Query 012626
Match_columns 459
No_of_seqs 482 out of 1294
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 13:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6.9E-47 2.3E-51 365.1 33.3 402 26-440 51-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 9.2E-39 3.2E-43 304.9 19.2 374 14-420 47-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 5.2E-36 1.8E-40 284.8 27.8 353 12-416 43-428 (438)
4 2gfp_A EMRD, multidrug resista 100.0 3.8E-35 1.3E-39 272.9 8.7 342 18-411 23-367 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 5.9E-33 2E-37 267.6 24.0 391 22-423 46-475 (491)
6 2xut_A Proton/peptide symporte 100.0 6.9E-29 2.4E-33 241.2 18.8 148 21-170 39-197 (524)
7 2cfq_A Lactose permease; trans 100.0 2.2E-30 7.5E-35 243.8 3.9 360 19-423 32-403 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.1E-13 3.9E-18 131.2 10.9 181 233-424 29-211 (451)
9 3o7q_A L-fucose-proton symport 99.5 2.2E-13 7.5E-18 128.8 12.7 153 235-398 29-182 (438)
10 2gfp_A EMRD, multidrug resista 99.4 1E-12 3.5E-17 121.5 12.6 169 242-424 10-179 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.4 6.6E-13 2.2E-17 127.5 10.1 165 240-418 21-194 (491)
12 2xut_A Proton/peptide symporte 99.4 3.5E-12 1.2E-16 123.5 13.9 159 247-418 27-196 (524)
13 2cfq_A Lactose permease; trans 99.4 4.8E-13 1.7E-17 125.4 6.0 147 27-175 256-404 (417)
14 4gc0_A D-xylose-proton symport 99.1 7.4E-10 2.5E-14 106.2 14.1 151 24-175 306-467 (491)
15 2g9p_A Antimicrobial peptide l 59.9 2.9 0.0001 19.5 0.6 14 49-62 2-15 (26)
16 4dve_A Biotin transporter BIOY 26.2 1.4E+02 0.0047 23.8 5.7 23 37-59 100-122 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=6.9e-47 Score=365.11 Aligned_cols=402 Identities=26% Similarity=0.465 Sum_probs=318.7
Q ss_pred ccCchhHHHHHHhHHHHHHHhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHH------------------HHHhHHHHH
Q 012626 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA------------------AAANLAMLL 87 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~ 87 (459)
+.++.+.|++.+++.+|..++++++|+++||+|||++++++.+++.+++++++ +++|+++++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 44567789999999999999999999999999999999999999999999998 478999999
Q ss_pred HHHHHHhhcccccchhhhHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc------ccchhHHHHHhhhHHH
Q 012626 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL------ETWGWRLSLGLAAAPA 161 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~~~~~------~~~gwr~~f~~~~~~~ 161 (459)
++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++...... ...+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998885443322 2357999999999999
Q ss_pred HHHHHHHhccCCChHHHHhhCcHHHHHHHHHHHhCCCcccHHHHHHHHHHHhhcccCCchHHHhcccchhHHHHHHHHHH
Q 012626 162 LMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 162 ~~~~~~~~~~~e~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
++..+..+++||||+|+..+++.+++++.+++...++..+++..+..+.....++. ...... ...++.........
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKT-GGRLLM---FGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHH---SCCTHHHHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhh-hhHHHH---hcccHHHHHHHHHH
Confidence 88888888999999999999999999998888766544333333222222211111 111111 22334455566666
Q ss_pred HhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhhhHHHHHHHHHHHHHHhhc
Q 012626 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
+....+...+..|.+.+.+..+.+...........++..+++.++++++.||+|||+.+..+.....++.+.+......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~- 365 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT- 365 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-
Confidence 7777788888899999988888888888888888899999999999999999999999998888888777766554321
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 012626 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF---- 397 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---- 397 (459)
....+..+....++..+++.++.++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+..
T Consensus 366 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~ 437 (491)
T 4gc0_A 366 --------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA 437 (491)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred --------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12234445555666667777788888899999999999999999999999999999999887765432
Q ss_pred --c-chhHHHHHHHHHHHHHhheeeccCCCCCCHHHHHHHHhcccc
Q 012626 398 --K-FGIFLFFAGWVTIMTIFVYFFLPETKGVPIEEMILLWRKHWF 440 (459)
Q Consensus 398 --~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (459)
+ ...++++++++.+..++.++++||+|+|++||+++.++++.+
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 2 234556666777777778889999999999999887765543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=9.2e-39 Score=304.93 Aligned_cols=374 Identities=13% Similarity=0.078 Sum_probs=274.9
Q ss_pred hhhcCCCCCCccccCchhHHHHHHhHHHHHHHhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH----HHhHHHHHHH
Q 012626 14 LKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA----AANLAMLLTG 89 (459)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 89 (459)
.....+.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++.+.++.+++.+++++ ++|++.++++
T Consensus 47 ~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (451)
T 1pw4_A 47 FALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 125 (451)
T ss_dssp HHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHH
T ss_pred HHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 334455567778 99999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHhhcccccchhhhHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhccccch-hHHHHHhhhHHHHHHHHH-
Q 012626 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG-WRLSLGLAAAPALMMTVG- 167 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~g-wr~~f~~~~~~~~~~~~~- 167 (459)
|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.++ ....+..| ||+.|++.++++++..+.
T Consensus 126 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 126 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF--LLGMAWFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH--HHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999994 44345567 999999999888776554
Q ss_pred HhccCCChHHHHhhCcHHHHHHHHHHHhCCCcccHHHHHHHHHHHhhcccCCc--hHHHhcccchhHHHHHHHHHHHhhh
Q 012626 168 GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHP--FRNILERRNRPQLVMAIFMPMFQIL 245 (459)
Q Consensus 168 ~~~~~e~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
.+++||+|+....+++.+. .+ +.+. +..+ .++++....+ .++.++++ .++...+..+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~-----------~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 265 (451)
T 1pw4_A 204 FAMMRDTPQSCGLPPIEEY-----------KN-DYPD-DYNE-KAEQELTAKQIFMQYVLPNK----LLWYIAIANVFVY 265 (451)
T ss_dssp HHHCCCSSTTTCCCSCTTT-----------CC-C---------------CCTHHHHHHTSSCH----HHHHHHHHHHHHH
T ss_pred HhhccCCHhhcCCCChhhh-----------cc-cccc-cchh-hhhcccccccchHHHHHcCH----HHHHHHHHHHHHH
Confidence 4568888754321111100 00 0000 0000 0000000111 23333332 2444444445555
Q ss_pred cchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--CCchhhhhhhHHHH-HHHHHHHHHHhhc
Q 012626 246 TGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKL--GRRALLISGGIQMI-TCQVIVSIILGLK 321 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 321 (459)
........+.|.++++ +|+++.+.+.......++.+++.++.+++.||+ +||+.+..+..... ++.+++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----
Confidence 5666777888888887 899999999999999999999999999999999 99988776655544 333222111
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHhhccch
Q 012626 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF-FTFVIAQIFLTLLCSFKFG 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 400 (459)
+..+.+.......+.+.+.+.. .+....+..|.+|++.|+++.|+.+.+.++ |..++|.+.|.+.+..++.
T Consensus 342 -------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~ 413 (451)
T 1pw4_A 342 -------PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 413 (451)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred -------cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 1112333344444444444433 333357888999999999999999999999 9999999999999998887
Q ss_pred hHHHHHHHHHHHHHhheeec
Q 012626 401 IFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~~~ 420 (459)
..+...+++.+++.++.+..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 414 GGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777666666655554443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.2e-36 Score=284.80 Aligned_cols=353 Identities=12% Similarity=0.107 Sum_probs=265.9
Q ss_pred hhhhhcCCCCCCccccCchhHHHHHHhHHHHHHHhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH---HHHHhHHHHHH
Q 012626 12 VYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALN---AAAANLAMLLT 88 (459)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 88 (459)
.......+.+++++|+++.+.|++.+.+.++..++++++|+++||+|||++++.+.++.+++.+++ +++++++.+++
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 334444555788899999999999999999999999999999999999999999999999999999 88899999999
Q ss_pred HHHHHhhcccccchhhhHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhccccch-------------------
Q 012626 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG------------------- 149 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~g------------------- 149 (459)
+|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.++..... +..+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL-SNVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH-TSSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccccCCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999543331 2222
Q ss_pred ------hHHHHHhhhHHHHHHHHHHhc--cCCChHHHHhhCcHHHHHHHHHHHhCCCcccHHHHHHHHHHHhhcccCCch
Q 012626 150 ------WRLSLGLAAAPALMMTVGGIL--LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPF 221 (459)
Q Consensus 150 ------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (459)
||+.|++.+++.++..+..++ .||+++.. +++ +++++.+.++
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~---------------------------~~~~~~~~~~ 251 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD---------------------------AKQGSFSASL 251 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC---------------------------SSTTSHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc---------------------------ccccchhhhH
Confidence 999998877776665554433 46654210 000 0001112234
Q ss_pred HHHhcccchhHHHHHHHHHHHhhhcchHHHHHhHHHH-HHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchh
Q 012626 222 RNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL-FQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRAL 299 (459)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 299 (459)
++.++++..+ ...+..+...........+.|.+ .++ +|++..+.+.......++.+++.++.+++.||++||+.
T Consensus 252 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 327 (438)
T 3o7q_A 252 SRLARIRHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_dssp HHHTTCSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHhChHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5555555433 33333333444456666777877 777 59999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHH
Q 012626 300 LISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVN 379 (459)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 379 (459)
+..+.....++.+++... +.. .......+.+.+.+... +..+.+..|.+|++ ++.+.++.. .+
T Consensus 328 ~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~ 390 (438)
T 3o7q_A 328 LAAYALIAMALCLISAFA-------------GGH-VGLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MT 390 (438)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------CHH-HHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHHc-------------CCc-HHHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HH
Confidence 888877776665544432 111 22333344445544343 45567778989866 888888877 77
Q ss_pred HHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhh
Q 012626 380 LFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFV 416 (459)
Q Consensus 380 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 416 (459)
.+++.++|.+.|.+.|..+ +...+.+.+++.+...+.
T Consensus 391 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp THHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988 777777666555554444
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3.8e-35 Score=272.91 Aligned_cols=342 Identities=14% Similarity=0.141 Sum_probs=257.3
Q ss_pred CCCCCCccccCchhHHHHHHhHHHHHHHhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 012626 18 HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGI 97 (459)
Q Consensus 18 ~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 97 (459)
.+...+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHhhhHHHHHHHH-HHhccCCChH
Q 012626 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV-GGILLPETPN 176 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~p~ 176 (459)
+...+...+++.|++|+++|++++++.+.+..+|..++|.+ .....+..+||+.|++.++..++..+ ..+++||+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI--GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 99999999999999999999999999999999999999999 55666667999999998888877766 3455788763
Q ss_pred HHHhhCcHHHHHHHHHHHhCCCcccHHHHHHHHHHHhhcccCCchHHHhcccchhHHHHHHHHHHHhhhcchHHHHHhHH
Q 012626 177 SLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAP 256 (459)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
.. + ++++.+.++++.++++.. +...+..+...........+.|
T Consensus 181 ~~---~------------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
T 2gfp_A 181 VD---A------------------------------PRTRLLTSYKTLFGNSGF----NCYLLMLIGGLAGIAAFEACSG 223 (375)
T ss_dssp TT---C------------------------------CCCCTTTCSTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCS
T ss_pred CC---c------------------------------ccccHHHHHHHHhcCcch----HHHHHHHHHHHHHHHHHHHHHH
Confidence 20 0 001123345555555442 2333333334444555666677
Q ss_pred HHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhhhHH-HHHHHHHHHHHHhhccCCCccccchhhh
Q 012626 257 VLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQ-MITCQVIVSIILGLKFGPNQELSKSFSI 334 (459)
Q Consensus 257 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.+.++ +|.++.+.+.......++.+++.++.+++.||.+++ ...+... ...+...+..... ...+.+
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 292 (375)
T 2gfp_A 224 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVW 292 (375)
T ss_dssp CSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHH
Confidence 77665 888888999999999999999999999999998762 2222222 1212111111100 012233
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 012626 335 LVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTI 411 (459)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (459)
.......+.+.+.+.. .+....+..|..| ++|+++.|+.+....+|..++|.+.+.+.+..++...+...++..+
T Consensus 293 ~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 367 (375)
T 2gfp_A 293 TLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLL 367 (375)
T ss_dssp HHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3344445555555544 4444688889998 8999999999999999999999999999887777666665544433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=5.9e-33 Score=267.63 Aligned_cols=391 Identities=15% Similarity=0.109 Sum_probs=249.7
Q ss_pred CCccccCchhHHHHHHhHHHHHHHhhhhhhhhhhh-ccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccc
Q 012626 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34589999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhccCCCc--chHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHhhhHHHHHHHHHHhcc-CCCh--
Q 012626 101 NQAVPLYLSEMAPTHL--RGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL-PETP-- 175 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~e~p-- 175 (459)
.+...+++.|++|+++ |+.++++++.+.++|..++|.+ .....+..|||+.|++.++..++..+..++. |+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI--VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 7778888999999999999999 5555566789999999877776665544332 2111
Q ss_pred --HHHHhhCcHHHHHHHHHH----------------HhCCCcccHHHHHHHH---------HHHhhcccCCchHHHhccc
Q 012626 176 --NSLIERGKKVEGRRVLEK----------------IRGTKEVNAEYQDMVD---------ASELANSIKHPFRNILERR 228 (459)
Q Consensus 176 --~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 228 (459)
+....+.+.++.++..++ ..+..+.+........ .....++.+.. ...+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 281 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLR 281 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HHHHHH
Confidence 000111122232222221 1111111111000000 00000000000 001111
Q ss_pred chhHHHHHHHHHHHhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhh-----h
Q 012626 229 NRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLI-----S 302 (459)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~ 302 (459)
.. . .....+........+.....+.+.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .
T Consensus 282 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 282 VV-S-YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp CT-T-HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HH-H-HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 11 1 1112222222222333344455666665 6777677788888889999999999999999999987655 4
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHHHHH
Q 012626 303 GGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFF 382 (459)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 382 (459)
+....+++.+++....... .+ ..+...+.......+.+.+.+. ..+..+.++.|.+|++.|+++.|+.+....+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555544443322110 00 0111233344444444444443 34445788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhheeeccCC
Q 012626 383 TFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPET 423 (459)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 423 (459)
..+++.+.+.+.+......+...+.++.+.+++.++..++.
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765433444444444444444444444443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=6.9e-29 Score=241.18 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=132.1
Q ss_pred CCCccc------cCchhHHHHHHhHHHHHHHhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Q 012626 21 ENNYCK------YDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAA-NLAMLLTGRIL 92 (459)
Q Consensus 21 ~~~~~~------~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 92 (459)
+++++| ++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++
T Consensus 39 l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (524)
T 2xut_A 39 LMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFL 118 (524)
T ss_dssp HHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345566 9999999999999999999999999999999 999999999999999999999999 99999999999
Q ss_pred HhhcccccchhhhHHHHhccCCCcchHHHHH---HHHHHHHHHHHHHHHhhhhhccccchhHHHHHhhhHHHHHHHHHHh
Q 012626 93 LGVGIGFGNQAVPLYLSEMAPTHLRGGLNMM---FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGI 169 (459)
Q Consensus 93 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 169 (459)
.|++.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+ .....+..|||+.|++.+++.++..+..+
T Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS--MPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT--STHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876666 899999999999998 44555567899999998888776665554
Q ss_pred c
Q 012626 170 L 170 (459)
Q Consensus 170 ~ 170 (459)
+
T Consensus 197 ~ 197 (524)
T 2xut_A 197 L 197 (524)
T ss_dssp S
T ss_pred H
Confidence 4
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=2.2e-30 Score=243.77 Aligned_cols=360 Identities=12% Similarity=0.054 Sum_probs=220.0
Q ss_pred CCCCCccccCchhHHHHHHhHHHHHHHhhhhhhhhhhhccchhHHHHHHHHHHHHHH---HHHHHHhH-HHHHHHHHHHh
Q 012626 19 AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAA---LNAAAANL-AMLLTGRILLG 94 (459)
Q Consensus 19 ~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~---~~~~~~~~-~~l~~~r~l~G 94 (459)
..+++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+++++.. ...+++.. ..+...+.+.|
T Consensus 32 ~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (417)
T 2cfq_A 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGG 111 (417)
T ss_dssp HHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667899999999999999999999999999999999999999998887765322 12233322 12455677777
Q ss_pred hcccccchhhhHHHHhccCC--CcchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHhhhHHHHHHHHHHhccC
Q 012626 95 VGIGFGNQAVPLYLSEMAPT--HLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLP 172 (459)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 172 (459)
++.+...+.....+.++.++ ++|+...+.......+|..++|.++. ...+ .+||+.|++.++..++..+..++.+
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~--~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 112 IYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG--IMFT-INNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp SSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH--HHHH-HCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH--HHHH-hchhHHHHHHHHHHHHHHHHHHHcC
Confidence 76665555555555555543 34566677777777888888888843 3322 4799999988777655555544444
Q ss_pred CChHHHHhhCcHHHHHHHHHHHhCCCcccHHHHHHHHHHHhhcccCCchHHHhcccchhHHHHHHHHHHHhhhcchHHHH
Q 012626 173 ETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSIL 252 (459)
Q Consensus 173 e~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (459)
|+|+. +.+.++ ..+ .+.++.....+++.++++..+.. .+..+.....+....
T Consensus 189 ~~~~~---~~~~~~----------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 189 TDAPS---SATVAN----------AVG-----------ANHSAFSLKLALELFRQPKLWFL----SLYVIGVSCTYDVFD 240 (417)
T ss_dssp CCCSC---SSCSSS----------SSS-----------SCCCCCCHHHHHHHTTCHHHHHH----HHHHHHHHHHHHHHH
T ss_pred ccccc---cccccc----------ccc-----------cccccccHHHHHHHhcCCchhhH----HHHHHHHHHHHHHHH
Confidence 33310 000000 000 00000000112344443332222 222122222233333
Q ss_pred HhHHHHHHh-cCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhhhHHHHHHHHHHHHHHhhccCCCccc
Q 012626 253 FYAPVLFQS-MGF---KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQEL 328 (459)
Q Consensus 253 ~~~~~~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (459)
.+.|.++.+ ++. +....+.......++.+++.++.+++.||++||+.+..+....+++.+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~----------- 309 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------- 309 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 445666554 332 23445677777778888999999999999999998877666655543333211
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 012626 329 SKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSIT-VAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAG 407 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
++.+..+....+.+.+..... +..+.+++|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++...+.+.+
T Consensus 310 --~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 --TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp --CSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 112222222222333322222 22357889999999999999994 88888999999999999999888766666655
Q ss_pred HHHHHHHhh-eeeccCC
Q 012626 408 WVTIMTIFV-YFFLPET 423 (459)
Q Consensus 408 ~~~l~~~~~-~~~~~~~ 423 (459)
++.+++.+. +...+|+
T Consensus 387 ~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHhhhcCC
Confidence 555544443 3444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=1.1e-13 Score=131.25 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhhhHHHHHHHH
Q 012626 233 LVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQV 312 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 312 (459)
.+....+..+........+....|.+.+++ .+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 344444444444444455666778887788 9999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHhhccCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012626 313 IVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLT 392 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 392 (459)
+..+.... .++.+..++..++.+.+.+... +...+++.|.+|+++|+++.++.+....+|..++|.+.+.
T Consensus 108 ~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 108 FMGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHhhhhc---------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77651100 0223344444555555555443 4446888999999999999999999999999999999999
Q ss_pred HHhhcc-chhHHHHHHHHHH-HHHhheeeccCCC
Q 012626 393 LLCSFK-FGIFLFFAGWVTI-MTIFVYFFLPETK 424 (459)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~~l-~~~~~~~~~~~~~ 424 (459)
+.+..+ |...+.+.++..+ ..++..+..||++
T Consensus 178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 178 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 888888 8776666655444 3444445566543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.48 E-value=2.2e-13 Score=128.78 Aligned_cols=153 Identities=10% Similarity=-0.024 Sum_probs=118.5
Q ss_pred HHHHHHHHhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhhhHHHHHHHHHH
Q 012626 235 MAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
....+..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+....+++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33344444444444566677888888899999999999999999999999999999999999999999998888887776
Q ss_pred HHHHhhccCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012626 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
..... .++.+..++..++.+.+.+.... ....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 109 ~~~~~----------~~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 109 WPAAE----------IMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHH----------TTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred Hhccc----------cccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33210 12344445555566666554443 44688899999999999999999999999999999999988
Q ss_pred -hhcc
Q 012626 395 -CSFK 398 (459)
Q Consensus 395 -~~~~ 398 (459)
+..+
T Consensus 178 ~~~~~ 182 (438)
T 3o7q_A 178 LSNVP 182 (438)
T ss_dssp HTSSC
T ss_pred hcccc
Confidence 4443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.42 E-value=1e-12 Score=121.51 Aligned_cols=169 Identities=13% Similarity=0.107 Sum_probs=128.4
Q ss_pred HhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhhhhhhHHHHHHHHHHHHHHhhc
Q 012626 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 85 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----
Confidence 3334444555666777778899999999999999999999999999999999999999999888888877766654
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 012626 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (459)
++.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|..
T Consensus 86 ---------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 155 (375)
T 2gfp_A 86 ---------SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA 155 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHH
Confidence 2233344444444554443 334446788899999999999999999999999999999999988878877
Q ss_pred HHHHHHHHHHHHHh-heeeccCCC
Q 012626 402 FLFFAGWVTIMTIF-VYFFLPETK 424 (459)
Q Consensus 402 ~~~~~~~~~l~~~~-~~~~~~~~~ 424 (459)
.+...++..+...+ ..+..||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHCcccC
Confidence 66666555544444 445556544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.40 E-value=6.6e-13 Score=127.51 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=122.2
Q ss_pred HHHhhhcchHHHHHhHHHHHH-h-----cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-hCCchhhhhhhHHHHHHHH
Q 012626 240 PMFQILTGINSILFYAPVLFQ-S-----MGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMITCQV 312 (459)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~ 312 (459)
..+.....+.....+.+.+++ + +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.....++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 333333344455455555544 4 89999999999999999999999999999999 8999999998888777766
Q ss_pred HHHHHHhhccCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhh--hhhhhHHHHHHHHHHHHHHHHHH
Q 012626 313 IVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLET--RSAGQSITVAVNLFFTFVIAQIF 390 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~ 390 (459)
+.... ++.+...+..++.+.+.+... +...+++.|.+|+++ |+.+.++.+....+|..++|.+.
T Consensus 101 ~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 101 VLALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 55432 223344444555555555443 444688899999888 77888889999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHhhee
Q 012626 391 LTLLCSFKFGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 418 (459)
+.+.+..+|...+...++..+++.+...
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777776665555544433
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.38 E-value=3.5e-12 Score=123.52 Aligned_cols=159 Identities=12% Similarity=0.074 Sum_probs=118.2
Q ss_pred chHHHHHhHHHHHH-hcC------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-CCchhhhhhhHHHHHHHHHHHHHH
Q 012626 247 GINSILFYAPVLFQ-SMG------FKGDASLYSSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVSIIL 318 (459)
Q Consensus 247 ~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
.+.....+.+.++. ++| +++.+.++......++..++.++.|+++||+ |||+.+..+.....++.++....
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~- 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF- 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-
Confidence 44445555665554 588 9999999999999999999999999999999 99999988888777776665542
Q ss_pred hhccCCCccccchhhhHHHHHHHHHHHHHhhcccccccccccccCChhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHh
Q 012626 319 GLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSI---TVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~~~~ 395 (459)
..+.+..+...++.+.+.+.. .+...+++.|.+|+++|+++.+. .+....+|..++|.+.+.+.+
T Consensus 106 -----------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 106 -----------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred -----------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112334444445555555543 34446888999999999776666 888999999999999999998
Q ss_pred hccchhHHHHHHHHHHHHHhhee
Q 012626 396 SFKFGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~l~~~~~~~ 418 (459)
..+|...+.+.+++.+++.+...
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 88887777666665555544433
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=4.8e-13 Score=125.43 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=121.5
Q ss_pred cCchhHHHHHHhHHHHHHHhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccchhhhH
Q 012626 27 YDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPL 106 (459)
Q Consensus 27 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (459)
.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888899999999999999999999999998888888777777778888888888888887777777789
Q ss_pred HHHhccCCCcchHHHHH-HHHHHHHHHHHHHHHhhhhhccccchhHHHHHhhhHHHHHHHHHHhc-cCCCh
Q 012626 107 YLSEMAPTHLRGGLNMM-FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL-LPETP 175 (459)
Q Consensus 107 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~p 175 (459)
++.|.+|++.|+.+.++ ++....+|.+++|.+ .+...+..|++..|.+.+++.++..+..++ .||++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l--~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH--HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999998 478888999999998 455555668899999888888777665544 56654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.11 E-value=7.4e-10 Score=106.20 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=106.9
Q ss_pred ccccCchhHHHHHHhHHHHHHHhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHH-----hHHHHH-HHHHHHhhcc
Q 012626 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA-----NLAMLL-TGRILLGVGI 97 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~-~~r~l~G~~~ 97 (459)
..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...+. +.-+..+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 384 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA- 384 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-
Confidence 3455666666777777888889999999999999999999999888888777665442 111222 222222322
Q ss_pred cccchhhhHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhh----ccccchhHHHHHhhhHHHHHHHHHH-hccC
Q 012626 98 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ----KLETWGWRLSLGLAAAPALMMTVGG-ILLP 172 (459)
Q Consensus 98 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~~~----~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~ 172 (459)
....+....+.+|.+|.+.|+.++++......+|..+++.+..... .....++.+.|++.++++++..+.. +++|
T Consensus 385 ~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 385 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 2344677889999999999999999999999999888876621111 1122356677888888887776654 6689
Q ss_pred CCh
Q 012626 173 ETP 175 (459)
Q Consensus 173 e~p 175 (459)
||.
T Consensus 465 ETk 467 (491)
T 4gc0_A 465 ETK 467 (491)
T ss_dssp CCT
T ss_pred CCC
Confidence 986
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=59.91 E-value=2.9 Score=19.48 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.1
Q ss_pred hhhhhhhhccchhH
Q 012626 49 VASPVTRDYGRRAS 62 (459)
Q Consensus 49 ~~g~l~dr~Grr~~ 62 (459)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=26.23 E-value=1.4e+02 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=16.3
Q ss_pred HhHHHHHHHhhhhhhhhhhhccc
Q 012626 37 SSLYLAGLVASFVASPVTRDYGR 59 (459)
Q Consensus 37 s~~~l~~~i~~~~~g~l~dr~Gr 59 (459)
.-|.+|..++..+.|++.||..+
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHccc
Confidence 34566777777888888887654
Done!