Query 012625
Match_columns 459
No_of_seqs 201 out of 554
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 13:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.6 8.6E-16 3E-20 124.8 5.9 62 44-105 2-63 (79)
2 2yum_A ZZZ3 protein, zinc fing 99.5 5.6E-15 1.9E-19 116.9 6.8 54 58-111 6-65 (75)
3 2cu7_A KIAA1915 protein; nucle 99.5 2.9E-14 1E-18 112.5 8.2 54 58-111 7-60 (72)
4 2iw5_B Protein corest, REST co 99.4 3.1E-13 1E-17 129.4 5.5 63 46-108 119-181 (235)
5 2elk_A SPCC24B10.08C protein; 99.4 6.3E-13 2.2E-17 101.4 6.0 47 60-106 9-57 (58)
6 1x41_A Transcriptional adaptor 99.4 9.1E-13 3.1E-17 100.9 6.2 49 58-106 6-55 (60)
7 1guu_A C-MYB, MYB proto-oncoge 99.3 6.7E-12 2.3E-16 92.8 6.5 47 59-105 2-49 (52)
8 2xag_B REST corepressor 1; ami 99.3 2.4E-12 8.3E-17 133.7 5.5 60 49-108 369-428 (482)
9 2din_A Cell division cycle 5-l 99.2 2.7E-11 9.3E-16 93.8 8.3 57 58-115 7-63 (66)
10 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.7E-11 5.9E-16 98.6 6.7 50 58-107 16-69 (73)
11 1gvd_A MYB proto-oncogene prot 99.2 1.3E-11 4.5E-16 91.3 5.5 47 59-105 2-49 (52)
12 2eqr_A N-COR1, N-COR, nuclear 99.2 2.6E-11 9E-16 93.4 6.8 44 58-101 10-53 (61)
13 2d9a_A B-MYB, MYB-related prot 99.2 2E-11 6.7E-16 92.8 5.8 48 58-105 6-54 (60)
14 2cjj_A Radialis; plant develop 99.2 5.7E-11 2E-15 99.6 7.4 56 59-114 7-66 (93)
15 2ltp_A Nuclear receptor corepr 98.7 6.6E-12 2.3E-16 103.4 0.0 55 56-110 12-66 (89)
16 1w0t_A Telomeric repeat bindin 99.1 1.8E-10 6.3E-15 85.8 6.7 47 60-106 2-51 (53)
17 2dim_A Cell division cycle 5-l 99.1 1.1E-10 3.9E-15 91.2 5.8 48 58-105 7-55 (70)
18 1irz_A ARR10-B; helix-turn-hel 99.1 2E-10 7E-15 91.1 7.1 55 57-111 4-63 (64)
19 1ity_A TRF1; helix-turn-helix, 99.1 2.6E-10 9E-15 89.1 7.3 51 57-107 7-60 (69)
20 3sjm_A Telomeric repeat-bindin 99.0 5.6E-10 1.9E-14 87.3 6.9 48 58-105 9-59 (64)
21 2k9n_A MYB24; R2R3 domain, DNA 99.0 9.1E-10 3.1E-14 92.1 7.0 52 59-110 52-103 (107)
22 2cqq_A RSGI RUH-037, DNAJ homo 98.9 9.9E-10 3.4E-14 88.1 6.4 49 59-108 7-59 (72)
23 2yqk_A Arginine-glutamic acid 98.9 1.2E-09 4E-14 85.1 6.1 43 59-101 8-51 (63)
24 3zqc_A MYB3; transcription-DNA 98.9 8.6E-10 2.9E-14 95.2 5.4 51 58-108 52-102 (131)
25 3osg_A MYB21; transcription-DN 98.9 1.6E-09 5.5E-14 93.1 6.7 51 58-108 60-110 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 98.9 1.1E-09 3.8E-14 90.6 5.3 48 59-106 55-102 (105)
27 3osg_A MYB21; transcription-DN 98.9 2E-09 6.8E-14 92.5 6.4 48 58-105 9-56 (126)
28 1wgx_A KIAA1903 protein; MYB D 98.9 2.4E-09 8.3E-14 86.7 5.9 46 59-104 7-56 (73)
29 1gv2_A C-MYB, MYB proto-oncoge 98.9 2.2E-09 7.4E-14 88.9 5.5 47 59-105 3-50 (105)
30 2crg_A Metastasis associated p 98.9 3.4E-09 1.2E-13 84.2 6.2 44 58-101 6-50 (70)
31 2llk_A Cyclin-D-binding MYB-li 98.8 3.6E-09 1.2E-13 85.2 6.2 47 55-102 18-64 (73)
32 2k9n_A MYB24; R2R3 domain, DNA 98.8 3.5E-09 1.2E-13 88.5 5.9 46 60-105 1-47 (107)
33 3zqc_A MYB3; transcription-DNA 98.8 5.7E-09 1.9E-13 90.1 5.4 46 60-105 2-48 (131)
34 1h8a_C AMV V-MYB, MYB transfor 98.8 3.9E-09 1.3E-13 90.4 4.2 47 59-105 78-124 (128)
35 1h8a_C AMV V-MYB, MYB transfor 98.7 8.1E-09 2.8E-13 88.5 5.7 48 58-105 25-73 (128)
36 2ckx_A NGTRF1, telomere bindin 98.7 4.1E-08 1.4E-12 80.7 6.9 47 62-108 2-53 (83)
37 4a69_C Nuclear receptor corepr 98.6 3.2E-08 1.1E-12 82.7 5.8 44 58-101 41-84 (94)
38 2aje_A Telomere repeat-binding 98.6 5.4E-08 1.8E-12 83.4 6.4 52 56-107 9-65 (105)
39 2juh_A Telomere binding protei 98.6 8.4E-08 2.9E-12 84.1 7.6 55 54-108 11-70 (121)
40 1h89_C C-MYB, MYB proto-oncoge 98.6 2.1E-08 7.1E-13 88.6 3.8 47 59-105 109-155 (159)
41 4eef_G F-HB80.4, designed hema 98.6 5.3E-09 1.8E-13 85.2 -0.1 43 60-102 20-66 (74)
42 2roh_A RTBP1, telomere binding 98.6 1.3E-07 4.5E-12 83.0 8.3 53 56-108 27-84 (122)
43 1h89_C C-MYB, MYB proto-oncoge 98.5 7.4E-08 2.5E-12 85.1 5.6 48 58-105 56-104 (159)
44 1x58_A Hypothetical protein 49 98.4 4.6E-07 1.6E-11 71.7 6.3 46 58-103 6-54 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.1 1.4E-06 4.6E-11 84.4 3.9 49 59-107 7-61 (246)
46 1ofc_X ISWI protein; nuclear p 97.3 0.00029 9.9E-09 69.9 6.3 48 61-108 111-159 (304)
47 1fex_A TRF2-interacting telome 97.1 0.00051 1.8E-08 53.0 5.0 46 60-105 2-57 (59)
48 2xag_B REST corepressor 1; ami 96.8 0.00019 6.4E-09 75.1 0.0 42 60-101 189-230 (482)
49 3hm5_A DNA methyltransferase 1 96.6 0.005 1.7E-07 51.9 7.2 52 60-111 30-86 (93)
50 1ug2_A 2610100B20RIK gene prod 96.5 0.021 7.2E-07 48.5 10.4 51 60-110 33-86 (95)
51 1ofc_X ISWI protein; nuclear p 95.9 0.014 4.8E-07 58.0 7.1 54 59-112 211-280 (304)
52 4b4c_A Chromodomain-helicase-D 95.8 0.013 4.6E-07 53.2 6.2 54 59-112 6-64 (211)
53 2y9y_A Imitation switch protei 95.4 0.018 6E-07 58.8 5.8 48 61-108 124-173 (374)
54 2ebi_A DNA binding protein GT- 94.0 0.083 2.8E-06 42.3 5.5 53 58-110 2-68 (86)
55 2lr8_A CAsp8-associated protei 92.9 0.011 3.7E-07 47.9 0.0 45 61-106 15-62 (70)
56 4b4c_A Chromodomain-helicase-D 93.4 0.24 8.3E-06 44.8 8.1 49 60-109 134-197 (211)
57 4iej_A DNA methyltransferase 1 92.1 0.42 1.4E-05 40.4 7.2 52 60-111 30-86 (93)
58 1ig6_A MRF-2, modulator recogn 89.4 0.18 6.1E-06 42.1 2.6 47 81-132 56-107 (107)
59 1ign_A Protein (RAP1); RAP1,ye 87.4 0.94 3.2E-05 44.1 6.4 27 82-108 174-200 (246)
60 2hzd_A Transcriptional enhance 86.1 0.77 2.6E-05 38.1 4.3 47 58-104 4-71 (82)
61 2xb0_X Chromo domain-containin 85.2 0.72 2.4E-05 45.1 4.4 27 61-87 169-196 (270)
62 2xb0_X Chromo domain-containin 75.3 6.2 0.00021 38.5 7.2 51 60-110 3-58 (270)
63 2y9y_A Imitation switch protei 71.9 6.6 0.00023 40.2 6.7 54 60-113 228-297 (374)
64 2cxy_A BAF250B subunit, HBAF25 71.7 6.9 0.00024 33.5 5.9 34 81-114 74-112 (125)
65 2lm1_A Lysine-specific demethy 65.4 18 0.00063 29.7 7.0 47 68-114 47-104 (107)
66 2li6_A SWI/SNF chromatin-remod 63.1 7.1 0.00024 33.0 4.1 31 81-111 72-102 (116)
67 2jxj_A Histone demethylase jar 62.3 8.9 0.0003 31.0 4.4 33 81-113 59-95 (96)
68 2eqy_A RBP2 like, jumonji, at 60.9 28 0.00096 29.7 7.5 35 81-115 65-103 (122)
69 1kkx_A Transcription regulator 50.9 17 0.00057 31.4 4.5 32 81-112 71-102 (123)
70 2jrz_A Histone demethylase jar 50.3 24 0.00081 29.9 5.3 34 81-114 63-100 (117)
71 1c20_A DEAD ringer protein; DN 46.8 29 0.00099 29.7 5.3 34 81-114 75-113 (128)
72 2kk0_A AT-rich interactive dom 44.9 31 0.0011 30.3 5.4 35 81-115 87-126 (145)
73 2o8x_A Probable RNA polymerase 43.1 57 0.002 23.3 5.8 49 61-111 14-62 (70)
74 2rq5_A Protein jumonji; develo 41.8 25 0.00087 30.3 4.2 30 81-110 65-99 (121)
75 1fse_A GERE; helix-turn-helix 35.2 93 0.0032 22.3 5.9 47 60-109 9-55 (74)
76 3e7l_A Transcriptional regulat 34.5 36 0.0012 25.2 3.5 38 65-111 18-56 (63)
77 3c57_A Two component transcrip 29.3 1.3E+02 0.0043 23.7 6.2 48 61-111 26-73 (95)
78 1x3u_A Transcriptional regulat 29.3 94 0.0032 22.8 5.1 45 62-109 16-60 (79)
79 1ntc_A Protein (nitrogen regul 26.8 50 0.0017 26.2 3.4 30 64-93 49-79 (91)
80 3mzy_A RNA polymerase sigma-H 26.7 1.3E+02 0.0043 24.2 5.9 34 77-111 122-155 (164)
81 1je8_A Nitrate/nitrite respons 24.2 1.4E+02 0.0047 22.9 5.4 49 58-109 17-65 (82)
82 3ulq_B Transcriptional regulat 23.2 1.6E+02 0.0056 23.2 5.8 46 60-108 27-72 (90)
83 1umq_A Photosynthetic apparatu 21.9 66 0.0023 25.8 3.2 31 63-93 38-69 (81)
84 3izc_k 60S ribosomal protein R 20.4 21 0.0007 30.7 -0.1 12 431-442 48-59 (100)
85 4a18_Q RPL36, 60S ribosomal pr 20.3 20 0.00069 30.9 -0.2 12 431-442 49-60 (104)
86 1p4w_A RCSB; solution structur 20.0 2.2E+02 0.0075 23.0 6.0 45 61-108 33-77 (99)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.59 E-value=8.6e-16 Score=124.81 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=56.2
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 44 NDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 44 ~~~~~k~rKPytitk~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
..-+++.++++.....+..||+||+.+||+||++||.+|.+||++||+||+.||+.|+++|+
T Consensus 2 ssg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 2 SSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CCSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred CCcccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 34455788888888899999999999999999999977999999999999999999999884
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.6e-15 Score=116.88 Aligned_cols=54 Identities=37% Similarity=0.673 Sum_probs=49.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC------cchHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 012625 58 KQRERWTEEEHKKFLEALKLFG------RAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yG------rgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
..++.||+||+++|+++|++|| ..|..||++|++||..|||.|+++||.++.+.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999 56999999999999999999999999887543
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.51 E-value=2.9e-14 Score=112.51 Aligned_cols=54 Identities=35% Similarity=0.689 Sum_probs=50.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
.+++.||+||+++|++++++||..|..||.+|++||..||+.|+++||.+..+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999999999999988554
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.37 E-value=3.1e-13 Score=129.42 Aligned_cols=63 Identities=27% Similarity=0.476 Sum_probs=58.2
Q ss_pred CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 46 FAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 46 ~~~k~rKPytitk~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
...+.|+|+.+.+...+||+||+.+|++||.+||++|..||++|||||..||++||.+|+.++
T Consensus 119 ~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 119 GIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 344677799999999999999999999999999999999999999999999999999998774
No 5
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.36 E-value=6.3e-13 Score=101.43 Aligned_cols=47 Identities=28% Similarity=0.562 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-cchHHHHhhcC-CCCHHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFG-RAWRKIEEHVG-TKTAVQIRSHAQKFFS 106 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yG-rgWkkIAe~Vg-TRT~~QVRSHAQKYF~ 106 (459)
++.||+||+.+|++++++|| ..|..||++|| +||+.|||.|+++||.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 56899999999999999999 56999999999 9999999999999985
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=9.1e-13 Score=100.85 Aligned_cols=49 Identities=31% Similarity=0.529 Sum_probs=45.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFFS 106 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVRSHAQKYF~ 106 (459)
..+..||+||+++|++++++||. .|..||++|++||+.|||.|+++||.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 34678999999999999999994 69999999999999999999999975
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.27 E-value=6.7e-12 Score=92.78 Aligned_cols=47 Identities=30% Similarity=0.529 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
+++.||.||+++|++++++||. .|..||.+|++||+.||+.|+++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999 5999999999999999999999886
No 8
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.26 E-value=2.4e-12 Score=133.66 Aligned_cols=60 Identities=28% Similarity=0.536 Sum_probs=55.9
Q ss_pred CCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 49 KPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 49 k~rKPytitk~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
..|.|+.+.+...+||++||.+|++||.+||++|..||++|||||..|||+||++|+.++
T Consensus 369 ~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 369 PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp GGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred cccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 557788888999999999999999999999999999999999999999999999988764
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.7e-11 Score=93.75 Aligned_cols=57 Identities=28% Similarity=0.520 Sum_probs=51.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhCCC
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGC 115 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~~~G~ 115 (459)
..++.||.||+++|+++++.||..|..||.++ .||..|||.|++.|+.+..+...|.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCCCCC
Confidence 45689999999999999999999999999955 5999999999999999988876664
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.21 E-value=1.7e-11 Score=98.63 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----cchHHHHhhcCCCCHHHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFG----RAWRKIEEHVGTKTAVQIRSHAQKFFSK 107 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yG----rgWkkIAe~VgTRT~~QVRSHAQKYF~K 107 (459)
..++.||.+|+.+|++||.+|| ..|.+||++||+||..||+.|++.+..+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4678999999999999999999 4599999999999999999999877543
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.21 E-value=1.3e-11 Score=91.34 Aligned_cols=47 Identities=21% Similarity=0.544 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
.+++||.||+++|++++++||.. |..||.+|++||..|||.|+++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 46899999999999999999985 999999999999999999999885
No 12
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.6e-11 Score=93.44 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHA 101 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHA 101 (459)
+....||+|||++|++||.+||++|..||.+|++||..||+.|+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45679999999999999999999999999999999999998775
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=2e-11 Score=92.82 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=44.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
..++.||.||+++|++++++||. .|..||.+|++||..|||.|+++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 45789999999999999999995 7999999999999999999999885
No 14
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.15 E-value=5.7e-11 Score=99.59 Aligned_cols=56 Identities=20% Similarity=0.498 Sum_probs=51.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc----chHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhCC
Q 012625 59 QRERWTEEEHKKFLEALKLFGR----AWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 114 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGr----gWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~~~G 114 (459)
..+.||.||+.+|++||..||. .|.+||++||+||..||+.|+++++.++..+..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 3568999999999999999974 4999999999999999999999999999888777
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.71 E-value=6.6e-12 Score=103.38 Aligned_cols=55 Identities=27% Similarity=0.346 Sum_probs=50.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 012625 56 ITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110 (459)
Q Consensus 56 itk~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r 110 (459)
....++.||.||+++|++++..||..|..||.+|++||..||+.|+..|+.++..
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 3456789999999999999999999999999999999999999999999887643
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.08 E-value=1.8e-10 Score=85.81 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHhhcC--CCCHHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGR-AWRKIEEHVG--TKTAVQIRSHAQKFFS 106 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~Vg--TRT~~QVRSHAQKYF~ 106 (459)
+++||+||+++++++++.||. .|..||.+++ +||..||+.++..|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 679999999999999999995 6999999999 9999999999988753
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=91.22 Aligned_cols=48 Identities=19% Similarity=0.411 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-cchHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFG-RAWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yG-rgWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
.+++.||.||+++|++++++|| ..|..||.+|++||..|||.|+..|+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 4578999999999999999999 56999999999999999999999875
No 18
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.08 E-value=2e-10 Score=91.08 Aligned_cols=55 Identities=35% Similarity=0.451 Sum_probs=49.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc---hHHHHhhcC--CCCHHHHHHHHHHHHHHHHHh
Q 012625 57 TKQRERWTEEEHKKFLEALKLFGRA---WRKIEEHVG--TKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 57 tk~r~~WT~EEH~lFLeaLe~yGrg---WkkIAe~Vg--TRT~~QVRSHAQKYF~Kl~r~ 111 (459)
.+.+-.||+|.|++|++|++++|.+ |+.|.++++ +.|..||+||.|||+.+++|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 3567899999999999999999965 899998866 679999999999999999864
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.07 E-value=2.6e-10 Score=89.05 Aligned_cols=51 Identities=24% Similarity=0.491 Sum_probs=46.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcC--CCCHHHHHHHHHHHHHH
Q 012625 57 TKQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVG--TKTAVQIRSHAQKFFSK 107 (459)
Q Consensus 57 tk~r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~Vg--TRT~~QVRSHAQKYF~K 107 (459)
.+.++.||.||+++|++++++||. .|..||.+++ +||..|||.++..|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 356789999999999999999995 6999999999 99999999999988654
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.01 E-value=5.6e-10 Score=87.26 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=42.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcC--CCCHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVG--TKTAVQIRSHAQKFF 105 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~Vg--TRT~~QVRSHAQKYF 105 (459)
.++.+||+||+++|++++++||. .|..||++++ +||..|||.++..|.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997 4999999876 999999999998764
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.96 E-value=9.1e-10 Score=92.07 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r 110 (459)
++++||.||+.+|++++..||..|..||.+|++||..||+.|+..+..++.+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 4689999999999999999999999999999999999999999988877654
No 22
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=9.9e-10 Score=88.13 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc----chHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGR----AWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGr----gWkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
....||.||+.+|++||.+|+. .|.+||+++ .||..||+.||+++..++
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 4568999999999999999984 399999999 599999999999886553
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=85.11 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHh-hcCCCCHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRAWRKIEE-HVGTKTAVQIRSHA 101 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrgWkkIAe-~VgTRT~~QVRSHA 101 (459)
....||+||+.+|++||.+||++|..|+. +|++||..||..|+
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 35789999999999999999999999998 69999999998665
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.92 E-value=8.6e-10 Score=95.19 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=46.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
..++.||.||+.+|++++..||..|..||.+|++||..||+.|+..++.+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999998887654
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.91 E-value=1.6e-09 Score=93.07 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=47.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
.+++.||.||+++|++++..||..|..||.+|++||..||+.|+..+..++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999999999998877665
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.90 E-value=1.1e-09 Score=90.57 Aligned_cols=48 Identities=27% Similarity=0.519 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFS 106 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~ 106 (459)
++++||.||+.+|++++..||..|..||.+|++||..||+.|+..+..
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999986643
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.88 E-value=2e-09 Score=92.52 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=45.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
..++.||+||+++|+++++.||.+|..||+++++||..|||.|+..|+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 567899999999999999999999999999999999999999999885
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=2.4e-09 Score=86.71 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc----hHHHHhhcCCCCHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRA----WRKIEEHVGTKTAVQIRSHAQKF 104 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrg----WkkIAe~VgTRT~~QVRSHAQKY 104 (459)
....||.+|+.+|++||..|+++ |.+||++||+||+.||+.||+.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34689999999999999999973 99999999999999999998755
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.86 E-value=2.2e-09 Score=88.86 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
.+++||+||+++|+++++.||.+ |..||.+|++||+.||+.|+++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 46899999999999999999985 999999999999999999998874
No 30
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.85 E-value=3.4e-09 Score=84.23 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHh-hcCCCCHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEE-HVGTKTAVQIRSHA 101 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe-~VgTRT~~QVRSHA 101 (459)
+....||++|+.+|++||.+||++|..|+. +|++||..||..|+
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 456799999999999999999999999999 69999999999887
No 31
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.84 E-value=3.6e-09 Score=85.21 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=43.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHH
Q 012625 55 TITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQ 102 (459)
Q Consensus 55 titk~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQ 102 (459)
....++++||+||++++++++++||..|..||.++ +||..||+.++.
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 34457889999999999999999999999999999 999999999986
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.83 E-value=3.5e-09 Score=88.50 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
++.||.||+++|+++++.||. .|..||.+|++||+.||+.|+.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 468999999999999999997 5999999999999999999998874
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.77 E-value=5.7e-09 Score=90.06 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
+++||.||+++|+++++.||. +|..||.+|++||+.||+.|++.|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 579999999999999999995 5999999999999999999999885
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.76 E-value=3.9e-09 Score=90.42 Aligned_cols=47 Identities=26% Similarity=0.525 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
.++.||+||+.+|++++..||..|..||++|++||..||+.|+..+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999997553
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.75 E-value=8.1e-09 Score=88.46 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
..++.||.||+++|+++++.||.+ |..||.++++||..||+.|+.+|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 356899999999999999999975 999999999999999999998875
No 36
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.65 E-value=4.1e-08 Score=80.74 Aligned_cols=47 Identities=17% Similarity=0.432 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhCcc-hHHHHhh----cCCCCHHHHHHHHHHHHHHH
Q 012625 62 RWTEEEHKKFLEALKLFGRA-WRKIEEH----VGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 62 ~WT~EEH~lFLeaLe~yGrg-WkkIAe~----VgTRT~~QVRSHAQKYF~Kl 108 (459)
+||.||++.|++|+++||.+ |+.|++. +++||..||+.++..++.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 79999999999999999996 9999984 88999999999999887654
No 37
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.63 E-value=3.2e-08 Score=82.65 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHA 101 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHA 101 (459)
+....||+|||++|.+|+.+||++|..||++|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 34679999999999999999999999999999999999999876
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.60 E-value=5.4e-08 Score=83.39 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=45.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhc----CCCCHHHHHHHHHHHHHH
Q 012625 56 ITKQRERWTEEEHKKFLEALKLFGRA-WRKIEEHV----GTKTAVQIRSHAQKFFSK 107 (459)
Q Consensus 56 itk~r~~WT~EEH~lFLeaLe~yGrg-WkkIAe~V----gTRT~~QVRSHAQKYF~K 107 (459)
..+.+.+||.||++.|++|+++||.+ |+.|+... ..||.+||+.++..++.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34567899999999999999999996 99999854 799999999999988654
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.59 E-value=8.4e-08 Score=84.09 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=48.6
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhc----CCCCHHHHHHHHHHHHHHH
Q 012625 54 YTITKQRERWTEEEHKKFLEALKLFGRA-WRKIEEHV----GTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 54 ytitk~r~~WT~EEH~lFLeaLe~yGrg-WkkIAe~V----gTRT~~QVRSHAQKYF~Kl 108 (459)
....+.+++||.||.+.+++|+++||.+ |..|+.+. ..||..||+.++..++.+.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 4456778999999999999999999996 99999874 7999999999999887654
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.59 E-value=2.1e-08 Score=88.63 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
.+++||+||+.+|++++..||..|..||.+|++||..||+.|+..+.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999997553
No 41
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.59 E-value=5.3e-09 Score=85.22 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc----hHHHHhhcCCCCHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGRA----WRKIEEHVGTKTAVQIRSHAQ 102 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGrg----WkkIAe~VgTRT~~QVRSHAQ 102 (459)
...||.+|+++|..||.+|+++ |.+||+.||+||+.||+.|||
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3579999999999999999984 999999999999999999997
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.58 E-value=1.3e-07 Score=82.97 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=46.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhc----CCCCHHHHHHHHHHHHHHH
Q 012625 56 ITKQRERWTEEEHKKFLEALKLFGRA-WRKIEEHV----GTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 56 itk~r~~WT~EEH~lFLeaLe~yGrg-WkkIAe~V----gTRT~~QVRSHAQKYF~Kl 108 (459)
..+.+.+||.||++.+++|+++||.+ |..|+.+. ..||..||+.++..++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 44678899999999999999999996 99999854 8999999999999887654
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.53 E-value=7.4e-08 Score=85.10 Aligned_cols=48 Identities=21% Similarity=0.505 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVRSHAQKYF 105 (459)
..+++||.||+.+|++++..||.. |..||.++++||..||+.|+..|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 357899999999999999999975 999999999999999999998875
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.39 E-value=4.6e-07 Score=71.66 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=41.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHH---hhcCCCCHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIE---EHVGTKTAVQIRSHAQK 103 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIA---e~VgTRT~~QVRSHAQK 103 (459)
.++.+||+||.+.+++|+++||..|+.|+ .|+..||.+.++..+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 56789999999999999999999999999 58889999999987754
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.11 E-value=1.4e-06 Score=84.38 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc------hHHHHhhcCCCCHHHHHHHHHHHHHH
Q 012625 59 QRERWTEEEHKKFLEALKLFGRA------WRKIEEHVGTKTAVQIRSHAQKFFSK 107 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGrg------WkkIAe~VgTRT~~QVRSHAQKYF~K 107 (459)
.+..||+||++.+++++++||.. |..||.++++||..|||.|+..|+.+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 46799999999999999999875 99999999999999999999998754
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.29 E-value=0.00029 Score=69.93 Aligned_cols=48 Identities=23% Similarity=0.485 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 61 ERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 61 ~~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
+.||..+-..|+.|+++||++ |..||..|++||+.+|+.|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 579999999999999999997 999999999999999999999888877
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.14 E-value=0.00051 Score=53.00 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------Ccc-hHHHHh-hcCCCCHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLF--------GRA-WRKIEE-HVGTKTAVQIRSHAQKFF 105 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~y--------Grg-WkkIAe-~VgTRT~~QVRSHAQKYF 105 (459)
+..+|+||+..+++-|..| |.. |+.||+ .++.+|-.++|.|+-|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 555 999999 899999999999998875
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.82 E-value=0.00019 Score=75.14 Aligned_cols=42 Identities=19% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHA 101 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHA 101 (459)
...||++|+.+|.+||.+||++|..|+.+|++||..+|-.||
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 358999999999999999999999999999999999998776
No 49
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.60 E-value=0.005 Score=51.91 Aligned_cols=52 Identities=12% Similarity=0.315 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHh
Q 012625 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHV-----GTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGrgWkkIAe~V-----gTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
...||.||...+++..++||..|-.|+... +.||..+|+.++=..-.++.+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999866 5799999999987776677654
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.52 E-value=0.021 Score=48.52 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---chHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGR---AWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGr---gWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r 110 (459)
-..||.||++-.|.+.++-|. .|..||..+|.|++.||+.++|....=+++
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999997 499999999999999999999976544443
No 51
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.86 E-value=0.014 Score=57.99 Aligned_cols=54 Identities=17% Similarity=0.362 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---c-hHHHH------------hhcCCCCHHHHHHHHHHHHHHHHHhh
Q 012625 59 QRERWTEEEHKKFLEALKLFGR---A-WRKIE------------EHVGTKTAVQIRSHAQKFFSKVVRES 112 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yGr---g-WkkIA------------e~VgTRT~~QVRSHAQKYF~Kl~r~~ 112 (459)
+...||++||..||-+|.+||. + |..|- -||-+||+.+|..|++-...-+.|..
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE~ 280 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 280 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999 7 99996 38889999999999997777666663
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.81 E-value=0.013 Score=53.16 Aligned_cols=54 Identities=15% Similarity=0.336 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--cc-hHHHHhh--cCCCCHHHHHHHHHHHHHHHHHhh
Q 012625 59 QRERWTEEEHKKFLEALKLFG--RA-WRKIEEH--VGTKTAVQIRSHAQKFFSKVVRES 112 (459)
Q Consensus 59 ~r~~WT~EEH~lFLeaLe~yG--rg-WkkIAe~--VgTRT~~QVRSHAQKYF~Kl~r~~ 112 (459)
....||+.|-..|+.|+.+|| .+ |..|++. +..||...|+.+++.|.....+.-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~ 64 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKAL 64 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 55 9999864 568999999999998887766543
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.36 E-value=0.018 Score=58.83 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHhhcC-CCCHHHHHHHHHHHHHHH
Q 012625 61 ERWTEEEHKKFLEALKLFGRA-WRKIEEHVG-TKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 61 ~~WT~EEH~lFLeaLe~yGrg-WkkIAe~Vg-TRT~~QVRSHAQKYF~Kl 108 (459)
+.||..+=..|+.|+++||++ -..||..|+ +||+.+|+.+++-|+.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 589999999999999999998 999999998 999999999999888765
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.00 E-value=0.083 Score=42.30 Aligned_cols=53 Identities=11% Similarity=0.355 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-------c---chHHHHhhcC----CCCHHHHHHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFG-------R---AWRKIEEHVG----TKTAVQIRSHAQKFFSKVVR 110 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yG-------r---gWkkIAe~Vg----TRT~~QVRSHAQKYF~Kl~r 110 (459)
+....||.+|-.+||++...+. . -|..||+.+. .||+.||+.-.......-++
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457899999999999997642 1 2999997543 79999999988765555433
No 55
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.90 E-value=0.011 Score=47.91 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCc---chHHHHhhcCCCCHHHHHHHHHHHHH
Q 012625 61 ERWTEEEHKKFLEALKLFGR---AWRKIEEHVGTKTAVQIRSHAQKFFS 106 (459)
Q Consensus 61 ~~WT~EEH~lFLeaLe~yGr---gWkkIAe~VgTRT~~QVRSHAQKYF~ 106 (459)
..||.||+.-.|.+.++-|. .|..||.-+ .||+.||..++|....
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 47999999999999999997 599999988 8999999999987543
No 56
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.36 E-value=0.24 Score=44.85 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHh--h------------cCCCCHHHHHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGRA-WRKIEE--H------------VGTKTAVQIRSHAQKFFSKVV 109 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGrg-WkkIAe--~------------VgTRT~~QVRSHAQKYF~Kl~ 109 (459)
...||.+|+..||.|+.+||.+ |..|-. - .-+.++..+..++. |+.++-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 4579999999999999999998 999953 1 12456778999986 555543
No 57
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.09 E-value=0.42 Score=40.43 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHh-hc----CCCCHHHHHHHHHHHHHHHHHh
Q 012625 60 RERWTEEEHKKFLEALKLFGRAWRKIEE-HV----GTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGrgWkkIAe-~V----gTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
...||.||-..+.+..+.|+..|--|+. |- +.||..+++.++=..-.+|.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999996 43 3799999999998887777665
No 58
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=89.42 E-value=0.18 Score=42.11 Aligned_cols=47 Identities=28% Similarity=0.553 Sum_probs=33.3
Q ss_pred chHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHhhCCCCCCCCCcccCCCCCCCC
Q 012625 81 AWRKIEEHVG-----TKTAVQIRSHAQKFFSKVVRESNGCSTSPVEPVEIPPPRPKR 132 (459)
Q Consensus 81 gWkkIAe~Vg-----TRT~~QVRSHAQKYF~Kl~r~~~G~~~~~~~~i~iPpprpKR 132 (459)
.|+.|++.+| +-...+++.|+++|+...++...|. .+..||+..|++
T Consensus 56 ~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~-----~~~~~p~~~~~~ 107 (107)
T 1ig6_A 56 QWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGE-----EDKPLPPIKPRK 107 (107)
T ss_dssp THHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHH-----TSSSSCTTCSCC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCCCCCCCC
Confidence 4999998777 2235799999999987655544332 245788877765
No 59
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=87.42 E-value=0.94 Score=44.09 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=24.9
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 82 WRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 82 WkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
|+.||++.+.+|...+|.++.||..+.
T Consensus 174 fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 174 FKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 999999999999999999999887654
No 60
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.10 E-value=0.77 Score=38.09 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=36.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc---c-h------------HHHHhhcC-----CCCHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGR---A-W------------RKIEEHVG-----TKTAVQIRSHAQKF 104 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGr---g-W------------kkIAe~Vg-----TRT~~QVRSHAQKY 104 (459)
+..+.|.++=+..|++||+.|-. . + .-|++||- .||..||-||-|-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 45678999999999999999953 1 1 22455443 79999999999943
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.24 E-value=0.72 Score=45.08 Aligned_cols=27 Identities=33% Similarity=0.785 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHh
Q 012625 61 ERWTEEEHKKFLEALKLFGRA-WRKIEE 87 (459)
Q Consensus 61 ~~WT~EEH~lFLeaLe~yGrg-WkkIAe 87 (459)
-.|+.+|+..||.|+-+||.| |..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 579999999999999999999 999963
No 62
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.31 E-value=6.2 Score=38.50 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---chHHHHh--hcCCCCHHHHHHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGR---AWRKIEE--HVGTKTAVQIRSHAQKFFSKVVR 110 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGr---gWkkIAe--~VgTRT~~QVRSHAQKYF~Kl~r 110 (459)
++.||+.|-.+|+.+|.+||. .|..|++ -+..|+...|+.-++......++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~ 58 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKD 58 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999994 4999974 56789999888877765554433
No 63
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=71.88 E-value=6.6 Score=40.16 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---c-hHHHHh------------hcCCCCHHHHHHHHHHHHHHHHHhhC
Q 012625 60 RERWTEEEHKKFLEALKLFGR---A-WRKIEE------------HVGTKTAVQIRSHAQKFFSKVVRESN 113 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGr---g-WkkIAe------------~VgTRT~~QVRSHAQKYF~Kl~r~~~ 113 (459)
...||++|+..+|-.|-+||. + |..|-. |+-+||+..|.-|+.-...-|.|...
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 447999999999999999998 6 999921 47899999999999876666666644
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=71.72 E-value=6.9 Score=33.48 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=26.5
Q ss_pred chHHHHhhcCCCC----HHHHHHHHHHHHHHHHHh-hCC
Q 012625 81 AWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRE-SNG 114 (459)
Q Consensus 81 gWkkIAe~VgTRT----~~QVRSHAQKYF~Kl~r~-~~G 114 (459)
.|+.|++.+|--+ ..++|.||+||+...++. ..|
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g 112 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERG 112 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4999998777433 579999999999887775 245
No 65
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=65.37 E-value=18 Score=29.72 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhC-------cchHHHHhhcCCCC----HHHHHHHHHHHHHHHHHhhCC
Q 012625 68 HKKFLEALKLFG-------RAWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRESNG 114 (459)
Q Consensus 68 H~lFLeaLe~yG-------rgWkkIAe~VgTRT----~~QVRSHAQKYF~Kl~r~~~G 114 (459)
+.+|..-.+.-| +.|+.|++.+|--. ..+++.|++||+...++...|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 455555444434 34999998777433 579999999999888776554
No 66
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.06 E-value=7.1 Score=33.00 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=25.8
Q ss_pred chHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 012625 81 AWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 81 gWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
.|+.||+.+|-....+++.||.||+...++-
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 102 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPYERH 102 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHHHHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 4999999888666899999999998766553
No 67
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=62.28 E-value=8.9 Score=31.05 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=25.1
Q ss_pred chHHHHhhcCCC----CHHHHHHHHHHHHHHHHHhhC
Q 012625 81 AWRKIEEHVGTK----TAVQIRSHAQKFFSKVVRESN 113 (459)
Q Consensus 81 gWkkIAe~VgTR----T~~QVRSHAQKYF~Kl~r~~~ 113 (459)
.|+.|++.+|-- ...++|.|++||+...++...
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~~ 95 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQS 95 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHHC
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 499999877632 267999999999887765443
No 68
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.92 E-value=28 Score=29.66 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=27.3
Q ss_pred chHHHHhhcCCCC----HHHHHHHHHHHHHHHHHhhCCC
Q 012625 81 AWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRESNGC 115 (459)
Q Consensus 81 gWkkIAe~VgTRT----~~QVRSHAQKYF~Kl~r~~~G~ 115 (459)
.|+.|++.+|-.. ..++|.|++||+..-++...|.
T Consensus 65 ~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~~ 103 (122)
T 2eqy_A 65 KWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGD 103 (122)
T ss_dssp THHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhcC
Confidence 4999998776422 4799999999999887776554
No 69
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=50.93 E-value=17 Score=31.37 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=27.6
Q ss_pred chHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 012625 81 AWRKIEEHVGTKTAVQIRSHAQKFFSKVVRES 112 (459)
Q Consensus 81 gWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~~ 112 (459)
.|+.|++-+|--...++|.||.||+..-++--
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~~ 102 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLPYERHM 102 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 49999998886669999999999999887754
No 70
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.27 E-value=24 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=26.2
Q ss_pred chHHHHhhcCCCC----HHHHHHHHHHHHHHHHHhhCC
Q 012625 81 AWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRESNG 114 (459)
Q Consensus 81 gWkkIAe~VgTRT----~~QVRSHAQKYF~Kl~r~~~G 114 (459)
.|+.|++.+|-.. ..++|.|++||+...++...|
T Consensus 63 ~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~~~ 100 (117)
T 2jrz_A 63 RWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSG 100 (117)
T ss_dssp THHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4999998776432 679999999998877665444
No 71
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=46.77 E-value=29 Score=29.65 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=26.7
Q ss_pred chHHHHhhcCC-----CCHHHHHHHHHHHHHHHHHhhCC
Q 012625 81 AWRKIEEHVGT-----KTAVQIRSHAQKFFSKVVRESNG 114 (459)
Q Consensus 81 gWkkIAe~VgT-----RT~~QVRSHAQKYF~Kl~r~~~G 114 (459)
.|+.|++.+|- -...++|.||.||+...++...|
T Consensus 75 ~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 75 LWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKN 113 (128)
T ss_dssp THHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 49999987772 23689999999999887776544
No 72
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=44.88 E-value=31 Score=30.27 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=27.5
Q ss_pred chHHHHhhcCC-----CCHHHHHHHHHHHHHHHHHhhCCC
Q 012625 81 AWRKIEEHVGT-----KTAVQIRSHAQKFFSKVVRESNGC 115 (459)
Q Consensus 81 gWkkIAe~VgT-----RT~~QVRSHAQKYF~Kl~r~~~G~ 115 (459)
.|+.|++-+|- -...+++.||+||+...+....|.
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~ 126 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGL 126 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCC
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 49999987763 236799999999988887776664
No 73
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=43.06 E-value=57 Score=23.25 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 012625 61 ERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 61 ~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
..+++.|...|..-+ ..|..++.||+.+|- +...|+.|-.+-..++.+.
T Consensus 14 ~~L~~~~r~il~l~~-~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 14 ADLTTDQREALLLTQ-LLGLSYADAAAVCGC-PVGTIRSRVARARDALLAD 62 (70)
T ss_dssp TSSCHHHHHHHHHHH-TSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC-
T ss_pred HhCCHHHHHHHHHHH-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHHH
Confidence 357777777665432 557789999998875 7778888887777777654
No 74
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.82 E-value=25 Score=30.33 Aligned_cols=30 Identities=7% Similarity=0.267 Sum_probs=23.3
Q ss_pred chHHHHhhcCC-----CCHHHHHHHHHHHHHHHHH
Q 012625 81 AWRKIEEHVGT-----KTAVQIRSHAQKFFSKVVR 110 (459)
Q Consensus 81 gWkkIAe~VgT-----RT~~QVRSHAQKYF~Kl~r 110 (459)
.|+.||.-+|- -...++|.||.||+..-+.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 49999987762 2367999999999887654
No 75
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.19 E-value=93 Score=22.35 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~ 109 (459)
...+|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|-..-+.++.
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHC
Confidence 35688999888876 4 567789999998875 77888888888777774
No 76
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.47 E-value=36 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCcchHHHHhhcC-CCCHHHHHHHHHHHHHHHHHh
Q 012625 65 EEEHKKFLEALKLFGRAWRKIEEHVG-TKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 65 ~EEH~lFLeaLe~yGrgWkkIAe~Vg-TRT~~QVRSHAQKYF~Kl~r~ 111 (459)
+-|...+.++|+.+|..+.+.|+.+| +|+ .++.|+++.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGisr~---------tL~rklkk~ 56 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGIDLS---------NLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTCCHH---------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCcCHH---------HHHHHHHHh
Confidence 45888999999999988999999888 444 355666654
No 77
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.33 E-value=1.3e+02 Score=23.70 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 012625 61 ERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 61 ~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
...|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|-..-+.|+...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4688999988887 4 788889999998875 8888999999888888543
No 78
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.33 E-value=94 Score=22.78 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 012625 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (459)
Q Consensus 62 ~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~ 109 (459)
.+|+.|.+.|.. + ..|...+.||+.+|- +...|+.|-..-+.|+.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 467788777766 4 567779999998864 77888888888777764
No 79
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.76 E-value=50 Score=26.17 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCcchHHHHhhcC-CCC
Q 012625 64 TEEEHKKFLEALKLFGRAWRKIEEHVG-TKT 93 (459)
Q Consensus 64 T~EEH~lFLeaLe~yGrgWkkIAe~Vg-TRT 93 (459)
..-|...+.++|+.+|....+.|+.+| +|+
T Consensus 49 ~~~E~~~i~~aL~~~~gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 49 PELERTLLTTALRHTQGHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHCcCHH
Confidence 345888899999999988999999888 444
No 80
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.71 E-value=1.3e+02 Score=24.16 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.1
Q ss_pred HhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 012625 77 LFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (459)
Q Consensus 77 ~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~r~ 111 (459)
..|...+.||+.+| -+...|+.+-..-..+|++.
T Consensus 122 ~~g~s~~EIA~~lg-is~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 122 IRGYSYREIATILS-KNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp TTTCCHHHHHHHHT-CCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
Confidence 34667999999887 36777777776666666554
No 81
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.25 E-value=1.4e+02 Score=22.87 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=39.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 012625 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (459)
Q Consensus 58 k~r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl~ 109 (459)
..-...|+.|.+.|.. + ..|..-+.||+.+| -+..-|+.|-..-+.|+.
T Consensus 17 ~~~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~-is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 17 RDVNQLTPRERDILKL-I-AQGLPNKMIARRLD-ITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CCGGGSCHHHHHHHHH-H-TTTCCHHHHHHHHT-SCHHHHHHHHHHHHHHTT
T ss_pred HHHccCCHHHHHHHHH-H-HcCCCHHHHHHHHC-cCHHHHHHHHHHHHHHHc
Confidence 4456799999988877 4 67888999999886 477889998888887774
No 82
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=23.24 E-value=1.6e+02 Score=23.21 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 60 r~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
...-|+.|.+.|...+ .|..-+.||+.++- +..-|+.|-...+.|+
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 4567888888776644 78889999998764 7788999999988887
No 83
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.92 E-value=66 Score=25.84 Aligned_cols=31 Identities=3% Similarity=0.069 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCcchHHHHhhcC-CCC
Q 012625 63 WTEEEHKKFLEALKLFGRAWRKIEEHVG-TKT 93 (459)
Q Consensus 63 WT~EEH~lFLeaLe~yGrgWkkIAe~Vg-TRT 93 (459)
..+-|.+.+.++|+.+|....+.|+.+| +|+
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGISR~ 69 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNMHRR 69 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHH
Confidence 3456788899999999988999999888 454
No 84
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=20.39 E-value=21 Score=30.66 Aligned_cols=12 Identities=33% Similarity=1.104 Sum_probs=10.1
Q ss_pred cCcccccchhhh
Q 012625 431 KGFVPYKKRIVE 442 (459)
Q Consensus 431 kGFVPYKr~laE 442 (459)
-||-||.||+-|
T Consensus 48 ~GfaPYErr~mE 59 (100)
T 3izc_k 48 AGLSPYERRLID 59 (100)
T ss_dssp HHHTTSCCHHHH
T ss_pred hcCchhHHHHHH
Confidence 499999998876
No 85
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=20.31 E-value=20 Score=30.90 Aligned_cols=12 Identities=67% Similarity=1.359 Sum_probs=10.0
Q ss_pred cCcccccchhhh
Q 012625 431 KGFVPYKKRIVE 442 (459)
Q Consensus 431 kGFVPYKr~laE 442 (459)
-||-||.||+-|
T Consensus 49 ~GfaPYErR~mE 60 (104)
T 4a18_Q 49 TGFAPYEKRIIE 60 (104)
T ss_dssp HCCCHHHHHHHH
T ss_pred hcCchhHHHHHH
Confidence 499999888876
No 86
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.04 E-value=2.2e+02 Score=23.01 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 012625 61 ERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (459)
Q Consensus 61 ~~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVRSHAQKYF~Kl 108 (459)
..=|+.|.+.|... ..|...+.||+.++- +..-|+.|-..-+.|+
T Consensus 33 ~~Lt~re~~Vl~l~--~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 33 KRLSPKESEVLRLF--AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSCCHHHHHHHHHH--HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 45688888887653 468889999998865 7888999998888877
Done!