Query 012627
Match_columns 459
No_of_seqs 467 out of 1223
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 13:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.1E-46 7E-51 361.8 35.4 404 25-442 49-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.7E-37 9.2E-42 294.8 14.5 366 24-422 56-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.7E-34 9.3E-39 272.9 23.7 343 23-417 53-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.8E-32 9.5E-37 262.9 26.0 394 23-426 46-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.7E-33 5.8E-38 261.7 5.7 336 23-411 27-365 (375)
6 2xut_A Proton/peptide symporte 100.0 1.5E-27 5E-32 231.8 22.7 143 27-171 50-197 (524)
7 2cfq_A Lactose permease; trans 99.9 1.3E-27 4.6E-32 224.7 10.1 357 24-426 36-404 (417)
8 3o7q_A L-fucose-proton symport 99.4 9.5E-13 3.3E-17 124.4 11.2 145 241-396 33-177 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.3 4.6E-12 1.6E-16 120.1 12.0 147 24-172 281-433 (451)
10 2cfq_A Lactose permease; trans 99.3 1.5E-12 5.1E-17 122.1 7.1 145 30-176 258-404 (417)
11 2gfp_A EMRD, multidrug resista 99.3 5.8E-12 2E-16 116.4 10.4 171 242-426 8-179 (375)
12 4aps_A DI-OR tripeptide H+ sym 99.3 3.9E-12 1.3E-16 122.1 8.7 165 242-420 21-194 (491)
13 2xut_A Proton/peptide symporte 99.3 2.9E-11 9.9E-16 117.0 13.8 168 242-422 20-198 (524)
14 4gc0_A D-xylose-proton symport 99.1 4.4E-10 1.5E-14 107.8 13.3 149 28-176 309-467 (491)
15 2g9p_A Antimicrobial peptide l 42.6 6.3 0.00022 18.4 0.3 13 51-63 3-15 (26)
16 3arc_T Photosystem II reaction 23.8 81 0.0028 16.4 2.5 9 169-177 20-28 (32)
17 4dve_A Biotin transporter BIOY 21.0 2E+02 0.0067 22.9 5.6 24 38-61 100-123 (198)
18 3d9s_A Aquaporin-5, AQP-5; aqu 20.0 1.3E+02 0.0044 25.3 4.7 7 416-422 219-225 (266)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.1e-46 Score=361.76 Aligned_cols=404 Identities=27% Similarity=0.476 Sum_probs=319.0
Q ss_pred ccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHH------------------hhhhHHH
Q 012627 25 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNA------------------CAVHISM 86 (459)
Q Consensus 25 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 86 (459)
..+.++.+.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++ +++|++.
T Consensus 49 ~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 49 SESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128 (491)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence 3355677889999999999999999999999999999999999999999999998 4789999
Q ss_pred HHHHHHHhhhhhhhhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccc------cCchhhHHHHhhHH
Q 012627 87 LLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKI------HPWGWRLSLGLATV 160 (459)
Q Consensus 87 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~------~~~gwr~~f~~~~~ 160 (459)
++++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++...... ...+||+.+.+..+
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999886554332 23579999999999
Q ss_pred HHHHHHHHhcccCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHH
Q 012627 161 PATLMFVGGLFLPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALG 240 (459)
Q Consensus 161 ~~~~~~~~~~~l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (459)
+.++..+..+++||||+|+..+++.+++++.+++....+..+++..+..+...++++.. . ... ....++......
T Consensus 209 ~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~- 283 (491)
T 4gc0_A 209 PALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-G--RLL-MFGVGVIVIGVM- 283 (491)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T--HHH-HSCCTHHHHHHH-
T ss_pred hhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-h--HHH-HhcccHHHHHHH-
Confidence 98888888899999999999999999999988877655443333332222222221111 1 111 122233333333
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
...+.+..+.+.+..|.|.+.+..+.+...........++..+++.++++++.||+|||+.+..+.....++++.+....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 56677788888889999999888888877777788888899999999999999999999998888777777766655443
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLK 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (459)
.. ....+..++...++..+++.++.++.+.+.+|++|++.|+++.|+.+..+++++.+++.+++.+.+...
T Consensus 364 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~ 434 (491)
T 4gc0_A 364 YT---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW 434 (491)
T ss_dssp HT---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred hc---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122344455555666677777888888899999999999999999999999999999988877644321
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccc
Q 012627 401 -------FGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWF 442 (459)
Q Consensus 401 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (459)
...++++++++++..++.++++||||++++||+|+..|++.+
T Consensus 435 ~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 435 LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 234567777788888888899999999999999988876544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.7e-37 Score=294.79 Aligned_cols=366 Identities=13% Similarity=0.056 Sum_probs=263.4
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHh----hhhHHHHHHHHHHhhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNAC----AVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g 99 (459)
+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+
T Consensus 56 ~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 134 (451)
T 1pw4_A 56 EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 134 (451)
T ss_dssp SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhh
Confidence 445 78888999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCch-hhHHHHhhHHHHHHHHHH-hcccCCChh
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVG-GLFLPETPN 177 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~g-wr~~f~~~~~~~~~~~~~-~~~l~e~p~ 177 (459)
...+...+++.|++|+++|++++++...+.++|.+++|.++.... +..| ||+.|++.+++.++..++ .+++||+|+
T Consensus 135 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 135 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999999999999999964433 3456 999999999888776544 566898886
Q ss_pred hHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHh-hhcCCCchHHHHHHHhHHHhhcchhHHHHh
Q 012627 178 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLF-KKKNRPQLVIGALGIPAFQQLTGMNSILFY 256 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (459)
....+++.++. .+.+.+ . + ++++.+.+.++.. +.....+...... +..+...........+
T Consensus 213 ~~~~~~~~~~~----------~~~~~~---~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 213 SCGLPPIEEYK----------NDYPDD---Y-N---EKAEQELTAKQIFMQYVLPNKLLWYIA-IANVFVYLLRYGILDW 274 (451)
T ss_dssp TTCCCSCTTTC----------CC--------------------CCTHHHHHHTSSCHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hcCCCChhhhc----------cccccc---c-h---hhhhcccccccchHHHHHcCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 43221111100 000000 0 0 0001112222221 1111122222222 4455555666778889
Q ss_pred HHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh--CCcceeehhhHHHH-HHHHHHHHHHHHHhcCCCCCCc
Q 012627 257 APVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKF--GRRAFFLEAGTEMI-IYMVIVAITLALEFGEGKPLPK 332 (459)
Q Consensus 257 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 332 (459)
.|.++++ +|+++.+.+.......++.+++.++.+++.||+ +||+.+..+..+.. ++.+++.. .+.
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 343 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-----------NPA 343 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-----------CCT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-----------hcc
Confidence 9999987 899999999999999999999999999999999 88886654443333 22222111 011
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 333 GIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLL-FTALIAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
...+.......+.+.+.+... +....+..|.+|++.|+++.|+.+....+ +..+++.+.+.+.+..++...+...+++
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHH-HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 123333444444444444333 33355668999999999999999999999 9999999999999988876666655555
Q ss_pred HHHHHHHHHhc
Q 012627 412 VIMSAFIYFFL 422 (459)
Q Consensus 412 ~~~~~~~~~~~ 422 (459)
.+++.+...+.
T Consensus 423 ~~~~~~~~~~~ 433 (451)
T 1pw4_A 423 SILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.7e-34 Score=272.93 Aligned_cols=343 Identities=13% Similarity=0.147 Sum_probs=253.7
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHH---HhhhhHHHHHHHHHHhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIG 99 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g 99 (459)
.+++|.+..+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++ +++++++.++++|++.|++.+
T Consensus 53 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 132 (438)
T 3o7q_A 53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG 132 (438)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHH
Confidence 45678889999999999999999999999999999999999999999999999999 888999999999999999999
Q ss_pred hhcchhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCch------------------------hhHHH
Q 012627 100 FGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG------------------------WRLSL 155 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~g------------------------wr~~f 155 (459)
...+...+++.|++|+++|++++++.+.+.++|.++++.++.......... ||+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 212 (438)
T 3o7q_A 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY 212 (438)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999965444122112 99999
Q ss_pred HhhHHHHHHHHHHhcc--cCCChhhHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCc
Q 012627 156 GLATVPATLMFVGGLF--LPETPNSLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQ 233 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~--l~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (459)
++.+++.++..+..++ .||+++...++++ +++.+.+++++++++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 262 (438)
T 3o7q_A 213 MIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------------------------QGSFSASLSRLARIRHWRW 262 (438)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------------------------------TTSHHHHHHHHTTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccccccc------------------------------ccchhhhHHHHHhChHHHH
Confidence 8887776665444333 5665531100000 0001123345555443222
Q ss_pred hHHHHHHHhHHHhhcchhHHHHhHHHH-HHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHH
Q 012627 234 LVIGALGIPAFQQLTGMNSILFYAPVI-FQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMII 311 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 311 (459)
.. +..+...........+.|.+ +++ +|+++.+++.......++.+++.++.+++.||++||+.+..+..+..+
T Consensus 263 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 263 AV-----LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22 33344444556677888988 877 599999999999999999999999999999999999987776666555
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHH
Q 012627 312 YMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQA 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (459)
+.++.... + . .+ ......+.+++.+... +....+..|.+|++ ++.+.++.. .+.+++.++|.+
T Consensus 338 ~~~~~~~~-----------~-~-~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 338 LCLISAFA-----------G-G-HV-GLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHC-----------C-H-HH-HHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHc-----------C-C-cH-HHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 54443321 1 1 12 2223344444444444 44466667888876 888888776 677999999999
Q ss_pred HHHHHhhhh-HHHHHHHHHHHHHHHHH
Q 012627 392 FLAALCHLK-FGIFLVFGGLVVIMSAF 417 (459)
Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~~~~~~ 417 (459)
.+.+.+..+ +...+.+.+++.+...+
T Consensus 401 ~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 401 MGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999887 66555555544444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.8e-32 Score=262.93 Aligned_cols=394 Identities=17% Similarity=0.105 Sum_probs=251.0
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcc-cccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFG 101 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 101 (459)
++++|.|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45578889999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc-CCC---
Q 012627 102 NQAVPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PET--- 175 (459)
Q Consensus 102 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l-~e~--- 175 (459)
.+...+++.|++|+++ |+.++++++.+.++|..++|.++.... +..|||+.|++.++..++..+..++. |+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ--EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 777888899999999999999965443 34589999999877766655443322 211
Q ss_pred -hhhHHhcCCHHHHHHHHHH----------------HcCCCcchHHHHHHHHH-----HH-HHhhhcCc-hhHHhhhcCC
Q 012627 176 -PNSLVEQGKLDEARKVLEK----------------VRGTANVDAEFSDLIDA-----SN-AARAIKNP-FRNLFKKKNR 231 (459)
Q Consensus 176 -p~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~-~~~~~~~~~~ 231 (459)
.+....+.+.++.++..+. ..+..+.+......... .. .....+.. .....+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV 283 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 1111111223333332222 11111111111000000 00 00000000 0001111111
Q ss_pred CchHHHHHHHhHHHhhcchhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceee-----hh
Q 012627 232 PQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL-----EA 305 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~ 305 (459)
. . .... +........+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+
T Consensus 284 ~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 284 S-Y-IPLF-IAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp T-H-HHHH-HHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred H-H-HHHH-HHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 1 1 1111 22233333334445566777766 6777677888888889999999999999999999998765 44
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHH
Q 012627 306 GTEMIIYMVIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFT 385 (459)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 385 (459)
..+..++..++....... ... .....+.......+.+.+.+... +....+..|.+|++.|+++.|+.+....++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALY-GTS---GKVSPLWLVGSWALVILGEMLIS-PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp HHHHHHHHTTTHHHHHHC-CCC---TTCCTHHHHHHHHHHHHHHHTTT-THHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCC---CCccHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 444444444433322110 000 11122333444445555544333 4456677899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012627 386 ALIAQAFLAALCHLKFGIFLVFGGLVVIMSAFIYFFLPETK 426 (459)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
.+++.+.+.+.+......+...++++.+.+++.+...++.+
T Consensus 436 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 436 ALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876654445555555555555555555444433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.98 E-value=1.7e-33 Score=261.73 Aligned_cols=336 Identities=15% Similarity=0.151 Sum_probs=251.4
Q ss_pred ccccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhc
Q 012627 23 TDYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+...
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 106 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGG 106 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHH-HhcccCCChhhHHh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFV-GGLFLPETPNSLVE 181 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~l~e~p~~~~~ 181 (459)
+...+++.|++|+++|++++++.+.+.++|..++|.++... .+..+||+.|++.++..++..+ ..+++||+++...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL--DTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc
Confidence 99999999999999999999999999999999999995544 3446899999999888877766 35568887642100
Q ss_pred cCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhHHHHH
Q 012627 182 QGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIF 261 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (459)
+ ++.+.++++.++++..+... +..+...........+.|.++
T Consensus 185 --~-------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T 2gfp_A 185 --R-------------------------------TRLLTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLM 226 (375)
T ss_dssp --C-------------------------------CCTTTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSS
T ss_pred --c-------------------------------ccHHHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 0 01133455566554433222 233344445566677778777
Q ss_pred HH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHH-HHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 012627 262 QS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTE-MIIYMVIVAITLALEFGEGKPLPKGIGIFLV 339 (459)
Q Consensus 262 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (459)
++ +|.++.+.+.......++.+++.++.+++.||.+++ ...+... ...+......... .....+...
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 295 (375)
T 2gfp_A 227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVWTLL 295 (375)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHHHHH
Confidence 66 788888899999999999999999999999998762 2222211 1111111111100 001233344
Q ss_pred HHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012627 340 IVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLV 411 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
....+.+.+.+... +....+..|..| +.|+++.|+.+....++..+++.+.+.+.+..++...+...++.
T Consensus 296 ~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 296 VPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 44555555555444 444666679988 78999999999999999999999999988877766665554433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.5e-27 Score=231.83 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=127.6
Q ss_pred ccCchhHHHHHHHhHHHHHHHHHHhhhhhccc-ccchhhhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhhhhhhcch
Q 012627 27 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQA 104 (459)
Q Consensus 27 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 104 (459)
+.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+.
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh
Confidence 37888899999999999999999999999999 999999999999999999999999 9999999999999999999999
Q ss_pred hhHHHHhcCCCccchhHHHH---HHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcc
Q 012627 105 VPLYLSEMAPAKIRGAVNQL---FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 171 (459)
Q Consensus 105 ~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 171 (459)
..+++.|++|+++|+++.+. ...+.++|.+++|.++.. ..+..|||+.|++.++..++..+..++
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~--l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL--LLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH--HHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877666 999999999999998443 334468999999988887766555433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=1.3e-27 Score=224.74 Aligned_cols=357 Identities=13% Similarity=0.072 Sum_probs=214.5
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHH---HHHhhhhHH-HHHHHHHHhhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI---LNACAVHIS-MLLLGRIFLGMGIG 99 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~---~~~~~~~~~-~l~~~r~l~G~~~g 99 (459)
+++|.|+.+.|++.+.+.+++.++++++|+++||+|||+++.++..+++++.. ...+++... .+...+++.|++.+
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 115 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999999999998887765332 223333221 24556777777666
Q ss_pred hhcchhhHHHHhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhcccCCChh
Q 012627 100 FGNQAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPN 177 (459)
Q Consensus 100 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l~e~p~ 177 (459)
...+.....+.++.++ ++|+...+....+.++|..++|.++..... .+||+.|++.++..++..+..++.||+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T 2cfq_A 116 FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred HHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 6655555555555543 456777888878888899999988654432 36999999888776655555555443331
Q ss_pred hHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhcCchhHHhhhcCCCchHHHHHHHhHHHhhcchhHHHHhH
Q 012627 178 SLVEQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYA 257 (459)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (459)
. +.+.++.+ ..+.. +....++++.++++..+... +..+.....+.....+.
T Consensus 193 ~---~~~~~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 243 (417)
T 2cfq_A 193 S---SATVANAV-------GANHS--------------AFSLKLALELFRQPKLWFLS-----LYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp C---SSCSSSSS-------SSCCC--------------CCCHHHHHHHTTCHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred c---cccccccc-------ccccc--------------cccHHHHHHHhcCCchhhHH-----HHHHHHHHHHHHHHHHH
Confidence 1 00000000 00000 00001123344433222211 11122222333344557
Q ss_pred HHHHHH-cCC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHHHHhcCCCCCCch
Q 012627 258 PVIFQS-LGF---GSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLALEFGEGKPLPKG 333 (459)
Q Consensus 258 ~~~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (459)
|.++++ ++. +....+.......++.+++.++.+++.||+|||+.+..+..+..+..+..... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------------~ 310 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------------T 310 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------------C
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------------c
Confidence 777655 331 23344666777778888999999999999999997765554444433222110 1
Q ss_pred hHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012627 334 IGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVV-VCNNLLFTALIAQAFLAALCHLKFGIFLVFGGLVV 412 (459)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (459)
..+..++...+...+..... +..+.+.+|.+|++.|+++.++. +....+++.++|.+.|.+.+..++...+...+++.
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 11222222222222222222 22355678999999999999984 78888999999999999998777665555555544
Q ss_pred HHHHHH-HHhcCCCC
Q 012627 413 IMSAFI-YFFLPETK 426 (459)
Q Consensus 413 ~~~~~~-~~~~~~~~ 426 (459)
+++.+. +...+|++
T Consensus 390 l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 390 LGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHTTSSCCSC
T ss_pred HHHHHHHHhhhcCCC
Confidence 444443 33344433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=9.5e-13 Score=124.39 Aligned_cols=145 Identities=8% Similarity=-0.108 Sum_probs=113.2
Q ss_pred HhHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHH
Q 012627 241 IPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITL 320 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 320 (459)
+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444455667778888888999999999999999999999999999999999999999888888777777663321
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012627 321 ALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAAL 396 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (459)
. ....+..++...+.+.+.+.... ....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.
T Consensus 113 ~----------~~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 113 E----------IMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp H----------TTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred c----------cccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 02234455555566666554443 34666789999999999999999999999999999999887
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.34 E-value=4.6e-12 Score=120.13 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=125.2
Q ss_pred cccccCchhHHHHHHHhHHHHHHHHHHhhhhhccc--ccchhhhHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHhhhhh
Q 012627 24 DYCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMVGSVSFF-IGAILNACA--VHISMLLLGRIFLGMGI 98 (459)
Q Consensus 24 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~ 98 (459)
+.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+.+.-++.|++.
T Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 360 (451)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999999999 99999888877776 666766666 47788888899999999
Q ss_pred hhhcchhhHHHHhcCCCccchhHHHHHHHHHHH-HHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHHhccc
Q 012627 99 GFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 172 (459)
Q Consensus 99 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~l 172 (459)
+...+....++.|.+|+++|++++++......+ |..++|.+.+.. .+..||+..|++.++..++..++.+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT--VDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999998999999999999999999999999999 999999995443 344579999999888887776655443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.32 E-value=1.5e-12 Score=122.12 Aligned_cols=145 Identities=10% Similarity=0.076 Sum_probs=121.2
Q ss_pred chhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhcchhhHHH
Q 012627 30 NQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLYL 109 (459)
Q Consensus 30 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 109 (459)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888889999999999999999999999999998888888888888888888888888888777777788899
Q ss_pred HhcCCCccchhHHHH-HHHHHHHHHHHHHHHHhccccccCchhhHHHHhhHHHHHHHHHH-hcccCCCh
Q 012627 110 SEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETP 176 (459)
Q Consensus 110 ~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p 176 (459)
.|.+|++.|+.+.++ ++....+|..++|.+++... +..|++..|.+.++..++..++ ....||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~--~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY--ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH--HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 58888899999999955433 3457889999888887777655 44467654
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.31 E-value=5.8e-12 Score=116.37 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=126.1
Q ss_pred hHHHhhcchhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVIVAITLA 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
..+.............|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 86 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-
Confidence 3344444555566667877788999999999999999999999999999999999999999988888777777665542
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012627 322 LEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSVVVCNNLLFTALIAQAFLAALCHLKF 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (459)
..+..+....+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++
T Consensus 87 ------------~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 87 ------------SLTVLIAASAMQGMGTGVGG-VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 22334444444555544333 44456668999999999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcCCCC
Q 012627 402 GIFLVFGGLVVIMSAF-IYFFLPETK 426 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 426 (459)
...+...++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 7665555444444333 344455543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.30 E-value=3.9e-12 Score=122.08 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=119.8
Q ss_pred hHHHhhcchhHHHHhHHHHHHH------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-hCCcceeehhhHHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQS------LGFGSGAALYSSVITGIALCIAALISMAFVDK-FGRRAFFLEAGTEMIIYMV 314 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~ 314 (459)
..+.....++....+.+.++++ +|.+..+.++......++..++.++.|+++|| +|||+.+..+..+..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3444445556666677777654 89999999999999999999999999999999 8999998877776666665
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCccc--ccccchHHHHHHHHHHHHHHHHH
Q 012627 315 IVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEM--RSAGQSVVVCNNLLFTALIAQAF 392 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~ 392 (459)
+.... +..+..++...+.+.+.+... +....++.|.+|++. |+.+.++.+....+|..+++.+.
T Consensus 101 ~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 101 VLALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 54431 112334444445555544443 444666789999988 77788888899999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012627 393 LAALCHLKFGIFLVFGGLVVIMSAFIYF 420 (459)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
+.+.+..++...+...++..+++.+...
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877766665555554444433
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=2.9e-11 Score=117.02 Aligned_cols=168 Identities=12% Similarity=0.039 Sum_probs=120.3
Q ss_pred hHHHhhcchhHHHHhHHHHHHH-cC------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-CCcceeehhhHHHHHHH
Q 012627 242 PAFQQLTGMNSILFYAPVIFQS-LG------FGSGAALYSSVITGIALCIAALISMAFVDKF-GRRAFFLEAGTEMIIYM 313 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~ 313 (459)
..+.....++....+++.++++ +| +++.+.++......++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444444556666777777754 88 9999999999999999999999999999999 99998887776666665
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHhhcccccceeeecccCCcccccccchH---HHHHHHHHHHHHHH
Q 012627 314 VIVAITLALEFGEGKPLPKGIGIFLVIVICLFVLAYGRSWGPLGWLVPSELFPLEMRSAGQSV---VVCNNLLFTALIAQ 390 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~~~~~ 390 (459)
++.... + ...+..++...+.+.+.+... +....+..|.+|++.|++..+. .+....+|..+++.
T Consensus 100 ~~~~~~-----------~-~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~ 166 (524)
T 2xut_A 100 AFLAIF-----------E-HSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL 166 (524)
T ss_dssp HHHHHT-----------S-SCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----------c-ccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554432 1 023344444555555555443 4446667899999999876666 88889999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 012627 391 AFLAALCHLKFGIFLVFGGLVVIMSAFIYFFL 422 (459)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (459)
+.+.+.+..++...+.+.+++.+++.+.....
T Consensus 167 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 167 SMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp TSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998887777766666555555554444433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.12 E-value=4.4e-10 Score=107.78 Aligned_cols=149 Identities=19% Similarity=0.111 Sum_probs=104.5
Q ss_pred cCchhHHHHHHHhHHHHHHHHHHhhhhhcccccchhhhHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHhhhhhhhhc
Q 012627 28 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACA-----VHISMLLLGRIFLGMGIGFGN 102 (459)
Q Consensus 28 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~ 102 (459)
.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..+.......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHH
Confidence 334445667777788889999999999999999999999988888877766543 122222222222222222344
Q ss_pred chhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcccc----ccCchhhHHHHhhHHHHHHHHHH-hcccCCCh
Q 012627 103 QAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFVG-GLFLPETP 176 (459)
Q Consensus 103 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~~~~~~----~~~~gwr~~f~~~~~~~~~~~~~-~~~l~e~p 176 (459)
+....+.+|.+|.+.|++++++......+|..+++.+...... ....++...|++.++++++..+. ++++|||.
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 6677899999999999999999999999998888766322211 11234567788888888777554 56799985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=42.60 E-value=6.3 Score=18.36 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.2
Q ss_pred hhhhhcccccchh
Q 012627 51 ASYVTRSRGRRAS 63 (459)
Q Consensus 51 ~g~l~dr~Grr~~ 63 (459)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5788889998864
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.84 E-value=81 Score=16.42 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=6.1
Q ss_pred hcccCCChh
Q 012627 169 GLFLPETPN 177 (459)
Q Consensus 169 ~~~l~e~p~ 177 (459)
..+.+|+|+
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 455788875
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.96 E-value=2e+02 Score=22.91 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHhhhhhcccccc
Q 012627 38 SSLYFAGLVSTFGASYVTRSRGRR 61 (459)
Q Consensus 38 s~~~l~~~i~~~~~g~l~dr~Grr 61 (459)
.-|.+|+.++..+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 456677778888888888887544
No 18
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=20.03 E-value=1.3e+02 Score=25.33 Aligned_cols=7 Identities=57% Similarity=1.431 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 012627 416 AFIYFFL 422 (459)
Q Consensus 416 ~~~~~~~ 422 (459)
.+++.++
T Consensus 219 ~~~y~~l 225 (266)
T 3d9s_A 219 AILYFYL 225 (266)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3344333
Done!