06 Score=81.94 Aligned_cols=111 Identities=23% Similarity=0.213 Sum_probs=79.6
Q ss_pred HHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeec
Q 012624 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFI 270 (460)
Q Consensus 197 ~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d 270 (460)
+..|...+...++ .+|||.|.|+|+++..|+..-.....|...|.+++..+.|++. ++ .+.+...|
T Consensus 29 ~~~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D 100 (247)
T PF08704_consen 29 ISYILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD 100 (247)
T ss_dssp HHHHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-
T ss_pred HHHHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc
Confidence 3456667777777 8999999999999999998633446899999999999999876 44 35666666
Q ss_pred ccCCCCC---CCCccEEEEccccccccccHHHHHHHHHHhc-CCCcEEEEEeCCC
Q 012624 271 SRQLPYP---SLSFDMVHCAQCGIIWDKKEGIFLIEADRLL-KPGGYFVLTSPES 321 (460)
Q Consensus 271 ~~~Lp~~---~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvL-kPGG~lvl~~~~~ 321 (460)
...-.|. ++.||.|+.-. +++-.++..+.++| ||||++....|..
T Consensus 101 v~~~g~~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 101 VCEEGFDEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp GGCG--STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred eecccccccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 6443332 36799998753 44445899999999 9999999999854
No 151
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=5e-06 Score=83.09 Aligned_cols=113 Identities=22% Similarity=0.192 Sum_probs=75.5
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
+|||+|||+|..+..++.+... ..|+++|+|+..++.|+++ ++ ++.+...|. +.--.++||+|+|+=--+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDL--FEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccCCceeEEEeCCCCCCC
Confidence 7999999999999999998643 6899999999999998765 43 222222221 11113489999997211111
Q ss_pred -----c---------------c----cHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhC
Q 012624 294 -----D---------------K----KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC 347 (460)
Q Consensus 294 -----~---------------~----d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~ 347 (460)
. . -...++.++.+.|+|||.+++..... +-+.+.++..+.+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-------------q~~~v~~~~~~~~ 254 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-------------QGEAVKALFEDTG 254 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-------------cHHHHHHHHHhcC
Confidence 0 0 11246888999999999988876522 1234566666666
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.36 E-value=3.4e-06 Score=85.63 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=68.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCCC-CCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPY-PSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp~-~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.++..+++.+ ..++|+|.++.+++.|+++ ++ ++.+..+|..++.. ..+.||+|++.--
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP-- 249 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP-- 249 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC--
Confidence 789999999999999999875 5899999999999988755 44 36677777665432 3457999998631
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
. ......+.++..-++|++.++++..+.
T Consensus 250 -r-~G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 250 -R-RGIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred -C-CCccHHHHHHHHHcCCCeEEEEECCcc
Confidence 1 111122333444478888888876543
No 153
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.35 E-value=6e-06 Score=69.64 Aligned_cols=101 Identities=29% Similarity=0.312 Sum_probs=71.8
Q ss_pred EEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCC--C---eEEEeecccC--CCCCC-CCccEEEEccccc
Q 012624 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--P---AMIGNFISRQ--LPYPS-LSFDMVHCAQCGI 291 (460)
Q Consensus 220 VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl--~---~~~~~~d~~~--Lp~~~-~sFDlVvs~~~l~ 291 (460)
++|+|||+|... .+.........++++|.++.++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333332211467889999999988654431 1 2444444444 77777 489999 665566
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
++.. ....+.++.++|+|+|.+++.......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 6544 677999999999999999999886543
No 154
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.32 E-value=1.8e-06 Score=96.66 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=73.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC---CeEEEeecccCC-CCCCCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIGNFISRQL-PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl---~~~~~~~d~~~L-p~~~~sFDlVvs~~~ 289 (460)
++|||+|||+|.++..++..|. .+|+++|+|+.+++.|+++ ++ .+.+...|..+. .-..++||+|++.--
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 6899999999999999998764 4699999999999998875 33 355666665332 111468999998521
Q ss_pred cc----------cccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GI----------IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~----------~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.+ ....+...++..+.++|+|||.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 11 1112334578889999999999988764
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=2.9e-06 Score=81.64 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=68.9
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCC---------C--------eEEEe---------ec
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---------P--------AMIGN---------FI 270 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl---------~--------~~~~~---------~d 270 (460)
...+|||||..|.++..+++.. ....+.|+|+++..++.|++..- . +.+.. .+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred cceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4679999999999999999873 23579999999999999987510 0 00000 00
Q ss_pred ccC-------------------CCCCCCCccEEEEcc----cccccccc-HHHHHHHHHHhcCCCcEEEEEe
Q 012624 271 SRQ-------------------LPYPSLSFDMVHCAQ----CGIIWDKK-EGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 271 ~~~-------------------Lp~~~~sFDlVvs~~----~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
..+ +.+....||+|.|.. +-++|.++ ...+|+.+.++|.|||+|++.-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 001 112346799999853 22233332 3479999999999999988763
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.30 E-value=2.6e-06 Score=84.71 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC--CCeEEEeecc
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFIS 271 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg--l~~~~~~~d~ 271 (460)
....+.+.+.+....+ .+|||||||+|.++..+++++ .+++++|+++.|++.++++. ..+.+..+|.
T Consensus 28 ~~i~~~i~~~l~~~~~--------~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~ 96 (272)
T PRK00274 28 ENILDKIVDAAGPQPG--------DNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDA 96 (272)
T ss_pred HHHHHHHHHhcCCCCc--------CeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChh
Confidence 3456667776665444 789999999999999999986 37899999999999997753 3567777888
Q ss_pred cCCCCCCCCccEEEEcc
Q 012624 272 RQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 272 ~~Lp~~~~sFDlVvs~~ 288 (460)
..+++++-.+|.|+++-
T Consensus 97 ~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 97 LKVDLSELQPLKVVANL 113 (272)
T ss_pred hcCCHHHcCcceEEEeC
Confidence 88776543358888873
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.29 E-value=1.1e-05 Score=78.17 Aligned_cols=123 Identities=19% Similarity=0.098 Sum_probs=75.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeE-EEeecccCCC-----CCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAM-IGNFISRQLP-----YPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~-~~~~d~~~Lp-----~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.|+..+++.|. ..++++|+++.|+.........+. +...+...+. ..-..+|+++++..
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~-- 152 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI-- 152 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH--
Confidence 6899999999999999999864 589999999998887544444432 2222333222 11235776666542
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCC--------CC-CchhhhHHHHHHHHHHHHhCeEEEe
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRG--------SS-SSRKNKSLLKVMEEFTEKICWSLIA 352 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~--------~~-~~~e~~~~w~~i~~l~~~~~w~~~~ 352 (460)
..+..+.+.|+| |.+++.--+.-.-+ -. ....+......+.....+.+|+...
T Consensus 153 -------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 153 -------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred -------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 147789999999 77665543221111 01 1123344445556666667776643
No 158
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.29 E-value=1.2e-05 Score=84.22 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=70.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC---CeEEEeecccCCC----CCCCCccEEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIGNFISRQLP----YPSLSFDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl---~~~~~~~d~~~Lp----~~~~sFDlVvs 286 (460)
.+|||+|||+|.++...+..+. .+++++|+|+.+++.|+++ ++ .+.+..+|....- -..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999987666542 5899999999999988765 44 3556666654431 12468999998
Q ss_pred cccccccc--------ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 287 AQCGIIWD--------KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 287 ~~~l~~~~--------~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.--.+.-. .+...++....++|+|||.++....
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 73211110 1223455667899999999998764
No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.27 E-value=1.6e-05 Score=75.51 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=67.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccC-CCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ-LPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~-Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.++..++.++. ..++++|.++..++.+++. ++ ++.+...|... ++...++||+|++.=- +
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP-y 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP-F 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-C
Confidence 6899999999999987666653 5899999999999887654 33 35555555443 2223457999998732 1
Q ss_pred cccccHHHHHHHHHH--hcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADR--LLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~R--vLkPGG~lvl~~~~ 320 (460)
.. .-...++..+.. +|+|+|.+++....
T Consensus 132 ~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 112335555544 47999988887653
No 160
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.26 E-value=5.1e-06 Score=81.92 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeec
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d 270 (460)
....+.+.+.+....+ .+|||||||+|.++..+++++ ..++++|+++.+++.++++- .++.+..+|
T Consensus 15 ~~~~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D 83 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--------DPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHHhcCCCCc--------CeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEec
Confidence 4566677776665444 789999999999999999984 47999999999999988752 246677778
Q ss_pred ccCCCCCCCCccEEEEcc
Q 012624 271 SRQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 271 ~~~Lp~~~~sFDlVvs~~ 288 (460)
...++++ .||.|+++.
T Consensus 84 ~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 84 ALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cccCCch--hceEEEEcC
Confidence 8777764 489999985
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.26 E-value=4.7e-06 Score=79.86 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----C---CCeEE
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G---LPAMI 266 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----g---l~~~~ 266 (460)
+.+.+.+++.-..+.. ...+|||...|-|.++...+++|. ..|+.++.++..++.|.-+ + ..+.+
T Consensus 118 dP~~Dt~~Kv~~V~~~------~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 118 DPLEDTLAKVELVKVK------RGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcHHHHHhhhheeccc------cCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 4455555554433221 227999999999999999999985 4788889999888887543 1 12344
Q ss_pred EeecccCC--CCCCCCccEEEEcccccccc--ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHH
Q 012624 267 GNFISRQL--PYPSLSFDMVHCAQCGIIWD--KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEF 342 (460)
Q Consensus 267 ~~~d~~~L--p~~~~sFDlVvs~~~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l 342 (460)
..+|+.+. .|+|.+||+|+-----+... -.-..+.+|++|+|||||.++.....+..+.. .......+...
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr-----G~d~~~gVa~R 264 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR-----GLDLPKGVAER 264 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc-----cCChhHHHHHH
Confidence 44454433 37899999998531111111 12346899999999999999998766554321 12334556677
Q ss_pred HHHhCeEEEee
Q 012624 343 TEKICWSLIAQ 353 (460)
Q Consensus 343 ~~~~~w~~~~~ 353 (460)
.++.+|.++..
T Consensus 265 Lr~vGF~~v~~ 275 (287)
T COG2521 265 LRRVGFEVVKK 275 (287)
T ss_pred HHhcCceeeee
Confidence 78899987654
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.24 E-value=1.3e-05 Score=74.43 Aligned_cols=102 Identities=21% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---C-----CCeEEEeecccC-C---CCCCCCccEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G-----LPAMIGNFISRQ-L---PYPSLSFDMV 284 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---g-----l~~~~~~~d~~~-L---p~~~~sFDlV 284 (460)
..+|||+|||+|..+..++... ...+|+..|.++ .++..+.+ + ..+.+..++=.+ . ....+.||+|
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 3799999999999999998872 236888999988 66655433 2 122333222101 0 0234689999
Q ss_pred EEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 285 vs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+++.+++.- ...+.+++-+.++|+|+|.++++.+..
T Consensus 124 lasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999976654 566779999999999999988877643
No 163
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.22 E-value=2.5e-05 Score=77.41 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=93.6
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHH---HHHHc----C--------------------C-C-----
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ---LALER----G--------------------L-P----- 263 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~---~A~~r----g--------------------l-~----- 263 (460)
..+||-=|||.|.++-.++.+| ..+.|.|.|--|+- +.... + + +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4689999999999999999997 57899999998853 22221 0 0 0
Q ss_pred ------------eEEEeecccCCCCCC---CCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCC-
Q 012624 264 ------------AMIGNFISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS- 327 (460)
Q Consensus 264 ------------~~~~~~d~~~Lp~~~---~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~- 327 (460)
+....+|...+..++ ++||+|++.+ ++.-..+.-.+++.|+++|||||+++-..|-..+....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 011111222221223 6999999886 44444666789999999999999999888876554321
Q ss_pred --CchhhhHHHHHHHHHHHHhCeEEEeeec
Q 012624 328 --SSRKNKSLLKVMEEFTEKICWSLIAQQD 355 (460)
Q Consensus 328 --~~~e~~~~w~~i~~l~~~~~w~~~~~~~ 355 (460)
.+....-.|+++..+.++++|+.+.+..
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1112345689999999999999987654
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.20 E-value=1e-05 Score=77.28 Aligned_cols=99 Identities=21% Similarity=0.191 Sum_probs=73.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccC-CC-----CCCCCccEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LP-----YPSLSFDMVH 285 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~-Lp-----~~~~sFDlVv 285 (460)
++|||||+++|..+..+++.-.....++.+|.+++..+.|++. |+ .+.+..+++.+ ++ .+.++||+|+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF 126 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVF 126 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEE
Confidence 7899999999999999998644457899999999999988654 43 45565555432 11 1246899999
Q ss_pred EccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 286 s~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.-. ...+...++..+.++|+|||.+++-...
T Consensus 127 iDa----~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 127 IDA----DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EES----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred Ecc----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 753 2234456888899999999999887654
No 165
>PRK04148 hypothetical protein; Provisional
Probab=98.19 E-value=1.4e-05 Score=71.11 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=65.7
Q ss_pred CeEEEeCCCCch-HHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGtG~-~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.++||||||+|. ++..|++.| ..|+++|+++..++.+++.+..+...+....++.. -+.+|+|.+.+. +++
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~-y~~a~liysirp----p~e 89 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI-YKNAKLIYSIRP----PRD 89 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH-HhcCCEEEEeCC----CHH
Confidence 789999999996 888998877 58999999999999999988877777653333322 256999998763 234
Q ss_pred HHHHHHHHHHhcCCCcEEEEEe
Q 012624 297 EGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
....+.++.+-+. .-+++..
T Consensus 90 l~~~~~~la~~~~--~~~~i~~ 109 (134)
T PRK04148 90 LQPFILELAKKIN--VPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHcC--CCEEEEc
Confidence 4445666666543 4455543
No 166
>PLN02476 O-methyltransferase
Probab=98.18 E-value=1.4e-05 Score=79.49 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccC-CC-C----CCCCccEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LP-Y----PSLSFDMV 284 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~-Lp-~----~~~sFDlV 284 (460)
.++|||||+|+|..+..++..-.....++++|.+++..+.|++. |+ .+.+..+++.+ |+ + .+++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 37999999999999999987522235799999999999988765 44 35555554422 22 1 24689999
Q ss_pred EEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 285 vs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.-. ...+...++..+.++|+|||.+++-..
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9753 223345688999999999999887644
No 167
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.17 E-value=1.5e-05 Score=84.33 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=67.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccC----CCCCCCCccEEEEcc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ----LPYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~----Lp~~~~sFDlVvs~~ 288 (460)
.+|||+|||+|.++..+++.. ..++++|+++.+++.|+++ ++ ++.+..+|..+ +++.+++||+|++.-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 689999999999999999864 4799999999999988764 33 35566666543 224456899999753
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 289 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.-... ...+++.+.+ ++|++.++++..
T Consensus 371 Pr~G~---~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 PRKGC---AAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CCCCC---CHHHHHHHHh-cCCCEEEEEcCC
Confidence 21111 2346666554 899998877643
No 168
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.17 E-value=1.2e-05 Score=79.73 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=73.6
Q ss_pred CCeEEEeCCCCc----hHHHHHHhccC----ceeEEEEeeCCHHHHHHHHHc---------CCC----------------
Q 012624 217 VQSVLDVGCGFG----SFGAHLVSLKL----MAVCVAVYEATGSQVQLALER---------GLP---------------- 263 (460)
Q Consensus 217 ~~~VLDIGCGtG----~~a~~La~~~~----~~~~v~giD~s~~~l~~A~~r---------gl~---------------- 263 (460)
.-+|+-.||+|| +++..|.+... ...++.|+|++...++.|+.- +++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 468999999999 45566655543 258999999999999988642 111
Q ss_pred ---------eEEEeecccCCCCCCCCccEEEEccccccccccH-HHHHHHHHHhcCCCcEEEEEeC
Q 012624 264 ---------AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 264 ---------~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.+...|...-++..+.||+|+|.++++.+.... .+++..++..|+|||+|++-..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 1122222222222456799999999999886433 3699999999999999998654
No 169
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.17 E-value=6.1e-06 Score=83.44 Aligned_cols=95 Identities=24% Similarity=0.306 Sum_probs=67.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH----cCCC--eEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~----rgl~--~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
++|||||||+|.++..-++.|. ..|+++|.|.-. +.|.+ ++.. +.+..+.++++.+|....|+|++-+...
T Consensus 62 K~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 7899999999999999999985 789999988754 55543 3443 3445555666555678999999965322
Q ss_pred ccc--ccHHHHHHHHHHhcCCCcEEE
Q 012624 292 IWD--KKEGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 292 ~~~--~d~~~~L~ei~RvLkPGG~lv 315 (460)
... .-.+.+|-.=.+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 221 223345666678999999876
No 170
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-05 Score=76.03 Aligned_cols=95 Identities=22% Similarity=0.182 Sum_probs=69.3
Q ss_pred CeEEEeCCCCchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHc---C------------CCeEEEeecccCCCCCCCCc
Q 012624 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER---G------------LPAMIGNFISRQLPYPSLSF 281 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~r---g------------l~~~~~~~d~~~Lp~~~~sF 281 (460)
.+.||+|.|+|.++..++.. +......+|+|..++.++.++++ - ....+..+|....--+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 68999999999999888754 33334458999999999988665 1 12345566666666667899
Q ss_pred cEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 282 DMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 282 DlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
|.||+... .....+++...|+|||.+++-.-
T Consensus 164 DaIhvGAa-------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 164 DAIHVGAA-------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ceEEEccC-------ccccHHHHHHhhccCCeEEEeec
Confidence 99998731 12355677788999999988654
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.14 E-value=2.3e-05 Score=77.02 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeec
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d 270 (460)
....+.+.+.+....+ .+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+...|
T Consensus 15 ~~i~~~i~~~~~~~~~--------~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D 83 (253)
T TIGR00755 15 ESVIQKIVEAANVLEG--------DVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGD 83 (253)
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECc
Confidence 3456667666655444 789999999999999999986 35999999999999987652 356677778
Q ss_pred ccCCCCCCCCcc---EEEEcc
Q 012624 271 SRQLPYPSLSFD---MVHCAQ 288 (460)
Q Consensus 271 ~~~Lp~~~~sFD---lVvs~~ 288 (460)
...++++ .|| +|+++.
T Consensus 84 ~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 84 ALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred hhcCChh--HcCCcceEEEcC
Confidence 8777764 466 777663
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=76.70 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCe--EEEe-ecccC-CC-CCCCCccEEEEc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA--MIGN-FISRQ-LP-YPSLSFDMVHCA 287 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~--~~~~-~d~~~-Lp-~~~~sFDlVvs~ 287 (460)
.++|||||.+.|..+..|+..-....+++.+|.++++.+.|++. |+.- .... +|..+ +. ...++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 37899999999999999998744346899999999999999876 4433 2222 23221 12 456899999964
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 288 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+...+-..++..+.++|||||.+++-.-.
T Consensus 140 ----adK~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 140 ----ADKADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred ----CChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 23334456999999999999999886543
No 173
>PLN02672 methionine S-methyltransferase
Probab=98.08 E-value=4.2e-05 Score=88.32 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=69.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-----------------CeEEEeecccCCCC
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-----------------PAMIGNFISRQLPY 276 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-----------------~~~~~~~d~~~Lp~ 276 (460)
.+|||+|||+|..+..++++... ..++++|+|+.+++.|+++ ++ ++.+...|.... +
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 58999999999999999987532 5899999999999988654 11 355565554432 2
Q ss_pred CC--CCccEEEEccccc--------------c-----------cc--------cc----HHHHHHHHHHhcCCCcEEEEE
Q 012624 277 PS--LSFDMVHCAQCGI--------------I-----------WD--------KK----EGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 277 ~~--~sFDlVvs~~~l~--------------~-----------~~--------~d----~~~~L~ei~RvLkPGG~lvl~ 317 (460)
.+ ..||+|+++=--+ + .. +| ..+++.+..++|||||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999962111 0 00 01 035678888999999998876
Q ss_pred eC
Q 012624 318 SP 319 (460)
Q Consensus 318 ~~ 319 (460)
..
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 54
No 174
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.06 E-value=2.7e-05 Score=80.99 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=67.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCC-CCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP-YPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp-~~~~sFDlVvs~~~l~ 291 (460)
.+|||+|||+|.++..++..+ ..++++|+++.+++.|+++ ++ ++.+...|..+.. ...++||+|++.=---
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 689999999999999999765 5799999999999988765 33 4566666654432 1124699999863211
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. -...+++.+. .++|++.++++..
T Consensus 312 G---~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 G---IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred C---CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 1 1223555554 4799998888865
No 175
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=3.1e-05 Score=72.31 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=77.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
++|+|+|||||.++...+-.|. ..|+++|+++++++.++++ +..+.+...|+.+. ++.||.|+++=-+-.+
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~~ 121 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCccc
Confidence 6899999999999998888876 6899999999999998876 33577777776665 4679999887322112
Q ss_pred --cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 294 --DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 294 --~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
..|.. ++....+.- ..+.+-+... .-+.++...+..+..+...
T Consensus 122 ~rhaDr~-Fl~~Ale~s----~vVYsiH~a~------------~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 122 RRHADRP-FLLKALEIS----DVVYSIHKAG------------SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccCCHH-HHHHHHHhh----heEEEeeccc------------cHHHHHHHHHhcCCeEEEE
Confidence 13443 566555554 3455555432 2234566667777655443
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.04 E-value=3.7e-05 Score=78.17 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=84.9
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEee
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~ 269 (460)
.+.+.+.++.....+ ..|||==||||+++....-.| ..++|.|++..|++-|+.+ ++ ...+...
T Consensus 184 ~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 184 RLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred HHHHHHHHHhccccC--------CEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEe
Confidence 455566666555555 789999999999998876555 7899999999999998765 32 2334444
Q ss_pred -cccCCCCCCCCccEEEEcc-----cccccc---ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 270 -ISRQLPYPSLSFDMVHCAQ-----CGIIWD---KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 270 -d~~~Lp~~~~sFDlVvs~~-----~l~~~~---~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
|+..+|+++++||.|++-- .-..-. +-...+|+.+.++||+||++++..+
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8999999999999999831 001110 1124689999999999999999988
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.04 E-value=1.3e-05 Score=86.52 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=77.3
Q ss_pred hccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCC--CCCCCCccEEE
Q 012624 213 LQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQL--PYPSLSFDMVH 285 (460)
Q Consensus 213 ~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~L--p~~~~sFDlVv 285 (460)
.......+||||||.|.++..++...+. ..++|+|++...+..+..+ ++. +.+...+...+ -++++++|.|+
T Consensus 344 f~~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 344 VNEKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 3344578999999999999999998654 7899999999877655433 443 22333333222 26789999999
Q ss_pred EccccccccccH--------HHHHHHHHHhcCCCcEEEEEeC
Q 012624 286 CAQCGIIWDKKE--------GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 286 s~~~l~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
..+ --.|+... ..+++.+.++|||||.+.+.+-
T Consensus 423 i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 423 ILF-PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEC-CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 987 46774321 3589999999999999998875
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.00 E-value=3e-05 Score=82.39 Aligned_cols=97 Identities=25% Similarity=0.242 Sum_probs=65.8
Q ss_pred CCeEEEeCCCCchHHHHHHhcc---CceeEEEEeeCCHHHHHHHH----Hc--CCCeEEEeecccCCCCCCCCccEEEEc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLAL----ER--GLPAMIGNFISRQLPYPSLSFDMVHCA 287 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~---~~~~~v~giD~s~~~l~~A~----~r--gl~~~~~~~d~~~Lp~~~~sFDlVvs~ 287 (460)
...|||||||+|.+....++.+ ....+|+++|-++......+ +. +-.+.+...|.+++..+. .+|+|||=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 3689999999999987766653 13478999999987665443 22 346888888888887654 89999995
Q ss_pred ccccccc--ccHHHHHHHHHHhcCCCcEEE
Q 012624 288 QCGIIWD--KKEGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 288 ~~l~~~~--~d~~~~L~ei~RvLkPGG~lv 315 (460)
.. -.+. +-....|....|.|||||.++
T Consensus 266 lL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 32 1221 223357888999999999876
No 179
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.98 E-value=2.9e-05 Score=78.16 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----C--CCeEEE
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G--LPAMIG 267 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----g--l~~~~~ 267 (460)
....+.+.+.+....+ .+|||||||+|.++..+++.+ ..++++|+++.+++.++++ + .++.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~--------~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPT--------DTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 4466677776665544 789999999999999999875 4789999999999988764 2 246677
Q ss_pred eecccCCCCCCCCccEEEEccccccc
Q 012624 268 NFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 268 ~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
..|....++ ..||.|+++. -+++
T Consensus 91 ~~Dal~~~~--~~~d~VvaNl-PY~I 113 (294)
T PTZ00338 91 EGDALKTEF--PYFDVCVANV-PYQI 113 (294)
T ss_pred ECCHhhhcc--cccCEEEecC-Cccc
Confidence 777766554 3689999874 3444
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.97 E-value=8e-05 Score=75.75 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=62.4
Q ss_pred chhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---C--CC--e
Q 012624 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G--LP--A 264 (460)
Q Consensus 192 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---g--l~--~ 264 (460)
+...|+..+.+.+..............++||||||+|.....++.+.. ..+++|+|+++.+++.|++. + +. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 356788888888754321112222347899999999988877776532 37899999999999998764 2 22 2
Q ss_pred EEE-eecccCC----CCCCCCccEEEEcc
Q 012624 265 MIG-NFISRQL----PYPSLSFDMVHCAQ 288 (460)
Q Consensus 265 ~~~-~~d~~~L----p~~~~sFDlVvs~~ 288 (460)
.+. ..+...+ ..+++.||+|+|+=
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCC
Confidence 232 1111111 12467899999984
No 181
>PLN02823 spermine synthase
Probab=97.94 E-value=5.8e-05 Score=77.30 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEeecccC-CCCCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---------l~~~~~~~d~~~-Lp~~~~sFDlVvs 286 (460)
+++||.||+|.|..+..+++.. ...+++.+|+++++++.|++.- .++.+...|... +...+++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4789999999999999988863 2367999999999999998651 234444444332 2334578999998
Q ss_pred ccccccccc------cHHHHHH-HHHHhcCCCcEEEEEe
Q 012624 287 AQCGIIWDK------KEGIFLI-EADRLLKPGGYFVLTS 318 (460)
Q Consensus 287 ~~~l~~~~~------d~~~~L~-ei~RvLkPGG~lvl~~ 318 (460)
-. .-.+.. ....+++ .+.+.|+|||.+++..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 52 222210 1235787 8999999999988754
No 182
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=6.5e-06 Score=81.11 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=80.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc--
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK-- 295 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~-- 295 (460)
..++|+|||.|-.+.. . ..+.++|.|.+...+.-++..|.. ....+|+..+|+.+.+||.+++..+++|+..
T Consensus 47 sv~~d~gCGngky~~~----~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGV----N-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred ceeeecccCCcccCcC----C-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 6799999999976532 1 235789999999999998777653 3445578899999999999999988888753
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSPESKPR 324 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~~~~~~ 324 (460)
....+++|+.|+|||||...+..+.....
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa~~q~ 149 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWALEQH 149 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehhhcc
Confidence 33469999999999999999888765443
No 183
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.93 E-value=1.3e-05 Score=82.84 Aligned_cols=102 Identities=24% Similarity=0.220 Sum_probs=81.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
..++|+|||.|....++..-. ...++|+|.++.++..+... ++ .-.+...+....|+++++||.+-+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 478999999999998887653 26788999999887766543 11 12234456778899999999999999888
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
|. ++...++.|++|+++|||+++..+....
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 88 6888899999999999999999877543
No 184
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=0.00013 Score=71.54 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEE
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIG 267 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~ 267 (460)
+.+.+.+.+.+..... .....+||+|||+|..+..++..- ....++++|.|++.+..|.++ ++ .+.+.
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4556666655543221 112479999999999999998763 358899999999999988776 22 22222
Q ss_pred eec-----ccCCCCCCCCccEEEEcccccccc------------c-------------cHHHHHHHHHHhcCCCcEEEEE
Q 012624 268 NFI-----SRQLPYPSLSFDMVHCAQCGIIWD------------K-------------KEGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 268 ~~d-----~~~Lp~~~~sFDlVvs~~~l~~~~------------~-------------d~~~~L~ei~RvLkPGG~lvl~ 317 (460)
..+ ....+..++.+|+++|+=--+.-. + ....++.-+.|+|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 221 122335578999999972111110 0 0113466678999999999998
Q ss_pred eCCC
Q 012624 318 SPES 321 (460)
Q Consensus 318 ~~~~ 321 (460)
....
T Consensus 285 ~~~~ 288 (328)
T KOG2904|consen 285 LVER 288 (328)
T ss_pred eccc
Confidence 7644
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.87 E-value=0.00011 Score=68.68 Aligned_cols=100 Identities=27% Similarity=0.253 Sum_probs=67.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCcee--------EEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAV--------CVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDM 283 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~--------~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDl 283 (460)
..|||--||+|++....+..+.... .+.|.|+++.+++.|+++ ++ .+.+.+.|..++++.++++|.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence 7899999999999977765533322 488999999999988766 33 356778888999988899999
Q ss_pred EEEccccccc--c--ccH----HHHHHHHHHhcCCCcEEEEEe
Q 012624 284 VHCAQCGIIW--D--KKE----GIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 284 Vvs~~~l~~~--~--~d~----~~~L~ei~RvLkPGG~lvl~~ 318 (460)
|+++-- +.. . .+. ..+++++.++|++...+++..
T Consensus 110 IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 110 IVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp EEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred EEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 999731 111 1 111 246889999999944444443
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.87 E-value=6.2e-05 Score=73.91 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=69.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccC-CCC------CCCCccEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LPY------PSLSFDMV 284 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~-Lp~------~~~sFDlV 284 (460)
++|||||+++|.-+..++..-.....++.+|.+++..+.|++. |+ .+.+..+++.+ ++- .+++||+|
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i 160 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI 160 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEE
Confidence 7899999999999999987533346899999999999888665 43 34454444322 221 13689999
Q ss_pred EEccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 285 vs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
+.-. .......++..+.++|+|||.+++-.
T Consensus 161 FiDa----dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 161 FVDA----DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EecC----CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 9753 22333457888899999999987754
No 187
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.86 E-value=0.00021 Score=71.26 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=77.0
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---CCCeE---EE-eecccCCCCCCCCccEEEEccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAM---IG-NFISRQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---gl~~~---~~-~~d~~~Lp~~~~sFDlVvs~~~ 289 (460)
+++|||+|+|+|.-+-...+.-....+++.+|.|+.|++.++.- ..... .. ..-....++. ..|+|+++++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~ 111 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYV 111 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehh
Confidence 47999999999986655554422346789999999999987653 11110 00 0101122232 2399999998
Q ss_pred ccccccc-HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 290 GIIWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 290 l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
+....+. ...+++.+.+.+.+ .+++.+++.. ........+++...+.++.+++-
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~--------~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTAP--VLVLVEPGTP--------AGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred hhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh--------HHHHHHHHHHHHHhhCCCceECC
Confidence 8888541 22466666666655 9999999653 22333444455555566666654
No 188
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.80 E-value=0.0004 Score=65.45 Aligned_cols=98 Identities=15% Similarity=0.032 Sum_probs=64.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccC-CC-C-CCC-CccEEEEc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LP-Y-PSL-SFDMVHCA 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~-Lp-~-~~~-sFDlVvs~ 287 (460)
.+|||++||+|.++..++.+|. ..++++|.++..++.+++. +. .+.+...|... +. + ..+ .||+|+.-
T Consensus 51 ~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 6899999999999999999975 4789999999999877654 33 34555555532 21 1 122 36777663
Q ss_pred cccccccccHHHHHHHHH--HhcCCCcEEEEEeC
Q 012624 288 QCGIIWDKKEGIFLIEAD--RLLKPGGYFVLTSP 319 (460)
Q Consensus 288 ~~l~~~~~d~~~~L~ei~--RvLkPGG~lvl~~~ 319 (460)
--+.. .....++..+. .+|++||.+++...
T Consensus 129 -PPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 -PPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred -cCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 11211 22334454443 46888998777654
No 189
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00016 Score=72.21 Aligned_cols=101 Identities=19% Similarity=0.064 Sum_probs=72.3
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEeecccC-CCCCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---------l~~~~~~~d~~~-Lp~~~~sFDlVvs 286 (460)
+++||-||.|.|.+++.+++... ..+++.+|++++.++.+++.- .++.+...|..+ +.-..++||+|++
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 36999999999999999999864 478899999999999998761 122333333222 2222348999998
Q ss_pred ccccccccc----cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 287 AQCGIIWDK----KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 287 ~~~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
-. .-...+ ....+++.++|.|+++|.++....
T Consensus 156 D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 156 DS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred cC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 53 222111 124699999999999999998843
No 190
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.76 E-value=0.00013 Score=73.93 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
....+|+|.|.|..+..+....+ .+.+++.....+-.+++.- +....+++ .++.|- -|+|++-++++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~~gV~~v~gdm-fq~~P~----~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLAPGVEHVAGDM-FQDTPK----GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhcCCcceecccc-cccCCC----cCeEEEEeecccC
Confidence 57899999999999999998532 4778888887776665543 33334444 233553 3599999999999
Q ss_pred cc-cHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 294 DK-KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 294 ~~-d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
.+ |-.++|++++..|+|||.+++.+.....
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 73 4458999999999999999999986554
No 191
>PRK00536 speE spermidine synthase; Provisional
Probab=97.73 E-value=0.00039 Score=68.83 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=69.8
Q ss_pred CCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEeecccCCCCCCCCccEEEE
Q 012624 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQLPYPSLSFDMVHC 286 (460)
Q Consensus 216 ~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---------gl~~~~~~~d~~~Lp~~~~sFDlVvs 286 (460)
.+++||=||.|.|..++.+++.. .+++.+|+++++++.+++- ..++.+... ..+ -..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 45899999999999999999984 3899999999999999873 223333321 111 12468999997
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
-. + ....+++.++|.|+|||.++.....
T Consensus 146 Ds-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 146 LQ-E-----PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred cC-C-----CChHHHHHHHHhcCCCcEEEECCCC
Confidence 63 2 2345889999999999999987653
No 192
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=3e-05 Score=70.45 Aligned_cols=135 Identities=17% Similarity=0.276 Sum_probs=92.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-CCC--eEEE---ee----cccCCCCCCCCccEEEEc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLP--AMIG---NF----ISRQLPYPSLSFDMVHCA 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-gl~--~~~~---~~----d~~~Lp~~~~sFDlVvs~ 287 (460)
++|||+|.|--.++..|.....+..+|...|-+++.++-.++- +.+ ..+. .+ ...+.....++||.|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 6899999997777766666656668888999999888766443 111 0000 00 011122345689999999
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee-ecceeeeeecc
Q 012624 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ-QDETFIWQKTV 364 (460)
Q Consensus 288 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~-~~~~~iw~k~~ 364 (460)
.|++.- +....+++.|.+.|+|.|..++..|... ...+.+.+..+..+|.+... .-+..+|++..
T Consensus 111 DClFfd-E~h~sLvdtIk~lL~p~g~Al~fsPRRg-----------~sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 111 DCLFFD-EHHESLVDTIKSLLRPSGRALLFSPRRG-----------QSLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred cchhHH-HHHHHHHHHHHHHhCcccceeEecCccc-----------chHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 986543 5566789999999999999999888432 23455566777788888665 44567888765
No 193
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.68 E-value=0.00018 Score=72.22 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=66.5
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEcccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l 290 (460)
.+.|||+|||+|.++...+..|. ..|.+++.|+ |.+.|++. ++ ++.+..+.++++.+| +..|++++--..
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc--ceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 37899999999999998888875 5789998764 78888654 22 344555666777665 569999985321
Q ss_pred ccc-cccHHHHHHHHHHhcCCCcEEEEE
Q 012624 291 IIW-DKKEGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 291 ~~~-~~d~~~~L~ei~RvLkPGG~lvl~ 317 (460)
.-. .+..-...--.+|.|||.|..+=+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 111 122223344566999999987643
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.67 E-value=0.00051 Score=73.41 Aligned_cols=103 Identities=23% Similarity=0.285 Sum_probs=72.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCC-CCCCCccEEE----Ec
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVH----CA 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp-~~~~sFDlVv----s~ 287 (460)
.+|||+++|.|.=+.++++.-.....+++.|+++.-++..+++ |+. +.+...|...+. ...+.||.|+ |+
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 7999999999999999888632335789999999887766554 554 345555555442 2346799999 54
Q ss_pred cccccccccH------------------HHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 288 QCGIIWDKKE------------------GIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 288 ~~l~~~~~d~------------------~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
. .-.+..++ ..+|..+.++|||||+++.++-..
T Consensus 195 G-~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 195 G-EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred C-CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 2 11111111 357889999999999999888754
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.67 E-value=0.00024 Score=66.77 Aligned_cols=94 Identities=31% Similarity=0.363 Sum_probs=69.3
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH----HcCCC-eEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLP-AMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~----~rgl~-~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
+++|||+|.|.-+.-|+-..+ ..+++.+|....-+.+.+ +-++. +.+....++. +.....||+|++.-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 799999999998888876643 368999999987666543 33666 6666666666 445789999999853
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.....++.-+...|++||.+++.-.
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3445688888999999999988754
No 196
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.63 E-value=0.00032 Score=68.92 Aligned_cols=88 Identities=23% Similarity=0.132 Sum_probs=64.6
Q ss_pred cccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc--CCC-
Q 012624 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLP- 263 (460)
Q Consensus 187 ~~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r--gl~- 263 (460)
++.+-.....+++|.+..+.++. ..|||||.|||.++..|++.+ ..|+++++++.|+....+| |.+
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~t--------D~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~ 105 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLKPT--------DVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPK 105 (315)
T ss_pred chhhhcCHHHHHHHHhccCCCCC--------CEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCc
Confidence 33333335667777777777665 899999999999999999997 5899999999999988877 333
Q ss_pred ---eEEEeecccCCCCCCCCccEEEEc
Q 012624 264 ---AMIGNFISRQLPYPSLSFDMVHCA 287 (460)
Q Consensus 264 ---~~~~~~d~~~Lp~~~~sFDlVvs~ 287 (460)
..+..+|....++ -.||.++++
T Consensus 106 ~~kLqV~~gD~lK~d~--P~fd~cVsN 130 (315)
T KOG0820|consen 106 SGKLQVLHGDFLKTDL--PRFDGCVSN 130 (315)
T ss_pred cceeeEEecccccCCC--cccceeecc
Confidence 3344445444433 359999985
No 197
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.63 E-value=0.00036 Score=72.80 Aligned_cols=97 Identities=25% Similarity=0.234 Sum_probs=70.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+|||++||+|.++..++.... ...|+++|+++..++.++++ ++. ..+...|...+....+.||+|++.= .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C-
Confidence 5899999999999999987632 24799999999999988754 343 3355555544321146799999852 1
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
..+..++....+.+++||.++++...
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 23345788878889999999999543
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.63 E-value=0.0007 Score=67.31 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=89.5
Q ss_pred CCeEEEeCCCCchHHHHHHhccCc-eeEEEEeeCCHHHHHHHH----HcCCCe--EEEeecccC---CCCCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQLAL----ERGLPA--MIGNFISRQ---LPYPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~-~~~v~giD~s~~~l~~A~----~rgl~~--~~~~~d~~~---Lp~~~~sFDlVvs 286 (460)
+-+||||.||.|............ ..++.-.|.|+..++..+ ++|+.. .+...|+.+ +.--+-..|+++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 468999999999988777766433 357888999999887554 456643 565555433 2212335789998
Q ss_pred ccccccccccH---HHHHHHHHHhcCCCcEEEEEeCCCCCCCCC---Cchhh---------hHHHHHHHHHHHHhCeEEE
Q 012624 287 AQCGIIWDKKE---GIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKN---------KSLLKVMEEFTEKICWSLI 351 (460)
Q Consensus 287 ~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~---~~~e~---------~~~w~~i~~l~~~~~w~~~ 351 (460)
+. ++...+|. ...+..+.+.+.|||+++.+..+..+.... .-..| .....+|..+.+..+|++.
T Consensus 216 sG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 216 SG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred ec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 86 55554553 347899999999999999998543222110 00011 1233667777777777766
Q ss_pred eeecc
Q 012624 352 AQQDE 356 (460)
Q Consensus 352 ~~~~~ 356 (460)
.+..+
T Consensus 295 ~q~ID 299 (311)
T PF12147_consen 295 DQRID 299 (311)
T ss_pred hheec
Confidence 55433
No 199
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.56 E-value=0.00048 Score=65.80 Aligned_cols=120 Identities=19% Similarity=0.219 Sum_probs=78.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC-CCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-YPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp-~~~~sFDlVvs~~~l~~~~~d 296 (460)
-++|||||=+......- .+. ..|+.||.++. ...+.-.|+-...+| -+++.||+|+++.++-.+ ++
T Consensus 53 lrlLEVGals~~N~~s~--~~~--fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV-P~ 119 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGW--FDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV-PD 119 (219)
T ss_pred ceEEeecccCCCCcccc--cCc--eeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC-CC
Confidence 68999998765544332 222 56899999762 122233333122333 246799999999865544 44
Q ss_pred H---HHHHHHHHHhcCCCcE-----EEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeec
Q 012624 297 E---GIFLIEADRLLKPGGY-----FVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQD 355 (460)
Q Consensus 297 ~---~~~L~ei~RvLkPGG~-----lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~ 355 (460)
+ ...++.+++.|+|+|. +++..|..-..+. ..-.-+.+..+.+.+||..+..+.
T Consensus 120 p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS-----Ry~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS-----RYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred HHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc-----cccCHHHHHHHHHhCCcEEEEEEe
Confidence 4 4689999999999999 9999886543322 112224456788899999977643
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00051 Score=67.70 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeec
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d 270 (460)
....+.|.+......+ .+|||||+|.|.++..|++++ ..|+++|+++.+++..+++. .++.+..+|
T Consensus 16 ~~v~~kIv~~a~~~~~--------d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D 84 (259)
T COG0030 16 KNVIDKIVEAANISPG--------DNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGD 84 (259)
T ss_pred HHHHHHHHHhcCCCCC--------CeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCc
Confidence 3457777777766554 799999999999999999997 46899999999999887762 457778888
Q ss_pred ccCCCCCCC-CccEEEEccccccc
Q 012624 271 SRQLPYPSL-SFDMVHCAQCGIIW 293 (460)
Q Consensus 271 ~~~Lp~~~~-sFDlVvs~~~l~~~ 293 (460)
+...++++. .++.|+++- =+++
T Consensus 85 aLk~d~~~l~~~~~vVaNl-PY~I 107 (259)
T COG0030 85 ALKFDFPSLAQPYKVVANL-PYNI 107 (259)
T ss_pred hhcCcchhhcCCCEEEEcC-CCcc
Confidence 888887654 689999884 3444
No 201
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0038 Score=58.09 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH----HcCCCeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~----~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
+..+||||||+|..+..|++.-....-..++|+++...+..+ .++..+.....|...- ...++.|+++.+--...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 467999999999999999987433355678899999877643 3344444443332221 23478888887521111
Q ss_pred --------------cc--cc----HHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 293 --------------WD--KK----EGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 293 --------------~~--~d----~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
|. .+ .++++.++..+|.|.|.+++.....+
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 11 11 23577888889999999999887543
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.44 E-value=0.00028 Score=65.42 Aligned_cols=97 Identities=26% Similarity=0.173 Sum_probs=57.8
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec---------ccC-CCCCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---------SRQ-LPYPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d---------~~~-Lp~~~~sFDlVvs 286 (460)
..+|||+||++|.|+..+.+++.....++|+|+.+.. ....+....+| ... ++-..+.||+|+|
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 4799999999999999999997456899999998751 00111111111 111 1112268999999
Q ss_pred cccccccc----ccH-------HHHHHHHHHhcCCCcEEEEEeCC
Q 012624 287 AQCGIIWD----KKE-------GIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 287 ~~~l~~~~----~d~-------~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
-. ..... .+. ...+.-+...|||||.+++-...
T Consensus 98 D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 98 DM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp --------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 63 12211 111 12345556779999999987764
No 203
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.39 E-value=8.7e-05 Score=70.06 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=85.1
Q ss_pred cccccccccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 181 ~F~~~~~~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
.|-+ .+.||--... ++.+.+..+.. .|. ..+.++||+|+|.|..+..++... ..|.+.+.|..|....+++
T Consensus 83 G~lg-rGsMFifSe~---QF~klL~i~~p-~w~-~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 83 GFLG-RGSMFIFSEE---QFRKLLVIGGP-AWG-QEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccc-cCceEEecHH---HHHHHHhcCCC-ccC-CCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc
Confidence 4555 6677744332 34444444322 222 234789999999999999987652 4578889999999998888
Q ss_pred CCCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCC-CcEEEEEe
Q 012624 261 GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKP-GGYFVLTS 318 (460)
Q Consensus 261 gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkP-GG~lvl~~ 318 (460)
+-++.-. .++--.+-+||+|.|... ..-..++.++|+.++.+|+| .|.++++-
T Consensus 154 ~ynVl~~----~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 154 NYNVLTE----IEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred CCceeee----hhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 7655432 122222346999999874 33336788899999999999 88888764
No 204
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.36 E-value=0.00071 Score=69.89 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=60.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCCC--------C---C----
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP--------Y---P---- 277 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~Lp--------~---~---- 277 (460)
.+|||+|||+|.++..|++.. ..++++|+++.+++.|+++ ++ ++.+...|..++- + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888764 4899999999999998865 33 3556655544321 0 0
Q ss_pred -CCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 278 -SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 278 -~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...||+|+.-=---.+ ...+++.+ ++|++.++++..
T Consensus 276 ~~~~~d~v~lDPPR~G~---~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGL---DPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCCCC---cHHHHHHH---HcCCcEEEEEcC
Confidence 1237888864211111 12344444 348888888865
No 205
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.35 E-value=0.0017 Score=65.37 Aligned_cols=125 Identities=25% Similarity=0.317 Sum_probs=75.7
Q ss_pred cccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhc------cCceeEEEEeeCCHHHHHHHHHc
Q 012624 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL------KLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 187 ~~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~------~~~~~~v~giD~s~~~l~~A~~r 260 (460)
+.+|.. ....+.+.+++....+ .+|+|-.||+|.|...+.+. ......+.|+|+++.++..|+-+
T Consensus 26 G~~~TP-~~i~~l~~~~~~~~~~--------~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 26 GQFYTP-REIVDLMVKLLNPKKG--------DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp GGC----HHHHHHHHHHHTT-TT--------EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred ceeehH-HHHHHHHHhhhhcccc--------ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence 344433 4566777777755443 68999999999998887763 11347899999999998887643
Q ss_pred ----CCC---eEEEeecccCCCC-C-CCCccEEEEcc--cccccc-----c-------------cHHHHHHHHHHhcCCC
Q 012624 261 ----GLP---AMIGNFISRQLPY-P-SLSFDMVHCAQ--CGIIWD-----K-------------KEGIFLIEADRLLKPG 311 (460)
Q Consensus 261 ----gl~---~~~~~~d~~~Lp~-~-~~sFDlVvs~~--~l~~~~-----~-------------d~~~~L~ei~RvLkPG 311 (460)
+.. ..+...|....+. . .+.||+|+++- ....|. . ..-.++..+.+.|++|
T Consensus 97 l~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 97 LLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG 176 (311)
T ss_dssp HHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE
T ss_pred hhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc
Confidence 221 1244444333332 2 47899999962 122110 0 1124788899999999
Q ss_pred cEEEEEeCC
Q 012624 312 GYFVLTSPE 320 (460)
Q Consensus 312 G~lvl~~~~ 320 (460)
|++.+..|.
T Consensus 177 G~~~~Ilp~ 185 (311)
T PF02384_consen 177 GRAAIILPN 185 (311)
T ss_dssp EEEEEEEEH
T ss_pred cceeEEecc
Confidence 999888874
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.35 E-value=0.00086 Score=65.81 Aligned_cols=101 Identities=22% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEeecccCC-CCCCC-CccEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQL-PYPSL-SFDMVH 285 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---------gl~~~~~~~d~~~L-p~~~~-sFDlVv 285 (460)
+++||=||.|.|..+..+.+.. ...+++.+|+++..++.|++- ..++.+...|.... .-..+ +||+|+
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4899999999999999998874 336899999999999998764 12455555544221 11223 899999
Q ss_pred Ecccccccccc----HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 286 CAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 286 s~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.-.. ...... ...+++.+.+.|+|||.+++...
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 156 VDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8532 222111 24689999999999999998873
No 207
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.33 E-value=0.0012 Score=62.84 Aligned_cols=91 Identities=25% Similarity=0.177 Sum_probs=61.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~--~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||+-||.|.|+..+++.+ ....|.++|.++..++..++. ++. +....+|...+.- .+.||-|++.. .
T Consensus 103 e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p 178 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--P 178 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----T
T ss_pred eEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--h
Confidence 789999999999999999842 226799999999988877654 333 4566777776654 78999999874 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEE
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lv 315 (460)
+ .-..+|..+.+++|+||.+-
T Consensus 179 ~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 E---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S---SGGGGHHHHHHHEEEEEEEE
T ss_pred H---HHHHHHHHHHHHhcCCcEEE
Confidence 1 22248888999999999864
No 208
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0017 Score=68.51 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=80.4
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCC----CeEEEeecccCCCCCCCCccEEEEcccccccc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL----PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl----~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~ 294 (460)
++|-+|||.-.+...+.+.|. ..++.+|+|+-.++....++. ...+..+|...+.|++.+||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 899999999999999998876 578899999999988877753 23466778889999999999999876666554
Q ss_pred ccH---------HHHHHHHHHhcCCCcEEEEEeC
Q 012624 295 KKE---------GIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 295 ~d~---------~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.+. ...+.++.|+|+|||+++...-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 322 2357999999999999887665
No 209
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00059 Score=61.21 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=53.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEcc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~ 288 (460)
.+++|+|||.|-+....+--+ ...+.|+|+.++.++.+..+ .+.+.+.+.+...+.+..+.||.++.+-
T Consensus 50 kkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 789999999999885555433 36789999999999988665 3444566667777777778999999874
No 210
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.27 E-value=0.00095 Score=69.19 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=61.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecccCC-C-CC-------------
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL-P-YP------------- 277 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~~~L-p-~~------------- 277 (460)
.+|||++||+|.++..+++.. ..++++|.++.+++.|+++ ++ ++.+...|..+. + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999888763 4799999999999988765 44 355665554431 1 10
Q ss_pred -CCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 278 -SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 278 -~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...||+|+.-=--.. -...+++.+. +|++.++++..
T Consensus 285 ~~~~~D~v~lDPPR~G---~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPRAG---LDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCCCC---CcHHHHHHHH---ccCCEEEEEeC
Confidence 225899987421111 1123444444 47888888765
No 211
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.27 E-value=0.00095 Score=65.81 Aligned_cols=136 Identities=17% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH----c----------------CC-----------C--
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----R----------------GL-----------P-- 263 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~----r----------------gl-----------~-- 263 (460)
..++||||||+-.+-..-+.. ...+++..|.++.-++..++ . |. +
T Consensus 57 g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 368999999996553222222 23578889998877653221 1 10 0
Q ss_pred e-EEEeecccCC-CCCC-----CCccEEEEccccccccccHH---HHHHHHHHhcCCCcEEEEEeCCCCCC---CCCCch
Q 012624 264 A-MIGNFISRQL-PYPS-----LSFDMVHCAQCGIIWDKKEG---IFLIEADRLLKPGGYFVLTSPESKPR---GSSSSR 330 (460)
Q Consensus 264 ~-~~~~~d~~~L-p~~~-----~sFDlVvs~~~l~~~~~d~~---~~L~ei~RvLkPGG~lvl~~~~~~~~---~~~~~~ 330 (460)
+ .+...|..+. |+.. ..||+|++++|+....++.+ .+++++.++|||||.|++........ +...-.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 1 1223344332 2322 35999999999888876665 58999999999999999987643221 110000
Q ss_pred hhhHHHHHHHHHHHHhCeEEEeee
Q 012624 331 KNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 331 e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
-..-.-+.+++..++.++.+..-+
T Consensus 215 ~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ---B-HHHHHHHHHHTTEEEEEEE
T ss_pred cccCCHHHHHHHHHHcCCEEEecc
Confidence 112223456666677788775544
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.26 E-value=0.0019 Score=62.10 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=69.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecc-cCCC-----CCCCCccEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFIS-RQLP-----YPSLSFDMVH 285 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~-~~Lp-----~~~~sFDlVv 285 (460)
+++||||.=||.-+..++..-+....++++|+++...+.+.+. |+ .+.+..+.+ +.|+ .+.++||+++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 7899999988888877777755567999999999988877543 32 233333322 1111 3578999998
Q ss_pred EccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 286 s~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
. -++-++-...+.++.+++|+||.+++-.
T Consensus 155 v----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 155 V----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred E----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 5 3454444468999999999999998764
No 213
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.22 E-value=0.004 Score=63.47 Aligned_cols=103 Identities=13% Similarity=0.014 Sum_probs=65.5
Q ss_pred CeEEEeCCCCchHHHHHHhcc---CceeEEEEeeCCHHHHHHHHHcCC----C-eEE--EeecccC----CCC--CCCCc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLALERGL----P-AMI--GNFISRQ----LPY--PSLSF 281 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~---~~~~~v~giD~s~~~l~~A~~rgl----~-~~~--~~~d~~~----Lp~--~~~sF 281 (460)
..++|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ ..+|..+ ++- ..+..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 579999999998776665541 123678999999999998765411 1 222 2222211 221 12345
Q ss_pred cEEEEcccc-ccccc-cHHHHHHHHHH-hcCCCcEEEEEeCC
Q 012624 282 DMVHCAQCG-IIWDK-KEGIFLIEADR-LLKPGGYFVLTSPE 320 (460)
Q Consensus 282 DlVvs~~~l-~~~~~-d~~~~L~ei~R-vLkPGG~lvl~~~~ 320 (460)
.+++.-... -++.+ +...+|+++.+ .|+|||.|++..-.
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 677665433 34432 22368999999 99999999987543
No 214
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0022 Score=60.97 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=64.2
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC--------CCCCCccEEEEcc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQ 288 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp--------~~~~sFDlVvs~~ 288 (460)
..+|+|+|+..|+|+..+++.......|+++|+.+-- .-..+.+.++|...-+ +....+|+|+|-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 3799999999999999999885444458999987631 1122555555544322 3345589999742
Q ss_pred c---ccccc-ccH------HHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 289 C---GIIWD-KKE------GIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 289 ~---l~~~~-~d~------~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
. .-++. ++. ..++.-+..+|+|||.|+.-....
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 1 11221 111 235666778999999999988743
No 215
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.14 E-value=0.0013 Score=66.26 Aligned_cols=87 Identities=9% Similarity=-0.041 Sum_probs=62.5
Q ss_pred HHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC---CCeEEEeeccc
Q 012624 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISR 272 (460)
Q Consensus 196 ~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg---l~~~~~~~d~~ 272 (460)
+.+++.+.+...++ ..+||.+||.|..+..+++.......|+|+|.++.+++.|+++- -++.+...+..
T Consensus 7 ll~Evl~~L~~~pg--------~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKPD--------GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCCC--------CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHH
Confidence 45566666665544 68999999999999999998543468999999999999998762 24555555544
Q ss_pred CCC--CCCC--CccEEEEcccc
Q 012624 273 QLP--YPSL--SFDMVHCAQCG 290 (460)
Q Consensus 273 ~Lp--~~~~--sFDlVvs~~~l 290 (460)
++. .+++ +||.|++-...
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCc
Confidence 432 1122 79999986543
No 216
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.012 Score=58.16 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=78.2
Q ss_pred HHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeec
Q 012624 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFI 270 (460)
Q Consensus 197 ~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d 270 (460)
+..|..++...++ .+|||-|.|+|+++.++++.-.....+...|.++.-.+.|++. ++ .+.+..-|
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 4567788888877 8999999999999999998855557889999999888877764 32 34444444
Q ss_pred ccCCCC--CCCCccEEEEccccccccccHHHHHHHHHHhcCCCc-EEEEEeCC
Q 012624 271 SRQLPY--PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGG-YFVLTSPE 320 (460)
Q Consensus 271 ~~~Lp~--~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG-~lvl~~~~ 320 (460)
.....| .+..+|+|+.-. ...| .++--++.+||.+| +|.-..|.
T Consensus 166 Vc~~GF~~ks~~aDaVFLDl-PaPw-----~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLDL-PAPW-----EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cccCCccccccccceEEEcC-CChh-----hhhhhhHHHhhhcCceEEeccHH
Confidence 444443 467899998753 2333 36666777888876 66555554
No 217
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.12 E-value=0.0023 Score=66.79 Aligned_cols=102 Identities=21% Similarity=0.102 Sum_probs=75.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC---CeEEEeecccCC-C---CCCCCccEEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIGNFISRQL-P---YPSLSFDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl---~~~~~~~d~~~L-p---~~~~sFDlVvs 286 (460)
++|||+=|=||.++.+.+..|. .+++++|.|...++.|+++ |+ +..+..+|+..+ . -...+||+|+.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 7899999999999999998874 4899999999999999876 43 245666654332 1 12348999998
Q ss_pred cc--------ccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 287 AQ--------CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 287 ~~--------~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
-= .......+...++..+.++|+|||.++++....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 31 111112344568899999999999999998644
No 218
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.12 E-value=0.0045 Score=67.22 Aligned_cols=71 Identities=21% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCeEEEeCCCCchHHHHHHhccC-------ceeEEEEeeCCHHHHHHHHHc----C-CCeEEEeecccC--C---CCCCC
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKL-------MAVCVAVYEATGSQVQLALER----G-LPAMIGNFISRQ--L---PYPSL 279 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~-------~~~~v~giD~s~~~l~~A~~r----g-l~~~~~~~d~~~--L---p~~~~ 279 (460)
..+|||.|||+|.+...++++.. ....+.|+|+++..+..++.. + ....+...+... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 36899999999999988877531 236789999999999888654 1 122222222111 1 11125
Q ss_pred CccEEEEc
Q 012624 280 SFDMVHCA 287 (460)
Q Consensus 280 sFDlVvs~ 287 (460)
.||+|+++
T Consensus 112 ~fD~IIgN 119 (524)
T TIGR02987 112 LFDIVITN 119 (524)
T ss_pred cccEEEeC
Confidence 79999997
No 219
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0059 Score=59.18 Aligned_cols=130 Identities=20% Similarity=0.215 Sum_probs=90.8
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEE-eecccCCC---CCCCCccEEEEcccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIG-NFISRQLP---YPSLSFDMVHCAQCGII 292 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~-~~d~~~Lp---~~~~sFDlVvs~~~l~~ 292 (460)
.+.+||||+-||.|+..++++|. ..|+++|..-.|+.+-.+...++... ..+...+. +. +..|+++|--+++.
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFIS 156 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFIS 156 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehhh
Confidence 48999999999999999999986 58999999999998877766655433 22333332 22 36789998643333
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC--------CCC-CchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPR--------GSS-SSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~--------~~~-~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
...+|-.+..+++|||.++...-+.-.. +-. .+..+...-..+..+++..+|....-
T Consensus 157 ----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 157 ----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3458999999999999988765443211 111 12244555677888888889987553
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.08 E-value=0.0019 Score=61.69 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=65.4
Q ss_pred ccccc-hhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------
Q 012624 188 LVFDG-VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------ 260 (460)
Q Consensus 188 ~~fd~-~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------ 260 (460)
..|.. .......+.+.+....+ ...+|||||.|......+-.. .....+|+|+.+...+.|.+.
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~~--------dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTPD--------DVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--TT---------EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCCCCC--------CEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 44533 33445556666665544 799999999999877666542 124579999999877666431
Q ss_pred -----CC---CeEEEeecccCCCCCC---CCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 261 -----GL---PAMIGNFISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 261 -----gl---~~~~~~~d~~~Lp~~~---~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+. ++.+..+|..+.++.. ..-|+|+++... +.++....|.++..-||+|-+++-..+
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 22 2334444332211100 235899998632 335566677888899999988765443
No 221
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.05 E-value=0.0025 Score=59.81 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~--~~~~ 267 (460)
+..-+.+...+... . -...+|||+=||+|.++...+.+|. ..++.+|.+...++..+++ +.. ..+.
T Consensus 26 drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 26 DRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp HHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred HHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence 44555666666543 0 0127999999999999999999986 5788999999988877665 332 3444
Q ss_pred eeccc-CC---CCCCCCccEEEEcccccccccc--HHHHHHHHH--HhcCCCcEEEEEeCCC
Q 012624 268 NFISR-QL---PYPSLSFDMVHCAQCGIIWDKK--EGIFLIEAD--RLLKPGGYFVLTSPES 321 (460)
Q Consensus 268 ~~d~~-~L---p~~~~sFDlVvs~~~l~~~~~d--~~~~L~ei~--RvLkPGG~lvl~~~~~ 321 (460)
..|.. .+ ......||+|++-= .+... ...++..+. .+|+++|.+++.....
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 33321 12 12467899999752 22222 255777776 7899999998887643
No 222
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0044 Score=59.15 Aligned_cols=120 Identities=21% Similarity=0.209 Sum_probs=82.2
Q ss_pred ccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCC----C
Q 012624 188 LVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL----P 263 (460)
Q Consensus 188 ~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl----~ 263 (460)
-|-.-...+.+..++.+..+. ++||.||-|-|.....+.++.+. .-.-++.++..++..++-|- +
T Consensus 82 VMm~WEtpiMha~A~ai~tkg---------grvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~n 150 (271)
T KOG1709|consen 82 VMMRWETPIMHALAEAISTKG---------GRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKEN 150 (271)
T ss_pred hhhhhhhHHHHHHHHHHhhCC---------ceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccc
Confidence 344444567778888777433 69999999999999888887553 33457999999988876643 2
Q ss_pred eEEEeeccc-CC-CCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 264 AMIGNFISR-QL-PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 264 ~~~~~~d~~-~L-p~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.+..+-=+ .+ .++++.||-|.---...+. +|...+.+.+.|+|||+|.+-+..-
T Consensus 151 Viil~g~WeDvl~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 151 VIILEGRWEDVLNTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred eEEEecchHhhhccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEecC
Confidence 222221101 11 2568899999875322344 6667789999999999999877654
No 223
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.98 E-value=0.0058 Score=62.45 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=62.1
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
..++|||||++|.|+..|.++| ..|+++|..+ |-... .....+.....+.....-+.+.+|.++|-.+ ..
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e~ 281 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----EK 281 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc-----cC
Confidence 4799999999999999999997 4899999654 32222 2233455554444333222678999999643 56
Q ss_pred HHHHHHHHHHhcCCC--cEEEEEe
Q 012624 297 EGIFLIEADRLLKPG--GYFVLTS 318 (460)
Q Consensus 297 ~~~~L~ei~RvLkPG--G~lvl~~ 318 (460)
+.++++-+.+.|..| ..+++.-
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEE
Confidence 667777788888766 3444444
No 224
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.97 E-value=0.0042 Score=61.39 Aligned_cols=106 Identities=16% Similarity=0.038 Sum_probs=75.8
Q ss_pred ccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---CCCeEE
Q 012624 190 FDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMI 266 (460)
Q Consensus 190 fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---gl~~~~ 266 (460)
|=......+.+.+.+....+ ..|||||+|+|.++..|++.+ ..++++|.++.+.+..+++ ..++.+
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~v 80 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEV 80 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEE
T ss_pred eeCCHHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhccccee
Confidence 43345688888888876554 799999999999999999986 5899999999999988875 456778
Q ss_pred EeecccCCCCCC---CCccEEEEccccccccccHHHHHHHHHHhcCC
Q 012624 267 GNFISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKP 310 (460)
Q Consensus 267 ~~~d~~~Lp~~~---~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkP 310 (460)
...|...+...+ +.-..|+++-- ++. ...++.++...-+.
T Consensus 81 i~~D~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 81 INGDFLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp EES-TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred eecchhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 888887776544 44556776531 222 22356666654344
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.83 E-value=0.009 Score=57.43 Aligned_cols=119 Identities=23% Similarity=0.214 Sum_probs=77.3
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH----HcCCC-eEEEeecccCCCCCCCC-ccEEEEcccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLP-AMIGNFISRQLPYPSLS-FDMVHCAQCG 290 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~----~rgl~-~~~~~~d~~~Lp~~~~s-FDlVvs~~~l 290 (460)
..+++|||+|.|.=+.-|+-..+ ..+++-+|....-+.+.+ +-+++ +.+....++.+.- +.. ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeehc-
Confidence 37999999999998888774332 256899999876655443 33776 7777776776652 123 999999853
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEe
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~ 352 (460)
.....++.-....+|+||.++..-.. .......+.+......++.+..
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~~----------~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKGL----------AGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhHH----------hhhhhHHHHHHHHHhhcCcEEE
Confidence 33344666778899999987644321 2233444555555555555433
No 226
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.82 E-value=0.02 Score=58.71 Aligned_cols=118 Identities=19% Similarity=0.059 Sum_probs=86.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|||.=+|.|.|+..++..+.. .|+++|+++..++..+++ ++ .+....+|........+.||-|++...
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p-- 265 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP-- 265 (341)
T ss_pred CEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC--
Confidence 78999999999999999998753 399999999999988765 22 244666777777655588999998752
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCe
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 348 (460)
.....++....+.+++||.+.+.+........ ......+...+.+.+.
T Consensus 266 ---~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~------~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 266 ---KSAHEFLPLALELLKDGGIIHYYEFVPEDDIE------ERPEKRIKSAARKGGY 313 (341)
T ss_pred ---CcchhhHHHHHHHhhcCcEEEEEeccchhhcc------cchHHHHHHHHhhccC
Confidence 23345788888999999999999876533211 0133455566665544
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.82 E-value=0.0042 Score=64.70 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=71.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEeecccCCC-CCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~~d~~~Lp-~~~~sFDlVvs~~~l~ 291 (460)
-+|||+.||+|..+..++.+......|+++|+++..++.++++ ++. +.+...|...+- ...+.||+|..- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD-P-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID-P-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC-C--
Confidence 4799999999999999998732225799999999999888664 332 445555544332 123579999874 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+ ..+..++..+.+.+++||.+.++....
T Consensus 123 -f-Gs~~~fld~al~~~~~~glL~vTaTD~ 150 (374)
T TIGR00308 123 -F-GTPAPFVDSAIQASAERGLLLVTATDT 150 (374)
T ss_pred -C-CCcHHHHHHHHHhcccCCEEEEEeccc
Confidence 2 233458999999999999999995443
No 228
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.79 E-value=0.0028 Score=63.57 Aligned_cols=101 Identities=21% Similarity=0.172 Sum_probs=67.9
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC---CeEEEeecccC-CC--CCCCCccEEEEc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL---PAMIGNFISRQ-LP--YPSLSFDMVHCA 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl---~~~~~~~d~~~-Lp--~~~~sFDlVvs~ 287 (460)
++|||+=|=||.|+.+.+..|. .+++.+|.|...++.++++ ++ ...+...|+.. +. -..+.||+|++-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 7999999999999999887663 5789999999999999876 43 34455555432 11 124689999983
Q ss_pred ---cc--cccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 288 ---QC--GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 288 ---~~--l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+. -.....+...++..+.++|+|||.++.+...
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11 1112234456888999999999999887763
No 229
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.77 E-value=0.012 Score=66.36 Aligned_cols=103 Identities=16% Similarity=0.032 Sum_probs=68.5
Q ss_pred CeEEEeCCCCchHHHHHHhcc-----------------------------------------CceeEEEEeeCCHHHHHH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK-----------------------------------------LMAVCVAVYEATGSQVQL 256 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~-----------------------------------------~~~~~v~giD~s~~~l~~ 256 (460)
..++|-+||+|++....+... .....++|+|+++.+++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 689999999999997775420 011368999999999999
Q ss_pred HHHc----CCC--eEEEeecccCCCCC--CCCccEEEEcccc-cccc--ccHHHHHHHHHHhc---CCCcEEEEEeCC
Q 012624 257 ALER----GLP--AMIGNFISRQLPYP--SLSFDMVHCAQCG-IIWD--KKEGIFLIEADRLL---KPGGYFVLTSPE 320 (460)
Q Consensus 257 A~~r----gl~--~~~~~~d~~~Lp~~--~~sFDlVvs~~~l-~~~~--~d~~~~L~ei~RvL---kPGG~lvl~~~~ 320 (460)
|+++ |+. +.+...|..+++.+ .++||+|+++--. ..+. .+...+..++-+.| .+|+.+++..+.
T Consensus 272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 272 ARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 9876 543 56667777776543 3579999998311 1111 22233444444444 489988877664
No 230
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.71 E-value=0.018 Score=57.50 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCeEEEeCCCCchHHH-HHHhccCceeEEEEeeCCHHHHHHHHHc-------CCCeEEEeecccCCCCCCCCccEEEEcc
Q 012624 217 VQSVLDVGCGFGSFGA-HLVSLKLMAVCVAVYEATGSQVQLALER-------GLPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~-~La~~~~~~~~v~giD~s~~~l~~A~~r-------gl~~~~~~~d~~~Lp~~~~sFDlVvs~~ 288 (460)
+++|+=||+|.=-++. .|+++......++++|++++.++.+++- +....+..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 3699999999765554 4444433457899999999999888542 3455677666666654446899999874
Q ss_pred cccccc-ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 289 CGIIWD-KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 289 ~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.... .+..+++..+.+.++||..+++...
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 55543 3556799999999999999998844
No 231
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.012 Score=62.35 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEe
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGN 268 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~-~~~~~ 268 (460)
..+++...+.+....+ .++||+=||.|.|+..|+++. .+|+|+|+++++++.|++. ++. +.+..
T Consensus 279 ekl~~~a~~~~~~~~~--------~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~ 347 (432)
T COG2265 279 EKLYETALEWLELAGG--------ERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIA 347 (432)
T ss_pred HHHHHHHHHHHhhcCC--------CEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 3455555566655443 789999999999999999764 6899999999999988765 443 66776
Q ss_pred ecccCCCCC---CCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 269 FISRQLPYP---SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 269 ~d~~~Lp~~---~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
++.++..-. ...+|.|+.-=---.. + ..+++.+. .++|-..++++..+
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~--~-~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGA--D-REVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCCC--C-HHHHHHHH-hcCCCcEEEEeCCH
Confidence 776665422 3578999864211111 1 13555554 46778888888753
No 232
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.037 Score=52.04 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHccC-CCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----C--CCeE
Q 012624 193 VKDYSRQIAEMIGLG-TDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G--LPAM 265 (460)
Q Consensus 193 ~~~~~~~i~~~l~~~-~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----g--l~~~ 265 (460)
.+..-+.+..++... . ...++||+=+|+|.++...+.+|. ..++.+|.+....+..+++ + ....
T Consensus 26 ~drVREalFNil~~~~i-------~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~ 96 (187)
T COG0742 26 TDRVREALFNILAPDEI-------EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEAR 96 (187)
T ss_pred chHHHHHHHHhcccccc-------CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceE
Confidence 344555666666541 1 137999999999999999999986 5788899999988877765 3 3344
Q ss_pred EEeecccCC-CCCCC--CccEEEEcccccccc-ccHHHHHHH--HHHhcCCCcEEEEEeCCC
Q 012624 266 IGNFISRQL-PYPSL--SFDMVHCAQCGIIWD-KKEGIFLIE--ADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 266 ~~~~d~~~L-p~~~~--sFDlVvs~~~l~~~~-~d~~~~L~e--i~RvLkPGG~lvl~~~~~ 321 (460)
+...|+... +-... .||+|+.-= =++.. -+....+.. -..+|+|||.+++.....
T Consensus 97 ~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 97 VLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 444444422 11222 499999752 12211 111222333 557899999999987644
No 233
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.51 E-value=0.014 Score=56.26 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=66.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCH----HHHHHHHHcC-CCeEEEeecc-cCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG----SQVQLALERG-LPAMIGNFIS-RQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~----~~l~~A~~rg-l~~~~~~~d~-~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+||-+|.++|....++++--.....|.+++.|+ ..+..|++|. +-..+.++.. +....--+.+|+|++- +
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D-V-- 151 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD-V-- 151 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE----
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec-C--
Confidence 7999999999999999998743345789999998 4566776663 2223333310 0011112479999975 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.-+++.+.++.++...||+||.++++-..
T Consensus 152 aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 152 AQPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp SSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 22245556888899999999999998654
No 234
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.014 Score=54.99 Aligned_cols=135 Identities=17% Similarity=0.059 Sum_probs=73.4
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCH----------HHHHHHHHcCC-CeEEEeecccCCC-------CCCC
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG----------SQVQLALERGL-PAMIGNFISRQLP-------YPSL 279 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~----------~~l~~A~~rgl-~~~~~~~d~~~Lp-------~~~~ 279 (460)
.+|+|+=.|.|.|++.++..-.....|+++-..+ .+-..+++... +.+........++ .+..
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~~~ 129 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPTA 129 (238)
T ss_pred CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccccc
Confidence 8999999999999999988622223555543322 22223322211 1111111111121 2233
Q ss_pred CccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCC--chhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 280 SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSS--SRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 280 sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~--~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
++|.++... .+| .....++..++++.|||||.+++.++....-.... ...++-.-..+..-.+..+|++..+.
T Consensus 130 ~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 130 QNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred hhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 455444443 233 24456789999999999999999999765421110 00111122334555677888886664
No 235
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.0025 Score=57.80 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=45.1
Q ss_pred ccCCCCCCCCccEEEEccccccccc-cHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 271 SRQLPYPSLSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 271 ~~~Lp~~~~sFDlVvs~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
....+|.+++.|+|.+.+++.|+.- +...++++++|+|||||++-++.|....
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 4566799999999999999999873 3446899999999999999999987653
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.25 E-value=0.013 Score=52.24 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=36.2
Q ss_pred CCeEEEeCCCCchHHHHHHh-----ccCceeEEEEeeCCHHHHHHHHHc
Q 012624 217 VQSVLDVGCGFGSFGAHLVS-----LKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~-----~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
..+|+|+|||.|.++..|+. . ....++++|.++..++.+.++
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 47999999999999999988 3 347899999999998877665
No 237
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.036 Score=55.79 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=91.5
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHH---HHH----HcCC----C
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ---LAL----ERGL----P 263 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~---~A~----~rgl----~ 263 (460)
..++++....+.... ....-+||-=|||.|.++..|+..|. ...|-+.|--|+- ++. ..+- +
T Consensus 133 pii~~l~~lfp~~~~----~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGK----ERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hHHHHHHhhCCCccc----cccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 455555555544221 12235799999999999999999874 5566677766642 222 1110 0
Q ss_pred eE-----------------E-----------------Eeeccc---CCCCCCCCccEEEEccccccccccHHHHHHHHHH
Q 012624 264 AM-----------------I-----------------GNFISR---QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADR 306 (460)
Q Consensus 264 ~~-----------------~-----------------~~~d~~---~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~R 306 (460)
+. + ..+|.. ..+-..++||+|+..+ ++.-..+.-.++..|..
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~ 284 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYK 284 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHH
Confidence 00 0 000000 0001124699999875 33333455568999999
Q ss_pred hcCCCcEEEEEeCCCCCCCC----CCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 307 LLKPGGYFVLTSPESKPRGS----SSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 307 vLkPGG~lvl~~~~~~~~~~----~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
+|||||+++-..|...+-.. .+...-.-..+.+..+++..+|+++..+
T Consensus 285 iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 285 ILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred hccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 99999999988886654211 1111223446778888999999998765
No 238
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.22 E-value=0.02 Score=54.02 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=65.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH----HcCCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~----~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
++|||+|.|+|..+..-+..|. ..++..|+.+...+... .+++.+.+...|. -..+..||+++...+++.-
T Consensus 81 krVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEeeceecCc
Confidence 7999999999999988888775 46777788876665443 2344444443332 2367789999999865544
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+...+++.-..++...|-.+++-+|..
T Consensus 156 -~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 156 -TEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred -hHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 344456774445555566666666644
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.091 Score=54.40 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=70.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCc-eeEEEEeeCCHHHHHHHHHc----CCCe-EEEeecccCCC---CCCCCccEEEEc-
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQLALER----GLPA-MIGNFISRQLP---YPSLSFDMVHCA- 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~-~~~v~giD~s~~~l~~A~~r----gl~~-~~~~~d~~~Lp---~~~~sFDlVvs~- 287 (460)
.+|||+.++.|.=+.++++.... ...|+++|.++.-++..+++ |+.. .....|...++ ...+.||.|+.-
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDa 237 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDA 237 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECC
Confidence 89999999999988888887332 34569999999776655443 6553 44444444433 222359999862
Q ss_pred ----ccccc------c--cc-c-------HHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 288 ----QCGII------W--DK-K-------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 288 ----~~l~~------~--~~-d-------~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
...++ | .. + ..++|....++|||||.++.++-....
T Consensus 238 PCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 238 PCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 11111 1 10 1 124789999999999999999875533
No 240
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.00 E-value=0.047 Score=54.13 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=58.9
Q ss_pred CCCeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---CCC--eEEEeecccCC-------------C
Q 012624 216 GVQSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLP--AMIGNFISRQL-------------P 275 (460)
Q Consensus 216 ~~~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---gl~--~~~~~~d~~~L-------------p 275 (460)
+++..||||||- ......++++-....+|.-+|..+..+..++.. +.. ..+..+|..+. .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 468999999994 346666766644558899999999988866553 333 55666654331 1
Q ss_pred CCCCCccEEEEcccccccc--ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 276 YPSLSFDMVHCAQCGIIWD--KKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 276 ~~~~sFDlVvs~~~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+ ++.. .|++..+++++. +++..++..+...|.||.+|+++-...
T Consensus 148 ~-~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 148 F-DRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp T-TS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred C-CCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 1 2333 334444455554 356789999999999999999997643
No 241
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.97 E-value=0.15 Score=48.79 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=73.0
Q ss_pred EEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecc-cCCCCCCCCccEEEEcccccc
Q 012624 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFIS-RQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 220 VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~-~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
|.||||--|.+..+|.+++. ...+++.|+++.-++.|++. ++ .+.+..+|. ..++ +.+..|.|+.+.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGM--G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGM--G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE---
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecC--C
Confidence 68999999999999999975 35789999999999988765 32 344444443 3333 2223788887642 2
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
- .-....|.+....++....|++.-.. ....++.+..+.+|.+..+.
T Consensus 77 G-~lI~~ILe~~~~~~~~~~~lILqP~~--------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 G-ELIIEILEAGPEKLSSAKRLILQPNT--------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp H-HHHHHHHHHTGGGGTT--EEEEEESS---------------HHHHHHHHHHTTEEEEEEE
T ss_pred H-HHHHHHHHhhHHHhccCCeEEEeCCC--------------ChHHHHHHHHHCCCEEEEeE
Confidence 2 12234666666777766677665431 24567788899999997764
No 242
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.88 E-value=0.011 Score=54.43 Aligned_cols=66 Identities=21% Similarity=0.157 Sum_probs=44.3
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCC--CCCCC-ccEEEEc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLS-FDMVHCA 287 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp--~~~~s-FDlVvs~ 287 (460)
+|+|+.||.|..+..+++.. ..|+++|+++..++.|+.+ |+ ++.+..+|..++. +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999985 5799999999999998765 44 4566666644331 11122 8999975
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.79 E-value=0.06 Score=55.28 Aligned_cols=105 Identities=18% Similarity=0.051 Sum_probs=72.5
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------------CCCeEEEeecccCC-CCCCCCccE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------------GLPAMIGNFISRQL-PYPSLSFDM 283 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------------gl~~~~~~~d~~~L-p~~~~sFDl 283 (460)
.++||-+|.|.|.-++.+.+. +...+++-+|.+++|++.++.. ..++.+...|+.++ .-..+.||.
T Consensus 290 a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 479999999999999999987 3347899999999999998743 12333444343332 123458999
Q ss_pred EEEccccccccccH-----HHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 284 VHCAQCGIIWDKKE-----GIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 284 Vvs~~~l~~~~~d~-----~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
|+.-. .-.-.+.. ..+..-+.|.|+++|.+++.......
T Consensus 369 vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 369 VIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred EEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 99753 11111111 24677888999999999998765543
No 244
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.78 E-value=0.0035 Score=52.73 Aligned_cols=96 Identities=19% Similarity=0.075 Sum_probs=38.3
Q ss_pred EEeCCCCchHHHHHHhccCce--eEEEEeeCCH---HHHHHHHHcCC--CeEEEeecccCC-C-CCCCCccEEEEccccc
Q 012624 221 LDVGCGFGSFGAHLVSLKLMA--VCVAVYEATG---SQVQLALERGL--PAMIGNFISRQL-P-YPSLSFDMVHCAQCGI 291 (460)
Q Consensus 221 LDIGCGtG~~a~~La~~~~~~--~~v~giD~s~---~~l~~A~~rgl--~~~~~~~d~~~L-p-~~~~sFDlVvs~~~l~ 291 (460)
||||+..|..+..+++.-... .+++++|..+ ...+..++.++ .+.+...+..+. + ++.++||+++.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 689999999888887642111 3689999988 33444433322 355555543221 1 2357899999863 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
|-.+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 322445567889999999999998865
No 245
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.76 E-value=0.026 Score=58.29 Aligned_cols=51 Identities=27% Similarity=0.256 Sum_probs=37.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEeecc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFIS 271 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl-~~~~~~~d~ 271 (460)
.+|||+=||+|.++..|++.. .+|+|+|+++++++.|++. ++ ++.+..+++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 379999999999999999875 5899999999999988765 43 345554443
No 246
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.72 E-value=0.11 Score=54.15 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCCCCccEEEEcccccccccc--------------------------------------HHHHHHHHHHhcCCCcEEEEE
Q 012624 276 YPSLSFDMVHCAQCGIIWDKK--------------------------------------EGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 276 ~~~~sFDlVvs~~~l~~~~~d--------------------------------------~~~~L~ei~RvLkPGG~lvl~ 317 (460)
||+++.+++|++++ +||... ...+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 88999999999984 677421 112333345668999999999
Q ss_pred eCCCCC
Q 012624 318 SPESKP 323 (460)
Q Consensus 318 ~~~~~~ 323 (460)
......
T Consensus 237 ~~Gr~~ 242 (386)
T PLN02668 237 CLGRTS 242 (386)
T ss_pred EecCCC
Confidence 877644
No 247
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.15 Score=53.05 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=81.9
Q ss_pred ccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCce--------------------------
Q 012624 188 LVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMA-------------------------- 241 (460)
Q Consensus 188 ~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~-------------------------- 241 (460)
..+++.+..-+.|+..+-...+ |.. ...++|==||+|++....+-.+...
T Consensus 167 R~~~g~ApLketLAaAil~lag--w~~--~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ 242 (381)
T COG0116 167 RVYDGPAPLKETLAAAILLLAG--WKP--DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLRE 242 (381)
T ss_pred cccCCCCCchHHHHHHHHHHcC--CCC--CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHH
Confidence 3444444455555544432221 111 1579999999999998877664210
Q ss_pred -----e-------EEEEeeCCHHHHHHHHHc----CCC--eEEEeecccCCCCCCCCccEEEEcccccc--cccc--HH-
Q 012624 242 -----V-------CVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGII--WDKK--EG- 298 (460)
Q Consensus 242 -----~-------~v~giD~s~~~l~~A~~r----gl~--~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~--~~~d--~~- 298 (460)
. .++|.|+++.+++.|+.+ |+. +.+.++|...++-+-+.+|+|+|+- =+. +... ..
T Consensus 243 ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP-PYGeRlg~~~~v~~ 321 (381)
T COG0116 243 EAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP-PYGERLGSEALVAK 321 (381)
T ss_pred HHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC-CcchhcCChhhHHH
Confidence 0 377999999999998766 444 6788888888864447899999982 111 1111 12
Q ss_pred ---HHHHHHHHhcCCCcEEEEEeC
Q 012624 299 ---IFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 299 ---~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.+.+.+.+.++--+.++++..
T Consensus 322 LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 322 LYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcc
Confidence 244566677777788888876
No 248
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.042 Score=56.05 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH--HcCCCeE-----EEeecccCCCCC-CCCccEEEEcc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL--ERGLPAM-----IGNFISRQLPYP-SLSFDMVHCAQ 288 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~--~rgl~~~-----~~~~d~~~Lp~~-~~sFDlVvs~~ 288 (460)
+.++||+|.|.|.-+-.+-+--+.--+++-++.|+..-+... +.++... -.+....+++++ ...|++|+...
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 467999999988766555444333344555667765544321 1222111 111112234432 34677777665
Q ss_pred ccccccc--cHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 289 CGIIWDK--KEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 289 ~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
-+.+... .....++.+..++.|||.|++.+++.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 4555421 12237888899999999999999865
No 249
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.49 E-value=0.024 Score=49.98 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=35.0
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
++||||||.|.++..+++.+.. .+++++|+++.+.+.+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHH
Confidence 4899999999999999987643 4899999999999877654
No 250
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.13 E-value=0.067 Score=50.24 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=67.9
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----CCCeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
..+.|+|.|+|.++...+... -+|++++.++.-.+.|.++ -.+..+..+|+....| ..-|+|+|-. +-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDT 107 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDT 107 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhH
Confidence 579999999999987776652 5899999999988888776 2345677777777777 4579999864 222
Q ss_pred -cc-ccHHHHHHHHHHhcCCCcEEEE
Q 012624 293 -WD-KKEGIFLIEADRLLKPGGYFVL 316 (460)
Q Consensus 293 -~~-~d~~~~L~ei~RvLkPGG~lvl 316 (460)
.. +....++..+...||-.|.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 12 2223477888888888888763
No 251
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.83 E-value=0.17 Score=50.79 Aligned_cols=104 Identities=26% Similarity=0.305 Sum_probs=69.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeE-EEeecccCC-C-CCCCCccEEEE----
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM-IGNFISRQL-P-YPSLSFDMVHC---- 286 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~-~~~~d~~~L-p-~~~~sFDlVvs---- 286 (460)
.+|||+.+|.|.=+.++++.-.....+++.|++..-+...+++ |+... ....|.... + .....||.|+.
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 7899999999999988888744346899999999877765443 55443 333444433 1 22346999986
Q ss_pred ccc-cccccc---------c-------HHHHHHHHHHhc----CCCcEEEEEeCCC
Q 012624 287 AQC-GIIWDK---------K-------EGIFLIEADRLL----KPGGYFVLTSPES 321 (460)
Q Consensus 287 ~~~-l~~~~~---------d-------~~~~L~ei~RvL----kPGG~lvl~~~~~ 321 (460)
+.. .+.-.+ + ..++|+.+.+.+ ||||+++.++-..
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 210 111011 1 124789999999 9999999998743
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.56 E-value=0.096 Score=49.80 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=33.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
-.+.|||||.|.+...|+...+. .-+.|.++-....+..++|
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~R 103 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKER 103 (249)
T ss_pred ceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHH
Confidence 45899999999999999998654 5788998877766666554
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.37 E-value=1.4 Score=42.01 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHH----HHHHHHc-CCCeEEEeecc-cCCCCCCCCccEEEEccc
Q 012624 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQ----VQLALER-GLPAMIGNFIS-RQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 216 ~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~----l~~A~~r-gl~~~~~~~d~-~~Lp~~~~sFDlVvs~~~ 289 (460)
+..+||=+|..+|+...++++--. ...+.+++.|+.+ +..|.+| ++-..+.++.. +...+--+..|+|+.--
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV- 153 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV- 153 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec-
Confidence 348999999999999999988632 3568899999865 4456665 33333444311 01111224588887641
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
.-++..+.+..++...||+||+++++--......+. +....+..-..-.++-+|+.+.+-
T Consensus 154 --AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~---dp~~vf~~ev~kL~~~~f~i~e~~ 213 (231)
T COG1889 154 --AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA---DPEEVFKDEVEKLEEGGFEILEVV 213 (231)
T ss_pred --CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccC---CHHHHHHHHHHHHHhcCceeeEEe
Confidence 112344457888999999999888876544333221 223444433333444556665543
No 254
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.36 E-value=0.11 Score=53.19 Aligned_cols=94 Identities=20% Similarity=0.161 Sum_probs=68.0
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+|+=+|+| .|..+..+++.-. .+|+++|.+++-.+.|++.|....+...+.....--.+.||+|+..- .
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv------~- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV------G- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC------C-
Confidence 677777766 5678888888522 78999999999999999988766655322222221123499999763 1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
...+....+.||+||.+++.....
T Consensus 239 -~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEEECCCC
Confidence 236788889999999999988763
No 255
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.091 Score=56.11 Aligned_cols=64 Identities=30% Similarity=0.367 Sum_probs=50.3
Q ss_pred ccccccc----hhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 186 DGLVFDG----VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 186 ~~~~fd~----~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
.+++|+. ++..+..+.+......+ ..+||+-||||.++..+++.- ..|+|+++++..++.|+..
T Consensus 357 p~AFFQ~Nt~~aevLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~n 424 (534)
T KOG2187|consen 357 PGAFFQTNTSAAEVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKN 424 (534)
T ss_pred CchhhccCcHHHHHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhc
Confidence 4566643 34556667777776665 789999999999999998763 5899999999999998765
No 256
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.51 E-value=0.51 Score=47.70 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---C--C--Ce
Q 012624 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G--L--PA 264 (460)
Q Consensus 192 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---g--l--~~ 264 (460)
+...|+..+.+.+...... . ...-++||||+|....-..|..+- ...+++|+|+++..++.|++. + + .+
T Consensus 81 ~R~nYi~~i~DlL~~~~~~--~-~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I 156 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG--I-PEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRI 156 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG--C-S---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTE
T ss_pred hhHHHHHHHHHHhhccccc--c-ccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccce
Confidence 3457888888888754331 0 113589999999875544444331 248999999999999999764 2 2 23
Q ss_pred EEEeecc-c----CCCCCCCCccEEEEccc
Q 012624 265 MIGNFIS-R----QLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 265 ~~~~~d~-~----~Lp~~~~sFDlVvs~~~ 289 (460)
.+..... . .+..++..||+.+|+=-
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE---
T ss_pred EEEEcCCccccchhhhcccceeeEEecCCc
Confidence 3322211 1 12223468999999853
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.36 E-value=0.72 Score=45.34 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=69.7
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeEEEeecccCCCCCCCCccEEEEcccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
+.+|+|||||.=-++....... ....++|+|++..++++...- +.+..+...|...-+ +....|+.+..-. ++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~-lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT-LP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-HH
Confidence 4899999999999988877653 336899999999999876543 556555555544332 4567999998753 44
Q ss_pred ccccHH-HHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEE
Q 012624 293 WDKKEG-IFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSL 350 (460)
Q Consensus 293 ~~~d~~-~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~ 350 (460)
..+... ..-.++...++ .=.++++.|...-.+.. ......--..++.++..-+|.+
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~-~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRN-KGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES--------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEeccccccccCc-cccccCHHHHHHHhcccCCcee
Confidence 332211 12223333332 23566666644322110 0011111234566777777764
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.06 E-value=0.47 Score=48.13 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC----CCeEEEee
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGNF 269 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg----l~~~~~~~ 269 (460)
.-..+++.+.+...++ ..++|.-+|.|..+..+++.-.. ..++|+|.++.+++.|+++- -++.+...
T Consensus 6 pVll~Evl~~L~~~~g--------giyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~ 76 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPD--------GIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHD 76 (305)
T ss_pred chhHHHHHHhcCcCCC--------CEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeC
Confidence 3456667777765554 68999999999999999987433 78999999999999997751 24455444
Q ss_pred cccCCC-----CCCCCccEEEEcc
Q 012624 270 ISRQLP-----YPSLSFDMVHCAQ 288 (460)
Q Consensus 270 d~~~Lp-----~~~~sFDlVvs~~ 288 (460)
+..++. ...+++|.|+.-.
T Consensus 77 nF~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 77 NFANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred CHHHHHHHHHhcCCCcccEEEEec
Confidence 333321 1335688888754
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.96 E-value=0.63 Score=41.81 Aligned_cols=97 Identities=23% Similarity=0.201 Sum_probs=58.6
Q ss_pred EEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCCC--CCCCCccEEEEcccccccc-----ccH---HHHHHHHHH
Q 012624 243 CVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQCGIIWD-----KKE---GIFLIEADR 306 (460)
Q Consensus 243 ~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~Lp--~~~~sFDlVvs~~~l~~~~-----~d~---~~~L~ei~R 306 (460)
+|.+.|+-++.++.++++ +. ++.+...+-+.+. .+++.+|+|+.+..-+.-. ..+ -.+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 478999999999988776 22 3555544333443 2335899999885444331 122 257899999
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHh
Q 012624 307 LLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKI 346 (460)
Q Consensus 307 vLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~ 346 (460)
+|+|||.+.+..-..-. ....+.+.+..+.+.+
T Consensus 81 lL~~gG~i~iv~Y~GH~-------gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP-------GGKEESEAVEEFLASL 113 (140)
T ss_dssp HEEEEEEEEEEE--STC-------HHHHHHHHHHHHHHTS
T ss_pred hhccCCEEEEEEeCCCC-------CCHHHHHHHHHHHHhC
Confidence 99999999998754311 4456666677776653
No 260
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.64 E-value=1.2 Score=48.17 Aligned_cols=119 Identities=23% Similarity=0.246 Sum_probs=77.3
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhcc---CceeEEEEeeCCHHHHHHHHHc----CCC--eE
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLALER----GLP--AM 265 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~---~~~~~v~giD~s~~~l~~A~~r----gl~--~~ 265 (460)
...+.+.+.+..... .+|.|-.||+|++.....+.- .....++|.|++......|+-. |+. +.
T Consensus 173 ~v~~liv~~l~~~~~--------~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 173 EVSELIVELLDPEPR--------NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred HHHHHHHHHcCCCCC--------CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 456666666665333 589999999998876655441 1126789999999999888765 444 34
Q ss_pred EEeecccCCCC-----CCCCccEEEEcccc--cccc---------------------ccH-HHHHHHHHHhcCCCcEEEE
Q 012624 266 IGNFISRQLPY-----PSLSFDMVHCAQCG--IIWD---------------------KKE-GIFLIEADRLLKPGGYFVL 316 (460)
Q Consensus 266 ~~~~d~~~Lp~-----~~~sFDlVvs~~~l--~~~~---------------------~d~-~~~L~ei~RvLkPGG~lvl 316 (460)
+...|+..-|. ..+.||.|+++--. ..|. ... ..+++.+...|+|||+..+
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 44444433332 33679999986211 1121 011 3578999999999998877
Q ss_pred EeCCC
Q 012624 317 TSPES 321 (460)
Q Consensus 317 ~~~~~ 321 (460)
..+..
T Consensus 325 vl~~g 329 (489)
T COG0286 325 VLPDG 329 (489)
T ss_pred EecCC
Confidence 77654
No 261
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=92.62 E-value=3.1 Score=43.43 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=63.3
Q ss_pred CeEEEeCCCCch----HHHHHHhc--cCceeEEEEeeC----CHHHHH--------HHHHcCCCeEEEeecccC------
Q 012624 218 QSVLDVGCGFGS----FGAHLVSL--KLMAVCVAVYEA----TGSQVQ--------LALERGLPAMIGNFISRQ------ 273 (460)
Q Consensus 218 ~~VLDIGCGtG~----~a~~La~~--~~~~~~v~giD~----s~~~l~--------~A~~rgl~~~~~~~d~~~------ 273 (460)
-.|+|+|.|.|. +...|+.+ +++..++++++. +...++ +|+..|+++++.......
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 579999999995 44555554 567789999998 555544 555559998887642222
Q ss_pred --CCCCCCCccEEEEccccccccc------cHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 274 --LPYPSLSFDMVHCAQCGIIWDK------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 274 --Lp~~~~sFDlVvs~~~l~~~~~------d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
+...++..=+|.|.+.+++..+ ++...+-...|-|+|.- +++.+...+.
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~ea~~ 248 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQEADH 248 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeecCCC
Confidence 2222333334445554555542 22334556677899984 4455554443
No 262
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.23 E-value=0.39 Score=45.94 Aligned_cols=101 Identities=13% Similarity=-0.021 Sum_probs=52.5
Q ss_pred CeEEEeCCCCchHHHHHHhc---cCceeEEEEeeCCHHHHH-HHHHc---CCCeEEEeecccCCC-------C-CCCCcc
Q 012624 218 QSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQ-LALER---GLPAMIGNFISRQLP-------Y-PSLSFD 282 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~---~~~~~~v~giD~s~~~l~-~A~~r---gl~~~~~~~d~~~Lp-------~-~~~sFD 282 (460)
+.|+|+|.-.|.-+..+++. -....+|+|+|+.-.... .+.+. .-.+.+..+|..+.. . ....-.
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 78999999998877766553 213478999999543322 22221 245666666543321 1 112233
Q ss_pred EEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 283 MVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 283 lVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+|+- . ..|..++.-..|+....+++||+++++.|..
T Consensus 114 lVil-D-s~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 114 LVIL-D-SSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEE-S-S----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred EEEE-C-CCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 4443 2 3455467667888899999999999998764
No 263
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.92 E-value=1.6 Score=45.25 Aligned_cols=100 Identities=21% Similarity=0.145 Sum_probs=65.8
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-CCCeEEEeecccC-----C-CC-CCCCccEEEEcc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQ-----L-PY-PSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-gl~~~~~~~d~~~-----L-p~-~~~sFDlVvs~~ 288 (460)
.+||.+|+|. |..+..+++.... ..++++|.+++..+.+++. +. .+......+ + .+ ..+.+|+|+-.-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~--~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGA--ETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCc--EEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 6899999987 8888888876321 3588999999999999887 33 222211111 1 11 234699998752
Q ss_pred ccc--------------cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 289 CGI--------------IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 289 ~l~--------------~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
... +-..+....+.++.+.|+|||.+++....
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCC
Confidence 100 00123355889999999999999988653
No 264
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.81 E-value=0.93 Score=46.58 Aligned_cols=106 Identities=22% Similarity=0.179 Sum_probs=54.2
Q ss_pred CCeEEEeCCCCchHHHHHHhc---------------cCceeEEEEeeCCHHHHH-HHH---------HcCCCeE-EEe-e
Q 012624 217 VQSVLDVGCGFGSFGAHLVSL---------------KLMAVCVAVYEATGSQVQ-LAL---------ERGLPAM-IGN-F 269 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~---------------~~~~~~v~giD~s~~~l~-~A~---------~rgl~~~-~~~-~ 269 (460)
.-+|+|+||..|..+..+.+. .....++.--|.-.+--. ..+ ....++- .+. +
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 468999999999988777653 112356666676432111 000 0111221 111 1
Q ss_pred cccCCCCCCCCccEEEEccccccccc-------c--------------------------------HHHHHHHHHHhcCC
Q 012624 270 ISRQLPYPSLSFDMVHCAQCGIIWDK-------K--------------------------------EGIFLIEADRLLKP 310 (460)
Q Consensus 270 d~~~Lp~~~~sFDlVvs~~~l~~~~~-------d--------------------------------~~~~L~ei~RvLkP 310 (460)
....--||+++.|+++++. .+||.. + ...+|+-=.+-|+|
T Consensus 97 SFy~rLfP~~Svh~~~Ss~-alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSY-ALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp -TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred hhhhccCCCCceEEEEEec-hhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 2222237899999999997 567721 1 01123333456899
Q ss_pred CcEEEEEeCCCCC
Q 012624 311 GGYFVLTSPESKP 323 (460)
Q Consensus 311 GG~lvl~~~~~~~ 323 (460)
||++++.-.....
T Consensus 176 GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 176 GGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEE-ST
T ss_pred CcEEEEEEeeccc
Confidence 9999999876655
No 265
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.67 E-value=1.5 Score=43.07 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=60.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHH--HHHHc--------CCCeEEEeec---ccCCCCCCCC-ccE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ--LALER--------GLPAMIGNFI---SRQLPYPSLS-FDM 283 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~--~A~~r--------gl~~~~~~~d---~~~Lp~~~~s-FDl 283 (460)
.+||++|.|+|..+...+.... ..+.-.|....... ..++. |..+.+..++ .....+-... ||+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 6799999999977777766432 45666676544332 22111 2223322221 1111111122 999
Q ss_pred EEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 284 VHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 284 Vvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
|+++.|+++- ...+.++.-+...|-.+|.+++..+-
T Consensus 166 ilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 166 ILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEec
Confidence 9999987665 45556888888899889977777663
No 266
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.29 E-value=0.15 Score=46.73 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred CCCccEEEEcccccccc-------cc---HHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 278 SLSFDMVHCAQCGIIWD-------KK---EGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 278 ~~sFDlVvs~~~l~~~~-------~d---~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
.++||.+.|..++.|.- -| ..+.+.++.++|||||.+++..|....
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 46899999987776661 11 135899999999999999999997643
No 267
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.13 E-value=1.7 Score=43.30 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=62.2
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----CCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~l~ 291 (460)
.+||..|+| .|..+..+++... ..++.++.++...+.+++.+....+..-+ ... ....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC--
Confidence 678888876 4777777777632 46888899999999887777644332111 010 123467998885421
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
....+.++.+.|++||.++....
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEECC
Confidence 12478889999999999998754
No 268
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.01 E-value=3.7 Score=40.86 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=74.0
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCC--CCCccEEEEccccccc---
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP--SLSFDMVHCAQCGIIW--- 293 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~--~~sFDlVvs~~~l~~~--- 293 (460)
+|+|+-||.|.+...+.+.|. ..+.++|+++..++..+.+.... +...|+..+... ...+|+++...--..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 589999999999999888874 45788999999888776553222 333445544321 3569999986421211
Q ss_pred -----cccH-HHHHHHHH---HhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 294 -----DKKE-GIFLIEAD---RLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 294 -----~~d~-~~~L~ei~---RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
.++. ..++.++. +.++|- +++.+........ .....+..+....+++++.+...
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~----~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH----DNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc----CchHHHHHHHHHHHhCCcEEEEE
Confidence 1222 22444444 445665 4555554433211 12344556666667777776444
No 269
>PHA01634 hypothetical protein
Probab=90.19 E-value=1.5 Score=38.85 Aligned_cols=68 Identities=15% Similarity=0.011 Sum_probs=48.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEe--ecccCCCCCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGN--FISRQLPYPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~--~d~~~Lp~~~~sFDlVvs 286 (460)
.++|+|||.+.|..+.+++-+|. -.|+++++++...+..++.--.+.+.+ ....+++-.-+.||+.++
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 37999999999999999999886 589999999999998876411111111 112345544467888775
No 270
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=89.85 E-value=1.8 Score=45.19 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=77.7
Q ss_pred ccccccccccchhHHHHHHHHHHccCCCchhhc--cCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH
Q 012624 182 FHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQ--AGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (460)
Q Consensus 182 F~~~~~~~fd~~~~~~~~i~~~l~~~~~~~~~~--~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~ 259 (460)
+...+..+|+.....-+.+.-.+-. ....... ...-+|||.=+|+|.=+.+++.+......|+..|++++.++..++
T Consensus 14 ~~~~~~vFYNP~~~~nRDlsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~ 92 (377)
T PF02005_consen 14 IPKKAPVFYNPVMEFNRDLSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKR 92 (377)
T ss_dssp TTTTSSSS--GGGHHHHHHHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHH
T ss_pred cCCCCCcccCcchhcccceeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHH
Confidence 4443566777666555554433310 0000000 112589999999999998888873334688999999999988766
Q ss_pred c----CCC---eEEEeecccCCC-CCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 260 R----GLP---AMIGNFISRQLP-YPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 260 r----gl~---~~~~~~d~~~Lp-~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+ ++. +.+...|+..+- ...+.||+|-.- .+ ..+..+|..+.+.+|.||++.++....
T Consensus 93 N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD----Pf-GSp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 93 NLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD----PF-GSPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp HHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------S-S--HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred hHhhccccCceEEEehhhHHHHhhhccccCCEEEeC----CC-CCccHhHHHHHHHhhcCCEEEEecccc
Confidence 5 443 344444444432 246789999753 33 234458999999999999999997643
No 271
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.85 E-value=0.2 Score=43.01 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=27.0
Q ss_pred CccEEEEcccccccc------ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 280 SFDMVHCAQCGIIWD------KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 280 sFDlVvs~~~l~~~~------~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.||+|.|..+ .-|. +....+++.+++.|+|||.|++.-.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4899999753 3331 2234689999999999999998754
No 272
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.44 E-value=2.3 Score=43.22 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=60.3
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEee--cccCCCCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNF--ISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~--d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
.+||=+|+| .|.++..+++. |. ..++++|.+++.++.+++.|....+... +..++....+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 678888875 35566666665 32 3678899999999999888765433211 11111111235898886521
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+....+.|++||.+++...
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2367788899999999998875
No 273
>PRK13699 putative methylase; Provisional
Probab=89.20 E-value=0.98 Score=43.80 Aligned_cols=51 Identities=14% Similarity=0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeecceeeeeeccC
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVD 365 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~~~~iw~k~~~ 365 (460)
...+.|++|+|||||.+++.... + . ...+....++.+|.+ .+..+|.|...
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~---~-------~---~~~~~~al~~~GF~l----~~~IiW~K~~~ 102 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGW---N-------R---VDRFMAAWKNAGFSV----VGHLVFTKNYT 102 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEecc---c-------c---HHHHHHHHHHCCCEE----eeEEEEECCCC
Confidence 35789999999999998864321 1 0 112233446677775 33458888753
No 274
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.05 E-value=3.7 Score=43.24 Aligned_cols=108 Identities=22% Similarity=0.372 Sum_probs=69.0
Q ss_pred cCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCCeE-EEeecccCCC---CCCCCccEEEE
Q 012624 215 AGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM-IGNFISRQLP---YPSLSFDMVHC 286 (460)
Q Consensus 215 ~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~~~-~~~~d~~~Lp---~~~~sFDlVvs 286 (460)
+...+|||..+..|.=+.+++..-.....+.+.|.+..-+....+. |+... ....|...+| ++. +||-|..
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 3458999999999976666665422235688899888776654433 55433 3445555544 444 8999974
Q ss_pred ----ccccccc-------cc---------c-HHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 287 ----AQCGIIW-------DK---------K-EGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 287 ----~~~l~~~-------~~---------d-~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
+...... .. . ..++|.....+++|||+|+.++-....
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 3211111 00 1 125788889999999999999875543
No 275
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.83 E-value=0.83 Score=39.20 Aligned_cols=86 Identities=24% Similarity=0.262 Sum_probs=61.7
Q ss_pred CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----C-CCCCCccEEEEccccccccccHHH
Q 012624 226 GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQCGIIWDKKEGI 299 (460)
Q Consensus 226 GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p-~~~~sFDlVvs~~~l~~~~~d~~~ 299 (460)
|.|.++..+++... .+++++|.++.-.+.+++.|....+..- ..++ . ...+.+|+|+-.-. -..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~-~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYS-DDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETT-TSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccccccccc-ccccccccccccccccceEEEEecC-------cHH
Confidence 45788888888743 7899999999999999988844443321 1110 1 23357999986521 134
Q ss_pred HHHHHHHhcCCCcEEEEEeCCC
Q 012624 300 FLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 300 ~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.+.+...+|+|||.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999998765
No 276
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.69 E-value=0.57 Score=45.46 Aligned_cols=97 Identities=21% Similarity=0.093 Sum_probs=58.1
Q ss_pred CCeEEEeCCCCchHHHHHHhccCc--------eeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC--------CCCCC
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLM--------AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLS 280 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~--------~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp--------~~~~s 280 (460)
..+|+|+....|+|+..|.++-.. ...++++|+-+- | .-..+...++|+.... |....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M----a--PI~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM----A--PIEGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC----C--ccCceEEeecccCCHhHHHHHHHHhCCCC
Confidence 578999999999999999876211 112777776431 1 0011233344443322 55568
Q ss_pred ccEEEEcc-----ccccccccHH-----HHHHHHHHhcCCCcEEEEEeC
Q 012624 281 FDMVHCAQ-----CGIIWDKKEG-----IFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 281 FDlVvs~~-----~l~~~~~d~~-----~~L~ei~RvLkPGG~lvl~~~ 319 (460)
-|+|+|-. .+|.+.+..+ .+|.-...+|||||.|+---.
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 99999952 1233322221 346667789999999985443
No 277
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=88.32 E-value=0.39 Score=47.90 Aligned_cols=128 Identities=16% Similarity=0.250 Sum_probs=69.9
Q ss_pred ccccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeE
Q 012624 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAM 265 (460)
Q Consensus 186 ~~~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~ 265 (460)
+...+.......+.+.+.+. .. ......+|||+|||.|.-+......+. .++...|.+...++...-.++.+.
T Consensus 91 g~k~wecS~dl~~~l~~e~~--~~---~~~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~ 163 (282)
T KOG2920|consen 91 GLKLWECSVDLLPYLKEEIG--AQ---MSFSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVN 163 (282)
T ss_pred ceEEeecHHHHHHHHHHHhh--hh---eEecCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecc
Confidence 33444444455555554441 11 111237999999999998888877753 566777887776632111110000
Q ss_pred ------------EEeeccc---CCCC-CCC--CccEEEEccccccccccHHHH-HHHHHHhcCCCcEEEEEeCCC
Q 012624 266 ------------IGNFISR---QLPY-PSL--SFDMVHCAQCGIIWDKKEGIF-LIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 266 ------------~~~~d~~---~Lp~-~~~--sFDlVvs~~~l~~~~~d~~~~-L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+...... ++-+ ..+ .||+|.++..++... ....+ ......++++.|.+++..-..
T Consensus 164 ~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~-~~~~~~~~~r~~l~~~D~~~~~aAK~~ 237 (282)
T KOG2920|consen 164 SHAGVEEKENHKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSID-SLAVLYLLHRPCLLKTDGVFYVAAKKL 237 (282)
T ss_pred hhhhhhhhhcccceeccccccccchhhhccccchhhhhhhhhhhCcc-hhhhhHhhhhhhcCCccchhhhhhHhh
Confidence 1111011 1111 112 789998887655553 33333 556667788899888776543
No 278
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=1.6 Score=47.16 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhc---cCceeEEEEeeCCHHHHHHHHHc-----CCCeE
Q 012624 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALER-----GLPAM 265 (460)
Q Consensus 194 ~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~---~~~~~~v~giD~s~~~l~~A~~r-----gl~~~ 265 (460)
..|.+.+.+.+..... .-..+....|+=+|.|-|-+.....+. .....++++++-++..+...+.+ .-.+.
T Consensus 346 ~~Yq~Ai~~AL~Drvp-d~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vt 424 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVP-DESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVT 424 (649)
T ss_pred HHHHHHHHHHHHhhCc-ccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeE
Confidence 3455555555533211 001112457888999999877655443 22347899999999887665544 33566
Q ss_pred EEeecccCCCCCCCCccEEEEccccccccccH--HHHHHHHHHhcCCCcEEEEE
Q 012624 266 IGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE--GIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 266 ~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~ 317 (460)
+...|...++-+....|++++-. +-.+.++. .+-|.-+-+.|||.|..+=.
T Consensus 425 ii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 425 IISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 77777888875568899999853 33443221 35899999999999876533
No 279
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=87.92 E-value=1.3 Score=44.53 Aligned_cols=102 Identities=13% Similarity=0.032 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEeecccCC--CCCCCCccEE
Q 012624 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQL--PYPSLSFDMV 284 (460)
Q Consensus 216 ~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---------gl~~~~~~~d~~~L--p~~~~sFDlV 284 (460)
.+++||=||.|.|.+.+...++ ....++.-+|+....++..++- +.++.+..+|.-.+ ..+.++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3579999999999999888877 3445677788888887766543 23333333332211 1347899999
Q ss_pred EEcccccccccc----HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 285 vs~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.-. .-...+. ...++..+.+.||+||+++...-
T Consensus 200 i~ds-sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDS-SDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEec-CCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 9742 2222211 12467889999999999998874
No 280
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=87.86 E-value=0.94 Score=48.12 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCeEEEeCCCCc--hHHHHHHhccCceeEEEEeeCCHHHHHHHHHc--C-----CCeEEE-eecccCCCCC-CCCccEEE
Q 012624 217 VQSVLDVGCGFG--SFGAHLVSLKLMAVCVAVYEATGSQVQLALER--G-----LPAMIG-NFISRQLPYP-SLSFDMVH 285 (460)
Q Consensus 217 ~~~VLDIGCGtG--~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r--g-----l~~~~~-~~d~~~Lp~~-~~sFDlVv 285 (460)
++.++|+|.|.| .++....-++ ....+..+|.+.+|....... + -...-. .+--..+|.. .+.||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 367888887765 4555555543 235678899999998766432 1 111111 1222345543 44599999
Q ss_pred EccccccccccHH--HHHHHH-HHhcCCCcEEEEEeCCCC
Q 012624 286 CAQCGIIWDKKEG--IFLIEA-DRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 286 s~~~l~~~~~d~~--~~L~ei-~RvLkPGG~lvl~~~~~~ 322 (460)
+++.+++...... ...+++ .+..++||++++.+....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9998888753222 234444 456799999999988654
No 281
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.62 E-value=6.9 Score=38.47 Aligned_cols=131 Identities=19% Similarity=0.226 Sum_probs=77.1
Q ss_pred cccccchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCH----HHHHHHHHc-C
Q 012624 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG----SQVQLALER-G 261 (460)
Q Consensus 187 ~~~fd~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~----~~l~~A~~r-g 261 (460)
.-.|.-...+...++..+--.....+. +...+||=+|+++|....+..+--...--|++++.|+ ..+..|++| +
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGvdnihi-kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtN 206 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGVDNIHI-KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTN 206 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCccceee-cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCC
Confidence 334444455555555544333221222 2237999999999999988888733445678888875 456677666 3
Q ss_pred CCeEEEeecccCCCC----CCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Q 012624 262 LPAMIGNFISRQLPY----PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPR 324 (460)
Q Consensus 262 l~~~~~~~d~~~Lp~----~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~ 324 (460)
+-..+.++ +.|. .-.-.|+|++-- .-++....+..+..-.||+||.|+++-......
T Consensus 207 iiPIiEDA---rhP~KYRmlVgmVDvIFaDv---aqpdq~RivaLNA~~FLk~gGhfvisikancid 267 (317)
T KOG1596|consen 207 IIPIIEDA---RHPAKYRMLVGMVDVIFADV---AQPDQARIVALNAQYFLKNGGHFVISIKANCID 267 (317)
T ss_pred ceeeeccC---CCchheeeeeeeEEEEeccC---CCchhhhhhhhhhhhhhccCCeEEEEEeccccc
Confidence 33333332 2231 123466666531 111223346677888999999999998765444
No 282
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.62 E-value=4.3 Score=44.18 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeeccc---------CCC----------
Q 012624 216 GVQSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR---------QLP---------- 275 (460)
Q Consensus 216 ~~~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~---------~Lp---------- 275 (460)
...+|+=+|+|. |..+...++.- +..|+++|.+++-++.+++.|..+...+.... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 358999999997 55555555542 24799999999999999887766432221100 010
Q ss_pred CCC--CCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 276 YPS--LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 276 ~~~--~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+.+ +.+|+|+..- ...-.+.+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 4699999874 232222343345999999999999987764
No 283
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.37 E-value=8.1 Score=35.62 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=74.2
Q ss_pred eCCCCchHHHHHHhccCceeEEE--EeeCCHHHHH----------HHHHcCCCeEEEeecccCCC----CCCCCccEEEE
Q 012624 223 VGCGFGSFGAHLVSLKLMAVCVA--VYEATGSQVQ----------LALERGLPAMIGNFISRQLP----YPSLSFDMVHC 286 (460)
Q Consensus 223 IGCGtG~~a~~La~~~~~~~~v~--giD~s~~~l~----------~A~~rgl~~~~~~~d~~~Lp----~~~~sFDlVvs 286 (460)
||=|.=+|+..|++.......++ ..|..++..+ ..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 66777788888888732123444 4465544333 223446655544 3555554 35688999999
Q ss_pred cccccccc-----cc-------HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 287 AQCGIIWD-----KK-------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 287 ~~~l~~~~-----~d-------~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
++--.... .+ ...+++.+.++|+++|.+.++-..... ...|. ++.++++.++.+...
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~-i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWN-IEELAAEAGLVLVRK 150 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Ccccc-HHHHHHhcCCEEEEE
Confidence 86333210 01 124788899999999999998764422 24575 457888888777544
No 284
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.30 E-value=18 Score=34.97 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=79.1
Q ss_pred HHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEee
Q 012624 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNF 269 (460)
Q Consensus 196 ~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl~--~~~~~~ 269 (460)
....+++.+... .++.||||--|.+..+|.+.+.. ..+++.|+++.-++.|.+. ++. +....+
T Consensus 6 RL~~va~~V~~~----------~~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~ 74 (226)
T COG2384 6 RLTTVANLVKQG----------ARIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLG 74 (226)
T ss_pred HHHHHHHHHHcC----------CceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEecc
Confidence 445566666543 34999999999999999998754 5677889999988888654 322 233333
Q ss_pred cccCCCC-CCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCe
Q 012624 270 ISRQLPY-PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (460)
Q Consensus 270 d~~~Lp~-~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 348 (460)
|.. .++ ++..+|+|+...+ .- .-....|.+-..-|+-=-++++ .|+... ..++.+.....|
T Consensus 75 dgl-~~l~~~d~~d~ivIAGM--GG-~lI~~ILee~~~~l~~~~rlIL-QPn~~~-------------~~LR~~L~~~~~ 136 (226)
T COG2384 75 DGL-AVLELEDEIDVIVIAGM--GG-TLIREILEEGKEKLKGVERLIL-QPNIHT-------------YELREWLSANSY 136 (226)
T ss_pred CCc-cccCccCCcCEEEEeCC--cH-HHHHHHHHHhhhhhcCcceEEE-CCCCCH-------------HHHHHHHHhCCc
Confidence 331 122 3457999988642 21 1123466666666653323333 332211 235666778888
Q ss_pred EEEeee
Q 012624 349 SLIAQQ 354 (460)
Q Consensus 349 ~~~~~~ 354 (460)
++.++.
T Consensus 137 ~I~~E~ 142 (226)
T COG2384 137 EIKAET 142 (226)
T ss_pred eeeeee
Confidence 887764
No 285
>KOG2730 consensus Methylase [General function prediction only]
Probab=86.05 E-value=0.84 Score=44.10 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=48.8
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEeecccCC----CCCCCCccEEEEc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQL----PYPSLSFDMVHCA 287 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r----gl--~~~~~~~d~~~L----p~~~~sFDlVvs~ 287 (460)
..|+|.-||.|..+..++.++ ..|+++|+++.-+..|+.+ |+ ++.+.++|..++ -+....+|+|..+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 679999999999999999887 5788999999999998766 44 355666664432 2333345566544
No 286
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=84.77 E-value=5.2 Score=40.72 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=41.9
Q ss_pred HHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 195 ~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
-+.+++.+.+...++ ...+|.--|.|..+..+++.... ..++|+|-++.+++.|+++
T Consensus 7 Vll~Evl~~L~~~~~--------g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 7 VLLKEVLEALNPKPG--------GIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER 63 (310)
T ss_dssp TTHHHHHHHHT--TT---------EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC
T ss_pred ccHHHHHHhhCcCCC--------ceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH
Confidence 355667777766554 78999999999999999988544 7999999999999999765
No 287
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=84.73 E-value=5.2 Score=40.50 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC----CCeEEE
Q 012624 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIG 267 (460)
Q Consensus 192 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg----l~~~~~ 267 (460)
...-+.++..+.+...++ ...+|.--|.|..+..++++......++++|-++..++.|+++- -++.+.
T Consensus 7 HipVLl~E~i~~L~~~~~--------giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v 78 (314)
T COG0275 7 HIPVLLNEVVELLAPKPD--------GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLV 78 (314)
T ss_pred ccchHHHHHHHhcccCCC--------cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEE
Confidence 344567777777777665 78999999999999999999766677999999999999998862 234444
Q ss_pred eecccCCC-----CCCCCccEEEEc
Q 012624 268 NFISRQLP-----YPSLSFDMVHCA 287 (460)
Q Consensus 268 ~~d~~~Lp-----~~~~sFDlVvs~ 287 (460)
......+. ...+.+|.|+.-
T Consensus 79 ~~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 79 HGNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred eCcHHHHHHHHHhcCCCceeEEEEe
Confidence 33222221 223567777664
No 288
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.28 E-value=8.8 Score=36.42 Aligned_cols=94 Identities=30% Similarity=0.281 Sum_probs=61.0
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----CCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~l~ 291 (460)
.+||..|+|. |..+..+++... ..+++++.++...+.+++.+....+...+ ... ....+.+|+|+....
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~-- 210 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVG-- 210 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCC--
Confidence 7899999985 666666666532 57888899988888887665332221110 000 112457999986531
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
. ...+..+.+.|+++|.++......
T Consensus 211 ----~-~~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 211 ----G-PETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ----C-HHHHHHHHHhcccCCEEEEEccCC
Confidence 1 135677888999999999876543
No 289
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.23 E-value=11 Score=38.21 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=58.8
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+||=.|+| .|..+..+++.. ...++.++.+++-.+.+++.|....+.. ... ..+.+|+++-... .
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~------~ 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP------A 233 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC------c
Confidence 688888865 344556666652 2468888999988999988886543321 111 1245887664321 1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.+..+.|++||.+++...
T Consensus 234 -~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -HHHHHHHHHhhCCCcEEEEEec
Confidence 2368888999999999998775
No 290
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=84.02 E-value=2.3 Score=45.00 Aligned_cols=66 Identities=27% Similarity=0.253 Sum_probs=47.8
Q ss_pred cchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 191 DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 191 d~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
+....|+..|...+..... -...+..-|||||.|||.++...+..|. -.+++++.-..|.+.|++-
T Consensus 43 dRNiky~~gi~~tIte~kh--~~~~gkv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 43 DRNIKYRLGIEKTITEPKH--VLDIGKVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKI 108 (636)
T ss_pred cccHHHHHHHHHHhcccce--eccCceEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHH
Confidence 3445677777777765443 1111224699999999999988888774 4689999999999988754
No 291
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=83.96 E-value=1.4 Score=37.91 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeC
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEA 249 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~ 249 (460)
....+|||||.|.+.--|.+.|..+ .|+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G---~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPG---WGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCc---ccccc
Confidence 3579999999999999999988644 45564
No 292
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=83.22 E-value=1.7 Score=41.13 Aligned_cols=99 Identities=21% Similarity=0.123 Sum_probs=59.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC--------CCCCCCccEEEEcc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL--------PYPSLSFDMVHCAQ 288 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L--------p~~~~sFDlVvs~~ 288 (460)
..+|||+||..|+|+.-..++-.+...+.|+|+-.- .-.+|..+... .|..+- ..++...|+|++-.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----~p~~Ga~~i~~-~dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----EPPEGATIIQG-NDVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----cCCCCcccccc-cccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 379999999999999988877434456788887431 11223322221 111110 13578899999853
Q ss_pred cccccc----ccHH-------HHHHHHHHhcCCCcEEEEEeCCC
Q 012624 289 CGIIWD----KKEG-------IFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 289 ~l~~~~----~d~~-------~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
...-. .|.. .++.-....++|+|.|+.-.+..
T Consensus 145 -apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 145 -APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred -CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 22221 1221 23334455688999999988754
No 293
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=82.22 E-value=15 Score=36.50 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=58.8
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+||-+|+| .|..+..+++.. ...++.++.+++..+.+++.+....+...+.....-..+.+|+++... . .
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~----~ 235 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--V----S 235 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--C----c
Confidence 678888886 666666666652 246888888999888886666433332111000000124689888642 1 1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.++.+.|+++|.++....
T Consensus 236 -~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 236 -GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHHHhcccCCEEEEECC
Confidence 2367888999999999998754
No 294
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.79 E-value=19 Score=35.88 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=60.5
Q ss_pred CeEEEeC--CCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----CCCCCCccEEEEcccc
Q 012624 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIG--CGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~l 290 (460)
.+||=.| .|.|..+..+++... ..+++++.+++..+.+++.|....+..-+...+ ....+.+|+|+-.-.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 6788787 357888888887632 467888889988898887776443321111011 012346898885421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.+..+.|++||.++....
T Consensus 217 -------~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 -------GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -------HHHHHHHHHHhCcCcEEEEecc
Confidence 1246788999999999997754
No 295
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=81.54 E-value=11 Score=37.62 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=58.5
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc---cCCCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQLPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~---~~Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+||-.|+|. |..+..+++. |. ..+++++.++...+.+++.+....+ +... ..+....+.+|+|+....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g--- 240 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASG--- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCC---
Confidence 6788888764 5566666665 32 2678889888888877776653322 1111 112212245899986531
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|+++|.++....
T Consensus 241 ---~-~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 ---A-PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ---C-HHHHHHHHHHHhcCCEEEEEec
Confidence 1 2367889999999999997654
No 296
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.51 E-value=12 Score=38.38 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=65.2
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC---------CCCCCCccEEEEc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL---------PYPSLSFDMVHCA 287 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L---------p~~~~sFDlVvs~ 287 (460)
.+||=+|+|. |..+...++. .-..+|+.+|.++.-++.|++-|............. -+....||+.+-.
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 7999999996 4444444443 334689999999999999998776655433221101 1233458888865
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 288 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
. .. +..++.....+|+||.+++.+....
T Consensus 250 s-G~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 250 S-GA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred c-Cc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 3 12 2356667788999999988887653
No 297
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.33 E-value=4 Score=39.85 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=57.6
Q ss_pred cchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----CCC--
Q 012624 191 DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLP-- 263 (460)
Q Consensus 191 d~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----gl~-- 263 (460)
.+.+.|++.+++++....+. .. .+.-++||||.|.--.-..+--+ -...+++|.|+++..++.|+.. ++.
T Consensus 55 PgRAdYih~laDLL~s~~g~-~~-~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~ 131 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQ-IP-GKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGLERA 131 (292)
T ss_pred CChhHHHHHHHHHHHhcCCC-CC-cCceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCcchhhh
Confidence 56788999999999766551 11 33468999998864332222211 1237899999999888877643 221
Q ss_pred eEEEe-ecc----cCCCCCCCCccEEEEccc
Q 012624 264 AMIGN-FIS----RQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 264 ~~~~~-~d~----~~Lp~~~~sFDlVvs~~~ 289 (460)
+.+.. -+. ..+--.++.||++.|+--
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecCCC
Confidence 11110 011 111123578999999853
No 298
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=81.13 E-value=24 Score=34.93 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=63.9
Q ss_pred CCeEEEeCCCCchHHHHHHhc----cCceeEEEEeeCCHHHHHHHHHc------CCCeEEEeecc----cCCCCCCCCcc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSL----KLMAVCVAVYEATGSQVQLALER------GLPAMIGNFIS----RQLPYPSLSFD 282 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~----~~~~~~v~giD~s~~~l~~A~~r------gl~~~~~~~d~----~~Lp~~~~sFD 282 (460)
..+.+|+|.|+..=++.|.+. +. ...++++|+|+..++...+. ++++.-..++. ..+| .+.=-
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 378999999999877776654 43 36889999999887643222 44443333322 1222 22222
Q ss_pred E-EEEccccccccccH-HHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 283 M-VHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 283 l-Vvs~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
+ ++....+-++.++. ..+|.++...|+||-+|++..-..+
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 2 22222344554443 4689999999999999999765443
No 299
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=80.67 E-value=9 Score=36.47 Aligned_cols=106 Identities=11% Similarity=-0.021 Sum_probs=66.3
Q ss_pred CCeEEEeCCCCchHHHHHHhc---cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC-------CCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~---~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp-------~~~~sFDlVvs 286 (460)
++.|+|+|.-.|..+..+++. .....++.++|++-...+-+..+-..+.+..++..+.. ..++.--+.+|
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfvi 149 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVI 149 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence 378999999888776666653 22447899999988776655444445566655433221 11121223333
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
-.. .|..+..-+.|+-..++|.-|-++++.+...+.
T Consensus 150 lDs-dHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 150 LDS-DHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred ecC-CchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 333 333344445677788899999999999887654
No 300
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.88 E-value=18 Score=36.01 Aligned_cols=93 Identities=25% Similarity=0.235 Sum_probs=58.6
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeecccCC----CCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFISRQL----PYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L----p~~~~sFDlVvs~~~l~ 291 (460)
.+||-+|+| .|..+..+++... .. ++.++.+++..+.+++.+....+. .+.... ....+.+|+++....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKLGATETVD-PSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCCeEEec-CCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 688888865 2555555665522 33 677888888888887777542222 111110 113456999986521
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
....+.++.+.|+++|.++.....
T Consensus 236 -----~~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 236 -----VPKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred -----ChHHHHHHHHHHhcCCEEEEEecC
Confidence 124778889999999999877653
No 301
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=79.22 E-value=5.6 Score=41.46 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH
Q 012624 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258 (460)
Q Consensus 216 ~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~ 258 (460)
+...|+|+|.|.|.++..|.-.. ..+|.++|.|....+.|+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 35789999999999999987663 278999999976655543
No 302
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.95 E-value=10 Score=38.47 Aligned_cols=92 Identities=14% Similarity=0.067 Sum_probs=56.2
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+||=+|+|. |.++..++++-.....++++|.+++-++.+++.+.. .. ...+. .+..+|+|+-.-. . ..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~--~~---~~~~~-~~~g~d~viD~~G--~--~~ 234 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET--YL---IDDIP-EDLAVDHAFECVG--G--RG 234 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce--ee---hhhhh-hccCCcEEEECCC--C--Cc
Confidence 6899899763 445556555311124688889999888888653321 11 11111 1124898885421 1 11
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
....+.+..++|++||.+++...
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 23478889999999999998764
No 303
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=78.93 E-value=6.4 Score=38.48 Aligned_cols=81 Identities=30% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHH---HHc-----CC------C
Q 012624 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA---LER-----GL------P 263 (460)
Q Consensus 198 ~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A---~~r-----gl------~ 263 (460)
+.+++.+..+.+ ...+|||.-+|-|.=+.-++..| .+|+++|-|+.+.... .++ .. +
T Consensus 63 ~~l~kA~Glk~~------~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r 133 (234)
T PF04445_consen 63 DPLAKAVGLKPG------MRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR 133 (234)
T ss_dssp SHHHHHTT-BTT------B---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred cHHHHHhCCCCC------CCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC
Confidence 445555555443 22489999999999998888766 5899999998654322 121 11 3
Q ss_pred eEEEeecccC-CCCCCCCccEEEEc
Q 012624 264 AMIGNFISRQ-LPYPSLSFDMVHCA 287 (460)
Q Consensus 264 ~~~~~~d~~~-Lp~~~~sFDlVvs~ 287 (460)
+.+...|..+ |..++++||+|..-
T Consensus 134 i~l~~~d~~~~L~~~~~s~DVVY~D 158 (234)
T PF04445_consen 134 IQLIHGDALEYLRQPDNSFDVVYFD 158 (234)
T ss_dssp EEEEES-CCCHCCCHSS--SEEEE-
T ss_pred CEEEcCCHHHHHhhcCCCCCEEEEC
Confidence 4455555443 44567899999984
No 304
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.09 E-value=8.2 Score=35.99 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=32.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~ 259 (460)
..|||-=||+|+.+....+.| ...+|+|+++...+.|.+
T Consensus 193 diVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred eeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 789999999999998887776 578999999999998864
No 305
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=77.98 E-value=15 Score=36.51 Aligned_cols=125 Identities=16% Similarity=0.082 Sum_probs=73.0
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC---CCCCCccEEEEccccccc--
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW-- 293 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp---~~~~sFDlVvs~~~l~~~-- 293 (460)
+++|+=||.|.+...|.+.|. ..+.++|+++...+.-+.+.. .....|+..+. ++. .+|+++...--..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEec
Confidence 689999999999999998884 457889999998876655432 44445555553 343 59999875321111
Q ss_pred ------cccHH-HH---HHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeee
Q 012624 294 ------DKKEG-IF---LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (460)
Q Consensus 294 ------~~d~~-~~---L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~ 354 (460)
.+|.. .+ +.++.+.++|-- ++.+...+.... .....+..+....+++++.+...-
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~l~~~----~~~~~~~~i~~~l~~lGY~v~~~v 141 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPGLLSS----KNGEVFKEILEELEELGYNVQWRV 141 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGGGGTG----GGHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHhhccceE--EEecccceeecc----ccccccccccccccccceeehhcc
Confidence 12222 23 344455678843 344443332211 223556677777788888775543
No 306
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=77.89 E-value=74 Score=31.29 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=74.3
Q ss_pred CeEEEeCCCCch-HHHHHHhccCceeEEEEeeCCHHHHHHH----HHcCCCeEEEeeccc-CCCC-CCCCccEEEEcccc
Q 012624 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLPAMIGNFISR-QLPY-PSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGtG~-~a~~La~~~~~~~~v~giD~s~~~l~~A----~~rgl~~~~~~~d~~-~Lp~-~~~sFDlVvs~~~l 290 (460)
++||=+|=+.-. ++..+. +. ..+++.+|+++..+++. .+.|+++.....|.. .+|- -.++||++++-=
T Consensus 46 k~il~lGDDDLtSlA~al~--~~-~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALT--GL-PKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp -EEEEES-TT-HHHHHHHH--T---SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred CEEEEEcCCcHHHHHHHhh--CC-CCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 789999965543 333332 22 26889999999998754 455888777766653 2331 247999999852
Q ss_pred cccc-ccHHHHHHHHHHhcCCCc-EEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEeeecceeeeeeccCccc
Q 012624 291 IIWD-KKEGIFLIEADRLLKPGG-YFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHC 368 (460)
Q Consensus 291 ~~~~-~d~~~~L~ei~RvLkPGG-~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~~~~~~iw~k~~~~~C 368 (460)
.++ +....++.+....||.-| ..+++-... . .....|..++....++++-+...- .-+......+-
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~-~-------~s~~~~~~~Q~~l~~~gl~i~dii---~~Fn~Y~ga~~ 188 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK-E-------ASPDKWLEVQRFLLEMGLVITDII---PDFNRYEGAEI 188 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT-T---------HHHHHHHHHHHHTS--EEEEEE---EEEEEB---S-
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEEEecC-c-------CcHHHHHHHHHHHHHCCcCHHHHH---hhhcccccchh
Confidence 222 334568888888998766 444433211 0 235678888888778887663321 11111111000
Q ss_pred cc-ccccC-CCcccCCCCCCCceeccceeEccCCCC
Q 012624 369 YT-SRKHG-LPLCKEEHDAVPYYHPLVSCISATNSK 402 (460)
Q Consensus 369 ~~-~r~~~-~~L~~ag~~~~awy~pl~~ci~~~~~~ 402 (460)
.. .+... .+... ..+..||......|.-+++.
T Consensus 189 i~~~~~~~~l~v~~--~~~~~~y~s~~~rie~~~~~ 222 (243)
T PF01861_consen 189 IGNTRFWQVLPVKK--RPEKIWYRSTMPRIETVRGP 222 (243)
T ss_dssp GGGSHHHHHSSS------SS---EEEEEEEE--TT-
T ss_pred hcccceeEEecccc--ccccccccceeEEEEEecCc
Confidence 00 01101 11111 22777998888777666543
No 307
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.56 E-value=14 Score=37.86 Aligned_cols=92 Identities=21% Similarity=0.085 Sum_probs=58.3
Q ss_pred CeEEEeCCCC-chHHHHHHhccCcee-EEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~l 290 (460)
.+||=.|+|. |.++..+++.. .. .++++|.+++..+.+++.|....+... ..++ ....+.+|+|+-.-.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~-~~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELGATATVNAG-DPNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcCCceEeCCC-chhHHHHHHHHhCCCCCEEEECCC-
Confidence 5677788753 55666666652 13 578899999999999877764333211 1110 011236898885421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|++||.+++...
T Consensus 269 -----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 1367788899999999998764
No 308
>PRK10742 putative methyltransferase; Provisional
Probab=77.18 E-value=7.5 Score=38.33 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=40.2
Q ss_pred HHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHH
Q 012624 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA 257 (460)
Q Consensus 198 ~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A 257 (460)
+.+++.+..+.+ ...+|||.=+|+|..+..++.+| +.|+++|-++......
T Consensus 76 ~~l~kAvglk~g------~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL 126 (250)
T PRK10742 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALL 126 (250)
T ss_pred cHHHHHhCCCCC------CCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHH
Confidence 567777776665 11389999999999999999997 5699999998765543
No 309
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.62 E-value=16 Score=37.21 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=58.4
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeC---CHHHHHHHHHcCCCeEEEeecccCC--CCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEA---TGSQVQLALERGLPAMIGNFISRQL--PYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~---s~~~l~~A~~rgl~~~~~~~d~~~L--p~~~~sFDlVvs~~~l~ 291 (460)
.+||=+|+|. |.++..+++... ..+++++. ++.-.+.+++.|... + +...+++ ....+.||+|+-.-.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~~-v-~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGATY-V-NSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEE-e-cCCccchhhhhhcCCCCEEEECcC--
Confidence 6788888763 666777776522 36777775 677888887777643 2 1111110 001246898886531
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
. ...+.+..+.|++||.+++....
T Consensus 248 ----~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 ----V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ----C-HHHHHHHHHHccCCcEEEEEecC
Confidence 1 13678889999999999887653
No 310
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=76.57 E-value=17 Score=37.02 Aligned_cols=93 Identities=19% Similarity=0.115 Sum_probs=58.7
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----C-CCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p-~~~~sFDlVvs~~~l 290 (460)
.+||=.|+|. |..+..+++... ...++++|.++...+.+++.|....+. ....+. . .....+|+|+-.-.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~~g- 254 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDAVG- 254 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEECCC-
Confidence 6788888753 555566666521 124888999999999998777643322 111111 0 12235898885421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|++||.+++...
T Consensus 255 -----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 255 -----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -----C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 1367778899999999998765
No 311
>PRK11524 putative methyltransferase; Provisional
Probab=76.55 E-value=2.7 Score=42.03 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCCCccEEEEc--ccc-c-------ccc-----ccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 276 YPSLSFDMVHCA--QCG-I-------IWD-----KKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 276 ~~~~sFDlVvs~--~~l-~-------~~~-----~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
+++++||+|++. +.. . .+. +-....+.++.|+|||||.+++..
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 457788888884 211 0 010 112358899999999999999864
No 312
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=75.38 E-value=30 Score=35.26 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=60.7
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHH-HcCCCeEEEeecccCC-----CCCCCCccEEEEccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~-~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~ 289 (460)
.+||=.|+ |.|.++..+++... .++++++.+++..+.++ +.|....+..-+...+ ....+.+|+|+-.-.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 68888887 47888888887632 56888899998888876 5666443321100011 011246898885421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.+..+.|++||.+++...
T Consensus 238 --------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 238 --------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred --------HHHHHHHHHHhccCCEEEEECc
Confidence 1367888999999999998764
No 313
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=74.97 E-value=19 Score=36.99 Aligned_cols=96 Identities=26% Similarity=0.260 Sum_probs=65.4
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcC-CCeEEEeecccC-----CCCCC-CCccEEEEccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-LPAMIGNFISRQ-----LPYPS-LSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rg-l~~~~~~~d~~~-----Lp~~~-~sFDlVvs~~~ 289 (460)
.+|+=+|||+ |.++..+++.. -...++.+|.++.-++.|++.+ ........ .+. +.... ..||+|+=.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~-~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGADVVVNPS-EDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCCeEeecCc-cccHHHHHHHHhCCCCCCEEEECCC
Confidence 4899999996 77776666652 2367888999999999998853 33222211 100 01112 36999986632
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
...++.++.+++||||.+.+......
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 22388999999999999999887543
No 314
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=74.81 E-value=11 Score=39.04 Aligned_cols=100 Identities=23% Similarity=0.235 Sum_probs=69.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---C--CCeEEEeecccCCCCC-CCCccEEEEccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G--LPAMIGNFISRQLPYP-SLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---g--l~~~~~~~d~~~Lp~~-~~sFDlVvs~~~l~ 291 (460)
.+|||-=+|+|.=+.+++..... ..++.-|+|+..++.++++ + ........|+..+-.. ...||+|=. -
T Consensus 54 ~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 54 KRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred eEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 78999999999999999887443 3788999999999988765 2 2233333333333221 366887753 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
.+ ..+.-++....+..|.||++.++......
T Consensus 129 PF-GSPaPFlDaA~~s~~~~G~l~vTATD~a~ 159 (380)
T COG1867 129 PF-GSPAPFLDAALRSVRRGGLLCVTATDTAP 159 (380)
T ss_pred CC-CCCchHHHHHHHHhhcCCEEEEEeccccc
Confidence 33 23334888999999999999998775543
No 315
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=74.57 E-value=8.5 Score=43.11 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=55.7
Q ss_pred CeEEEeCCCCchHHHHHHhc-------cC----ceeEEEEeeCCH---HHHHHHHH--------------------cCC-
Q 012624 218 QSVLDVGCGFGSFGAHLVSL-------KL----MAVCVAVYEATG---SQVQLALE--------------------RGL- 262 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~-------~~----~~~~v~giD~s~---~~l~~A~~--------------------rgl- 262 (460)
-+|||+|-|+|.......+. +. ....++++|..+ +.+..+.+ .|.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 68999999999866555422 11 136788888543 33332221 011
Q ss_pred ---------CeEEEeecccC-CCCCCCCccEEEEccccccccccH----HHHHHHHHHhcCCCcEEEEE
Q 012624 263 ---------PAMIGNFISRQ-LPYPSLSFDMVHCAQCGIIWDKKE----GIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 263 ---------~~~~~~~d~~~-Lp~~~~sFDlVvs~~~l~~~~~d~----~~~L~ei~RvLkPGG~lvl~ 317 (460)
...+..+|+.+ ++--+..||+++.-. +-.- .++ ..+|+++.|+++|||.|.-.
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPA-KNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCc-cChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 11122233321 221125689998742 2221 122 35999999999999999844
No 316
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.18 E-value=23 Score=35.57 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=57.8
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeecc--cCC-C-CCCCCccEEEEccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFIS--RQL-P-YPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d~--~~L-p-~~~~sFDlVvs~~~l~ 291 (460)
.+||=+|+| .|.++..+++... .+ ++.+|.+++..+.+++.|....+..-+. +.+ . .....+|+|+-.-.
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g-- 240 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG-- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC--
Confidence 677778765 3445555665521 34 8889999999999887776433321110 011 0 12346999985421
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
. ...+.+..+.|++||.+++....
T Consensus 241 ----~-~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 241 ----N-TAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcCC
Confidence 1 22567778899999999987653
No 317
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=72.88 E-value=10 Score=39.33 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=34.6
Q ss_pred CeEEEeCCCCchHHHHHHhcc-------CceeEEEEeeCCHHHHHHHHHc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK-------LMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~-------~~~~~v~giD~s~~~l~~A~~r 260 (460)
..++|||.|.|.++..+++.. ....++.-+++|++..+.-++.
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 689999999999999888752 1357889999999987765554
No 318
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.85 E-value=13 Score=33.98 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=40.6
Q ss_pred HHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 197 ~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
.+++.+.+....+ .+..+.+|+|.|.|......++.+. ..-+|++.++-.+..++-+
T Consensus 58 teQv~nVLSll~~-----n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~ 114 (199)
T KOG4058|consen 58 TEQVENVLSLLRG-----NPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLH 114 (199)
T ss_pred HHHHHHHHHHccC-----CCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHH
Confidence 4455555544332 2236899999999998888888773 4568999999998877644
No 319
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.67 E-value=24 Score=34.58 Aligned_cols=92 Identities=22% Similarity=0.181 Sum_probs=58.1
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc----cCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS----RQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~----~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+||=+|+| .|..+..+++. |. ..++.+|.++.-.+.+++.|....+..-+. ..+. ....+|+|+-.-.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~G-- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFSG-- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECCC--
Confidence 678888875 34555556655 32 237778999988888888776433321110 0111 2235898876421
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|+|||.+++...
T Consensus 197 ----~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ----A-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ----C-hHHHHHHHHHhcCCCEEEEecc
Confidence 1 2367888999999999998774
No 320
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=71.95 E-value=23 Score=34.14 Aligned_cols=91 Identities=24% Similarity=0.153 Sum_probs=56.2
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+||=.|+|. |..+..+++... .. +++++.+++..+.+++.+....+... ..-....+.+|+|+..-.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~d~vl~~~~------ 168 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEALGPADPVAAD--TADEIGGRGADVVIEASG------ 168 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHcCCCcccccc--chhhhcCCCCCEEEEccC------
Confidence 6777778754 555555665522 34 88889999888888877621111111 100113456898885421
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
....+.+..+.|+++|.++....
T Consensus 169 -~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 -SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -ChHHHHHHHHHhcCCcEEEEEec
Confidence 12367788999999999987654
No 321
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.95 E-value=30 Score=36.75 Aligned_cols=86 Identities=16% Similarity=0.051 Sum_probs=56.7
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
++|+=+|+|. |.....+++. | .+++.+|.++.-.+.|++.|.... ..+ +.+ ..+|+|+..- .
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~d~d~~R~~~A~~~G~~~~--~~~-e~v----~~aDVVI~at------G 266 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVTEVDPICALQAAMEGYEVM--TME-EAV----KEGDIFVTTT------G 266 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEECChhhHHHHHhcCCEEc--cHH-HHH----cCCCEEEECC------C
Confidence 7899999996 5544444443 4 468889999888888877665322 111 111 3479998752 1
Q ss_pred cHHHHHH-HHHHhcCCCcEEEEEeCC
Q 012624 296 KEGIFLI-EADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 296 d~~~~L~-ei~RvLkPGG~lvl~~~~ 320 (460)
.. .++. +..+.+|+||.++.....
T Consensus 267 ~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 NK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 22 2454 458999999999988753
No 322
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=71.78 E-value=19 Score=36.09 Aligned_cols=89 Identities=24% Similarity=0.163 Sum_probs=58.0
Q ss_pred CeEEEeCCC--CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCG--tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+|+=+|.| -|+++..+.+.|. ...+++.|.+.+..+.+.+.++......... --.....|+|+.+ ..+ .
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~---~~~~~~aD~Viva---vPi-~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELTVAGL---AEAAAEADLVIVA---VPI-E 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCcccccccchh---hhhcccCCEEEEe---ccH-H
Confidence 467777777 4667777777764 3678999999999999987776554322110 1123457999875 233 2
Q ss_pred cHHHHHHHHHHhcCCCcEE
Q 012624 296 KEGIFLIEADRLLKPGGYF 314 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~l 314 (460)
....+++++...|++|..+
T Consensus 76 ~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHHHhcccCCCCCEE
Confidence 3345777777777777543
No 323
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=71.77 E-value=39 Score=33.40 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=60.0
Q ss_pred CeEEEeC--CCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----CCCCCCccEEEEcccc
Q 012624 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIG--CGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~l 290 (460)
.+||=.| .|.|..+..+++.. ...+++++.+++..+.+++.|....+..- ..++ ....+.+|+|+-.-.
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~-~~~~~~~v~~~~~~gvd~vld~~g- 220 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFNYK-TVSLEEALKEAAPDGIDCYFDNVG- 220 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeCC-CccHHHHHHHHCCCCcEEEEECCC-
Confidence 6787777 45677777787763 25688888888888888887764333211 1111 011246898885421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.+..+.|+++|.++....
T Consensus 221 -------~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 221 -------GEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred -------HHHHHHHHHhhccCCEEEEEcc
Confidence 1367889999999999987653
No 324
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=70.85 E-value=20 Score=35.86 Aligned_cols=85 Identities=22% Similarity=0.165 Sum_probs=54.3
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+||=+|+| .|.++..+++. |. ..++.+|.+++.++.|.+.. . .+.... ..+.||+|+-.-.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~--~~v~~~~~~~~rl~~a~~~~----~--i~~~~~--~~~g~Dvvid~~G------ 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGG--SPPAVWETNPRRRDGATGYE----V--LDPEKD--PRRDYRAIYDASG------ 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHhhhhcc----c--cChhhc--cCCCCCEEEECCC------
Confidence 567877876 46677777765 42 23666788887777765421 1 111111 2346898886531
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|++||.+++...
T Consensus 210 ~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 2367888999999999998765
No 325
>PRK11524 putative methyltransferase; Provisional
Probab=70.48 E-value=14 Score=36.94 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=35.7
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
..|||-=+|+|+.+....+.+ ...+|+|++++-.+.|++|
T Consensus 210 D~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 210 DIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 789999999999988877765 5789999999999999888
No 326
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=70.08 E-value=23 Score=36.08 Aligned_cols=94 Identities=23% Similarity=0.205 Sum_probs=61.5
Q ss_pred CeEEEeC--CCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEE--eec-ccCC-C-CCCCCccEEEEcccc
Q 012624 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIG--NFI-SRQL-P-YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIG--CGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~--~~d-~~~L-p-~~~~sFDlVvs~~~l 290 (460)
.+||=.| .|.|.++..|++.-. ..++.+-.+++-.+++++.|....+. ..| .+++ . .....+|+|+-.-.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG- 220 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG- 220 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC-
Confidence 7888888 567889999998732 24455556666666887777654443 111 1111 1 22346999997531
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
...+.+..+.|++||.++......
T Consensus 221 -------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 221 -------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred -------HHHHHHHHHHhccCCEEEEEecCC
Confidence 236777889999999999987654
No 327
>PLN02827 Alcohol dehydrogenase-like
Probab=69.82 E-value=38 Score=35.00 Aligned_cols=93 Identities=16% Similarity=0.019 Sum_probs=56.9
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc-cC----C-CCCCCCccEEEEccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQ----L-PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~-~~----L-p~~~~sFDlVvs~~~ 289 (460)
.+||=+|+|. |.++..+++. |. ..++++|.++...+.|++.|....+..-+. .. + ....+.+|+|+-.-.
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~--~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGA--SQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 6888888653 4455555554 32 257788999999999988776433321110 00 0 011235898886421
Q ss_pred cccccccHHHHHHHHHHhcCCC-cEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~~ 319 (460)
. ...+.+..+.|++| |.+++...
T Consensus 273 ------~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 273 ------D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ------C-hHHHHHHHHhhccCCCEEEEECC
Confidence 1 12577888899999 99987654
No 328
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=69.73 E-value=24 Score=36.69 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=63.0
Q ss_pred CCeEEEeCCCCchHHHHHHhccCc---eeEEEEeeCCHHHHHHH---HHc-CC-CeEEEeecccCC---------CCCCC
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLM---AVCVAVYEATGSQVQLA---LER-GL-PAMIGNFISRQL---------PYPSL 279 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~---~~~v~giD~s~~~l~~A---~~r-gl-~~~~~~~d~~~L---------p~~~~ 279 (460)
..+|||+.+..|+=+..|.+.... ...+++-|.+..-+... ..+ .. ...+...+.... +....
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 379999999999988888776321 12578889887644433 222 11 111222222211 22345
Q ss_pred CccEEEEc-----ccccc---------ccc-------cH-HHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 280 SFDMVHCA-----QCGII---------WDK-------KE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 280 sFDlVvs~-----~~l~~---------~~~-------d~-~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
.||-|.|- .+.+. |.. .. -.+|..-.++||+||.++.++-..+.
T Consensus 236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 69999872 11110 110 01 14688889999999999999875544
No 329
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.39 E-value=31 Score=34.44 Aligned_cols=92 Identities=25% Similarity=0.218 Sum_probs=58.4
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC----C--CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ----L--PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~----L--p~~~~sFDlVvs~~~l 290 (460)
.+||-.|+|. |..+..+++.- ...++.+..+++..+.+++.+....+. ..... + -.++..+|+++....
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGADDTIN-VGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCCCEEec-CcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 6888888763 66777777662 256777777888888887666432221 11111 1 013456899986521
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|+++|.++....
T Consensus 237 -----~-~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 237 -----N-PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred -----C-HHHHHHHHHHHhcCCEEEEEcC
Confidence 1 2367888999999999987654
No 330
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=69.09 E-value=14 Score=40.22 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=62.2
Q ss_pred CCeEEEeCCCCc-hHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc---------cC------------C
Q 012624 217 VQSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---------RQ------------L 274 (460)
Q Consensus 217 ~~~VLDIGCGtG-~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~---------~~------------L 274 (460)
..+||=+|+|.- ..+..+++.- ...++.+|.+++..+.+++.+......+... .. +
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 479999999964 5555555541 2468889999998888877655432211100 00 1
Q ss_pred CCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEE
Q 012624 275 PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 275 p~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lv 315 (460)
+-.-..+|+|+.+- +..-.+.+..+.+++.+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 10124699998873 45544455457888999999999977
No 331
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=68.36 E-value=30 Score=35.07 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=57.6
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc--cCC----C--CCCCCcc----EE
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQL----P--YPSLSFD----MV 284 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~--~~L----p--~~~~sFD----lV 284 (460)
.+||=+|+|. |..+..+++... ..++.+|.+++.++.+++.|....+...+. +.+ . .....+| +|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 6899999864 566666666532 468889999999999988776433321110 000 0 0112344 44
Q ss_pred EEccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 285 vs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
+-.- .. ...+....++|++||++++....
T Consensus 246 ~d~~------g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 246 FECS------GS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EECC------CC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 4221 11 23677788899999999988753
No 332
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=68.02 E-value=4.6 Score=39.50 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=32.3
Q ss_pred CeEEEeCCCCchHHHHHHhcc--C-----ceeEEEEeeCCHHHHHHHHHc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK--L-----MAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~--~-----~~~~v~giD~s~~~l~~A~~r 260 (460)
-+|+|+|+|+|.++..+++.- . ...+++-+|+|+.+.+..+++
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 689999999999999988751 1 236889999999887766655
No 333
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.93 E-value=36 Score=34.51 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=69.1
Q ss_pred EEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCC-CCCccEEEEccccccc-----
Q 012624 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP-SLSFDMVHCAQCGIIW----- 293 (460)
Q Consensus 220 VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~-~~sFDlVvs~~~l~~~----- 293 (460)
|+|+=||.|.+...|.+.|. ..+.++|+++...+.-+.+... .+...|+.++... -..+|+++...--..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 58999999999999988874 3466799999888766554322 2223444444311 1248999875211111
Q ss_pred ---cccH-HHHHHHHHHhc---CCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee
Q 012624 294 ---DKKE-GIFLIEADRLL---KPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (460)
Q Consensus 294 ---~~d~-~~~L~ei~RvL---kPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~ 353 (460)
.++. ..++.++.|++ +|. +++.+........ .....+..+....+.+++.+...
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~----~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSH----DKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhc----ccchHHHHHHHHHHhCCCEEEEE
Confidence 1222 24555555554 664 5555554332111 11233445555556677766443
No 334
>PLN02740 Alcohol dehydrogenase-like
Probab=67.58 E-value=36 Score=35.10 Aligned_cols=94 Identities=20% Similarity=0.071 Sum_probs=57.8
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc-----cCC-CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-----RQL-PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~-----~~L-p~~~~sFDlVvs~~~l 290 (460)
.+||=+|+|. |..+..+++... ...++++|.+++..+.+++.|....+..-+. +.+ ....+.+|+|+-.-.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G- 277 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG- 277 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC-
Confidence 6888888753 445555565421 1258889999999999988776443321110 000 011236898886521
Q ss_pred ccccccHHHHHHHHHHhcCCC-cEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPG-G~lvl~~~ 319 (460)
. ...+.+..+.+++| |.+++...
T Consensus 278 -----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 278 -----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred -----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 1 13677888899997 99887764
No 335
>PRK13699 putative methylase; Provisional
Probab=67.11 E-value=19 Score=34.82 Aligned_cols=40 Identities=20% Similarity=0.012 Sum_probs=35.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
..|||-=||+|+.+....+.+ ..++|+|+++...+.|.+|
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 689999999999998877766 5788999999999988776
No 336
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=66.40 E-value=33 Score=35.12 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=52.6
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHH-HHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQ-VQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~-l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+||=.|+| .|.++..+++... ..++.++.+... .+.+++.|....+..-+...+.-..+.+|+|+-.-.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g------ 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS------ 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC------
Confidence 567778875 3556666666522 456666666544 344455565433321111111100124888885421
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|++||.++....
T Consensus 257 ~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 1367788999999999998764
No 337
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=65.75 E-value=59 Score=32.57 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=59.3
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH-cCCCeEEEeecccCC-----CCCCCCccEEEEccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGLPAMIGNFISRQL-----PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~-rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~ 289 (460)
.+||=.|+ |.|.++..+++... ..+++++.+++..+.+++ .|....+...+...+ ....+.+|+|+-.-.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 68888885 56777777777622 467888888888888877 565433321100010 011246898885421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.+..+.|++||.++....
T Consensus 231 --------~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 231 --------GKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred --------HHHHHHHHHHhccCcEEEEecc
Confidence 1367888999999999997653
No 338
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=64.30 E-value=5.3 Score=42.91 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=69.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc---C-CC----eEEEeecc--cCCCCCCCCccEEEE
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G-LP----AMIGNFIS--RQLPYPSLSFDMVHC 286 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r---g-l~----~~~~~~d~--~~Lp~~~~sFDlVvs 286 (460)
.-+|||.=|++|.-+.+.+..-.....+++.|.++..++..+++ + .. ....++.. ...+-.+..||+|..
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 36899999999999999888744457889999999998866543 1 11 11122211 112233578999985
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
- .+ ..+..+|..+.+.++.||.+.++.....
T Consensus 190 D----Py-Gs~s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 190 D----PY-GSPSPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred C----CC-CCccHHHHHHHHHhhcCCEEEEEecchH
Confidence 3 33 2334589999999999999999876543
No 339
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.64 E-value=24 Score=30.82 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=50.8
Q ss_pred CeEEEeCCCCch-HHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGtG~-~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+|.|||-|-=. .+..|+++| ..+.++|+.+. .|. .|+++...+....++..- ..-|+|.+..+ +++
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a~-~g~~~v~DDitnP~~~iY-~~A~lIYSiRp----ppE 82 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TAP-EGLRFVVDDITNPNISIY-EGADLIYSIRP----PPE 82 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcC---CcEEEEecccc---cCc-ccceEEEccCCCccHHHh-hCccceeecCC----CHH
Confidence 589999988654 667777777 57899999887 333 566666665533333321 34688887753 234
Q ss_pred HHHHHHHHHHhcC
Q 012624 297 EGIFLIEADRLLK 309 (460)
Q Consensus 297 ~~~~L~ei~RvLk 309 (460)
....+-++.+.++
T Consensus 83 l~~~ildva~aVg 95 (129)
T COG1255 83 LQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHhhC
Confidence 4455666666554
No 340
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.98 E-value=48 Score=33.39 Aligned_cols=93 Identities=22% Similarity=0.187 Sum_probs=58.0
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----C-CCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p-~~~~sFDlVvs~~~l 290 (460)
.+||=.|+| .|..+..+++... ...++++|.+++..+.+++.|....+... ...+ . .....+|+|+-...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~~g~~~~v~~~-~~~~~~~i~~~~~~~~~d~vld~~g- 244 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKEYGATDIVDYK-NGDVVEQILKLTGGKGVDAVIIAGG- 244 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCCceEecCC-CCCHHHHHHHHhCCCCCcEEEECCC-
Confidence 677777765 3555566665521 12578889998888888877754332211 1111 0 12346898885421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|+++|.++....
T Consensus 245 -----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 245 -----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 1 2367899999999999987654
No 341
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=62.32 E-value=52 Score=32.83 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=55.0
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC------CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L------p~~~~sFDlVvs~~~l 290 (460)
.+||-.|+| .|..+..+++.-.. ..++.++.++...+.+++.+....+. .....+ -...+.+|+++-...
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~~~d~vld~~g- 245 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGRGVDCVIEAVG- 245 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCCCCcEEEEccC-
Confidence 677777765 35566666665211 25677788887777777666332221 111110 012356998885421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
....+.+..+.|+++|.++...
T Consensus 246 ------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 ------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1137888899999999998765
No 342
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=61.71 E-value=67 Score=32.90 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=58.3
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-ccC----C-CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-SRQ----L-PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-~~~----L-p~~~~sFDlVvs~~~l 290 (460)
.+||=+|+|. |..+..+++... ...++.+|.+++..+.+++.|....+...+ ... + ....+.+|+|+-.-.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G- 264 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG- 264 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC-
Confidence 6788888753 556666666521 126888999999999998877654332111 000 0 011235888875421
Q ss_pred ccccccHHHHHHHHHHhcCCC-cEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPG-G~lvl~~~ 319 (460)
. ...+.+..+.+++| |.+++...
T Consensus 265 -----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 265 -----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred -----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1 23677888899986 99887764
No 343
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=60.93 E-value=74 Score=33.56 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=68.5
Q ss_pred ccc-cchhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------
Q 012624 188 LVF-DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------ 260 (460)
Q Consensus 188 ~~f-d~~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------ 260 (460)
..| +........+.+.+..+++ ....|+|.|.|.....++..+.. ..-+|+++....-+.|...
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~--------D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk 241 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPA--------DVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKK 241 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCC--------CcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHH
Confidence 444 3333444455555666655 78899999999988888776432 2224555443322222111
Q ss_pred -----CC---CeEEEeecccC---CCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 261 -----GL---PAMIGNFISRQ---LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 261 -----gl---~~~~~~~d~~~---Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
|- ......++... ...-...-++|+++.+ -+.++...-+.++..-+++|-+++-+.+...
T Consensus 242 ~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~--~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 242 LMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNV--AFDPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecc--cCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 21 22222221110 0011234677777753 3334554456799999999999988877554
No 344
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=60.68 E-value=55 Score=32.67 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=56.6
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeecc--cCC-C-CCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFIS--RQL-P-YPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d~--~~L-p-~~~~sFDlVvs~~~l~ 291 (460)
.+||-.|+|. |..+..+++... .. ++.++.++...+.+++.+....+..-+. ..+ . .....+|+|+...
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~--- 235 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA--- 235 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC---
Confidence 6788888654 556666665521 33 7788888888887766665322221100 000 1 1233599998642
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.....+..+.+.|+++|.++....
T Consensus 236 ----g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 236 ----GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred ----CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 112367888999999999987764
No 345
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=60.12 E-value=34 Score=35.37 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=53.4
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHH-HHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQ-VQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~-l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+||=.|+| .|..+..+++... ..++.++.+.+. .+.+++.|....+..-+...+.-..+.+|+|+-.- .
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~------G 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV------S 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC------C
Confidence 677777875 3555566666522 457777776544 56666666543332111001100012478887542 1
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|++||.++....
T Consensus 252 ~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 A-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred c-HHHHHHHHHhhcCCCEEEEEcc
Confidence 1 2367788899999999998764
No 346
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=59.41 E-value=99 Score=30.46 Aligned_cols=88 Identities=26% Similarity=0.275 Sum_probs=54.4
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+||=.|+| .|..+..+++.- ...++.++.+++..+.+++.|....+.. ... ...+.+|+++-... .
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~~d~vid~~g------~ 224 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARRLGVETVLPD---EAE-SEGGGFDVVVEATG------S 224 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCCcEEeCc---ccc-ccCCCCCEEEECCC------C
Confidence 677777753 233333444432 2457888888999998887665433221 111 23456999986421 1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEe
Q 012624 297 EGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
...+..+.+.|+++|.++...
T Consensus 225 -~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 225 -PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -hHHHHHHHHHhhcCCEEEEEc
Confidence 236778888999999999743
No 347
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=59.32 E-value=26 Score=34.38 Aligned_cols=78 Identities=22% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHHHHHHhcC
Q 012624 230 FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLK 309 (460)
Q Consensus 230 ~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLk 309 (460)
++..|.+.|. ...|+|+|.++...+.|.+.|+....... .+.+ ..+|+|+..- .. .....+++++...++
T Consensus 1 ~A~aL~~~g~-~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~----~~~Dlvvlav---P~-~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGP-DVEVYGYDRDPETLEAALELGIIDEASTD-IEAV----EDADLVVLAV---PV-SAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTT-TSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHG----GCCSEEEE-S----H-HHHHHHHHHHHCGS-
T ss_pred ChHHHHhCCC-CeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHh----cCCCEEEEcC---CH-HHHHHHHHHhhhhcC
Confidence 4567777763 37899999999999999888876554321 1111 2369998752 22 234468888888888
Q ss_pred CCcEEEEE
Q 012624 310 PGGYFVLT 317 (460)
Q Consensus 310 PGG~lvl~ 317 (460)
+|+.+.=.
T Consensus 71 ~~~iv~Dv 78 (258)
T PF02153_consen 71 PGAIVTDV 78 (258)
T ss_dssp TTSEEEE-
T ss_pred CCcEEEEe
Confidence 88765433
No 348
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.09 E-value=22 Score=29.99 Aligned_cols=73 Identities=21% Similarity=0.117 Sum_probs=49.8
Q ss_pred eCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHH
Q 012624 223 VGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLI 302 (460)
Q Consensus 223 IGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ 302 (460)
+-||.|..+..+++ .+-+.++++|+++.+......+++-..+.+|+|+.. +...-.+.
T Consensus 5 l~C~~GaSSs~la~---------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~-------PQv~~~~~ 62 (99)
T cd05565 5 VLCAGGGTSGLLAN---------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILA-------PQMASYYD 62 (99)
T ss_pred EECCCCCCHHHHHH---------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEc-------ChHHHHHH
Confidence 56788855555443 356678888999888776666655445568988765 44445678
Q ss_pred HHHHhcCCCcEEEEE
Q 012624 303 EADRLLKPGGYFVLT 317 (460)
Q Consensus 303 ei~RvLkPGG~lvl~ 317 (460)
++...+.+-|.-+..
T Consensus 63 ~i~~~~~~~~ipv~~ 77 (99)
T cd05565 63 ELKKDTDRLGIKLVT 77 (99)
T ss_pred HHHHHhhhcCCCEEE
Confidence 888888887764443
No 349
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=58.97 E-value=85 Score=32.03 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=57.6
Q ss_pred CeEEEeCCC-CchHHHHHHhccCcee-EEEEeeCCHHHHHHHHHcCCCeEEEeeccc-CC-----CCCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISR-QL-----PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~rgl~~~~~~~d~~-~L-----p~~~~sFDlVvs~~~ 289 (460)
.+||=+|+| .|..+..+++.. .. .++++|.+++..+.+++.|....+...+.. .+ ...++.+|+|+-.-.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 678878864 344555566542 14 688899999999998877764333211100 00 011236898886421
Q ss_pred cccccccHHHHHHHHHHhcCCC-cEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~~ 319 (460)
. ...+.+..+.|++| |.+++...
T Consensus 266 ------~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 266 ------N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred ------C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 1 23677888999997 99988764
No 350
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=58.17 E-value=1.2e+02 Score=29.92 Aligned_cols=88 Identities=24% Similarity=0.257 Sum_probs=53.2
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+||=.|+|. |..+..+++.. ...++.++.+++..+.+++.|....+. .... +++.+|+++... ..
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~---~~~~--~~~~vD~vi~~~------~~ 235 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELARELGADWAGD---SDDL--PPEPLDAAIIFA------PV 235 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHHhCCcEEec---cCcc--CCCcccEEEEcC------Cc
Confidence 4566676542 23334444442 256778888888888886666532221 1111 245688877431 11
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.++.+.|++||.++....
T Consensus 236 -~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 236 -GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred -HHHHHHHHHHhhcCCEEEEEcC
Confidence 2378899999999999997653
No 351
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=58.07 E-value=29 Score=35.49 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=65.6
Q ss_pred CCeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-CCCeEEEeecccCCCCCCCCccEEEEcccccccc
Q 012624 217 VQSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 217 ~~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~ 294 (460)
..+|.=||.|. |..+..++-- ....|+-.|.|..-++..... +.+++...-....+.-.-...|+|+.. +++.-.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga-VLIpga 244 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA-VLIPGA 244 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE-EEecCC
Confidence 35778888885 7788777764 236888899998766655433 334333322222222223468999987 466666
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEE
Q 012624 295 KKEGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 295 ~d~~~~L~ei~RvLkPGG~lvl~ 317 (460)
..+....+|+...+|||+.++=.
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEE
Confidence 77777899999999999988743
No 352
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.64 E-value=76 Score=31.82 Aligned_cols=92 Identities=22% Similarity=0.195 Sum_probs=56.5
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeecccC-------C--CCCCCCccEEEE
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFISRQ-------L--PYPSLSFDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d~~~-------L--p~~~~sFDlVvs 286 (460)
.+||=.|+|. |..+..+++.-. .. ++.++.++...+.+++.+....+..- ... + ......||+|+-
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~g~~~vi~~~-~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKELGATHTVNVR-TEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHcCCcEEeccc-cccchhHHHHHHHHhCCCCCCEEEE
Confidence 5677777654 556666666521 34 77778888888877666554332211 111 0 123455999986
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
... ....+.+..+.|+++|.++....
T Consensus 241 ~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 241 CTG-------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCC-------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 421 11267888999999999987654
No 353
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=57.33 E-value=85 Score=32.74 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=58.5
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC----C--CCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL----P--YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L----p--~~~~sFDlVvs~~~ 289 (460)
.+||=.|+| .|..+..+++. |. ..++..|.+++-++.|++.|... +.......+ . .....+|+|+-.-.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga--~~vi~~d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGA--AVVIVGDLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 556557775 34455556654 43 23556688888899998887642 211100010 0 12346899886432
Q ss_pred ccc-------ccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 290 GII-------WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 290 l~~-------~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
... ...+....+.+..+++++||.+++....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 110 0012234789999999999999997764
No 354
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=56.90 E-value=87 Score=31.91 Aligned_cols=95 Identities=18% Similarity=0.087 Sum_probs=56.5
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc-c----CC-CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-R----QL-PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~-~----~L-p~~~~sFDlVvs~~~l 290 (460)
.+||=+|+| .|..+..+++... ...++++|.++...+.+++.|....+...+. . .+ ....+.+|+|+-.-.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g- 263 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTG- 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCC-
Confidence 677777864 2445555555421 1268888999999998877775432211100 0 00 011246898885421
Q ss_pred ccccccHHHHHHHHHHhcCCC-cEEEEEeCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPG-GYFVLTSPE 320 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPG-G~lvl~~~~ 320 (460)
. ...+.+..+.|++| |.+++....
T Consensus 264 -----~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 264 -----N-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred -----C-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 1 23678888999886 999887653
No 355
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=56.83 E-value=25 Score=35.78 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=62.1
Q ss_pred CeEEEeCCCCchHHHHHHhcc-------------------CceeEEEEeeCCHHH--HHHHHH---c-------------
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK-------------------LMAVCVAVYEATGSQ--VQLALE---R------------- 260 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~-------------------~~~~~v~giD~s~~~--l~~A~~---r------------- 260 (460)
.+||-||.|.|.-...++..- ....+++.+|+.+-. ++.... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999986444443321 112588899987532 221111 0
Q ss_pred ------CCCeEEEeecccCCCCCC-------CCccEEEEcccccccc----ccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 261 ------GLPAMIGNFISRQLPYPS-------LSFDMVHCAQCGIIWD----KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 261 ------gl~~~~~~~d~~~Lp~~~-------~sFDlVvs~~~l~~~~----~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
.+.+.|.+.|+..+..++ .+.|+|...+.+.... ...-++|..+...++||-.|++.|.+..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 123345555554444221 2456666654433321 2334689999999999999999987654
No 356
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=56.33 E-value=73 Score=33.21 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=56.1
Q ss_pred CeEEEeC--CCCchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHc--------CCCeEEEeecc-cCCC------CCCC
Q 012624 218 QSVLDVG--CGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER--------GLPAMIGNFIS-RQLP------YPSL 279 (460)
Q Consensus 218 ~~VLDIG--CGtG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~r--------gl~~~~~~~d~-~~Lp------~~~~ 279 (460)
.+||=+| .|.|..+..+++. |.-...++++|.+++.++.+++. |....+.+... ..+. ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 5788786 3467777777776 21123688999999999998775 32212221100 1110 1234
Q ss_pred CccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEE
Q 012624 280 SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 280 sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 317 (460)
.||+|+..-. . ...+.+..+.++++|.+++.
T Consensus 257 g~D~vid~~g------~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 257 GFDDVFVFVP------V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCEEEEcCC------C-HHHHHHHHHHhccCCeEEEE
Confidence 6898876421 1 24778889999988876654
No 357
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=55.31 E-value=34 Score=28.42 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=46.5
Q ss_pred eCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHHH
Q 012624 223 VGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLI 302 (460)
Q Consensus 223 IGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ 302 (460)
+-||+|.-+..+++ .+-+.+.++|+++.+...+..+..-....+|+|+++ ++....+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~-------Pqv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG-------PQVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC-------hhHHHHHH
Confidence 45888876665543 234567778888777766554443234568999876 34444667
Q ss_pred HHHHhcCC-CcEEEEEeCC
Q 012624 303 EADRLLKP-GGYFVLTSPE 320 (460)
Q Consensus 303 ei~RvLkP-GG~lvl~~~~ 320 (460)
++.+.+.+ +-.+...++.
T Consensus 62 ~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHhccCCCcEEEcChH
Confidence 77765544 4445555553
No 358
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=54.63 E-value=18 Score=37.90 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCCCCccEEEEcccccccccc--HHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 276 YPSLSFDMVHCAQCGIIWDKK--EGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 276 ~~~~sFDlVvs~~~l~~~~~d--~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
.+++++|.++.++ ...|.++ ....++++.+.++|||++++-.....
T Consensus 291 ~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 291 LPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 4589999999988 5667543 34689999999999999999876543
No 359
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=53.48 E-value=1.5e+02 Score=29.82 Aligned_cols=93 Identities=26% Similarity=0.298 Sum_probs=55.8
Q ss_pred CeEEEeCCC-CchHHHHHHhccCcee-EEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC---------CCCCCccEEEE
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQLP---------YPSLSFDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp---------~~~~sFDlVvs 286 (460)
.+||=.|+| .|..+..+++.. .. .+++++.+++..+.+++.+....+. ......+ ...+.+|+|+-
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~i~~~~~~~~~d~vid 255 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREFGADATID-IDELPDPQRRAIVRDITGGRGADVVIE 255 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCCCeEEc-CcccccHHHHHHHHHHhCCCCCcEEEE
Confidence 567777754 234445555542 24 6788888888888887666543221 1111000 12346898885
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
... . ...+.+..+.|+++|.++.....
T Consensus 256 ~~g------~-~~~~~~~~~~l~~~G~~v~~g~~ 282 (361)
T cd08231 256 ASG------H-PAAVPEGLELLRRGGTYVLVGSV 282 (361)
T ss_pred CCC------C-hHHHHHHHHHhccCCEEEEEcCC
Confidence 421 1 23677888999999999987643
No 360
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=53.46 E-value=87 Score=30.90 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEEee--ecceeeeee
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ--QDETFIWQK 362 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~~~--~~~~~iw~k 362 (460)
....|..++..|.|||++++-+... ...-+++.++.++.+-..-.. +...+.|+|
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY~~-----------~gcr~AvdeF~~~~gi~~~l~~id~~~v~w~k 247 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDYGH-----------PGCRKAVDEFRAEHGITDPLHPIDWTGVYWRK 247 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESSTTT-----------HHHHHHHHHHHHHTT--S--EE-SSS-EEEE-
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCC-----------hHHHHHHHHHHHHcCCCCccEEecCceEEEec
Confidence 3468999999999999999998743 122344555655554433222 233345655
No 361
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.27 E-value=25 Score=29.36 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=55.2
Q ss_pred CCCchHHHHHHhccC-ceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC-CC-CCCCCccEEEEccccccccccHHHHH
Q 012624 225 CGFGSFGAHLVSLKL-MAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LP-YPSLSFDMVHCAQCGIIWDKKEGIFL 301 (460)
Q Consensus 225 CGtG~~a~~La~~~~-~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~-Lp-~~~~sFDlVvs~~~l~~~~~d~~~~L 301 (460)
||.|.++..+++.-. ....++.+|.+++.++.+++.+..+..++..... +. ..-...|.|++... .+.....+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~~ 79 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLLI 79 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHHH
Confidence 566777777766511 1147899999999999999988665555442111 10 12246787777531 11222355
Q ss_pred HHHHHhcCCCcEEEEEeC
Q 012624 302 IEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 302 ~ei~RvLkPGG~lvl~~~ 319 (460)
....|-+-|...++....
T Consensus 80 ~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 80 ALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHCCCCeEEEEEC
Confidence 566677888888887765
No 362
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=53.16 E-value=1.1e+02 Score=30.99 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=56.5
Q ss_pred CeEEEeCCC-CchHHHHHHhccCcee-EEEEeeCCHHHHHHHHHcCCCeEEEeecccC----C-C-CCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQ----L-P-YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~----L-p-~~~~sFDlVvs~~~ 289 (460)
.+||-.|+| .|..+..+++... . .++.++.++...+.+++.+....+. ..... + . .+.+.+|+++..-.
T Consensus 184 ~~vLI~g~g~vG~a~i~lak~~G--~~~Vi~~~~~~~~~~~~~~~g~~~vv~-~~~~~~~~~l~~~~~~~~vd~vld~~~ 260 (363)
T cd08279 184 DTVAVIGCGGVGLNAIQGARIAG--ASRIIAVDPVPEKLELARRFGATHTVN-ASEDDAVEAVRDLTDGRGADYAFEAVG 260 (363)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHHhCCeEEeC-CCCccHHHHHHHHcCCCCCCEEEEcCC
Confidence 577777764 3555566666522 3 3778888888888877666532221 11101 0 0 12456998885421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|+++|.++....
T Consensus 261 ------~-~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 261 ------R-AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred ------C-hHHHHHHHHHhhcCCeEEEEec
Confidence 1 2367889999999999987754
No 363
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=53.01 E-value=1.1e+02 Score=30.54 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=54.6
Q ss_pred CeEEEeCCCC-chHHHHHHhccCcee-EEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC-----CCCCCccEEEEcccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQLP-----YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp-----~~~~sFDlVvs~~~l 290 (460)
.+||-.|+|. |..+..+++... . .++.++.++...+.+++.+....+. ....... ...+.+|+|+..-.
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vd~vld~~g- 240 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKKMGADVVIN-PREEDVVEVKSVTDGTGVDVVLEMSG- 240 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCcceeeC-cccccHHHHHHHcCCCCCCEEEECCC-
Confidence 5666667643 555566666521 3 5667777777777777666532221 1111110 12356899986421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
....+.++.+.|+++|.++....
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 241 ------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred ------CHHHHHHHHHHhccCCEEEEEcc
Confidence 12357788899999999987754
No 364
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.02 E-value=37 Score=28.21 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=45.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
.+|| +-||+|.-+..+++ .+-+.+.++|+++.+...+..+++-....+|+|+.. ++.
T Consensus 4 ~~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~-------pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLA-------PQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEEC-------chH
Confidence 3566 66888866655543 345667788998887766555443233568999876 333
Q ss_pred HHHHHHHHHhcCCCc
Q 012624 298 GIFLIEADRLLKPGG 312 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG 312 (460)
...+.++...+.+-|
T Consensus 61 ~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 61 AYMLPDLKKETDKKG 75 (95)
T ss_pred HHHHHHHHHHhhhcC
Confidence 335666666665533
No 365
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=51.99 E-value=31 Score=33.53 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCCeEEEeCCCCchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHc
Q 012624 216 GVQSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 216 ~~~~VLDIGCGtG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~r 260 (460)
.+-++-|=.||.|.+.--+.-. +.....+.+-|+++++++.|+++
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 4478999999999876544322 22346899999999999998765
No 366
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=51.82 E-value=76 Score=31.76 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=51.9
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+|.=||+|. +.++..+.+.+. ...++++|.+++..+.+++.+....... +... .-...|+|+..-.. .
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~~-~~~~---~~~~aDvViiavp~----~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVTT-SAAE---AVKGADLVILCVPV----G 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceecC-CHHH---HhcCCCEEEECCCH----H
Confidence 5688888885 345556665553 2478899999988888877664322111 1111 11347888875311 1
Q ss_pred cHHHHHHHHHHhcCCCcEEE
Q 012624 296 KEGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lv 315 (460)
....++.++...+++|+.+.
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEE
Confidence 12345666767777776544
No 367
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=51.76 E-value=15 Score=25.23 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcc
Q 012624 19 LSWLLLCFLSIVALIAVLGSS 39 (460)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ 39 (460)
.+|+++.+..+++||++.|-|
T Consensus 14 r~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999998854
No 368
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=51.74 E-value=50 Score=36.70 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=58.9
Q ss_pred CeEEEeCCCCchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-C-CCCCCccEEEEcccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-P-YPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-p-~~~~sFDlVvs~~~l~~~~ 294 (460)
..|+=+| .|.++..+++. ......++.+|.+++.++.+++.|.++.++|+...+. . ..-+..|++++..
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~------ 472 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITC------ 472 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEe------
Confidence 3455555 55555555442 1112578899999999999988888887776632211 0 1224578877753
Q ss_pred ccHH--HHHHHHHHhcCCCcEEEEEeCCC
Q 012624 295 KKEG--IFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 295 ~d~~--~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+|.+ ..+-+..|.+.|...++......
T Consensus 473 ~d~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 473 NEPEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 2222 24445667788988888776543
No 369
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.53 E-value=20 Score=33.29 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhC-eEEEeeecceeeeeecc
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC-WSLIAQQDETFIWQKTV 364 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~-w~~~~~~~~~~iw~k~~ 364 (460)
....+.+++|+|||||.+++......... .....+.+..+ |... +..+|.|..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-----------~~~~~~~~~~g~~~~~----~~iiW~K~~ 88 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAG-----------FLFELALEIFGGFFLR----NEIIWNKPN 88 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECT-----------HHHHHHHHHHTT-EEE----EEEEEE-SS
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhH-----------HHHHHHHHHhhhhhee----ccceeEecC
Confidence 45689999999999999998866432110 12233444445 5443 455888873
No 370
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=50.21 E-value=1.1e+02 Score=31.02 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=57.8
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc---cCC-CCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQL-PYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~---~~L-p~~~~sFDlVvs~~~l~ 291 (460)
.+||=.|+|. |..+..+++. |. ..++++|.++...+.+++.+....+..-+. +.+ ....+.+|+|+-.-.
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~--~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g-- 263 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGC--TTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTG-- 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCC--
Confidence 6777777653 5555666655 32 258889999988888877665333221100 000 011346898885421
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
. ...+.++.+.|+++|.++.....
T Consensus 264 ----~-~~~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 264 ----V-PAVIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred ----C-cHHHHHHHHHhccCCEEEEeCcC
Confidence 1 13678899999999999987653
No 371
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=50.20 E-value=1.1e+02 Score=31.28 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=51.8
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHH-HcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~-~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+||=.|+| .|..+..+++... ..++.++.+++..+.+. +.|....+...+...+.-..+.+|+|+-.- .
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~---g--- 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV---P--- 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC---C---
Confidence 567766654 4556666666522 45666777776655543 345432221111111100112478877542 1
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
....+.+..+.|++||.++.....
T Consensus 254 -~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 254 -VFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred -chHHHHHHHHHhccCCEEEEECCC
Confidence 123677888999999999987653
No 372
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.12 E-value=1e+02 Score=31.35 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=57.2
Q ss_pred CeEEEeCCC-CchHHHHHHhccCcee-EEEEeeCCHHHHHHHHHcCCCeEEEeecc-cCC-----CCCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFIS-RQL-----PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~rgl~~~~~~~d~-~~L-----p~~~~sFDlVvs~~~ 289 (460)
.+||=.|+| .|..+..+++.. .. .++++|.+++..+.+++.|....+...+. ..+ ....+.+|+|+-.-.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G 266 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG 266 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 678888764 244555556542 13 68889999999999987776433321110 000 011235888875421
Q ss_pred cccccccHHHHHHHHHHhcCCC-cEEEEEeCC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSPE 320 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~~~ 320 (460)
. ...+....+.+++| |.+++....
T Consensus 267 ------~-~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 267 ------N-IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred ------C-hHHHHHHHHHhhcCCCEEEEECcC
Confidence 1 23677788899996 999887653
No 373
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=50.09 E-value=2.1e+02 Score=30.92 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=61.9
Q ss_pred CeEEEeCCCCchHHHHHHhc---cCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEeecccCCC-C-CCCCccEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQLP-Y-PSLSFDMVH 285 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~---~~~~~~v~giD~s~~~l~~A~~r----gl~---~~~~~~d~~~Lp-~-~~~sFDlVv 285 (460)
..|.|.-||+|.+.....+. +.....++|.+....+...++.. +.. ......|...-+ + ....||.|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 57999999999988654432 22235689999999998887653 221 112222222211 1 235688887
Q ss_pred Ecccc--------------------ccc----cccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 286 CAQCG--------------------IIW----DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 286 s~~~l--------------------~~~----~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
++--. .|. .+..-.++..+..+|++||...+.-+.
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 65210 111 011224778889999999987766653
No 374
>PTZ00357 methyltransferase; Provisional
Probab=49.97 E-value=72 Score=36.19 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=59.1
Q ss_pred CeEEEeCCCCchHHHHHHhc----cCceeEEEEeeCCHHHHHHHHHc--------------CCCeEEEeecccCCCCC--
Q 012624 218 QSVLDVGCGFGSFGAHLVSL----KLMAVCVAVYEATGSQVQLALER--------------GLPAMIGNFISRQLPYP-- 277 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~----~~~~~~v~giD~s~~~l~~A~~r--------------gl~~~~~~~d~~~Lp~~-- 277 (460)
..|+=+|+|-|-+....++. +. ..++.++|-++....+.+.+ |-.+.++..|...+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gv-kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGV-RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCC-cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc
Confidence 36899999999877665543 43 47899999995432222221 12356666666666432
Q ss_pred ---------CCCccEEEEccccccccccH--HHHHHHHHHhcCC----CcE
Q 012624 278 ---------SLSFDMVHCAQCGIIWDKKE--GIFLIEADRLLKP----GGY 313 (460)
Q Consensus 278 ---------~~sFDlVvs~~~l~~~~~d~--~~~L~ei~RvLkP----GG~ 313 (460)
-+.+|+||+-. +-.+.++. .+-|.-+.+.||+ +|+
T Consensus 781 ~~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 13799999853 34443322 2578888888887 775
No 375
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=49.32 E-value=1.6e+02 Score=30.06 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=73.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC---CCCCCccEEEEccccccc-
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW- 293 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp---~~~~sFDlVvs~~~l~~~- 293 (460)
.+++|+=||.|.+...+...|. --+.++|+++..++.-+.+.....+...|+..+. +....+|+++...--..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 5899999999999998888884 3567889999888765544332333333333332 111178999975322222
Q ss_pred -------cccHH-H---HHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeE
Q 012624 294 -------DKKEG-I---FLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWS 349 (460)
Q Consensus 294 -------~~d~~-~---~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~ 349 (460)
.+|.. . -+.++...++| .+++.+.+.+-... ....++.+..-.+++++.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-----~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-----KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-----CchHHHHHHHHHHHcCCc
Confidence 12222 2 34556666788 66666655433211 234666666666777765
No 376
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=49.26 E-value=95 Score=30.97 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=58.0
Q ss_pred CeEEEeCC--CCchHHHHHHhccCcee-EEEEeeCCHHHHHHHHH-cCCCeEEEeecccCC-----CCCCCCccEEEEcc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALE-RGLPAMIGNFISRQL-----PYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~-rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~ 288 (460)
.+||=.|+ |.|..+..+++.. .. .+++++.+++..+.+++ .|....+..- ...+ ...++.+|+|+-.-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~-~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGFDAAINYK-TDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCCcEEEECC-CCCHHHHHHHHCCCCceEEEECC
Confidence 57887875 5777888887762 24 68888889888887765 5654333211 1111 01124699998642
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 289 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
. . ..+.+..+.|++||.++...
T Consensus 233 g------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C------c--HHHHHHHHHhccCCEEEEEe
Confidence 1 1 13577889999999999765
No 377
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=49.06 E-value=1.5e+02 Score=29.66 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=56.3
Q ss_pred CeEEEeCCC-CchHHHHHHhccCcee-EEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----C-CCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~-~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p-~~~~sFDlVvs~~~ 289 (460)
.+||=.|+| .|..+..+++.. .. .++.++.+++..+.+++.+....+... ..++ . ...+.+|+|+-...
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~-~~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEELGATIVLDPT-EVDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCCCEEECCC-ccCHHHHHHHHhCCCCCCEEEECCC
Confidence 567767753 344555555552 24 677888888888888776654333211 1110 0 12345899886421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
. ...+.++.+.|++||.++.....
T Consensus 251 ------~-~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 251 ------V-QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred ------C-HHHHHHHHHhccCCCEEEEEccC
Confidence 1 23678889999999999887653
No 378
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=48.91 E-value=12 Score=35.77 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCchhHHHHHHHHHHHHHHHHhcc
Q 012624 2 RSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSS 39 (460)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (460)
|-|--+|.++|+++--+.+.+++|++.+++.|+..++|
T Consensus 191 rCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt 228 (275)
T KOG4684|consen 191 RCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILT 228 (275)
T ss_pred cCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45666899999998888899999988888888888877
No 379
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=48.62 E-value=1.4e+02 Score=29.76 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=54.9
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeecccCC------CCCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L------p~~~~sFDlVvs~~~ 289 (460)
.+||-.|+| .|..+..+++... .. ++.++.++...+.+++.+....+... ...+ ....+.||+|+-...
T Consensus 163 ~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~~~v~~~-~~~~~~~l~~~~~~~~~d~vld~~g 239 (340)
T TIGR00692 163 KSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKMGATYVVNPF-KEDVVKEVADLTDGEGVDVFLEMSG 239 (340)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCCcEEEccc-ccCHHHHHHHhcCCCCCCEEEECCC
Confidence 556666654 3445555555421 33 66778888888877776653322211 1110 012356899986421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
....+.++.+.|+++|.++....
T Consensus 240 -------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 240 -------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred -------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 12367889999999999988765
No 380
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=48.35 E-value=10 Score=24.48 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=16.2
Q ss_pred cCCCCCCCCCCCcccCCCC
Q 012624 117 DRHCGMSGLGDRCLVRPPK 135 (460)
Q Consensus 117 er~Cp~~~~~~~Cl~~~P~ 135 (460)
..||||+|-....++|.|+
T Consensus 4 ga~~pppeislna~fptpp 22 (32)
T PF07629_consen 4 GADCPPPEISLNARFPTPP 22 (32)
T ss_pred CCCCCCCcceeccccCCCh
Confidence 4699998888999998885
No 381
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=47.99 E-value=67 Score=32.23 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.....|+|.-.|.|+-.|.+++ +.|+++|..+ |.+-....|. +.....|..+..-.....|-.+|-.+ +.
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~-ma~sL~dtg~-v~h~r~DGfk~~P~r~~idWmVCDmV-----Ek 281 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP-MAQSLMDTGQ-VTHLREDGFKFRPTRSNIDWMVCDMV-----EK 281 (358)
T ss_pred CceeeecccCCCccchhhhhcc---eEEEEeccch-hhhhhhcccc-eeeeeccCcccccCCCCCceEEeehh-----cC
Confidence 3789999999999999999997 6889999654 4443333332 33333333333223467898888753 55
Q ss_pred HHHHHHHHHHhcCCC
Q 012624 297 EGIFLIEADRLLKPG 311 (460)
Q Consensus 297 ~~~~L~ei~RvLkPG 311 (460)
+.++-.-|...|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 555555666666544
No 382
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=47.78 E-value=1.8e+02 Score=28.39 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=55.3
Q ss_pred CeEEEeCCC--CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc---cCC--CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQL--PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG--tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~---~~L--p~~~~sFDlVvs~~~l 290 (460)
.+||=.|.+ .|..+..++.... .+++.++.+++..+.+.+.+....+...+. ..+ ....+.+|+++....
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g- 244 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLFG--ATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVG- 244 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCc-
Confidence 678878765 4556555555422 467778888887777766554322221110 000 012346898886532
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
...+.++.+.|+++|.++.....
T Consensus 245 -------~~~~~~~~~~l~~~G~~v~~~~~ 267 (342)
T cd08266 245 -------AATWEKSLKSLARGGRLVTCGAT 267 (342)
T ss_pred -------HHHHHHHHHHhhcCCEEEEEecC
Confidence 12466778899999998877543
No 383
>PRK10458 DNA cytosine methylase; Provisional
Probab=47.48 E-value=2.2e+02 Score=30.84 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=32.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
-+++|+=||.|.+...+-..|. ..+.++|+++...+.-+.+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHH
Confidence 5899999999999999988775 3567889998776654443
No 384
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.35 E-value=8.1 Score=33.98 Aligned_cols=18 Identities=17% Similarity=0.567 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 012624 20 SWLLLCFLSIVALIAVLG 37 (460)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (460)
||+++.++|+++||++++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 466666666666666655
No 385
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=46.88 E-value=37 Score=34.27 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCCCchhhhHHHHHHHHHHHHhCeEEE
Q 012624 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (460)
Q Consensus 278 ~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~~ 351 (460)
.+.||+|+.+....|... .++.++++|||.+++.....-- .+..+....--+.+.++++..+|+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~------p~l~~~~a~~A~LvvEtaKfmv--dLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK------PELFQALAPDAVLVVETAKFMV--DLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcc------hHHHHHhCCCCEEEEEcchhhe--eCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 467999998765555432 1378899999999998752211 11112233334678888988888653
No 386
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=45.72 E-value=1.5e+02 Score=29.98 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=55.1
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeecccCC------CCCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L------p~~~~sFDlVvs~~~ 289 (460)
.+||=.|+| .|..+..+++... .. ++.++.+++..+.+++.+....+.. +...+ ...+..||+|+..-.
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~~g~~~v~~~-~~~~~~~~l~~~~~~~~~d~vld~vg 265 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKELGATHTVNA-AKEDAVAAIREITGGRGVDVVVEALG 265 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHhCCceEecC-CcccHHHHHHHHhCCCCCCEEEEeCC
Confidence 566655654 4455555555421 34 7788888888888876665322221 11111 012456999986421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. ..+.++.+.|+++|.++....
T Consensus 266 ------~~-~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 266 ------KP-ETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred ------CH-HHHHHHHHHHhcCCEEEEEcc
Confidence 11 257788999999999987754
No 387
>PRK10083 putative oxidoreductase; Provisional
Probab=45.49 E-value=1.7e+02 Score=29.13 Aligned_cols=94 Identities=22% Similarity=0.189 Sum_probs=55.2
Q ss_pred CeEEEeCCC-CchHHHHHHhc--cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec---ccCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL--KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---SRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~--~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d---~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+||=.|+| .|..+..+++. |. ..++++|.+++..+.+++.|....+..-+ .+.+.-....+|+|+-..
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~--- 236 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNV--KAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAA--- 236 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECC---
Confidence 577778854 23444555552 43 34777899998888888777643332110 011111112345666432
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.. ...+.+..+.|++||.++.....
T Consensus 237 ---g~-~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 237 ---CH-PSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred ---CC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 11 23678889999999999987653
No 388
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=44.89 E-value=38 Score=35.23 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=52.6
Q ss_pred CCeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHc-CCCeEEEeecccCCCCCCCCccEEEEccccccc
Q 012624 217 VQSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 217 ~~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~r-gl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~ 293 (460)
..+|+=+|+| .|..+...+.. | ..++.+|.+++-.+.+.+. +..+.....+.+.+.-.-..+|+|+..-. ..-
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~-~~g 242 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL-IPG 242 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc-cCC
Confidence 3578999888 45555555544 4 4688899988766655443 22221111111111101135899997521 111
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
...+..+-+++.+.+|||+.++-..
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 1112223366677789998877543
No 389
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.73 E-value=28 Score=35.70 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=54.0
Q ss_pred CCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH-cCCCeEEEee-cccCCCCCCCCccEEEEccccccccccHHHHHH
Q 012624 225 CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGLPAMIGNF-ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLI 302 (460)
Q Consensus 225 CGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~-rgl~~~~~~~-d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ 302 (460)
+|-|.++..+++. ..++|+++|-+..--+.|-+ .|...-+... |.....--.++.|.++-. ...+ -...+.
T Consensus 191 GGLGh~aVq~AKA--MG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~--v~~~---a~~~~~ 263 (360)
T KOG0023|consen 191 GGLGHMAVQYAKA--MGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDT--VSNL---AEHALE 263 (360)
T ss_pred cccchHHHHHHHH--hCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCccee--eeec---cccchH
Confidence 3489999999987 23799999999755555544 3544433322 111111112345544322 1111 112567
Q ss_pred HHHHhcCCCcEEEEEeCCCC
Q 012624 303 EADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 303 ei~RvLkPGG~lvl~~~~~~ 322 (460)
.+.+.||++|.+++...+..
T Consensus 264 ~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 264 PLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred HHHHHhhcCCEEEEEeCcCC
Confidence 78899999999999887654
No 390
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=44.17 E-value=2.2e+02 Score=27.97 Aligned_cols=93 Identities=22% Similarity=0.187 Sum_probs=54.2
Q ss_pred eEEEeCCCC-c-hHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-----ccCCCCCCCCccEEEEccccc
Q 012624 219 SVLDVGCGF-G-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-----SRQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 219 ~VLDIGCGt-G-~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-----~~~Lp~~~~sFDlVvs~~~l~ 291 (460)
+|+=||+|. | .++..|++.| .+|+.++.+++.++..++.+......... ..+.. ....+|+|+..- -
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~--k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAV--K 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEec--c
Confidence 467788874 2 3555566555 46777887777777666666543100000 01111 125789998762 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. .+...++.++...+.++..++....
T Consensus 76 ~--~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 76 A--YQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred c--ccHHHHHHHHhhhcCCCCEEEEecC
Confidence 2 2445688888888888777665544
No 391
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=44.12 E-value=1.8e+02 Score=29.16 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=58.1
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-CCCeEEEeecccC------CCCCCCCccEEEEcc
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQ------LPYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-gl~~~~~~~d~~~------Lp~~~~sFDlVvs~~ 288 (460)
.+|+=+|+|. |.++..|.+.| ..|+.++-+++.++..++. |+... ....... .+-+.+.||+|+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G---~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~~~~~~~~~~~~~~~~~D~viv~- 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG---LPVRLILRDRQRLAAYQQAGGLTLV-EQGQASLYAIPAETADAAEPIHRLLLA- 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC---CCeEEEEechHHHHHHhhcCCeEEe-eCCcceeeccCCCCcccccccCEEEEE-
Confidence 5688899884 45677777666 3566677776666655543 54332 1111001 11123579998875
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 289 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
.-.+ +...+++.+...+.++..++......
T Consensus 78 -vK~~--~~~~al~~l~~~l~~~t~vv~lQNGv 107 (305)
T PRK05708 78 -CKAY--DAEPAVASLAHRLAPGAELLLLQNGL 107 (305)
T ss_pred -CCHH--hHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 2222 34468889999999999877776544
No 392
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=44.00 E-value=39 Score=29.61 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=22.6
Q ss_pred EeCCCCc--hHHHHHH-hccCceeEEEEeeCCHHHHHHHHHc
Q 012624 222 DVGCGFG--SFGAHLV-SLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 222 DIGCGtG--~~a~~La-~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
|||++.| .....++ +.......++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 2223346889999999987755443
No 393
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=43.05 E-value=2.4e+02 Score=27.09 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=56.1
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC------CCCCCccEEEEccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp------~~~~sFDlVvs~~~ 289 (460)
.+||-.|| +.|..+..+++.. ...++.++.++...+.+++.+....+... ..... .....+|+++....
T Consensus 141 ~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~i~~~~~~~~~d~v~~~~g 217 (323)
T cd08241 141 ETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARALGADHVIDYR-DPDLRERVKALTGGRGVDVVYDPVG 217 (323)
T ss_pred CEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHcCCceeeecC-CccHHHHHHHHcCCCCcEEEEECcc
Confidence 68999997 3455555555552 24678888888888888776653333211 10100 12346898876431
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+..+.+.++++|.++....
T Consensus 218 --------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 218 --------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred --------HHHHHHHHHhhccCCEEEEEcc
Confidence 1245667889999999887654
No 394
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=42.59 E-value=1.3e+02 Score=29.76 Aligned_cols=84 Identities=26% Similarity=0.139 Sum_probs=50.6
Q ss_pred eEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 219 SVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 219 ~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
+|.=||+|. |+++..|.+.| ..|.++|.+++..+.+.+.+...... .... .-...|+|+..-- . ..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~g~~~~~~----~~~~-~~~~aDlVilavp---~-~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIERGLVDEAS----TDLS-LLKDCDLVILALP---I-GL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCccccc----CCHh-HhcCCCEEEEcCC---H-HH
Confidence 355578774 56777777665 47899999999888887776421110 0111 1235788887521 1 22
Q ss_pred HHHHHHHHHHhcCCCcEE
Q 012624 297 EGIFLIEADRLLKPGGYF 314 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~l 314 (460)
...+++++...++|+-.+
T Consensus 70 ~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHhCCCCcEE
Confidence 234677887778776433
No 395
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=42.39 E-value=67 Score=35.90 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=57.1
Q ss_pred CeEEEeCCCC-chHH-HHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC--CCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCGF-GSFG-AHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--YPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a-~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp--~~~~sFDlVvs~~~l~~~ 293 (460)
.+|+=+|+|. |... ..|.+++ ..++.+|.+++.++.+++.|.++.++|+...+.- ..-+..|++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~----- 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI----- 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe-----
Confidence 5677777764 3323 3333334 4688899999999999888888777766322211 1224678887653
Q ss_pred cccHH--HHHHHHHHhcCCCcEEEEEeC
Q 012624 294 DKKEG--IFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ~~d~~--~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+|.+ ..+-+..|.+.|.-.++....
T Consensus 473 -~d~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 473 -DDPQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred -CCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 2222 344456666778777766544
No 396
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.95 E-value=2.5e+02 Score=27.11 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=58.6
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~l 290 (460)
.+||=.|+ +.|..+..+++... ..++.+..+++..+.+++.|....+.. ...+ .. .+.+|+|+....
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~~-~~~~d~vl~~~~- 217 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKELGADEVVID--DGAIAEQLRAA-PGGFDKVLELVG- 217 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCcEEEec--CccHHHHHHHh-CCCceEEEECCC-
Confidence 67777775 46677777776632 567788888888888877676433321 1111 12 456999886421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.++.+.|+++|.++....
T Consensus 218 -------~~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 218 -------TATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred -------hHHHHHHHHHhccCCEEEEEcc
Confidence 1367788999999999987764
No 397
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=41.82 E-value=1.4e+02 Score=26.88 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=47.6
Q ss_pred EEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 220 VLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 220 VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
|-=||.|. ..++..|++.| ..+..+|.+++..+...+.+ +.... +..++ -...|+|++.- .-.+..
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~g--~~~~~-s~~e~---~~~~dvvi~~v---~~~~~v 71 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAG---YEVTVYDRSPEKAEALAEAG--AEVAD-SPAEA---AEQADVVILCV---PDDDAV 71 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTT---TEEEEEESSHHHHHHHHHTT--EEEES-SHHHH---HHHBSEEEE-S---SSHHHH
T ss_pred EEEEchHHHHHHHHHHHHhcC---CeEEeeccchhhhhhhHHhh--hhhhh-hhhhH---hhcccceEeec---ccchhh
Confidence 44456542 12444445455 57889999998888777766 22221 11111 12348888752 211334
Q ss_pred HHHHHH--HHHhcCCCcEEEEEeC
Q 012624 298 GIFLIE--ADRLLKPGGYFVLTSP 319 (460)
Q Consensus 298 ~~~L~e--i~RvLkPGG~lvl~~~ 319 (460)
..++.+ +...|++|..++-...
T Consensus 72 ~~v~~~~~i~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 72 EAVLFGENILAGLRPGKIIIDMST 95 (163)
T ss_dssp HHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred hhhhhhhHHhhccccceEEEecCC
Confidence 456777 8888888887776554
No 398
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=41.61 E-value=1.8e+02 Score=28.96 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=53.4
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+||=.|+| .|..+..+++.. ...++.++.+++..+.+++.+....+...+........+.+|+|+.... . .
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g--~---~ 243 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVS--A---S 243 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCC--C---c
Confidence 455556653 344444455442 2467888888888888876664333221110000011356888885421 1 1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
..+.++.+.|+++|.++....
T Consensus 244 --~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 244 --HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred --chHHHHHHHhcCCCEEEEEec
Confidence 246788899999999998764
No 399
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=41.57 E-value=53 Score=29.06 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=46.4
Q ss_pred CeEEEeCCCCch-HHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGtG~-~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
.+|+|||-|.=. .+..|.+.| ..++++|+.+. .|. .|+++...+....++.. =...|+|.+... +.+
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~i-Y~~a~lIYSiRP----P~E 82 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KAP-EGVNFVVDDIFNPNLEI-YEGADLIYSIRP----PPE 82 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S--------STTEE---SSS--HHH-HTTEEEEEEES------TT
T ss_pred CcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---ccc-cCcceeeecccCCCHHH-hcCCcEEEEeCC----ChH
Confidence 689999998764 566666666 68999999987 333 57777776653322221 135799998763 234
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
....+.++.+.+ |.-+++...
T Consensus 83 l~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 83 LQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp SHHHHHHHHHHH--T-EEEEE-B
T ss_pred HhHHHHHHHHHh--CCCEEEECC
Confidence 455666666654 455555543
No 400
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=40.74 E-value=58 Score=28.51 Aligned_cols=92 Identities=20% Similarity=0.156 Sum_probs=53.7
Q ss_pred EEeCCCC-ch-HHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-----ccCCC---CCCCCccEEEEcccc
Q 012624 221 LDVGCGF-GS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-----SRQLP---YPSLSFDMVHCAQCG 290 (460)
Q Consensus 221 LDIGCGt-G~-~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-----~~~Lp---~~~~sFDlVvs~~~l 290 (460)
+=+|+|. |. ++..|.+.+ .+|..++-++ ..+..++.++.+.....+ ....+ ...+.+|+|+.+-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g---~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-- 75 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAG---HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-- 75 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTT---CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--
T ss_pred EEECcCHHHHHHHHHHHHCC---CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe--
Confidence 4466663 33 444554544 5677777777 666565666544322210 01111 2357899999762
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
-. .+...++..+.+.+.|+..+++....
T Consensus 76 Ka--~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 76 KA--YQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp SG--GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred cc--cchHHHHHHHhhccCCCcEEEEEeCC
Confidence 22 24456899999999999888777654
No 401
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.62 E-value=3e+02 Score=26.55 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=51.4
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC---CCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL---PYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L---p~~~~sFDlVvs~~~l~~ 292 (460)
.+||-.|+ +.|..+..+++... ..++.++.+ ...+.+++.+....+... .... ....+.+|+|+.... .
T Consensus 145 ~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~d~vi~~~~--~ 218 (319)
T cd08267 145 QRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVRSLGADEVIDYT-TEDFVALTAGGEKYDVIFDAVG--N 218 (319)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHHHcCCCEeecCC-CCCcchhccCCCCCcEEEECCC--c
Confidence 78999987 35666666666522 466776644 666777666653322211 1111 123456899986531 1
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
........+. .|+++|.++....
T Consensus 219 ---~~~~~~~~~~-~l~~~g~~i~~g~ 241 (319)
T cd08267 219 ---SPFSLYRASL-ALKPGGRYVSVGG 241 (319)
T ss_pred ---hHHHHHHhhh-ccCCCCEEEEecc
Confidence 1112222222 3999999998764
No 402
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=40.44 E-value=1.7e+02 Score=28.82 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=52.1
Q ss_pred eEEEeCCCC-c-hHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-------ccCCCCCCCCccEEEEccc
Q 012624 219 SVLDVGCGF-G-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-------SRQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 219 ~VLDIGCGt-G-~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-------~~~Lp~~~~sFDlVvs~~~ 289 (460)
+|+=+|+|. | .++..|++.| .+|+.++. ++.++..++.++.......+ ..+..-....+|+|+..-
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g---~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav- 76 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG---RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV- 76 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC---CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe-
Confidence 466778875 3 3566666655 45677777 66666666655433221111 001101125689887652
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
-. .....++.++...++++..++....
T Consensus 77 -k~--~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 77 -KA--YQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred -cc--cCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 11 2445688888888888776655433
No 403
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=40.35 E-value=1.7e+02 Score=29.29 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=55.8
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc--cCC--CCCCCCcc-EEEEcccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQL--PYPSLSFD-MVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~--~~L--p~~~~sFD-lVvs~~~l 290 (460)
.+||=.|+|. |..+..+++. |. ..++.++.+++..+.+++.|....+..-+. ..+ -.....+| +|+-.-
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~-- 237 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA-- 237 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC--
Confidence 6788888753 4455555554 32 236788999998888877665432221100 000 01234577 555321
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.. ...+.+..+.|++||.+++....
T Consensus 238 ----G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 238 ----GV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred ----CC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 11 23778889999999999988653
No 404
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=40.03 E-value=2.1e+02 Score=30.41 Aligned_cols=87 Identities=18% Similarity=0.067 Sum_probs=54.0
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
++|+=+|+|. |......++. ..++|+.+|.++.....|...|.. +... ++. . ...|+|++.- ..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~--~Ga~ViV~d~dp~r~~~A~~~G~~--v~~l--eea-l--~~aDVVItaT------G~ 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARG--MGARVIVTEVDPIRALEAAMDGFR--VMTM--EEA-A--KIGDIFITAT------GN 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhh--CcCEEEEEeCChhhHHHHHhcCCE--eCCH--HHH-H--hcCCEEEECC------CC
Confidence 7899999986 4444444443 225788888888665555554532 2222 111 1 2469988752 12
Q ss_pred HHHHHH-HHHHhcCCCcEEEEEeCC
Q 012624 297 EGIFLI-EADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 297 ~~~~L~-ei~RvLkPGG~lvl~~~~ 320 (460)
..++. +....+|+|++++.....
T Consensus 261 -~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 261 -KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred -HHHHHHHHHhcCCCCcEEEEECCC
Confidence 23454 588899999999998875
No 405
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=39.63 E-value=2.2e+02 Score=28.48 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=55.3
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC-------CCCCCccEEEEcc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp-------~~~~sFDlVvs~~ 288 (460)
.+||-.|+| .|..+..+++. |. ..++.++.++...+.+.+.|....+. ..... ...+.+|+++...
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALGP--ANIIVVDIDEAKLEAAKAAGADVVVN---GSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCcEEec---CCCccHHHHHHHHhCCCCcEEEECC
Confidence 677878764 34455555554 32 25677888888888887667543222 11111 1122588888642
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 289 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. . ...+.++.+.|+++|.++....
T Consensus 252 g------~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 252 N------N-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred C------C-HHHHHHHHHHhhcCCeEEEECC
Confidence 1 1 2368889999999999997654
No 406
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=39.48 E-value=1.9e+02 Score=29.65 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=55.4
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec---------ccCCCCCCCCccEEEE
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---------SRQLPYPSLSFDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d---------~~~Lp~~~~sFDlVvs 286 (460)
.+||=.|+|. |..+..+++. |. ..++.++.++...+.+++.|....+..-+ ..++ .....+|+|+.
T Consensus 205 ~~VlV~g~g~vG~~ai~lA~~~G~--~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDvvld 281 (384)
T cd08265 205 AYVVVYGAGPIGLAAIALAKAAGA--SKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWGADIQVE 281 (384)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCCCCCEEEE
Confidence 5666667642 3333444444 32 25788888888777877777644332110 0111 12346998886
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. ......+.++.+.|+++|.++....
T Consensus 282 ~~------g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 282 AA------GAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CC------CCcHHHHHHHHHHHHcCCEEEEECC
Confidence 42 1223467888999999999998764
No 407
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=38.37 E-value=84 Score=34.45 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=54.3
Q ss_pred CeEEEeCCCCchHHHHHHhcc-CceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC-CC-CCCCCccEEEEcccccccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LP-YPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~-~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~-Lp-~~~~sFDlVvs~~~l~~~~ 294 (460)
..++=+||| .++..+++.- -....++.+|.+++.++.+++.+.++.+++....+ +. ..-+..|.++..-.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~----- 490 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP----- 490 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC-----
Confidence 345555554 5555554430 01257889999999999998888777777653211 11 12246787765421
Q ss_pred ccHH-HHHHHHHHhcCCCcEEEEEeC
Q 012624 295 KKEG-IFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 295 ~d~~-~~L~ei~RvLkPGG~lvl~~~ 319 (460)
+|.+ ..+-...|.+.|...++....
T Consensus 491 ~~~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 491 NGYEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 2222 233344566678777776543
No 408
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=37.68 E-value=2e+02 Score=30.68 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=53.3
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
++|+=+|+|. |......++. ...+|+.+|.++.....+...|.. +... .+. -...|+|+..- ..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~~~G~~--v~~l--~ea---l~~aDVVI~aT------G~ 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRG--LGARVIVTEVDPICALQAAMDGFR--VMTM--EEA---AELGDIFVTAT------GN 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCchhhHHHHhcCCE--ecCH--HHH---HhCCCEEEECC------CC
Confidence 7899999884 3322222322 125788889888765555444433 2211 111 12589998752 12
Q ss_pred HHHHHH-HHHHhcCCCcEEEEEeCCC
Q 012624 297 EGIFLI-EADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 297 ~~~~L~-ei~RvLkPGG~lvl~~~~~ 321 (460)
. .++. +..+.+|+|++++......
T Consensus 278 ~-~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 278 K-DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred H-HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 2 2454 7889999999999888754
No 409
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=37.58 E-value=2.4e+02 Score=28.07 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=56.6
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC------CCCCCCccEEEEccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L------p~~~~sFDlVvs~~~ 289 (460)
.+||=.|+|. |..+..+++. |. ..++.++.++...+.+++.|....+. .....+ -...+.+|+|+....
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G~--~~v~~~~~~~~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVGA--RHVVITDVNEYRLELARKMGATRAVN-VAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhCCcEEec-CccccHHHHHHHhcCCCCCCEEEECCC
Confidence 5666667653 4555556654 32 14666788888888887777643321 111110 012356898886321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
....+.++.+.|+++|.++.....
T Consensus 242 -------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 242 -------APSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEecC
Confidence 123678889999999999998754
No 410
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.32 E-value=3e+02 Score=26.61 Aligned_cols=88 Identities=25% Similarity=0.299 Sum_probs=57.4
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+||=.|+ +.|..+..+++... ..++.++.+++..+.+++.|....+.. ..++ .++.+|+++-...
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~--~~~~~d~vl~~~g------ 201 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRELGAAEVVVG--GSEL--SGAPVDLVVDSVG------ 201 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCCcEEEec--cccc--cCCCceEEEECCC------
Confidence 67777776 45556666665522 467788888888888877665432221 1222 2346898886421
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 296 d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ..+.+..+.|+++|.++....
T Consensus 202 ~--~~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 202 G--PQLARALELLAPGGTVVSVGS 223 (305)
T ss_pred c--HHHHHHHHHhcCCCEEEEEec
Confidence 1 257788999999999997754
No 411
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.65 E-value=1.1e+02 Score=25.84 Aligned_cols=78 Identities=12% Similarity=0.190 Sum_probs=48.5
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCC--CCCCccEEEEcccccccccc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY--PSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~--~~~sFDlVvs~~~l~~~~~d 296 (460)
+|| +-||+|..+..+++. +-+.++++|+++.+...+..+++. ....||+|++. ++
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~-------PQ 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVS-------PQ 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEC-------hH
Confidence 344 568888876655543 345667888888776655544432 23468999876 34
Q ss_pred HHHHHHHHHHhcCCCcE-EEEEeC
Q 012624 297 EGIFLIEADRLLKPGGY-FVLTSP 319 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~-lvl~~~ 319 (460)
..-.+.++...+.+.|. +.+.++
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~ 83 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPP 83 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCH
Confidence 44456777777766554 444444
No 412
>PRK14756 hypothetical protein; Provisional
Probab=36.60 E-value=37 Score=21.92 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHHhccC
Q 012624 18 PLSWLLLCFLSIVALIAVLGSST 40 (460)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~ 40 (460)
-+|.-|+-.++.|++|+++|+|.
T Consensus 4 dLK~SL~tTvvaL~~Iva~~~ta 26 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVAVGLTA 26 (29)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH
Confidence 46777778888999999988773
No 413
>PLN02702 L-idonate 5-dehydrogenase
Probab=36.08 E-value=4.4e+02 Score=26.58 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=56.3
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEee-cccC-------CC-CCCCCccEEEE
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNF-ISRQ-------LP-YPSLSFDMVHC 286 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~-d~~~-------Lp-~~~~sFDlVvs 286 (460)
.+||=+|+| .|..+..+++. |. ..++.+|.++...+.+++.+....+... .... +. ...+.+|+|+-
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid 260 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAFGA--PRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFD 260 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEE
Confidence 567777764 34455555554 32 2467788888888887776765443211 0011 10 11346888886
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 287 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. .. ...+.++.+.|+++|.++....
T Consensus 261 ~~------g~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 261 CV------GF-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred CC------CC-HHHHHHHHHHHhcCCEEEEEcc
Confidence 42 11 1368889999999999887764
No 414
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=35.92 E-value=78 Score=32.59 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc
Q 012624 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (460)
Q Consensus 193 ~~~~~~~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r 260 (460)
...|+..|.+++..... .+....+-+|||.|+.-.-..+-.+. ....+.++|+....+..|.+.
T Consensus 82 R~nYihwI~DLLss~q~---~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~sn 145 (419)
T KOG2912|consen 82 RLNYIHWIEDLLSSQQS---DKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSN 145 (419)
T ss_pred chhhHHHHHHHhhcccC---CCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhcc
Confidence 45688888888775532 11223457999988765544443332 226788999988888887654
No 415
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=35.47 E-value=3.8e+02 Score=25.52 Aligned_cols=91 Identities=19% Similarity=0.121 Sum_probs=57.2
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec------ccCCCCCCCCccEEEEccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI------SRQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d------~~~Lp~~~~sFDlVvs~~~ 289 (460)
.+||=.|+ +.|..+..+++.. ...++.++.+++..+.+++.+....+...+ ...+ .....+|+|+....
T Consensus 138 ~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~~ 214 (320)
T cd05286 138 DTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREI-TGGRGVDVVYDGVG 214 (320)
T ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHH-cCCCCeeEEEECCC
Confidence 67887884 4566666666652 256778888888888887766543332111 0011 12346899886421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ..+.+..+.|+++|.++....
T Consensus 215 ------~--~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 215 ------K--DTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred ------c--HhHHHHHHhhccCcEEEEEec
Confidence 1 256678899999999997654
No 416
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=35.25 E-value=2.9e+02 Score=27.45 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=55.2
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc-cCC-----CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQL-----PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~-~~L-----p~~~~sFDlVvs~~~l 290 (460)
.+||=.|+| .|..+..+++.. ...++.++.+++..+.+++.+....+. ... ..+ .+..+.+|+|+..-.
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~d~vi~~~g- 242 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARELGAVATVN-ASEVEDVAAAVRDLTGGGAHVSVDALG- 242 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHhCCCEEEc-cccchhHHHHHHHHhCCCCCEEEEcCC-
Confidence 577777753 344445555542 256788888888888887666532221 111 111 011226898886521
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|+++|.++....
T Consensus 243 -----~-~~~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 243 -----I-PETCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEeCC
Confidence 1 2367788999999999887654
No 417
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.14 E-value=3.5e+02 Score=29.10 Aligned_cols=124 Identities=14% Similarity=0.167 Sum_probs=73.3
Q ss_pred HHHHHHHHHcc-CCCchhhccCCCeEEEeC---CC----CchHHHHHHhccCceeEEEEeeCC-HHHHHHH----HHcCC
Q 012624 196 YSRQIAEMIGL-GTDSEFLQAGVQSVLDVG---CG----FGSFGAHLVSLKLMAVCVAVYEAT-GSQVQLA----LERGL 262 (460)
Q Consensus 196 ~~~~i~~~l~~-~~~~~~~~~~~~~VLDIG---CG----tG~~a~~La~~~~~~~~v~giD~s-~~~l~~A----~~rgl 262 (460)
.++++.+.+.. .....+....+..||=+| .| .|-++.+|.+++.. .-+++.|.- ++.++.. .+-++
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~k-vllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKK-VLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCc-eEEEecccCChHHHHHHHHHHHHcCC
Confidence 45666666663 222223334456788886 33 34566777776543 556778875 3444333 23344
Q ss_pred CeEEEeecccCCC----------CCCCCccEEEEc-cccccccccHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012624 263 PAMIGNFISRQLP----------YPSLSFDMVHCA-QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (460)
Q Consensus 263 ~~~~~~~d~~~Lp----------~~~~sFDlVvs~-~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~~ 322 (460)
++.-. +...-| +..+.||+|+.- ...+|..++.-.-+.++.++++|.=.+++.|....
T Consensus 157 ~~f~~--~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 157 PFFGS--GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred ceecC--CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 43322 223333 345679999883 33456644444568889999999999999987654
No 418
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=34.79 E-value=4.1e+02 Score=26.39 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=55.5
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC---CCCCCccEEEEccccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp---~~~~sFDlVvs~~~l~~~ 293 (460)
.+||=.|+| .|..+..+++.- ...++.++.+++..+.+++.+....+. .....+. ...+.+|+++....
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~d~vi~~~g---- 237 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARKLGAHHYID-TSKEDVAEALQELGGAKLILATAP---- 237 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcCCcEEec-CCCccHHHHHHhcCCCCEEEECCC----
Confidence 678878853 244444555542 246788888888888887767533221 1111110 00134788875310
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
....+.++.+.|+++|.++.....
T Consensus 238 ---~~~~~~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 238 ---NAKAISALVGGLAPRGKLLILGAA 261 (333)
T ss_pred ---chHHHHHHHHHcccCCEEEEEecC
Confidence 123678889999999999987653
No 419
>PLN02494 adenosylhomocysteinase
Probab=34.04 E-value=1.6e+02 Score=31.90 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=53.6
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
++|+=+|+|. |......++. ..++|+.+|.++.....|...|..+. .+ .+. . ...|+|++.-. .
T Consensus 255 KtVvViGyG~IGr~vA~~aka--~Ga~VIV~e~dp~r~~eA~~~G~~vv--~l--eEa-l--~~ADVVI~tTG------t 319 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKA--AGARVIVTEIDPICALQALMEGYQVL--TL--EDV-V--SEADIFVTTTG------N 319 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchhhHHHHhcCCeec--cH--HHH-H--hhCCEEEECCC------C
Confidence 7899999884 3333333332 12578889988865555555554321 11 111 1 24799987432 1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 297 EGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
...+..+..+.+|+||+++.....
T Consensus 320 ~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 320 KDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ccchHHHHHhcCCCCCEEEEcCCC
Confidence 222347788899999999998773
No 420
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=33.83 E-value=2.7e+02 Score=29.25 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=53.4
Q ss_pred eEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHH---HHHHHcCCCeE-EEeecccCCCCCCCCccEEEEcccccccc
Q 012624 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---QLALERGLPAM-IGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 219 ~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l---~~A~~rgl~~~-~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~ 294 (460)
+||=|+=..|.++..|+..++. .+ .|.--... +-++..+++.. +...+. .-+++ +.+|+|+...- -. .
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~~~P-K~-~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI--GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLIKVP-KT-L 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee--ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEEEeC-CC-H
Confidence 6899999999999999976542 22 23221111 12223354432 111211 11233 45898876421 11 1
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 295 KKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 295 ~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
...+..+..+.++|.||+.++..+..
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 23345788899999999998766553
No 421
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.60 E-value=2.6e+02 Score=27.79 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=53.0
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC---C-CCCCCCccEEEEccccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ---L-PYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~---L-p~~~~sFDlVvs~~~l~ 291 (460)
.+||=.|+ +.|..+..+++... .+++.++.+. ..+.+++.+.. .+...+... . ......+|+|+....
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~g-- 252 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVADVVG-- 252 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEEecCC--
Confidence 67888886 35556666666522 4566666554 66777666653 222111100 0 113356999986531
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
...+.++.+.|+++|.++...
T Consensus 253 ------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 253 ------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred ------HHHHHHHHHHhccCCEEEEec
Confidence 125778899999999998764
No 422
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=31.72 E-value=3.7e+02 Score=26.69 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=52.9
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc------cCCCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS------RQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~------~~Lp~~~~sFDlVvs~~~l 290 (460)
.+||=.|+| .|..+..+++... ...++.++.++.....+++.+....+..... ..+ .....+|+|+..-
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~-- 243 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV-- 243 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEEEECC--
Confidence 455556653 2233344444421 1356778888888787776665332221100 111 1234699998542
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. ...+..+.+.|+++|.++....
T Consensus 244 ----g~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 244 ----GI-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred ----CC-HHHHHHHHHhccCCcEEEEecc
Confidence 12 2357888899999999987654
No 423
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.53 E-value=84 Score=29.57 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=34.6
Q ss_pred CCCCCccEEEEcccccccc-----------ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 276 YPSLSFDMVHCAQCGIIWD-----------KKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 276 ~~~~sFDlVvs~~~l~~~~-----------~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
...+..|+||++.|+..+. .+.++++..+..+|+|+-.+++....+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 4467789999998877652 234567888888899999999876544
No 424
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=30.54 E-value=4.4e+02 Score=26.92 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=55.8
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc------------------------
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS------------------------ 271 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~------------------------ 271 (460)
.+||=.|+ +.|..+..+++.. ...++.++.+++..+.+++.|....+..-+.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA--GANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRF 272 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchH
Confidence 67888886 4555666666652 2456677888888888887765332221000
Q ss_pred ----cCCCCCCC-CccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 272 ----RQLPYPSL-SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 272 ----~~Lp~~~~-sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
..+. ... .+|+|+.... . ..+.+..+.|+++|.++....
T Consensus 273 ~~~v~~l~-~~~~g~d~vid~~g------~--~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 273 GKAIWDIL-GGREDPDIVFEHPG------R--ATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred HHHHHHHh-CCCCCCeEEEECCc------h--HhHHHHHHHhccCCEEEEEcc
Confidence 0000 122 5888875421 1 246778899999999998754
No 425
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=30.47 E-value=40 Score=33.24 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=32.1
Q ss_pred CCcccccccccccCCCchhHHHHHHHHHHHHHHHHhccC
Q 012624 2 RSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSST 40 (460)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (460)
|-|-=+|.++|+..-+|.+.++++++.++++|+.+|+|.
T Consensus 179 RCPHCrKvSSVG~~faRkR~i~f~llgllfliiaigltv 217 (256)
T PF09788_consen 179 RCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTV 217 (256)
T ss_pred cCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 445557889998777888889999999999999999883
No 426
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=30.40 E-value=88 Score=31.02 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=26.2
Q ss_pred CeEEEeCCCCchHHHHHHhccC----ceeEEEEeeCCH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKL----MAVCVAVYEATG 251 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~----~~~~v~giD~s~ 251 (460)
..++|+|||.|.++.+++..-. ....+..+|-..
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 6899999999999999987631 235677788643
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=30.15 E-value=3.4e+02 Score=27.45 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=57.8
Q ss_pred eEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEee--cccC----CCCCCCCccEEEEcccc
Q 012624 219 SVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNF--ISRQ----LPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 219 ~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~--d~~~----Lp~~~~sFDlVvs~~~l 290 (460)
+|+=+|+|. |.++..|++.+ ....+. .-...++..++.|+.+.-... .... .+.....+|+|+.. .
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~---~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~--v 75 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLL---VRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT--V 75 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEE---ecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE--e
Confidence 577888884 55777777776 333332 333346666666665443222 1111 11223479999876 2
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
-.+ +.+.++..+...++|...+++.....
T Consensus 76 Ka~--q~~~al~~l~~~~~~~t~vl~lqNG~ 104 (307)
T COG1893 76 KAY--QLEEALPSLAPLLGPNTVVLFLQNGL 104 (307)
T ss_pred ccc--cHHHHHHHhhhcCCCCcEEEEEeCCC
Confidence 233 45568999999999999887776544
No 428
>PRK08507 prephenate dehydrogenase; Validated
Probab=29.79 E-value=2.2e+02 Score=27.85 Aligned_cols=85 Identities=24% Similarity=0.178 Sum_probs=49.4
Q ss_pred eEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccccc
Q 012624 219 SVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (460)
Q Consensus 219 ~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d 296 (460)
+|.=||+|. |.++..|.+.+. ...++++|.+++..+.+.+.+...... +...+ . + .|+|+..- .. ..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~~~~~g~~~~~~--~~~~~--~-~-aD~Vilav---p~-~~ 70 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKKALELGLVDEIV--SFEEL--K-K-CDVIFLAI---PV-DA 70 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHCCCCcccC--CHHHH--h-c-CCEEEEeC---cH-HH
Confidence 355567764 456666666553 347889999998888877666421111 11111 1 2 78888652 11 22
Q ss_pred HHHHHHHHHHhcCCCcEEE
Q 012624 297 EGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 297 ~~~~L~ei~RvLkPGG~lv 315 (460)
...++.++.. +++|..++
T Consensus 71 ~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 IIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHHhc-cCCCCEEE
Confidence 3346777777 77776443
No 429
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=29.43 E-value=3.2e+02 Score=26.76 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=58.0
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc--cCC-CCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQL-PYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~--~~L-p~~~~sFDlVvs~~~l~~ 292 (460)
.+||=+|+ +.|..+..+++.-. ..++.++.+++..+.+++.|....+..-+. +.+ ....+.+|+|+-..
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~---- 221 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPV---- 221 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECC----
Confidence 57887876 34556666666522 467788888888888877675333221110 000 11234588887542
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
.. ..+.+..+.|+++|.++.....
T Consensus 222 --g~--~~~~~~~~~l~~~G~~i~~g~~ 245 (326)
T cd08289 222 --GG--KTLAYLLSTLQYGGSVAVSGLT 245 (326)
T ss_pred --cH--HHHHHHHHHhhcCCEEEEEeec
Confidence 11 3577889999999999988653
No 430
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.33 E-value=2.1e+02 Score=28.68 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCc-hHHHHHHh-ccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcccccccc
Q 012624 217 VQSVLDVGCGFG-SFGAHLVS-LKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (460)
Q Consensus 217 ~~~VLDIGCGtG-~~a~~La~-~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~ 294 (460)
..+|+=||.|.- ......+. .| ..++.+|.++...+.+.+.+... ... ..+.-.-..+|+|+.+- +
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r~~~~~~~~~~~G~~~--~~~--~~l~~~l~~aDiVI~t~---p-- 219 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGARKSAHLARITEMGLSP--FHL--SELAEEVGKIDIIFNTI---P-- 219 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCee--ecH--HHHHHHhCCCCEEEECC---C--
Confidence 378999998752 22222232 24 57888899988777776655432 111 11111124689999852 1
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEe
Q 012624 295 KKEGIFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 295 ~d~~~~L~ei~RvLkPGG~lvl~~ 318 (460)
. ..+-+++.+.++||+.++-..
T Consensus 220 -~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 220 -A-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred -h-hhhhHHHHHcCCCCcEEEEEc
Confidence 1 123456778899998777443
No 431
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=29.20 E-value=62 Score=36.08 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=27.1
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG 251 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~ 251 (460)
..|||+||..|.|..-..+.-+...-|+|+|+-+
T Consensus 46 ~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 46 HVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred chheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 6899999999999988777644445678898755
No 432
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=28.78 E-value=5e+02 Score=26.40 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=56.9
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC-----CCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L-----p~~~~sFDlVvs~~~l 290 (460)
.+||=.|+| .|..+..+++. |. ..++.+|.++...+.+++.+.. .+ +.....+ ....+.+|+|+-....
T Consensus 178 ~~vlI~g~g~vg~~~~~~a~~~G~--~~vi~~~~~~~~~~~~~~~g~~-~v-~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 253 (375)
T cd08282 178 DTVAVFGAGPVGLMAAYSAILRGA--SRVYVVDHVPERLDLAESIGAI-PI-DFSDGDPVEQILGLEPGGVDRAVDCVGY 253 (375)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCe-Ee-ccCcccHHHHHHHhhCCCCCEEEECCCC
Confidence 566667775 34555555554 32 2567789999888888776642 11 1111110 0112468988864221
Q ss_pred cc----ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 II----WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~----~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. +..+....+.++.++|+++|.+.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 254 EARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred cccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 11 111233468899999999999976654
No 433
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.60 E-value=1.1e+02 Score=25.32 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=7.4
Q ss_pred eCCCCchHHHHH
Q 012624 223 VGCGFGSFGAHL 234 (460)
Q Consensus 223 IGCGtG~~a~~L 234 (460)
+-||+|.-+..+
T Consensus 7 vvCgsG~~TS~m 18 (94)
T PRK10310 7 VACGGAVATSTM 18 (94)
T ss_pred EECCCchhHHHH
Confidence 447777655555
No 434
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=28.48 E-value=5e+02 Score=25.46 Aligned_cols=92 Identities=26% Similarity=0.204 Sum_probs=50.0
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEE--eeCCHHHHHHHHHcCCCeEEEeecccCC------CCCCCCccEEEEcc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAV--YEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~g--iD~s~~~l~~A~~rgl~~~~~~~d~~~L------p~~~~sFDlVvs~~ 288 (460)
.+||=.|+| .|..+..+++... ..++. .+.+++..+.+++.+.... +.....+ -.....+|+++-..
T Consensus 166 ~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~l~~~~~~~~vd~vld~~ 241 (306)
T cd08258 166 DTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKELGADAV--NGGEEDLAELVNEITDGDGADVVIECS 241 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHhCCccc--CCCcCCHHHHHHHHcCCCCCCEEEECC
Confidence 455555542 3444455555422 34444 3445556666666665321 1111110 02235689888642
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 289 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
. ....+.+..+.|+++|.++.....
T Consensus 242 g-------~~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 242 G-------AVPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred C-------ChHHHHHHHHHhhcCCEEEEEccc
Confidence 1 124778889999999999977654
No 435
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=28.31 E-value=43 Score=21.12 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhccCc
Q 012624 24 LCFLSIVALIAVLGSSTS 41 (460)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~ 41 (460)
..=+++..+++++.|+|+
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345677778888888887
No 436
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=27.70 E-value=5.2e+02 Score=25.19 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=55.9
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHH-cCCCeEEEeec------ccCCCCCCCCccEEEEcc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGLPAMIGNFI------SRQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~-rgl~~~~~~~d------~~~Lp~~~~sFDlVvs~~ 288 (460)
.+||=.|. +.|..+..+++... ..++.++.++...+.+++ .+....+..-+ ...+. .+.+|+++-..
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~vi~~~ 222 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDVYFDNV 222 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceEEEEcc
Confidence 67877773 45666666666522 467888888888888766 45432222111 01111 24688887542
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 289 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|+++|.++....
T Consensus 223 g--------~~~~~~~~~~l~~~G~~v~~g~ 245 (329)
T cd05288 223 G--------GEILDAALTLLNKGGRIALCGA 245 (329)
T ss_pred h--------HHHHHHHHHhcCCCceEEEEee
Confidence 1 1367888999999999887653
No 437
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=27.53 E-value=5.1e+02 Score=25.40 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=56.0
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-c-cCC-CCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-S-RQL-PYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-~-~~L-p~~~~sFDlVvs~~~l~~ 292 (460)
.+||=.|+ +.|..+..+++.. ....++++..+++..+.+++.|....+.... . +.+ ....+.+|+|+-..
T Consensus 150 ~~vlV~ga~g~vg~~~~~~ak~~-~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~---- 224 (336)
T TIGR02817 150 RALLIIGGAGGVGSILIQLARQL-TGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLT---- 224 (336)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcC----
Confidence 57777774 5666777777741 0256788888888888887666543332010 0 000 02234688887431
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEE
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~ 317 (460)
.. ...+.++.+.|+++|.++..
T Consensus 225 --~~-~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 225 --HT-DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred --Cc-HHHHHHHHHHhccCCEEEEE
Confidence 01 23677889999999999865
No 438
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=27.19 E-value=5.1e+02 Score=26.39 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=71.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHH----HHcCCC-eEEEeecccCCCCC---CCCccEEEEccc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLP-AMIGNFISRQLPYP---SLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A----~~rgl~-~~~~~~d~~~Lp~~---~~sFDlVvs~~~ 289 (460)
+.|+=+| -.-.++..++--+. .-.++.+|+++..+.+. .+.|.+ +.....|.. -|+| .+.||+.+.--
T Consensus 154 K~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr-~plpe~~~~kFDvfiTDP- 229 (354)
T COG1568 154 KEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLR-NPLPEDLKRKFDVFITDP- 229 (354)
T ss_pred CeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhCccchhheeehhc-ccChHHHHhhCCeeecCc-
Confidence 5799998 44455555554443 36788899999988754 444655 444444432 2443 36899877531
Q ss_pred cccccccHHHHHHHHHHhcCCC---cEEEEEeCCCCCCCCCCchhhhHHHHHHHH-HHHHhCeEE
Q 012624 290 GIIWDKKEGIFLIEADRLLKPG---GYFVLTSPESKPRGSSSSRKNKSLLKVMEE-FTEKICWSL 350 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPG---G~lvl~~~~~~~~~~~~~~e~~~~w~~i~~-l~~~~~w~~ 350 (460)
-..+ +....++..=...||-- |+|.++... .....|.+++. +...+++-+
T Consensus 230 peTi-~alk~FlgRGI~tLkg~~~aGyfgiT~re----------ssidkW~eiQr~lIn~~gvVI 283 (354)
T COG1568 230 PETI-KALKLFLGRGIATLKGEGCAGYFGITRRE----------SSIDKWREIQRILINEMGVVI 283 (354)
T ss_pred hhhH-HHHHHHHhccHHHhcCCCccceEeeeecc----------ccHHHHHHHHHHHHHhcCeee
Confidence 1222 22334555555566655 888887642 44678988888 667777644
No 439
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=27.08 E-value=4.1e+02 Score=26.19 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=50.1
Q ss_pred CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC------CCCCCccEEEEccccccccccHHHH
Q 012624 227 FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQCGIIWDKKEGIF 300 (460)
Q Consensus 227 tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp------~~~~sFDlVvs~~~l~~~~~d~~~~ 300 (460)
.|..+..+++.- ...+++++.+++..+.+++.|....+..- ...+. .....+|+|+-.-. . ..
T Consensus 156 vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~v~~~~~~~~~d~vid~~g------~--~~ 224 (324)
T cd08291 156 LGRMLVRLCKAD--GIKVINIVRRKEQVDLLKKIGAEYVLNSS-DPDFLEDLKELIAKLNATIFFDAVG------G--GL 224 (324)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCcEEEECC-CccHHHHHHHHhCCCCCcEEEECCC------c--HH
Confidence 455666666652 24678888899888888876654433211 11110 12346898885421 1 13
Q ss_pred HHHHHHhcCCCcEEEEEeC
Q 012624 301 LIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 301 L~ei~RvLkPGG~lvl~~~ 319 (460)
+.+..+.|++||.++....
T Consensus 225 ~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 225 TGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred HHHHHHhhCCCCEEEEEEe
Confidence 4556788999999988764
No 440
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=26.89 E-value=1.3e+02 Score=29.82 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=50.9
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc------CCCe-----EE-----------EeecccC
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GLPA-----MI-----------GNFISRQ 273 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r------gl~~-----~~-----------~~~d~~~ 273 (460)
++|.=||+|. +.++..++..| ..|+.+|.+++.++.++++ ++.. .. ... ..+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG---YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCC
Confidence 5678888884 34556666666 4788999999988765432 1100 00 000 001
Q ss_pred CCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEE
Q 012624 274 LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 274 Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lv 315 (460)
+. .-...|+|+.+- .... +....+++++.+.++|+..++
T Consensus 80 ~~-~~~~aDlVieav-~e~~-~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 80 YE-SLSDADFIVEAV-PEKL-DLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH-HhCCCCEEEEcC-cCcH-HHHHHHHHHHHhhCCCCeEEE
Confidence 11 113468888652 1111 123467888888888887654
No 441
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=26.85 E-value=6e+02 Score=24.71 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=56.4
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeeccc----CC--CCCCCCccEEEEccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR----QL--PYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~----~L--p~~~~sFDlVvs~~~ 289 (460)
.+||=.|+ +.|..+..+++... ..++.++.+++..+.+++.+....+...+.. .+ ......+|+++....
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 219 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVG 219 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCc
Confidence 56777764 56777777776522 3444577788888888766653333211100 00 012356899886421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.++.+.|+++|.++....
T Consensus 220 --------~~~~~~~~~~l~~~g~~i~~~~ 241 (334)
T PTZ00354 220 --------GSYLSETAEVLAVDGKWIVYGF 241 (334)
T ss_pred --------hHHHHHHHHHhccCCeEEEEec
Confidence 2367888999999999987653
No 442
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=26.74 E-value=4.2e+02 Score=26.19 Aligned_cols=92 Identities=23% Similarity=0.220 Sum_probs=54.3
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeE-EEEeeCCHHHHHHHHHcCCCeEEEeec------ccCCCCCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFI------SRQLPYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~-v~giD~s~~~l~~A~~rgl~~~~~~~d------~~~Lp~~~~sFDlVvs~~~ 289 (460)
.+||=.|+| .|..+..+++... .. ++.++.+++..+.+++.+....+..-+ ...+ .....+|+|+-...
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~vld~~~ 243 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVVIVATG 243 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEEEECCC
Confidence 566666764 4555555665522 34 677788888877776656532221100 0011 12345899885421
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|+++|.++....
T Consensus 244 ------~-~~~~~~~~~~l~~~g~~v~~~~ 266 (343)
T cd08235 244 ------S-PEAQAQALELVRKGGRILFFGG 266 (343)
T ss_pred ------C-hHHHHHHHHHhhcCCEEEEEec
Confidence 1 1367788899999999987654
No 443
>PLN02256 arogenate dehydrogenase
Probab=26.73 E-value=2.8e+02 Score=27.98 Aligned_cols=83 Identities=16% Similarity=0.029 Sum_probs=44.8
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccc
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~ 295 (460)
.+|.=||+|. |.++..+.+.| .+++++|.+.. .+.+.+.+... +. +..++. ....|+|+..- .. .
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~~~-~~~a~~~gv~~-~~--~~~e~~--~~~aDvVilav---p~-~ 103 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRSDY-SDIAAELGVSF-FR--DPDDFC--EEHPDVVLLCT---SI-L 103 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECccH-HHHHHHcCCee-eC--CHHHHh--hCCCCEEEEec---CH-H
Confidence 5788888773 44555555554 47888888864 35555445421 11 111111 13468888652 11 2
Q ss_pred cHHHHHHHH-HHhcCCCcE
Q 012624 296 KEGIFLIEA-DRLLKPGGY 313 (460)
Q Consensus 296 d~~~~L~ei-~RvLkPGG~ 313 (460)
....++.++ ...++||..
T Consensus 104 ~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 104 STEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred HHHHHHHhhhhhccCCCCE
Confidence 234466666 455777753
No 444
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=26.45 E-value=3.6e+02 Score=26.99 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=50.1
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-------ccCCCCCCCCccEEEEcc
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-------SRQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-------~~~Lp~~~~sFDlVvs~~ 288 (460)
.+|+=||+|. |.++..|++.|. ...+.+.+. . +..++.++.......+ ....+-....||+|+..-
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav 80 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-Y---EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL 80 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-H---HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe
Confidence 6788999884 456677776663 244444443 1 2233444432211110 000111235799998752
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 289 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
-.. +...++..+...++|++.++....
T Consensus 81 --K~~--~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 81 --KTT--ANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred --cCC--ChHhHHHHHhhhcCCCCEEEEecC
Confidence 222 234577888888999988766544
No 445
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.10 E-value=2e+02 Score=29.43 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=54.5
Q ss_pred CCeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----------CCCeEE--Eeec-ccCCCCCCCC
Q 012624 217 VQSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----------GLPAMI--GNFI-SRQLPYPSLS 280 (460)
Q Consensus 217 ~~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----------gl~~~~--~~~d-~~~Lp~~~~s 280 (460)
.++|-=||+|+ ..++..++..| ..|+.+|.+++.++.++++ +....- ..+. ...+.-.-..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 46788889984 45667777776 6888999998877654331 211000 0000 0111000134
Q ss_pred ccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 281 FDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 281 FDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
-|+|+-+- .... +-...++.++.+.++|+..|.-++.
T Consensus 84 aDlViEav-pE~l-~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 84 ADFIQESA-PERE-ALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred CCEEEECC-cCCH-HHHHHHHHHHHHhCCCCeEEEECCC
Confidence 57777541 2222 2223588999999999985554433
No 446
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=26.05 E-value=4.4e+02 Score=26.05 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=57.3
Q ss_pred CeEEEeCCC--CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc---cCCC--CCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQLP--YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG--tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~---~~Lp--~~~~sFDlVvs~~~l 290 (460)
.+||=.|+| .|..+..+++... .+++.+..+++..+.+++.+....+..-+. ..+. ...+.+|+|+....
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~- 243 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAV- 243 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCC-
Confidence 677777765 6777777777632 477888888887777765554322211100 0000 12346898884211
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|+++|.++....
T Consensus 244 -----~-~~~~~~~~~~l~~~g~~v~~g~ 266 (341)
T cd08297 244 -----S-AAAYEQALDYLRPGGTLVCVGL 266 (341)
T ss_pred -----c-hHHHHHHHHHhhcCCEEEEecC
Confidence 1 2367788899999999998754
No 447
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=25.96 E-value=4.9 Score=32.69 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=7.0
Q ss_pred CCCchhHHHHHHHHHHHHHH
Q 012624 15 RGPPLSWLLLCFLSIVALIA 34 (460)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (460)
||.+.+|+.|+++++|||++
T Consensus 61 ~rkKrrwlwLlikl~lV~av 80 (81)
T PF14812_consen 61 PRKKRRWLWLLIKLFLVFAV 80 (81)
T ss_dssp ----------TTTTHCCHCC
T ss_pred ccccchhHHHHHHHHHHhee
Confidence 78888999998887777543
No 448
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=25.88 E-value=2.3e+02 Score=28.30 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=48.1
Q ss_pred EEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 220 VLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 220 VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
|-=||+|. +.++..|++.+ .+|.++|.+++..+...+.+.... . +..++.-.-..-|+|++.- .. ...
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~g~~~~-~--s~~~~~~~~~~~dvIi~~v---p~-~~~ 72 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKEDRTTGV-A--NLRELSQRLSAPRVVWVMV---PH-GIV 72 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCccc-C--CHHHHHhhcCCCCEEEEEc---Cc-hHH
Confidence 44567764 23555666655 567889999988887766543221 1 1111110012358887652 11 133
Q ss_pred HHHHHHHHHhcCCCcEE
Q 012624 298 GIFLIEADRLLKPGGYF 314 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~l 314 (460)
..++.++...|++|-.+
T Consensus 73 ~~v~~~l~~~l~~g~iv 89 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIV 89 (298)
T ss_pred HHHHHHHHhhCCCCCEE
Confidence 45778888888887544
No 449
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=25.61 E-value=2.3e+02 Score=31.65 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=39.3
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEcc
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~ 288 (460)
.+|| +-||+|.-+..+.+.. .-+..+++|+++++.+.+..+.+-..+.+|+|+++.
T Consensus 507 mKIL-vaCGsGiGTStmva~k--------------Ikk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 507 VRIL-AVCGQGQGSSMMMKMK--------------IKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred cEEE-EECCCCchHHHHHHHH--------------HHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 5676 6688887776665542 223556778888877777777775566799999874
No 450
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=25.50 E-value=4.8e+02 Score=26.83 Aligned_cols=95 Identities=17% Similarity=0.030 Sum_probs=54.5
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
++||=+|--...+...|.... .++...+.+..+ ......+....+... .. .+ ....||+|+.... --....
T Consensus 21 ~~~l~~~~~~d~~~~~l~~~~---~~~~~~~~~~~~-~~~~~~~~~~~f~~~-~~-~~-~~~~~d~~~~~~p--k~k~~~ 91 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDAAS---VRVHTQQFHHWQ-VLSRQMGDNARFSLV-AT-AE-DVADCDTLIYYWP--KNKQEA 91 (342)
T ss_pred CcEEEEcCcchhhHHhhhccc---eEEehhhhHHHH-HHHhhcCCceEeccc-cC-Cc-cCCCCCEEEEECC--CCHHHH
Confidence 578989888888887775221 234443443321 222222444444411 11 11 1357999886421 111233
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 298 GIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+..|.++.+.|+|||.+++...+.
T Consensus 92 ~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 92 QFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred HHHHHHHHHhCCCCCEEEEEEecc
Confidence 457899999999999999998754
No 451
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=25.41 E-value=2.6e+02 Score=30.37 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=66.6
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-------CCCeEEEee--cccC---CCCCCCCccEEE
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-------GLPAMIGNF--ISRQ---LPYPSLSFDMVH 285 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-------gl~~~~~~~--d~~~---Lp~~~~sFDlVv 285 (460)
..+|=+|-|.|.+...+... .....++++++.+.|++.|.+. ...+.+.++ ..++ .--.+..||++.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~-~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMS-LPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred CcEEEEecCCCccccceeee-cCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 56888888889998887665 3336889999999999887654 122223222 0111 112456789887
Q ss_pred Ec----ccccccc-ccH----HHHHHHHHHhcCCCcEEEEEeCCCCC
Q 012624 286 CA----QCGIIWD-KKE----GIFLIEADRLLKPGGYFVLTSPESKP 323 (460)
Q Consensus 286 s~----~~l~~~~-~d~----~~~L~ei~RvLkPGG~lvl~~~~~~~ 323 (460)
.- . .+... +.+ ..+|..+..+|.|.|.|++-....+.
T Consensus 376 ~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 376 VDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 52 2 22221 111 24788899999999999887765544
No 452
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=25.23 E-value=6.6e+02 Score=24.66 Aligned_cols=101 Identities=10% Similarity=0.006 Sum_probs=55.4
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHc--------CCCeEEEeeccc-CC-------CCCCCC
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--------GLPAMIGNFISR-QL-------PYPSLS 280 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r--------gl~~~~~~~d~~-~L-------p~~~~s 280 (460)
...|+.+|||.=+-+..+... ....+.-+|..+ .++.-++. .....+...|.. .+ .|..+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC--CCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 367999999998888777432 124566667544 33322111 112333333332 11 121222
Q ss_pred ccEEEEcccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012624 281 FDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 281 FDlVvs~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~~~ 320 (460)
--++++-.++..+. +....+|+.+.+...||+.+++....
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 23445444333443 23446899999888899998887543
No 453
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=24.79 E-value=1.6e+02 Score=30.98 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHccCCCchhhccCCCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHH
Q 012624 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA 257 (460)
Q Consensus 199 ~i~~~l~~~~~~~~~~~~~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A 257 (460)
.-.+.+...++ .+||-|..|......+|.+ ++ .+|+++|.++.|+...
T Consensus 26 vD~~aL~i~~~--------d~vl~ItSaG~N~L~yL~~-~P--~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 26 VDMEALNIGPD--------DRVLTITSAGCNALDYLLA-GP--KRIHAVDLNPAQNALL 73 (380)
T ss_pred HHHHHhCCCCC--------CeEEEEccCCchHHHHHhc-CC--ceEEEEeCCHHHHHHH
Confidence 34456666665 7999998776666666544 44 6899999999997654
No 454
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=24.57 E-value=1.7e+02 Score=30.63 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=64.2
Q ss_pred CCeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCC-------eEEEeecc------------------
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-------AMIGNFIS------------------ 271 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~-------~~~~~~d~------------------ 271 (460)
..++||.||+.+.....+++.. ...+--|+++..+.+..+..+... ..+..+|.
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~-rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIY-RVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHh-cccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 4689999999999988888763 225566778888877766544111 01111110
Q ss_pred -------c----CCCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 272 -------R----QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 272 -------~----~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
+ .-+++..++|. ..+..|| ++-..++......++|+|.+.+.+...
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~-~~~~~~f~~~~~~~~~~~~v~~~e~~~ 316 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHW-QDKSALFRGRVATLKPGGKVLILEYIR 316 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeec-ccccHHHHhHhhccCcCceEEehhhcC
Confidence 0 01134455666 4555666 455568888999999999999987654
No 455
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=24.51 E-value=6.1e+02 Score=24.03 Aligned_cols=90 Identities=23% Similarity=0.243 Sum_probs=50.9
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCC--CCCCCCccEEEEccccccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL--PYPSLSFDMVHCAQCGIIW 293 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~L--p~~~~sFDlVvs~~~l~~~ 293 (460)
.+||=.|+ +.|..+..+++... ..++.++.++ ..+.+++.+....+... .... ....+.+|+++....
T Consensus 146 ~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~d~v~~~~~---- 217 (309)
T cd05289 146 QTVLIHGAAGGVGSFAVQLAKARG--ARVIATASAA-NADFLRSLGADEVIDYT-KGDFERAAAPGGVDAVLDTVG---- 217 (309)
T ss_pred CEEEEecCCchHHHHHHHHHHHcC--CEEEEEecch-hHHHHHHcCCCEEEeCC-CCchhhccCCCCceEEEECCc----
Confidence 67777775 34555555555422 4556666555 66666555542222211 1111 123346888875421
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 294 ~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ..+.++.+.|+++|.++....
T Consensus 218 --~--~~~~~~~~~l~~~g~~v~~g~ 239 (309)
T cd05289 218 --G--ETLARSLALVKPGGRLVSIAG 239 (309)
T ss_pred --h--HHHHHHHHHHhcCcEEEEEcC
Confidence 1 156778899999999987654
No 456
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=24.21 E-value=2.7e+02 Score=29.33 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=53.4
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEee--------cccCCC--CCCCCccEEE
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNF--------ISRQLP--YPSLSFDMVH 285 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~--------d~~~Lp--~~~~sFDlVv 285 (460)
.+|-=||.|. +.++..|++.| .+|+++|.+++.++.......++.-... ....+. .....-|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 4566778774 34666777776 5789999999988864322222110000 000000 0112468877
Q ss_pred Eccccccc----c---ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 286 CAQCGIIW----D---KKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 286 s~~~l~~~----~---~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
..-- -.. . .....+++++.+.|++|-.++....
T Consensus 81 i~vp-tp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 81 IAVP-TPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred EEcC-CCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 6521 110 0 1223467888889999887776544
No 457
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=24.14 E-value=1.8e+02 Score=29.81 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=31.2
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEeeCCHHHHHHHH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~ 258 (460)
.+|.-||.|.-....+++..- .+++.+|+++.++...+
T Consensus 65 hrivtigSGGcn~L~ylsr~P---a~id~VDlN~ahiAln~ 102 (414)
T COG5379 65 HRIVTIGSGGCNMLAYLSRAP---ARIDVVDLNPAHIALNR 102 (414)
T ss_pred cEEEEecCCcchHHHHhhcCC---ceeEEEeCCHHHHHHHH
Confidence 789999999888888887653 68899999999887543
No 458
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=23.91 E-value=73 Score=26.03 Aligned_cols=53 Identities=21% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhccC-cccccccccCC-CCccchhhHHHHHHHHHhHHhhh
Q 012624 21 WLLLCFLSIVALIAVLGSST-SNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELR 74 (460)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 74 (460)
|+++|+.++++-+|+|..-- ++.--++..+. -..+++.|+|.+ ++-.+|.+++
T Consensus 19 ~llvc~~~liv~~AlL~~IqLC~~cc~~~n~~v~~P~~~vY~~~~-~~Yk~ym~i~ 73 (82)
T PF02723_consen 19 WLLVCLVVLIVCIALLQLIQLCFQCCRLCNTTVYKPVIYVYNRGR-NAYKSYMQID 73 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceEecccHHHHHhhH-HHHHHHHhCC
Confidence 45555555555555544320 00001222222 356778899888 6667777666
No 459
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=23.19 E-value=3.8e+02 Score=26.41 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=54.4
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC----CCCCCCCccEEEEcccccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ----LPYPSLSFDMVHCAQCGII 292 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~----Lp~~~~sFDlVvs~~~l~~ 292 (460)
.+||=.|+| .|..+..+++.. ....++.++.+++..+.+++.+....+...+... +--..+.+|.++-.. .
T Consensus 164 ~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~-~-- 239 (338)
T PRK09422 164 QWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTA-V-- 239 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeC-C--
Confidence 677777754 345556666631 1257888889999999887767543322111001 000012467443221 1
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 293 ~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.+..+.|+++|.++....
T Consensus 240 ---~-~~~~~~~~~~l~~~G~~v~~g~ 262 (338)
T PRK09422 240 ---A-KAAFNQAVDAVRAGGRVVAVGL 262 (338)
T ss_pred ---C-HHHHHHHHHhccCCCEEEEEee
Confidence 1 2368889999999999997654
No 460
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a heparin-binding domain found at the N-terminal of the extracellular domain, which is itself found at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The core of the heparin-binding domain has an unusual disulphide-rich fold, consisting of a beta-x-alpha-beta-loop-beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 1MWP_A 2FKL_A 1OWT_A.
Probab=22.88 E-value=55 Score=27.87 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=31.0
Q ss_pred CCCCCCCccccccccCcccchhhhhhhhhHHHHhhhccEEEEEEeeeEEEeeeeeee
Q 012624 399 TNSKRWISIQNRSSGSQLSSAELEVHGKYCFKIIFSQCIVLVVLHAVCVLIPYWCVV 455 (460)
Q Consensus 399 ~~~~~W~~~~~~~~~~~l~~~~~g~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (460)
+..++|-+|+.++..---...|+.-|.+-..--+ |..+|||-+ -.+.|.-||-.
T Consensus 18 ~~~G~W~~Dp~~~~~C~~~k~eIL~YCrkvYP~l--~ItnVvea~-~~v~i~~WC~~ 71 (102)
T PF02177_consen 18 LQTGRWEPDPSGSASCLKDKEEILKYCRKVYPEL--QITNVVEAS-QPVTISNWCKK 71 (102)
T ss_dssp TTTSSEEE-TTS--B---SHHHHHHHHHHHSTTS---EEEEEE-S-S-EEE--EEET
T ss_pred ccCCceeeCCCCCccccCChHHHHHHHHHhCCCC--ceeEEEECC-cceeccccccC
Confidence 5789999999987666667778888877554322 455666655 67888888853
No 461
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=22.66 E-value=4.6e+02 Score=25.38 Aligned_cols=84 Identities=13% Similarity=0.013 Sum_probs=46.9
Q ss_pred hHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-------ccCCCCCCCCccEEEEccccccccccHHHHH
Q 012624 229 SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-------SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFL 301 (460)
Q Consensus 229 ~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-------~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L 301 (460)
.++..|++.| .+|+.++-+ +.++..++.|+.+.-...+ ...-+-+...+|+|+..- -.. +...++
T Consensus 5 ~~a~~L~~~G---~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~v--Ks~--~~~~~l 76 (293)
T TIGR00745 5 LYGAYLARAG---HDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITV--KAY--QTEEAA 76 (293)
T ss_pred HHHHHHHhCC---CcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEec--cch--hHHHHH
Confidence 4666676665 355666654 4455555556543321111 111111134799988752 222 345688
Q ss_pred HHHHHhcCCCcEEEEEeCC
Q 012624 302 IEADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 302 ~ei~RvLkPGG~lvl~~~~ 320 (460)
..+...+.++..+++....
T Consensus 77 ~~l~~~l~~~~~iv~~qNG 95 (293)
T TIGR00745 77 ALLLPLIGKNTKVLFLQNG 95 (293)
T ss_pred HHhHhhcCCCCEEEEccCC
Confidence 8999999998887765443
No 462
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=22.20 E-value=2.8e+02 Score=27.43 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=54.3
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec-----ccCCCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-----SRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d-----~~~Lp~~~~sFDlVvs~~~l 290 (460)
.+||=.|+| .|..+..+++. |. ..++.++.+++..+.+++.+....+..-+ ..++ .+...+|+|+..-.
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~~dvvld~~g- 244 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTP--ATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVREL-TGGRGADAVIDFVG- 244 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHH-hCCCCCCEEEEcCC-
Confidence 677777744 23344444544 31 46777788888888776666533222110 0111 12346899886421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ...+.++.+.|+++|.++....
T Consensus 245 -----~-~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 245 -----S-DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 1 2367888999999999997764
No 463
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=22.15 E-value=2.1e+02 Score=28.60 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=45.6
Q ss_pred EEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccH
Q 012624 220 VLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (460)
Q Consensus 220 VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~ 297 (460)
|-=||+|. ..++..|++.+ ..++.+|.+++..+.+.+.+... . .+.+++.-....-|+|+..- ...+..
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr~~~~~~~~~~~g~~~--~-~s~~~~~~~~~~advVi~~v---p~~~~~ 73 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDG---HEVVGYDVNQEAVDVAGKLGITA--R-HSLEELVSKLEAPRTIWVMV---PAGEVT 73 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHCCCee--c-CCHHHHHHhCCCCCEEEEEe---cCchHH
Confidence 33456553 23555555555 46778899988777665555321 1 01111110011247776542 111233
Q ss_pred HHHHHHHHHhcCCCcEEEEE
Q 012624 298 GIFLIEADRLLKPGGYFVLT 317 (460)
Q Consensus 298 ~~~L~ei~RvLkPGG~lvl~ 317 (460)
..++.++...+++|-.++-.
T Consensus 74 ~~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred HHHHHHHhccCCCCCEEEEC
Confidence 45667777778877655544
No 464
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.12 E-value=2.8e+02 Score=26.65 Aligned_cols=66 Identities=17% Similarity=0.049 Sum_probs=38.6
Q ss_pred eEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC----CCCCCccEEEEc
Q 012624 219 SVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP----YPSLSFDMVHCA 287 (460)
Q Consensus 219 ~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp----~~~~sFDlVvs~ 287 (460)
+++=+|||. +..+..|.+.| ..++.+|.+++-++.............+|..... ..-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG---HNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC---CceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 466677773 23455555555 5789999999988774443233333333332211 223569999875
No 465
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=22.09 E-value=1.6e+02 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.0
Q ss_pred CeEEEeCCCCchHHHHHHhccCceeEEEEee
Q 012624 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYE 248 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~~~~~~v~giD 248 (460)
.-|.+||.|.|..++.+.+.+.....++-.|
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D 82 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKD 82 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeec
Confidence 5799999999999999998876434444444
No 466
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.99 E-value=3.5e+02 Score=27.84 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=32.5
Q ss_pred CeEEEeCCCCchHHHHHHhcc-CceeEEEEeeCCHHHHHHH
Q 012624 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLA 257 (460)
Q Consensus 218 ~~VLDIGCGtG~~a~~La~~~-~~~~~v~giD~s~~~l~~A 257 (460)
..|+.+|||.-.....|.+.+ .....++-+|.++......
T Consensus 89 ~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 89 KQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred eEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 689999999999999998875 4557788889888766655
No 467
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.82 E-value=7.1e+02 Score=23.81 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=53.3
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC------CCCCCccEEEEccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp------~~~~sFDlVvs~~~ 289 (460)
.+||=.|+ |.|..+..+++.. ...++.++.++...+.+++.+....+. .+..... .....+|+++....
T Consensus 146 ~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~~ 222 (328)
T cd08268 146 DSVLITAASSSVGLAAIQIANAA--GATVIATTRTSEKRDALLALGAAHVIV-TDEEDLVAEVLRITGGKGVDVVFDPVG 222 (328)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHcCCCEEEe-cCCccHHHHHHHHhCCCCceEEEECCc
Confidence 57887776 3444554455442 256777788887777776656432221 1111110 12235898886532
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 290 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ..+.++.+.++++|.++....
T Consensus 223 ------~--~~~~~~~~~l~~~g~~v~~g~ 244 (328)
T cd08268 223 ------G--PQFAKLADALAPGGTLVVYGA 244 (328)
T ss_pred ------h--HhHHHHHHhhccCCEEEEEEe
Confidence 1 246677889999999997654
No 468
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=21.66 E-value=6.8e+02 Score=25.49 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=52.3
Q ss_pred CeEEEeCCC-CchHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeeccc-----C-CCCCCCCccEEEEccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR-----Q-LPYPSLSFDMVHCAQC 289 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~-----~-Lp~~~~sFDlVvs~~~ 289 (460)
.+||=+|+| .|..+..+++. |. ..++.+|.++...+.+++.|....+...+.. . .....+.+|+|+-.-.
T Consensus 192 ~~VlV~G~g~vG~~~~~~a~~~G~--~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g 269 (373)
T cd08299 192 STCAVFGLGGVGLSAIMGCKAAGA--SRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIG 269 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEECCC
Confidence 577777764 23344444444 32 2678889899999998776754323211100 0 0011245898876421
Q ss_pred cccccccHHHHHHH-HHHhcCCCcEEEEEeCC
Q 012624 290 GIIWDKKEGIFLIE-ADRLLKPGGYFVLTSPE 320 (460)
Q Consensus 290 l~~~~~d~~~~L~e-i~RvLkPGG~lvl~~~~ 320 (460)
. ...+.+ +...+++||.++.....
T Consensus 270 ------~-~~~~~~~~~~~~~~~G~~v~~g~~ 294 (373)
T cd08299 270 ------R-LDTMKAALASCHEGYGVSVIVGVP 294 (373)
T ss_pred ------C-cHHHHHHHHhhccCCCEEEEEccC
Confidence 1 224555 44456789999888653
No 469
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=21.55 E-value=36 Score=28.57 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.4
Q ss_pred EEEeCCCCchHHHHHHh
Q 012624 220 VLDVGCGFGSFGAHLVS 236 (460)
Q Consensus 220 VLDIGCGtG~~a~~La~ 236 (460)
-+|||||.|.....-..
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 47999999986554443
No 470
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.25 E-value=6.3e+02 Score=24.82 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=50.6
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----------CC-C----------eEEEeecccC
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----------GL-P----------AMIGNFISRQ 273 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----------gl-~----------~~~~~~d~~~ 273 (460)
.+|.=||+|. +.++..++..| ..|+.+|.+++.++.+.++ +. + +... .+.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH
Confidence 5677788874 23556666665 4788899999887765431 21 0 1111 11111
Q ss_pred CCCCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEE
Q 012624 274 LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFV 315 (460)
Q Consensus 274 Lp~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lv 315 (460)
-...|+|+..- .... .-...+++++...++|+..++
T Consensus 81 ----~~~aD~Vieav-pe~~-~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 ----LADCDLVIEAA-TEDE-TVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred ----hcCCCEEEEcC-cCCH-HHHHHHHHHHHhhCCCCcEEE
Confidence 13468888652 1111 112357888999999988765
No 471
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.00 E-value=4.3e+02 Score=26.25 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=27.6
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHH
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~ 259 (460)
.+|.=||+|. +.++..++..| ..|+.+|.+++.++.+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHH
Confidence 5677788884 34556666655 478889999988776654
No 472
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.00 E-value=1.4e+02 Score=29.59 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=50.7
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-------CCC---eE----------EEeecccCCC
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-------GLP---AM----------IGNFISRQLP 275 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-------gl~---~~----------~~~~d~~~Lp 275 (460)
++|.=||+|. +.++..+++.| ..|+.+|.+++.++.+.++ +.. +. +. . ...+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~-~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-Y-SLDLK 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-E-eCcHH
Confidence 4577788873 33555666665 5788899999988876532 110 00 00 0 11111
Q ss_pred CCCCCccEEEEccccccccccHHHHHHHHHHhcCCCcEEEE
Q 012624 276 YPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316 (460)
Q Consensus 276 ~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl 316 (460)
-.-..-|+|+.+- .... +-...++.++.+.++|+..+..
T Consensus 77 ~~~~~aD~Vi~av-pe~~-~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 77 AAVADADLVIEAV-PEKL-ELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred HhhcCCCEEEEec-cCCH-HHHHHHHHHHHhhCCCCcEEEE
Confidence 1113468888652 1111 1123577888899998876644
No 473
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=20.84 E-value=7.7e+02 Score=23.83 Aligned_cols=92 Identities=20% Similarity=0.119 Sum_probs=56.4
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc---cCC-C-CCCCCccEEEEcccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---RQL-P-YPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~---~~L-p-~~~~sFDlVvs~~~l 290 (460)
.+||=.|+ +.|..+..+++... ..++.++.+++..+.+++.+....+...+. +.+ . .....+|+|+....
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g- 220 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVG- 220 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCC-
Confidence 56777774 45666666666522 467888888888888876665332221110 000 0 12346999986521
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
. ....+..+.|+++|.++....
T Consensus 221 -----~--~~~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 221 -----G--AIGRAALALLAPGGRFLTYGW 242 (324)
T ss_pred -----h--HhHHHHHHHhccCcEEEEEec
Confidence 1 135788899999999997754
No 474
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=20.68 E-value=7.7e+02 Score=25.78 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=59.9
Q ss_pred CeEEEeCCCC-chHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccC-----CCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-----LPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~-----Lp~~~~sFDlVvs~~~l~ 291 (460)
.+|.=+|||. |..+..-+.. .-...++++|+++.-++.|++-|..-.+...+..+ ....++-.|.++-.-
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~-agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~--- 262 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKA-AGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV--- 262 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHH-cCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEcc---
Confidence 6888889874 4444443433 22368999999999999999887654433221100 012233556654321
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~~~ 321 (460)
... ..++.....+.++|..++..-..
T Consensus 263 ---G~~-~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 263 ---GNV-EVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred ---CCH-HHHHHHHHHHhcCCeEEEEecCC
Confidence 122 37888888888899999887654
No 475
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.66 E-value=3.5e+02 Score=26.90 Aligned_cols=93 Identities=18% Similarity=0.078 Sum_probs=53.5
Q ss_pred CeEEEeCCCC--chHHHHHHhccCceeEEEEeeCCHHHHHHHHHc-----------CCC-e--------EE-EeecccCC
Q 012624 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----------GLP-A--------MI-GNFISRQL 274 (460)
Q Consensus 218 ~~VLDIGCGt--G~~a~~La~~~~~~~~v~giD~s~~~l~~A~~r-----------gl~-~--------~~-~~~d~~~L 274 (460)
.+|-=||+|+ +.++..++..| ..|+.+|.+++.++.+.++ +.- . .+ ...+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG---VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 5677889884 34666666666 5789999999988774432 211 0 00 0011111
Q ss_pred CCCCCCccEEEEccccccccccHHHHHHHHHHhc-CCCcEEEEEeC
Q 012624 275 PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLL-KPGGYFVLTSP 319 (460)
Q Consensus 275 p~~~~sFDlVvs~~~l~~~~~d~~~~L~ei~RvL-kPGG~lvl~~~ 319 (460)
-...|+|+-+- .... +-...++.++.+++ +||..+.-.+.
T Consensus 82 ---~~~~d~ViEav-~E~~-~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 ---FADRQLVIEAV-VEDE-AVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ---hCCCCEEEEec-ccCH-HHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 13468887652 1221 22235788888888 77776665433
No 476
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.58 E-value=6.7e+02 Score=24.76 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=54.6
Q ss_pred CeEEEeCCC-CchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeec------ccCCCCCCCCccEEEEcccc
Q 012624 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI------SRQLPYPSLSFDMVHCAQCG 290 (460)
Q Consensus 218 ~~VLDIGCG-tG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d------~~~Lp~~~~sFDlVvs~~~l 290 (460)
.+||=.|+| .|..+..+++.... ..+++++.++...+.+++.+....+..-+ ..++. +...+|+++..-
T Consensus 170 ~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~-~~~~~d~il~~~-- 245 (345)
T cd08287 170 STVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELT-GGVGADAVLECV-- 245 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCCCCEEEECC--
Confidence 455557764 24444555555221 24788888887777777766533322110 01111 234588888542
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 291 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
.. ...+..+.+.|+++|.++....
T Consensus 246 ----g~-~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 246 ----GT-QESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred ----CC-HHHHHHHHHhhccCCEEEEecc
Confidence 11 3478889999999999988764
No 477
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=20.55 E-value=4.8e+02 Score=25.68 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=39.7
Q ss_pred HHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCCCCCCCccEEEEccccccccccHHHHH---HHHHH
Q 012624 230 FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFL---IEADR 306 (460)
Q Consensus 230 ~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp~~~~sFDlVvs~~~l~~~~~d~~~~L---~ei~R 306 (460)
++..|++.| .++..+|.+++..+...+.+.... .+..+. -..-|+|+..- .-......++ .++..
T Consensus 11 mA~~L~~~G---~~V~v~dr~~~~~~~l~~~g~~~~---~s~~~~---~~~advVil~v---p~~~~~~~v~~g~~~l~~ 78 (288)
T TIGR01692 11 MAANLLKAG---HPVRVFDLFPDAVEEAVAAGAQAA---ASPAEA---AEGADRVITML---PAGQHVISVYSGDEGILP 78 (288)
T ss_pred HHHHHHhCC---CeEEEEeCCHHHHHHHHHcCCeec---CCHHHH---HhcCCEEEEeC---CChHHHHHHHcCcchHhh
Confidence 445555555 478889999988877766554211 011111 12358888652 1112223344 45666
Q ss_pred hcCCCcEEEE
Q 012624 307 LLKPGGYFVL 316 (460)
Q Consensus 307 vLkPGG~lvl 316 (460)
.+++|-.++-
T Consensus 79 ~~~~g~~vid 88 (288)
T TIGR01692 79 KVAKGSLLID 88 (288)
T ss_pred cCCCCCEEEE
Confidence 6777654443
No 478
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.47 E-value=2e+02 Score=30.14 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=40.4
Q ss_pred CCeEEEeCCCCchHHHHHHhcc-CceeEEEEeeCCHHHHHHHHHcCCCeEEEeecccCCC----CCCCCccEEEEc
Q 012624 217 VQSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP----YPSLSFDMVHCA 287 (460)
Q Consensus 217 ~~~VLDIGCGtG~~a~~La~~~-~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~~~Lp----~~~~sFDlVvs~ 287 (460)
..+++=+|+ |.++..+++.- -....++.+|.+++.++..++.+....+..+|..+.. ..-..+|+|++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 367888887 55555544430 0125788999999998887776433333333332211 123468888765
No 479
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=20.40 E-value=4.9e+02 Score=25.26 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=56.0
Q ss_pred CeEEEeCC--CCchHHHHHHhccCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc----cCCCCCCCCccEEEEccccc
Q 012624 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS----RQLPYPSLSFDMVHCAQCGI 291 (460)
Q Consensus 218 ~~VLDIGC--GtG~~a~~La~~~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~----~~Lp~~~~sFDlVvs~~~l~ 291 (460)
.+||=.|+ +.|..+..+++... ..++.++.+++..+.+++.+....+..-+. ... ...+.+|+|+-...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~~-- 222 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKP-LLKARWAGAIDTVG-- 222 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHH-hcCCCccEEEECCc--
Confidence 46777775 45556666666522 457788888888888877665333221110 000 12345888875421
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012624 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (460)
Q Consensus 292 ~~~~d~~~~L~ei~RvLkPGG~lvl~~~ 319 (460)
...+.+..+.|+++|.++....
T Consensus 223 ------~~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 223 ------GDVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred ------hHHHHHHHHhhcCCCEEEEEec
Confidence 1267888999999999987654
No 480
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=20.19 E-value=8.1e+02 Score=24.70 Aligned_cols=91 Identities=13% Similarity=-0.002 Sum_probs=54.8
Q ss_pred CeEEEeCCCC-chHHHHHHhc-cCceeEEEEeeCCHHHHHHHHHcCCCeEEEeecc--------cCCCCCCCCccEEEEc
Q 012624 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--------RQLPYPSLSFDMVHCA 287 (460)
Q Consensus 218 ~~VLDIGCGt-G~~a~~La~~-~~~~~~v~giD~s~~~l~~A~~rgl~~~~~~~d~--------~~Lp~~~~sFDlVvs~ 287 (460)
.+||=.|+|. |..+..+++. |. ..+++++.+++..+.+.+.|....+...+. .++ . .+.+|+|+-.
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~-~-~~~~d~vid~ 260 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAGA--SRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEM-T-DGGVDYAFEV 260 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHH-h-CCCCcEEEEC
Confidence 5676677642 3344444544 32 247788888888888877675432221110 111 1 3468988854
Q ss_pred cccccccccHHHHHHHHHHhcC-CCcEEEEEeC
Q 012624 288 QCGIIWDKKEGIFLIEADRLLK-PGGYFVLTSP 319 (460)
Q Consensus 288 ~~l~~~~~d~~~~L~ei~RvLk-PGG~lvl~~~ 319 (460)
.. . ...+.+..+.|+ ++|.++....
T Consensus 261 ~g------~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 261 IG------S-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CC------C-HHHHHHHHHHhccCCCEEEEEec
Confidence 21 1 236778899999 9999998764
No 481
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=20.03 E-value=3.5e+02 Score=20.43 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q 012624 299 IFLIEADRLLKPGGYFVLTS 318 (460)
Q Consensus 299 ~~L~ei~RvLkPGG~lvl~~ 318 (460)
.-++++.+.++.||.+++..
T Consensus 51 ~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred HHHHHHHHHHHcCCEEEEeC
Confidence 45778888999999999863
Done!