Query 012628
Match_columns 459
No_of_seqs 310 out of 2278
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h51_A Aspartate aminotransfer 100.0 3.8E-67 1.3E-71 522.3 37.2 400 54-459 16-418 (420)
2 3k7y_A Aspartate aminotransfer 100.0 4.2E-63 1.4E-67 493.1 40.9 397 57-457 3-404 (405)
3 3meb_A Aspartate aminotransfer 100.0 3.4E-58 1.2E-62 465.8 42.6 402 56-458 22-444 (448)
4 7aat_A Aspartate aminotransfer 100.0 6.5E-58 2.2E-62 457.2 39.5 399 57-456 2-401 (401)
5 4f4e_A Aromatic-amino-acid ami 100.0 3.7E-57 1.3E-61 454.7 41.7 397 56-456 22-420 (420)
6 4eu1_A Mitochondrial aspartate 100.0 1.5E-55 5.1E-60 441.4 35.3 394 57-456 15-409 (409)
7 3fsl_A Aromatic-amino-acid ami 100.0 3.7E-54 1.3E-58 429.3 42.8 393 59-455 2-397 (397)
8 1yaa_A Aspartate aminotransfer 100.0 3.5E-52 1.2E-56 417.4 40.6 401 57-458 3-411 (412)
9 1ajs_A Aspartate aminotransfer 100.0 3.9E-52 1.3E-56 416.9 40.9 401 58-459 5-412 (412)
10 2q7w_A Aspartate aminotransfer 100.0 3.4E-51 1.2E-55 407.7 38.9 395 59-455 2-396 (396)
11 2ay1_A Aroat, aromatic amino a 100.0 8.4E-50 2.9E-54 397.5 39.5 391 59-454 2-392 (394)
12 3rq1_A Aminotransferase class 100.0 4.9E-48 1.7E-52 388.0 33.5 381 61-458 12-415 (418)
13 3dyd_A Tyrosine aminotransfera 100.0 1.1E-47 3.6E-52 386.6 32.2 375 59-458 28-424 (427)
14 1b5p_A Protein (aspartate amin 100.0 8.5E-48 2.9E-52 382.1 28.2 359 64-457 10-384 (385)
15 3t18_A Aminotransferase class 100.0 2.8E-47 9.6E-52 381.8 29.1 381 59-458 9-410 (413)
16 3fvs_A Kynurenine--oxoglutarat 100.0 1.6E-46 5.3E-51 377.4 24.4 371 58-458 6-422 (422)
17 3b46_A Aminotransferase BNA3; 100.0 2.9E-45 1E-49 370.9 27.2 359 65-454 33-443 (447)
18 3tcm_A Alanine aminotransferas 100.0 4.2E-44 1.4E-48 367.0 36.1 341 103-458 108-494 (500)
19 1gd9_A Aspartate aminotransfer 100.0 1.1E-44 3.6E-49 360.1 29.7 360 65-458 10-386 (389)
20 3h14_A Aminotransferase, class 100.0 2.2E-44 7.4E-49 358.2 31.9 356 61-458 7-382 (391)
21 3e2y_A Kynurenine-oxoglutarate 100.0 1.8E-45 6.3E-50 368.0 23.1 361 63-453 6-408 (410)
22 3jtx_A Aminotransferase; NP_28 100.0 2.2E-44 7.4E-49 358.6 30.4 339 80-455 27-395 (396)
23 1j32_A Aspartate aminotransfer 100.0 2E-44 6.8E-49 358.0 29.5 360 66-458 11-387 (388)
24 3aow_A Putative uncharacterize 100.0 1.5E-44 5E-49 365.6 28.5 362 63-457 59-444 (448)
25 2x5d_A Probable aminotransfera 100.0 8.4E-45 2.9E-49 363.7 25.8 344 82-458 36-398 (412)
26 3ele_A Amino transferase; RER0 100.0 1.2E-44 4E-49 360.9 24.5 339 82-458 34-396 (398)
27 3ihj_A Alanine aminotransferas 100.0 2.9E-43 9.8E-48 360.3 35.3 359 84-458 64-493 (498)
28 3nra_A Aspartate aminotransfer 100.0 2.5E-44 8.5E-49 359.4 25.2 344 84-458 40-405 (407)
29 2o1b_A Aminotransferase, class 100.0 2.6E-44 8.9E-49 359.3 25.0 342 82-458 46-403 (404)
30 1o4s_A Aspartate aminotransfer 100.0 1E-43 3.5E-48 353.2 28.9 357 63-457 19-388 (389)
31 3qgu_A LL-diaminopimelate amin 100.0 2.6E-43 9E-48 356.9 27.8 342 80-457 66-439 (449)
32 2x5f_A Aspartate_tyrosine_phen 100.0 3.5E-43 1.2E-47 353.9 27.8 360 83-459 47-430 (430)
33 1yiz_A Kynurenine aminotransfe 100.0 2.8E-43 9.5E-48 354.5 27.1 344 83-457 37-428 (429)
34 2o0r_A RV0858C (N-succinyldiam 100.0 1.7E-43 5.8E-48 354.1 24.8 341 83-457 25-395 (411)
35 1u08_A Hypothetical aminotrans 100.0 7.6E-43 2.6E-47 346.4 28.7 336 83-453 30-385 (386)
36 3fdb_A Beta C-S lyase, putativ 100.0 3.6E-43 1.2E-47 347.3 26.0 339 82-458 22-376 (377)
37 1bw0_A TAT, protein (tyrosine 100.0 1.9E-42 6.6E-47 346.9 31.0 370 67-458 16-413 (416)
38 2r2n_A Kynurenine/alpha-aminoa 100.0 1.1E-42 3.8E-47 349.8 29.1 371 61-458 10-424 (425)
39 1xi9_A Putative transaminase; 100.0 1.8E-42 6.1E-47 346.1 30.3 364 61-458 18-403 (406)
40 3ezs_A Aminotransferase ASPB; 100.0 1.9E-42 6.4E-47 342.2 29.5 349 66-458 5-375 (376)
41 3g0t_A Putative aminotransfera 100.0 5.5E-43 1.9E-47 353.1 26.1 352 81-457 42-436 (437)
42 2dou_A Probable N-succinyldiam 100.0 1.2E-42 4.2E-47 343.7 26.4 336 82-455 24-375 (376)
43 3piu_A 1-aminocyclopropane-1-c 100.0 1.6E-41 5.3E-46 342.5 34.0 354 77-458 31-432 (435)
44 3kax_A Aminotransferase, class 100.0 4.2E-42 1.4E-46 340.4 28.7 342 81-455 22-382 (383)
45 2z61_A Probable aspartate amin 100.0 6.4E-42 2.2E-46 337.8 28.9 344 66-456 10-369 (370)
46 1iay_A ACC synthase 2, 1-amino 100.0 5.4E-41 1.8E-45 337.8 36.1 348 83-458 36-427 (428)
47 3dzz_A Putative pyridoxal 5'-p 100.0 7.5E-42 2.6E-46 339.5 28.8 345 83-459 27-390 (391)
48 2gb3_A Aspartate aminotransfer 100.0 1E-41 3.5E-46 341.1 29.4 360 59-458 17-402 (409)
49 3ei9_A LL-diaminopimelate amin 100.0 6.1E-42 2.1E-46 345.1 27.1 335 82-457 55-427 (432)
50 2zc0_A Alanine glyoxylate tran 100.0 3.7E-41 1.3E-45 336.5 32.5 364 65-458 14-404 (407)
51 1vp4_A Aminotransferase, putat 100.0 3.6E-42 1.2E-46 346.1 25.2 362 66-458 29-418 (425)
52 3ppl_A Aspartate aminotransfer 100.0 5.2E-42 1.8E-46 345.1 26.4 349 82-458 32-420 (427)
53 4dq6_A Putative pyridoxal phos 100.0 1.5E-41 5.3E-46 337.2 28.0 341 82-456 31-391 (391)
54 1v2d_A Glutamine aminotransfer 100.0 1.1E-41 3.7E-46 337.5 25.9 333 83-458 25-371 (381)
55 1c7n_A Cystalysin; transferase 100.0 2.6E-41 8.9E-46 336.8 28.4 344 83-458 31-393 (399)
56 3d6k_A Putative aminotransfera 100.0 2.7E-41 9.2E-46 339.4 27.4 356 70-458 21-418 (422)
57 3ly1_A Putative histidinol-pho 100.0 2.7E-40 9.2E-45 324.0 33.3 326 81-457 14-351 (354)
58 3l8a_A METC, putative aminotra 100.0 6.7E-41 2.3E-45 336.4 27.0 344 82-457 60-421 (421)
59 3ez1_A Aminotransferase MOCR f 100.0 1.1E-40 3.7E-45 335.0 28.1 348 83-458 25-415 (423)
60 2zyj_A Alpha-aminodipate amino 100.0 3.1E-40 1.1E-44 328.9 31.0 354 66-458 18-393 (397)
61 1d2f_A MALY protein; aminotran 100.0 1.9E-40 6.6E-45 329.5 28.8 344 83-459 28-390 (390)
62 3f6t_A Aspartate aminotransfer 100.0 1.5E-41 5.1E-46 350.3 21.0 342 84-458 104-525 (533)
63 3get_A Histidinol-phosphate am 100.0 7.4E-40 2.5E-44 322.3 31.1 324 82-456 29-365 (365)
64 3asa_A LL-diaminopimelate amin 100.0 9.9E-41 3.4E-45 332.9 24.6 336 81-459 31-394 (400)
65 3g7q_A Valine-pyruvate aminotr 100.0 1E-40 3.5E-45 334.4 23.8 358 66-458 13-413 (417)
66 3euc_A Histidinol-phosphate am 100.0 1.8E-39 6E-44 319.9 30.6 324 82-456 29-366 (367)
67 3ffh_A Histidinol-phosphate am 100.0 3.3E-39 1.1E-43 317.5 30.8 321 82-455 31-363 (363)
68 3op7_A Aminotransferase class 100.0 1.4E-39 4.6E-44 321.7 26.6 312 109-458 47-371 (375)
69 2zy4_A L-aspartate beta-decarb 100.0 2.7E-40 9.3E-45 341.0 20.5 338 85-457 106-521 (546)
70 1fg7_A Histidinol phosphate am 100.0 3.2E-39 1.1E-43 316.9 26.1 314 83-454 29-354 (356)
71 3if2_A Aminotransferase; YP_26 100.0 1.4E-39 4.7E-44 329.0 23.7 365 66-458 13-440 (444)
72 3p1t_A Putative histidinol-pho 100.0 9.9E-38 3.4E-42 303.6 31.2 313 82-456 15-335 (337)
73 1lc5_A COBD, L-threonine-O-3-p 100.0 4.6E-38 1.6E-42 309.6 29.1 337 69-458 11-360 (364)
74 3b1d_A Betac-S lyase; HET: PLP 100.0 6.5E-42 2.2E-46 340.5 0.0 341 83-456 31-391 (392)
75 3cq5_A Histidinol-phosphate am 100.0 1.3E-37 4.3E-42 307.0 29.7 325 85-457 32-367 (369)
76 3ftb_A Histidinol-phosphate am 100.0 2.7E-37 9.4E-42 303.3 30.2 322 82-458 25-361 (361)
77 3hdo_A Histidinol-phosphate am 100.0 8.6E-37 2.9E-41 300.0 29.6 316 83-457 26-354 (360)
78 3bwn_A AT1G70560, L-tryptophan 100.0 5E-39 1.7E-43 319.5 13.6 323 82-457 21-386 (391)
79 1uu1_A Histidinol-phosphate am 100.0 2.8E-37 9.5E-42 300.5 23.5 309 83-454 19-334 (335)
80 2hox_A ALLIIN lyase 1; cystein 100.0 1.1E-37 3.7E-42 313.1 13.4 327 83-457 56-424 (427)
81 3fkd_A L-threonine-O-3-phospha 100.0 9.9E-36 3.4E-40 291.2 25.2 312 83-458 15-342 (350)
82 3a2b_A Serine palmitoyltransfe 100.0 3.5E-33 1.2E-37 278.0 28.3 329 82-458 42-392 (398)
83 1t3i_A Probable cysteine desul 100.0 4.7E-32 1.6E-36 271.3 28.9 327 83-458 27-413 (420)
84 1eg5_A Aminotransferase; PLP-d 100.0 3.3E-32 1.1E-36 269.1 23.8 320 94-458 5-376 (384)
85 1kmj_A Selenocysteine lyase; p 100.0 7.9E-32 2.7E-36 268.3 25.0 327 83-458 22-405 (406)
86 3tqx_A 2-amino-3-ketobutyrate 100.0 4E-31 1.4E-35 262.9 27.4 328 82-458 42-396 (399)
87 2dr1_A PH1308 protein, 386AA l 100.0 2E-31 6.7E-36 263.8 23.7 318 98-458 27-379 (386)
88 1e5e_A MGL, methionine gamma-l 100.0 1.7E-30 5.9E-35 259.0 30.5 315 84-457 19-394 (404)
89 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.3E-31 4.5E-36 263.7 22.1 324 82-459 6-371 (371)
90 1bs0_A Protein (8-amino-7-oxon 100.0 1E-30 3.4E-35 258.9 28.4 322 82-454 38-383 (384)
91 1svv_A Threonine aldolase; str 100.0 8E-31 2.7E-35 256.7 26.5 330 82-458 12-358 (359)
92 1vjo_A Alanine--glyoxylate ami 100.0 5.6E-31 1.9E-35 261.5 23.3 313 101-456 44-393 (393)
93 1sff_A 4-aminobutyrate aminotr 100.0 1.5E-31 5E-36 268.6 17.8 338 83-458 41-424 (426)
94 2z9v_A Aspartate aminotransfer 100.0 1.9E-30 6.6E-35 257.4 23.8 317 98-458 16-371 (392)
95 1elu_A L-cysteine/L-cystine C- 100.0 8E-31 2.7E-35 259.8 19.0 326 83-454 15-388 (390)
96 2bwn_A 5-aminolevulinate synth 100.0 2.1E-29 7.2E-34 250.9 29.3 329 84-458 47-400 (401)
97 4eb5_A Probable cysteine desul 100.0 3.2E-30 1.1E-34 254.7 22.8 321 93-458 3-373 (382)
98 1iug_A Putative aspartate amin 100.0 2.5E-30 8.6E-35 252.6 21.6 308 101-458 11-348 (352)
99 1jg8_A L-ALLO-threonine aldola 100.0 3.1E-30 1E-34 251.7 22.0 324 83-459 3-347 (347)
100 2huf_A Alanine glyoxylate amin 100.0 8.6E-30 2.9E-34 252.8 25.0 325 81-458 16-383 (393)
101 2eh6_A Acoat, acetylornithine 100.0 7.3E-30 2.5E-34 251.8 24.1 325 82-455 27-375 (375)
102 2ch1_A 3-hydroxykynurenine tra 100.0 5.3E-30 1.8E-34 254.6 23.3 312 102-458 29-383 (396)
103 3f9t_A TDC, L-tyrosine decarbo 100.0 7E-30 2.4E-34 253.2 24.0 320 102-456 42-396 (397)
104 3zrp_A Serine-pyruvate aminotr 100.0 1.1E-29 3.7E-34 251.0 24.4 315 101-458 12-363 (384)
105 1fc4_A 2-amino-3-ketobutyrate 100.0 2.1E-29 7.2E-34 250.8 25.5 324 82-458 44-397 (401)
106 3lvm_A Cysteine desulfurase; s 100.0 7.9E-30 2.7E-34 255.7 21.1 324 82-458 20-399 (423)
107 4adb_A Succinylornithine trans 100.0 1.1E-29 3.8E-34 253.2 22.0 328 82-458 38-400 (406)
108 2w8t_A SPT, serine palmitoyltr 100.0 5.2E-29 1.8E-33 250.3 27.0 327 82-458 63-415 (427)
109 1v72_A Aldolase; PLP-dependent 100.0 2.3E-29 7.9E-34 246.1 23.2 327 82-458 6-353 (356)
110 3ruy_A Ornithine aminotransfer 100.0 4.8E-29 1.7E-33 247.5 25.6 327 82-456 35-392 (392)
111 1m32_A 2-aminoethylphosphonate 100.0 1.8E-29 6.2E-34 247.6 21.6 323 84-458 4-365 (366)
112 2ez2_A Beta-tyrosinase, tyrosi 100.0 3.7E-28 1.3E-32 246.1 31.8 335 82-457 32-430 (456)
113 3kki_A CAI-1 autoinducer synth 100.0 1.5E-28 5E-33 245.6 27.4 323 82-458 58-404 (409)
114 4hvk_A Probable cysteine desul 100.0 4.9E-29 1.7E-33 245.8 23.6 319 94-458 4-373 (382)
115 1vef_A Acetylornithine/acetyl- 100.0 3.9E-29 1.3E-33 248.4 22.5 334 83-456 45-395 (395)
116 3i4j_A Aminotransferase, class 100.0 4.9E-29 1.7E-33 250.6 23.3 346 82-458 28-428 (430)
117 2ord_A Acoat, acetylornithine 100.0 4.7E-29 1.6E-33 248.1 22.8 325 82-457 39-396 (397)
118 3cai_A Possible aminotransfera 100.0 5.9E-29 2E-33 247.9 23.1 323 84-453 26-404 (406)
119 2eo5_A 419AA long hypothetical 100.0 1.3E-28 4.5E-33 246.7 25.4 331 83-458 42-418 (419)
120 3kgw_A Alanine-glyoxylate amin 100.0 5E-29 1.7E-33 247.0 21.9 312 102-458 34-388 (393)
121 3nnk_A Ureidoglycine-glyoxylat 100.0 6.2E-29 2.1E-33 248.0 22.7 310 102-458 24-390 (411)
122 3l44_A Glutamate-1-semialdehyd 100.0 2E-28 6.9E-33 246.5 26.0 335 82-458 54-430 (434)
123 3isl_A Purine catabolism prote 100.0 9.5E-29 3.3E-33 247.1 23.1 310 102-458 22-390 (416)
124 2rfv_A Methionine gamma-lyase; 100.0 9.4E-28 3.2E-32 238.8 29.3 313 86-453 23-395 (398)
125 2yrr_A Aminotransferase, class 100.0 1.2E-28 4.1E-33 240.5 22.2 309 102-457 11-352 (353)
126 1s0a_A Adenosylmethionine-8-am 100.0 4.3E-28 1.5E-32 243.7 25.6 338 83-458 43-424 (429)
127 3dxv_A Alpha-amino-epsilon-cap 100.0 1.2E-28 4.2E-33 248.5 21.6 339 82-458 42-425 (439)
128 1ax4_A Tryptophanase; tryptoph 100.0 7E-28 2.4E-32 244.8 26.9 342 82-457 33-440 (467)
129 3k28_A Glutamate-1-semialdehyd 100.0 1.6E-27 5.6E-32 239.5 28.3 335 82-459 52-428 (429)
130 2aeu_A Hypothetical protein MJ 100.0 3.9E-28 1.3E-32 239.5 23.1 315 84-458 29-371 (374)
131 3vax_A Putative uncharacterize 100.0 1.2E-29 4E-34 252.4 12.0 316 100-457 30-399 (400)
132 3fq8_A Glutamate-1-semialdehyd 100.0 5.3E-28 1.8E-32 242.9 23.5 329 82-458 51-427 (427)
133 3f0h_A Aminotransferase; RER07 100.0 8.5E-28 2.9E-32 237.0 24.5 322 84-457 19-373 (376)
134 1b9h_A AHBA synthase, protein 100.0 1.7E-27 6E-32 236.0 26.6 305 102-457 15-387 (388)
135 2bkw_A Alanine-glyoxylate amin 100.0 5.6E-28 1.9E-32 238.9 23.0 326 84-458 5-384 (385)
136 3nx3_A Acoat, acetylornithine 100.0 5.7E-28 2E-32 240.1 22.3 330 82-458 35-395 (395)
137 2po3_A 4-dehydrase; external a 100.0 6.4E-27 2.2E-31 234.8 29.6 317 87-457 20-385 (424)
138 3gju_A Putative aminotransfera 100.0 3.1E-27 1.1E-31 239.5 26.1 349 82-458 50-456 (460)
139 2pb2_A Acetylornithine/succiny 100.0 2.4E-27 8.1E-32 237.6 24.8 327 82-458 56-418 (420)
140 2oga_A Transaminase; PLP-depen 100.0 2E-27 6.9E-32 236.5 24.1 316 83-458 30-396 (399)
141 2dkj_A Serine hydroxymethyltra 100.0 1.6E-27 5.4E-32 237.6 23.4 324 83-457 23-387 (407)
142 4ffc_A 4-aminobutyrate aminotr 100.0 8.5E-28 2.9E-32 243.1 21.1 342 82-458 63-449 (453)
143 1zod_A DGD, 2,2-dialkylglycine 100.0 1.1E-27 3.8E-32 241.0 21.7 340 83-458 43-432 (433)
144 4a6r_A Omega transaminase; tra 100.0 7.9E-27 2.7E-31 236.5 26.8 349 82-458 49-449 (459)
145 2epj_A Glutamate-1-semialdehyd 100.0 7.5E-27 2.6E-31 235.0 24.4 327 83-458 56-431 (434)
146 3tfu_A Adenosylmethionine-8-am 100.0 5.1E-27 1.8E-31 237.4 22.6 342 84-458 76-453 (457)
147 2cy8_A D-phgat, D-phenylglycin 100.0 6.6E-27 2.3E-31 236.7 23.2 330 83-458 57-435 (453)
148 3n5m_A Adenosylmethionine-8-am 100.0 5.8E-27 2E-31 237.1 22.6 338 82-458 48-452 (452)
149 4e77_A Glutamate-1-semialdehyd 100.0 5.6E-26 1.9E-30 228.3 29.2 328 82-458 52-429 (429)
150 3a9z_A Selenocysteine lyase; P 99.9 1E-26 3.5E-31 233.8 23.5 319 84-458 18-428 (432)
151 3mc6_A Sphingosine-1-phosphate 99.9 4.1E-27 1.4E-31 241.1 20.8 323 103-458 77-437 (497)
152 3a8u_X Omega-amino acid--pyruv 99.9 4.7E-26 1.6E-30 230.2 27.8 340 83-458 50-447 (449)
153 2oat_A Ornithine aminotransfer 99.9 5.5E-26 1.9E-30 228.9 28.1 328 82-458 75-439 (439)
154 3ffr_A Phosphoserine aminotran 99.9 1.4E-26 4.7E-31 226.8 23.1 317 84-455 4-361 (362)
155 3dod_A Adenosylmethionine-8-am 99.9 4.2E-27 1.5E-31 237.8 19.9 341 82-458 43-443 (448)
156 3mad_A Sphingosine-1-phosphate 99.9 5.1E-27 1.8E-31 241.3 20.5 320 104-458 114-469 (514)
157 1z7d_A Ornithine aminotransfer 99.9 1.8E-26 6.1E-31 232.1 23.9 328 82-458 64-429 (433)
158 2e7u_A Glutamate-1-semialdehyd 99.9 2.6E-26 9E-31 230.3 24.4 323 83-455 52-424 (424)
159 1mdo_A ARNB aminotransferase; 99.9 6.5E-26 2.2E-30 224.9 26.8 312 84-458 9-386 (393)
160 1qz9_A Kynureninase; kynurenin 99.9 2.8E-26 9.7E-31 229.2 24.4 321 83-457 27-401 (416)
161 3oks_A 4-aminobutyrate transam 99.9 7.6E-27 2.6E-31 236.0 19.3 341 82-457 60-450 (451)
162 3i5t_A Aminotransferase; pyrid 99.9 1.2E-25 4E-30 228.6 27.6 345 82-458 53-454 (476)
163 2c81_A Glutamine-2-deoxy-scyll 99.9 4E-25 1.4E-29 221.2 30.4 316 89-458 5-414 (418)
164 3uwc_A Nucleotide-sugar aminot 99.9 6.4E-26 2.2E-30 223.4 24.0 314 84-458 7-371 (374)
165 3hmu_A Aminotransferase, class 99.9 3E-26 1E-30 232.6 21.6 346 82-458 54-452 (472)
166 2cjg_A L-lysine-epsilon aminot 99.9 3.6E-26 1.2E-30 231.0 22.0 340 83-458 54-448 (449)
167 3dr4_A Putative perosamine syn 99.9 5.5E-26 1.9E-30 225.5 22.8 311 83-455 22-390 (391)
168 1ibj_A CBL, cystathionine beta 99.9 1.9E-26 6.4E-31 233.0 19.7 314 84-458 90-462 (464)
169 2oqx_A Tryptophanase; lyase, p 99.9 7.2E-26 2.5E-30 229.9 23.7 337 82-458 31-442 (467)
170 3n0l_A Serine hydroxymethyltra 99.9 2.9E-25 9.9E-30 221.9 27.2 324 84-457 26-388 (417)
171 3lws_A Aromatic amino acid bet 99.9 3.8E-26 1.3E-30 223.7 20.3 287 120-455 41-356 (357)
172 1wyu_B Glycine dehydrogenase s 99.9 2.2E-25 7.5E-30 226.7 26.5 329 84-457 67-440 (474)
173 2c0r_A PSAT, phosphoserine ami 99.9 2.5E-26 8.7E-31 225.4 17.4 318 84-458 4-361 (362)
174 1w23_A Phosphoserine aminotran 99.9 1E-26 3.4E-31 227.9 14.0 317 84-457 3-359 (360)
175 1gc0_A Methionine gamma-lyase; 99.9 5E-25 1.7E-29 219.2 25.6 288 87-429 25-337 (398)
176 3pj0_A LMO0305 protein; struct 99.9 3.1E-26 1.1E-30 224.4 16.5 304 102-454 27-358 (359)
177 2dgk_A GAD-beta, GADB, glutama 99.9 2.5E-25 8.5E-30 225.1 23.4 321 102-458 54-434 (452)
178 2fnu_A Aminotransferase; prote 99.9 2.8E-25 9.7E-30 218.7 23.2 305 100-458 9-372 (375)
179 1pff_A Methionine gamma-lyase; 99.9 5.5E-25 1.9E-29 213.1 23.1 183 130-355 2-192 (331)
180 3nyt_A Aminotransferase WBPE; 99.9 5.7E-25 1.9E-29 216.3 22.7 300 102-454 14-360 (367)
181 3e9k_A Kynureninase; kynurenin 99.9 5.9E-25 2E-29 223.1 23.4 297 128-457 113-460 (465)
182 1rv3_A Serine hydroxymethyltra 99.9 5.7E-25 1.9E-29 224.0 22.8 331 83-457 44-430 (483)
183 1cs1_A CGS, protein (cystathio 99.9 2.9E-24 9.7E-29 212.8 26.8 253 124-429 50-323 (386)
184 1o69_A Aminotransferase; struc 99.9 1.8E-24 6.1E-29 214.9 25.3 302 100-457 8-386 (394)
185 3frk_A QDTB; aminotransferase, 99.9 3.9E-25 1.3E-29 217.9 20.3 303 102-456 15-366 (373)
186 3cog_A Cystathionine gamma-lya 99.9 7.7E-25 2.6E-29 217.9 22.3 192 124-358 65-262 (403)
187 3acz_A Methionine gamma-lyase; 99.9 5.2E-24 1.8E-28 211.1 26.1 276 124-457 57-388 (389)
188 3ecd_A Serine hydroxymethyltra 99.9 3.2E-24 1.1E-28 214.8 24.9 323 84-458 33-397 (425)
189 2vi8_A Serine hydroxymethyltra 99.9 1.9E-24 6.3E-29 215.2 22.9 322 83-458 24-387 (405)
190 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.5E-24 5.3E-29 219.4 22.1 285 130-455 137-455 (456)
191 3ndn_A O-succinylhomoserine su 99.9 3.8E-24 1.3E-28 213.3 23.9 214 124-391 79-298 (414)
192 3h7f_A Serine hydroxymethyltra 99.9 1.5E-24 5.2E-29 219.0 21.1 322 84-457 46-413 (447)
193 3gbx_A Serine hydroxymethyltra 99.9 3.1E-24 1E-28 214.6 22.6 312 102-457 42-395 (420)
194 1qgn_A Protein (cystathionine 99.9 5.7E-23 1.9E-27 206.1 31.5 214 124-391 112-331 (445)
195 3qhx_A Cystathionine gamma-syn 99.9 1.2E-23 3.9E-28 208.8 25.8 215 124-391 64-283 (392)
196 2cb1_A O-acetyl homoserine sul 99.9 3.7E-23 1.3E-27 206.5 29.2 176 103-318 35-216 (412)
197 2qma_A Diaminobutyrate-pyruvat 99.9 1.2E-23 4E-28 215.4 25.5 360 70-459 80-497 (497)
198 1n8p_A Cystathionine gamma-lya 99.9 7.4E-24 2.5E-28 210.2 21.9 213 124-391 53-274 (393)
199 3hbx_A GAD 1, glutamate decarb 99.9 9.3E-24 3.2E-28 216.0 22.7 323 100-458 66-444 (502)
200 1js3_A DDC;, DOPA decarboxylas 99.9 1.6E-23 5.4E-28 213.8 23.1 328 103-458 87-474 (486)
201 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.7E-22 5.8E-27 203.4 29.1 184 102-318 41-232 (437)
202 3ke3_A Putative serine-pyruvat 99.9 2.6E-23 9E-28 205.3 22.6 291 129-458 38-376 (379)
203 3ju7_A Putative PLP-dependent 99.9 7.6E-23 2.6E-27 201.7 23.7 314 98-457 11-374 (377)
204 2fyf_A PSAT, phosphoserine ami 99.9 7.9E-24 2.7E-28 210.5 16.5 317 83-458 39-398 (398)
205 2okj_A Glutamate decarboxylase 99.9 6.4E-23 2.2E-27 210.2 22.9 319 108-458 111-502 (504)
206 3jzl_A Putative cystathionine 99.9 7.3E-22 2.5E-26 195.8 26.8 248 104-393 32-303 (409)
207 2yky_A Beta-transaminase; tran 99.8 1.5E-25 5.1E-30 225.3 0.0 334 82-458 99-460 (465)
208 3i16_A Aluminum resistance pro 99.9 9E-22 3.1E-26 195.9 27.0 249 104-392 46-319 (427)
209 3ri6_A O-acetylhomoserine sulf 99.9 3.9E-22 1.3E-26 199.4 24.1 159 124-318 80-242 (430)
210 3vp6_A Glutamate decarboxylase 99.9 1.3E-21 4.6E-26 200.3 27.9 326 104-458 110-505 (511)
211 3hvy_A Cystathionine beta-lyas 99.9 3E-21 1E-25 192.1 27.1 249 103-392 46-319 (427)
212 2x3l_A ORN/Lys/Arg decarboxyla 99.9 7.6E-23 2.6E-27 206.2 15.2 285 121-458 52-353 (446)
213 2fq6_A Cystathionine beta-lyas 99.9 1.2E-21 4.1E-26 195.2 23.7 214 124-391 80-300 (415)
214 1ohv_A 4-aminobutyrate aminotr 99.9 2.1E-22 7.2E-27 204.4 17.2 340 82-459 62-472 (472)
215 2a7v_A Serine hydroxymethyltra 99.9 2E-21 6.7E-26 196.5 24.1 325 84-456 55-439 (490)
216 3ht4_A Aluminum resistance pro 99.9 2.5E-21 8.5E-26 193.6 24.2 252 103-393 37-309 (431)
217 3nmy_A Xometc, cystathionine g 99.9 3.2E-21 1.1E-25 191.3 24.6 215 124-391 65-285 (400)
218 4e1o_A HDC, histidine decarbox 99.9 2E-21 6.8E-26 197.7 23.6 328 103-458 92-478 (481)
219 2jis_A Cysteine sulfinic acid 99.9 6.3E-21 2.2E-25 195.8 27.0 309 120-458 138-515 (515)
220 2ctz_A O-acetyl-L-homoserine s 99.9 6.9E-21 2.4E-25 190.5 25.9 164 120-318 50-220 (421)
221 3k40_A Aromatic-L-amino-acid d 99.9 2.2E-21 7.6E-26 197.0 22.3 327 103-458 87-471 (475)
222 1wyu_A Glycine dehydrogenase ( 99.9 4.7E-21 1.6E-25 192.8 22.9 277 128-455 110-437 (438)
223 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.2E-20 7.4E-25 185.0 26.2 300 100-451 11-389 (390)
224 1c4k_A Protein (ornithine deca 99.8 4E-20 1.4E-24 195.0 21.2 177 123-317 170-366 (730)
225 3qm2_A Phosphoserine aminotran 99.8 2.8E-20 9.6E-25 182.8 15.8 317 93-457 29-384 (386)
226 2vyc_A Biodegradative arginine 99.8 1.9E-19 6.6E-24 191.4 19.6 175 125-318 204-398 (755)
227 3e77_A Phosphoserine aminotran 99.8 4.8E-20 1.7E-24 180.1 13.5 308 98-457 20-374 (377)
228 4ao9_A Beta-phenylalanine amin 99.8 2.8E-18 9.7E-23 171.2 25.0 332 82-458 86-446 (454)
229 3m5u_A Phosphoserine aminotran 99.8 6.1E-19 2.1E-23 171.7 18.1 315 84-457 5-359 (361)
230 3n75_A LDC, lysine decarboxyla 99.7 7.1E-17 2.4E-21 168.9 16.4 173 122-318 191-380 (715)
231 4atq_A 4-aminobutyrate transam 99.7 5.5E-15 1.9E-19 148.1 20.7 339 82-458 63-455 (456)
232 4e3q_A Pyruvate transaminase; 99.6 1E-13 3.5E-18 139.4 26.3 345 82-458 66-468 (473)
233 3hl2_A O-phosphoseryl-tRNA(SEC 99.6 3.7E-14 1.3E-18 138.4 21.4 234 130-391 116-355 (501)
234 4a0g_A Adenosylmethionine-8-am 99.5 6.6E-14 2.3E-18 150.0 16.4 343 84-459 381-829 (831)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 6.6E-13 2.3E-17 131.2 21.2 186 128-329 96-288 (450)
236 3ou5_A Serine hydroxymethyltra 99.5 1.7E-12 5.9E-17 126.1 23.4 329 84-456 55-439 (490)
237 3gh5_A HEX1, beta-hexosaminida 84.7 4.8 0.00016 40.3 10.2 116 143-267 124-274 (525)
238 1jak_A Beta-N-acetylhexosamini 81.3 7.7 0.00026 38.7 10.2 67 194-267 183-249 (512)
239 1now_A Beta-hexosaminidase bet 76.1 6.5 0.00022 39.2 7.8 65 194-270 177-243 (507)
240 2gjx_A Beta-hexosaminidase alp 74.8 7.6 0.00026 38.7 8.0 63 194-267 171-233 (507)
241 4fgs_A Probable dehydrogenase 74.0 11 0.00036 34.3 8.2 101 150-258 29-134 (273)
242 3rcn_A Beta-N-acetylhexosamini 66.4 11 0.00037 37.9 7.0 75 192-266 162-241 (543)
243 3guy_A Short-chain dehydrogena 61.7 45 0.0015 28.7 9.6 95 157-257 6-102 (230)
244 3dfz_A SIRC, precorrin-2 dehyd 60.7 84 0.0029 27.3 12.3 99 147-275 29-130 (223)
245 1c7s_A Beta-N-acetylhexosamini 60.2 24 0.00081 37.5 8.4 119 143-266 262-417 (858)
246 3rwb_A TPLDH, pyridoxal 4-dehy 59.2 23 0.00079 31.1 7.2 95 157-257 11-110 (247)
247 4g81_D Putative hexonate dehyd 59.1 55 0.0019 29.1 9.6 99 151-257 10-116 (255)
248 1ofu_X SULA, hypothetical prot 56.5 67 0.0023 24.8 10.5 99 159-265 12-113 (119)
249 3tpc_A Short chain alcohol deh 52.7 33 0.0011 30.2 7.1 95 157-257 12-115 (257)
250 3rd5_A Mypaa.01249.C; ssgcid, 51.9 45 0.0015 30.0 8.1 93 157-256 21-113 (291)
251 4dqx_A Probable oxidoreductase 50.5 40 0.0014 30.2 7.5 95 157-257 32-131 (277)
252 1pjq_A CYSG, siroheme synthase 50.4 1.8E+02 0.0063 28.1 12.7 93 149-270 12-106 (457)
253 3gvc_A Oxidoreductase, probabl 48.8 39 0.0013 30.3 7.1 95 157-257 34-133 (277)
254 1tqj_A Ribulose-phosphate 3-ep 48.7 1.3E+02 0.0046 26.0 10.3 32 238-269 142-180 (230)
255 3ppi_A 3-hydroxyacyl-COA dehyd 48.6 77 0.0026 28.1 9.1 95 157-257 35-139 (281)
256 3h7a_A Short chain dehydrogena 47.6 81 0.0028 27.6 8.9 94 157-257 12-113 (252)
257 4fn4_A Short chain dehydrogena 47.3 64 0.0022 28.6 8.1 99 151-257 8-115 (254)
258 3m1a_A Putative dehydrogenase; 46.9 50 0.0017 29.4 7.5 95 157-257 10-109 (281)
259 3grp_A 3-oxoacyl-(acyl carrier 46.8 42 0.0014 29.8 6.9 95 157-257 32-131 (266)
260 4eso_A Putative oxidoreductase 45.8 46 0.0016 29.3 7.0 95 157-257 13-112 (255)
261 4e6p_A Probable sorbitol dehyd 43.3 70 0.0024 28.1 7.8 95 157-257 13-112 (259)
262 3tzq_B Short-chain type dehydr 42.9 78 0.0027 28.0 8.1 95 157-257 16-117 (271)
263 2yl5_A Beta-N-acetylhexosamini 42.3 19 0.00064 35.2 3.9 32 239-270 85-118 (442)
264 2ya0_A Putative alkaline amylo 42.2 13 0.00043 39.0 2.9 28 248-275 254-281 (714)
265 1bqc_A Protein (beta-mannanase 42.1 62 0.0021 29.3 7.4 18 190-207 37-54 (302)
266 1i4n_A Indole-3-glycerol phosp 41.5 46 0.0016 29.6 6.1 58 203-270 101-158 (251)
267 3lyl_A 3-oxoacyl-(acyl-carrier 41.0 1.1E+02 0.0039 26.3 8.8 95 157-257 10-112 (247)
268 3pxx_A Carveol dehydrogenase; 40.6 47 0.0016 29.6 6.3 95 157-257 15-127 (287)
269 3gem_A Short chain dehydrogena 40.4 42 0.0014 29.8 5.8 97 150-257 28-128 (260)
270 2e8y_A AMYX protein, pullulana 40.4 9.6 0.00033 39.9 1.6 29 248-276 315-343 (718)
271 2ew8_A (S)-1-phenylethanol deh 40.3 1.1E+02 0.0037 26.6 8.5 94 157-257 12-112 (249)
272 4dyv_A Short-chain dehydrogena 40.3 82 0.0028 28.0 7.8 99 151-257 29-133 (272)
273 3l6e_A Oxidoreductase, short-c 40.0 47 0.0016 28.8 6.0 94 157-257 8-107 (235)
274 3n74_A 3-ketoacyl-(acyl-carrie 39.9 76 0.0026 27.7 7.5 99 150-257 10-114 (261)
275 3ovp_A Ribulose-phosphate 3-ep 39.7 1.9E+02 0.0063 25.1 11.0 93 190-301 104-198 (228)
276 2o23_A HADH2 protein; HSD17B10 39.7 1.1E+02 0.0037 26.7 8.5 94 157-257 17-122 (265)
277 4gqr_A Pancreatic alpha-amylas 39.7 20 0.00069 35.1 3.8 34 239-275 70-103 (496)
278 1f2d_A 1-aminocyclopropane-1-c 39.2 41 0.0014 31.3 5.7 17 190-206 118-134 (341)
279 3ozo_A N-acetylglucosaminidase 38.8 39 0.0013 34.1 5.7 65 194-270 213-279 (572)
280 2yl6_A Beta-N-acetylhexosamini 38.7 19 0.00064 35.1 3.3 32 239-270 82-115 (434)
281 4ibo_A Gluconate dehydrogenase 38.6 1.1E+02 0.0037 27.1 8.3 95 157-257 31-133 (271)
282 3inp_A D-ribulose-phosphate 3- 37.3 2.1E+02 0.0073 25.1 9.9 93 190-301 126-224 (246)
283 3op4_A 3-oxoacyl-[acyl-carrier 37.0 72 0.0025 27.8 6.8 95 157-257 14-113 (248)
284 3tsm_A IGPS, indole-3-glycerol 36.8 68 0.0023 28.9 6.5 51 210-269 126-176 (272)
285 2ya1_A Putative alkaline amylo 36.6 18 0.00062 39.5 3.0 28 248-275 561-588 (1014)
286 3gaf_A 7-alpha-hydroxysteroid 36.3 85 0.0029 27.5 7.2 95 157-257 17-118 (256)
287 4imr_A 3-oxoacyl-(acyl-carrier 36.1 1.9E+02 0.0066 25.5 9.7 97 157-257 38-139 (275)
288 3tfo_A Putative 3-oxoacyl-(acy 36.0 92 0.0031 27.6 7.4 95 157-257 9-111 (264)
289 1fob_A Beta-1,4-galactanase; B 35.9 2.1E+02 0.0072 26.3 10.1 75 190-274 11-85 (334)
290 3rih_A Short chain dehydrogena 35.8 1.4E+02 0.0048 26.8 8.7 95 157-257 46-149 (293)
291 4a29_A Engineered retro-aldol 35.5 48 0.0016 29.5 5.1 78 180-268 82-159 (258)
292 3ged_A Short-chain dehydrogena 35.4 1.1E+02 0.0037 27.0 7.6 94 157-257 7-105 (247)
293 4iin_A 3-ketoacyl-acyl carrier 35.3 83 0.0029 27.8 7.0 102 147-257 27-137 (271)
294 3ctl_A D-allulose-6-phosphate 35.0 2.2E+02 0.0076 24.6 10.4 49 243-301 143-197 (231)
295 1hxh_A 3BETA/17BETA-hydroxyste 34.9 1.2E+02 0.0041 26.3 7.9 94 157-257 11-110 (253)
296 3bzy_B ESCU; auto cleavage pro 34.5 23 0.00079 25.5 2.4 25 243-270 24-48 (83)
297 3ezl_A Acetoacetyl-COA reducta 34.5 1.8E+02 0.0063 25.0 9.2 100 150-257 13-121 (256)
298 3t7c_A Carveol dehydrogenase; 34.1 1.4E+02 0.0048 26.8 8.5 95 157-257 33-148 (299)
299 1uls_A Putative 3-oxoacyl-acyl 33.9 64 0.0022 28.0 5.9 92 157-257 10-107 (245)
300 4fc7_A Peroxisomal 2,4-dienoyl 33.4 1.1E+02 0.0037 27.1 7.5 95 157-257 32-135 (277)
301 3is3_A 17BETA-hydroxysteroid d 32.7 84 0.0029 27.8 6.6 95 157-257 23-126 (270)
302 3faw_A Reticulocyte binding pr 32.7 23 0.0008 37.8 3.1 28 248-275 369-396 (877)
303 3vc3_A Beta-cyanoalnine syntha 32.7 38 0.0013 31.7 4.3 53 151-206 89-141 (344)
304 1ht6_A AMY1, alpha-amylase iso 32.5 39 0.0013 32.3 4.5 29 248-276 68-96 (405)
305 3zq4_A Ribonuclease J 1, RNAse 32.4 82 0.0028 31.6 7.0 75 175-263 322-408 (555)
306 1lwj_A 4-alpha-glucanotransfer 32.4 35 0.0012 33.0 4.2 29 248-276 69-97 (441)
307 1g94_A Alpha-amylase; beta-alp 32.4 28 0.00095 33.9 3.4 29 248-276 64-92 (448)
308 3edm_A Short chain dehydrogena 31.9 2.1E+02 0.0073 24.8 9.2 95 157-257 13-117 (259)
309 3h5d_A DHDPS, dihydrodipicolin 31.6 3E+02 0.01 25.0 11.2 29 239-270 141-171 (311)
310 3rss_A Putative uncharacterize 31.4 2.9E+02 0.01 27.1 10.7 104 149-270 244-356 (502)
311 3ecs_A Translation initiation 31.2 3.1E+02 0.011 25.1 10.2 117 131-268 107-229 (315)
312 1hjs_A Beta-1,4-galactanase; 4 31.1 2.5E+02 0.0085 25.8 9.7 37 238-274 49-85 (332)
313 3sju_A Keto reductase; short-c 31.1 1.2E+02 0.004 27.0 7.2 95 157-257 29-131 (279)
314 3sc4_A Short chain dehydrogena 30.9 1.4E+02 0.0047 26.6 7.8 95 157-257 14-123 (285)
315 4egf_A L-xylulose reductase; s 30.9 1.7E+02 0.0057 25.7 8.3 98 157-257 25-128 (266)
316 3kux_A Putative oxidoreductase 30.9 1.1E+02 0.0037 28.4 7.2 71 186-269 55-125 (352)
317 3uve_A Carveol dehydrogenase ( 30.8 89 0.003 27.8 6.4 95 157-257 16-135 (286)
318 4dmm_A 3-oxoacyl-[acyl-carrier 30.6 99 0.0034 27.3 6.6 95 157-257 33-136 (269)
319 1mxg_A Alpha amylase; hyperthe 30.5 45 0.0015 32.3 4.5 29 248-276 86-114 (435)
320 1vl8_A Gluconate 5-dehydrogena 30.4 1.4E+02 0.0046 26.3 7.5 94 157-257 26-129 (267)
321 3zv4_A CIS-2,3-dihydrobiphenyl 30.4 1.2E+02 0.0039 27.1 7.1 62 157-224 10-71 (281)
322 4aie_A Glucan 1,6-alpha-glucos 30.2 39 0.0013 33.6 4.2 28 248-275 79-106 (549)
323 1hdc_A 3-alpha, 20 beta-hydrox 30.2 1.3E+02 0.0046 26.1 7.4 95 157-257 10-109 (254)
324 2guy_A Alpha-amylase A; (beta- 30.0 41 0.0014 32.9 4.2 28 248-275 97-124 (478)
325 2z1k_A (NEO)pullulanase; hydro 29.9 41 0.0014 32.9 4.2 29 248-276 96-124 (475)
326 2yxb_A Coenzyme B12-dependent 29.9 1.2E+02 0.0041 24.6 6.5 58 192-262 40-97 (161)
327 3zu3_A Putative reductase YPO4 29.9 3.7E+02 0.013 25.6 10.8 62 157-224 52-129 (405)
328 1gcy_A Glucan 1,4-alpha-maltot 29.5 45 0.0015 33.2 4.5 30 248-277 92-121 (527)
329 3imf_A Short chain dehydrogena 29.4 1.5E+02 0.0052 25.7 7.7 95 157-257 11-113 (257)
330 1wza_A Alpha-amylase A; hydrol 29.4 43 0.0015 32.9 4.2 29 248-276 81-109 (488)
331 3qlj_A Short chain dehydrogena 29.2 1.1E+02 0.0039 27.8 7.0 95 157-257 32-144 (322)
332 3s55_A Putative short-chain de 29.2 2E+02 0.0067 25.4 8.5 95 157-257 15-129 (281)
333 1i4n_A Indole-3-glycerol phosp 29.0 91 0.0031 27.6 5.9 74 176-256 149-222 (251)
334 3oid_A Enoyl-[acyl-carrier-pro 28.9 1.8E+02 0.0062 25.3 8.1 95 157-257 9-112 (258)
335 1tzj_A ACC deaminase, 1-aminoc 28.9 63 0.0022 29.9 5.2 17 190-206 115-131 (338)
336 3kvo_A Hydroxysteroid dehydrog 28.6 2E+02 0.0069 26.6 8.6 95 157-257 50-159 (346)
337 3rkr_A Short chain oxidoreduct 28.6 1.3E+02 0.0044 26.3 7.0 94 157-257 34-137 (262)
338 1oft_A SULA, hypothetical prot 28.6 2.4E+02 0.0082 23.0 11.8 94 164-265 59-155 (161)
339 1jae_A Alpha-amylase; glycosid 28.5 38 0.0013 33.1 3.7 30 248-277 74-103 (471)
340 2aaa_A Alpha-amylase; glycosid 28.5 43 0.0015 32.8 4.1 29 248-276 97-125 (484)
341 2vt1_B Surface presentation of 28.4 33 0.0011 25.3 2.4 22 249-270 27-48 (93)
342 1ua7_A Alpha-amylase; beta-alp 28.2 42 0.0014 32.3 3.8 31 247-277 73-103 (422)
343 3tsc_A Putative oxidoreductase 28.2 1.1E+02 0.0038 27.1 6.5 95 157-257 16-131 (277)
344 2dh2_A 4F2 cell-surface antige 28.1 48 0.0017 31.9 4.3 28 248-275 81-108 (424)
345 3ohs_X Trans-1,2-dihydrobenzen 28.1 1.2E+02 0.0041 27.8 7.0 72 186-270 54-125 (334)
346 1hvx_A Alpha-amylase; hydrolas 27.9 39 0.0013 33.6 3.6 28 248-275 81-108 (515)
347 1ud2_A Amylase, alpha-amylase; 27.8 42 0.0014 32.9 3.8 28 248-275 80-107 (480)
348 3f9i_A 3-oxoacyl-[acyl-carrier 27.7 2.8E+02 0.0094 23.7 9.1 78 149-236 14-91 (249)
349 3r1i_A Short-chain type dehydr 27.7 2.2E+02 0.0075 25.1 8.5 95 157-257 37-139 (276)
350 1pii_A N-(5'phosphoribosyl)ant 27.6 84 0.0029 30.6 5.8 58 203-270 108-165 (452)
351 3db2_A Putative NADPH-dependen 27.5 1.4E+02 0.0047 27.7 7.3 73 186-271 54-126 (354)
352 1ea9_C Cyclomaltodextrinase; h 27.5 66 0.0023 32.5 5.3 30 247-276 217-246 (583)
353 1x1t_A D(-)-3-hydroxybutyrate 27.4 2E+02 0.0068 25.0 8.1 95 157-257 9-113 (260)
354 3oec_A Carveol dehydrogenase ( 27.3 2E+02 0.0069 26.0 8.3 95 157-257 51-165 (317)
355 3bh4_A Alpha-amylase; calcium, 27.3 41 0.0014 33.1 3.6 28 248-275 78-105 (483)
356 1xp8_A RECA protein, recombina 27.3 3.8E+02 0.013 24.9 11.4 115 149-267 73-206 (366)
357 4gkb_A 3-oxoacyl-[acyl-carrier 27.2 2E+02 0.0069 25.3 8.0 98 151-257 8-112 (258)
358 3t7y_A YOP proteins translocat 27.2 31 0.0011 25.7 2.1 22 249-270 42-63 (97)
359 3v2h_A D-beta-hydroxybutyrate 27.1 2E+02 0.0069 25.4 8.1 95 157-257 30-134 (281)
360 3ksu_A 3-oxoacyl-acyl carrier 27.0 3.1E+02 0.011 23.8 9.5 95 157-257 16-121 (262)
361 1j0h_A Neopullulanase; beta-al 26.8 53 0.0018 33.2 4.5 29 248-276 222-250 (588)
362 1wpc_A Glucan 1,4-alpha-maltoh 26.6 45 0.0015 32.7 3.8 28 248-275 82-109 (485)
363 3v2g_A 3-oxoacyl-[acyl-carrier 26.5 1.2E+02 0.0042 26.8 6.5 95 157-257 36-139 (271)
364 2gjh_A Designed protein; oblig 26.4 78 0.0027 19.9 3.4 26 433-458 5-30 (62)
365 3osu_A 3-oxoacyl-[acyl-carrier 26.4 1.5E+02 0.005 25.6 6.9 95 157-257 9-112 (246)
366 2jah_A Clavulanic acid dehydro 26.4 1.8E+02 0.006 25.1 7.5 95 157-257 12-114 (247)
367 3ftp_A 3-oxoacyl-[acyl-carrier 26.3 1.7E+02 0.0059 25.7 7.5 95 157-257 33-135 (270)
368 4gmf_A Yersiniabactin biosynth 26.2 53 0.0018 31.1 4.1 23 248-270 105-127 (372)
369 3lf2_A Short chain oxidoreduct 26.2 2E+02 0.0068 25.1 7.9 95 157-257 13-117 (265)
370 2fp4_A Succinyl-COA ligase [GD 26.2 1.8E+02 0.006 26.5 7.5 47 216-271 85-132 (305)
371 2wan_A Pullulanase; hydrolase, 26.2 49 0.0017 35.6 4.2 30 248-277 531-560 (921)
372 4b79_A PA4098, probable short- 26.2 1.9E+02 0.0065 25.3 7.5 91 157-257 16-106 (242)
373 2rhc_B Actinorhodin polyketide 26.1 1.9E+02 0.0066 25.4 7.8 95 157-257 27-129 (277)
374 3c01_E Surface presentation of 26.1 34 0.0011 25.5 2.1 22 249-270 27-48 (98)
375 3tjr_A Short chain dehydrogena 26.0 1.4E+02 0.0049 26.8 7.0 95 157-257 36-138 (301)
376 3sx2_A Putative 3-ketoacyl-(ac 25.9 1.8E+02 0.0061 25.6 7.5 93 157-257 18-128 (278)
377 2wc7_A Alpha amylase, catalyti 25.8 43 0.0015 32.9 3.5 29 248-276 102-130 (488)
378 1geg_A Acetoin reductase; SDR 25.6 2.1E+02 0.0073 24.7 7.9 95 157-257 7-109 (256)
379 2nu8_A Succinyl-COA ligase [AD 25.5 86 0.0029 28.4 5.2 46 215-270 77-123 (288)
380 2c07_A 3-oxoacyl-(acyl-carrier 25.5 3E+02 0.01 24.2 9.1 94 157-257 49-151 (285)
381 3pgx_A Carveol dehydrogenase; 25.3 1.2E+02 0.0042 26.8 6.3 95 157-257 20-135 (280)
382 3ucx_A Short chain dehydrogena 25.3 1.5E+02 0.0051 26.0 6.8 95 157-257 16-119 (264)
383 2a4k_A 3-oxoacyl-[acyl carrier 25.3 1.5E+02 0.0051 26.0 6.8 94 157-257 11-110 (263)
384 3i23_A Oxidoreductase, GFO/IDH 25.2 1.6E+02 0.0055 27.1 7.3 71 187-270 54-124 (349)
385 3oqb_A Oxidoreductase; structu 25.1 1.8E+02 0.0062 27.1 7.8 72 186-270 71-142 (383)
386 2fcj_A Small toprim domain pro 25.1 30 0.001 26.8 1.7 27 243-270 34-60 (119)
387 1wzl_A Alpha-amylase II; pullu 25.0 64 0.0022 32.6 4.7 30 247-276 218-247 (585)
388 2q5c_A NTRC family transcripti 24.9 2.8E+02 0.0095 23.2 8.1 43 158-206 36-78 (196)
389 3moi_A Probable dehydrogenase; 24.9 1.6E+02 0.0055 27.6 7.3 11 178-188 66-76 (387)
390 3cu2_A Ribulose-5-phosphate 3- 24.8 3.3E+02 0.011 23.7 8.7 49 243-301 163-218 (237)
391 3e03_A Short chain dehydrogena 24.7 1.7E+02 0.0059 25.7 7.2 95 157-257 11-120 (274)
392 2al1_A Enolase 1, 2-phospho-D- 24.7 82 0.0028 30.5 5.2 85 174-267 286-371 (436)
393 3ijr_A Oxidoreductase, short c 24.7 2.5E+02 0.0085 25.0 8.3 95 157-257 52-156 (291)
394 1ae1_A Tropinone reductase-I; 24.6 2.7E+02 0.0091 24.4 8.5 95 157-257 26-129 (273)
395 4ew6_A D-galactose-1-dehydroge 24.6 91 0.0031 28.7 5.4 73 186-271 68-141 (330)
396 3e18_A Oxidoreductase; dehydro 24.5 1.2E+02 0.0041 28.2 6.3 73 185-270 52-124 (359)
397 3ak4_A NADH-dependent quinucli 24.5 2.1E+02 0.0072 24.8 7.7 94 157-257 17-116 (263)
398 1zja_A Trehalulose synthase; s 24.4 58 0.002 32.6 4.2 29 248-276 79-107 (557)
399 3e9m_A Oxidoreductase, GFO/IDH 24.0 1.5E+02 0.005 27.2 6.7 73 186-271 55-127 (330)
400 2yvq_A Carbamoyl-phosphate syn 23.9 2.7E+02 0.0091 21.9 10.7 83 175-268 48-131 (143)
401 3edf_A FSPCMD, cyclomaltodextr 23.8 65 0.0022 32.7 4.5 30 247-276 197-226 (601)
402 3v5n_A Oxidoreductase; structu 23.8 2E+02 0.0068 27.4 7.8 48 215-271 123-170 (417)
403 3dhu_A Alpha-amylase; structur 23.7 52 0.0018 31.8 3.6 29 247-275 82-110 (449)
404 1m53_A Isomaltulose synthase; 23.6 62 0.0021 32.6 4.2 29 248-276 92-120 (570)
405 3v8b_A Putative dehydrogenase, 23.5 2.2E+02 0.0074 25.3 7.6 95 157-257 33-136 (283)
406 1y80_A Predicted cobalamin bin 23.5 2E+02 0.0067 24.3 7.0 59 191-262 109-167 (210)
407 4hp8_A 2-deoxy-D-gluconate 3-d 23.5 2.4E+02 0.0081 24.8 7.6 99 150-258 9-110 (247)
408 2p2s_A Putative oxidoreductase 23.5 2E+02 0.0069 26.2 7.6 72 186-270 54-125 (336)
409 3l77_A Short-chain alcohol deh 23.5 1.2E+02 0.0042 25.8 5.8 94 157-257 7-110 (235)
410 2glx_A 1,5-anhydro-D-fructose 23.5 2E+02 0.0068 26.1 7.5 72 186-270 50-121 (332)
411 1vb5_A Translation initiation 23.3 4E+02 0.014 23.7 10.0 119 130-267 94-216 (276)
412 2cc0_A Acetyl-xylan esterase; 23.3 1.3E+02 0.0043 25.2 5.6 69 192-266 112-180 (195)
413 3evn_A Oxidoreductase, GFO/IDH 23.1 1.4E+02 0.0046 27.4 6.3 71 187-270 56-126 (329)
414 2yv1_A Succinyl-COA ligase [AD 23.1 1.7E+02 0.0057 26.5 6.7 45 216-270 84-129 (294)
415 1gjw_A Maltodextrin glycosyltr 23.1 36 0.0012 34.9 2.3 30 248-277 181-210 (637)
416 3tqq_A Methionyl-tRNA formyltr 23.0 2.5E+02 0.0086 25.6 7.9 91 214-318 13-108 (314)
417 3v7e_A Ribosome-associated pro 22.9 1.3E+02 0.0045 21.2 4.8 45 216-269 16-60 (82)
418 1w6u_A 2,4-dienoyl-COA reducta 22.8 2.4E+02 0.0083 24.9 7.9 94 157-257 31-134 (302)
419 3u5t_A 3-oxoacyl-[acyl-carrier 22.8 1.8E+02 0.006 25.6 6.8 95 157-257 32-135 (267)
420 4aef_A Neopullulanase (alpha-a 22.8 64 0.0022 33.1 4.2 29 247-275 284-312 (645)
421 1yht_A DSPB; beta barrel, hydr 22.7 47 0.0016 31.4 2.9 69 193-266 41-112 (367)
422 1uok_A Oligo-1,6-glucosidase; 22.6 66 0.0023 32.2 4.2 28 248-275 78-105 (558)
423 3r3s_A Oxidoreductase; structu 22.4 2.4E+02 0.0082 25.1 7.7 95 157-257 54-159 (294)
424 3tox_A Short chain dehydrogena 22.4 2.3E+02 0.008 25.0 7.6 95 157-257 13-116 (280)
425 3qp9_A Type I polyketide synth 22.3 2.3E+02 0.0079 28.0 8.1 102 147-257 248-372 (525)
426 3ai3_A NADPH-sorbose reductase 22.0 2.4E+02 0.008 24.5 7.5 95 157-257 12-115 (263)
427 3nyw_A Putative oxidoreductase 21.9 2E+02 0.0067 24.9 6.8 94 157-257 12-116 (250)
428 3i6i_A Putative leucoanthocyan 21.8 1.3E+02 0.0044 27.5 5.9 98 150-267 11-116 (346)
429 3a28_C L-2.3-butanediol dehydr 21.8 2.1E+02 0.007 24.8 7.0 94 157-257 7-111 (258)
430 2bhu_A Maltooligosyltrehalose 21.7 72 0.0025 32.4 4.3 29 248-276 192-220 (602)
431 1nff_A Putative oxidoreductase 21.7 2.4E+02 0.0082 24.5 7.5 94 157-257 12-111 (260)
432 3aj7_A Oligo-1,6-glucosidase; 21.6 71 0.0024 32.3 4.2 30 247-276 86-115 (589)
433 4had_A Probable oxidoreductase 21.4 1.4E+02 0.0047 27.5 6.0 71 187-270 75-145 (350)
434 3qtp_A Enolase 1; glycolysis, 21.2 2.6E+02 0.009 26.9 7.8 94 161-268 282-379 (441)
435 2zic_A Dextran glucosidase; TI 21.2 71 0.0024 31.9 4.1 29 248-276 78-106 (543)
436 3qiv_A Short-chain dehydrogena 21.2 1.6E+02 0.0055 25.4 6.1 95 157-257 14-119 (253)
437 1zh8_A Oxidoreductase; TM0312, 21.1 2.1E+02 0.007 26.3 7.1 72 187-271 71-142 (340)
438 2ze0_A Alpha-glucosidase; TIM 21.0 69 0.0024 32.1 4.0 29 248-276 78-106 (555)
439 3rjz_A N-type ATP pyrophosphat 21.0 4.1E+02 0.014 23.1 9.3 96 157-266 11-120 (237)
440 3bk2_A RNAse J, metal dependen 21.0 2.4E+02 0.0081 28.2 8.0 79 175-263 337-423 (562)
441 1m7x_A 1,4-alpha-glucan branch 20.9 82 0.0028 32.1 4.5 29 248-276 204-232 (617)
442 4hkt_A Inositol 2-dehydrogenas 20.8 1.9E+02 0.0066 26.3 6.8 72 187-271 52-123 (331)
443 4da9_A Short-chain dehydrogena 20.8 1.7E+02 0.0057 26.0 6.2 50 157-207 34-87 (280)
444 3m07_A Putative alpha amylase; 20.7 91 0.0031 31.7 4.8 31 247-277 201-231 (618)
445 4fb5_A Probable oxidoreductase 20.7 1.8E+02 0.0063 26.9 6.8 20 249-268 132-151 (393)
446 2uvd_A 3-oxoacyl-(acyl-carrier 20.6 2.5E+02 0.0087 24.0 7.3 94 157-257 9-112 (246)
447 3cxt_A Dehydrogenase with diff 20.5 2.7E+02 0.0093 24.7 7.6 94 157-257 39-141 (291)
448 3vgf_A Malto-oligosyltrehalose 20.4 64 0.0022 32.4 3.6 35 239-276 161-195 (558)
449 1zk4_A R-specific alcohol dehy 20.3 3.2E+02 0.011 23.2 7.9 94 157-257 11-112 (251)
450 3u3x_A Oxidoreductase; structu 20.3 1E+02 0.0035 28.8 4.8 73 186-271 76-148 (361)
451 1vli_A Spore coat polysacchari 20.3 5E+02 0.017 24.5 9.4 72 177-262 113-184 (385)
452 1yb1_A 17-beta-hydroxysteroid 20.3 2.5E+02 0.0085 24.5 7.3 66 149-224 31-100 (272)
453 3rku_A Oxidoreductase YMR226C; 20.2 2.1E+02 0.0073 25.4 6.8 94 157-257 38-146 (287)
454 3sho_A Transcriptional regulat 20.1 3.5E+02 0.012 21.8 12.5 32 228-266 87-118 (187)
No 1
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=3.8e-67 Score=522.33 Aligned_cols=400 Identities=43% Similarity=0.750 Sum_probs=354.9
Q ss_pred ccccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHH
Q 012628 54 VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNK 133 (459)
Q Consensus 54 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ 133 (459)
...+++++++..|+|+|+++.+.+++++++ +|||++|.|+|+++.|+++|.|++|.+.+++.+..+.|.|..|+++||+
T Consensus 16 ~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ 94 (420)
T 4h51_A 16 TTAERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFID 94 (420)
T ss_dssp CHHHHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHH
T ss_pred hhhHHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHH
Confidence 345688999999999999999999998775 9999999999999999999999999998887766678999999999999
Q ss_pred HHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHhhhCCCCe-eeeeeecCC
Q 012628 134 VTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPGAKVLISSPTWGNHKNIFNDARVPW-SEYRYYDPK 210 (459)
Q Consensus 134 aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~G~~v-~~v~~~~~~ 210 (459)
++++++.+... ..+++..+||.|||+|+..++.++... .|||+|++++|+|++|..+++.+|++. ..+++.+++
T Consensus 95 aia~~~~g~~~---~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~ 171 (420)
T 4h51_A 95 EAVKIIYGNTV---ELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPK 171 (420)
T ss_dssp HHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGG
T ss_pred HHHHHhcCCCc---cccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccc
Confidence 99999876542 256777888999999999886665432 499999999999999999999999984 456666667
Q ss_pred CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012628 211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA 290 (459)
Q Consensus 211 ~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~ 290 (459)
++.+|++.+.+.+...+++++++++++||||||.+++.++|++|+++|+++++++|+|++|++|.+++.+.+.+.++.+.
T Consensus 172 ~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~ 251 (420)
T 4h51_A 172 TVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFA 251 (420)
T ss_dssp GTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred ccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHH
Confidence 78999999999998877889999999999999999999999999999999999999999999999876444555666666
Q ss_pred hcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012628 291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 370 (459)
Q Consensus 291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 370 (459)
+..++++++.||||.|+++|||+||+++++...+...++...+....+..+++++..+|.++..+|+++.+..+|+++++
T Consensus 252 ~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~ 331 (420)
T 4h51_A 252 RRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELS 331 (420)
T ss_dssp HTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred hhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77789999999999999999999999887787777788888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHH
Q 012628 371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 450 (459)
Q Consensus 371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~ 450 (459)
.++++|+++|+.|.+.|+ ++|.+.+|.++.+++|||+|+|++.++++.| +++||+++|+||||++++++++|++++++
T Consensus 332 ~m~~r~~~~R~~l~~~L~-~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L-~e~~Vy~~~~gRis~Agl~~~ni~~~a~a 409 (420)
T 4h51_A 332 AMAERIRTMRRTVYDELL-RLQTPGSWEHVINQIGMFSFLGLSKAQCEYC-QNHNIFITVSGRANMAGLTHETALMLAQT 409 (420)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCSSCCTHHHHCCSSEEECCCCHHHHHHH-HHTTEECCTTCEEEGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCCCCCCeecCCCceEEecCcCHHHHHHH-HhCCEEEcCCCEEEeccCCHHHHHHHHHH
Confidence 999999999999999999 9988888999999999999999999998766 55799999999999999999999999999
Q ss_pred HHHHHhhcC
Q 012628 451 IIDSYHNVS 459 (459)
Q Consensus 451 l~~~~~~~~ 459 (459)
|.+++++++
T Consensus 410 I~~vvr~i~ 418 (420)
T 4h51_A 410 INDAVRNVN 418 (420)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 999998764
No 2
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=4.2e-63 Score=493.12 Aligned_cols=397 Identities=27% Similarity=0.523 Sum_probs=338.9
Q ss_pred cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHh-hcCCCCCCCCCcccHHHHHHH
Q 012628 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVT 135 (459)
Q Consensus 57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~Y~~~~g~~~lr~ai 135 (459)
|.|++++..++++++++.+.++++..+++|||++|.|.|+++.+++++.|.++.. ++ +....++|+|..|.++||+++
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai 81 (405)
T 3k7y_A 3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT 81 (405)
T ss_dssp CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence 4688999999999999999998887889999999998787776666899999887 54 334457999999999999999
Q ss_pred HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012628 136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (459)
Q Consensus 136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d 215 (459)
++++.+.++..++++++.+++|.|+++|++++..++..+.| |+|++++|+|.+|...++.+|++++.+|+.+++++++|
T Consensus 82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 160 (405)
T 3k7y_A 82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN 160 (405)
T ss_dssp HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence 99998877777777765233399999999999665543448 99999999999999999999999999998545678999
Q ss_pred HHHHHHHHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012628 216 FEGMIADIKAAPGGSFILLH-GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~~ii~-~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (459)
++.+++++++.+ +++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.+.+..++..+....+
T Consensus 161 ~~~l~~~l~~~~-~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 239 (405)
T 3k7y_A 161 YDLFLNDLRNIP-NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI 239 (405)
T ss_dssp HHHHHHHHHHSC-SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTC
T ss_pred HHHHHHHHHhCC-CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCC
Confidence 999999998633 3444444 45699999999999999999999999999999999999997643334455656655567
Q ss_pred eEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012628 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG 374 (459)
Q Consensus 295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 374 (459)
++++++||||+|+++|||+||+++++++++.++++.+.+....+..+++++.++|.++..+|.++++.++|.++++++++
T Consensus 240 ~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~ 319 (405)
T 3k7y_A 240 AFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQ 319 (405)
T ss_dssp CEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997667788888778777776666677788899999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhh---ccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHH
Q 012628 375 RIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAI 451 (459)
Q Consensus 375 ~~~~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l 451 (459)
+|+++|+.+.+.|++ ++|.+++|++..++||||+|++++.+++++| +++||++.|+||||+++++++++++++++|
T Consensus 320 ~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~i~~~~~~i 398 (405)
T 3k7y_A 320 RITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADKI 398 (405)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHHHHHHHHHH
Confidence 999999999999983 4566666899999999999999987888888 788999999999999988999999999999
Q ss_pred HHHHhh
Q 012628 452 IDSYHN 457 (459)
Q Consensus 452 ~~~~~~ 457 (459)
+++++.
T Consensus 399 ~~~~~~ 404 (405)
T 3k7y_A 399 CLSLSQ 404 (405)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 999874
No 3
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=3.4e-58 Score=465.79 Aligned_cols=402 Identities=42% Similarity=0.765 Sum_probs=350.8
Q ss_pred ccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHh--hcCCCCCCCCCcccHHHHH
Q 012628 56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERGENKEYLPIEGLAAFNK 133 (459)
Q Consensus 56 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~~Y~~~~g~~~lr~ 133 (459)
++.+++++..++++|+++.+.+++++++++|||++|.|+|..+.+++.+.+.+++.+.. +......|.+..|.+++|+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~ 101 (448)
T 3meb_A 22 MSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE 101 (448)
T ss_dssp CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred hhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence 46799999999999999999999988888999999999998888888899999988776 2233478999999999999
Q ss_pred HHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecC
Q 012628 134 VTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDP 209 (459)
Q Consensus 134 aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~ 209 (459)
++++++.+.....+++++|+++||+||+++++++..++..+.+||+|++++|+|.+|...++ ..|++++.+|+.++
T Consensus 102 ~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 181 (448)
T 3meb_A 102 AAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK 181 (448)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCT
T ss_pred HHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccc
Confidence 99999865443334568999999999999999976677778899999999999999999999 99999999998545
Q ss_pred C-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012628 210 K-TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (459)
Q Consensus 210 ~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~ 288 (459)
+ ++++|++.+++++++.+++++++++++||||||.+++.++|++|+++|++||+++|+||+|+++.+++.+.+.+++..
T Consensus 182 ~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 261 (448)
T 3meb_A 182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRM 261 (448)
T ss_dssp TSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred ccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHH
Confidence 5 689999999999986555788999999999999999999999999999999999999999999997642223456666
Q ss_pred HHhcCCeEEEEEcCCcCcccCCCCcceEEEEe--------CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh
Q 012628 289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVC--------SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA 360 (459)
Q Consensus 289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 360 (459)
+....++++++.||||.||++|+|+||+.+++ ++++..+.+.+.+....+..+++++.++|.++..+|.+++
T Consensus 262 ~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~ 341 (448)
T 3meb_A 262 FVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKR 341 (448)
T ss_dssp HHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred HhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChH
Confidence 66677899999999999999999999986556 5665566677777776677788899999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----CcccccCCcceeeecCCCHHHHHHHHhcccEEEcCC-CcE
Q 012628 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK-----DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD-GRI 434 (459)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-----~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g-gRi 434 (459)
+..+|.+++++++++++++++++.+.|+ ++|.++ .|.+..+++|+|+|++++.+++..+++++||++.|| |||
T Consensus 342 l~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~v~~G~gRi 420 (448)
T 3meb_A 342 LLQMFYDNVKEMSARIHRMRSLLHASLA-KRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRM 420 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEEECSGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEEEeCCCcEE
Confidence 8889989999999999999999999999 886655 478888999999999999999999988899999995 599
Q ss_pred EEccCChhhHHHHHHHHHHHHhhc
Q 012628 435 SLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 435 s~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
|+++++++++++++++|+++++++
T Consensus 421 s~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 421 SMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred EEecCCHHHHHHHHHHHHHHHHhc
Confidence 999888899999999999999865
No 4
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=6.5e-58 Score=457.23 Aligned_cols=399 Identities=50% Similarity=0.906 Sum_probs=347.5
Q ss_pred cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012628 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (459)
Q Consensus 57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia 136 (459)
|.+++++..+++++++..+.++.++++++|+|+.|.|+|..++|++.+.+.+++.+........+|.+..|.+++|++++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia 81 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHH
Confidence 57888999999999999999988888889999999998888888778899999988876433578999999999999999
Q ss_pred HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012628 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (459)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d 215 (459)
+++.+.+|..+++++|++++|+||+++++++..++.. +.+||+|++++|+|..|...++..|++++.+|+++++++++|
T Consensus 82 ~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 161 (401)
T 7aat_A 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD 161 (401)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccC
Confidence 9999888888889999777799999999998655433 368999999999999999999999999999998656678999
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012628 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (459)
++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+.+++..+....++
T Consensus 162 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T 7aat_A 162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence 99999888765557889999999999999999999999999999999999999999999875321123455555566789
Q ss_pred EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
+++++||||.||++|+|+||++++.++++..+.+...+....+..+.+++..+|.++..+++++.+.+.|.+++++.+++
T Consensus 242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T 7aat_A 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999976567777666677777766666677888889999988999988888899999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~ 455 (459)
++++++++.+.|+ +++.++.+++..+++|+|+|++++.+++..+++++||.+.+++|||++..++++|++++++|++++
T Consensus 322 ~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 322 IISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHHHHHHHHHh
Confidence 9999999999999 887555678888999999999999999999988889999999999999888888999999999876
Q ss_pred h
Q 012628 456 H 456 (459)
Q Consensus 456 ~ 456 (459)
+
T Consensus 401 ~ 401 (401)
T 7aat_A 401 K 401 (401)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=3.7e-57 Score=454.67 Aligned_cols=397 Identities=42% Similarity=0.755 Sum_probs=345.8
Q ss_pred ccccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHH
Q 012628 56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT 135 (459)
Q Consensus 56 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ai 135 (459)
++.++++...++++++++.+.++.+..+++|||+.|.|+|+++.+++++.|.+++.+.++.....+|.+..|.+++|+++
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~i 101 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASV 101 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHH
Confidence 35788999999999999999888777789999999998887777766799999999988764457899999999999999
Q ss_pred HHHHhcCCCCccccC--ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCC
Q 012628 136 AELLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG 213 (459)
Q Consensus 136 a~~l~~~~~~~~~~~--~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~ 213 (459)
++++.+..+..++++ +|++ |+||+++++++.++++.+.+||+|++++|+|.+|...++..|++++.+|+.++++++
T Consensus 102 a~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (420)
T 4f4e_A 102 QKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG 179 (420)
T ss_dssp HHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred HHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence 999988776666788 8888 999999999997767778899999999999999999999999999999985556789
Q ss_pred CCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012628 214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293 (459)
Q Consensus 214 ~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (459)
+|++.+++.++..+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+....
T Consensus 180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~ 258 (420)
T 4f4e_A 180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAAAN 258 (420)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHhcC
Confidence 99999999998654578999999999999999999999999999999999999999999999762 12345666665567
Q ss_pred CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012628 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA 373 (459)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 373 (459)
+++++++||||.||++|+|+||+++++++++.++.+...+....+..+.+++.++|.++..+|.++.+.+.|.+++++++
T Consensus 259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 338 (420)
T 4f4e_A 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR 338 (420)
T ss_dssp CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999765677777766666666655566777888999999999999888877888899999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHH
Q 012628 374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIID 453 (459)
Q Consensus 374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~ 453 (459)
++++++++.+.+.|+ +++.+.++.+..+++|+|+|++++.+++..+++++||.+.|++|||++.++++++++++++|++
T Consensus 339 ~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~~~~~~l~~ 417 (420)
T 4f4e_A 339 DRIRAMRNGLVERLK-AAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAA 417 (420)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHHHHHHHHHH
Confidence 999999999999999 8743234788889999999999998888888888899999999999998888999999999998
Q ss_pred HHh
Q 012628 454 SYH 456 (459)
Q Consensus 454 ~~~ 456 (459)
+++
T Consensus 418 ~l~ 420 (420)
T 4f4e_A 418 VLK 420 (420)
T ss_dssp HHC
T ss_pred HhC
Confidence 863
No 6
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=1.5e-55 Score=441.42 Aligned_cols=394 Identities=42% Similarity=0.775 Sum_probs=322.0
Q ss_pred cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012628 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (459)
Q Consensus 57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia 136 (459)
+.+++++..++++++++.+.++++..+++|+|+.|.|+|..+.+.+.+.+.++ .. .....|.+..|.++||++++
T Consensus 15 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~~-~~~~~y~~~~g~~~lr~~ia 89 (409)
T 4eu1_A 15 QTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----TL-GTNMDYAPVTGIASFVEEAQ 89 (409)
T ss_dssp ------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----CC-CSCCCCCCTTCCHHHHHHHH
T ss_pred hHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----Cc-cccccCCCCCCcHHHHHHHH
Confidence 57889999999999999999998888899999999987765555444444443 32 23478999999999999999
Q ss_pred HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012628 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (459)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d 215 (459)
+++.+..+..+++++|.+.+|.||+++++++..++..+ .+||+|++++|+|..|...++..|++++.+|+.+++++++|
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 169 (409)
T 4eu1_A 90 KLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLN 169 (409)
T ss_dssp HHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEEC
T ss_pred HHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCc
Confidence 99876655555578886566999999999875555444 48999999999999999999999999999998656678999
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012628 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (459)
++.+++++++.++.++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++...+..++..+.+..++
T Consensus 170 ~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 249 (409)
T 4eu1_A 170 LAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPN 249 (409)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCc
Confidence 99999999854446788888999999999999999999999999999999999999999876311123455555566678
Q ss_pred EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
+++++||||.||++|+|+||+.+++++++..+.+.+.+....+..+.+++.++|.++..+|+++.+.++|.+++++.+++
T Consensus 250 ~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 329 (409)
T 4eu1_A 250 LIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSR 329 (409)
T ss_dssp CEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999754567888777777777666556676888999999999999888888888889999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~ 455 (459)
++++++++.+.|+ ++|.|..+++..+++|+|+|++++.+++.++++++||.+.|++||+++..+++++++++++|++++
T Consensus 330 ~~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 330 IAEVRKRLVSELK-ACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHHHHHHHHHHh
Confidence 9999999999999 887666678888999999999999888999998889999999999999889999999999999876
Q ss_pred h
Q 012628 456 H 456 (459)
Q Consensus 456 ~ 456 (459)
+
T Consensus 409 ~ 409 (409)
T 4eu1_A 409 K 409 (409)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=3.7e-54 Score=429.34 Aligned_cols=393 Identities=40% Similarity=0.714 Sum_probs=337.5
Q ss_pred cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHH-HhhcCCCCCCCCCcccHHHHHHHHH
Q 012628 59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAE 137 (459)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~g~~~lr~aia~ 137 (459)
+++++..++++++.+.+.++.+..+++|||+.|.|+|+++.+++++.|.+++.+ .+.......|.+..|.+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~ 81 (397)
T 3fsl_A 2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP 81 (397)
T ss_dssp CTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHH
T ss_pred cccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHH
Confidence 567888899999999999988888899999999988877777667999999999 8865445789888999999999999
Q ss_pred HHhcCCCCccccC--ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012628 138 LLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (459)
Q Consensus 138 ~l~~~~~~~~~~~--~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d 215 (459)
++.+.++..++++ +|++ |+|++++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+.+++++++|
T Consensus 82 ~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 159 (397)
T 3fsl_A 82 LLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVR 159 (397)
T ss_dssp HHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEEC
T ss_pred HHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCc
Confidence 9987766556788 8899 99999999998766666889999999999999999999999999999998655678999
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012628 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (459)
++.+++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. ..+..++..+.+..++
T Consensus 160 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (397)
T 3fsl_A 160 FNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLP 238 (397)
T ss_dssp HHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhcCCC
Confidence 999999998654578999999999999999999999999999999999999999999998752 1234455555556789
Q ss_pred EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
+++++||||.||++|+|+||+++.+++++.++.+...+....+..+.+++.++|.++..+|.+..+..+|.+++++.+++
T Consensus 239 ~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 318 (397)
T 3fsl_A 239 ALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTR 318 (397)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975456777666666665554445566778899999999999988877788889999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~ 455 (459)
++++++++.+.|+ +++.+.++.+..+++|+|+|++++.+.+..+++++||.+.||+|||++..+++++++++++|++++
T Consensus 319 ~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 319 ILAMRQELVKVLS-TEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHHHHHH-HHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHHHHHHHhhC
Confidence 9999999999999 873221367788899999999999888888888899999999999999888899999999998763
No 8
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=3.5e-52 Score=417.35 Aligned_cols=401 Identities=41% Similarity=0.748 Sum_probs=330.0
Q ss_pred cccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHH-HhhcCCCCCCCCCcccHHHHHHH
Q 012628 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVT 135 (459)
Q Consensus 57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~g~~~lr~ai 135 (459)
|.++++...+++++..+...++.+.++++|||+.|.|+|.++.+++++.+.+++.+ .+.....+.|.+..|.+++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~i 82 (412)
T 1yaa_A 3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred chhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHH
Confidence 45778888889999998888876656789999999998887776668999999999 87643346798899999999999
Q ss_pred HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC
Q 012628 136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (459)
Q Consensus 136 a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d 215 (459)
++++.+.++..+++++|+++||+||+++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+.+++++++|
T Consensus 83 a~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d 162 (412)
T 1yaa_A 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD 162 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred HHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccC
Confidence 99997777777778999888899999999998666666789999999999999999999999999999998334468899
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-
Q 012628 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM- 294 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~- 294 (459)
++.+++++++.++.++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+....+
T Consensus 163 ~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 1yaa_A 163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242 (412)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCC
Confidence 9999999986433467777799999999999999999999999999999999999999986520001224434333445
Q ss_pred --eEEEEEcCCcCcccCCCCcceEEEEe----CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012628 295 --ELLVAQSYSKNLGLYAERIGAMNVVC----SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE 368 (459)
Q Consensus 295 --~~i~~~S~SK~~~~~G~RiG~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 368 (459)
++++++||||.||++|+|+||+++++ .+++..+.+.+.+....+..+.+++.++|.++..+|++..+.+.|.++
T Consensus 243 ~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 322 (412)
T 1yaa_A 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD 322 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHH
Confidence 79999999999998899999995225 245534445555554444556677889999999899887766667778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHH
Q 012628 369 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLA 448 (459)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~ 448 (459)
+++++++++++++++.+.|+ +++.++++++..+++|+|+|.+++.+.+..+++++||.+.+..|||++..+++++++++
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~ 401 (412)
T 1yaa_A 323 MVTMSSRITKMRHALRDHLV-KLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVA 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccCCHhHHHHHH
Confidence 99999999999999999999 87522236777889999999999887788888778999999789999877899999999
Q ss_pred HHHHHHHhhc
Q 012628 449 DAIIDSYHNV 458 (459)
Q Consensus 449 ~~l~~~~~~~ 458 (459)
++|+++++.+
T Consensus 402 ~~l~~~~~~~ 411 (412)
T 1yaa_A 402 KAIDEVVRFY 411 (412)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 9
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=3.9e-52 Score=416.89 Aligned_cols=401 Identities=45% Similarity=0.822 Sum_probs=332.6
Q ss_pred ccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCCCCCCCCcccHHHHHHHH
Q 012628 58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVTA 136 (459)
Q Consensus 58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~aia 136 (459)
.++++...+++++.++.+.++.+.++++|||+.|.|+|.++++++++.+.+++.+.+.. ...+.|.+..|.+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 84 (412)
T 1ajs_A 5 VFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCAS 84 (412)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHH
T ss_pred hhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHH
Confidence 46778888899999988888765567899999999988776666689999999988732 23468989999999999999
Q ss_pred HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHhhhCCCC-eeeeeeecCC
Q 012628 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPK 210 (459)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~-v~~v~~~~~~ 210 (459)
+++.+.++..+++++|++++|+||+++++++.+++..+.+| |+|++++|+|..|...++..|++ ++.+|+.+++
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 164 (412)
T 1ajs_A 85 RLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTE 164 (412)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETT
T ss_pred HHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCC
Confidence 99877777767789998778999999999997666667899 99999999999999999999999 9999986456
Q ss_pred CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012628 211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA 290 (459)
Q Consensus 211 ~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~ 290 (459)
++++|++.+++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.....+++..+.
T Consensus 165 ~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1ajs_A 165 KRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFV 244 (412)
T ss_dssp TTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred CCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHh
Confidence 78899999999998644467888889999999999999999999999999999999999999998642000223444443
Q ss_pred hcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012628 291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 370 (459)
Q Consensus 291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 370 (459)
...++++++.||||.||++|+|+||+++.+++++..+.+.+.+....+..+.+++.++|.++..+|++..+...|.++++
T Consensus 245 ~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 324 (412)
T 1ajs_A 245 SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVK 324 (412)
T ss_dssp HTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence 44578999999999999999999999542346776666666655544455656788888998888888765556677889
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHH
Q 012628 371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 450 (459)
Q Consensus 371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~ 450 (459)
+.+++++++++++.+.|+ +++.|.++++..+++|+|+|++++.+++..+++++||.+.|++||+++..+++++++++++
T Consensus 325 ~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~~~i~~~~~~ 403 (412)
T 1ajs_A 325 TMADRILSMRSELRARLE-ALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATS 403 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCHHHHHHHHHH
Confidence 999999999999999999 8764444677788999999999988888888888899999999999996689999999999
Q ss_pred HHHHHhhcC
Q 012628 451 IIDSYHNVS 459 (459)
Q Consensus 451 l~~~~~~~~ 459 (459)
|++++++++
T Consensus 404 l~~~l~~~~ 412 (412)
T 1ajs_A 404 IHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcC
Confidence 999998763
No 10
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=3.4e-51 Score=407.75 Aligned_cols=395 Identities=44% Similarity=0.770 Sum_probs=307.9
Q ss_pred cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012628 59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138 (459)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~ 138 (459)
++++...+++++..+...++.+.++++|||+.|.|.+.++.++.++.+.+++.+.+.....+.|.+..|.+++|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 81 (396)
T 2q7w_A 2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL 81 (396)
T ss_dssp CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred ccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHH
Confidence 45667777888887777666555568999999998776664455799999998877543346898999999999999999
Q ss_pred HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHH
Q 012628 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218 (459)
Q Consensus 139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~ 218 (459)
+.+.++..+++++|++++|+||+++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+.+++++++|++.
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 161 (396)
T 2q7w_A 82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDA 161 (396)
T ss_dssp HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred HhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHH
Confidence 87665555668888755689999999998666655679999999999999999999999999999998644678899999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012628 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (459)
Q Consensus 219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (459)
+++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....++..+....+++++
T Consensus 162 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 240 (396)
T 2q7w_A 162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELIV 240 (396)
T ss_dssp HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc-chhHHHHHHHhcCCcEEE
Confidence 9999976434578888999999999999999999999999999999999999999986410 012344444344568999
Q ss_pred EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
++||||.+|++|+|+||+++++++++.++.+.+.+....+..+.+++.++|.++..+|++..+.+.|.+++++.++++++
T Consensus 241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~ 320 (396)
T 2q7w_A 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR 320 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred EEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999953234565555566665544445565678889999999998875666667788999999999
Q ss_pred HHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHHH
Q 012628 379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~~ 455 (459)
+++++.+.|+ +++.+.++++..+++|+|+|++++.+++..+++++||.+.++.|||++..+++++++++++|++++
T Consensus 321 ~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 321 MRQLFVNTLQ-EKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHH-HTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-hcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHHHHhcC
Confidence 9999999999 876322367778899999999998888888887789999998899999768999999999998764
No 11
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=8.4e-50 Score=397.53 Aligned_cols=391 Identities=38% Similarity=0.660 Sum_probs=317.5
Q ss_pred cCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012628 59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138 (459)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~ 138 (459)
|++++..++++++++.+.++.+.++++|||+.|.|.+.++.+++++.+.+++.+.+.....+.|++..|.+++|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 81 (394)
T 2ay1_A 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL 81 (394)
T ss_dssp GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred CccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHH
Confidence 45677788999998888887666678999999998776654455799999998877543347898889999999999999
Q ss_pred HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHH
Q 012628 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218 (459)
Q Consensus 139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~ 218 (459)
+.+. .+++++|++++|+||+++++++.+++..+.+||+|++++|+|..|...++..|++++.+|+++++++++|++.
T Consensus 82 ~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 158 (394)
T 2ay1_A 82 ILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG 158 (394)
T ss_dssp HHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred HhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHH
Confidence 8543 1247888766789999999998666655569999999999999999999999999999998644678899999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012628 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (459)
Q Consensus 219 l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (459)
+++++++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. .+..++..+....+++++
T Consensus 159 l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 237 (394)
T 2ay1_A 159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVLI 237 (394)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEEE
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCCEEE
Confidence 9999986434578888899999999999999999999999999999999999999886410 012334434344568999
Q ss_pred EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
++||||.+|++|+|+||+++++++++.++.+...+....+..+.+++.++|.++..+|++.++.+.|.++++++++++++
T Consensus 238 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~ 317 (394)
T 2ay1_A 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLR 317 (394)
T ss_dssp EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999954335676666666655544445555668888888888888776666667788999999999
Q ss_pred HHHHHHHHHhhccCCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCCCcEEEccCChhhHHHHHHHHHHH
Q 012628 379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDS 454 (459)
Q Consensus 379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~e~i~~~~~~l~~~ 454 (459)
+++++.+.|+ +++.+.++.+..+++|+|+|++++.+.+.++++++||.+.+|.||+++..+++++++++++|+++
T Consensus 318 ~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 318 LREQLAGELR-DLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHH-HHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHHHHHc
Confidence 9999999999 77522236777788899999999877788888778999999899999866899999999999875
No 12
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=4.9e-48 Score=387.97 Aligned_cols=381 Identities=23% Similarity=0.312 Sum_probs=302.6
Q ss_pred CCCCCCCCccchhHHHhhhCC----CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012628 61 GVTMAPPDPILGVSEAFKADT----DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (459)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~----~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia 136 (459)
+....++++++.+.+.++++. +.++|+|+.|.|.|.+..+++++.+.+++.+..... ...|.+..|.+++|++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia 90 (418)
T 3rq1_A 12 AKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAPIAGIPDFLCAAE 90 (418)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCCTTCCHHHHHHHH
T ss_pred cCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCCCCChHHHHHHHH
Confidence 334456777877776664332 348999999999887766667899999887755432 267999999999999999
Q ss_pred HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012628 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF 216 (459)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~ 216 (459)
+++.+.++.. .+++|++ |+||++++.++. ...+.+||+|++++|+|..|...++..|++++.+|++++ ++++|+
T Consensus 91 ~~~~~~~~~~-~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~ 164 (418)
T 3rq1_A 91 KECFGNFRPE-GHIRSIA--TAGGTGGIHHLI--HNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDE-HNNFNH 164 (418)
T ss_dssp HHHHGGGCCS-SEEEEEE--ESHHHHHHHHHH--HHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCT-TSSBCH
T ss_pred HHHhcccCcc-ccccEEE--CCchHHHHHHHH--HHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCC-CCCcCH
Confidence 9987665432 1338988 999999999984 444779999999999999999999999999999998633 478999
Q ss_pred HHHHHHHHcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012628 217 EGMIADIKAA--PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQ------EKNHIPFFDVAYQGFASGSLDNDASSVR 287 (459)
Q Consensus 217 e~l~~~i~~~--~~~~~~ii~~~p-~NPTG~~~s~~~l~~i~~l~~------~~~~~ii~Deay~~~~~~~~~~~~~~~~ 287 (459)
+.+++++++. ++.++++++++| |||||.+++.+++++|+++|+ +||+++|+||+|.++.+.+ ....
T Consensus 165 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~-----~~~~ 239 (418)
T 3rq1_A 165 EAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK-----DEVR 239 (418)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH-----HHHH
T ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh-----HHHH
Confidence 9999998741 113447888999 999999999999999999999 8999999999999998642 1111
Q ss_pred HHHh----cCCe--EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhh
Q 012628 288 LFAT----RGME--LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL 361 (459)
Q Consensus 288 ~~~~----~~~~--~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 361 (459)
.+.. ..++ +++++||||.||++|+|+||++++++++++++.+........+..+.+++.++|.++..+|++.++
T Consensus 240 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 319 (418)
T 3rq1_A 240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAK 319 (418)
T ss_dssp GGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHH
Confidence 2222 1233 589999999999999999999654568887766665443333334557888999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-CHHHHHHHHhcccEEEcCCC---cEEEc
Q 012628 362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG---RISLA 437 (459)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg---Ris~~ 437 (459)
.+.|.+++++++++++++++++.+.|+ ++| +++..+++|+|+|+++ +.+.+.++++++||.+.||+ |||++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~iRis~~ 394 (418)
T 3rq1_A 320 FKEYEAERNCYYQLIRDRADIFKQEAA-QVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAAC 394 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSSEEEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCCCeEEEEe
Confidence 777888888999999999999999999 887 5788899999999865 34333345566799999986 99998
Q ss_pred cCChhhHHHHHHHHHHHHhhc
Q 012628 438 GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 ~~~~e~i~~~~~~l~~~~~~~ 458 (459)
..+++++++++++|+++++++
T Consensus 395 ~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 395 GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp GSCHHHHTTHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 669999999999999999875
No 13
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=1.1e-47 Score=386.60 Aligned_cols=375 Identities=13% Similarity=0.133 Sum_probs=286.9
Q ss_pred cCCCCCCCCCccchhHHHhhhCCCC--CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012628 59 FEGVTMAPPDPILGVSEAFKADTDE--KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (459)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia 136 (459)
++.+...++++|+++.+.++.+.++ ++|+|+.|.| +..+..++++.+.+++.+.+.......|.+..|.+++|++++
T Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la 106 (427)
T 3dyd_A 28 PSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIA 106 (427)
T ss_dssp CCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHH
T ss_pred hhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHH
Confidence 5566777888999998888766543 5699999997 433334458999999999887654578999999999999999
Q ss_pred HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012628 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF 216 (459)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~ 216 (459)
+++.+. +..+++++|++ |+||+++++++.+. .+.+||+|++++|+|.+|...++..|++++.+|+++++++.+|+
T Consensus 107 ~~~~~~-~~~~~~~~v~~--t~g~t~al~~~~~~--l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 181 (427)
T 3dyd_A 107 SYYHCP-EAPLEAKDVIL--TSGCSQAIDLCLAV--LANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDL 181 (427)
T ss_dssp HHHCBT-TBCCCGGGEEE--ESSHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred HHHhhc-CCCCChHHEEE--ecCcHHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence 998766 77777899999 99999999998444 36799999999999999999999999999999997667789999
Q ss_pred HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012628 217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296 (459)
Q Consensus 217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (459)
+.+++++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. ...++.. .....++
T Consensus 182 ~~l~~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~-~~~~~~v 255 (427)
T 3dyd_A 182 KQLEYLIDE---KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLAT-LSTDVPI 255 (427)
T ss_dssp HHHHSSCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGG-GCSSCCE
T ss_pred HHHHHHhcc---CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHH-hCCCCcE
Confidence 999998875 678888999999999999999999999999999999999999999987542 1112222 2334578
Q ss_pred EEEEcCCcCcccCCCCcceEEEEeCCh--hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012628 297 LVAQSYSKNLGLYAERIGAMNVVCSSS--DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG 374 (459)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 374 (459)
++++||||.|+++|+|+||+++ .++ ...+.+.+.+....+. +.+++.++|.++..+|++.. .+.+++.++
T Consensus 256 i~~~S~sK~~~~~G~riG~~~~--~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~-----~~~~~~~~~ 327 (427)
T 3dyd_A 256 LSCGGLAKRWLVPGWRLGWILI--HDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTP-----GEFYHNTLS 327 (427)
T ss_dssp EEEEESTTTSSCGGGCCEEEEE--ECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC-----HHHHHHHHH
T ss_pred EEEeeccccCCCcCcceEEEEe--cCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC-----HHHHHHHHH
Confidence 9999999999999999999965 331 1111244444433322 34788889988888876321 233678889
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC----------HHHHHHHHhcccEEEcCCC--------cEEE
Q 012628 375 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG--------RISL 436 (459)
Q Consensus 375 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg--------Ris~ 436 (459)
+++++++++.+.|+ +++ ++.+..+++|+|+|++++ .+++++|++++||.+.||+ ||++
T Consensus 328 ~~~~~~~~l~~~L~-~~~---g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~ 403 (427)
T 3dyd_A 328 FLKSNADLCYGALA-AIP---GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI 403 (427)
T ss_dssp HHHHHHHHHHHHHH-HST---TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES
T ss_pred HHHHHHHHHHHHHh-cCC---CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE
Confidence 99999999999999 872 267778899999987543 4667888877899999873 9999
Q ss_pred ccCChhhHHHHHHHHHHHHhhc
Q 012628 437 AGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 437 ~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+. +++++++++++|.++++++
T Consensus 404 ~~-~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 404 TV-PEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHh
Confidence 85 9999999999999999865
No 14
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=8.5e-48 Score=382.05 Aligned_cols=359 Identities=17% Similarity=0.159 Sum_probs=285.0
Q ss_pred CCCCCccchhHHHhhhC--CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhc
Q 012628 64 MAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG 141 (459)
Q Consensus 64 ~~~~~~i~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~ 141 (459)
..+++++.++...++.. .++++|+|+.|.| ..++ ++.+.+++.+.+.... ..|++..|.+++|+++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~~~~ 83 (385)
T 1b5p_A 10 AMKPSATVAVNAKALELRRQGVDLVALTAGEP----DFDT-PEHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRR 83 (385)
T ss_dssp HCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHhcCCCEEEecCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence 34556666555544321 2467999999987 3333 6889999888876543 6798888999999999999988
Q ss_pred CCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012628 142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 142 ~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
.+|..+++++|++ |+|++++++++. ...+.+||+|++++|+|..|...++..|++++.+|+++++++.+|++++++
T Consensus 84 ~~g~~~~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (385)
T 1b5p_A 84 ENGLSVTPEETIV--TVGGSQALFNLF--QAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR 159 (385)
T ss_dssp TTCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHT
T ss_pred HhCCCCChHHEEE--cCChHHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHH
Confidence 8888788999999 999999999984 334779999999999999999999999999999999644578899999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012628 222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (459)
++++ +++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ . ..++..+ .. +++++++|
T Consensus 160 ~l~~---~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~-~~-~~~i~~~s 231 (385)
T 1b5p_A 160 AITP---RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRV-AP-EHTLTVNG 231 (385)
T ss_dssp TCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGT-CT-TTEEEEEE
T ss_pred hcCC---CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHc-CC-CCEEEEEe
Confidence 8865 67888889999999999999999999999999999999999999988753 1 1122222 22 67999999
Q ss_pred CCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012628 302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ 381 (459)
Q Consensus 302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (459)
|||.||++|+|+||+++ +++.++.+.. .....+.+++.++|.++..+|++.... .+++++.+++++++++
T Consensus 232 ~SK~~~~~G~RiG~~~~---~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~~ 301 (385)
T 1b5p_A 232 AAKAFAMTGWRIGYACG---PKEVIKAMAS----VSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAREAYRRRRD 301 (385)
T ss_dssp STTTTTCGGGCCEEEEC---CHHHHHHHHH----HHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHH
T ss_pred chhhcCCcccceEEEEe---CHHHHHHHHH----HHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHH
Confidence 99999999999999965 7775544433 333334577888998888888652111 2347889999999999
Q ss_pred HHHHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHH
Q 012628 382 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYL 447 (459)
Q Consensus 382 ~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~ 447 (459)
++.+.|+ ++| +.+..+++++|+|+.+ +. ++.+.|+ ++||.+.|| + |||++. ++++++++
T Consensus 302 ~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~-~~~~i~~~ 374 (385)
T 1b5p_A 302 LLLEGLT-ALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYAT-SEENLRKA 374 (385)
T ss_dssp HHHHHHH-HHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHH-HCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecC-CHHHHHHH
Confidence 9999999 776 5778889999988654 34 4566776 579999987 2 999985 89999999
Q ss_pred HHHHHHHHhh
Q 012628 448 ADAIIDSYHN 457 (459)
Q Consensus 448 ~~~l~~~~~~ 457 (459)
+++|.+++++
T Consensus 375 l~~l~~~l~~ 384 (385)
T 1b5p_A 375 LERFARVLGR 384 (385)
T ss_dssp HHHGGGGC--
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 15
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=2.8e-47 Score=381.82 Aligned_cols=381 Identities=18% Similarity=0.252 Sum_probs=295.8
Q ss_pred cCCCCCCCCCccchhHHHhhhCC----CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHH
Q 012628 59 FEGVTMAPPDPILGVSEAFKADT----DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKV 134 (459)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~----~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~a 134 (459)
..+.....+++++++.+.++... ++++|+|+.|.|.+..+..++++.+.+++.+..... ...|.+..|.+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ 87 (413)
T 3t18_A 9 KRATWNNGPDLAFDINNKANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH-IASYAPIEGEKDYRKI 87 (413)
T ss_dssp TTTCCCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH-HHSCCCTTCCHHHHHH
T ss_pred hhcccCCCCChHHHHHHHHhhhhhhccccceEeccccCccCCCCCcCChHHHHHHHHhcCccc-ccCcCCCCCCHHHHHH
Confidence 45566667888888887664322 347999999999887666666899999887754322 2679888999999999
Q ss_pred HHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCC
Q 012628 135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214 (459)
Q Consensus 135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~ 214 (459)
+++++.+..+.. ++++|++ |+||+++++++. ...+.+||+|++++|+|..|...++..|++++.+|+.++ ++++
T Consensus 88 la~~~~~~~~~~-~~~~i~~--t~g~~~al~~~~--~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~ 161 (413)
T 3t18_A 88 VIDTLFGPYKPE-GYISAIA--TPGGTGAIRSAI--FSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTD-DFAF 161 (413)
T ss_dssp HHHHHHGGGCCS-SEEEEEE--ESHHHHHHHHHH--HHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCT-TSSB
T ss_pred HHHHHhcccCcc-ccCcEEE--cCccHHHHHHHH--HHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCC-CCCc
Confidence 999986654432 3458999 999999999984 444779999999999999999999999999999998533 4899
Q ss_pred CHHHHHHHHHcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCCeeEEeccCCCCCCCCCCCChhH
Q 012628 215 DFEGMIADIKAA--PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQ------EKNHIPFFDVAYQGFASGSLDNDASS 285 (459)
Q Consensus 215 d~e~l~~~i~~~--~~~~~~ii~~~p-~NPTG~~~s~~~l~~i~~l~~------~~~~~ii~Deay~~~~~~~~~~~~~~ 285 (459)
|++.+++++++. ++...++++++| |||||.+++.+++++|+++|+ +||+++|+||+|.++.+.+. ...+
T Consensus 162 d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~--~~~~ 239 (413)
T 3t18_A 162 NIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGD--QQRK 239 (413)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSS--TTTG
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChh--hHHH
Confidence 999999998741 013337888999 999999999999999999999 89999999999999987642 1112
Q ss_pred HHHHHh-cCCe--EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhH
Q 012628 286 VRLFAT-RGME--LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF 362 (459)
Q Consensus 286 ~~~~~~-~~~~--~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 362 (459)
+..... ..++ +++++||||.||++|+|+||+++.+++++.++.+...........+.+++.++|.++..+|++.++.
T Consensus 240 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 319 (413)
T 3t18_A 240 FFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKK 319 (413)
T ss_dssp GGGGGTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHH
T ss_pred HHHHHhhcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHH
Confidence 111111 1233 5899999999999999999996544578866666554333223334568888999888888877654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-CH-HHHHHHHhcccEEEcCCC---cEEEc
Q 012628 363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG---RISLA 437 (459)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg---Ris~~ 437 (459)
+ |.+++++++++++++++++.+.|+ ++| +++..+++++|+|+++ +. ++.+.| +++||.+.||+ |||++
T Consensus 320 ~-~~~~~~~~~~~~~~~~~~l~~~l~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~v~~g~~~iRis~~ 392 (413)
T 3t18_A 320 I-YEQELVDLRNMLKSRADVFVTAAK-ENK----LTMIPYFGGFFTFIPTDKAFDIVKDL-EKENIFTIPSAKGIRVAIC 392 (413)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHH-HTT----CCCBCCCSSSCEEEECSCHHHHHHHH-HHTTEECEECSSEEEECTT
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHH-HcC----CCccCCCceEEEEeCCCCHHHHHHHH-HhCCEEEecCCCceEEEEe
Confidence 4 677788999999999999999999 887 6788899999999865 44 445554 56799999986 99998
Q ss_pred cCChhhHHHHHHHHHHHHhhc
Q 012628 438 GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 ~~~~e~i~~~~~~l~~~~~~~ 458 (459)
..+++++ +++|.++++++
T Consensus 393 ~~~~~~~---l~~l~~~l~~~ 410 (413)
T 3t18_A 393 GVGEEKI---PKLVQRLAFYT 410 (413)
T ss_dssp TSCGGGH---HHHHHHHHHHH
T ss_pred eCCHHHH---HHHHHHHHHHH
Confidence 7677776 88888877654
No 16
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.6e-46 Score=377.36 Aligned_cols=371 Identities=15% Similarity=0.098 Sum_probs=294.4
Q ss_pred ccCCCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHH
Q 012628 58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTA 136 (459)
Q Consensus 58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia 136 (459)
.++++...+++.+.++.+... ++++|+|+.|.| ..++ ++.+.+++.+.+.... ...|++..|.+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 77 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP----DFPP-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILA 77 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC----SSCC-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC----CCCC-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHH
Confidence 455566667777777766554 358999999997 4443 8999999999886532 368988889999999999
Q ss_pred HHHhcCCCCcccc-CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-------
Q 012628 137 ELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD------- 208 (459)
Q Consensus 137 ~~l~~~~~~~~~~-~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~------- 208 (459)
+++...+|..+++ ++|++ |+|++++++++.+ ..+.+||+|+++.|+|..|...++..|++++.+|++.
T Consensus 78 ~~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~~~--~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~ 153 (422)
T 3fvs_A 78 SFFGELLGQEIDPLRNVLV--TVGGYGALFTAFQ--ALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE 153 (422)
T ss_dssp HHHHHHHTCCCCHHHHEEE--ESHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSS
T ss_pred HHHHHhhCCCCCCCCcEEE--ECChHHHHHHHHH--HHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccc
Confidence 9998777777778 69999 9999999999843 3367999999999999999999999999999999864
Q ss_pred ---CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012628 209 ---PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285 (459)
Q Consensus 209 ---~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~ 285 (459)
+.++.+|++.+++++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...+
T Consensus 154 ~~~~~~~~~d~~~l~~~~~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~ 228 (422)
T 3fvs_A 154 LGSSSNWQLDPMELAGKFTS---RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHIS 228 (422)
T ss_dssp CCBGGGSBCCHHHHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCC
T ss_pred cccccCCCCCHHHHHhhcCC---CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCC
Confidence 13567899999998875 788888999999999999999999999999999999999999999887642 1222
Q ss_pred HHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhH-HH
Q 012628 286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF-DE 364 (459)
Q Consensus 286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~ 364 (459)
+..+....++++++.||||.||++|+|+||+++ +++.++.+. ........+++.++|.++...|.+.... ..
T Consensus 229 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (422)
T 3fvs_A 229 IASLPGMWERTLTIGSAGKTFSATGWKVGWVLG---PDHIMKHLR----TVHQNSVFHCPTQSQAAVAESFEREQLLFRQ 301 (422)
T ss_dssp GGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEEC---CHHHHHHHH----HHHHTTTCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred hhhcccccCcEEEEecchhccCCccceEEEEEe---CHHHHHHHH----HHHhhccCCCCcHHHHHHHHHHhhccccccc
Confidence 222222336889999999999999999999865 777554443 3333334467788888887776531000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCCH------------------HHHHHHHhcccE
Q 012628 365 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK------------------AQSDNMTNKWHV 426 (459)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~~------------------~~~~~ll~~~gI 426 (459)
+.+++++.+++++++++++.+.|+ ++| +.+..+++|+|+|+++.. +++..+++++||
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv 376 (422)
T 3fvs_A 302 PSSYFVQFPQAMQRCRDHMIRSLQ-SVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGL 376 (422)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCE
Confidence 124467889999999999999999 886 677888999999986532 567788887899
Q ss_pred EEcCC-------------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 427 YMTKD-------------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 427 ~v~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+.|| + |||++. +++++++++++|+++++++
T Consensus 377 ~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 377 VAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVEL 422 (422)
T ss_dssp ECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHCC
T ss_pred EEeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhhC
Confidence 99874 2 999998 9999999999999998764
No 17
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-45 Score=370.94 Aligned_cols=359 Identities=16% Similarity=0.132 Sum_probs=282.2
Q ss_pred CCCCccchhHHHhhh------CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHH
Q 012628 65 APPDPILGVSEAFKA------DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138 (459)
Q Consensus 65 ~~~~~i~~~~~~~~~------~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~ 138 (459)
.+++.+..+.+.+.+ ..++++|||+.|.| ..++ ++.+.+++.+.++.....+|++..|.+++|++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 107 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFF----SYSP-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKL 107 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSC----SSCC-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHH
Confidence 455556555544421 13568999999987 3333 789999999888642236898888999999999999
Q ss_pred HhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC--------
Q 012628 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-------- 210 (459)
Q Consensus 139 l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-------- 210 (459)
+...+|..+++++|++ |+|++++++++. ...+.+||+|++++|+|..|...++..|++++.+|+++++
T Consensus 108 l~~~~g~~~~~~~v~~--t~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 183 (447)
T 3b46_A 108 YSPIYNTELKAENVTV--TTGANEGILSCL--MGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR 183 (447)
T ss_dssp HTTTTTSCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBC
T ss_pred HHHhcCCCCChhhEEE--eCCHHHHHHHHH--HHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCcccccccccc
Confidence 9887787778889999 999999999984 3347799999999999999999999999999999986432
Q ss_pred --CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012628 211 --TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (459)
Q Consensus 211 --~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~ 288 (459)
++.+|++.|++++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..
T Consensus 184 ~~~~~~d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~ 257 (447)
T 3b46_A 184 GEEWTIDFEQFEKAITS---KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---FTRIAT 257 (447)
T ss_dssp STTSEECHHHHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCGGG
T ss_pred ccCcccCHHHHHHhhcc---CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---CcCHHH
Confidence 578999999998864 778888899999999999999999999999999999999999999887541 112211
Q ss_pred H-HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH
Q 012628 289 F-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 367 (459)
Q Consensus 289 ~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 367 (459)
+ .+..++++++.|+||.|+++|||+||+ ++.++++++.+... ......+++.++|.++..+|++... .+
T Consensus 258 ~~~~~~~~~i~i~S~sK~~~~~G~riG~~--~~~~~~l~~~l~~~----~~~~~~~~~~~~~~a~~~aL~~~~~----~~ 327 (447)
T 3b46_A 258 LSPEIGQLTLTVGSAGKSFAATGWRIGWV--LSLNAELLSYAAKA----HTRICFASPSPLQEACANSINDALK----IG 327 (447)
T ss_dssp SCHHHHTTEEEEEEHHHHTTCTTSCCEEE--ECSCHHHHHHHHHH----HHHHTSSCCHHHHHHHHHHHHHHHH----HT
T ss_pred cCCCCCCcEEEEecCchhcCCcchhhEEE--EeCCHHHHHHHHHH----HhhccCCCChHHHHHHHHHHhCCcc----hH
Confidence 1 122357999999999999999999998 44367755544432 2222336678888888777754311 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC------------------H--HHHHHHHhcccEE
Q 012628 368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------------K--AQSDNMTNKWHVY 427 (459)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~------------------~--~~~~~ll~~~gI~ 427 (459)
++++++++++++++++.+.|+ ++| +++..+++|+|+|+.+. . +++++|++++||.
T Consensus 328 ~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~ 402 (447)
T 3b46_A 328 YFEKMRQEYINKFKIFTSIFD-ELG----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVV 402 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHT----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HCC----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEE
Confidence 467899999999999999999 887 57778899999987542 1 4566787778999
Q ss_pred EcCC-------------C--cEEEccCChhhHHHHHHHHHHH
Q 012628 428 MTKD-------------G--RISLAGLSLAKCEYLADAIIDS 454 (459)
Q Consensus 428 v~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~ 454 (459)
+.|| + |||++. +++++++++++|.++
T Consensus 403 v~pg~~f~~~~~~~~~~~~iRls~~~-~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 403 AIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLENAVERLKLL 443 (447)
T ss_dssp CBCGGGGSCGGGGGGGTTEEEEECCS-CHHHHHHHHHHGGGG
T ss_pred EECchHhCCCCccCCCCCEEEEEEeC-CHHHHHHHHHHHHHH
Confidence 9875 2 999987 899999999999873
No 18
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=4.2e-44 Score=366.97 Aligned_cols=341 Identities=13% Similarity=0.095 Sum_probs=274.0
Q ss_pred cHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-CCCC
Q 012628 103 LDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGA 178 (459)
Q Consensus 103 ~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~-~~gd 178 (459)
|+.+.+++.+.+... ....|.+..|.+++|+++++++...+|..+++++|++ |+|+++++.++.. ..+ .+||
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~--~l~~~~gd 183 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLMMQ--LLIRNEKD 183 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHHHH--HHCCSTTE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHHHH--HHcCCCCC
Confidence 555666666666541 3578999999999999999999877787788999999 9999999999843 335 6999
Q ss_pred EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012628 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIA 255 (459)
Q Consensus 179 ~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~ 255 (459)
+|++++|+|..|...++..|++++.+|++++++|++|++.|++++++. ..+++++++++||||||.+++.+++++|+
T Consensus 184 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~ 263 (500)
T 3tcm_A 184 GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIV 263 (500)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHH
Confidence 999999999999999999999999999986667899999999999751 12567788889999999999999999999
Q ss_pred HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH------hcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHH
Q 012628 256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA------TRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAAR 328 (459)
Q Consensus 256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~ 328 (459)
++|++||+++|+||+|+++.+++. ....++..+. ....++++++||||.| |++|+|+||+++...+++.++.
T Consensus 264 ~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 342 (500)
T 3tcm_A 264 KFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ 342 (500)
T ss_dssp HHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH
T ss_pred HHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH
Confidence 999999999999999999887531 1222333222 1224689999999999 8999999999664457775555
Q ss_pred HHHHHHhhccccccCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCc
Q 012628 329 VKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI 404 (459)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 404 (459)
+.... ..+.+++..+|.++..+++++ ...+.|.+++++++++++++++++.+.|+ +++ ++++..+++
T Consensus 343 l~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~---g~~~~~~~g 413 (500)
T 3tcm_A 343 IYKIA-----SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFN-KLE---GITCNEAEG 413 (500)
T ss_dssp HHHHH-----HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TST---TEECCCCCB
T ss_pred HHHHH-----hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---CcEEecCCe
Confidence 54322 234578888999998888743 34456778889999999999999999999 872 278899999
Q ss_pred ceeeecCC--CH---------------HHHHHHHhcccEEEcCC-------C----cEEEccCChhhHHHHHHHHHHHHh
Q 012628 405 GMFSFTGL--NK---------------AQSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 405 g~f~~~~l--~~---------------~~~~~ll~~~gI~v~~g-------g----Ris~~~~~~e~i~~~~~~l~~~~~ 456 (459)
|+|+|+++ .. .++.++++++||.++|| | ||+++ .+++++++++++|+++++
T Consensus 414 ~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 414 AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHH
T ss_pred EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHH
Confidence 99999543 22 12567788789999976 2 99999 499999999999999887
Q ss_pred hc
Q 012628 457 NV 458 (459)
Q Consensus 457 ~~ 458 (459)
++
T Consensus 493 ~~ 494 (500)
T 3tcm_A 493 AF 494 (500)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 19
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=1.1e-44 Score=360.08 Aligned_cols=360 Identities=18% Similarity=0.179 Sum_probs=285.8
Q ss_pred CCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCC
Q 012628 65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN 144 (459)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~ 144 (459)
.+++++..+.+.++.. +++|+|+.|.+ ..+ .++.+.+++.+.++... ..|++..|..++|+++++++...+|
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~~g 81 (389)
T 1gd9_A 10 VSASEIRKLFDIAAGM--KDVISLGIGEP----DFD-TPQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQNG 81 (389)
T ss_dssp SCCCHHHHHHHHHHTC--SSCEECCCCSC----SSC-CCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHhhh--cCeEecCCCCC----CCC-CCHHHHHHHHHHHhCCC-CCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 3566777777666543 57999999987 333 37899999998886543 6798888999999999999876656
Q ss_pred CccccCc-eEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012628 145 SVLKEQR-VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (459)
Q Consensus 145 ~~~~~~~-i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i 223 (459)
..+++++ |++ |+||+++++++. ...+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.+++++
T Consensus 82 ~~~~~~~~v~~--~~g~~~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 157 (389)
T 1gd9_A 82 IEADPKTEIMV--LLGANQAFLMGL--SAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV 157 (389)
T ss_dssp CCCCTTTSEEE--ESSTTHHHHHHH--TTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC
T ss_pred CCCCCCCeEEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhc
Confidence 6566888 999 999999999983 33356999999999999999999999999999999864346789999999998
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012628 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS 303 (459)
Q Consensus 224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 303 (459)
++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.|||
T Consensus 158 ~~---~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~s 232 (389)
T 1gd9_A 158 TD---KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGFS 232 (389)
T ss_dssp CT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEEST
T ss_pred Cc---CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEecCh
Confidence 75 677888899999999999999999999999999999999999999886531 0112212211135789999999
Q ss_pred cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012628 304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL 383 (459)
Q Consensus 304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 383 (459)
|.+|++|+|+||+++ +++.++.+. ........+++.++|.++..+|++... .+++++.+++++++++++
T Consensus 233 K~~~~~G~r~G~~~~---~~~~~~~l~----~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~l 301 (389)
T 1gd9_A 233 KTFAMTGWRLGFVAA---PSWIIERMV----KFQMYNATCPVTFIQYAAAKALKDERS----WKAVEEMRKEYDRRRKLV 301 (389)
T ss_dssp TTTTCGGGCCEEEEC---CHHHHHHHH----HHHTTTTCSCCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hhcCCcccceEEEEE---CHHHHHHHH----HHHhhhccCCCHHHHHHHHHHHhCCCc----chHHHHHHHHHHHHHHHH
Confidence 999999999999965 777444443 333333446778888888888876421 125788899999999999
Q ss_pred HHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHH
Q 012628 384 FDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYL 447 (459)
Q Consensus 384 ~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~ 447 (459)
.+.|+ ++| +++..+++|+|+|+.+ +. ++.+.|++++||.+.|| + ||+++. ++++++++
T Consensus 302 ~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~ 375 (389)
T 1gd9_A 302 WKRLN-EMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEA 375 (389)
T ss_dssp HHHHH-HTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHH
T ss_pred HHHHH-HcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHH
Confidence 99999 876 5777788899988754 33 45667775679999875 2 999998 99999999
Q ss_pred HHHHHHHHhhc
Q 012628 448 ADAIIDSYHNV 458 (459)
Q Consensus 448 ~~~l~~~~~~~ 458 (459)
+++|.+++++.
T Consensus 376 l~~l~~~~~~~ 386 (389)
T 1gd9_A 376 MDRMERVLKER 386 (389)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 20
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=2.2e-44 Score=358.18 Aligned_cols=356 Identities=18% Similarity=0.139 Sum_probs=276.5
Q ss_pred CCCCCCCCccchhHH---HhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHH
Q 012628 61 GVTMAPPDPILGVSE---AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE 137 (459)
Q Consensus 61 ~~~~~~~~~i~~~~~---~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~ 137 (459)
++...+++++.++.. .++.+ ++++|||+.|.+ ..+. +|.+.+++.+.+.... ..|++..|.+++|+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~ 79 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARRAEEA-GRRIIHMEVGQP----GTGA-PRGAVEALAKSLETDA-LGYTVALGLPALRQRIAR 79 (391)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHT-TCCCEECCCSSC----SSCS-CHHHHHHHHHHHC-----------CCHHHHHHHHH
T ss_pred hHhhcCcchHHHHHHHHHHHHhc-CCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCChHHHHHHHHH
Confidence 444445555555544 33333 468999999987 4443 7889999999886543 789888899999999999
Q ss_pred HHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHH
Q 012628 138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE 217 (459)
Q Consensus 138 ~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e 217 (459)
++...+|..+++++|++ |+|++++++++. ...+.+||+|+++.|+|..+...++..|++++.+|++++.++.+|++
T Consensus 80 ~~~~~~g~~~~~~~v~~--t~g~~~al~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 155 (391)
T 3h14_A 80 LYGEWYGVDLDPGRVVI--TPGSSGGFLLAF--TALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA 155 (391)
T ss_dssp HHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHH
T ss_pred HHHHHhCCCCCHHHEEE--ecChHHHHHHHH--HHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHH
Confidence 99877777778999999 999999999984 34467999999999999999999999999999999975556788999
Q ss_pred HHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012628 218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297 (459)
Q Consensus 218 ~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (459)
+++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++... +. ....++++
T Consensus 156 ~l~~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~---~~---~~~~~~~i 223 (391)
T 3h14_A 156 DFAGL------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV---TA---LELTDECY 223 (391)
T ss_dssp HHTTS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC---CG---GGTCSSSE
T ss_pred HHHhc------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc---Ch---hhcCCCEE
Confidence 88765 35567778999999999999999999999999999999999999988764211 11 12256889
Q ss_pred EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012628 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 377 (459)
+++||||.+|++|+|+||+++ +++..+.+... ......+++.++|.++...|... +.+++.+++++
T Consensus 224 ~~~s~sK~~g~~G~r~G~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~ 289 (391)
T 3h14_A 224 VINSFSKYFSMTGWRVGWMVV---PEDQVRVVERI----AQNMFICAPHASQVAALAALDCD-------AELQANLDVYK 289 (391)
T ss_dssp EEEESSSTTCCTTSCCEEEEC---CGGGHHHHHHH----HHHTTCCCCHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred EEEechhccCCccceeEEEEe---CHHHHHHHHHH----HhhhccCCCHHHHHHHHHHhCCh-------HHHHHHHHHHH
Confidence 999999999999999999965 77755554433 22334477888888887777732 44688899999
Q ss_pred HHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC---------C--cEEEccCC
Q 012628 378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD---------G--RISLAGLS 440 (459)
Q Consensus 378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g---------g--Ris~~~~~ 440 (459)
++++.+.+.|+ ++|. ..+..+++++|+|+.+ +. +++++|++++||.+.|| + |||++. +
T Consensus 290 ~~~~~l~~~l~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~ 364 (391)
T 3h14_A 290 ANRKLMLERLP-KAGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-A 364 (391)
T ss_dssp HHHHHHHHHHH-HHTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-C
T ss_pred HHHHHHHHHHH-HcCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-C
Confidence 99999999999 8863 2345788889988743 33 55678888779999874 1 999998 8
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 012628 441 LAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 441 ~e~i~~~~~~l~~~~~~~ 458 (459)
++++++++++|++++++.
T Consensus 365 ~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 365 TADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998763
No 21
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=1.8e-45 Score=368.04 Aligned_cols=361 Identities=13% Similarity=0.070 Sum_probs=283.5
Q ss_pred CCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcC
Q 012628 63 TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA 142 (459)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~ 142 (459)
...+++.+..+.+.. .++++|+|+.|.| .+++ ++.+.+++.+.+.......|++..|.+++|+++++++...
T Consensus 6 ~~~~~~~~~~~~~~~---~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 77 (410)
T 3e2y_A 6 EGLDSNVWVEFTKLA---ADPSVVNLGQGFP----DISP-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKI 77 (410)
T ss_dssp TTCCCCHHHHTTTTT---TSTTSEECSSCCC----CSCC-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHh---cCCCeEEecCCCC----CCCC-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHH
Confidence 334555555544332 2468999999997 4543 8999999999886543468988889999999999999877
Q ss_pred CCCcccc-CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec---------CCCC
Q 012628 143 DNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD---------PKTV 212 (459)
Q Consensus 143 ~~~~~~~-~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~---------~~~~ 212 (459)
++..+++ ++|++ |+|++++++++.. ..+.+||+|+++.|+|..|...++..|++++.+|++. +.++
T Consensus 78 ~~~~~~~~~~i~~--~~g~~~a~~~~~~--~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 153 (410)
T 3e2y_A 78 YQRQIDPNEEILV--AVGAYGSLFNSIQ--GLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDW 153 (410)
T ss_dssp HTSCCCTTTSEEE--ESHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGE
T ss_pred hCCCCCCCCCEEE--eCCcHHHHHHHHH--HhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCC
Confidence 7777778 79999 9999999999843 3467999999999999999999999999999999862 2456
Q ss_pred CCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc
Q 012628 213 GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR 292 (459)
Q Consensus 213 ~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (459)
.+|++++++++++ +++++++++||||||.+++++++++|+++|++||+++|+||+|.++.+++. ...++..+...
T Consensus 154 ~~d~~~l~~~~~~---~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~ 228 (410)
T 3e2y_A 154 TFDPRELESKFSS---KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGM 228 (410)
T ss_dssp ECCHHHHHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTC
T ss_pred cCCHHHHHhhcCC---CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCc
Confidence 7899999998864 788888899999999999999999999999999999999999999887542 12222222223
Q ss_pred CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh-hHHHHHHHHHH
Q 012628 293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFDEWKAEMEM 371 (459)
Q Consensus 293 ~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~ 371 (459)
.++++++.||||.||++|+|+||+++ +++.++.+. ........+++.++|.++...|.+.. ....|.+++++
T Consensus 229 ~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 301 (410)
T 3e2y_A 229 WERTITIGSAGKTFSVTGWKLGWSIG---PAHLIKHLQ----TVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNS 301 (410)
T ss_dssp GGGEEEEEEHHHHSSCGGGCCEEEEC---CHHHHHHHH----HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHH
T ss_pred cCeEEEEecchhhcCCCCceEEEEEE---CHHHHHHHH----HHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHH
Confidence 46889999999999999999999865 777554443 33333344678888888877765300 00011234678
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC----------------HHHHHHHHhcccEEEcCC----
Q 012628 372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------------KAQSDNMTNKWHVYMTKD---- 431 (459)
Q Consensus 372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----------------~~~~~~ll~~~gI~v~~g---- 431 (459)
.+++++++++++.+.|+ ++| +.+..+++|+|+|+++. .+++.++++++||.+.||
T Consensus 302 ~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~ 376 (410)
T 3e2y_A 302 LPKELEVKRDRMVRLLN-SVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFC 376 (410)
T ss_dssp HHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHHHH-HCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhC
Confidence 89999999999999999 886 67788999999987542 166778888889999874
Q ss_pred ---------C--cEEEccCChhhHHHHHHHHHH
Q 012628 432 ---------G--RISLAGLSLAKCEYLADAIID 453 (459)
Q Consensus 432 ---------g--Ris~~~~~~e~i~~~~~~l~~ 453 (459)
+ |||++. +++++++++++|++
T Consensus 377 ~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 377 DSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp CTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence 2 999988 99999999999875
No 22
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=2.2e-44 Score=358.61 Aligned_cols=339 Identities=14% Similarity=0.142 Sum_probs=275.1
Q ss_pred CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCc-cccC-ceEEeec
Q 012628 80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQ-RVATVQG 157 (459)
Q Consensus 80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~-~~~~-~i~~~~t 157 (459)
+.++++|+|+.|++ ..+ .++.+.+++.+.++. ...|++..|.+++|+++++++...+|.. ++++ +|++ |
T Consensus 27 ~~g~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~--t 97 (396)
T 3jtx_A 27 PEGMEAVPLHIGEP----KHP-TPKVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILP--V 97 (396)
T ss_dssp CTTCCCEECSCCSC----CSC-CCHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEE--E
T ss_pred ccCCCeEEeCCcCC----CCC-CCHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEE--c
Confidence 34578999999987 444 388999999988753 3789888999999999999998777776 6788 9999 9
Q ss_pred ccchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012628 158 LSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI 232 (459)
Q Consensus 158 ~ggt~a~~l~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ 232 (459)
+|++++++++.+ ..+.+| |+|+++.|+|..+...++..|++++.+|+ +++++.+|++.+++++++ ++++
T Consensus 98 ~g~~~al~~~~~--~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~l~~~~~~---~~~~ 171 (396)
T 3jtx_A 98 LGSREALFSFVQ--TVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRSISEEVWK---RTKL 171 (396)
T ss_dssp SSHHHHHHHHHH--HHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHHH---TEEE
T ss_pred CCcHHHHHHHHH--HHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHHHHHhhcc---CcEE
Confidence 999999999843 346786 79999999999999999999999999999 456778999999999987 7888
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH---HhcCCeEEEEEcCCcCcccC
Q 012628 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---ATRGMELLVAQSYSKNLGLY 309 (459)
Q Consensus 233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~S~SK~~~~~ 309 (459)
+++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ......... ....++++++.||||.|+++
T Consensus 172 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (396)
T 3jtx_A 172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP 250 (396)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG
T ss_pred EEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccccCcEEEEeccccccCCc
Confidence 88899999999999999999999999999999999999999887641 111111111 11357899999999999999
Q ss_pred CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012628 310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 389 (459)
Q Consensus 310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 389 (459)
|+|+||+++ +++..+.+... ......+++.++|.++...|++. +++++.+++++++++.+.+.|+
T Consensus 251 G~r~G~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~- 315 (396)
T 3jtx_A 251 GLRSGFVAG---DAELLKNFLLY----RTYHGSAMSIPVQRASIAAWDDE-------QHVIDNRRLYQEKFERVIPILQ- 315 (396)
T ss_dssp GGCCEEEEE---CHHHHHHHHHH----HHHHTCCCCHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccceEEEEe---CHHHHHHHHHH----HhhcccCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999866 88855555433 22333467888888887777653 3367889999999999999998
Q ss_pred ccCCCCCcccccCCcceeeecCCC----HHHHHHHHhcccEEEcCC--------------C--cEEEccCChhhHHHHHH
Q 012628 390 KDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------------G--RISLAGLSLAKCEYLAD 449 (459)
Q Consensus 390 ~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~~~e~i~~~~~ 449 (459)
++ +.+..+++|+|+|+.+. .+++++|++++||.+.|| + ||+++. ++++++++++
T Consensus 316 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~ 389 (396)
T 3jtx_A 316 QV-----FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAE 389 (396)
T ss_dssp TT-----SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHH
T ss_pred hc-----CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHH
Confidence 65 24567888999998664 456778878789999764 2 999988 9999999999
Q ss_pred HHHHHH
Q 012628 450 AIIDSY 455 (459)
Q Consensus 450 ~l~~~~ 455 (459)
+|++++
T Consensus 390 ~l~~~l 395 (396)
T 3jtx_A 390 DIVSLY 395 (396)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998875
No 23
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=2e-44 Score=357.98 Aligned_cols=360 Identities=16% Similarity=0.159 Sum_probs=280.9
Q ss_pred CCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC
Q 012628 66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143 (459)
Q Consensus 66 ~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~ 143 (459)
+++++.++...++. ..++++|+|+.|.| ..+ .++.+.+++.+.++... ..|++..|..++|+++++++...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~~ 84 (388)
T 1j32_A 11 SPSMTLIIDAKAKAMKAEGIDVCSFSAGEP----DFN-TPKHIVEAAKAALEQGK-TRYGPAAGEPRLREAIAQKLQRDN 84 (388)
T ss_dssp CCCSSTTTHHHHHHHHTTTCCCEECCCSSC----SSC-CCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCEEECCCCCC----CCC-CCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHhc
Confidence 34445544443321 12467999999987 333 37889999988886543 679888899999999999997766
Q ss_pred CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012628 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (459)
Q Consensus 144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i 223 (459)
|..+++++|++ |+|++++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.+++++
T Consensus 85 g~~~~~~~v~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 160 (388)
T 1j32_A 85 GLCYGADNILV--TNGGKQSIFNLMLA--MIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp CCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred CCCCChhhEEE--cCCHHHHHHHHHHH--hcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhc
Confidence 76667889999 99999999998443 367999999999999999999999999999999864446789999999998
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcC
Q 012628 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSY 302 (459)
Q Consensus 224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~ 302 (459)
++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+.. ..++++++.|+
T Consensus 161 ~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~ 235 (388)
T 1j32_A 161 TP---KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ--HLSIGAASPEAYERSVVCSGF 235 (388)
T ss_dssp CT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHHTEEEEEES
T ss_pred Cc---CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC--CCCHHHccccccCCEEEEeec
Confidence 75 6788888999999999999999999999999999999999999998875321 111111111 12468999999
Q ss_pred CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012628 303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK 382 (459)
Q Consensus 303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (459)
||.+|++|+|+||+++ +++..+.+.. .....+.+++.++|.++...|+.. .+++++.++++++++++
T Consensus 236 sK~~~~~G~r~G~~~~---~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~ 302 (388)
T 1j32_A 236 AKTYAMTGWRVGFLAG---PVPLVKAATK----IQGHSTSNVCTFAQYGAIAAYENS------QDCVQEMLAAFAERRRY 302 (388)
T ss_dssp TTTTTCTTTCCEEEEC---CHHHHHHHHH----HHHTTTCSCCHHHHHHHHHHHHSC------SHHHHHHHHHHHHHHHH
T ss_pred hhccCCcccceEEEEe---CHHHHHHHHH----HHhhcccCCCHHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHH
Confidence 9999999999999965 7775444433 333334467788888877777532 13367888999999999
Q ss_pred HHHHHhhccCCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHH
Q 012628 383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLA 448 (459)
Q Consensus 383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~ 448 (459)
+.+.|+ +++ ++++..+++++|+|+.+ +. ++.+.|++++||.+.+| + |||++. +++++++++
T Consensus 303 l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~~~~i~~~~ 377 (388)
T 1j32_A 303 MLDALN-AMP---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-DLDTIKRGM 377 (388)
T ss_dssp HHHHHH-TCT---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-CHHHHHHHH
T ss_pred HHHHHh-hCC---CCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-CHHHHHHHH
Confidence 999999 772 26777888899888744 33 45667776679999886 2 999986 899999999
Q ss_pred HHHHHHHhhc
Q 012628 449 DAIIDSYHNV 458 (459)
Q Consensus 449 ~~l~~~~~~~ 458 (459)
++|+++++++
T Consensus 378 ~~l~~~l~~~ 387 (388)
T 1j32_A 378 ERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 24
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=1.5e-44 Score=365.61 Aligned_cols=362 Identities=13% Similarity=0.161 Sum_probs=283.2
Q ss_pred CCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHh
Q 012628 63 TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLF 140 (459)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~ 140 (459)
...+++++.++.+... .+++|+|+.|.| +...+| ++.+.+++.+.++.. ...+|++..|.++||+++++++.
T Consensus 59 ~~~~~s~~~~~~~~~~---~~~~i~l~~g~p-~~~~~p--~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 132 (448)
T 3aow_A 59 LEMRASEVRELLKLVE---TSDIISLAGGLP-NPKTFP--KEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLG 132 (448)
T ss_dssp HHCCCCHHHHHHHHHH---TSSSEECCCCCC-CGGGSC--HHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHhcc---CCCcEeCCCCCC-CchhCC--HHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 3345666766665443 367999999998 332322 688888888877542 12579888999999999999986
Q ss_pred cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012628 141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~ 220 (459)
..+|.+ ++++|++ |+|++++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+++ + ++|++.|+
T Consensus 133 ~~~g~~-~~~~v~~--t~G~~~al~~~~~~--l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~--g~d~~~L~ 204 (448)
T 3aow_A 133 KRYGIS-QDNDIMI--TSGSQQALDLIGRV--FLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-E--GMKVEILE 204 (448)
T ss_dssp HHHCCC-TTSEEEE--ESSHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHH
T ss_pred HhcCcC-ChhhEEE--eCcHHHHHHHHHHH--HcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHH
Confidence 555655 6889999 99999999998444 367999999999999999999999999999999963 2 59999999
Q ss_pred HHHH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012628 221 ADIK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (459)
Q Consensus 221 ~~i~----~~~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (459)
++++ +. .+++++ ++++||||||.+++.+++++|+++|++||++||+||+|..+.+++. ...++..+ +..++
T Consensus 205 ~~l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~-~~~~~ 280 (448)
T 3aow_A 205 EKLKELKSQG-KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKAL-DNEGR 280 (448)
T ss_dssp HHHHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGG-CTTSC
T ss_pred HHHhhhhccC-CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhc-CCCCC
Confidence 9997 42 256665 6899999999999999999999999999999999999999987532 11122121 33467
Q ss_pred EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
++++.||||.++ +|+|+||+++ ++++++.+... ......+++.++|.++..+|++.. |.++++++++.
T Consensus 281 vi~~~S~SK~~~-~GlriG~v~~---~~~l~~~l~~~----~~~~~~~~~~~~q~a~~~~L~~~~----~~~~~~~~~~~ 348 (448)
T 3aow_A 281 VIYLGTFSKILA-PGFRIGWMVG---DPGIIRKMEIA----KQSTDLCTNVFGQVVAWRYVDGGY----LEKHIPEIRKF 348 (448)
T ss_dssp EEEEEESTTTTC-GGGCCEEEEE---CHHHHHHHHHH----HHHHHSSCCHHHHHHHHHHHHTTH----HHHHHHHHHHH
T ss_pred EEEEccchhhcc-ccccEEEEEe---CHHHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHhCC----HHHHHHHHHHH
Confidence 999999999999 9999999977 78855555432 222234668889998888887653 24567899999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCC----------C--cEEEcc
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLAG 438 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~ 438 (459)
++++++++.+.|+ +. +|.++++..|.+|+|+|+.+ +. +++++|+++ ||.+.|| + |||++.
T Consensus 349 ~~~~~~~l~~~L~-~~-~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~ 425 (448)
T 3aow_A 349 YKPRRDAMLEALE-EF-MPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTY 425 (448)
T ss_dssp HHHHHHHHHHHHH-HH-CCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHHHHHHHHHHH-Hh-CCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCC
Confidence 9999999999998 74 12226777888999999865 33 456777776 9999875 1 999987
Q ss_pred CChhhHHHHHHHHHHHHhh
Q 012628 439 LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 439 ~~~e~i~~~~~~l~~~~~~ 457 (459)
.+++++++++++|.+++++
T Consensus 426 ~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 426 VDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp SCTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999875
No 25
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=8.4e-45 Score=363.74 Aligned_cols=344 Identities=12% Similarity=0.120 Sum_probs=267.2
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg 160 (459)
++++|||+.|.+ ..+ .++.+.+++.+.+.......|++..|..++|+++++++...+|..+++ ++|++ |+|+
T Consensus 36 g~~~idl~~g~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~--t~g~ 108 (412)
T 2x5d_A 36 GEDIIDLSMGNP----DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIV--TIGS 108 (412)
T ss_dssp TCCCEECSSCCC----CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESCH
T ss_pred CCCEEecCCCCC----CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEE--cCCh
Confidence 467999999987 333 378999999888755323679888999999999999987655665667 69999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++++++.+. .+.+||+|+++.|+|..+...++..|++++.+|++++.++.+|++.+++++++ +++++++++|||
T Consensus 109 ~~a~~~~~~~--~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~l~~p~n 183 (412)
T 2x5d_A 109 KEGLAHLMLA--TLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP---KPRMMILGFPSN 183 (412)
T ss_dssp HHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES---CCSEEEEESSCT
T ss_pred HHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc---CceEEEECCCCC
Confidence 9999998443 36799999999999999999999999999999986433455789999998874 566777799999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
|||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+....++++++.||||.+|++|+|+||+++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 259 (412)
T 2x5d_A 184 PTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG-- 259 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE--
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCccCcEEEEecCccccCCcccceEEEEc--
Confidence 999999999999999999999999999999999886431 1112212211235789999999999999999999976
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 400 (459)
+++.++.+.... .....+++.++|.++..+|++.. +++++.+++++++++++.+.|+ ++| +.+.
T Consensus 260 -~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~ 323 (412)
T 2x5d_A 260 -NPELVSALARIK----SYHDYGTFTPLQVAAIAALEGDQ------QCVRDIARQYQQRRDVLVKGLR-EAG----WMVE 323 (412)
T ss_dssp -CHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHSCS------HHHHHHHHHHHHHHHHHHHHHH-HHT----CCCC
T ss_pred -CHHHHHHHHHHH----hhhccCCCHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHH-HCC----CEec
Confidence 888655554322 22233677888888877776531 2367888999999999999999 776 5777
Q ss_pred cCCcceeeecCC-------CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 401 LRQIGMFSFTGL-------NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 401 ~~~~g~f~~~~l-------~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+++|+|+|+.+ +. ++++.|++++||.+.|| + |||++. +++++++++++|.++++++
T Consensus 324 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 324 NPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp CCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHT
T ss_pred CCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 888899988754 23 45667777679999875 2 999998 8999999999999998764
No 26
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=1.2e-44 Score=360.85 Aligned_cols=339 Identities=17% Similarity=0.210 Sum_probs=271.6
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (459)
++++|||+.|.| ..++ ++.+.+++.+.+.... ...|++..|.+++|+++++++...+|..+++++|++ |+
T Consensus 34 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~ 106 (398)
T 3ele_A 34 KENVYDFSIGNP----SIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TM 106 (398)
T ss_dssp GGGCEECCSCCC----CSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred CCCeEEeecCCC----CCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--cc
Confidence 357999999976 4343 7899999998886531 367988999999999999999877777778999999 99
Q ss_pred cchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC
Q 012628 159 SGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (459)
Q Consensus 159 ggt~a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~ 237 (459)
|++++++++.+ ..+.+| |+|++++|+|..|...++..|++++.+|++ ++++++|++++++++++ +++++++++
T Consensus 107 g~~~al~~~~~--~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~~~~ 180 (398)
T 3ele_A 107 GAAASLSICFR--ALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERINA---HTRGVIINS 180 (398)
T ss_dssp SHHHHHHHHHH--HHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCC-TTTSSCCHHHHHHTCCT---TEEEEEECS
T ss_pred CHHHHHHHHHH--HHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhCc---CCCEEEEcC
Confidence 99999999843 346799 999999999999999999999999999995 34789999999999875 788888999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh------cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012628 238 AHNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (459)
Q Consensus 238 p~NPTG~~~s~~~l~~i~~l~~~------~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (459)
||||||.+++.+++++|+++|++ ||+++|+||+|.++.+++.. .. ......+++++++||||.+|++|+
T Consensus 181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~--~~---~~~~~~~~~i~~~s~sK~~~~~G~ 255 (398)
T 3ele_A 181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIK--VP---FVTKYYDNTLVCYSYSKSLSLPGE 255 (398)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCC--CC---CGGGTCSSEEEEEESTTTSSCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCC--cC---ChHhhcCCeEEEEehhhcCCCccc
Confidence 99999999999999999999999 99999999999999875321 11 112345689999999999999999
Q ss_pred CcceEEEEeCChhHHH--HHHHHHHhhcc-ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012628 312 RIGAMNVVCSSSDLAA--RVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 388 (459)
Q Consensus 312 RiG~~~~v~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 388 (459)
|+||+++ +++..+ .+...+..... ..+.+++.++|.++..++++.. .+++++++++++.+.|+
T Consensus 256 r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 256 RIGYVLV---PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDLLYEGLT 321 (398)
T ss_dssp CCEEEEC---CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred eeEEEEE---cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHH
Confidence 9999955 554222 13333322221 2244677788888877776542 35677889999999999
Q ss_pred hccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 389 AKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 389 ~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
++| +++..+++++|+|+.+ +.+.+.+.+.++||.+.||. |||++. +++++++++++|.+++++
T Consensus 322 -~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 322 -RIG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp -HHT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred -HcC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 886 5788889999999865 34444344456799999872 999985 999999999999999987
Q ss_pred c
Q 012628 458 V 458 (459)
Q Consensus 458 ~ 458 (459)
+
T Consensus 396 ~ 396 (398)
T 3ele_A 396 Y 396 (398)
T ss_dssp H
T ss_pred h
Confidence 5
No 27
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-43 Score=360.29 Aligned_cols=359 Identities=16% Similarity=0.170 Sum_probs=272.1
Q ss_pred CceeecccccCCCCCCcc---------------------CcHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHH
Q 012628 84 KKLNLGVGAYRTEELQPY---------------------VLDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELL 139 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~---------------------~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l 139 (459)
.+|++.+|.|... +..+ .|..+.+++.+++... ....|++..|.+++|+++++++
T Consensus 64 ~~i~~nig~p~~~-~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 142 (498)
T 3ihj_A 64 EVIRANIGDAQAM-GQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYI 142 (498)
T ss_dssp SCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHH
T ss_pred hhhhcCCcCcccc-cCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 7888999887221 2211 1444555556666431 2368999999999999999999
Q ss_pred hcCC-CCccccCceEEeecccchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCC
Q 012628 140 FGAD-NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214 (459)
Q Consensus 140 ~~~~-~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~ 214 (459)
...+ |.++++++|++ |+|+++++.++.. ..+.+|| +|+++.|+|+.|...++..|++++.++++++++|++
T Consensus 143 ~~~~gG~~~~~~~i~~--t~G~~~ai~~~~~--~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~ 218 (498)
T 3ihj_A 143 TRRDGGVPADPDNIYL--TTGASDGISTILK--ILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWAL 218 (498)
T ss_dssp HHHTTTCCCCGGGEEE--ESSHHHHHHHHHH--HHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBC
T ss_pred HHhcCCCCCCcccEEE--cCCHHHHHHHHHH--HHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCC
Confidence 8777 47788999999 9999999999844 3356765 999999999999999999999999999987678999
Q ss_pred CHHHHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-
Q 012628 215 DFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT- 291 (459)
Q Consensus 215 d~e~l~~~i~~~~~--~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~- 291 (459)
|+++|++++++... ++++++++|||||||.+++.+++++|+++|++||++||+||+|+.+.+++. ....++..+..
T Consensus 219 d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~-~~~~s~~~~~~~ 297 (498)
T 3ihj_A 219 NVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD-CRFHSFKKVLYE 297 (498)
T ss_dssp CHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHH
T ss_pred CHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCC-CCcCCHHHHHHH
Confidence 99999999986321 377888889999999999999999999999999999999999999988632 12233433322
Q ss_pred ------cCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCCh----h
Q 012628 292 ------RGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNP----A 360 (459)
Q Consensus 292 ------~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~ 360 (459)
...++++++||||.| |++|+|+||++++..++++.+.+.... . .+.+++.++|.++..+++++ .
T Consensus 298 ~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~----~-~~~~~~~~~q~a~~~~l~~~~~g~~ 372 (498)
T 3ihj_A 298 MGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL----S-VRLCPPVSGQAAMDIVVNPPVAGEE 372 (498)
T ss_dssp TCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH----H-HSCCCCHHHHHHHHHHTCCCCTTST
T ss_pred hcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH----h-ccCCCCHHHHHHHHHHhcCCccCcc
Confidence 224589999999999 899999999964446888555554432 2 34577889999888888752 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---------------CHHH--HHHHHhc
Q 012628 361 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---------------NKAQ--SDNMTNK 423 (459)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---------------~~~~--~~~ll~~ 423 (459)
....|.+++++++++++++++++.+.|+ +++ ++++..+++|+|+|+.+ +.+. +.+++++
T Consensus 373 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~---g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~ 448 (498)
T 3ihj_A 373 SFEQFSREKESVLGNLAKKAKLTEDLFN-QVP---GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEE 448 (498)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-TST---TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHH
Confidence 3445667778899999999999999999 872 27888999999999632 2322 5778887
Q ss_pred ccEEEcCC-------C----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 424 WHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 424 ~gI~v~~g-------g----Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+||.++|| | ||+++. +++++++++++|.++++++
T Consensus 449 ~gI~v~pG~~f~~~~~~~~~Ris~~~-~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 449 TGICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp HCBCCEEGGGTCCCTTCCBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcccCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHH
Confidence 89999885 2 999974 8999999999999988753
No 28
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.5e-44 Score=359.40 Aligned_cols=344 Identities=16% Similarity=0.148 Sum_probs=274.8
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccchh
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGTG 162 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt~ 162 (459)
.+|||+.|.|. ..+ .++.|.+++.+.+.......|.+..|..++++++++++...+|..+++ ++|++ |+||++
T Consensus 40 ~~id~~~g~~~---~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~--~~g~~~ 113 (407)
T 3nra_A 40 RPVDFSHGDVD---AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLII--TPGTQG 113 (407)
T ss_dssp CCEETTSCCTT---TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHHHH
T ss_pred ceeeecCcCCC---CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCcHH
Confidence 47999999871 233 378999999988865333578888999999999999987777776666 79999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec----CCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD----PKTVGLDFEGMIADIKAAPGGSFILLHGCA 238 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~----~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p 238 (459)
+++++. ...+.+||+|+++.|+|..+...++..|++++.+|++. ++++.+|++.+++++++ +++++++++|
T Consensus 114 a~~~~~--~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~p 188 (407)
T 3nra_A 114 ALFLAV--AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---GARVFLFSNP 188 (407)
T ss_dssp HHHHHH--HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT---TCCEEEEESS
T ss_pred HHHHHH--HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh---CCcEEEEcCC
Confidence 999983 33367999999999999999999999999999999832 35788999999999986 5677788999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEEcCCcCcccCCCCcceEE
Q 012628 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMN 317 (459)
Q Consensus 239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (459)
|||||.+++.+++++|+++|++||+++|+||+|..+.+++. ....+..+. ...++++++.||||.+|++|+|+||++
T Consensus 189 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 266 (407)
T 3nra_A 189 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 266 (407)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEE
T ss_pred CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEE
Confidence 99999999999999999999999999999999999887642 122222221 234578999999999999999999997
Q ss_pred EEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012628 318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW 397 (459)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 397 (459)
+ +++.++.+... ......+++.++|.++..+|++.. +.+++.+++++++++++.+.|+ +++ ++
T Consensus 267 ~---~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~-~~~---~~ 329 (407)
T 3nra_A 267 G---SRAIIARMEKL----QAIVSLRAAGYSQAVLRGWFDEAP------GWMEDRIARHQAIRDELLHVLR-GCE---GV 329 (407)
T ss_dssp E---CHHHHHHHHHH----HHHHTSSSCHHHHGGGGGTTCCCT------THHHHHHHHHHHHHHHHHHHHH-TST---TC
T ss_pred c---CHHHHHHHHHH----HhhhccCCChHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHh-cCC---Cc
Confidence 6 78855554433 223344667778877777776531 2256778888999999999999 872 26
Q ss_pred ccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 398 SFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 398 ~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+..+++++|+|+.+ +. ++.+.|++++||.+.+|. ||+++. +++++++++++|.++++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 330 FARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp BCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 777888889999855 23 556777777799998752 999998 9999999999999998865
No 29
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=2.6e-44 Score=359.27 Aligned_cols=342 Identities=16% Similarity=0.111 Sum_probs=272.4
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-CceEEeecccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg 160 (459)
+.++|||+.|.+ ..+ .++.+.+++.+.+.......|++..|.+++|+++++++...+|..+++ ++|++ |+|+
T Consensus 46 g~~~idl~~g~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~--t~G~ 118 (404)
T 2o1b_A 46 PLPLINMAVGIP----DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCI--LYGT 118 (404)
T ss_dssp SSCCEECCCCSC----SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESSH
T ss_pred CCCEEecCCcCC----CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEE--cCCc
Confidence 456899999997 333 378899999888754223578777899999999999986655666666 78999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+++ +++.+|++++++++++ +++++++++|||
T Consensus 119 ~~al~~~~~~--l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~---~~~~v~l~~p~n 192 (404)
T 2o1b_A 119 KNGLVAVPTC--VINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQIID---KTKLIYLTYPNN 192 (404)
T ss_dssp HHHHHHHHHH--HCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHHH---HEEEEEECSSCT
T ss_pred HHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhcc---CceEEEEcCCCC
Confidence 9999998443 367999999999999999999999999999999853 4667899999999975 678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
|||.+++.+++++|+++|++||+++|+||+|.++.+++...+.. .+....++++++.||||.||++|+|+||+++
T Consensus 193 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-- 267 (404)
T 2o1b_A 193 PTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSIL---ASENGKDVAIEIYSLSKGYNMSGFRVGFAVG-- 267 (404)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGG---GSTTHHHHEEEEEESTTTTTCGGGCCEEEEE--
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCCEEEEEecchhccCchhheEeEec--
Confidence 99999999999999999999999999999999987643111111 1111124789999999999999999999866
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 400 (459)
++++++.+.... .....+++.++|.++..+|++. .+.+++.+++++++++++.+.|+ ++| +++.
T Consensus 268 -~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~ 331 (404)
T 2o1b_A 268 -NKDMIQALKKYQ----THTNAGMFGALQDAAIYALNHY------DDFLEEQSNVFKTRRDRFEAMLA-KAD----LPFV 331 (404)
T ss_dssp -CHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HTT----CCEE
T ss_pred -CHHHHHHHHHHH----hhccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-hcC----Ceec
Confidence 888555554332 2223467788888887777542 23467889999999999999999 876 5777
Q ss_pred cCCcceeeecCC----C-HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 401 LRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 401 ~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+++|+|+|+.+ + .+++++|++++||.+.|| + ||+++. +++++++++++|.+++++.
T Consensus 332 ~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 332 HAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp CCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGGG
T ss_pred CCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhh
Confidence 788899888754 2 355778786679999875 2 999998 8899999999999988763
No 30
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1e-43 Score=353.19 Aligned_cols=357 Identities=17% Similarity=0.165 Sum_probs=283.3
Q ss_pred CCCCCCccchhHHHhhhC--CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHh
Q 012628 63 TMAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF 140 (459)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~ 140 (459)
...+++++.++...++.. .++++|+|+.|.+ ..++ ++.+.+++.+.+.... ..|++..|..++|+++++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~ 92 (389)
T 1o4s_A 19 SEIPISKTMELDAKAKALIKKGEDVINLTAGEP----DFPT-PEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIG 92 (389)
T ss_dssp HHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHH
T ss_pred hhcCccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHH
Confidence 334566666666544321 2468999999987 3333 7889999998886543 578888899999999999987
Q ss_pred cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012628 141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~ 220 (459)
..+|..+++++|++ |+|++++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.++
T Consensus 93 ~~~g~~~~~~~v~~--~~g~t~al~~~~~~--l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 168 (389)
T 1o4s_A 93 ERYKKDISPDQVVV--TNGAKQALFNAFMA--LLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVE 168 (389)
T ss_dssp HHHTCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHH
T ss_pred HHhCCCCCHHHEEE--ecCHHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHH
Confidence 66666667889999 99999999998443 367999999999999999999999999999999864346789999999
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012628 221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (459)
Q Consensus 221 ~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (459)
+++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++ ...++..+....+++++++
T Consensus 169 ~~l~~---~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g---~~~~~~~~~~~~~~~i~~~ 242 (389)
T 1o4s_A 169 GLLVG---KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD---EFTSILDVSEGFDRIVYIN 242 (389)
T ss_dssp HTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS---CCCCHHHHCSSSTTEEEEE
T ss_pred Hhccc---CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCCHhhcCCCCCcEEEEe
Confidence 98875 67888889999999999999999999999999999999999999988653 1123323311246799999
Q ss_pred cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012628 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 380 (459)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 380 (459)
||||.+|++|+|+||+++ +++..+.+... ....+.+++.++|.++..+|++. +++.++++++++
T Consensus 243 s~sK~~~~~G~r~G~l~~---~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~~~~~~ 306 (389)
T 1o4s_A 243 GFSKSHSMTGWRVGYLIS---SEKVATAVSKI----QSHTTSCINTVAQYAALKALEVD---------NSYMVQTFKERK 306 (389)
T ss_dssp ESTTTTTCGGGCCEEEEC---CHHHHHHHHHH----HHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHHHHHHH
T ss_pred echhhcCCcccceEEEEe---CHHHHHHHHHH----hhhcccCCCHHHHHHHHHHHhcc---------HHHHHHHHHHHH
Confidence 999999999999999965 77755544432 22223466778888888888764 257788899999
Q ss_pred HHHHHHHhhccCCCCCcccccCCcceeeecCC--CH-HHHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHHH
Q 012628 381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLAD 449 (459)
Q Consensus 381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~~ 449 (459)
+++.+.|+ ++| +++..+++|+|+|+.+ +. ++.++|++++||.+.|| + |||++. ++++++++++
T Consensus 307 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~~l~~~l~ 380 (389)
T 1o4s_A 307 NFVVERLK-KMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALD 380 (389)
T ss_dssp HHHHHHHH-HTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHH
T ss_pred HHHHHHHH-hcC----CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHHHHHHHHH
Confidence 99999999 876 5677788899988765 34 45677775679999876 2 999997 9999999999
Q ss_pred HHHHHHhh
Q 012628 450 AIIDSYHN 457 (459)
Q Consensus 450 ~l~~~~~~ 457 (459)
+|.+++++
T Consensus 381 ~l~~~l~~ 388 (389)
T 1o4s_A 381 RIEDFLNS 388 (389)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99998864
No 31
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=2.6e-43 Score=356.86 Aligned_cols=342 Identities=15% Similarity=0.143 Sum_probs=271.1
Q ss_pred CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhc----CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
..++++|+|+.|.+ +.+. +|.|.+++.+.+.. .....|++..|.++||+++++++. +|..+++++|++
T Consensus 66 ~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~- 137 (449)
T 3qgu_A 66 NPDAKIISLGIGDT----TEPL-PKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI- 137 (449)
T ss_dssp CTTCCCEECSSCCC----CCCC-CHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE-
T ss_pred CCCCCEEEeeCCCC----CCCC-CHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE-
Confidence 34568999999976 4443 88999999888762 233689888999999999999986 677777899999
Q ss_pred ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCC----------eeeeeeecCCCCCCCHHHHHHHHHc
Q 012628 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP----------WSEYRYYDPKTVGLDFEGMIADIKA 225 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~----------v~~v~~~~~~~~~~d~e~l~~~i~~ 225 (459)
|+|+++++.++ ...+.+||+|++++|+|.+|...++..|++ ++.+|+++++++..|++.+
T Consensus 138 -t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 207 (449)
T 3qgu_A 138 -SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------ 207 (449)
T ss_dssp -ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------
T ss_pred -ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc------
Confidence 99999999987 334789999999999999999999999998 9999986554566665442
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012628 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (459)
Q Consensus 226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (459)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.||||.
T Consensus 208 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~ 283 (449)
T 3qgu_A 208 --KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKY 283 (449)
T ss_dssp --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGG
T ss_pred --CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhh
Confidence 2566777789999999999999999999999999999999999999987631 122222222224578999999999
Q ss_pred cccCCCCcceEEEEeCChhHHHH----HHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012628 306 LGLYAERIGAMNVVCSSSDLAAR----VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ 381 (459)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (459)
||++|+|+||+++ +++.++. +...+.......+.+++.++|.++..+|.+.. .+++++++++++++++
T Consensus 284 ~g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~ 355 (449)
T 3qgu_A 284 AGFTGVRLGWTVV---PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYKENAQ 355 (449)
T ss_dssp GTCTTCCCEEEEC---CTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHHHHH
T ss_pred cCCccceeEEEec---CHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHHHHHH
Confidence 9999999999965 6664331 11122222334455788889998888887532 2447888999999999
Q ss_pred HHHHHHhhccCCCCCcccccCCcceeeecCC---C-HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHH
Q 012628 382 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYL 447 (459)
Q Consensus 382 ~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~ 447 (459)
++.+.|+ ++| +++..+++++|+|+.+ + .+++++|++++||.+.|| + |||++. ++++++++
T Consensus 356 ~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~ 429 (449)
T 3qgu_A 356 ILKTTFT-EMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEA 429 (449)
T ss_dssp HHHHHHH-HTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHH-HCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHH
Confidence 9999999 887 6788888899999865 2 456778888789999886 2 999877 99999999
Q ss_pred HHHHHHHHhh
Q 012628 448 ADAIIDSYHN 457 (459)
Q Consensus 448 ~~~l~~~~~~ 457 (459)
+++|++++++
T Consensus 430 l~~l~~~~~~ 439 (449)
T 3qgu_A 430 VRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 32
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=3.5e-43 Score=353.95 Aligned_cols=360 Identities=17% Similarity=0.224 Sum_probs=277.7
Q ss_pred CCceeecccccCCCCCCccCcHHH--HHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCc---eEEeec
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVV--KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR---VATVQG 157 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v--~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~---i~~~~t 157 (459)
+++|||+.|.|. ..+. ++.+ .+++.+.+.......|++..|.+++|+++++++...+ ..+++++ |++ |
T Consensus 47 ~~~i~l~~g~~~-~~~~---~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~--t 119 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG---KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV--T 119 (430)
T ss_dssp TCSEECCCSSCE-ETTE---ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE--E
T ss_pred CCcEEeeeeecc-CCCC---chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE--c
Confidence 578999999872 1121 4444 5555554433123689888899999999999986553 5556788 999 9
Q ss_pred ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
+|++++++++.+ ..+.+||+|++++|+|..+...++. .|++++.+|++++ ++++|++++++++++.+.++++++++
T Consensus 120 ~g~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~v~i~ 196 (430)
T 2x5f_A 120 NALTHGLSLVGD--LFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMILN 196 (430)
T ss_dssp SHHHHHHHHHHH--HHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT-TSCBCSHHHHHHHHHCCSSEEEEEEC
T ss_pred CCchHHHHHHHH--HHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc-cCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence 999999999844 3367999999999999999999999 9999999998643 37899999999998644467888889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-----cCCeeEEeccCCCCCCCCCCCChhHHH-HHHhcCCe---EEEEEcCCcCcc
Q 012628 237 CAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSVR-LFATRGME---LLVAQSYSKNLG 307 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l~~~-----~~~~ii~Deay~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~S~SK~~~ 307 (459)
+||||||.+++.+++++|+++|++ ||+++|+||+|.++.+++. ...++. .+....++ +++++||||.||
T Consensus 197 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 274 (430)
T 2x5f_A 197 YPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTNLHSNAILPIRLDGATKEFF 274 (430)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHTTCCTTEEEEEEEEHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhhccCCcceEEEEEecccCCC
Confidence 999999999999999999999999 9999999999999987531 122332 33222567 899999999999
Q ss_pred cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG-NPALFDEWKAEMEMMAGRIKNVRQKLFDS 386 (459)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (459)
++|+|+||+++++.+++..+.+........+..+.+++.++|.++..+|+ +.+ |.+++++.+++++++++++.+.
T Consensus 275 ~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~ 350 (430)
T 2x5f_A 275 AWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQ----FDKEIEQNIQTLKERYEVTKEV 350 (430)
T ss_dssp CGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999844334777666555433221222455788899999988887 753 3566778999999999999999
Q ss_pred HhhccCCCCCcccccCCcceeeecCC---CH-HHHHHHHhcccEEEcCCC----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 387 LSAKDKSGKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 387 L~~~~g~~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg----Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
|+ +...+.++.+..+++|+|+|+.+ +. ++.++|++++||.+.||+ |||++..+++++++++++|+++++++
T Consensus 351 L~-~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 351 VY-ADQYHSHWQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp HT-CGGGTTTEEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred HH-hhCCCCCceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 98 53101126777888999988754 34 456777775799999974 99999448999999999999999876
Q ss_pred C
Q 012628 459 S 459 (459)
Q Consensus 459 ~ 459 (459)
+
T Consensus 430 ~ 430 (430)
T 2x5f_A 430 R 430 (430)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=2.8e-43 Score=354.54 Aligned_cols=344 Identities=14% Similarity=0.048 Sum_probs=271.8
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeeccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS 159 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g 159 (459)
+++|+|+.|.+ ..+ .++.+.+++.+.+... ....|++..|..++|+++++++...+|..++++ +|++ |+|
T Consensus 37 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g 109 (429)
T 1yiz_A 37 YKPLNLGQGFP----DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVG 109 (429)
T ss_dssp HCCEECCSSSC----SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred CCEEEecCCCC----CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEE--ecC
Confidence 47899999987 333 3789999999888541 136788888999999999999866556556688 9999 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC--------CCCCCHHHHHHHHHcCCCCcE
Q 012628 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPGGSF 231 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~--------~~~~d~e~l~~~i~~~~~~~~ 231 (459)
++++++++.+. .+.+||+|+++.|+|..+...++..|++++.+|+++++ ++.+|++.+++++++ +++
T Consensus 110 ~~~a~~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~ 184 (429)
T 1yiz_A 110 AYEALYATIQG--HVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE---KTK 184 (429)
T ss_dssp HHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT---TEE
T ss_pred hHHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhcc---Cce
Confidence 99999998443 36799999999999999999999999999999986432 568999999999864 678
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012628 232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (459)
Q Consensus 232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (459)
++++++||||||.+++++++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.||||.+|++|+
T Consensus 185 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 185 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhccCCcCceEEEecchhccCCCCc
Confidence 888899999999999999999999999999999999999999887531 111221111134579999999999999999
Q ss_pred CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 312 RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN-----PALFDEWKAEMEMMAGRIKNVRQKLFDS 386 (459)
Q Consensus 312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (459)
|+||+++ +++.++.+... ......+++.++|.++..+|++ ..+ .+++++.+++++++++++.+.
T Consensus 263 r~G~~~~---~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ 331 (429)
T 1yiz_A 263 KIGWAYG---PEALLKNLQMV----HQNCVYTCATPIQEAIAVGFETELKRLKSP----ECYFNSISGELMAKRDYMASF 331 (429)
T ss_dssp CCEEEES---CHHHHHHHHHH----HHTTTCCCCHHHHHHHHHHHHHHHTTTTST----TSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEe---CHHHHHHHHHH----HhhcccCCChHHHHHHHHHHhcccccccch----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999865 77755544332 2223346777788777777754 211 234678899999999999999
Q ss_pred HhhccCCCCCcccccCCcceeeecCCC-----------------HHHHHHHHhcccEEEcCC-------------C--cE
Q 012628 387 LSAKDKSGKDWSFILRQIGMFSFTGLN-----------------KAQSDNMTNKWHVYMTKD-------------G--RI 434 (459)
Q Consensus 387 L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------------~~~~~~ll~~~gI~v~~g-------------g--Ri 434 (459)
|+ ++| +.+..+++|+|+|+.+. .+++++|++++||.+.|| + ||
T Consensus 332 L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRi 406 (429)
T 1yiz_A 332 LA-EVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRY 406 (429)
T ss_dssp HH-HHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEE
T ss_pred HH-hCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEE
Confidence 99 876 57777888999887542 244667776679999874 2 99
Q ss_pred EEccCChhhHHHHHHHHHHHHhh
Q 012628 435 SLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 435 s~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
+++. +++++++++++|.+++++
T Consensus 407 s~~~-~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 407 CFFK-KDENLQKAAEILRKWKGS 428 (429)
T ss_dssp ECCS-CHHHHHHHHHHHHHHSCC
T ss_pred EecC-CHHHHHHHHHHHHHhccC
Confidence 9987 999999999999998764
No 34
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.7e-43 Score=354.15 Aligned_cols=341 Identities=15% Similarity=0.100 Sum_probs=268.3
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT 161 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt 161 (459)
++.|+|+.|.+ ..+ .++.+.+++.+.++.. ...|.+..|..++|+++++++...+|..++++ +|++ |+|++
T Consensus 25 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~--t~g~~ 96 (411)
T 2o0r_A 25 IGAVNLGQGFP----DED-GPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLV--TVGAT 96 (411)
T ss_dssp TTCEESSCSSC----SSC-CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--EEHHH
T ss_pred CCeeeccCcCC----CCC-CCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEE--eCCHH
Confidence 46899999987 333 3788999999988654 36898888999999999999876666666677 9999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecC-CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~-~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++.++.+. .+.+||+|++++|+|..+...++..|++++.+|++++ .++.+|++.+++++++ +++++++++|+|
T Consensus 97 ~al~~~~~~--~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~v~l~~~~n 171 (411)
T 2o0r_A 97 EAIAAAVLG--LVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP---RTRALIINSPHN 171 (411)
T ss_dssp HHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT---TEEEEEEESSCT
T ss_pred HHHHHHHHH--hcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc---CceEEEEeCCCC
Confidence 999998433 3679999999999999999999999999999998643 2467999999999875 678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.||||.+|++|+|+||+++
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 247 (411)
T 2o0r_A 172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG-- 247 (411)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEEEeechhhcCCccceEEEEee--
Confidence 999999999999999999999999999999999886531 1112212111235799999999999999999999965
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 400 (459)
++++++.+..... ....+.+.++|.++...|+.. .+.+++.+++++++++++.+.|+ ++| +.+.
T Consensus 248 -~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~ 311 (411)
T 2o0r_A 248 -PAELIAGVRAAKQ----YLSYVGGAPFQPAVALALDTE------DAWVAALRNSLRARRDRLAAGLT-EIG----FAVH 311 (411)
T ss_dssp -CHHHHHHHHHHHH----HHTSCCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHT----CEEC
T ss_pred -CHHHHHHHHHHHh----hccCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-HcC----CEec
Confidence 7775555443322 112244556677776666432 23467889999999999999999 776 5777
Q ss_pred cCCcceeeecCC------CH-HHHHHHHhcccEEEcCC-----------------C----cEEEccCChhhHHHHHHHHH
Q 012628 401 LRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD-----------------G----RISLAGLSLAKCEYLADAII 452 (459)
Q Consensus 401 ~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g-----------------g----Ris~~~~~~e~i~~~~~~l~ 452 (459)
.+++|+|+|+.+ +. ++.++|++++||.+.+| + |||++. +++++++++++|+
T Consensus 312 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~~~~l~ 390 (411)
T 2o0r_A 312 DSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIRRLS 390 (411)
T ss_dssp CCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHHHHHHG
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 788898888754 23 45667776679998652 2 999987 8999999999999
Q ss_pred HHHhh
Q 012628 453 DSYHN 457 (459)
Q Consensus 453 ~~~~~ 457 (459)
+++++
T Consensus 391 ~~~~~ 395 (411)
T 2o0r_A 391 VLAER 395 (411)
T ss_dssp GGGC-
T ss_pred HHHhc
Confidence 87754
No 35
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=7.6e-43 Score=346.41 Aligned_cols=336 Identities=12% Similarity=0.114 Sum_probs=266.7
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccch
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT 161 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt 161 (459)
+++|+|+.|.+ ..+ .++.+.+++.+.+... ...|++..|..++|+++++++...+|..++++ +|++ |+|++
T Consensus 30 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g~~ 101 (386)
T 1u08_A 30 HQAINLSQGFP----DFD-GPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT 101 (386)
T ss_dssp TTCEECCCSSC----SSC-CCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred CCeEEecCCCC----CCC-CCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--cCChH
Confidence 47899999987 333 3789999999888653 36898888999999999999866556666688 9999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+++ +++.+|++++++++++ +++++++++||||
T Consensus 102 ~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~---~~~~v~l~~p~np 175 (386)
T 1u08_A 102 EALYAAITA--LVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLSE---RTRLVILNTPHNP 175 (386)
T ss_dssp HHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCCT---TEEEEEEESSCTT
T ss_pred HHHHHHHHH--hCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCc-ccCcCCHHHHHHhhcc---cCEEEEEeCCCCC
Confidence 999998443 367999999999999999999999999999999853 3578999999999864 6788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+....++++++.||||.+|++|+|+||+++
T Consensus 176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--- 250 (386)
T 1u08_A 176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG--HASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA--- 250 (386)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC--CCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC---
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCC--CcChhcccCccCcEEEEecchhhcCCcccceEEEEc---
Confidence 999999999999999999999999999999998875321 112211111235799999999999999999999965
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 401 (459)
+++..+.+..... ....+++.++|.++..+|++. .+++++.+++++++++++.+.|+ ++| +++..
T Consensus 251 ~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~ 315 (386)
T 1u08_A 251 PAPISAEIRKVHQ----YLTFSVNTPAQLALADMLRAE------PEHYLALPDFYRQKRDILVNALN-ESR----LEILP 315 (386)
T ss_dssp CHHHHHHHHHHHH----HHTSSCCHHHHHHHHHHHHHC------THHHHTHHHHHHHHHHHHHHHTT-SSS----CEECC
T ss_pred CHHHHHHHHHHHH----hhccCCChHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHHHHHHHH-HCC----CeecC
Confidence 7775555443222 222356677777777776532 13367889999999999999999 876 57777
Q ss_pred CCcceeeecCC------CH-HHHHHHHhcccEEEcCC--------C----cEEEccCChhhHHHHHHHHHH
Q 012628 402 RQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD--------G----RISLAGLSLAKCEYLADAIID 453 (459)
Q Consensus 402 ~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g--------g----Ris~~~~~~e~i~~~~~~l~~ 453 (459)
+++|+|+|+.+ +. ++.++|++++||.+.|| + |||++. +++++++++++|++
T Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 316 CEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp CCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred CCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 88899988754 23 44566776789999764 2 999987 89999999999864
No 36
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=3.6e-43 Score=347.33 Aligned_cols=339 Identities=14% Similarity=0.115 Sum_probs=274.5
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
++++|||+.|.+ ..+ .++.+.+++.+.+.... ..|++ .| +++|+++++++...++..+++++|++ |+|++
T Consensus 22 g~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~ 91 (377)
T 3fdb_A 22 GQGVLPLWVAES----DFS-TCPAVLQAITDAVQREA-FGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPDVV 91 (377)
T ss_dssp CTTSEECCSSCC----CSC-CCHHHHHHHHHHHHTTC-CSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCeeeecccCC----CCC-CCHHHHHHHHHHHHcCC-CCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCChH
Confidence 468999999976 444 38999999999887643 68988 77 89999999999877777777899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++++++.+ ..+.+||+|+++.|+|..+...++..|++++.+|+++ + +|++++++++++ +++++++++||||
T Consensus 92 ~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~--~d~~~l~~~l~~---~~~~v~i~~p~np 162 (377)
T 3fdb_A 92 RGLYIAID--HFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG--G--INLHDVEKGFQA---GARSILLCNPYNP 162 (377)
T ss_dssp HHHHHHHH--HHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT--S--CCHHHHHHHHHT---TCCEEEEESSBTT
T ss_pred HHHHHHHH--HhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC--C--CCHHHHHHHhcc---CCCEEEEeCCCCC
Confidence 99999843 3467999999999999999999999999999999842 2 999999999987 5678888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++++|+++|++||+++|+||+|.++.+++. ....++..+ ...++++++.||||.+|++|+|+||+ +++
T Consensus 163 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G~~--~~~ 238 (377)
T 3fdb_A 163 LGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQ-HTVAAGVSD-TAASVCITITAPSKAWNIAGLKCAQI--IFS 238 (377)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSCH-HHHHHEEEEECSTTTTTCGGGCCEEE--ECC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCC-CCcccHHHc-cCCCcEEEEEeChHhccCcchhheEE--EeC
Confidence 99999999999999999999999999999999887530 111222111 12457899999999999999999998 455
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~ 400 (459)
+++..+. +.........+++.+++.++...|.+. .+++++.+++++++++++.+.|+ +. + ++.+.
T Consensus 239 ~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~~ 304 (377)
T 3fdb_A 239 NPSDAEH----WQQLSPVIKDGASTLGLIAAEAAYRYG------TDFLNQEVAYLKNNHDFLLHEIP-KRIP---GAKIT 304 (377)
T ss_dssp SHHHHHH----HHHSCHHHHCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHST---TCEEC
T ss_pred CHHHHHH----HHHHHHhhcCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CceEe
Confidence 6774443 333333334477888888877776543 23468889999999999999999 74 2 26888
Q ss_pred cCCcceeeecCC-----CHHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 401 LRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 401 ~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+++++++|+.+ +.++++.+++++||.+.|| + |||++. +++++++++++|+++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 305 PMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp CCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTTC
T ss_pred cCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 899999988744 4467888888789999876 2 999997 8999999999999998865
No 37
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=1.9e-42 Score=346.93 Aligned_cols=370 Identities=15% Similarity=0.152 Sum_probs=279.9
Q ss_pred CCccchhHHHhhhCC-CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhc----
Q 012628 67 PDPILGVSEAFKADT-DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG---- 141 (459)
Q Consensus 67 ~~~i~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~---- 141 (459)
++++.++.+.+.... .+++|+|+.|.|-.....+ .++.+.+++.+.+.......|++..|..++|+++++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~ 94 (416)
T 1bw0_A 16 FNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLL-TSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVH 94 (416)
T ss_dssp CCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSC-CCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHhhcCCCeEEecCcCCCcccCCC-CCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcc
Confidence 344555554443222 2478999999972211233 3889999999888654346798888999999999999872
Q ss_pred --CCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHH
Q 012628 142 --ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM 219 (459)
Q Consensus 142 --~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l 219 (459)
..|..+++++|++ |+|++++++++... .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.+
T Consensus 95 ~~~~~~~~~~~~v~~--~~g~~~al~~~~~~--l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 170 (416)
T 1bw0_A 95 KEELKSTIVKDNVVL--CSGGSHGILMAITA--ICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEI 170 (416)
T ss_dssp STTTGGGCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHH
T ss_pred cccCCCCCCcceEEE--eCChHHHHHHHHHH--hCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHH
Confidence 3566677899999 99999999998443 36799999999999999999999999999999986544678999999
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC--ChhHHHHHHhcCCeEE
Q 012628 220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFATRGMELL 297 (459)
Q Consensus 220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~--~~~~~~~~~~~~~~~i 297 (459)
++++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++... ...++.. ....++++
T Consensus 171 ~~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~~~~i 246 (416)
T 1bw0_A 171 RRLKDD---KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVAD-FETTVPRV 246 (416)
T ss_dssp HHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTS-SCCSCCEE
T ss_pred HHHhcc---CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHH-ccCCCcEE
Confidence 999875 67788889999999999999999999999999999999999999987653200 1111111 12234689
Q ss_pred EEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012628 298 VAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 376 (459)
Q Consensus 298 ~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 376 (459)
+++||||.|+++|+|+||+++ +++ +..+.+...+...... ..+++.++|.++..+|+... .+.+++.++++
T Consensus 247 ~~~s~sK~~~~~Glr~G~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~ 318 (416)
T 1bw0_A 247 ILGGTAKNLVVPGWRLGWLLY--VDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTP-----QEHLDQIVAKI 318 (416)
T ss_dssp EEEESTTTTSCGGGCCEEEEE--ECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSC-----HHHHHHHHHHH
T ss_pred EEecchhhCCCCCceEEEEEe--eCchhhHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHhccc-----HHHHHHHHHHH
Confidence 999999999999999999954 343 3444454433322111 23677788888877776421 13367888899
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC---------CH-HHHHHHHhcccEEEcCC------C--cEEEcc
Q 012628 377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---------NK-AQSDNMTNKWHVYMTKD------G--RISLAG 438 (459)
Q Consensus 377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l---------~~-~~~~~ll~~~gI~v~~g------g--Ris~~~ 438 (459)
+++++++.+.|+ +++ ++.+..+.+|+|+|+.+ +. +++++|++++||.+.|| + |||++.
T Consensus 319 ~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~ 394 (416)
T 1bw0_A 319 EESAMYLYNHIG-ECI---GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR 394 (416)
T ss_dssp HHHHHHHHHHHT-TST---TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred HHHHHHHHHHHH-hCC---CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecC
Confidence 999999999999 762 26667778888888643 33 45677776679999886 2 999975
Q ss_pred CChhhHHHHHHHHHHHHhhc
Q 012628 439 LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 439 ~~~e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++++|.+++++.
T Consensus 395 -~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 395 -PVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998764
No 38
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=1.1e-42 Score=349.82 Aligned_cols=371 Identities=15% Similarity=0.165 Sum_probs=272.6
Q ss_pred CCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHH---------HHHhhcCCCCCCCCCcccHHH
Q 012628 61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE---------NLMLERGENKEYLPIEGLAAF 131 (459)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~---------~~~~~~~~~~~Y~~~~g~~~l 131 (459)
++...+++++.++.+..... .+++|+|+.|.| |...+|. .....++ ...... ..+|.+..|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p-~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~l 83 (425)
T 2r2n_A 10 ASAARNPSPIRTMTDILSRG-PKSMISLAGGLP-NPNMFPF--KTAVITVENGKTIQFGEEMMKR--ALQYSPSAGIPEL 83 (425)
T ss_dssp HHHTCCCCSGGGHHHHHHHS-CTTCEECCCCCC-CGGGCSE--EEEEEEETTSCCEEECHHHHHH--HTSCCCTTCCHHH
T ss_pred HHhcCCCchHHHHHHHhhcC-CCCeEEcCCcCC-CchhCCH--HHHHHHHhhcccccccccchhh--hcCCCCCCCCHHH
Confidence 34445567787777666532 357999999998 4333321 1000000 010111 2579999999999
Q ss_pred HHHHHHHHhcCCCCccc-------cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeee
Q 012628 132 NKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY 204 (459)
Q Consensus 132 r~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v 204 (459)
|+++++++...+|...+ +++|++ |+|++++++++... .+.+||+|++++|+|..|...++..|++++.+
T Consensus 84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 159 (425)
T 2r2n_A 84 LSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKVFEM--IINPGDNVLLDEPAYSGTLQSLHPLGCNIINV 159 (425)
T ss_dssp HHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHGGGTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEe
Confidence 99999998776676553 368999 99999999998433 36799999999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHcCC---------CCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC
Q 012628 205 RYYDPKTVGLDFEGMIADIKAAP---------GGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274 (459)
Q Consensus 205 ~~~~~~~~~~d~e~l~~~i~~~~---------~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~ 274 (459)
|+++ .++|++.|++.++..+ ++++++ ++++||||||.+++.+++++|+++|++||++||+||+|.++
T Consensus 160 ~~~~---~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~ 236 (425)
T 2r2n_A 160 ASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFL 236 (425)
T ss_dssp CEET---TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred CcCC---CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 9853 2589999999997311 244555 45899999999999999999999999999999999999988
Q ss_pred CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHH
Q 012628 275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN 354 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (459)
.+++. ...++..+ +..+++++++||||.++ +|+|+||+++ ++++++.+.. .......+++.++|.++..
T Consensus 237 ~~~g~--~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~~~---~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~ 305 (425)
T 2r2n_A 237 QFNKF--RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFLTG---PKPLIERVIL----HIQVSTLHPSTFNQLMISQ 305 (425)
T ss_dssp BSSSS--CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEEEE---EHHHHHHHHH----HHHTTTCSSCHHHHHHHHH
T ss_pred cCCCC--CCCCcccc-CCCCCEEEEccchhhcc-CccceEEEec---CHHHHHHHHH----HHHHhcCCCCHHHHHHHHH
Confidence 77532 11122222 33468999999999999 9999999976 7775554443 3223344778889988887
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-----CHHHHHHHHhcccEEEc
Q 012628 355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMT 429 (459)
Q Consensus 355 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~ 429 (459)
+|++.. .+.|.+++++++++++++++.+.+.|+ +. +|+...+..+.+|+|+|+.+ +.+++.+++.++||.+.
T Consensus 306 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~-~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 382 (425)
T 2r2n_A 306 LLHEWG-EEGFMAHVDRVIDFYSNQKDAILAAAD-KW-LTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLML 382 (425)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECE
T ss_pred HHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence 776411 122456688999999999999999998 74 11112456788999999754 23544555556799998
Q ss_pred CC-----------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 430 KD-----------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 430 ~g-----------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
|| + |||++..+++++++++++|+++++++
T Consensus 383 pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 383 PGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 74 2 99998559999999999999998753
No 39
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=1.8e-42 Score=346.15 Aligned_cols=364 Identities=17% Similarity=0.144 Sum_probs=278.6
Q ss_pred CCCCCCCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHh
Q 012628 61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF 140 (459)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~ 140 (459)
++.......+. ....+.++ ++++|+|+.|.|. ....+ .++.+.+++.+.+.... ..|++..|.+++|+++++++.
T Consensus 18 ~~~~~~~~~~~-~~~~~~~~-g~~~i~l~~~~~~-~~~~~-~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~l~ 92 (406)
T 1xi9_A 18 SVEYAIRDVVL-PARELEKK-GIKVIRLNIGDPV-KFDFQ-PPEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREK 92 (406)
T ss_dssp TCCC--------CHHHHHHT-TCCCEECCCCCGG-GTTCC-CCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHH
T ss_pred cCChhHHHHHH-HHHHHHHc-CCCEEEecCCCCC-cCCCC-CCHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHH
Confidence 34333344444 44555544 4689999999872 11223 37889999988886543 579888899999999999998
Q ss_pred cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012628 141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~ 220 (459)
..+|..+++++|++ |+|++++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.++
T Consensus 93 ~~~g~~~~~~~v~~--t~g~~~al~~~~~~--l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 168 (406)
T 1xi9_A 93 RKNGVDITPDDVRV--TAAVTEALQLIFGA--LLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 168 (406)
T ss_dssp HHHCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HhcCCCCCHHHEEE--cCChHHHHHHHHHH--hCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence 76677777899999 99999999998443 367999999999999999999999999999999964356778999999
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEE
Q 012628 221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVA 299 (459)
Q Consensus 221 ~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 299 (459)
+++++ +++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++ ...++..+ + .++ ++++
T Consensus 169 ~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~-~-~~~~~i~~ 240 (406)
T 1xi9_A 169 KKITD---RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG---EHISPGSL-T-KDVPVIVM 240 (406)
T ss_dssp HHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS---CCCCHHHH-C-SSSCEEEE
T ss_pred HhhCc---CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHc-C-CCceEEEE
Confidence 99975 67888889999999999999999999999999999999999999988642 12233333 2 456 8999
Q ss_pred EcCCcCcccCCCCcceEEEEeCCh----hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYAERIGAMNVVCSSS----DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
+||||.++++|+|+||+++ +.++ +.++.+..... .. .+++.++|.++..+|+.. . +.+++++++
T Consensus 241 ~s~sK~~~~~G~r~G~~~~-~~~~~~~~~l~~~l~~~~~----~~-~~~~~~~~~a~~~~l~~~-~-----~~~~~~~~~ 308 (406)
T 1xi9_A 241 NGLSKVYFATGWRLGYMYF-VDPENKLSEVREAIDRLAR----IR-LCPNTPAQFAAIAGLTGP-M-----DYLKEYMKK 308 (406)
T ss_dssp EESTTTTCCGGGCCEEEEE-ECTTCTTHHHHHHHHHHHH----HT-CCSCSHHHHHHHHHHHSC-C-----HHHHHHHHH
T ss_pred eccccccCCCccEEEEEEE-ecCchhHHHHHHHHHHHHH----hh-cCCCHHHHHHHHHHHhCC-c-----HHHHHHHHH
Confidence 9999999999999999961 1366 75555443222 22 356677788887777432 1 226788899
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecC------CCH-HHHHHHHhcccEEEcCC--------C--cEEEcc
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG------LNK-AQSDNMTNKWHVYMTKD--------G--RISLAG 438 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~------l~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~ 438 (459)
++++++++.+.|+ +++ ++.+..+++|+|+|+. .+. ++.++|++++||.+.+| + ||+++.
T Consensus 309 ~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~ 384 (406)
T 1xi9_A 309 LKERRDYIYKRLN-EIP---GISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP 384 (406)
T ss_dssp HHHHHHHHHHHHH-TST---TEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS
T ss_pred HHHHHHHHHHHHH-hCC---CCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecC
Confidence 9999999999999 772 2677778889998853 233 45667775679999875 2 999984
Q ss_pred CChhhHHHHHHHHHHHHhhc
Q 012628 439 LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 439 ~~~e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++++|.++++++
T Consensus 385 -~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 385 -PIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp -CHHHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 40
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=1.9e-42 Score=342.21 Aligned_cols=349 Identities=12% Similarity=0.052 Sum_probs=273.2
Q ss_pred CCCccchhHHHhhh-CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCC
Q 012628 66 PPDPILGVSEAFKA-DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN 144 (459)
Q Consensus 66 ~~~~i~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~ 144 (459)
+++++.++.+.++. ..+.++|||+.|.+ ..+ .++.+.+++.+.+.. ...|++..|.+++|+++++++...+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~g~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g 77 (376)
T 3ezs_A 5 EPYPFERLRALLKEITPKKRGLDLGIGEP----QFE-TPKFIQDALKNHTHS--LNIYPKSAFEESLRAAQRGFFKRRFK 77 (376)
T ss_dssp CCCHHHHHHHHHTTCCCSSCCCBCSSCCC----CSC-CCHHHHHHHHTTGGG--GGSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHhhhccCCEEEeCCCCC----CCC-CCHHHHHHHHHhhhh--cCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 45555555554432 11238999999987 444 378999999887732 37898888999999999999977667
Q ss_pred CccccCceEEeecccchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012628 145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 145 ~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
..+++++|++ |+|++++++++.+ ..+.+ ||+|+++.|+|..+...++..|++++.+|+++++ ++++ +++++
T Consensus 78 ~~~~~~~i~~--t~g~~~al~~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~l~~~ 150 (376)
T 3ezs_A 78 IELKENELIS--TLGSREVLFNFPS--FVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN--DFTP-SLNEK 150 (376)
T ss_dssp CCCCGGGEEE--ESSSHHHHHHHHH--HHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG--TSCC-CCCHH
T ss_pred CCCCHHHEEE--CcCcHHHHHHHHH--HHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCC--Ccch-hHHhh
Confidence 6667899999 9999999999843 34678 9999999999999999999999999999985433 3444 66666
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-----cCCeEE
Q 012628 223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-----RGMELL 297 (459)
Q Consensus 223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-----~~~~~i 297 (459)
+.+ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++....+ ..++++
T Consensus 151 ~~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i 224 (376)
T 3ezs_A 151 ELQ---EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFKNVL 224 (376)
T ss_dssp HHH---HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCTTEE
T ss_pred hcc---CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccCcEE
Confidence 765 566777799999999999999999999999999999999999999887641 222222222 457899
Q ss_pred EEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012628 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 377 (459)
++.||||.+|++|+|+||+++ +++..+.+. ........+++.++|.++...|++.+ ++++.+++++
T Consensus 225 ~~~s~sK~~g~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~ 290 (376)
T 3ezs_A 225 VIHSLSKRSSAPGLRSGFIAG---DSRLLEKYK----AFRAYLGYTSANAIQKASEAAWLDDR-------HAEFFRNIYA 290 (376)
T ss_dssp EEEESTTTTTCGGGCCEEEEE---CHHHHHHHH----HHHTTTCCCCCHHHHHHHHHHHHCSH-------HHHHHHHHHH
T ss_pred EEecchhccCCccceeEEEee---CHHHHHHHH----HHHhhhcCCCChHHHHHHHHHHhCcH-------HHHHHHHHHH
Confidence 999999999999999999966 888554443 33333344678888888887777642 3678889999
Q ss_pred HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC--HHHHHHHHhcccEEEcCC----------C--cEEEccCChhh
Q 012628 378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAK 443 (459)
Q Consensus 378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~ 443 (459)
++++.+.+.|+ + +. .+.+|+|+|+.+. .++.++|++++||.+.|| + ||+++. ++++
T Consensus 291 ~~~~~l~~~l~---~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~ 360 (376)
T 3ezs_A 291 NNLKLARKIFK---N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPL 360 (376)
T ss_dssp HHHHHHHHHST---T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHH
T ss_pred HHHHHHHHHhc---C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHH
Confidence 99999998886 3 33 5678999998773 455677777579999864 1 999987 9999
Q ss_pred HHHHHHHHHHHHhhc
Q 012628 444 CEYLADAIIDSYHNV 458 (459)
Q Consensus 444 i~~~~~~l~~~~~~~ 458 (459)
+++++++|++++++.
T Consensus 361 i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 361 LEKPLEIIETYRENH 375 (376)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 41
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=5.5e-43 Score=353.12 Aligned_cols=352 Identities=13% Similarity=0.082 Sum_probs=277.0
Q ss_pred CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
.++++|+|+.|.| ..+ .++.+.+++.+.+.......|++..|.+++|+++++++...+|..+++++|++ |+|+
T Consensus 42 ~g~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~--t~g~ 114 (437)
T 3g0t_A 42 TGTKFCRMEMGVP----GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP--TVGS 114 (437)
T ss_dssp HTCCCEECCCCSC----CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESHH
T ss_pred cCCCEEeccCcCC----CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE--eCCH
Confidence 3568999999997 444 38999999998886533378988889999999999999877777778999999 9999
Q ss_pred hhHHHHHHHHHHHh--CCCC--EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 161 TGSLRLAAALIERY--FPGA--KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 161 t~a~~l~~~~~~~~--~~gd--~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
+++++++.+ ..+ .+|| +|+++.|+|..+...++..|++++.+|++ ++++.+|++.++++++. +++++++++
T Consensus 115 t~al~~~~~--~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~l~ 189 (437)
T 3g0t_A 115 MQGCFVSFL--VANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT--GQFCSIIYS 189 (437)
T ss_dssp HHHHHHHHH--HHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT--TCCCEEEEE
T ss_pred HHHHHHHHH--HHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc--CCceEEEEe
Confidence 999999843 335 7999 99999999999999999999999999996 55678999999999943 267788889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh---hHH-HHHHhcCCeEEEEEcCCcCcccCCCC
Q 012628 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA---SSV-RLFATRGMELLVAQSYSKNLGLYAER 312 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~S~SK~~~~~G~R 312 (459)
+||||||.+++.+++++|+++|++||+++|+||+|..+.+++. ... +++ ..+....++++++.||||.+|++|+|
T Consensus 190 ~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 268 (437)
T 3g0t_A 190 NPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQR 268 (437)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcCccCCCCccce
Confidence 9999999999999999999999999999999999998876521 111 000 12222367899999999999999999
Q ss_pred cceEEEEeCChhHHH-HH---HH----------HHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 313 IGAMNVVCSSSDLAA-RV---KS----------QLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 313 iG~~~~v~~~~~~~~-~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
+||+++ +++.++ .+ .. .+.........+++.++|.++..+|++.. .|.+++++.++++++
T Consensus 269 ~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~ 342 (437)
T 3g0t_A 269 IGVLMI---SGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN---DGEYNFRDSVIEYGR 342 (437)
T ss_dssp CEEEEE---CHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH---TTSCCHHHHHHHHHH
T ss_pred eEEEEE---CHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH---hHHHHHHHHHHHHHH
Confidence 999976 777444 30 00 03333223344778888888877776432 122226788999999
Q ss_pred HHHHHHHHHhhccCCCCCcccc-------cCCcceeeecCC---CH-HHHHHHHhcccEEEcCC--------C--cEEEc
Q 012628 379 VRQKLFDSLSAKDKSGKDWSFI-------LRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKD--------G--RISLA 437 (459)
Q Consensus 379 ~~~~l~~~L~~~~g~~~~~~~~-------~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~g--------g--Ris~~ 437 (459)
+++++.+.|+ ++| +++. ++.+++|+|+.+ +. ++.+.|++ +||.+.|+ + |||++
T Consensus 343 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~iRis~~ 416 (437)
T 3g0t_A 343 KARIMKKMFL-DNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVR-YGMCAITLKTTGSKRNEAMRICTS 416 (437)
T ss_dssp HHHHHHHHHH-TTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHH-TTEECEESTTTTCCCTTCEEEECS
T ss_pred HHHHHHHHHH-HcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHH-cCeEEeeccccCCCCCCEEEEEEe
Confidence 9999999999 876 5666 337889988754 44 45666666 59999886 2 99999
Q ss_pred cCChhhHHHHHHHHHHHHhh
Q 012628 438 GLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 438 ~~~~e~i~~~~~~l~~~~~~ 457 (459)
..+++++++++++|++++++
T Consensus 417 ~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 417 LLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp SSCGGGHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 77999999999999998864
No 42
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-42 Score=343.70 Aligned_cols=336 Identities=15% Similarity=0.079 Sum_probs=268.4
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg 160 (459)
+.++|||+.|.+ ..++ ++.+.+++.+.+.......|++..|..++|+++++++...+|..++++ +|++ |+|+
T Consensus 24 g~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~~g~ 96 (376)
T 2dou_A 24 GVGLIDLSIGST----DLPP-PEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--LIGS 96 (376)
T ss_dssp TCCCEECSSCCC----CCCC-CHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--ESSH
T ss_pred CCCEEeccCCCC----CCCC-CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCCc
Confidence 467999999987 3333 788999999887543236787767999999999999866556656666 8999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+ ++++.+|++.+++++++ +++++++++|||
T Consensus 97 ~~a~~~~~~~--l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~---~~~~v~l~~p~n 169 (376)
T 2dou_A 97 QEGLAHLLLA--LTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWR---EAKVLLLNYPNN 169 (376)
T ss_dssp HHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHH---HEEEEEECSSCT
T ss_pred HHHHHHHHHH--hcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhcc---CceEEEECCCCC
Confidence 9999998433 3669999999999999999999999999999998 45677999999999975 678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
|||.+++.+++++|+++|++||+++|+||+|.++.+++...+.. .+.+..+++++++||||.+|++|+|+||+++
T Consensus 170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 244 (376)
T 2dou_A 170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPL---ALPGAKERVVELFSLSKSYNLAGFRLGFALG-- 244 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG---GSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE--
T ss_pred CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCcEEEEecchhhcCChhheeEEEec--
Confidence 99999999999999999999999999999999988653111111 1122335789999999999999999999966
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 400 (459)
+++.++.+.... .....+++.++|.++..+|++. .+++++.+++++++++++.+.|+ ++ +.+.
T Consensus 245 -~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~-----~~~~ 307 (376)
T 2dou_A 245 -SEEALARLERVK----GVIDFNQYAGVLRMGVEALKTP------KEVVRGYARVYRERALGMAEALK-GV-----LSLL 307 (376)
T ss_dssp -CHHHHHHHHHHH----HHHCCCSCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHHHHHT-TT-----SEEC
T ss_pred -CHHHHHHHHHHH----HhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-Hh-----cCcc
Confidence 888555554332 2223356778888888888763 23467889999999999999998 75 3666
Q ss_pred cCCcceeeecCCC-----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHH
Q 012628 401 LRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 401 ~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~ 455 (459)
.+++|+|+|+.+. .++.++|+++ ||.+.|| + ||+++. +++++++++++|++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 308 PPRATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp CCCBSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 7788999887552 3456777776 9999875 2 999987 8999999999998765
No 43
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1.6e-41 Score=342.47 Aligned_cols=354 Identities=16% Similarity=0.178 Sum_probs=275.8
Q ss_pred hhhCCCC-CceeecccccCCCCCCccCcHHHHHHHHHHhhcC-C----------CCCCCCCcccHHHHHHHHHHHhcC--
Q 012628 77 FKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-E----------NKEYLPIEGLAAFNKVTAELLFGA-- 142 (459)
Q Consensus 77 ~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~----------~~~Y~~~~g~~~lr~aia~~l~~~-- 142 (459)
++.++++ .+|+|+.+.. +...+.+.+++.+..... + ...|.+..|.++||+++++++...
T Consensus 31 y~~~~~p~~~i~lg~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~ 104 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRG 104 (435)
T ss_dssp CBTTTBTTSBEECSSCCC------CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred CCcccCCCCeEEeccccc------cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhC
Confidence 4444433 5788887653 334777888877754321 1 146989999999999999998743
Q ss_pred CCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCCCCHHHHHH
Q 012628 143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 143 ~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
++..+++++|++ |+||++++.++.. ..+.+||+|++++|+|..+...+. ..|++++.+|++++.++.+|++.+++
T Consensus 105 ~~~~~~~~~v~~--~~gg~~a~~~~~~--~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 180 (435)
T 3piu_A 105 NKVTFDPNHLVL--TAGATSANETFIF--CLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 180 (435)
T ss_dssp TSSCCCGGGEEE--EEHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHH
T ss_pred CCCCCCHHHEEE--cCChHHHHHHHHH--HhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHH
Confidence 335566899999 9999999999843 346799999999999999998888 78999999999755568899999999
Q ss_pred HHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc------
Q 012628 222 DIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR------ 292 (459)
Q Consensus 222 ~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~------ 292 (459)
++++ ...+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+...
T Consensus 181 ~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~ 258 (435)
T 3piu_A 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDEN 258 (435)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC------
T ss_pred HHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhccccccccc
Confidence 9875 123678888899999999999999999999999999999999999999776542 22233333332
Q ss_pred ---CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012628 293 ---GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM 369 (459)
Q Consensus 293 ---~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 369 (459)
.++++++.||||.||++|+|+||++ +.+++..+. +..... +...+.++|.++..+|.+.++. .+++
T Consensus 259 ~~~~~~~i~i~s~sK~~g~~G~r~G~~~--~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~~~~---~~~~ 327 (435)
T 3piu_A 259 SEVWQRVHVVYSLSKDLGLPGFRVGAIY--SNDDMVVAA----ATKMSS--FGLVSSQTQHLLSAMLSDKKLT---KNYI 327 (435)
T ss_dssp -CGGGGEEEEEESSSSSCCGGGCEEEEE--ESCHHHHHH----HHHHGG--GSCCCHHHHHHHHHHHHCHHHH---HHHH
T ss_pred cCCCCCEEEEEeeecccCCCceeEEEEE--eCCHHHHHH----HHHHhh--cCCCCHHHHHHHHHHhcChHHH---HHHH
Confidence 4678999999999999999999994 445553333 332222 2356678888888888776553 3456
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------HHHHHHHHhcccEEEcCC-------
Q 012628 370 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD------- 431 (459)
Q Consensus 370 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g------- 431 (459)
++.+++++++++++.+.|+ ++| +++..+++|+|+|+.+. .+++++|++++||.+.||
T Consensus 328 ~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 402 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQ-KSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE 402 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS
T ss_pred HHHHHHHHHHHHHHHHHHH-hcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCC
Confidence 7889999999999999999 876 67888888899998653 245678888779999875
Q ss_pred -C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 432 -G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 -g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+ ||+++..+++++++++++|+++++++
T Consensus 403 ~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 403 PGWFRVCFANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp TTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 2 99998668999999999999999865
No 44
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=4.2e-42 Score=340.36 Aligned_cols=342 Identities=10% Similarity=0.086 Sum_probs=271.0
Q ss_pred CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+++++|+|+.|.+ ..+ .++.+.+++.+.+.... ..|++. ..++++++++++...+|..+++++|++ |+|+
T Consensus 22 ~~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~ 91 (383)
T 3kax_A 22 KNEELIHAWIADM----DFE-VPQPIQTALKKRIEHPI-FGYTLP--PENIGDIICNWTKKQYNWDIQKEWIVF--SAGI 91 (383)
T ss_dssp SSSCCEECCCSSC----SSC-CCHHHHHHHHHHHHSCC-CCCCCC--CTTHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred CCCCeeecccccC----CCC-CCHHHHHHHHHHHhcCC-CCCCCC--CHHHHHHHHHHHHHHhCCCCChhhEEE--cCCH
Confidence 3568999999986 444 38999999999887543 677654 678999999998877776677899999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC-CCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~ 239 (459)
+++++++.+ ..+.+||+|+++.|+|..+...++..|++++.+|++.++ ++.+|++.+++++++ +++++++++||
T Consensus 92 ~~a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~i~~p~ 166 (383)
T 3kax_A 92 VPALSTSIQ--AFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQ---GVKLMLLCSPH 166 (383)
T ss_dssp HHHHHHHHH--HHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTT---TCCEEEEESSB
T ss_pred HHHHHHHHH--HhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCc---CCeEEEEeCCC
Confidence 999999843 347799999999999999999999999999999986332 466999999999954 67778889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+... .++++++.||||.+|++|+|+||+
T Consensus 167 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~-- 242 (383)
T 3kax_A 167 NPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHT--HTPFASLSEELAARTITCMAPSKTFNIAGLQASII-- 242 (383)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE--
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCC--ceeHhhcCccccCcEEEEEEChhhccCcchhheEE--
Confidence 99999999999999999999999999999999998875321 1122111111 367899999999999999999998
Q ss_pred EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCc
Q 012628 319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDW 397 (459)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~ 397 (459)
++++++..+.+...... ..+.+++.+++.++...|.+. .+.+++.+++++++++++.+.|+ + ++ ++
T Consensus 243 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~ 309 (383)
T 3kax_A 243 IIPNEKLRQAFTSIQYR---QGFHGLNIFAYTAMQSAYTEC------NDWLNEIRFYIEDNAKFACEYIK-DHIP---TL 309 (383)
T ss_dssp ECCCHHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHTTTC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT---TC
T ss_pred EeCCHHHHHHHHHHHhh---cccCCCCHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---Cc
Confidence 44567755554433222 223467888888888888763 23467888999999999999998 7 42 26
Q ss_pred ccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHH
Q 012628 398 SFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 398 ~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~ 455 (459)
++..+++++++|+.+ +. ++.+.|++++||.+.|| + ||+++. +++++++++++|++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 310 SVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGC-PRSVLEEILNRLRHTF 382 (383)
T ss_dssp EECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSS-CHHHHHHHHHHHHHHH
T ss_pred eEecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 788889999887643 33 45667776789999985 2 999997 8999999999999876
No 45
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=6.4e-42 Score=337.81 Aligned_cols=344 Identities=14% Similarity=0.141 Sum_probs=271.6
Q ss_pred CCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCC
Q 012628 66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143 (459)
Q Consensus 66 ~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~ 143 (459)
+++++.++.+.+.. ..++++|+|+.|.+ ..++ ++.+.+++.+.+.... ..|++..|.+++|+++++++...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~~~ 83 (370)
T 2z61_A 10 ESFEVMDILALAQKLESEGKKVIHLEIGEP----DFNT-PKPIVDEGIKSLKEGK-THYTDSRGILELREKISELYKDKY 83 (370)
T ss_dssp CCCTTHHHHHHHHHHHHTTCCCEECCCCSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHHcCc-cCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45556655544432 12467999999987 3333 7889999998886543 679888899999999999998777
Q ss_pred CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012628 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (459)
Q Consensus 144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i 223 (459)
|..+++++|++ |+|++++++++.+. .+.+||+|++++|+|..+...++..|++++.+| +|++++++++
T Consensus 84 g~~~~~~~v~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l 151 (370)
T 2z61_A 84 KADIIPDNIII--TGGSSLGLFFALSS--IIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEAL 151 (370)
T ss_dssp SCCCCGGGEEE--ESSHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHC
T ss_pred CCCCChhhEEE--CCChHHHHHHHHHH--hcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhc
Confidence 77778899999 99999999998443 367999999999999999999999999988886 6899999998
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC
Q 012628 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS 303 (459)
Q Consensus 224 ~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 303 (459)
++ +++++++++||||||.+++.+ |.++|++||+++|+||+|..+.+++. ..++..+.+..++++++.|||
T Consensus 152 ~~---~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~s 221 (370)
T 2z61_A 152 SD---KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFS 221 (370)
T ss_dssp CS---SEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEEST
T ss_pred cc---CceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecCh
Confidence 75 677888899999999999987 89999999999999999999876531 112212212346799999999
Q ss_pred cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 012628 304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN-PALFDEWKAEMEMMAGRIKNVRQK 382 (459)
Q Consensus 304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~ 382 (459)
|.+|++|+|+||+++ +++..+.+... ......+++.++|.++..+|+. . .+++++.++++++++++
T Consensus 222 K~~~~~G~r~G~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~~ 288 (370)
T 2z61_A 222 KLYAMTGWRIGYVIS---NDEIIEAILKL----QQNLFISAPTISQYAALKAFEKET------EREINSMIKEFDRRRRL 288 (370)
T ss_dssp TTTTCGGGCCEEEEC---CHHHHHHHHHH----HHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHHHHHHHHHH
T ss_pred hccCCccceEEEEEE---CHHHHHHHHHH----HhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHHHHHHHHHH
Confidence 999999999999865 77755554432 2222346778888888777764 2 23467889999999999
Q ss_pred HHHHHhhccCCCCCcccccCCcceeeecCCC--H-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHH
Q 012628 383 LFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--K-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLAD 449 (459)
Q Consensus 383 l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~--~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~ 449 (459)
+.+.|+ ++| +++..+++|+|+|+.+. . ++.++|++++||.+.+| + ||+++. ++++++++++
T Consensus 289 l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~i~~~~~ 362 (370)
T 2z61_A 289 VLKYVK-DFG----WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLE 362 (370)
T ss_dssp HHHHHH-HTT----CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHHHHHHHH
T ss_pred HHHHHH-HcC----CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHHHHHHHH
Confidence 999999 776 57777888999998763 3 45667775679999875 2 999996 9999999999
Q ss_pred HHHHHHh
Q 012628 450 AIIDSYH 456 (459)
Q Consensus 450 ~l~~~~~ 456 (459)
+|.++++
T Consensus 363 ~l~~~l~ 369 (370)
T 2z61_A 363 RIKEFLN 369 (370)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999875
No 46
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=5.4e-41 Score=337.77 Aligned_cols=348 Identities=13% Similarity=0.155 Sum_probs=269.0
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhh--------c--CCCCCCCCCcccHHHHHHHHHHHhcCCCCc--cccC
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--------R--GENKEYLPIEGLAAFNKVTAELLFGADNSV--LKEQ 150 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~--------~--~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~--~~~~ 150 (459)
..+|+|+.++. +..++.+.+++.+... . .....|++..|..++|+++++++...+|.. ++++
T Consensus 36 ~~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~ 109 (428)
T 1iay_A 36 NGVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE 109 (428)
T ss_dssp TSBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred Cceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh
Confidence 36789987654 2225678888775321 0 012678888899999999999998666654 6688
Q ss_pred ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-hhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012628 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A 226 (459)
Q Consensus 151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~ 226 (459)
+|++ |+|++++++++.+ ..+.+||+|++++|+|..|...+ ...|++++.+|+++++++.+|++.+++++++ .
T Consensus 110 ~i~~--~~G~~~ai~~~~~--~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (428)
T 1iay_A 110 RVVM--AGGATGANETIIF--CLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS 185 (428)
T ss_dssp SCEE--EEHHHHHHHHHHH--HHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred hEEE--ccChHHHHHHHHH--HhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence 9999 9999999999843 34679999999999999998755 4789999999986445678999999999874 2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------CCeEEEE
Q 012628 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------GMELLVA 299 (459)
Q Consensus 227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~ 299 (459)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .++++++
T Consensus 186 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~viv~ 263 (428)
T 1iay_A 186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIV 263 (428)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC--CccCHHHhccccccccCCCCcEEEE
Confidence 23678888899999999999999999999999999999999999999776431 11123233323 4688999
Q ss_pred EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 379 (459)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 379 (459)
.||||.||++|+|+||++ +.+++.++.+. .... +.+.+.++|.++..+|++.++. .+++++.+++++++
T Consensus 264 ~s~sK~~g~~Glr~G~~~--~~~~~~~~~~~----~~~~--~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 264 YSLSKDMGLPGFRVGIIY--SFNDDVVNCAR----KMSS--FGLVSTQTQYFLAAMLSDEKFV---DNFLRESAMRLGKR 332 (428)
T ss_dssp EESTTTSSCGGGCEEEEE--ESCHHHHHHHH----HHHT--TSCCCHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEE--eCCHHHHHHHH----HHHh--cccCCHHHHHHHHHHhcChHHH---HHHHHHHHHHHHHH
Confidence 999999999999999994 45566444443 2222 2357788899999999886543 34567889999999
Q ss_pred HHHHHHHHhhccCCCCCcccccCCcceeeecCCC-----------HHHHHHHHhcccEEEcCC--------C--cEEEcc
Q 012628 380 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD--------G--RISLAG 438 (459)
Q Consensus 380 ~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g--------g--Ris~~~ 438 (459)
++++.+.|+ ++| +++..+++|+|+|+.+. .++.++|++++||.+.+| + ||+++.
T Consensus 333 ~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~ 407 (428)
T 1iay_A 333 HKHFTNGLE-VVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFAN 407 (428)
T ss_dssp HHHHHHHHH-HTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSS
T ss_pred HHHHHHHHH-hcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEec
Confidence 999999999 876 56777778999988652 134667777679999875 2 999985
Q ss_pred CChhhHHHHHHHHHHHHhhc
Q 012628 439 LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 439 ~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+++++++++++|++++++.
T Consensus 408 ~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 408 MDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp SCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 59999999999999998764
No 47
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=7.5e-42 Score=339.49 Aligned_cols=345 Identities=12% Similarity=0.098 Sum_probs=272.0
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
+++|||+.|.+ ..+ .++.+.+++.+.+.... ..|++. ..++++++++++...+|..+++++|++ |+|+++
T Consensus 27 ~~~i~~~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g~~~ 96 (391)
T 3dzz_A 27 EKELPMWIAEM----DFK-IAPEIMASMEEKLKVAA-FGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASGVVP 96 (391)
T ss_dssp TTCEECCSSCC----SSC-CCHHHHHHHHHHHTTCC-CCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESCHHH
T ss_pred CCceeccccCC----CCC-CCHHHHHHHHHHHhcCc-CCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCCHHH
Confidence 48999999976 444 38999999999886543 677655 689999999999887777777899999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
+++++.+ ..+.+||+|+++.|+|..+...++..|++++.+|++ ++.++.+|++.+++++++ ++++++++++||||
T Consensus 97 a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~np 172 (391)
T 3dzz_A 97 AISAMVR--QFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNP 172 (391)
T ss_dssp HHHHHHH--HHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTT
T ss_pred HHHHHHH--HhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCC
Confidence 9999844 346799999999999999999999999999999985 344566999999999974 37888888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
||.+++.+++++|+++|++||+++|+||+|.++.+.+. ...++..+... .++++++.||||.+|++|+|+||+++
T Consensus 173 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~-- 248 (391)
T 3dzz_A 173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAII-- 248 (391)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEEC--
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEEEE--
Confidence 99999999999999999999999999999999887531 11122121111 34789999999999999999999944
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSF 399 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~ 399 (459)
+++++.+.+...... ..+.+++.+++.++...|.+. .+.+++.+++++++++++.+.|+ + ++ ++.+
T Consensus 249 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~ 315 (391)
T 3dzz_A 249 PNPDLRARAEESFFL---AGIGEPNLLAIPAAIAAYEEG------HDWLRELKQVLRDNFAYAREFLA-KEVP---EVKV 315 (391)
T ss_dssp CSHHHHHHHHHHHHH---HTCSSCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT---TSEE
T ss_pred CCHHHHHHHHHHHHh---hccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CcEE
Confidence 447755555443221 122355666666666665432 23467889999999999999999 7 42 2678
Q ss_pred ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012628 400 ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNVS 459 (459)
Q Consensus 400 ~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~~ 459 (459)
..+++++++|+.+ +. ++.++|++++||.+.+|. ||+++. +++++++++++|.+++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 316 LDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp CCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTCC
T ss_pred eccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence 8889999888643 44 456677656799999862 999996 99999999999999998763
No 48
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1e-41 Score=341.07 Aligned_cols=360 Identities=12% Similarity=0.118 Sum_probs=280.7
Q ss_pred cCCCCCCCCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHH
Q 012628 59 FEGVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (459)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia 136 (459)
++++...+++++.++...++. ..++++|+|+.|.| ..+ .++.+.+++ +.+.... ..|++..|..++|++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~-~~~~v~~a~-~~l~~~~-~~y~~~~g~~~l~~~la 89 (409)
T 2gb3_A 17 SDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP----DLK-TPEVFFERI-YENKPEV-VYYSHSAGIWELREAFA 89 (409)
T ss_dssp CHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC----CSC-CCTHHHHHH-HHTCCSS-CCCCCTTCCHHHHHHHH
T ss_pred HHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCC----CCC-CCHHHHHHH-HHHhcCC-CCCCCCCCcHHHHHHHH
Confidence 344445566666666654432 12467999999987 333 378899999 8775433 67888889999999999
Q ss_pred HHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCH
Q 012628 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF 216 (459)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~ 216 (459)
+++...+|..+++++|++ |+||+++++++.+. .+.+||+|++++|+|..+...++..|++++.+|+++++++.+ +
T Consensus 90 ~~~~~~~g~~~~~~~v~~--~~g~t~a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~ 164 (409)
T 2gb3_A 90 SYYKRRQRVDVKPENVLV--TNGGSEAILFSFAV--IANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-P 164 (409)
T ss_dssp HHHHHTSCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-C
T ss_pred HHHHHHhCCCCCHHHEEE--eCCHHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-H
Confidence 999887787778899999 99999999998443 367999999999999999999999999999999853344555 8
Q ss_pred HHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012628 217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296 (459)
Q Consensus 217 e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (459)
+.+++++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++ ...++ +....+++
T Consensus 165 ~~l~~~l~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~---~~~~~--~~~~~~~~ 236 (409)
T 2gb3_A 165 QNLESFINE---RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG---EFASA--LSIESDKV 236 (409)
T ss_dssp TTGGGGCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS---CCCCG--GGSCCTTE
T ss_pred HHHHHhhCc---CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC---CCCCc--cccCCCCE
Confidence 888888865 67888889999999999999999999999999999999999999987653 11121 11123579
Q ss_pred EEEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 297 LVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
++++||||.+|++|+|+||+++ ++ ++.+.+... ....+ +++.++|.++..+|+.. .+.+++.+++
T Consensus 237 i~~~s~sK~~g~~G~r~G~~~~---~~~~l~~~l~~~----~~~~~-~~~~~~~~a~~~~l~~~------~~~~~~~~~~ 302 (409)
T 2gb3_A 237 VVIDSVSKKFSACGARVGCLIT---RNEELISHAMKL----AQGRL-APPLLEQIGSVGLLNLD------DSFFDFVRET 302 (409)
T ss_dssp EEEEESTTTTTCGGGCCEEEEC---SCHHHHHHHHHH----HHHSC-CCCHHHHHHHHHHHTCC------HHHHHHHHHH
T ss_pred EEEecchhccCCccceEEEEEE---CcHHHHHHHHHH----HhccC-CCCHHHHHHHHHHHhcc------HHHHHHHHHH
Confidence 9999999999999999999954 55 755544432 22333 67788888888888653 2346788899
Q ss_pred HHHHHHHHHHHHhhccCCCCCccc-ccCCcceeeecCC---CH-HHHHHHHhc-----ccEEEcCC-----------C--
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL---NK-AQSDNMTNK-----WHVYMTKD-----------G-- 432 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~g~f~~~~l---~~-~~~~~ll~~-----~gI~v~~g-----------g-- 432 (459)
++++++++.+.|+ ++| +.+ ..+.+|+|+|+.+ +. ++.++|+++ +||.+.|| +
T Consensus 303 ~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~i 377 (409)
T 2gb3_A 303 YRERVETVLKKLE-EHG----LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEI 377 (409)
T ss_dssp HHHHHHHHHHHHH-HTT----CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEE
T ss_pred HHHHHHHHHHHHH-HcC----ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEE
Confidence 9999999999999 776 566 6788899988754 33 456677776 59999764 2
Q ss_pred cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 433 RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
||+++. +++++++++++|+++++++
T Consensus 378 Ris~~~-~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 378 RIACVL-EKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp EEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 999984 9999999999999998764
No 49
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=6.1e-42 Score=345.09 Aligned_cols=335 Identities=15% Similarity=0.178 Sum_probs=262.3
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc----CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (459)
++++|+|++|.| .++. ++.|.+++.+.+.. .....|++..|.++||+++++++.. +..+++++|++ |
T Consensus 55 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t 125 (432)
T 3ei9_A 55 DAQVISLGIGDT----TEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--S 125 (432)
T ss_dssp TCCCEECSSCCC----CSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--E
T ss_pred CCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--C
Confidence 458999999987 4443 88999999888752 1235788889999999999999863 45566899999 9
Q ss_pred ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC------------CeeeeeeecCCCCCCCHHHHHHHHHc
Q 012628 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYDPKTVGLDFEGMIADIKA 225 (459)
Q Consensus 158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~------------~v~~v~~~~~~~~~~d~e~l~~~i~~ 225 (459)
+|+++++.++ ...+.+||+|++++|+|.+|...++..|. +++.+|++++.++..|++. .
T Consensus 126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~- 196 (432)
T 3ei9_A 126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V- 196 (432)
T ss_dssp SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C-
T ss_pred CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C-
Confidence 9999999875 34578999999999999999998887774 7888888644455566543 1
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012628 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (459)
Q Consensus 226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (459)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....+++++++||||.
T Consensus 197 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~ 271 (432)
T 3ei9_A 197 --GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFSNY 271 (432)
T ss_dssp --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESHHH
T ss_pred --CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecchhc
Confidence 2566777789999999999999999999999999999999999999877532 12222222223578999999999
Q ss_pred cccCCCCcceEEEEeCChhH--------HHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012628 306 LGLYAERIGAMNVVCSSSDL--------AARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 377 (459)
||++|+|+||+++ +++. .+.+.. .....+.+++.++|.++..++.+... +.+++++++++
T Consensus 272 ~g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~ 339 (432)
T 3ei9_A 272 AGFTGVRLGWTVI---PKKLLYSDGFPVAKDFNR----IICTCFNGASNISQAGALACLTPEGL-----EAMHKVIGFYK 339 (432)
T ss_dssp HCTTTTCCEEEEC---CTTCBCTTSCBHHHHHHH----HHHHSCCCSCHHHHHHHHHHSSHHHH-----HHHHHHHHHHH
T ss_pred cCCcccceEEEEE---ChHHhhcchHHHHHHHHH----HhccccCCCCHHHHHHHHHHHhcccH-----HHHHHHHHHHH
Confidence 9999999999855 5553 333332 22233456788888888888764322 34688899999
Q ss_pred HHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhh
Q 012628 378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAK 443 (459)
Q Consensus 378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~ 443 (459)
++++++.+.|+ ++| +++..+.+++|+|+.+. .+++..+++++||.+.|| + |||++. ++++
T Consensus 340 ~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~ 413 (432)
T 3ei9_A 340 ENTNIIIDTFT-SLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HREN 413 (432)
T ss_dssp HHHHHHHHHHH-HTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHH
T ss_pred HHHHHHHHHHH-HCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHH
Confidence 99999999999 876 57777778899998662 356788888789999886 2 999977 9999
Q ss_pred HHHHHHHHHHHHhh
Q 012628 444 CEYLADAIIDSYHN 457 (459)
Q Consensus 444 i~~~~~~l~~~~~~ 457 (459)
+++++++|++--+.
T Consensus 414 l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 414 ILEACRRFKQLYKH 427 (432)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887654
No 50
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=3.7e-41 Score=336.53 Aligned_cols=364 Identities=18% Similarity=0.224 Sum_probs=276.6
Q ss_pred CCCCccchhHHHhhh--CCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHh
Q 012628 65 APPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLF 140 (459)
Q Consensus 65 ~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~ 140 (459)
..++++..+.+.... ..+.++|||+.|.| +..+++ ++.+.+++.+.++.. ... |++..|..++|+++++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~-~~~~~~--~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~ 89 (407)
T 2zc0_A 14 IKGSALADVMKKASELQKKGVKLISLAAGDP-DPELIP--RAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLK 89 (407)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCCCEECCSCCC-CTTTSC--HHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhhcccCCCCceEeCCCCCC-CchhCC--HHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHH
Confidence 344555555544331 22337899999987 333333 688999988887542 125 8888899999999999986
Q ss_pred cCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012628 141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 141 ~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~ 220 (459)
..+|..+++++|++ |+|++++++++.+. .+.+||+|+++.|+|..+...++..|++++.+|+++ + ++|++.++
T Consensus 90 ~~~g~~~~~~~v~~--t~g~t~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~ 162 (407)
T 2zc0_A 90 KYDHLEVSPENIVI--TIGGTGALDLLGRV--LIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-D--GMRVDLLE 162 (407)
T ss_dssp HHSCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHH
T ss_pred HhcCCCCCcceEEE--ecCHHHHHHHHHHH--hcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-C--CCCHHHHH
Confidence 65666666889999 99999999998443 367999999999999999999999999999999853 2 49999999
Q ss_pred HHHH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012628 221 ADIK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (459)
Q Consensus 221 ~~i~----~~~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (459)
++++ +. ++++++ ++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+ +..++
T Consensus 163 ~~l~~~~~~~-~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~ 238 (407)
T 2zc0_A 163 EKIKELKAKG-QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGR 238 (407)
T ss_dssp HHHHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCC
T ss_pred HHHHhhhccc-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCC
Confidence 9997 42 245665 6899999999999999999999999999999999999999876431 11122122 23357
Q ss_pred EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHH-HHHHHHHH
Q 012628 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK-AEMEMMAG 374 (459)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~ 374 (459)
+++++||||.++ +|+|+||+++ +++..+.+.. .......+++.++|.++..+|++..+ . +++++.++
T Consensus 239 ~i~~~s~sK~~~-~G~r~G~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~ 306 (407)
T 2zc0_A 239 VIVAGTLSKVLG-TGFRIGWIIA---EGEILKKVLM----QKQPIDFCAPAISQYIALEYLKRGYF----EKYHLEGALL 306 (407)
T ss_dssp EEEEEESTTTTC-TTSCCEEEEC---CHHHHHHHHH----HHTTTTSSSCHHHHHHHHHHHHTTHH----HHHTTTTHHH
T ss_pred EEEEcccccccC-CCcceEEEec---CHHHHHHHHH----HHHhhcCCCCHHHHHHHHHHHHcCCc----hHHHHHHHHH
Confidence 899999999999 9999999965 7775444433 32233335678888888888876422 3 44678889
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCC----------C--cEEEc
Q 012628 375 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLA 437 (459)
Q Consensus 375 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~ 437 (459)
+++++++++.+.|+ +.. |+ +.+..+.+|+|+|+.+ +. ++.+.|++++||.+.+| + ||+++
T Consensus 307 ~~~~~~~~l~~~L~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~ 383 (407)
T 2zc0_A 307 GYKEKRDIMLKALE-NHL-PN-AEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFS 383 (407)
T ss_dssp HHHHHHHHHHHHHH-HHC-TT-SCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECS
T ss_pred HHHHHHHHHHHHHH-HhC-CC-CEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeC
Confidence 99999999999998 641 11 5666778888988755 33 45667777669999875 2 99998
Q ss_pred cCChhhHHHHHHHHHHHHhhc
Q 012628 438 GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 ~~~~e~i~~~~~~l~~~~~~~ 458 (459)
..+++++++++++|+++++++
T Consensus 384 ~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 384 RPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp SSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 767899999999999998764
No 51
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.6e-42 Score=346.08 Aligned_cols=362 Identities=14% Similarity=0.157 Sum_probs=276.4
Q ss_pred CCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCC
Q 012628 66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGAD 143 (459)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~ 143 (459)
+++++.++.+.. ..+++|||+.|.| +..+++ ++.+.+++.+.++.. ....|++..|.+++|+++++++...+
T Consensus 29 ~~~~~~~~~~~~---~~~~~idl~~g~~-~~~~~~--~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~ 102 (425)
T 1vp4_A 29 KSSIIREILKFA---ADKDAISFGGGVP-DPETFP--RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMY 102 (425)
T ss_dssp CCCCHHHHTTTT---TSTTCEECCCCSC-CGGGSC--HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhc---cCCCceeCCCCCC-CcccCC--HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhcc
Confidence 444454443322 2468999999987 332322 788999998887542 12578888899999999999986544
Q ss_pred CCc-cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012628 144 NSV-LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 144 ~~~-~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
|.. +++++|++ |+|++++++++.. ..+.+||+|++++|+|..+...++..|++++.+|+++ + ++|++.++++
T Consensus 103 g~~~~~~~~v~~--t~G~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~~~ 175 (425)
T 1vp4_A 103 GITGLDEDNLIF--TVGSQQALDLIGK--LFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-D--GMDLNVLERK 175 (425)
T ss_dssp CCCSCCGGGEEE--EEHHHHHHHHHHH--HHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHHHH
T ss_pred CCCCCCcccEEE--eccHHHHHHHHHH--HhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHHHH
Confidence 555 56889999 9999999999843 3367999999999999999999999999999999863 2 4999999999
Q ss_pred HHcC-----CCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012628 223 IKAA-----PGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296 (459)
Q Consensus 223 i~~~-----~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (459)
+++. ..+++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ +..+++
T Consensus 176 l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~ 252 (425)
T 1vp4_A 176 LSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-GGPERV 252 (425)
T ss_dssp HHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-HCTTTE
T ss_pred HHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHh-CCCCCE
Confidence 8741 1145665 5899999999999999999999999999999999999999887532 11233332 344678
Q ss_pred EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012628 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 376 (459)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 376 (459)
+++.||||.|+ +|+|+||+++ +++.++.+..... ....+++.++|.++..+|++..+ .+++++.++++
T Consensus 253 i~~~s~sK~~~-~G~r~G~~~~---~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~ 320 (425)
T 1vp4_A 253 VLLNTFSKVLA-PGLRIGMVAG---SKEFIRKIVQAKQ----SADLCSPAITHRLAARYLERYDL----LEQLKPTIELY 320 (425)
T ss_dssp EEEEESTTTTC-GGGCEEEEEC---CHHHHHHHHHHHH----HHHSSCCHHHHHHHHHHHHHSCH----HHHTHHHHHHH
T ss_pred EEEeccccccc-cccceEEEee---CHHHHHHHHHHhh----hhcCCCCHHHHHHHHHHHhcCCH----HHHHHHHHHHH
Confidence 99999999999 9999999965 7775555543222 22235677888888877765322 34578889999
Q ss_pred HHHHHHHHHHHhhccCCCC--CcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC----------C--cEEEc
Q 012628 377 KNVRQKLFDSLSAKDKSGK--DWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----------G--RISLA 437 (459)
Q Consensus 377 ~~~~~~l~~~L~~~~g~~~--~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----------g--Ris~~ 437 (459)
+++++++.+.|+ +. .|. ++.+..+.+|+|+|+.+. .++++.|+++ ||.+.|| + |||++
T Consensus 321 ~~~~~~l~~~L~-~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~ 397 (425)
T 1vp4_A 321 RRKRTVMLNALE-EY-FSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFC 397 (425)
T ss_dssp HHHHHHHHHHHH-HH-STTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECS
T ss_pred HHHHHHHHHHHH-Hh-CCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeC
Confidence 999999999998 75 111 267777888999987552 3457777776 9999874 2 99998
Q ss_pred cCChhhHHHHHHHHHHHHhhc
Q 012628 438 GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 ~~~~e~i~~~~~~l~~~~~~~ 458 (459)
..+++++++++++|+++++++
T Consensus 398 ~~~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 398 LPPDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 767899999999999988753
No 52
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=5.2e-42 Score=345.08 Aligned_cols=349 Identities=14% Similarity=0.108 Sum_probs=261.8
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHH--HHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAE--NLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~--~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (459)
.+.+|||+.|.| +...+| .++.+.+++ .+.+... ...+|++..|.++||++|++++. +++++|++ |
T Consensus 32 ~~~~i~~~~G~p-~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~--t 101 (427)
T 3ppl_A 32 KNLKLDLTRGKP-SSEQLD-FADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLA--G 101 (427)
T ss_dssp TCCCEECCCCSC-CHHHHH-TTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEE--C
T ss_pred CCceEecCCCCC-ChHHCC-CcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEE--e
Confidence 357899999998 221111 133566666 5544321 24789999999999999999983 34789999 9
Q ss_pred ccchhHH--HHHHHHHHHhC--C----------CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012628 158 LSGTGSL--RLAAALIERYF--P----------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (459)
Q Consensus 158 ~ggt~a~--~l~~~~~~~~~--~----------gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i 223 (459)
+|+++++ +++...+ +. | ||+|++++|+|..|...++.+|++++.+|+++ + ++|++.+++++
T Consensus 102 ~G~~~al~~~~~~~~l--~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~-~--g~d~~~l~~~l 176 (427)
T 3ppl_A 102 DASSLNIMFDVISWSY--IFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNE-D--GPDMDAVEELV 176 (427)
T ss_dssp SSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEET-T--EECHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHH--hccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCC-C--CCCHHHHHHHH
Confidence 9999999 4663333 44 5 89999999999999999999999999999963 2 49999999999
Q ss_pred HcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCCCCCChhHHHHHH---hcCCeEEE
Q 012628 224 KAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TRGMELLV 298 (459)
Q Consensus 224 ~~~~~~~~~ii-~~~p~NPTG~~~s~~~l~~i~~l~-~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~---~~~~~~i~ 298 (459)
+. +++++++ +++||||||.+++.+++++|+++| ++||++||+||+|.++.+++......++..+. +..+++++
T Consensus 177 ~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (427)
T 3ppl_A 177 KN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA 254 (427)
T ss_dssp TS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEE
T ss_pred hc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEE
Confidence 53 3566666 558999999999999999999999 99999999999999976653211121222221 24578999
Q ss_pred EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
++||||. +++|+|+||+++ ++++++.+.. .......+++.+.|.++..+|.+.+ .|.+++++.++.+++
T Consensus 255 ~~S~SK~-~~~G~r~G~~~~---~~~l~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~ 323 (427)
T 3ppl_A 255 FTSTSKI-TLAGAGVSFFLT---SAENRKWYTG----HAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRKHAASLAP 323 (427)
T ss_dssp EEESTTT-SCTTSSCEEEEC---CHHHHHHHHH----HHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHHHHHHHHH
T ss_pred Eechhhc-cCcCccEEEEEc---CHHHHHHHHH----HhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHHHHHHHHH
Confidence 9999999 679999999865 7775544433 3333345788999999999998732 124567888888888
Q ss_pred HHHHHHHHHhhccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCCC--------------cEEEccCCh
Q 012628 379 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKDG--------------RISLAGLSL 441 (459)
Q Consensus 379 ~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~gg--------------Ris~~~~~~ 441 (459)
+++.+.+.|.+.++.-+.+.+..|++|+|+|+.+. .+.+..+++++||.++||| |||++..++
T Consensus 324 ~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~ 403 (427)
T 3ppl_A 324 KFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPV 403 (427)
T ss_dssp HHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCH
T ss_pred HHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCH
Confidence 88888888862221001256677889999998663 4444555566799999831 999987788
Q ss_pred hhHHHHHHHHHHHHhhc
Q 012628 442 AKCEYLADAIIDSYHNV 458 (459)
Q Consensus 442 e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++|.++++++
T Consensus 404 ~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 404 EELEVAMDGVATCVLLA 420 (427)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 53
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.5e-41 Score=337.20 Aligned_cols=341 Identities=12% Similarity=0.079 Sum_probs=268.7
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
++++|+|+.|.+ ..++ ++.+.+++.+.+.... +.|++ +..++++++++++...++..+++++|++ |+|++
T Consensus 31 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~~ 100 (391)
T 4dq6_A 31 TNDLLPMWVADM----DFKA-APCIIDSLKNRLEQEI-YGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGVI 100 (391)
T ss_dssp CSCSEECCSSSC----SSCC-CHHHHHHHHHHHTTCC-CCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCceeccccCC----CCCC-CHHHHHHHHHHHhCCC-CCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCChH
Confidence 468999999976 4443 8999999999886543 56754 5689999999998877776677899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee--cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY--DPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~--~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~ 239 (459)
++++++.+ ..+.+||+|+++.|+|..+...++..|++++.+|++ ++.++.+|++++++++++ ++++++++||
T Consensus 101 ~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~v~i~~p~ 174 (391)
T 4dq6_A 101 PAISLLIN--ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD----VKLFILCNPH 174 (391)
T ss_dssp HHHHHHHH--HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT----EEEEEEESSB
T ss_pred HHHHHHHH--HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc----CCEEEEECCC
Confidence 99999843 346799999999999999999999999999999986 345577999999999874 7788889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+. +..++++++.||||.+|++|+|+||++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~- 251 (391)
T 4dq6_A 175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK--HIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV- 251 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE-
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCC--ccCHHHcCccccCcEEEEEechhhccCcccceEEEE-
Confidence 99999999999999999999999999999999998875321 11221111 113578999999999999999999994
Q ss_pred EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCc
Q 012628 319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDW 397 (459)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~ 397 (459)
+++++..+.+...... ..+.+++.+++.++...|.+. .+.+++.+++++++++++.+.|+ + ++ ++
T Consensus 252 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~ 317 (391)
T 4dq6_A 252 -LPDEKDYKLLDDAFTR---IDIKRNNCFSLVATEASYNNG------ESWLESFLEYLESNIDFAIKYIN-ENMP---KL 317 (391)
T ss_dssp -CCSHHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT---TS
T ss_pred -eCCHHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHhch------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CC
Confidence 4445755555443222 223467777777776666532 23367888999999999999998 7 42 26
Q ss_pred ccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHh
Q 012628 398 SFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 398 ~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~ 456 (459)
.+..+++++++|+.+ +. ++.++|++++||.+.|| + ||+++. +++++++++++|+++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 318 KVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNAIN 391 (391)
T ss_dssp EECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHHHC
T ss_pred EecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 788899999987644 33 45667777669999875 2 999996 89999999999998763
No 54
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=1.1e-41 Score=337.50 Aligned_cols=333 Identities=17% Similarity=0.142 Sum_probs=263.2
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
++.|||+.|.| ..+ .++.+.+++.+.+.. ...|++..|.+++|+++++++... +++|++ |+||++
T Consensus 25 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~~~~------~~~v~~--~~g~~~ 89 (381)
T 1v2d_A 25 LGAVNLGQGFP----SNP-PPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFAVE------PESVVV--TSGATE 89 (381)
T ss_dssp HTCEECCCCSC----SSC-CCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHTSC------GGGEEE--ESSHHH
T ss_pred CCeEEecCCCC----CCC-CCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhcCCC------hhhEEE--cCChHH
Confidence 46899999987 333 378999999988865 367988889999999999996432 678999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec-CCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
+++++.+. .+.+||+|++++|+|..+...++..|++++.+|++. ++++.+|++.+++++++ +++++++++||||
T Consensus 90 a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~np 164 (381)
T 1v2d_A 90 ALYVLLQS--LVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP---RTRALLLNTPMNP 164 (381)
T ss_dssp HHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT---TEEEEEEESSCTT
T ss_pred HHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCc---CCEEEEECCCCCC
Confidence 99998443 367999999999999999999999999999999851 13478999999998864 6788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++++|+++|++||+++|+||+|.++.++. ...++..+ ..++++++.|+||.+|++|+|+||+++
T Consensus 165 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~---~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~--- 236 (381)
T 1v2d_A 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE---RPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVG--- 236 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEEC---
T ss_pred CCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEe---
Confidence 9999999999999999999999999999999887631 11122222 446899999999999999999999965
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 401 (459)
+++.++.+..... ....+++.++|.++...|+... +.+++++.+++++++++++.+.|+ +.| +++..
T Consensus 237 ~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~ 303 (381)
T 1v2d_A 237 PKEFMPRLAGMRQ----WTSFSAPTPLQAGVAEALKLAR----REGFYEALREGYRRRRDLLAGGLR-AMG----LRVYV 303 (381)
T ss_dssp CTTTHHHHHHHHH----HHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHH-HTT----CCEEC
T ss_pred CHHHHHHHHHHHh----hcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHHHHHHHHHH-HCC----CEecC
Confidence 7775555543221 2233566777777766665321 123467889999999999999999 776 57777
Q ss_pred CCcceeeecCCCH-HHHHHHHhcccEEEcCC----------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 402 RQIGMFSFTGLNK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 402 ~~~g~f~~~~l~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+++|+|+|+.+.. + +.++++++||.+.+| + ||+++. +++++++++++|.+++++.
T Consensus 304 ~~~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 304 PEGTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp CSBSSEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC---
T ss_pred CCcceEEEEecChHh-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 8888998886532 3 666777789999874 2 999998 9999999999999988754
No 55
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=2.6e-41 Score=336.78 Aligned_cols=344 Identities=12% Similarity=0.103 Sum_probs=267.4
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
+++|+|+.|.+ +.+ .++.+.+++.+.+... ...|++. ..++|+++++++...+|..+++++|++ |+|+++
T Consensus 31 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~~ 100 (399)
T 1c7n_A 31 NEVVPLSVADM----EFK-NPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVVP 100 (399)
T ss_dssp TTCCCCCSSSC----SSC-CCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHHH
T ss_pred CCceeeeecCC----CCC-CCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHHH
Confidence 47899999986 344 3789999999888653 3678654 899999999998765565566889999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
+++++.+ ..+.+||+|+++.|+|..+...++..|++++.+|+++++ ++.+|++.++++++. ++++++++++||||
T Consensus 101 a~~~~~~--~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 176 (399)
T 1c7n_A 101 AVFNAVR--EFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNP 176 (399)
T ss_dssp HHHHHHH--HHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTT
T ss_pred HHHHHHH--HhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCC
Confidence 9999844 336789999999999999999999999999999985222 456999999999974 26788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..++++++.||||.+|++|+|+||++ +
T Consensus 177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~ 252 (399)
T 1c7n_A 177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII--I 252 (399)
T ss_dssp TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE--C
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEEE--E
Confidence 99999999999999999999999999999999887532 1112211111 13578999999999999999999994 4
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSF 399 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~ 399 (459)
++++.++.+...... ..+.+++.++|.++..+|++. .+.+++.+++++++++++.+.|+ + ++ ++.+
T Consensus 253 ~~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~ 319 (399)
T 1c7n_A 253 KNPDIRERFTKSRDA---TSGMPFTTLGYKACEICYKEC------GKWLDGCIKVIDKNQRIVKDFFE-VNHP---EIKA 319 (399)
T ss_dssp CCHHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCT---TSBC
T ss_pred CCHHHHHHHHHHHhh---cccCCCCHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hhCC---CCeE
Confidence 446655555443221 223356778888777666532 23467888999999999999998 7 52 1677
Q ss_pred ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 400 ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 400 ~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
..+++++++|+.+ +. ++.+.|++++||.+.|| + ||+++. +++++++++++|.++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 320 PLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDL 393 (399)
T ss_dssp CCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHH
Confidence 7888899888644 33 45667765679999875 2 999998 6899999999999998764
No 56
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=2.7e-41 Score=339.37 Aligned_cols=356 Identities=16% Similarity=0.100 Sum_probs=263.3
Q ss_pred cchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHh--hcC-CCCCCCCCcccHHHHHHHHHHHhcCCCCc
Q 012628 70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERG-ENKEYLPIEGLAAFNKVTAELLFGADNSV 146 (459)
Q Consensus 70 i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~-~~~~Y~~~~g~~~lr~aia~~l~~~~~~~ 146 (459)
+......+.+. ..+|+|+.|.| +...+++ ++.+.+++.+.+ ... ...+|++..|.++||+++++++.
T Consensus 21 ~~~~~~~l~~~--~~~i~l~~g~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------ 90 (422)
T 3d6k_A 21 VTAKYAELKAK--NLSLDLTRGKP-SAEQLDL-SNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------ 90 (422)
T ss_dssp HHHHHHHHHHT--TCCEECCCCSC-CHHHHHT-TGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------
T ss_pred HHHHHHHHhcc--CCeEeCCCCCC-ChhhCCC-cHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------
Confidence 33334444443 35899999998 2111343 567777766542 121 24689999999999999999983
Q ss_pred cccCceEEeecccchhHH--HHHHHHHHHhCC------------CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCC
Q 012628 147 LKEQRVATVQGLSGTGSL--RLAAALIERYFP------------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV 212 (459)
Q Consensus 147 ~~~~~i~~~~t~ggt~a~--~l~~~~~~~~~~------------gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~ 212 (459)
+++++|++ |+|+++++ .++...+ ..+ +|+|++++|+|..|...++..|++++.+|+++ +
T Consensus 91 ~~~~~i~~--t~G~~~al~l~~~~~~l--~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~-- 163 (422)
T 3d6k_A 91 LPADLVVA--QDGSSLNIMFDLISWSY--TWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTD-E-- 163 (422)
T ss_dssp CCGGGEEE--CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-T--
T ss_pred CChhHEEE--ecchHHHHHHHHHHHHh--cCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCC-C--
Confidence 34789999 99999997 5553332 234 34799999999999999999999999999963 2
Q ss_pred CCCHHHHHHHHHcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCC--CCCCCCCCChhHHHH
Q 012628 213 GLDFEGMIADIKAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQG--FASGSLDNDASSVRL 288 (459)
Q Consensus 213 ~~d~e~l~~~i~~~~~~~~~ii-~~~p~NPTG~~~s~~~l~~i~~l~~-~~~~~ii~Deay~~--~~~~~~~~~~~~~~~ 288 (459)
++|++.+++++++ .++++++ +++||||||.+++.+++++|+++|+ +||++||+||+|.. +.+++ ....++..
T Consensus 164 g~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~ 239 (422)
T 3d6k_A 164 GPDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIE 239 (422)
T ss_dssp EECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHH
T ss_pred CCCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhh
Confidence 4999999999974 2566666 7999999999999999999999999 99999999999986 44321 11223322
Q ss_pred H---HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHH
Q 012628 289 F---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW 365 (459)
Q Consensus 289 ~---~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 365 (459)
+ .+..+++++++||||. +++|+|+||+++ ++++++.+.. .......+++.++|.++..+|++.+ .|
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~---~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~~l~~~~---~~ 308 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFFAS---SKENIEWYAS----HANVRGIGPNKLNQLAHAQFFGDVA---GL 308 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTT-SCTTSSCEEEEC---CHHHHHHHHH----HHHHHCSCCCHHHHHHHHHHHCSHH---HH
T ss_pred HhhccCCCCcEEEEcChhhh-cCcccceEEEEe---CHHHHHHHHH----HHHhhcCCCCHHHHHHHHHHHhCcc---hH
Confidence 2 2345689999999999 679999999966 7775555443 3223344678899999999998732 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC----------
Q 012628 366 KAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD---------- 431 (459)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g---------- 431 (459)
.+++++.++.++++++.+.+.|. +. +--+.+.+..|++|+|+|+.+. .+.+..+++++||.+.||
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~L~-~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~ 387 (422)
T 3d6k_A 309 KAHMLKHAASLAPKFERVLEILD-SRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDP 387 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCC
Confidence 56678889999999998888887 42 1001145567889999998653 555566666789999883
Q ss_pred --C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 432 --G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 --g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+ |||++..+++++++++++|+++++++
T Consensus 388 ~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 388 NNENIRLAPSLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 99998558999999999999988763
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=2.7e-40 Score=324.01 Aligned_cols=326 Identities=17% Similarity=0.206 Sum_probs=262.3
Q ss_pred CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
.++++|+|+.|.+ ..+ .++.+.+++.+.+.. ...| |..+.+++|+++++++.. ++++|++ |+|+
T Consensus 14 ~~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~ 77 (354)
T 3ly1_A 14 STDNPIRINFNEN----PLG-MSPKAQAAARDAVVK--ANRY-AKNEILMLGNKLAAHHQV------EAPSILL--TAGS 77 (354)
T ss_dssp CSSSCEECSSCCC----SSC-CCHHHHHHHHHTGGG--TTSC-CHHHHHHHHHHHHHHTTS------CGGGEEE--ESHH
T ss_pred CCCceEEccCCCC----CCC-CCHHHHHHHHHHHhh--CcCC-CCCchHHHHHHHHHHhCC------ChHHEEE--eCCh
Confidence 3568999999986 444 389999999998864 3677 667899999999999742 3789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++++++.+ ..+.+||+|+++.|+|..+...++..|++++.+|++ .++++|++.+++++++. ++++++++++|||
T Consensus 78 ~~a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~n 152 (354)
T 3ly1_A 78 SEGIRAAIE--AYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVAAY-SGPSIVYLVNPNN 152 (354)
T ss_dssp HHHHHHHHH--HHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHHHTC-SSCEEEEEESSCT
T ss_pred HHHHHHHHH--HHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhccC-CCCCEEEEeCCCC
Confidence 999999843 336799999999999999999999999999999984 35899999999999831 2678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC-CeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG-MELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
|||.+++.+++++|+++| +||+++|+||+|.++.+++. ..+........ +++++++||||.+|++|+|+||+++
T Consensus 153 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~- 227 (354)
T 3ly1_A 153 PTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR---FRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA- 227 (354)
T ss_dssp TTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT---CCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC-
T ss_pred CcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc---cCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec-
Confidence 999999999999999999 89999999999998886532 11222333444 7899999999999999999999865
Q ss_pred eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012628 320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF 399 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 399 (459)
+++ +.+.+...... .+++.+++.++...|++. +.+++.+++++++++++.+.|+ ++| +.+
T Consensus 228 --~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~----~~~ 287 (354)
T 3ly1_A 228 --HPT----VIALMGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALE-DLK----LPY 287 (354)
T ss_dssp --CHH----HHHHHGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHH-HHT----CCB
T ss_pred --CHH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-HCC----CeE
Confidence 777 45555544433 377888888888888865 2367888999999999999999 876 466
Q ss_pred ccCCcceeeecCC--CHH-HHHHHHhcccEEEcCC------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 400 ILRQIGMFSFTGL--NKA-QSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 400 ~~~~~g~f~~~~l--~~~-~~~~ll~~~gI~v~~g------g--Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
.++ .|.|+|+.+ +.+ +.+.|.+ +||.+. | + |||++ +++++++++++|++++++
T Consensus 288 ~~~-~~~~~~~~~~~~~~~~~~~l~~-~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 288 LPS-EGNFVFHQLVVPLKDYQTHMAD-AGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCC-CSSEEEEECSSCHHHHHHHHHH-TTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred CCC-CceEEEEECCCCHHHHHHHHHH-CCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 555 456788766 344 4555555 699988 3 2 99987 789999999999999875
No 58
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=6.7e-41 Score=336.38 Aligned_cols=344 Identities=14% Similarity=0.073 Sum_probs=272.2
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+++.|+|++|.+ .++ .+|.|.+++.+.++... +.|.+. ..++++++++++...++..+++++|++ |+|++
T Consensus 60 g~~~i~~~~~~~----~~~-~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~~ 129 (421)
T 3l8a_A 60 NPELLQMWVADM----DFL-PVPEIKEAIINYGREHI-FGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILF--IDGVV 129 (421)
T ss_dssp CTTCEECCSSCC----CSC-CCHHHHHHHHHHHHHCC-SSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCeeecccCCC----CCC-CCHHHHHHHHHHHhcCC-cCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--cCCHH
Confidence 468999999976 444 38999999998886543 667654 379999999999887777777899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
++++++.+. .+.+||+|+++.|+|..+...++..|.+++.+|+. .+.++.+|++.+++++++ ++++++++++|||
T Consensus 130 ea~~~a~~~--~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~n 205 (421)
T 3l8a_A 130 PAISIALQA--FSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHN 205 (421)
T ss_dssp HHHHHHHHH--HSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBT
T ss_pred HHHHHHHHH--hcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCC
Confidence 999998444 36799999999999999999999999999999986 455677999999999984 2788889999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
|||.+++++++++|+++|++||+++|+||+|.++.+.+.. ..++..+. +..++++++.|+||.+|++|+|+||+++
T Consensus 206 ptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~- 282 (421)
T 3l8a_A 206 PGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT--HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAII- 282 (421)
T ss_dssp TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEEC-
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CccHHHcCchhcCcEEEEEeChhhccCchhheEeEEc-
Confidence 9999999999999999999999999999999999875421 11221111 1235789999999999999999999954
Q ss_pred eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012628 320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF 399 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 399 (459)
+++++.+.+...... ..+.+++.+++.++...++.. .+.+++.+++++++++++.+.|+ +++ ++.+
T Consensus 283 -~~~~l~~~~~~~~~~---~~~~~~n~~~~~a~~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~---~i~~ 348 (421)
T 3l8a_A 283 -QNESLRRKFQYRQLA---NNQHEVPTVGMIATQAAFQYG------KPWLEELKTVIEGNIKLVIKELE-AKT---KIKV 348 (421)
T ss_dssp -CSHHHHHHHHHHHHH---TTCSCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHC---SCEE
T ss_pred -CCHHHHHHHHHHHHh---cccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hCC---CceE
Confidence 447755555443322 234467777777776666532 23367888999999999999999 762 2688
Q ss_pred ccCCcceeeecCC-----C-HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 400 ILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 400 ~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
..++++++.|+.+ + .++.+.|++++||.+.+| + ||+++. +++++++++++|.+++++
T Consensus 349 ~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~ 421 (421)
T 3l8a_A 349 MEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFGK 421 (421)
T ss_dssp ECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC--
T ss_pred eCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhC
Confidence 8899999988754 2 356778877789999875 2 999997 999999999999998753
No 59
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=1.1e-40 Score=334.99 Aligned_cols=348 Identities=14% Similarity=0.085 Sum_probs=261.4
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHH--HHhhcC-CCCCC-CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAEN--LMLERG-ENKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~--~~~~~~-~~~~Y-~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (459)
.++|||+.|.| +...+| .++.+.+++. +.+..+ ....| .+..|.++||+++++++. +++++|++ |+
T Consensus 25 ~~~i~l~~g~p-~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~ 94 (423)
T 3ez1_A 25 GLNLNMQRGQP-ADADFD-LSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLV--WN 94 (423)
T ss_dssp TCCEESCCCCC-CHHHHH-TTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEE--CS
T ss_pred CceEecCCCCC-ChHhCC-CcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEE--eC
Confidence 47899999998 211133 3667888775 544322 23689 888999999999999973 33789999 99
Q ss_pred cchhHHH--HHHHHHHHhC--C---------CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012628 159 SGTGSLR--LAAALIERYF--P---------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA 225 (459)
Q Consensus 159 ggt~a~~--l~~~~~~~~~--~---------gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~ 225 (459)
|++++++ ++. ...+. + ||+|++++|+|..|...++..|++++.+|++++ ++|++.++++++.
T Consensus 95 G~~~al~~~~~~--~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~ 169 (423)
T 3ez1_A 95 NSSLELQGLVLT--FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGT 169 (423)
T ss_dssp SCHHHHHHHHHH--HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHS
T ss_pred CcHHHHHHHHHH--HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhh
Confidence 9999997 663 33355 7 599999999999999999999999999999632 5999999999963
Q ss_pred CCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCC-CCCChhHHHHH---HhcCCeEEEE
Q 012628 226 APGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGS-LDNDASSVRLF---ATRGMELLVA 299 (459)
Q Consensus 226 ~~~~~~~ii-~~~p~NPTG~~~s~~~l~~i~~l~-~~~~~~ii~Deay~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~ 299 (459)
. +++++++ +++||||||.+++.+++++|+++| ++||+++|+||+|..+.+.+ ......++..+ .+..++++++
T Consensus 170 ~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 170 D-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp C-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred C-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 1 3666665 679999999999999999999999 99999999999999655432 11111122222 2355789999
Q ss_pred EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN--PALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~~~~~~~~~~~ 377 (459)
+||||. +++|+|+||+++ +++.++.+. ........+++.++|.++..+|.+ ..+ .+++++.++.++
T Consensus 249 ~S~sK~-~~~G~r~G~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~~ 316 (423)
T 3ez1_A 249 ASTSKI-TFAGAGLGFVAS---SEDNIRWLS----KYLGAQSIGPNKVEQARHVKFLTEYPGGL----EGLMRDHAAIIA 316 (423)
T ss_dssp EESTTT-SCSSSSCEEEEE---CHHHHHHHH----HHHHHSCSCCCHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHH
T ss_pred eCchhh-ccCCcceEEEEe---CHHHHHHHH----HHHhhhccCCCHHHHHHHHHHHHhccchH----HHHHHHHHHHHH
Confidence 999999 569999999977 787554443 333334457888999988888875 333 455677788888
Q ss_pred HHHHHHHHHHhhccCCCC-CcccccCCcceeeecCC---CHHHHHHHHhcccEEEcC-C-----------C--cEEEccC
Q 012628 378 NVRQKLFDSLSAKDKSGK-DWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTK-D-----------G--RISLAGL 439 (459)
Q Consensus 378 ~~~~~l~~~L~~~~g~~~-~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~-g-----------g--Ris~~~~ 439 (459)
++++.+.+.|.+.++--+ .+.+..+++|+|+|+.+ +.+.+.++++++||.+.| | + |||++..
T Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~ 396 (423)
T 3ez1_A 317 PKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP 396 (423)
T ss_dssp HHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS
T ss_pred HHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC
Confidence 888887777762232100 14666788999999865 456666666678999998 2 1 9999866
Q ss_pred ChhhHHHHHHHHHHHHhhc
Q 012628 440 SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 440 ~~e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++++|.++++++
T Consensus 397 ~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 397 PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998764
No 60
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=3.1e-40 Score=328.89 Aligned_cols=354 Identities=16% Similarity=0.177 Sum_probs=269.7
Q ss_pred CCCccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCC
Q 012628 66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGAD 143 (459)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~ 143 (459)
.+.++..+..... ++++|||+.|.| +..+. .++.+.+++.+.++.. ....|++..|..++|+++++++.
T Consensus 18 ~~~~~~~~~~~~~---~~~~i~l~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g--- 88 (397)
T 2zyj_A 18 QASTIRELLKLTQ---RPGILSFAGGLP-APELF--PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG--- 88 (397)
T ss_dssp CCCHHHHHHHHHT---STTCEEESSCCC-CGGGC--CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT---
T ss_pred CchHHHHHHhhcc---CCCceecCCCCC-CchhC--CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC---
Confidence 3444544444332 457899999987 32222 2688999888877531 12578888899999999999983
Q ss_pred CCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012628 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (459)
Q Consensus 144 ~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i 223 (459)
+++++|++ |+|++++++++.+. .+.+||+|+++.|+|..+...++..|++++.+|+++ + ++|++++++++
T Consensus 89 ---~~~~~v~~--~~g~~~al~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~--~~d~~~l~~~l 158 (397)
T 2zyj_A 89 ---VRPEEVLI--TTGSQQALDLVGKV--FLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-E--GPDLDALEEVL 158 (397)
T ss_dssp ---SCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHHHHH
T ss_pred ---CChhhEEE--eccHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-C--CCCHHHHHHHH
Confidence 33789999 99999999998433 367999999999999999999999999999999853 2 49999999999
Q ss_pred HcCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEE
Q 012628 224 KAAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQ 300 (459)
Q Consensus 224 ~~~~~~~~~i-i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ 300 (459)
++. +++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .+++++++
T Consensus 159 ~~~--~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~ 234 (397)
T 2zyj_A 159 KRE--RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFELAREAGYPGVIYLG 234 (397)
T ss_dssp HHC--CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHHHHHHTCCCEEEEE
T ss_pred hhc--CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhhCcccCCCeEEEEe
Confidence 852 34454 6799999999999999999999999999999999999999887532 11223333222 16789999
Q ss_pred cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012628 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 380 (459)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 380 (459)
|+||.++ +|+|+||+++ +++.++.+..... ....+++.++|.++..+|++.. | +++++.++++++++
T Consensus 235 s~sK~~~-~G~r~G~~~~---~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~ 301 (397)
T 2zyj_A 235 SFSKVLS-PGLRVAFAVA---HPEALQKLVQAKQ----GADLHTPMLNQMLVHELLKEGF----S-ERLERVRRVYREKA 301 (397)
T ss_dssp ESTTTTC-GGGCCEEEEC---CHHHHHHHHHHHH----HHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHHHHHHHH
T ss_pred ccccccc-ccceeEEEec---CHHHHHHHHHHHH----hhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHHHHHHHH
Confidence 9999999 9999999965 7775555543222 2223557888888888888653 2 45788899999999
Q ss_pred HHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCC----------C--cEEEccCChhh
Q 012628 381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAK 443 (459)
Q Consensus 381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~e~ 443 (459)
+++.+.|+ +. +|.++.+..+.+|+|+|+.+ +. ++.++|+++ ||.+.+| + ||+++..++++
T Consensus 302 ~~l~~~L~-~~-~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~ 378 (397)
T 2zyj_A 302 QAMLHALD-RE-VPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREG 378 (397)
T ss_dssp HHHHHHHH-HH-SCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHH
T ss_pred HHHHHHHH-HH-CCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHH
Confidence 99999998 74 11125666778899998754 33 456677765 9999874 2 99998767999
Q ss_pred HHHHHHHHHHHHhhc
Q 012628 444 CEYLADAIIDSYHNV 458 (459)
Q Consensus 444 i~~~~~~l~~~~~~~ 458 (459)
+++++++|.++++++
T Consensus 379 i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 379 IAEGVRRLGRALKGL 393 (397)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988753
No 61
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.9e-40 Score=329.54 Aligned_cols=344 Identities=17% Similarity=0.094 Sum_probs=262.5
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHH-HHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAA-FNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~-lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+++|+|+.|.+ ..+ .++.+.+++.+.+... ...|++. ..+ +|+++++++...+|..+++++|++ |+|++
T Consensus 28 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~~ 97 (390)
T 1d2f_A 28 ADLLPFTISDM----DFA-TAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVI 97 (390)
T ss_dssp --CEECCSSSC----SSC-CCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHH
T ss_pred CCeeEeeecCC----CCC-CCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCHH
Confidence 47899999986 333 3889999999988653 3678664 678 999999998776776677899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
++++++.+ ..+.+||+|+++.|+|..+...++..|++++.+|++.++ ++.+|++.+++++++ .+++++++++|||
T Consensus 98 ~al~~~~~--~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~n 173 (390)
T 1d2f_A 98 YMVSELIR--QWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQN 173 (390)
T ss_dssp HHHHHHHH--HSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCT
T ss_pred HHHHHHHH--HhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCC
Confidence 99999843 335699999999999999999999999999999986432 456999999999974 2577888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ ....... +.||||.+|++|+|+||+++
T Consensus 174 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~d~-~~s~sK~~~~~G~r~G~~~~-- 247 (390)
T 1d2f_A 174 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNV-ARGDWAL-LTSGSKSFNIPALTGAYGII-- 247 (390)
T ss_dssp TTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGT-CCSSEEE-EECSHHHHTCGGGCCEEEEE--
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHc-chhhHhh-ccCccHhhcccChhheEEEE--
Confidence 999999999999999999999999999999999886531 11121111 1111133 89999999999999999954
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSF 399 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~ 399 (459)
++++..+.+...... ...+.+++.+++.++...|++. .+.+++.+++++++++++.+.|+ + ++ ++.+
T Consensus 248 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~---~~~~ 315 (390)
T 1d2f_A 248 ENSSSRDAYLSALKG--RDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMN-AAFP---ELNW 315 (390)
T ss_dssp CSHHHHHHHHHHHHT--TSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHCS---SCCC
T ss_pred CCHHHHHHHHHHHhh--hcccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-hhCC---CCEE
Confidence 446644444332210 1223366777777776666532 23367888999999999999998 7 52 1677
Q ss_pred ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhcC
Q 012628 400 ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNVS 459 (459)
Q Consensus 400 ~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~~ 459 (459)
..+++++++|+.+ +. ++.+.|++++||.+.|| + |||++. +++++++++++|.+++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~~~ 390 (390)
T 1d2f_A 316 QIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAVR 390 (390)
T ss_dssp CCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhhC
Confidence 7888889888643 33 45667775679999875 2 999998 78999999999999998753
No 62
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=1.5e-41 Score=350.26 Aligned_cols=342 Identities=13% Similarity=0.090 Sum_probs=265.0
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcC-CC-Cccc-cCceEEeeccc
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGA-DN-SVLK-EQRVATVQGLS 159 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~-~~-~~~~-~~~i~~~~t~g 159 (459)
++|+|+.|.| +.+ ++.+.+++.+.+.. ..|+ +..|.+++|+++++++... ++ ..+. +++|++ |+|
T Consensus 104 ~~i~l~~g~~----~~~--~~~~v~a~~~~~~~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~G 172 (533)
T 3f6t_A 104 DAVNYCHTEL----GLN--RDKVVAEWVNGAVA---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TEG 172 (533)
T ss_dssp HHHHHHHHTT----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EEH
T ss_pred hheeccCCCC----CcC--CcHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--ECC
Confidence 4789999998 444 45555555555543 3454 7889999999999998554 33 4444 478999 999
Q ss_pred chhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec--CCCCCCCHHHHHHHHHcCCCCcEEEE
Q 012628 160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAAPGGSFILL 234 (459)
Q Consensus 160 gt~a~~l~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~--~~~~~~d~e~l~~~i~~~~~~~~~ii 234 (459)
+++++.++...+. .+.+||+|++++|+|..|...++..|++++.+|++. ++++++|++.+++++++ ++++++
T Consensus 173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~---~~k~v~ 249 (533)
T 3f6t_A 173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP---SIKALI 249 (533)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT---TEEEEE
T ss_pred HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC---CCeEEE
Confidence 9999999844311 356999999999999999999999999999999854 45789999999999865 788888
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012628 235 HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (459)
Q Consensus 235 ~~~p~NPTG~~~s~~~l~~i~~l~~-~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (459)
+++||||||.+++.+++++|+++|+ +||+++|+||+|.++.++.. ++... ..+++++++||||.+|++|+|+
T Consensus 250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~~--~~~~~i~~~S~SK~~g~~G~Ri 322 (533)
T 3f6t_A 250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYSV--VPYNTMLVYSYSKLFGCTGWRL 322 (533)
T ss_dssp EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHHH--SGGGEEEEEESHHHHTCGGGCE
T ss_pred EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhhc--CCCCEEEEecCcccCCCcccce
Confidence 8899999999999999999999999 68999999999999886421 22222 2358999999999999999999
Q ss_pred ceEEEEeCChhHHHHHHHH--------------------------------HHhhccccccCCchHHHHH----HHHHhC
Q 012628 314 GAMNVVCSSSDLAARVKSQ--------------------------------LKRLARPMYSNPPVHGARI----VANVVG 357 (459)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~----~~~~L~ 357 (459)
||+++ ++++..+++++. +.......+.+++.+.|.+ +...|.
T Consensus 323 G~l~~--~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 323 GVIAL--NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred EEEEE--CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 99854 444344444332 2334444555777778777 344453
Q ss_pred -C---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC--------------------
Q 012628 358 -N---PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-------------------- 413 (459)
Q Consensus 358 -~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~-------------------- 413 (459)
+ +.+ .+++++++++++++++.+.+.|. ++ +.+..+++|+|+|+++.
T Consensus 401 ~~~g~~~~----~~~~~~~~~~~~~r~~~l~~~L~--~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 470 (533)
T 3f6t_A 401 TSTNGGSD----DPYIDIARKLVSERYDQLHDAMQ--AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE 470 (533)
T ss_dssp TCBGGGTB----CHHHHHHHHHHHHHHHHHHHHHT--CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred hhccccch----HHHHHHHHHHHHHHHHHHHHhcC--CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence 1 112 35678999999999999999985 44 57778899999997653
Q ss_pred -HHHHHHHHhcccEEEcCC-------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 414 -KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 414 -~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+++.++++++||.+.|| | |||++.++++++++++++|.++++++
T Consensus 471 ~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 471 QVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 256778888889999996 2 99999789999999999999998763
No 63
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=7.4e-40 Score=322.35 Aligned_cols=324 Identities=12% Similarity=0.066 Sum_probs=258.5
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
.+++|+|+.|++ ..+ .++.+.+++.+.+.. ...|++..+ .++|+++++++.. ++++|++ |+|++
T Consensus 29 ~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~~------~~~~v~~--~~g~~ 92 (365)
T 3get_A 29 VKEVIKLASNEN----PFG-TPPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKYKV------QNENIII--GAGSD 92 (365)
T ss_dssp CSCCEECSSCCC----TTC-SCHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHHTC------CGGGEEE--ESSHH
T ss_pred CCceEEecCCCC----CCC-CCHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHhCC------CcceEEE--CCCHH
Confidence 368999999986 344 389999999998864 367866666 8999999999742 3789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++++++. ...+.+||+|+++.|+|..+...++..|++++.+|+ +++++ +|++++++++++ +++++++++||||
T Consensus 93 ~a~~~~~--~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~---~~~~v~~~~p~np 165 (365)
T 3get_A 93 QVIEFAI--HSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKD---EIKLIFLCLPNNP 165 (365)
T ss_dssp HHHHHHH--HHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTT---TEEEEEEESSCTT
T ss_pred HHHHHHH--HHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCC---CCCEEEEcCCCCC
Confidence 9999984 334679999999999999999999999999999998 34567 999999999975 7888889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
||.+++.+++++|+++| ++|+++|+||+|.++.+ .+. ...+.....+..+++++++||||.+|++|+|+||+++
T Consensus 166 tG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~- 241 (365)
T 3get_A 166 LGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA- 241 (365)
T ss_dssp TCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-
T ss_pred CCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-
Confidence 99999999999999999 57999999999998773 211 1112223345567899999999999999999999966
Q ss_pred eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012628 320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF 399 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 399 (459)
+++..+.+ ...... + +++.++|.++..+|++. +++++.+++++++++++.+.|+ ++| +++
T Consensus 242 --~~~~~~~~----~~~~~~-~-~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~g----~~~ 301 (365)
T 3get_A 242 --NANIISAF----YKLRAP-F-NVSNLALKAAVAAMDDD-------EFTEKTLENNFSQMELYKEFAK-KHN----IKI 301 (365)
T ss_dssp --CHHHHHHH----HHHSCT-T-CSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHH-HTT----CEE
T ss_pred --CHHHHHHH----HHhcCC-C-CcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC----CEE
Confidence 88844443 333222 2 57888888888888864 3367889999999999999999 876 566
Q ss_pred ccCCcceeeecCC---CHH-HHHHHHhcccEEEcCCC-------cEEEccCChhhHHHHHHHHHHHHh
Q 012628 400 ILRQIGMFSFTGL---NKA-QSDNMTNKWHVYMTKDG-------RISLAGLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 400 ~~~~~g~f~~~~l---~~~-~~~~ll~~~gI~v~~gg-------Ris~~~~~~e~i~~~~~~l~~~~~ 456 (459)
.++. |.|+|+.+ +.+ +.+.|.+ +||.+.+|+ ||+++ +++++++++++|+++++
T Consensus 302 ~~~~-~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~iRis~~--~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 302 IDSY-TNFITYFFDEKNSTDLSEKLLK-KGIIIRNLKSYGLNAIRITIG--TSYENEKFFTEFDKILR 365 (365)
T ss_dssp CCCS-SSEEEEECSSSCHHHHHHHHHT-TTEECEECGGGTCSEEEEECC--CHHHHHHHHHHHHHHHC
T ss_pred CCCC-CeEEEEECCCCCHHHHHHHHHH-CCEEEEECccCCCCEEEEEcC--CHHHHHHHHHHHHHHhC
Confidence 6555 45677755 444 4555555 699999873 99987 78999999999998763
No 64
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=9.9e-41 Score=332.90 Aligned_cols=336 Identities=16% Similarity=0.147 Sum_probs=251.5
Q ss_pred CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC----CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012628 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (459)
Q Consensus 81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (459)
+++++|+|+.|.+ ..+ .+|.+.+++.+.++.. ....|++..|.+++|+++++++. .|. +++++|++
T Consensus 31 ~~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~-- 100 (400)
T 3asa_A 31 PQHTVINLSIGDT----TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFI-- 100 (400)
T ss_dssp TTSCCEECSSCCC----CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEE--
T ss_pred CCCceEeccCCCC----CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEE--
Confidence 4568999999987 333 3788999888876431 13678888899999999999964 343 55889999
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCC-eeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~-v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
|+|++++++++. ..+.+||+|++++|+|..+...++..|++ ++.+|+++++++..|++.+ ++++++++
T Consensus 101 ~~G~~~al~~~~---~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--------~~~~~v~l 169 (400)
T 3asa_A 101 SDGAKVDLFRLL---SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED--------THIDILCL 169 (400)
T ss_dssp ESCHHHHHHHHH---HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT--------CCCSEEEE
T ss_pred ccChHHHHHHHH---HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc--------cCccEEEE
Confidence 999999999863 34679999999999999999999999999 9999985433444454321 25667777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA 315 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 315 (459)
++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ....+..+-...+++++++||||.||++|+|+||
T Consensus 170 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~ 247 (400)
T 3asa_A 170 CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW 247 (400)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCCCCCceEEEecchhhcCCcchheeE
Confidence 89999999999999999999999999999999999998876531 0111111111124689999999999999999999
Q ss_pred EEEEeCChhH-------HHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012628 316 MNVVCSSSDL-------AARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 388 (459)
Q Consensus 316 ~~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 388 (459)
+++ +++. ++.+..... ...+.+++.++|.++..+|++. ++++.+++++++++++.+.|+
T Consensus 248 ~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~ 313 (400)
T 3asa_A 248 TVI---PQELTYADGHFVIQDWERFL---STTFNGASIPAQEAGVAGLSIL--------PQLEAIHYYRENSDLLRKALL 313 (400)
T ss_dssp EEC---CTTCBCTTSCBHHHHHHHHH---HHHCCCCCHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred Eee---ChhhccchhhhHHHHHHHHh---ccCccCCChHHHHHHHHHhCcH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 955 6664 344432211 1223357788888887777543 146778899999999999999
Q ss_pred hccCCCCCcccccCCcceeeecC-CC-----HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHH
Q 012628 389 AKDKSGKDWSFILRQIGMFSFTG-LN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAII 452 (459)
Q Consensus 389 ~~~g~~~~~~~~~~~~g~f~~~~-l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~ 452 (459)
++| +++..+.+|+|+|+. +. .+++++|++++||.+.|| + |||+.. +++++++++++|+
T Consensus 314 -~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i~~~l~~l~ 387 (400)
T 3asa_A 314 -ATG----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDILAACERLQ 387 (400)
T ss_dssp -HTT----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHHHHHHHHHH
T ss_pred -HCC----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHHHHHHHHHH
Confidence 876 577777778888876 42 256778887779999875 2 999655 8999999999999
Q ss_pred HHHhhcC
Q 012628 453 DSYHNVS 459 (459)
Q Consensus 453 ~~~~~~~ 459 (459)
+++++.+
T Consensus 388 ~~~~~~~ 394 (400)
T 3asa_A 388 MAPALQS 394 (400)
T ss_dssp C------
T ss_pred HHHHhhh
Confidence 9887653
No 65
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=1e-40 Score=334.39 Aligned_cols=358 Identities=17% Similarity=0.127 Sum_probs=254.9
Q ss_pred CCCccchhHHHhh-hCCCCCceeecccccCCCCCC-ccCcHHHHHHHHHHhhcCC----CCCCCCCcccHHHHHHHHHHH
Q 012628 66 PPDPILGVSEAFK-ADTDEKKLNLGVGAYRTEELQ-PYVLDVVKKAENLMLERGE----NKEYLPIEGLAAFNKVTAELL 139 (459)
Q Consensus 66 ~~~~i~~~~~~~~-~~~~~~~i~l~~g~~~~~~~~-~~~~~~v~~a~~~~~~~~~----~~~Y~~~~g~~~lr~aia~~l 139 (459)
.++.+...+..+. ...++++|+|+.|.| .. |++.+.+.+++.+.+.... ...|.+..|.++||+++|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~ 88 (417)
T 3g7q_A 13 RHSGITRLMEDLNDGLRTPGAIMLGGGNP----AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLL 88 (417)
T ss_dssp ---CHHHHHHHHHC-----CCEECSCCCC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhhccCCCceEecCcCC----CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHH
Confidence 3555655555443 334578999999988 22 3223677777777764321 147999999999999999999
Q ss_pred hcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC-----EEEEc-CCCCcchHHHhhh------CCCCeeeeeee
Q 012628 140 FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA-----KVLIS-SPTWGNHKNIFND------ARVPWSEYRYY 207 (459)
Q Consensus 140 ~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd-----~Vlv~-~p~y~~~~~~~~~------~G~~v~~v~~~ 207 (459)
...+|..+++++|++ |+|++++++++.+. .+.+|| +|+++ +|+|..|...+.. .+..+..++.+
T Consensus 89 ~~~~g~~~~~~~i~~--t~G~t~al~~~~~~--l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (417)
T 3g7q_A 89 RETLGWDIEPQNIAL--TNGSQSAFFYLFNL--FAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG 164 (417)
T ss_dssp HHHHCCCCCGGGEEE--ESCHHHHHHHHHHH--HSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG
T ss_pred HHHhCCCCCcccEEE--eCCcHHHHHHHHHH--HcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc
Confidence 877788888999999 99999999998443 366887 89997 9999998776532 22333333321
Q ss_pred cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012628 208 DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287 (459)
Q Consensus 208 ~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~ 287 (459)
..++.+|++.++ ++ ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+..+....+..
T Consensus 165 -~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~--- 235 (417)
T 3g7q_A 165 -QFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--- 235 (417)
T ss_dssp -EEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC---
T ss_pred -ccccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc---
Confidence 124678999987 44 378899999999999999999999999999999999999999997643210000000
Q ss_pred HHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH
Q 012628 288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 367 (459)
Q Consensus 288 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 367 (459)
....++++++.|||| ++++|+|+||+++ ++++.+.+.. .......+++.++|.++..++++.++. +
T Consensus 236 --~~~~~~~i~~~s~sK-~~~~G~r~G~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 301 (417)
T 3g7q_A 236 --PLWNPNIILCMSLSK-LGLPGSRCGIIIA---NDKTITAIAN----MNGIISLAPGGMGPAMMCEMIKRNDLL----R 301 (417)
T ss_dssp --CCCCTTEEEEEESGG-GTCTTSCCEEEEC---CHHHHHHHHH----HHHHHCCCCCSHHHHHHHHHHHTTCHH----H
T ss_pred --cCCCCCEEEEEechh-ccCCCcceEEEEe---CHHHHHHHHH----hhcceeeCCCcHHHHHHHHHHcCcchH----H
Confidence 122467999999999 6889999999865 8885554443 333334467788888888888876653 3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhccCCCC-CcccccCCcceeeecCC-----CHHH-HHHHHhcccEEEcCC--------
Q 012628 368 EMEM-MAGRIKNVRQKLFDSLSAKDKSGK-DWSFILRQIGMFSFTGL-----NKAQ-SDNMTNKWHVYMTKD-------- 431 (459)
Q Consensus 368 ~~~~-~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~g~f~~~~l-----~~~~-~~~ll~~~gI~v~~g-------- 431 (459)
++.+ ++++++++++.+.+.|. +. ++. ++.+..+++|+|+|+.+ +.+. .+.| .++||.+.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~-~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~f~~~~~ 378 (417)
T 3g7q_A 302 LSETVIKPFYYQRVQQTIAIIR-RY-LSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRL-KARGVLMVPGHYFFPGLD 378 (417)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH-HH-CCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHH-HHTTEECEEGGGGCTTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh-cccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHH-HHCCEEEECchhhCCCCc
Confidence 3444 77888899999988887 53 111 25677788999999743 4444 4555 5579999874
Q ss_pred -------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 432 -------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 -------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+ |||++. +++++++++++|.++++++
T Consensus 379 ~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 379 KPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp SCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 2 999998 9999999999999998764
No 66
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-39 Score=319.88 Aligned_cols=324 Identities=18% Similarity=0.147 Sum_probs=258.1
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
.+++|+|+.|++ ..+ .++.+.+++.+.+.......|++ .+.+++|+++++++... ++++|++ |+|++
T Consensus 29 ~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~t 95 (367)
T 3euc_A 29 SHGLVKLDAMEN----PYR-LPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQVP-----AGMEVLL--GNGSD 95 (367)
T ss_dssp CTTCEECCSSCC----CCC-CCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTCC-----TTCEEEE--EEHHH
T ss_pred CCCeeEccCCCC----CCC-CCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCCC-----CcceEEE--cCCHH
Confidence 457899999986 444 38899999998876422367854 68899999999997431 3689999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++++++. ...+.+||+|+++.|+|..+...++..|++++.+|++ .++.+|++.+++++++. +++++++++||||
T Consensus 96 ~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~np 169 (367)
T 3euc_A 96 EIISMLA--LAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAEH--QPAIVYLAYPNNP 169 (367)
T ss_dssp HHHHHHH--HHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC--TTSCCCHHHHHHHHHHH--CCSEEEEESSCTT
T ss_pred HHHHHHH--HHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHHHhhcc--CCCEEEEcCCCCC
Confidence 9999984 3336799999999999999999999999999999984 36789999999999852 4567777899999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 242 TGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
||.+++.+++++|+++|++| |+++|+||+|.++...+ .. ......++++++.||||. +++|+|+||+++
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~---~~----~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~- 240 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES---WM----SRLTDFGNLLVMRTVSKL-GLAGIRLGYVAG- 240 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC---SG----GGGGTCTTEEEEEECCCT-TSCSCCEEEEEE-
T ss_pred CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc---hH----HHHhhCCCEEEEecchhh-cccccCceeeee-
Confidence 99999999999999999999 99999999999887432 11 123455788999999999 999999999976
Q ss_pred eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcc
Q 012628 320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWS 398 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~ 398 (459)
+++ +.+.+..... ..+++.+++.++..+|++. +.+++.+++++++++++.+.|+ ++ | +.
T Consensus 241 --~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~g----~~ 300 (367)
T 3euc_A 241 --DPQ----WLEQLDKVRP--PYNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMA-AHGG----VT 300 (367)
T ss_dssp --CHH----HHHHHGGGCC--SSCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHH-TSTT----CE
T ss_pred --CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCCC----cE
Confidence 777 4444544333 2357888888888888763 2357888999999999999999 87 4 56
Q ss_pred cccCCcceeeecCC-CHHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHh
Q 012628 399 FILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 399 ~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~ 456 (459)
+. +.+|+|+|+.+ +.+.+...++++||.+.+|+ |||++ +++++++++++|+++++
T Consensus 301 ~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 301 VF-PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp EC-CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred EC-CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHhc
Confidence 44 45677888766 44444444456799998762 99987 78999999999999875
No 67
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=3.3e-39 Score=317.45 Aligned_cols=321 Identities=14% Similarity=0.113 Sum_probs=253.4
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
.+++|+|+.|++ ..+ +++.+.+++.+.+.. ...| |..+..++|+++++++.. ++++|++ |+|++
T Consensus 31 ~~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~------~~~~v~~--~~g~t 94 (363)
T 3ffh_A 31 LTKITKLSSNEN----PLG-TSKKVAAIQANSSVE--TEIY-PDGWASSLRKEVADFYQL------EEEELIF--TAGVD 94 (363)
T ss_dssp CSCCEECSSCSC----TTC-CCHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHHTC------CGGGEEE--ESSHH
T ss_pred CCceEEccCCCC----CCC-CCHHHHHHHHHHHHH--hhcC-CCcchHHHHHHHHHHhCC------ChhhEEE--eCCHH
Confidence 468999999986 444 389999999887643 3556 667899999999999852 3789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++++++.+ ..+.+||+|++++|+|..+...++..|++++.+|++ .++.+|++++++++++ +++++++++||||
T Consensus 95 ~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~p~np 167 (363)
T 3ffh_A 95 ELIELLTR--VLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAIDE---KTTIVWICNPNNP 167 (363)
T ss_dssp HHHHHHHH--HHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCCT---TEEEEEEESSCTT
T ss_pred HHHHHHHH--HHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhccc---CCCEEEEeCCCCC
Confidence 99999843 346799999999999999999999999999999984 3688999999999975 7888889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++.+|++.|++ |+++|+||+|.++.++.. .+........++++++.||||.+|++|+|+||+++
T Consensus 168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--- 239 (363)
T 3ffh_A 168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVTPQP----EKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA--- 239 (363)
T ss_dssp TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCSSCC----CCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE---
T ss_pred cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcCccc----cCHHHHhhcCCCEEEEeechhhhcCchhceeeeec---
Confidence 9999999999999998887 999999999998875211 11112234567899999999999999999999976
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWSFI 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~~ 400 (459)
+++.. +.+..... ..+++.+++.++...|++. +.+++.+++++++++++.+.|+ + .| +.+.
T Consensus 240 ~~~~~----~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~g----~~~~ 301 (363)
T 3ffh_A 240 DKEII----RQLNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAK-RFEK----VKLY 301 (363)
T ss_dssp CHHHH----HHHHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHH-HCTT----CEEC
T ss_pred CHHHH----HHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHh-hCCC----ceEC
Confidence 88844 44444332 2367888888888887654 2367888999999999999999 7 55 5666
Q ss_pred cCCcceeeecCC--CH-HHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHH
Q 012628 401 LRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 401 ~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~ 455 (459)
++. |.|+|+.+ +. ++.+.|.+ +||.+.+|. ||+++ +++++++++++|++++
T Consensus 302 ~~~-~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 302 PAN-GNFVLIDLGIEAGTIFSYLEK-NGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKLL 363 (363)
T ss_dssp CCC-SSEEEEECSSCHHHHHHHHHH-TTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred CCC-CeEEEEECCCCHHHHHHHHHH-CCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHhC
Confidence 555 55777765 34 44556665 699999863 99987 8899999999998763
No 68
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=1.4e-39 Score=321.66 Aligned_cols=312 Identities=17% Similarity=0.142 Sum_probs=250.3
Q ss_pred HHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCc
Q 012628 109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG 188 (459)
Q Consensus 109 a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~ 188 (459)
++.+.+... ...|++..|.++||+++++++.. +++++|++ |+||++++.++. ...+.+||+|++++|+|.
T Consensus 47 ~~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~~--~~l~~~gd~Vl~~~~~~~ 116 (375)
T 3op7_A 47 DFYKKLQGT-KLNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLVL--YSLIEPGDHVISLYPTYQ 116 (375)
T ss_dssp HHHHHHHTS-CCSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESSCT
T ss_pred HHHHHHhcC-CcCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHHH--HHhcCCCCEEEEeCCCch
Confidence 333444444 37899999999999999998632 33789999 999999999984 444779999999999999
Q ss_pred chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012628 189 NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD 268 (459)
Q Consensus 189 ~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D 268 (459)
.+...++..|++++.+|++.++++.+|++.+++++++ +++++++++||||||.+++.+++++|+++|++||+++|+|
T Consensus 117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~D 193 (375)
T 3op7_A 117 QLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD 193 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999999999997556778999999999975 6778888999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHH
Q 012628 269 VAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHG 348 (459)
Q Consensus 269 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (459)
|+|.++.+++. ..+ .+..++++++.||||.+|++|+|+||+++ +++ +.+.+.........+++.+.
T Consensus 194 e~~~~~~~~~~----~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v~~---~~~----l~~~~~~~~~~~~~~~~~~~ 259 (375)
T 3op7_A 194 EVYRSFSELDV----PSI---IEVYDKGIAVNSLSKTYSLPGIRIGWVAA---NHQ----VTDILRDYRDYTMICAGVFD 259 (375)
T ss_dssp CCSCCCSSSCC----CCH---HHHCTTEEEEEESSSSSSCGGGCCEEEEC---CHH----HHHHHTTTGGGTTSCCCHHH
T ss_pred cccccccccCC----Cch---hhhcCCEEEEeEChhhcCCcccceEEEEe---CHH----HHHHHHHHHhhhccCCCcHH
Confidence 99999886421 121 23356789999999999999999999955 888 44445444444444667777
Q ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----C-HHHHHHHHhc
Q 012628 349 ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNK 423 (459)
Q Consensus 349 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~ 423 (459)
+.++...|++. .+.+++.+++++++++.+.+.|+ +.+ .+.+..+.++++.|+.+ + .+++++++++
T Consensus 260 ~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 329 (375)
T 3op7_A 260 DLVAQLALAHY------QEILERNRHILEENLAILDQWIE-EEP---LVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQE 329 (375)
T ss_dssp HHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHH-HCT---TEEECCCSSSSCEEEEECCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CceEecCCCeEEEeEEcCCCCCHHHHHHHHHHh
Confidence 77777666532 34567888999999999999999 753 26677788887776532 3 4567788777
Q ss_pred ccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 424 WHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 424 ~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+||.+.||. ||+++. +++++++++++|.++++++
T Consensus 330 ~gi~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 330 HGVLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HCEECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred CCEEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 899998862 999987 6789999999999999865
No 69
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=2.7e-40 Score=340.98 Aligned_cols=338 Identities=11% Similarity=0.053 Sum_probs=252.2
Q ss_pred ceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcC-CCC---ccccCceEEeecccc
Q 012628 85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNS---VLKEQRVATVQGLSG 160 (459)
Q Consensus 85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~-~~~---~~~~~~i~~~~t~gg 160 (459)
+|+|++|.| +++ ++.+.+++.+.+.. ..|++..|..++|+++++++... ++. ..++++|++ |+|+
T Consensus 106 ~i~l~~g~~----~~~--~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G~ 174 (546)
T 2zy4_A 106 SLSYVRDQL----GLD--PAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEGG 174 (546)
T ss_dssp HHHHHHHTS----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEHH
T ss_pred hhecccCCC----CCC--ChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECCH
Confidence 789999987 443 56666677666532 67988889999999988765432 222 125789999 9999
Q ss_pred hhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHhh--hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 161 TGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 161 t~a~~l~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~--~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
++++.++...+. .+.+||+|++++|+|..|...+. ..|++++++|++++++|.+|++.+++.+.. +++++++
T Consensus 175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~v~l 251 (546)
T 2zy4_A 175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP---AIKIFFC 251 (546)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST---TEEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC---CCeEEEE
Confidence 999999854421 25699999999999999998754 457889999987666788999999887653 7788888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH--HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVI--QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~--~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (459)
++||||||.+++.+++++|+++| +++|++||+||+|.++.++. .++... ..+++++++||||.+|++|+|+
T Consensus 252 ~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~-----~s~~~~--~~~~~i~~~S~SK~~g~~GlRi 324 (546)
T 2zy4_A 252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF-----QSLFAI--CPENTLLVYSFSKYFGATGWRL 324 (546)
T ss_dssp ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC-----CCHHHH--CGGGEEEEEESTTTTTCGGGCE
T ss_pred ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC-----cCHHHh--CCCCEEEEEeCccccCCCCcce
Confidence 99999999999999999999999 78999999999999987531 122222 1257999999999999999999
Q ss_pred ceEEEEeCChhHHHHHHHHH------------Hh--------------------hccccccCCchHHHHHH-----HHHh
Q 012628 314 GAMNVVCSSSDLAARVKSQL------------KR--------------------LARPMYSNPPVHGARIV-----ANVV 356 (459)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~------------~~--------------------~~~~~~~~~~~~~~~~~-----~~~L 356 (459)
||+++ +++++++.+...+ .. .......+.+.+.|.++ ..++
T Consensus 325 G~~~~--~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all 402 (546)
T 2zy4_A 325 GVVAA--HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALM 402 (546)
T ss_dssp EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEE--CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHH
Confidence 99965 3333555553211 10 01122235677777653 2445
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCCC---------------------HH
Q 012628 357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---------------------KA 415 (459)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l~---------------------~~ 415 (459)
.+. ..++++.++.|+++++.+.+.|. . + +.+..+++|||+|+++. .+
T Consensus 403 ~~~------~~~~~~~r~~~~~r~~~l~~~L~-~-~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 403 DEA------DEYKHTLKQLIRRRETTLYRELG-M-P----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp CTT------CHHHHHHHHHHHHHHHHHHGGGT-S-S----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred hcc------HHHHHHHHHHHHHHHHHHHHhcC-C-C----cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence 543 13357888899999998888775 2 2 35567889999887642 24
Q ss_pred HHHHHHhcccEEEcCCC---------cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 416 QSDNMTNKWHVYMTKDG---------RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 416 ~~~~ll~~~gI~v~~gg---------Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
++.++++++||.+.||. |||++..+++++++++++|++++++
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 46677777899999972 9999977899999999999998865
No 70
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=3.2e-39 Score=316.91 Aligned_cols=314 Identities=17% Similarity=0.186 Sum_probs=242.7
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
+++|+|+.|++ ..++ ++.+ .+. . ..+|++. +.+++|+++|+++.. ++++|++ |+|+++
T Consensus 29 ~~~i~l~~~~~----~~~~-~~~v------a~~-~-~~~Y~~~-~~~~lr~~la~~~~~------~~~~v~~--~~G~~~ 86 (356)
T 1fg7_A 29 NGDVWLNANEY----PTAV-EFQL------TQQ-T-LNRYPEC-QPKAVIENYAQYAGV------KPEQVLV--SRGADE 86 (356)
T ss_dssp TCSEECSSCCC----SSCC-CCCC------CCC-C-TTSCCCS-SCHHHHHHHHHHHTS------CGGGEEE--ESHHHH
T ss_pred CceEEeeCCCC----CCCC-CHhH------hhh-h-hccCCCc-cHHHHHHHHHHHhCC------ChHHEEE--cCCHHH
Confidence 36899999986 3333 3444 122 2 3678554 689999999999732 3689999 999999
Q ss_pred HHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 163 SLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 163 a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
+++++.+ ..+.+| |+|++++|+|..|...++..|++++.+|++ +++++|+++++++++ +++++++++||||
T Consensus 87 ai~~~~~--~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~----~~~~v~l~~p~np 158 (356)
T 1fg7_A 87 GIELLIR--AFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD----GVKVVYVCSPNNP 158 (356)
T ss_dssp HHHHHHH--HHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT----TEEEEEEESSCTT
T ss_pred HHHHHHH--HHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc----CCCEEEEeCCCCC
Confidence 9999843 336799 999999999999999999999999999984 467899999988775 5678888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++++|+++|+ +|+++|+||+|.++... . ++..+.+..+++++++||||.||++|+|+||+++
T Consensus 159 tG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~---~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--- 228 (356)
T 1fg7_A 159 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---A---SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA--- 228 (356)
T ss_dssp TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---G---CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE---
T ss_pred CCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---C---cHHHHHhhCCCEEEEecchHhhcCchhhhEEEEe---
Confidence 999999999999999999 99999999999988621 1 1112234456899999999999999999999976
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 401 (459)
+++.++. +..... .+ +++.++|.++..+|++.++ +++++.+++++++++++.+.|+ +++ ++....
T Consensus 229 ~~~~~~~----l~~~~~-~~-~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~ 293 (356)
T 1fg7_A 229 NEEVINL----LMKVIA-PY-PLSTPVADIAAQALSPQGI-----VAMRERVAQIIAEREYLIAALK-EIP---CVEQVF 293 (356)
T ss_dssp CHHHHHH----HHHHSC-SS-CSCHHHHHHHHHHTSHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HST---TEEEEC
T ss_pred CHHHHHH----HHHhcC-CC-CCCHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHHHHHH-hCC---CceEEC
Confidence 8884444 333322 23 6788888888888875433 1367888999999999999999 875 122334
Q ss_pred CCcceeeecCC-CH-HHHHHHHhcccEEEcC-C------C--cEEEccCChhhHHHHHHHHHHH
Q 012628 402 RQIGMFSFTGL-NK-AQSDNMTNKWHVYMTK-D------G--RISLAGLSLAKCEYLADAIIDS 454 (459)
Q Consensus 402 ~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~-g------g--Ris~~~~~~e~i~~~~~~l~~~ 454 (459)
+.+|+|+|+.+ +. ++.++| .++||.+.+ | + |||++ +++++++++++|+++
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 294 DSETNYILARFKASSAVFKSL-WDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRAE 354 (356)
T ss_dssp CCSSSEEEEEETTHHHHHHHH-HHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCHHHHHHHH-HHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 55678888866 34 445666 557999998 5 2 99987 678999999998753
No 71
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.4e-39 Score=329.02 Aligned_cols=365 Identities=14% Similarity=0.086 Sum_probs=264.8
Q ss_pred CCCccchhHHHhhh-CCCCCce-eecccccCCCCCCccCcHHHHHHHHHHhhc-------C----CCCCCCCCcccHHHH
Q 012628 66 PPDPILGVSEAFKA-DTDEKKL-NLGVGAYRTEELQPYVLDVVKKAENLMLER-------G----ENKEYLPIEGLAAFN 132 (459)
Q Consensus 66 ~~~~i~~~~~~~~~-~~~~~~i-~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-------~----~~~~Y~~~~g~~~lr 132 (459)
+++++...+..+.. ...+++| +|+.|.| + ..|++.+.+.+++.+.+.. . ....|.+..|.+++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~p-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr 89 (444)
T 3if2_A 13 QPTGISQLMDDLGDALKSDQPVNMLGGGNP-A--KIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFI 89 (444)
T ss_dssp SCCHHHHHHHHHHHHHHSSSCCEECSCCCC-C--CCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHH
T ss_pred CchhHHHHHHHHHhhhcCchhhhccCCCCC-C--cccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHH
Confidence 35566665544321 1247899 9999988 1 1222235666667666543 1 025799999999999
Q ss_pred HHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC--------------EEEEc-CCCCcchHH-----
Q 012628 133 KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--------------KVLIS-SPTWGNHKN----- 192 (459)
Q Consensus 133 ~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd--------------~Vlv~-~p~y~~~~~----- 192 (459)
+++|+++...+|..+++++|++ |+|++++++++. ...+.+|| +|+++ +|+|..|..
T Consensus 90 ~~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~~--~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~ 165 (444)
T 3if2_A 90 DALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYLF--NLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG 165 (444)
T ss_dssp HHHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS
T ss_pred HHHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHHH--HHHhCCCccccccccccccccceEEEeCCCCccchhhccccc
Confidence 9999999887788888999999 999999999984 33356887 78876 999999876
Q ss_pred -HhhhCCCCeeeeeeecCC---CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012628 193 -IFNDARVPWSEYRYYDPK---TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD 268 (459)
Q Consensus 193 -~~~~~G~~v~~v~~~~~~---~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D 268 (459)
.+...|.+++.+|+++++ ++++|++.|++++....++++++++++||||||.+++.+++++|+++|++||+++|+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D 245 (444)
T 3if2_A 166 QHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIID 245 (444)
T ss_dssp CCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred chhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345678888888874211 3579999999884321237888999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHH
Q 012628 269 VAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHG 348 (459)
Q Consensus 269 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (459)
|+|..+.......+.. ....++++++.||||. +++|+|+||+++ ++++.+.+... ......+++.++
T Consensus 246 e~~~~~~~~~~~~~~~-----~~~~~~~i~~~S~sK~-~~~G~r~G~~~~---~~~l~~~~~~~----~~~~~~~~~~~~ 312 (444)
T 3if2_A 246 NAYGMPFPNIIYSDAH-----LNWDNNTILCFSLSKI-GLPGMRTGIIVA---DAKVIEAVSAM----NAVVNLAPTRFG 312 (444)
T ss_dssp CTTCTTTTCCBCSCCC-----CCCCTTEEEEEESTTT-TCGGGCCEEEEC---CHHHHHHHHHH----HHHHHSSCCCHH
T ss_pred CCCCCccccccccccc-----ccCCCCEEEEechhhc-cCCCCceEEEEE---CHHHHHHHHHH----HHhccCCCChHH
Confidence 9997533210000000 1224679999999997 789999999865 77755554433 223334667788
Q ss_pred HHHHHHHhCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc-cCCCCCcccccCCcceeeecC-----CCHHH-HHHH
Q 012628 349 ARIVANVVGNPALFDEWKAEMEM-MAGRIKNVRQKLFDSLSAK-DKSGKDWSFILRQIGMFSFTG-----LNKAQ-SDNM 420 (459)
Q Consensus 349 ~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~-~g~~~~~~~~~~~~g~f~~~~-----l~~~~-~~~l 420 (459)
|.++..++.+..+. +++.+ +++.++++++.+.+.|. + ++. ..+.+..+.+|+|+|+. ++.+. ++.|
T Consensus 313 ~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l 386 (444)
T 3if2_A 313 AAIATPLVANDRIK----QLSDNEIKPFYQKQATLAVKLLK-QALGD-YPLMIHKPEGAIFLWLWFKDLPISTLDLYERL 386 (444)
T ss_dssp HHHHHHHHHTSHHH----HHHHHTHHHHHHHHHHHHHHHHH-HHSSS-SSEEEECCCBSSEEEEEETTCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCchh----HHHHHHHHHHHHHHHHHHHHHHH-Hhccc-CCceEecCCccEEEEEEcCCCCCCHHHHHHHH
Confidence 88888888776543 33444 67788888888888887 5 320 02566678889999873 34444 4455
Q ss_pred HhcccEEEcCC----------------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 421 TNKWHVYMTKD----------------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 421 l~~~gI~v~~g----------------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+++||.+.|| + |||++. +++++++++++|.++++++
T Consensus 387 -~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 387 -KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp -HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHH
T ss_pred -HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHH
Confidence 5579998763 2 999998 9999999999999998764
No 72
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=9.9e-38 Score=303.57 Aligned_cols=313 Identities=16% Similarity=0.173 Sum_probs=242.5
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
.++.|+|+.+++ ..+ ++|.+.+++.+.... ...| |..|.+++|+++++++.. ++++|++ |+|++
T Consensus 15 ~~~~i~l~~n~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~------~~~~i~~--t~G~~ 78 (337)
T 3p1t_A 15 AAQAVCLAFNEN----PEA-VEPRVQAAIAAAAAR--INRY-PFDAEPRVMRKLAEHFSC------PEDNLML--VRGID 78 (337)
T ss_dssp CCCCEECSSCCC----CSC-CCHHHHHHHHHHGGG--TTSC-CTTHHHHHHHHHHHHHTS------CGGGEEE--ESHHH
T ss_pred CCCceEeeCCCC----CCC-CCHHHHHHHHHhhhh--hccC-CCCchHHHHHHHHHHhCc------CHHHEEE--eCCHH
Confidence 357899998865 333 379999999988764 3678 678999999999999743 2689999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++++++.. .+ +||+|++++|+|..+...++..|++++.+|++ +++++|++.+++. .+++++++++||||
T Consensus 79 ~~l~~~~~---~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-----~~~~~v~i~~p~np 147 (337)
T 3p1t_A 79 ECFDRISA---EF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLT--DDLLLDPNDLAQV-----SRDDCVVLANPSNP 147 (337)
T ss_dssp HHHHHHHH---HS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBC--TTSSBCHHHHTTC-----CTTEEEEEESSCTT
T ss_pred HHHHHHHH---hc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHhh-----cCCCEEEEeCCCCC
Confidence 99999833 34 99999999999999999999999999999984 4678999998764 25788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++.+| |+++++ +|+||+|+++.+.... . ....+++++++||||.||++|+|+||+++
T Consensus 148 tG~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~~----~----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~--- 212 (337)
T 3p1t_A 148 TGQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRAR----G----LAYGENELVFRSFSKSYGLAGLRLGALFG--- 212 (337)
T ss_dssp TCCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSSS----C----CCCBTTEEEEEESSSTTCCTTTCCEEEEC---
T ss_pred CCCCCCHHHHHHH---HHhCCc-EEEECCChhhcccccc----c----cccCCCEEEEeeCchhccCcchheEEEEe---
Confidence 9999988876655 566776 5669999988754211 0 12345789999999999999999999865
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 401 (459)
+++. .+.+..... ..+++.++|.++..+|++.+. +++.++++.++++++.+.|+ ++| +.+.+
T Consensus 213 ~~~~----~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~ 274 (337)
T 3p1t_A 213 PSEL----IAAMKRKQW--FCNVGTLDLHALEAALDNDRA-------REAHIAKTLAQRRRVADALR-GLG----YRVAS 274 (337)
T ss_dssp CHHH----HHHHHTTSC--TTCSCHHHHHHHHHHHTCHHH-------HHHHHHHHHHHHHHHHHHHH-HTT----CCBCC
T ss_pred CHHH----HHHHHhhcC--CCCCCHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHHHH-HCc----CEECC
Confidence 7774 444444322 336777888888888887432 34555666777899999999 876 57777
Q ss_pred CCcceeeecCCCHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHh
Q 012628 402 RQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 402 ~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~ 456 (459)
++++++.|...+.+.+..+++++||.+.+|. |||++ +++++++++++|+++.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 275 SEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 7777666655555555556666799999873 99987 68999999999998764
No 73
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=4.6e-38 Score=309.57 Aligned_cols=337 Identities=14% Similarity=0.105 Sum_probs=252.1
Q ss_pred ccchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc
Q 012628 69 PILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK 148 (459)
Q Consensus 69 ~i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~ 148 (459)
.+.+....+..+ ++++|||+.|.+ ..+ .++.+.+++.+.++. ...|+ ..|..++|+++++++.. +
T Consensus 11 ~~~~~~~~~~~~-~~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~-~~~~~~l~~~la~~~~~------~ 75 (364)
T 1lc5_A 11 NIREPATVLGIS-PDQLLDFSANIN----PLG-MPVSVKRALIDNLDC--IERYP-DADYFHLHQALARHHQV------P 75 (364)
T ss_dssp CCHHHHHHHTSC-GGGSEECSSCCC----TTC-CCHHHHHHHHHTGGG--GGSCC-CTTCHHHHHHHHHHHTS------C
T ss_pred cHHHHHHhcCCC-ccceEEeccccC----CCC-CCHHHHHHHHHHHHH--hhcCC-CCCHHHHHHHHHHHHCc------C
Confidence 344444444322 346899999985 333 378899999988754 36774 46899999999999742 2
Q ss_pred cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
+++|++ |+|++++++++.+. + +||+|+++.|+|..+...++..|++++.+|+++++++.+ ++++.+.+++
T Consensus 76 ~~~v~~--~~g~~~al~~~~~~---~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~--- 145 (364)
T 1lc5_A 76 ASWILA--GNGETESIFTVASG---L-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTP--- 145 (364)
T ss_dssp GGGEEE--ESSHHHHHHHHHHH---H-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCT---
T ss_pred HHHEEE--CCCHHHHHHHHHHH---c-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccC---
Confidence 688999 99999999998433 3 789999999999999999999999999999853233333 5666666543
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (459)
+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ... .+.+..++++++.||||.+|+
T Consensus 146 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~---~~~~~~~~~i~~~s~sK~~~~ 220 (364)
T 1lc5_A 146 DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFI---PALKDNPHIWVLRSLTKFYAI 220 (364)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSG---GGCTTCTTEEEEEESTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc--chh---hHhccCCCEEEEEECchhhcC
Confidence 567778899999999999999999999999999999999999998876421 111 122345678999999999999
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 388 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 388 (459)
+|+|+||++ +.+++.++.+ ..... ..+++.++|.++..+|++. +++++.+++++++++++.+.|+
T Consensus 221 ~G~r~G~~~--~~~~~~~~~l----~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~ 285 (364)
T 1lc5_A 221 PGLRLGYLV--NSDDAAMARM----RRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQALC 285 (364)
T ss_dssp TTTCCEEEE--CCCHHHHHHH----HHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEE--ECCHHHHHHH----HHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999999995 2388854444 33222 2367788888888888763 2367888999999999999999
Q ss_pred hccCCCCCcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHH
Q 012628 389 AKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 389 ~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~ 455 (459)
+++ ++.+.++. |.|+|+.+. .++.+.|++ +||.+.+| + |||++ +++++++++++|++++
T Consensus 286 -~~~---~~~~~~~~-g~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 286 -QLP---LLTVYPGR-ANYLLLRCEREDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 357 (364)
T ss_dssp -TST---TEEECCCS-SSEEEEEESCTTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred -cCC---CCEECCCC-CeEEEEECCCcHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 772 15665554 556666442 255667766 59999875 2 99986 5788999999999988
Q ss_pred hhc
Q 012628 456 HNV 458 (459)
Q Consensus 456 ~~~ 458 (459)
+++
T Consensus 358 ~~~ 360 (364)
T 1lc5_A 358 TGI 360 (364)
T ss_dssp ---
T ss_pred hcc
Confidence 764
No 74
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=6.5e-42 Score=340.50 Aligned_cols=341 Identities=14% Similarity=0.069 Sum_probs=265.1
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
+++++|+.|.| ..++ ++.+.+++.+.+... ...|++. ..++|+++++++...+|..+++++|++ |+|+++
T Consensus 31 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~~ 100 (392)
T 3b1d_A 31 PQLLPAWIADM----DFEV-MPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVVP 100 (392)
Confidence 37899999987 4443 788999988877543 3677654 789999999998877777777899999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCC-CCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++.++.+. .+.+||+|+++.|+|..+...++..|++++.+|+++++ ++.+|++.+++.+++ ++++++++++||||
T Consensus 101 a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 176 (392)
T 3b1d_A 101 AISIAIQA--FTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNP 176 (392)
Confidence 99998443 36789999999999999999999999999999984332 467999999999873 25667778999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .++++++.||||.+|++|+|+||+++
T Consensus 177 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 252 (392)
T 3b1d_A 177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII-- 252 (392)
Confidence 99999999999999999999999999999999987531 12222222122 46789999999999999999999954
Q ss_pred CChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcc
Q 012628 321 SSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKSGKDWS 398 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~ 398 (459)
++++.++.+.. ..... +.+++.++|.++...|.+. .+.+++.+++++++++.+.+.|+ + ++ ++.
T Consensus 253 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~ 318 (392)
T 3b1d_A 253 ENPTLCAQFKH----QQLVNNHHEVSSLGYIATETAYRYG------KPWLVALKAVLEENIQFAVEYFA-QEAP---RLK 318 (392)
Confidence 34454444333 22222 2355777777777777643 13367888999999999999998 6 52 167
Q ss_pred cccCCcceeeecCCC------HHHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHh
Q 012628 399 FILRQIGMFSFTGLN------KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 399 ~~~~~~g~f~~~~l~------~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~ 456 (459)
+..+++++++|+.+. .++.++|++++||.+.|| + ||+++. +++++++++++|+++++
T Consensus 319 ~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 319 VMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 788899999887652 234667765679999886 1 999987 78999999999998875
No 75
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=1.3e-37 Score=307.01 Aligned_cols=325 Identities=14% Similarity=0.178 Sum_probs=249.9
Q ss_pred ceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
.|||+.|++ ..+ .++.+.+++.+.++.. ....|++..+ .++|+++++++...+|..+++++|++ |+|+++
T Consensus 32 ~idl~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~ 103 (369)
T 3cq5_A 32 DIRLNTNEN----PYP-PSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE 103 (369)
T ss_dssp SEECSSCCC----CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred ceeccCCCC----CCC-CCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence 489999987 333 3788999988877541 1367866555 79999999998776666666889999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT 242 (459)
+++++.+ ..+.+||+|++++|+|..+...++..|++++.+|. ++++.+|++.+++++++. +++++++++|||||
T Consensus 104 al~~~~~--~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~npt 177 (369)
T 3cq5_A 104 ILQQLLQ--AFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRAK--QPDIVFVTTPNNPT 177 (369)
T ss_dssp HHHHHHH--HHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHHH--CCSEEEEESSCTTT
T ss_pred HHHHHHH--HhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhcc--CCCEEEEeCCCCCC
Confidence 9999843 33679999999999999999999999999999997 446789999999999751 34566779999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
|.+++.+++++|++. +++++|+||+|.++.++ .+.. .+.+..+ +++++.||||.+|++|+|+||+++
T Consensus 178 G~~~~~~~l~~l~~~---~~~~li~De~~~~~~~~---~~~~---~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--- 245 (369)
T 3cq5_A 178 GDVTSLDDVERIINV---APGIVIVDEAYAEFSPS---PSAT---TLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVA--- 245 (369)
T ss_dssp CCCCCHHHHHHHHHH---CSSEEEEECTTGGGCCS---CCGG---GGTTTCTTTEEEEEESSSTTSCGGGCCEEEEE---
T ss_pred CCCCCHHHHHHHHHh---CCCEEEEECCchhhcCC---cchH---HHHhhCCCCEEEEEechHhcCCcccceEEEEe---
Confidence 999988776666654 56999999999988753 1111 1223345 789999999999999999999976
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 401 (459)
+++ +.+.+...... + +++.++|.++..+|++. +++++.+++++++++++.+.|+ +.| +++.+
T Consensus 246 ~~~----~~~~l~~~~~~-~-~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~ 307 (369)
T 3cq5_A 246 NPA----FIDAVMLVRLP-Y-HLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLE-ELG----YAVVP 307 (369)
T ss_dssp CTH----HHHHHHTTSCT-T-CSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHH-HHT----CEEEC
T ss_pred CHH----HHHHHHHcCCC-C-CCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC----CEECC
Confidence 677 44444443322 2 57788888887777653 2357888999999999999999 776 56664
Q ss_pred CCcceeeecCC--CHH-HHHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 402 RQIGMFSFTGL--NKA-QSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 402 ~~~g~f~~~~l--~~~-~~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
+ .|.|+|+.+ +.+ +.+.|. ++||.+.+|| ||+++ +++++++++++|+++++.
T Consensus 308 ~-~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 308 S-ESNFVFFGDFSDQHAAWQAFL-DRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp C-SSSEEEEECCSSHHHHHHHHH-HTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred C-CCeEEEEECCCCHHHHHHHHH-HCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 4 456777654 343 455554 5799999973 99987 789999999999998753
No 76
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=2.7e-37 Score=303.35 Aligned_cols=322 Identities=15% Similarity=0.159 Sum_probs=250.9
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
++++|||+.|.+ ..+ +++.+.+++.+.++. ...| +..+..++|+++++++.. ++++|++ |+|++
T Consensus 25 ~~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~t 88 (361)
T 3ftb_A 25 GRELLDYSSNIN----PLG-IPKSFLNNIDEGIKN--LGVY-PDVNYRRLNKSIENYLKL------KDIGIVL--GNGAS 88 (361)
T ss_dssp ---CEETTCCCC----TTC-SCHHHHTTHHHHHHG--GGSC-CCTTCHHHHHHHHHHHTC------CSCEEEE--ESSHH
T ss_pred CCCEEEecCCCC----CCC-CCHHHHHHHHHHHHH--hcCC-CCccHHHHHHHHHHHhCC------CcceEEE--cCCHH
Confidence 468999999976 333 378999999888765 3567 667899999999999842 3789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++++++.+ .+ |+|+++.|+|..+...++..|++++.+|++ .+.+++++++++++++ ++++++++||||
T Consensus 89 ~al~~~~~---~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~l~~----~~~v~i~~p~np 156 (361)
T 3ftb_A 89 EIIELSIS---LF---EKILIIVPSYAEYEINAKKHGVSVVFSYLD--ENMCIDYEDIISKIDD----VDSVIIGNPNNP 156 (361)
T ss_dssp HHHHHHHT---TC---SEEEEEESCCTHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHTTT----CSEEEEETTBTT
T ss_pred HHHHHHHH---Hc---CcEEEecCChHHHHHHHHHcCCeEEEeecC--cccCCCHHHHHHhccC----CCEEEEeCCCCC
Confidence 99999833 23 999999999999999999999999999985 3456888999998874 567778999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++++|+++|++||+++|+||+|.++.++ ... +........+++++++|+||.+|++|+|+||++ +.
T Consensus 157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~---~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~--~~ 230 (361)
T 3ftb_A 157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSS---SFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI--TN 230 (361)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTS---SSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEE--ES
T ss_pred CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-ccc---chhHhcccCCCEEEEeeChhhcCCCCcceeEEE--eC
Confidence 999999999999999999999999999999988864 111 111223455788999999999999999999984 35
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc-cc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS-FI 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~ 400 (459)
+++ +.+.+..... ..+++.+++.++...|++. +.+++.+++++++++++.+.|+ +++ ++. +.
T Consensus 231 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~---~~~~~~ 293 (361)
T 3ftb_A 231 NKE----IAAKIKAKQN--PWNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELN-KIG---FIKRVF 293 (361)
T ss_dssp CHH----HHHHHHTTSC--TTCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHH-HSS---SEEEEE
T ss_pred CHH----HHHHHHhhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC---CCceec
Confidence 777 4444444333 2367788888888888863 3367889999999999999999 873 156 55
Q ss_pred cCCcceeeecCC---CH-HHHHHHHhcccEEEcCC--------C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 401 LRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 401 ~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+.++ |+|+.+ +. ++.+.|.++ ||.+.+| + |||++ +++++++++++|+++.+.+
T Consensus 294 ~~~~~-~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~l 361 (361)
T 3ftb_A 294 SPHAN-FVLCRLENISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVENNL 361 (361)
T ss_dssp CCSSS-EEEEEESSSCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHHTC
T ss_pred CCCCe-EEEEEcCCCCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHhcC
Confidence 66554 555543 34 456666664 9999885 2 99987 6788899999998887653
No 77
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=8.6e-37 Score=300.01 Aligned_cols=316 Identities=15% Similarity=0.138 Sum_probs=239.8
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+++|+|+.|++ ..++ ++.+.+++.+.+... ....|+ ..+..++|+++++++. +++++|++ |+|+
T Consensus 26 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~g------~~~~~i~~--t~g~ 91 (360)
T 3hdo_A 26 ASWIKLNTNEN----PYPP-SPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELYG------FDPSWIIM--ANGS 91 (360)
T ss_dssp TTSEECSSCCC----SSCC-CHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHHT------CCGGGEEE--ESSH
T ss_pred cceeeccCCCC----CCCC-CHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHhC------cCcceEEE--cCCH
Confidence 57999999987 4443 899999999988653 125674 4577999999999984 33789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++++++.+ ..+.+||+|++++|+|..+...++..|++++.+|++ +++.+ +++++.+ +++++++++|||
T Consensus 92 ~~al~~~~~--~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~--~~l~~~~-----~~~~v~i~~p~n 160 (360)
T 3hdo_A 92 DEVLNNLIR--AFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GDFRI--AGFPERY-----EGKVFFLTTPNA 160 (360)
T ss_dssp HHHHHHHHH--HHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBC--TTSSB--TTCCSSB-----CSSEEEEESSCT
T ss_pred HHHHHHHHH--HHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCC--CCCCH--HHHHhhc-----CCCEEEEeCCCC
Confidence 999999843 346799999999999999999999999999999984 33444 4443322 234777899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
|||.+++.++ |.++|+++|+++|+||+|.++... ... .+.+..++++++.||||.+|++|+|+||+++
T Consensus 161 ptG~~~~~~~---l~~l~~~~~~~li~De~~~~~~~~----~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-- 228 (360)
T 3hdo_A 161 PLGPSFPLEY---IDELARRCAGMLVLDETYAEFAES----NAL---ELVRRHENVVVTRTLSKSYSLAGMRIGLAIA-- 228 (360)
T ss_dssp TTCCCCCHHH---HHHHHHHBSSEEEEECTTGGGSSC----CCT---HHHHHCSSEEEEEESTTTTSCTTSCCEEEEC--
T ss_pred CCCCCcCHHH---HHHHHHHCCCEEEEECChHhhCCc----chh---HHhccCCCEEEEecchHhhcCCccceeeEee--
Confidence 9999988876 555667899999999999987432 111 2234567899999999999999999999865
Q ss_pred CChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012628 321 SSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 400 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 400 (459)
+++..+.+ ...... .+++.++|.++...|++.+ .+++.+++++++++++.+.|+ ++| +.+.
T Consensus 229 -~~~~~~~~----~~~~~~--~~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~ 289 (360)
T 3hdo_A 229 -RPEVIAAL----DKIRDH--YNLDRLAQAACVAALRDQA-------YLSECCRRIRETREWFTTELR-SIG----YDVI 289 (360)
T ss_dssp -CHHHHHHH----HHHSCS--CCSCHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHHHH-HTT----CEEC
T ss_pred -CHHHHHHH----HHhCCC--CCCCHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC----CEEc
Confidence 77744443 333222 3678888888888877642 357888999999999999999 876 5666
Q ss_pred cCCcceeeecC---CCHHHHHHHHhcccEEEcCCC--------cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 401 LRQIGMFSFTG---LNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 401 ~~~~g~f~~~~---l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
++. +.|+|+. .+.+.+...+.++||.+.+++ |||++ +++++++++++|+++.+.
T Consensus 290 ~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 290 PSQ-GNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp CCS-SSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC-
T ss_pred CCC-ccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhcc
Confidence 555 4566653 344444444445799998853 99987 789999999999987653
No 78
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=5e-39 Score=319.50 Aligned_cols=323 Identities=14% Similarity=0.108 Sum_probs=237.7
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHh--hc-CCCCCCCCCccc-----HHHHHHHHHHHhcCCCCcccc-Cce
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ER-GENKEYLPIEGL-----AAFNKVTAELLFGADNSVLKE-QRV 152 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~-~~~~~Y~~~~g~-----~~lr~aia~~l~~~~~~~~~~-~~i 152 (459)
++++|+|+.|.| .++. ++.+.+++.+.. .. ....+|++..|. ++||+++|+++. .+|..+++ ++|
T Consensus 21 ~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i 94 (391)
T 3bwn_A 21 SDFVVNLDHGDP----TAYE-EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYI 94 (391)
T ss_dssp TTSCEECSSCCC----GGGH-HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEE
T ss_pred CCCeeEcCCCCC----CCCC-CHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeE
Confidence 467899999998 3443 556666553322 11 123679999998 999999999986 56777767 589
Q ss_pred EEeecccchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 153 ATVQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 153 ~~~~t~ggt~a~~l~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
++ |+|++++++++... .+.+|| +|++++|+|..|...++..|++++.++++. + +++ . +
T Consensus 95 ~~--t~G~~~al~~~~~~--l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~--~l~--------~---~ 156 (391)
T 3bwn_A 95 VV--GTGSTQLCQAAVHA--LSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDA-W--GFD--------K---K 156 (391)
T ss_dssp EE--EEHHHHHHHHHHHH--HHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEES-T--TCC--------C---C
T ss_pred EE--eCChHHHHHHHHHH--hcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCH-H--HcC--------C---C
Confidence 99 99999999998443 367999 999999999999999999999999999853 2 222 1 2
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (459)
+++++++++||||||.+++ +|++.+++++++||+||+|.. . . ...+ ....+++++++||||.||+
T Consensus 157 ~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~-~--~----~~~l---~~~~~~~i~~~S~SK~~g~ 221 (391)
T 3bwn_A 157 GPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW-P--H----YTPI---TRRQDHDIMLFTFSKITGH 221 (391)
T ss_dssp SCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS-T--T----TSCC---CCCBCCSEEEEEHHHHHSC
T ss_pred CCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC-C--C----CCcc---ccCCCCeEEEEechhhcCC
Confidence 6788888999999999996 354422223499999999973 1 1 0111 1134689999999999999
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHH-------HHHHHHHHHHHHHHHH
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW-------KAEMEMMAGRIKNVRQ 381 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-------~~~~~~~~~~~~~~~~ 381 (459)
+|+|+||++ ++++++++.+.. .......+++.++|.++..+|+++. .| .++++++++.++++++
T Consensus 222 ~GlRiG~~~--~~~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (391)
T 3bwn_A 222 AGSRIGWAL--VKDKEVAKKMVE----YIIVNSIGVSKESQVRTAKILNVLK---ETCKSESESENFFKYGREMMKNRWE 292 (391)
T ss_dssp GGGCEEEEE--ECCHHHHHHHHH----HHHHHHSSCCHHHHHHHHHHHHHHH---HHTTCCCTTTSHHHHHHHHHHHHHH
T ss_pred CccceEEEE--ecCHHHHHHHHH----HhcccccCCCHHHHHHHHHHHhCcc---hhccccccHHHHHHHHHHHHHHHHH
Confidence 999999984 456775544443 3222334788899999988886542 11 3457899999999999
Q ss_pred HHHHHHhhccCCCCCccccc-------------CCcceeeecCCC-HHHHHHHHhcccEEEcCC-------C--cEEEcc
Q 012628 382 KLFDSLSAKDKSGKDWSFIL-------------RQIGMFSFTGLN-KAQSDNMTNKWHVYMTKD-------G--RISLAG 438 (459)
Q Consensus 382 ~l~~~L~~~~g~~~~~~~~~-------------~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~g-------g--Ris~~~ 438 (459)
.+.+.|+ +++ ++.+.. +++|+|+|+++. .+++..+++++||.+.|| + |||++.
T Consensus 293 ~l~~~L~-~~~---~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~ 368 (391)
T 3bwn_A 293 KLREVVK-ESD---AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLS 368 (391)
T ss_dssp HHHHHHH-TCS---SEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCS
T ss_pred HHHHHHH-hCC---CcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecC
Confidence 9999999 762 134432 356678998764 345667777789999985 2 999998
Q ss_pred CChhhHHHHHHHHHHHHhh
Q 012628 439 LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 439 ~~~e~i~~~~~~l~~~~~~ 457 (459)
+++++++++++|++++++
T Consensus 369 -~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 369 -REDVFNVFLERLANMKLI 386 (391)
T ss_dssp -CHHHHHHHHHHHHSCC--
T ss_pred -CHHHHHHHHHHHHHHHHh
Confidence 899999999999987754
No 79
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=2.8e-37 Score=300.50 Aligned_cols=309 Identities=16% Similarity=0.165 Sum_probs=238.1
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
++.|+|+.|.+ ..+ .++.+.+++.+.+.......|+ ..+.+++|+++++++... .+++++|++ |+|+++
T Consensus 19 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~---~~~~~~v~~--~~G~~~ 87 (335)
T 1uu1_A 19 RDKTYLALNEN----PFP-FPEDLVDEVFRRLNSDALRIYY-DSPDEELIEKILSYLDTD---FLSKNNVSV--GNGADE 87 (335)
T ss_dssp CCSEEESSCCC----SSC-CCHHHHHHHHHTCCGGGGGSCC-CSSCHHHHHHHHHHHTCS---SCCGGGEEE--ESSHHH
T ss_pred CcceECCCCCC----CCC-CCHHHHHHHHHHhhhhhhhcCC-CCchHHHHHHHHHHcCCC---CCCHHHEEE--cCChHH
Confidence 36899999986 333 3889999999887322235674 457999999999998643 344789999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT 242 (459)
+++++.+ .+ ||+|+++ |+|..+...++..|++++.+|++ +++.+|++++ + +++++++++|||||
T Consensus 88 al~~~~~---~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~---~~~~v~l~~p~npt 151 (335)
T 1uu1_A 88 IIYVMML---MF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----G---EGDVVFIPNPNNPT 151 (335)
T ss_dssp HHHHHHH---HS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----C---TTEEEEEESSCTTT
T ss_pred HHHHHHH---Hh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----C---CCCEEEEeCCCCCC
Confidence 9999833 34 8999999 99999999999999999999983 4578888877 2 57788889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012628 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~ 322 (459)
|.+++.+++++|+++| | ++|+||+|.++...+ .. .+.+..+++++++||||.+|++|+|+||+++ +
T Consensus 152 G~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~----~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---~ 217 (335)
T 1uu1_A 152 GHVFEREEIERILKTG---A-FVALDEAYYEFHGES----YV---DFLKKYENLAVIRTFSKAFSLAAQRVGYVVA---S 217 (335)
T ss_dssp CCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC----CG---GGGGTCSSEEEEEESTTTTTCGGGCCEEEEE---C
T ss_pred CCCCCHHHHHHHHHhC---C-EEEEECcchhhcchh----HH---HHhhhCCCEEEEecchhhcCCcccCeEEEEe---C
Confidence 9999999999988877 7 899999998876421 11 1234456899999999999999999999976 8
Q ss_pred hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012628 323 SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR 402 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 402 (459)
++.++.+ ...... + +++.++|.++..+|++.+ ++++.+++++++++++.+.|+ ++| +.+. +
T Consensus 218 ~~~~~~l----~~~~~~-~-~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~-~ 278 (335)
T 1uu1_A 218 EKFIDAY----NRVRLP-F-NVSYVSQMFAKVALDHRE-------IFEERTKFIVEERERMKSALR-EMG----YRIT-D 278 (335)
T ss_dssp HHHHHHH----HHHSCT-T-CSCHHHHHHHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHH-HHT----CCBC-C
T ss_pred HHHHHHH----HHhcCC-C-CcCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHH-HCC----cEEc-C
Confidence 8844443 333222 3 678888888888886532 356778889999999999999 776 4544 4
Q ss_pred CcceeeecCCC---H-HHHHHHHhcccEEEcCCC---cEEEccCChhhHHHHHHHHHHH
Q 012628 403 QIGMFSFTGLN---K-AQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDS 454 (459)
Q Consensus 403 ~~g~f~~~~l~---~-~~~~~ll~~~gI~v~~gg---Ris~~~~~~e~i~~~~~~l~~~ 454 (459)
.+++|+|+.+. . ++.+.|.+ +||.+.++. |||++ +++++++++++|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~iRis~~--~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 279 SRGNFVFVFMEKEEKERLLEHLRT-KNVAVRSFREGVRITIG--KREENDMILRELEVF 334 (335)
T ss_dssp CCSSEEEEECCTHHHHHHHHHHHH-HTEEEEEETTEEEEECC--CHHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCCCCHHHHHHHHHH-CCEEEEECCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 45778887664 2 34556665 699998753 99986 467899999998754
No 80
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=1.1e-37 Score=313.14 Aligned_cols=327 Identities=11% Similarity=0.066 Sum_probs=246.2
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhh-cCC-CCCCCCCc-c---cHHHHHHHHHHHhcCCCCccccCceEEee
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGE-NKEYLPIE-G---LAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~-~~~Y~~~~-g---~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (459)
+.+|+|+.|+| .+++ ++.+.+++.+.+. .+. ...|++.. | .++||++|++++...++..+++++|++
T Consensus 56 ~~~i~l~~g~~----~~~~-~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~-- 128 (427)
T 2hox_A 56 GCSADVASGDG----LFLE-EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF-- 128 (427)
T ss_dssp TCCEECCSCCC----GGGH-HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred CceEEecCcCC----CCCC-CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence 47899999998 3443 6788888887763 222 13498888 9 999999999999876666677899999
Q ss_pred cccchhHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 157 GLSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
|+|++++++++ +... +.+||+|++++|+|..|...++..|++++.+. +|++.|++++++
T Consensus 129 t~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~~--- 195 (427)
T 2hox_A 129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSNP--- 195 (427)
T ss_dssp ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSCG---
T ss_pred eCCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec--------CCHHHHHHhhcC---
Confidence 99999999998 4444 67999999999999999999999999987543 467788777754
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (459)
+++++++++||||||.+++ +. ++ ++..+.|++|.+ .. .++..+ . .+++++++||||.+|+
T Consensus 196 ~~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~-~~-------~s~~~~-~-~~~~i~~~S~SK~~g~ 255 (427)
T 2hox_A 196 EQYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW-PH-------YTPIKY-K-ADEDILLFTMSKFTGH 255 (427)
T ss_dssp GGEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS-TT-------TSCCCS-C-BCCSEEEEEHHHHTSC
T ss_pred CceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC-CC-------CCcccc-C-CCceEEEEeChhcCCC
Confidence 6788888999999999999 42 22 566778877643 10 111111 1 4689999999999999
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh-hHH----HHHHHHHHHHHHHHHHHHHH
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFD----EWKAEMEMMAGRIKNVRQKL 383 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~----~~~~~~~~~~~~~~~~~~~l 383 (459)
+|+|+||+++ +++++++.+.. .......+++.++|.++..+|++.. +.+ .|++++++.+++++++++++
T Consensus 256 ~G~RiG~~~~--~~~~l~~~l~~----~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 256 SGSRFGWALI--KDESVYNNLLN----YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp GGGCCEEEEE--CCHHHHHHHHH----HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEE--CCHHHHHHHHH----HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999954 45775554443 3333345788999998888886531 110 12356778899999999999
Q ss_pred HHHHhhcc-CC-------CC---CcccccCCcceeeecCCC---HHHHHHHHhcccEEEcCC-------C--cEEEccCC
Q 012628 384 FDSLSAKD-KS-------GK---DWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD-------G--RISLAGLS 440 (459)
Q Consensus 384 ~~~L~~~~-g~-------~~---~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~ 440 (459)
.+.|+ ++ |+ |. .+.+..|++|+|+|+++. .++++.+++++||.++|| + |||++. +
T Consensus 330 ~~~L~-~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~-~ 407 (427)
T 2hox_A 330 TALLD-QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-T 407 (427)
T ss_dssp HHHHT-TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-C
T ss_pred HHHHH-hCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC-C
Confidence 99999 76 32 11 033456778999998774 346788887789999986 2 999998 8
Q ss_pred hhhHHHHHHHHHHHHhh
Q 012628 441 LAKCEYLADAIIDSYHN 457 (459)
Q Consensus 441 ~e~i~~~~~~l~~~~~~ 457 (459)
++++++++++|++++++
T Consensus 408 ~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 408 QDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998864
No 81
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=9.9e-36 Score=291.21 Aligned_cols=312 Identities=13% Similarity=0.117 Sum_probs=236.0
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
+++|||+.|.+ ..+ .++.+.+++.+.+.. ...|++..+ +++|+++++++. +++++|++ |+|+++
T Consensus 15 ~~~id~~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~--t~g~~~ 78 (350)
T 3fkd_A 15 SEIVNFSTTVW----TDG-DKDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRNS------VDNNAILV--TNGPTA 78 (350)
T ss_dssp -CCEECSCCSC----CCS-CCHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHTT------CCGGGEEE--ESHHHH
T ss_pred ccEEEccCCCC----CCC-CCHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCHHH
Confidence 68999999986 444 388999999888733 367876666 899999999974 23789999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeee-ecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~-~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
+++++.+. +. ||+|+++.|+|..+...++..|++++.+|+ ++. .++++ + +++++++++||||
T Consensus 79 al~~~~~~---l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~--------~---~~~~v~i~~p~np 141 (350)
T 3fkd_A 79 AFYQIAQA---FR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI--GEADF--------S---NMDFCWLCNPNNP 141 (350)
T ss_dssp HHHHHHHH---TT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG--GGSCC--------T---TCSEEEEESSCTT
T ss_pred HHHHHHHH---HC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc--ccCcc--------C---CCCEEEEeCCCCC
Confidence 99998433 34 999999999999999999999999999998 432 23443 2 5667778999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
||.+++.+++++|++.|+++ ++|+||+|.++.+.+.. . . ...+..+++++++||||.+|++|+|+||+++
T Consensus 142 tG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~--~-~--~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--- 211 (350)
T 3fkd_A 142 DGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI--R-P--ADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA--- 211 (350)
T ss_dssp TCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC--C-G--GGGTTCSSEEEEEESHHHHSCGGGCCEEEEC---
T ss_pred cCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch--h-h--HHhhcCCCEEEEecCchhccCcchheEeEEe---
Confidence 99999999999999988765 99999999998865321 1 1 2234567899999999999999999999965
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 400 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 400 (459)
+++ +.+.+..... ..+++.++|.++..+|++.+ +. ++.++.. ++++++.+.|+ +++ ++.+.
T Consensus 212 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~-~~~~~l~~~L~-~~~---~~~~~ 273 (350)
T 3fkd_A 212 NKD----FMKRVAAFST--PWAVNALAIEAAKFILIHPAQFT-------LPIRKWQ-RNTVDFITALN-RLD---GVEVH 273 (350)
T ss_dssp CHH----HHHHHHTTCC--TTCSCHHHHHHHHHHHHCTTTTC-------CCHHHHH-HHHHHHHHHHH-HST---TEEEC
T ss_pred CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCHHHHH-------HHHHHHH-HHHHHHHHHHh-cCC---CcEEC
Confidence 888 4444444332 23678888888888887654 32 2333333 78889999998 772 15665
Q ss_pred cCCcceeeecCC---C-HHHHHHHHhcccEEEcCCC----------cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 401 LRQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 401 ~~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
++. +.|+|+.+ + .++.++|++++||.+.+|. |||++ +++++++++++|++++++.
T Consensus 274 ~~~-~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 274 PSG-TTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp CCS-SSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC-
T ss_pred CCC-CcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHh
Confidence 555 44555433 3 3556777775799998862 99987 6788999999999988753
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=3.5e-33 Score=277.95 Aligned_cols=329 Identities=11% Similarity=0.028 Sum_probs=240.6
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+++.|||+.|.|. +.+ .++.+.+++.+.+... ....|.+..|..++++++++++....+ .+++++ |+|
T Consensus 42 g~~~idl~~~~~~---~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~--~~g 111 (398)
T 3a2b_A 42 GRRVLMFGSNSYL---GLT-TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAIL--FST 111 (398)
T ss_dssp TEEEEECSCSCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEE--ESS
T ss_pred CceEEEeeccccc---CCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEE--ECC
Confidence 3568999999761 332 3788999988877532 123455667777777777777665544 257888 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC-CcEEEEeCCC
Q 012628 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILLHGCA 238 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~ii~~~p 238 (459)
|++++.++. ...+.+||+|++++|+|..+...++..|++++.+|+ +|++.+++.+++..+ +++++++++|
T Consensus 112 gt~a~~~~~--~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~ 182 (398)
T 3a2b_A 112 GFQSNLGPL--SCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGI 182 (398)
T ss_dssp HHHHHHHHH--HHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred HHHHHHHHH--HHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCC
Confidence 999999983 334679999999999999999999999999998875 589999999986322 5788889999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEEEcCCcCcccCCCCcceEE
Q 012628 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGAMN 317 (459)
Q Consensus 239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~RiG~~~ 317 (459)
|||||.+++ +++|.++|++||+++|+||+|..+.++. ...++....+..++ +++++||||.++++| ||++
T Consensus 183 ~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~ 253 (398)
T 3a2b_A 183 FSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGH---KGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVA 253 (398)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEE
T ss_pred CCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCC---CCCchHhhcCCCcCCeEEEecccccccCCC---cEEE
Confidence 999999965 7889999999999999999998876531 11122122222234 699999999999888 9986
Q ss_pred EEeCChhHHHHHHHHHHhhccccccCCchHHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012628 318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARI-VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 396 (459)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 396 (459)
+ +++.++.+...... ....+.+...|.+ +...|++. +++++.+++++++++++.+.|+ ++|
T Consensus 254 ~---~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g---- 315 (398)
T 3a2b_A 254 G---DADVIDFLKHNARS---VMFSASMTPASVASTLKALEII-------QNEPEHIEKLWKNTDYAKAQLL-DHG---- 315 (398)
T ss_dssp E---CHHHHHHHHHHCHH---HHSSBCCCHHHHHHHHHHHHHH-------HHCTHHHHHHHHHHHHHHHHHH-HTT----
T ss_pred e---CHHHHHHHHHhccc---ceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHH-hcC----
Confidence 6 77755554432111 1222344445543 33444321 2356788999999999999999 876
Q ss_pred cccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC---------C--cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 397 WSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 397 ~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
+++..+. |+|+|+.+. .++.++|+++ ||.+.++ + ||+++. .+++++++++++|+++++++
T Consensus 316 ~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 316 FDLGATE-SPILPIFIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 5666666 577777653 2446677775 9999875 2 999986 48999999999999998764
No 83
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=4.7e-32 Score=271.31 Aligned_cols=327 Identities=12% Similarity=0.079 Sum_probs=237.6
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcC------CCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVAT 154 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~ 154 (459)
+++|+|+.|.+ + +.++.+.+++.+.+... ..+.|++ ..+.+++|+++++++... +++++++
T Consensus 27 ~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~ 95 (420)
T 1t3i_A 27 HPLVYLDNAAT----S--QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY 95 (420)
T ss_dssp EECEECBTTTC----C--CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE
T ss_pred CceEEecCCcc----C--CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE
Confidence 34899999987 3 24789999998887541 1234543 477899999999997542 2688999
Q ss_pred eecccchhHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 155 VQGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 155 ~~t~ggt~a~~l~~~~~~--~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
|+||+++++++...+. .+.+||+|++++|+|.. +...++..|++++.+|++ +++.+|++.+++++++
T Consensus 96 --~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~--- 168 (420)
T 1t3i_A 96 --TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSE--- 168 (420)
T ss_dssp --ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCT---
T ss_pred --cCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCC---
Confidence 9999999999844331 15799999999999998 566777889999999984 4677999999999975
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (459)
+++++++++|+||||.+++ +++|.++|++||+++|+|++|...... . .+..+ +.++++.|+||.+|+
T Consensus 169 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~---~~~~~----~~di~~~s~sK~~~~ 235 (420)
T 1t3i_A 169 KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---L---DVQLI----DCDWLVASGHKMCAP 235 (420)
T ss_dssp TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CHHHH----TCSEEEEEGGGTTSC
T ss_pred CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---C---chhhc----CCCEEEEehhhhcCC
Confidence 7888899999999999977 788999999999999999998754321 1 12111 357889999999998
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhhccc--------------------cccCCchHHHHHHHH-HhCChhhHHHHHH
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRLARP--------------------MYSNPPVHGARIVAN-VVGNPALFDEWKA 367 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~L~~~~~~~~~~~ 367 (459)
+| +||+++ +++.. +.+...... ...+.+.+.+.++.. .++ +.. ..
T Consensus 236 ~g--~G~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~--~~ 301 (420)
T 1t3i_A 236 TG--IGFLYG---KEEIL----EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD---YLT--DL 301 (420)
T ss_dssp TT--CEEEEE---CHHHH----HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--HH
T ss_pred Cc--eEEEEE---chHHH----hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHH---HHH--Hh
Confidence 88 899876 77743 333322111 112344555554432 221 110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC------cceeeec--CCCHHHHHHHHhcccEEEcCC--------
Q 012628 368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ------IGMFSFT--GLNKAQSDNMTNKWHVYMTKD-------- 431 (459)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~------~g~f~~~--~l~~~~~~~ll~~~gI~v~~g-------- 431 (459)
.+++++++++++++++.+.|+ +++ ++++..+. ++++.|. +.+.+.+.+.++++||.+.+|
T Consensus 302 ~~~~~~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 377 (420)
T 1t3i_A 302 GMENIHNYEVELTHYLWQGLG-QIP---QLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLH 377 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TCT---TEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCC---CeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHH
Confidence 357788899999999999999 762 15666553 6666553 234444445556679999887
Q ss_pred -----C---cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 432 -----G---RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 -----g---Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
. ||+++.. +++++++++++|+++++++
T Consensus 378 ~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 378 RLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 9998863 8899999999999998765
No 84
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=3.3e-32 Score=269.06 Aligned_cols=320 Identities=13% Similarity=0.093 Sum_probs=227.9
Q ss_pred CCCCCCccCcHHHHHHHHHHhhcCCC-----C--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHH
Q 012628 94 RTEELQPYVLDVVKKAENLMLERGEN-----K--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL 166 (459)
Q Consensus 94 ~~~~~~~~~~~~v~~a~~~~~~~~~~-----~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l 166 (459)
+|.+..++.++.+.+++.+.+..... + .|.+..+.+++|+++++++.. ++++|++ |+||++++++
T Consensus 5 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--~~g~t~a~~~ 76 (384)
T 1eg5_A 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGV------SPSEIFF--TSCATESINW 76 (384)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTS------CGGGEEE--ESCHHHHHHH
T ss_pred EecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCC------CCCeEEE--ECCHHHHHHH
Confidence 34434445589999999998864210 1 133456779999999999742 2678999 9999999999
Q ss_pred HHHHHHH--hCCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 167 AAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 167 ~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
+...+.. ..+||+|++++|+|..+...+ +..|++++.+|++ .++.+|++.+++++++ +++++++++|+||
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~np 151 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVDE---DTFLVSIMAANNE 151 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCCT---TEEEEEEESBCTT
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC--CCCccCHHHHHHHhCC---CCeEEEEECCCCC
Confidence 8554421 169999999999999886655 6789999999984 4577999999999875 6888888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC--CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 242 TGIDPTPEQWEKIADVIQEKN--HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~--~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
||.+++ +++|.++|++|| +++|+||+|. ++.... .+ ...+.++++.|+||.+|++| +||+++
T Consensus 152 tG~~~~---~~~i~~l~~~~~~~~~li~Dea~~-~~~~~~-----~~----~~~~~di~~~s~sK~~g~~G--~G~~~~- 215 (384)
T 1eg5_A 152 VGTIQP---VEDVTRIVKKKNKETLVHVDAVQT-IGKIPF-----SL----EKLEVDYASFSAHKFHGPKG--VGITYI- 215 (384)
T ss_dssp TCBBCC---HHHHHHHHHHHCTTCEEEEECTTT-TTTSCC-----CC----TTTCCSEEEEEGGGGTSCTT--CEEEEE-
T ss_pred cccccC---HHHHHHHHHhcCCceEEEEEhhhh-cCCccc-----Cc----hhcCCCEEEecHHHhcCCCc--eEEEEE-
Confidence 999987 578999999999 9999999976 332111 11 12246789999999999888 799966
Q ss_pred eCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012628 320 CSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 396 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 396 (459)
+++. .+...+... ......+++..++.++...|+. +.+++++.+++++++++++.+.|+ +.|
T Consensus 216 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L~-~~g---- 280 (384)
T 1eg5_A 216 --RKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI------AVEELSEAAKHMEKLRSKLVSGLM-NLG---- 280 (384)
T ss_dssp --CTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHH-TTT----
T ss_pred --cCCC--ccccccccCcccccccCCCCChHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHhC-CCC----
Confidence 5552 011111110 0112335677777766655543 133467889999999999999999 755
Q ss_pred cccccCC-c---c--eeeecCCCHHH-HHHHHhcccEEEcCC-------------------------C--cEEEcc-CCh
Q 012628 397 WSFILRQ-I---G--MFSFTGLNKAQ-SDNMTNKWHVYMTKD-------------------------G--RISLAG-LSL 441 (459)
Q Consensus 397 ~~~~~~~-~---g--~f~~~~l~~~~-~~~ll~~~gI~v~~g-------------------------g--Ris~~~-~~~ 441 (459)
+++..+. + + .|.+.+.+.+. .+.| .++||.+.+| + ||+++. .++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 359 (384)
T 1eg5_A 281 AHIITPLEISLPNTLSVSFPNIRGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359 (384)
T ss_dssp CEECSCTTSBCTTEEEEECTTCCHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred eEEeCCcccCCCCEEEEEeCCCCHHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence 4554432 1 1 22333455544 4555 5579999873 2 999884 389
Q ss_pred hhHHHHHHHHHHHHhhc
Q 012628 442 AKCEYLADAIIDSYHNV 458 (459)
Q Consensus 442 e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++|+++++++
T Consensus 360 ~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 360 EEVDYFLKKIEEILSFL 376 (384)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998865
No 85
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=7.9e-32 Score=268.34 Aligned_cols=327 Identities=13% Similarity=0.085 Sum_probs=235.8
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CC------CCCCCcccHHHHHHHHHHHhcCCCCccccCceEE
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NK------EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT 154 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~------~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~ 154 (459)
++++.|+.+.+ + +.++.+.+++.+.+.... .+ .|.+..+..++|+++++++... ++++|++
T Consensus 22 ~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~ 90 (406)
T 1kmj_A 22 LPLAYLDSAAS----A--QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF 90 (406)
T ss_dssp EECEECCTTTC----C--CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE
T ss_pred CceEEecCCcc----C--CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE
Confidence 35788988876 3 247889999988875421 11 1235678899999999997542 2688999
Q ss_pred eecccchhHHHHHHHHHHH--hCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 155 VQGLSGTGSLRLAAALIER--YFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 155 ~~t~ggt~a~~l~~~~~~~--~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
|+|++++++++.+.+.. +.+||+|++++|+|.. |...++..|++++.+|++ +++.+|++.+++++++
T Consensus 91 --~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~--- 163 (406)
T 1kmj_A 91 --VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFDE--- 163 (406)
T ss_dssp --ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCCT---
T ss_pred --eCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC--CCCCcCHHHHHHHhcc---
Confidence 99999999998443311 5799999999999865 344567789999999984 4577999999999975
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (459)
+++++++++|+||||.+++ +++|.++|++||+++|+||+|...... . .+. ..+.++++.|+||.+|+
T Consensus 164 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~---~---~~~----~~~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 164 KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP---V---DVQ----ALDCDFYVFSGHKLYGP 230 (406)
T ss_dssp TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CHH----HHTCSEEEEEGGGTTSC
T ss_pred CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC---C---ccc----ccCCCEEEEEchhccCC
Confidence 7888899999999999987 788999999999999999998754321 1 111 12467889999999998
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhhcc---------------------ccccCCchHHHHHHH-HHhCChhhHHHHH
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRLAR---------------------PMYSNPPVHGARIVA-NVVGNPALFDEWK 366 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~~L~~~~~~~~~~ 366 (459)
+| +||+++ +++.+ +.+..... ....+.+.+.+.++. ..++ +.. .
T Consensus 231 ~G--~G~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~--~ 296 (406)
T 1kmj_A 231 TG--IGILYV---KEALL----QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE---YVS--A 296 (406)
T ss_dssp TT--CEEEEE---CHHHH----HHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHH---HHH--H
T ss_pred CC--cEEEEE---eHHHH----hhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHH---HHH--H
Confidence 88 899976 77743 33332211 011233445555443 2222 110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC--Ccceeeec--CCCHHHHHHHHhcccEEEcCC-----------
Q 012628 367 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--GLNKAQSDNMTNKWHVYMTKD----------- 431 (459)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g----------- 431 (459)
..+++.+++++++++++.+.|+ +++ ++++..+ .++++.|. +.+.+.+.+.+.++||.+.+|
T Consensus 297 ~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~ 372 (406)
T 1kmj_A 297 LGLNNIAEYEQNLMHYALSQLE-SVP---DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY 372 (406)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHT-TST---TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHHh-cCC---CeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhc
Confidence 2356788899999999999999 762 2666666 77777663 334444444555579998753
Q ss_pred ---C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 432 ---G--RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 ---g--Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
+ ||+++.. +++++++++++|+++++.+
T Consensus 373 g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 373 NVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 3 9999865 8899999999999998865
No 86
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4e-31 Score=262.89 Aligned_cols=328 Identities=11% Similarity=0.050 Sum_probs=229.9
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC------CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
+.+.|||+.|.|+ +. ..++.+.+++.+.+... ....|++..+..++|+.+++++.. ++.|++
T Consensus 42 g~~~id~~~~~~~---g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~- 109 (399)
T 3tqx_A 42 EKEVLNFCANNYL---GL-ADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------DDTILY- 109 (399)
T ss_dssp TEEEEECSSCCTT---SC-TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CeeEEEeeccCcc---cc-cCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------CcEEEE-
Confidence 4578999999662 22 23788888888777431 111233455679999999999743 345555
Q ss_pred ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC---CcEE
Q 012628 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI 232 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~ 232 (459)
+ +|++++.++ +...+.+||+|+++.|+|..+...++..|++++.+|. +|++.+++.+++... ++++
T Consensus 110 -~-sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 110 -S-SCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp -S-CHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred -C-chHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence 4 558888887 3444679999999999999999999999999988876 367788888775322 6889
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCC
Q 012628 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAE 311 (459)
Q Consensus 233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~ 311 (459)
+++++|+||||.+++ +++|+++|++||+++|+||+|....++. +..+.....+ ..+.+++++||||.++ |+
T Consensus 179 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~--g~ 250 (399)
T 3tqx_A 179 IATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE---NGRGTPEYCGVADRVDILTGTLGKALG--GA 250 (399)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST---TSCCHHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred EEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCchHHhhCCCCCCcEEEecchHhcc--cC
Confidence 999999999999977 7899999999999999999985322221 1111212222 1245799999999998 34
Q ss_pred CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 312 RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
+.||+++ +++.++.+........ ...+.+...+.++...++.. .+++++.+++++++++++.+.|+ ++
T Consensus 251 ~gG~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~ 318 (399)
T 3tqx_A 251 SGGYTSG---HKEIIEWLRNRSRPYL--FSNTVAPVIVATSLKVLELL------KTEGPQLRKQLQENSRYFRAGME-KL 318 (399)
T ss_dssp CCEEEEE---CHHHHHHHHHHCHHHH--SSCCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred ceEEEEc---CHHHHHHHHHhCccee--ccCCCcHHHHHHHHHHHHHH------hhccHHHHHHHHHHHHHHHHHHH-Hc
Confidence 4599876 8886655544322111 12234444444444443211 13467889999999999999999 88
Q ss_pred CCCCCcccccCCcceeeecCC-----CHHHHHHHHhcccEEEcCC-------C----cEEEc-cCChhhHHHHHHHHHHH
Q 012628 392 KSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------G----RISLA-GLSLAKCEYLADAIIDS 454 (459)
Q Consensus 392 g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------g----Ris~~-~~~~e~i~~~~~~l~~~ 454 (459)
| +++..+.++ |+|+.+ ..++.++|++ +||.+.++ + ||+++ ..+++++++++++|+++
T Consensus 319 g----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 392 (399)
T 3tqx_A 319 G----FQLVPGNHP-IIPVMLGDAQLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQV 392 (399)
T ss_dssp T----CCBCCCSSS-EEEEEEECHHHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred C----CCcCCCCCC-EEEEEeCCHHHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHH
Confidence 7 566666655 455433 2345667776 59999843 2 99987 34899999999999999
Q ss_pred Hhhc
Q 012628 455 YHNV 458 (459)
Q Consensus 455 ~~~~ 458 (459)
++++
T Consensus 393 ~~~~ 396 (399)
T 3tqx_A 393 GKKL 396 (399)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 87
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.98 E-value=2e-31 Score=263.79 Aligned_cols=318 Identities=13% Similarity=0.063 Sum_probs=228.1
Q ss_pred CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012628 98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177 (459)
Q Consensus 98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g 177 (459)
+..++++.+.+++.+.+. ..|++. ..++++++++++....|.+ +++++++ |+||++++.++.. ..+.+|
T Consensus 27 ~~~~~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~~~--~l~~~g 95 (386)
T 2dr1_A 27 GPVACFPEVLEIMKVQMF----SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEASIR--NGVSKG 95 (386)
T ss_dssp SSCCCCHHHHHHTTSCCC----CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHHHH--HHSCTT
T ss_pred CCcCCcHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHHHH--HhhcCC
Confidence 444557888888766542 345432 2456666666555444443 3567888 9999999999843 346799
Q ss_pred CEEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012628 178 AKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA 255 (459)
Q Consensus 178 d~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~ 255 (459)
|+|++++|+|.. +...++..|++++.+|++ .++.+|++++++++++. ++++++++++|+||||.+. ++++|.
T Consensus 96 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~---~l~~i~ 169 (386)
T 2dr1_A 96 GKVLVTIIGAFGKRYKEVVESNGRKAVVLEYE--PGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLN---PLPELA 169 (386)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC---CHHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCceEEEecC--CCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhC---CHHHHH
Confidence 999999999988 888889999999999984 35779999999999642 2567788889999999995 478899
Q ss_pred HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH----
Q 012628 256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS---- 331 (459)
Q Consensus 256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~---- 331 (459)
++|++||+++|+||+|..+... . . ....+.++++.|+||.++.++ ++||+++ +++.++.+..
T Consensus 170 ~l~~~~~~~li~D~a~~~~~~~-~-----~----~~~~~~di~~~s~sK~~~~~~-g~G~~~~---~~~~~~~~~~~~~~ 235 (386)
T 2dr1_A 170 KVAKEHDKLVFVDAVSAMGGAD-I-----K----FDKWGLDVVFSSSQKAFGVPP-GLAIGAF---SERFLEIAEKMPER 235 (386)
T ss_dssp HHHHHTTCEEEEECTTTBTTBC-C-----C----TTTTTCSEEEEETTSTTCCCS-SCEEEEE---CHHHHHHHTTCTTC
T ss_pred HHHHHcCCeEEEEccccccCcc-c-----c----ccccCCcEEEEeccccccCCC-ceEEEEE---CHHHHHHHhcCCCC
Confidence 9999999999999998765432 1 1 122346899999999998652 3899976 7775554421
Q ss_pred --------HHHhh--ccccccCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012628 332 --------QLKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF 399 (459)
Q Consensus 332 --------~~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 399 (459)
.+... ......+++..++.++...|+. +.+ .+++.+++++++++++.+.|+ ++| +++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~g~~~~~~~~~~~~~~~l~~~L~-~~g----~~~ 304 (386)
T 2dr1_A 236 GWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRI------IEKMGGKEKWLEMYEKRAKMVREGVR-EIG----LDI 304 (386)
T ss_dssp CSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHHH-HTT----CCB
T ss_pred ceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHHHH-HcC----Cee
Confidence 11111 1122335667777766555532 122 267888999999999999999 776 455
Q ss_pred ccCC---cceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 400 ILRQ---IGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 400 ~~~~---~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
..++ .+.++|+. .+. ++.++|.++ ||.+.+| + ||+++. .+++++++++++|+++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 305 LAEPGHESPTITAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp SSCTTCBCSSEEEEECCTTCCHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCccccCCceEEEEcCCCCCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5554 24555543 344 456677775 9999885 2 999985 48999999999999998764
No 88
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.98 E-value=1.7e-30 Score=258.99 Aligned_cols=315 Identities=13% Similarity=0.071 Sum_probs=220.5
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccH---HHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLA---AFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~---~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+..++++|.| |....+++.+.+.+++..+......+.|++ .|.+ ++++++++++.. +++++ ++||
T Consensus 19 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~--------~~~i~--~~~g 86 (404)
T 1e5e_A 19 KDQFGAAIPP-IYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEKT--------EACVA--TSSG 86 (404)
T ss_dssp CCTTCCSSCC-CCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHTC--------SEEEE--ESSH
T ss_pred CCCCCCcCCC-CcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhCC--------CcEEE--eCCh
Confidence 3457888888 555555555666555543222222367866 5666 899999999743 35666 7888
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
++++.++ +...+.+||+|++++|+|..+.. .++..|++++.+|.+ |++++++++++ ++++++++
T Consensus 87 ~~ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~---~t~~v~l~ 154 (404)
T 1e5e_A 87 MGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKP---NTKIVYFE 154 (404)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCT---TEEEEEEE
T ss_pred HHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCC---CCcEEEEE
Confidence 9999998 34447799999999999999888 678899999998872 78899998875 78899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-c
Q 012628 237 CAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-G 314 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l~~~-~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G 314 (459)
+||||||.+++ +++|+++|++ +|+++|+||+|..+.+.. .+ ..+.++++.|+||.|+++|+|+ |
T Consensus 155 ~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~-----~~~~di~~~S~sK~~~~~g~ri~G 220 (404)
T 1e5e_A 155 TPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV-----DFGVDVVVHSATKYINGHTDVVAG 220 (404)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCE
T ss_pred CCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc-----ccCCEEEEEcCccccCCCCCCeEE
Confidence 99999999974 8899999999 999999999999887531 11 1257899999999999999998 9
Q ss_pred eEEEEeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-
Q 012628 315 AMNVVCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK- 392 (459)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g- 392 (459)
|+++ +++.++ +.+....... ..+.+.+.+.++...|++. ....++..++.+.+.+.|+ +.+
T Consensus 221 ~~~~---~~~~~~---~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~-~~~~ 283 (404)
T 1e5e_A 221 LICG---KADLLQ---QIRMVGIKDITGSVISPHDAWLITRGLSTL----------NIRMKAESENAMKVAEYLK-SHPA 283 (404)
T ss_dssp EEEE---CHHHHH---HHHHTCCCCCCCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHH-TCTT
T ss_pred EEEE---CHHHHH---HHHHHHHHhCCCCCCCHHHHHHHHHhHhHH----------HHHHHHHHHHHHHHHHHHH-hCCC
Confidence 9876 766332 1444444333 3356777777777777643 1222333344444444454 321
Q ss_pred -----CC-----CCcccccCC----cceeeecCCC--HHHHHHHHhcccEEEcC--------------------------
Q 012628 393 -----SG-----KDWSFILRQ----IGMFSFTGLN--KAQSDNMTNKWHVYMTK-------------------------- 430 (459)
Q Consensus 393 -----~~-----~~~~~~~~~----~g~f~~~~l~--~~~~~~ll~~~gI~v~~-------------------------- 430 (459)
.+ +++++..++ ++++.| .+. .+.+.+++++.||.+..
T Consensus 284 v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~ 362 (404)
T 1e5e_A 284 VEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEER 362 (404)
T ss_dssp EEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHH
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHH
Confidence 00 013333343 788888 443 25577788878874322
Q ss_pred ---C---C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 431 ---D---G--RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 431 ---g---g--Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
| | |||++. |+++.++++|+++++.
T Consensus 363 ~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 363 EAAGITDGMIRLSVGI---EDADELIADFKQGLDA 394 (404)
T ss_dssp HHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 1 3 999975 8899999999988865
No 89
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.98 E-value=1.3e-31 Score=263.69 Aligned_cols=324 Identities=12% Similarity=0.018 Sum_probs=225.1
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--------CCCCCCCcccHHHHHH-HHHHHhcCCCCccccCce
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPIEGLAAFNKV-TAELLFGADNSVLKEQRV 152 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~Y~~~~g~~~lr~a-ia~~l~~~~~~~~~~~~i 152 (459)
.++++.|..|.+ ..+ +++.+.+++.+.+.... ...|.+..+..++|++ +++++.. + +|
T Consensus 6 ~~~~i~ld~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~-------~-~v 72 (371)
T 2e7j_A 6 TKDFINIDPLQT----GGK-LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-------D-VA 72 (371)
T ss_dssp --CCEECCHHHH----TCC-CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS-------S-EE
T ss_pred CCCcEEeccccc----CCC-CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC-------C-EE
Confidence 457888888765 223 38899999998775421 1335577899999999 9999643 2 78
Q ss_pred EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeee--eecCCCCCCCHHHHHHHHHcCC--C
Q 012628 153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYR--YYDPKTVGLDFEGMIADIKAAP--G 228 (459)
Q Consensus 153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~--~~~~~~~~~d~e~l~~~i~~~~--~ 228 (459)
++ |+|++++++++... .+.+||+|++++|+|..+...++..|++++.+| + +.++.+|++++++++++.. +
T Consensus 73 ~~--~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 73 RV--TNGAREAKFAVMHS--LAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp EE--ESSHHHHHHHHHHH--HCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTS
T ss_pred EE--eCChHHHHHHHHHH--HhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccC
Confidence 88 99999999998443 367999999999999999999999999999999 6 3457899999999998311 2
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (459)
+++++++++||||||.+++ +++|.++|++||+++|+||+|..+... . .+..+ +.+++++|+||.++.
T Consensus 147 ~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~---~---~~~~~----~~di~~~s~sK~~~~ 213 (371)
T 2e7j_A 147 EVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP---V---SLKEI----GADFIVGSGHKSMAA 213 (371)
T ss_dssp CEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC---C---CHHHH----TCSEEEEEHHHHSSC
T ss_pred CeEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC---C---Chhhc----CCCEEEecCCcCCCC
Confidence 6788999999999999976 478999999999999999998876532 1 12111 245899999999884
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhhccc-c------ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH--HHH
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRLARP-M------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI--KNV 379 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~--~~~ 379 (459)
|.|+||+++ +++.++. .+...... . ...++...+.++...++ +. .+ +..+++ +++
T Consensus 214 -~~~~G~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~---~~---~~~~~~~~~~~ 277 (371)
T 2e7j_A 214 -SGPIGVMGM---KEEWAEI---VLRRSEKYKNKEVELLGCTARGATIITLMASFP---HV---RE---RIKRWDEEVEK 277 (371)
T ss_dssp -CSSCEEEEE---CTTTTTT---TTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---HH---HH---HGGGHHHHHHH
T ss_pred -CCCcEEEEE---echhhhh---hccccccCcccccccccCCcCHHHHHHHHHHHH---HH---HH---HHHHHHHHHHH
Confidence 459999976 6663322 02222210 1 11223333333322221 10 11 556677 888
Q ss_pred HHHHHHHHhhccCCCCCcccccCC--cceeeecCC-CH-HHHHHHHhcccEEEcC--------C---C--c-EEEcc--C
Q 012628 380 RQKLFDSLSAKDKSGKDWSFILRQ--IGMFSFTGL-NK-AQSDNMTNKWHVYMTK--------D---G--R-ISLAG--L 439 (459)
Q Consensus 380 ~~~l~~~L~~~~g~~~~~~~~~~~--~g~f~~~~l-~~-~~~~~ll~~~gI~v~~--------g---g--R-is~~~--~ 439 (459)
++++.+.|+ ++| +++..+. .+.++|+.+ +. ++.+.|. ++||.+.| | + | |+++. .
T Consensus 278 ~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~ 351 (371)
T 2e7j_A 278 ARRFAAEME-KLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAK-GGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGL 351 (371)
T ss_dssp HHHHHHHHH-HTT----CEEESSSSCCSSEEEEECHHHHHHHHHSS-SGGGHHHHHHHHTTEECSCTTCCSEEEEECTTC
T ss_pred HHHHHHHHH-HcC----cEEecCCCccCceEEEECCCHHHHHHHHH-HCCEEEEeccccccccCCCCCceEEEEeeccCC
Confidence 999999998 775 5665553 244677665 33 3445555 57998865 2 2 9 99985 4
Q ss_pred ChhhHHHHHHHHHHHHhhcC
Q 012628 440 SLAKCEYLADAIIDSYHNVS 459 (459)
Q Consensus 440 ~~e~i~~~~~~l~~~~~~~~ 459 (459)
+++++++++++|++++++++
T Consensus 352 ~~~~i~~~~~~l~~~~~~~~ 371 (371)
T 2e7j_A 352 SDEEVDYVLNAFKEIIEKYS 371 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999998764
No 90
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.98 E-value=1e-30 Score=258.89 Aligned_cols=322 Identities=12% Similarity=0.073 Sum_probs=227.8
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC---CCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE---NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~---~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
+...+||+.|.+. +.+ .++.+.+++.+.+.. +. ...| ....+..++|+++++++.. ++.+++
T Consensus 38 g~~~id~~~~~~~---~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~- 105 (384)
T 1bs0_A 38 DRQYLNFSSNDYL---GLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY-------SRALLF- 105 (384)
T ss_dssp TEEEEECSCCCTT---SGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CceEEEeeccCcc---CCC-CCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence 3468999998641 322 378899999888754 21 1223 4557889999999999732 344544
Q ss_pred ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
.+|++++.++. ...+.+||.|+++.|+|..+...++..|++++.+|. .|++.+++.+++..++++++++
T Consensus 106 --~sGt~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 106 --ISGFAANQAVI--AAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp --SCHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred --CCcHHHHHHHH--HHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEE
Confidence 55589999874 334679999999999999999999999999988874 4789999999874334788889
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA 315 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 315 (459)
++||||||.+++ +++|.++|++||+++|+||+|..+.++. +...+....+. ..+++++||||.++++| ||
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~-~~di~~~s~sK~~~~~G---G~ 244 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKV-KPELLVVTFGKGFGVSG---AA 244 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTC-CCSEEEEESSSTTSSCC---EE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecC---CCCchHHhcCC-CCcEEEeeccchhhccC---cE
Confidence 999999999987 6789999999999999999987665321 01111122222 23489999999999877 99
Q ss_pred EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012628 316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDKSG 394 (459)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~ 394 (459)
+++ +++.++.+........ . ..+++.+++.++...|+.. .+ .+++.+++++++++++.+.|+ ++|
T Consensus 245 ~~~---~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~~l~~~L~-~~g-- 310 (384)
T 1bs0_A 245 VLC---SSTVADYLLQFARHLI-Y-STSMPPAQAQALRASLAVI------RSDEGDARREKLAALITRFRAGVQ-DLP-- 310 (384)
T ss_dssp EEE---CHHHHHHHHHHCHHHH-S-SBCCCHHHHHHHHHHHHHH------HSHHHHHHHHHHHHHHHHHHHHHT-TSS--
T ss_pred EEe---CHHHHHHHHHhchhhh-c-CCCCCHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHHHHHH-hcC--
Confidence 866 7886655544211111 1 1245666666655444321 11 346788899999999999999 876
Q ss_pred CCcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC---------C--cEEEccC-ChhhHHHHHHHHHHH
Q 012628 395 KDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAGL-SLAKCEYLADAIIDS 454 (459)
Q Consensus 395 ~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~~-~~e~i~~~~~~l~~~ 454 (459)
+++.+ .++.|+|+.+. .++.+.|.+ +||.+.++ + ||+++.. +++++++++++|+++
T Consensus 311 --~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 311 --FTLAD-SCSAIQPLIVGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp --CEECS-CCSSBCCEEEESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred --CcccC-CCCCEEEEEeCCHHHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 45554 44555565442 244566666 49999864 2 9998754 789999999999864
No 91
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.98 E-value=8e-31 Score=256.69 Aligned_cols=330 Identities=11% Similarity=0.028 Sum_probs=230.6
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
.+.+|+|+.+.+ + +.++.+.+++.+.+. .|.+..|..++++++++++....| .++++|++ |+||+
T Consensus 12 ~p~~i~l~~~~~----~--~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~t 76 (359)
T 1svv_A 12 KPKPYSFVNDYS----V--GMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGGT 76 (359)
T ss_dssp ---CEECSCSCS----S--CCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCHH
T ss_pred CCeeEEecCCCc----C--CCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCch
Confidence 356889987554 3 348999999998774 255555666777777776655444 33678999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC----CCCcEEEEe
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLH 235 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~--~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~~ii~ 235 (459)
++++++.+. .+.+||+|++++|+|..+.. .++..|++++.+|.+ ++.+|++.+++.+++. ..+++++++
T Consensus 77 ~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 77 QTNLIACSL--ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHHHHH--HCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred HHHHHHHHH--HhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 999998433 36799999999999998877 478899999999973 5789999999999862 112778888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC--CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG--SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (459)
++| ||||.+++.+++++|+++|++||+++|+||+|.++..+ +.......+.. ...+++.|++|..++ .++
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~s~~K~g~~--~~~ 223 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIAR-----LTDMFYIGATKAGGM--FGE 223 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHH-----HCSEEEEECTTTTCS--SCE
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhh-----cCCEEEEecccCCCC--Cce
Confidence 888 79999999999999999999999999999998544211 11111111111 124677899997553 447
Q ss_pred ceEEEEeCChhHHHHHHHHHHhhcccccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012628 314 GAMNVVCSSSDLAARVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 392 (459)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 392 (459)
|++++ +++.++.+...... ....+. +.+...+ +..+|.+.. +++.+++++++++++.+.|+ ..|
T Consensus 224 g~l~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~--------~~~~~~~~~~~~~~l~~~L~-~~~ 288 (359)
T 1svv_A 224 ALIIL---NDALKPNARHLIKQ-RGALMAKGWLLGIQ--FEVLMKDNL--------FFELGAHSNKMAAILKAGLE-ACG 288 (359)
T ss_dssp EEEEC---SGGGCTTHHHHHHH-TTCCCTTTHHHHHH--HHHHTSTTH--------HHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred EEEEE---cccHHHHHHHHHhc-CCcccccchhhHHH--HHHHHhhhh--------HHHHHHHHHHHHHHHHHHhc-cCC
Confidence 88755 67755544432211 111111 2222222 233455432 35678888999999999996 655
Q ss_pred CCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcC---CC----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 393 SGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK---DG----RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 393 ~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~---gg----Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
+++..+.+++|+|+.+..++.++|++++||.+.+ .+ ||+++. .+++++++++++|+++++++
T Consensus 289 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 289 ----IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ----CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ----eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 5677678889999888777888888866998743 22 998754 38999999999999988765
No 92
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=5.6e-31 Score=261.46 Aligned_cols=313 Identities=14% Similarity=0.098 Sum_probs=221.1
Q ss_pred cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccC-ceEEeecccchhHHHHHHHHHHHhCCCCE
Q 012628 101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAK 179 (459)
Q Consensus 101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~gd~ 179 (459)
++++.+.+++.+.+. ..|++. ..++++++++++....|. +++ +|++ |+||+++++++.. ..+.+||+
T Consensus 44 ~~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~--t~g~t~al~~~~~--~~~~~gd~ 111 (393)
T 1vjo_A 44 NAHPSVLQAMNVSPV----GHLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAV--SGTGTAAMEATIA--NAVEPGDV 111 (393)
T ss_dssp CCCHHHHHHHSSCCC----CTTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEE--SSCHHHHHHHHHH--HHCCTTCE
T ss_pred CCCHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEE--eCchHHHHHHHHH--hccCCCCE
Confidence 347889888877553 245432 345555555555444343 356 8999 9999999999843 34679999
Q ss_pred EEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012628 180 VLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (459)
Q Consensus 180 Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l 257 (459)
|++++|+|.. +...++..|++++.+|++ .++.+|++.+++++++. +++++++++|+||||.+++ +++|.++
T Consensus 112 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l 184 (393)
T 1vjo_A 112 VLIGVAGYFGNRLVDMAGRYGADVRTISKP--WGEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGEL 184 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred EEEEcCChhHHHHHHHHHHcCCceEEEecC--CCCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHHH
Confidence 9999999998 888999999999999984 35679999999999752 4557788999999999965 7789999
Q ss_pred HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH---HH
Q 012628 258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ---LK 334 (459)
Q Consensus 258 ~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~---~~ 334 (459)
|+++|+++|+||+|. ++... . . +...+.++++.|+||.++.+| |+||+++ +++.++.+... ..
T Consensus 185 ~~~~~~~li~Dea~~-~g~~~--~---~----~~~~~~di~~~s~sK~l~~~~-~~G~l~~---~~~~~~~~~~~~~~~~ 250 (393)
T 1vjo_A 185 CREFGTLLLVDTVTS-LGGVP--I---F----LDAWGVDLAYSCSQKGLGCSP-GASPFTM---SSRAIEKLQRRRTKVA 250 (393)
T ss_dssp HHHHTCEEEEECTTT-TTTSC--C---C----TTTTTCSEEECCSSSTTCSCS-SCEEEEE---CHHHHHHHHTCSSCCS
T ss_pred HHHcCCEEEEECCcc-ccCcC--C---c----ccccCccEEEEcCcccccCCC-ceEEEEE---CHHHHHHHhccCCCCC
Confidence 999999999999987 43211 1 1 122346788999999998777 9999977 77744443211 00
Q ss_pred hh------------c-cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012628 335 RL------------A-RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 401 (459)
Q Consensus 335 ~~------------~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 401 (459)
.. . ...+.+++..++.++...|+.. . .+.+++.+++++++++++.+.|+ ++| +++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~ 320 (393)
T 1vjo_A 251 NWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI--A---QEGLANCWQRHQKNVEYLWERLE-DIG----LSLHV 320 (393)
T ss_dssp CSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--H---HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBSS
T ss_pred ceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHH--H---HccHHHHHHHHHHHHHHHHHHHH-HcC----CcccC
Confidence 00 0 1111256667777766555421 1 22367889999999999999999 776 56666
Q ss_pred CCc---ceeeec----CCCH-HHHHHHHhcccEEEcCCC--------cEEE-c-cCChhhHHHHHHHHHHHHh
Q 012628 402 RQI---GMFSFT----GLNK-AQSDNMTNKWHVYMTKDG--------RISL-A-GLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 402 ~~~---g~f~~~----~l~~-~~~~~ll~~~gI~v~~gg--------Ris~-~-~~~~e~i~~~~~~l~~~~~ 456 (459)
+++ +.++++ +.+. ++.+.|++++||.+.+|. ||++ + ..+++++++++++|+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 321 EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 554 223333 3344 456677665699998762 9994 3 2256679999999998763
No 93
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.97 E-value=1.5e-31 Score=268.60 Aligned_cols=338 Identities=10% Similarity=0.018 Sum_probs=226.0
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
...+||+.|.+..+.++ .+|.+.+++.+.++... ...|.+..+..++|+++++++.+ . .+++|++ |+||
T Consensus 41 ~~~id~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~-~~~~v~~--~~g~ 111 (426)
T 1sff_A 41 REYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG----D-FAKKTLL--VTTG 111 (426)
T ss_dssp CEEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC----S-SCEEEEE--ESSH
T ss_pred CEEEEcccChhhcccCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc----c-cccEEEE--eCch
Confidence 46789988874222244 27889999998885421 12467788999999999999732 1 2578999 9999
Q ss_pred hhHHHHHHHHHHH-hCCCCEEEEcCCCCcchH-HHhhhCCCC-------------eeeeeeec---CCCCCCCHHHHHHH
Q 012628 161 TGSLRLAAALIER-YFPGAKVLISSPTWGNHK-NIFNDARVP-------------WSEYRYYD---PKTVGLDFEGMIAD 222 (459)
Q Consensus 161 t~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~-~~~~~~G~~-------------v~~v~~~~---~~~~~~d~e~l~~~ 222 (459)
+++++++.++... ..+| +|++++|+|..+. ..+...|.+ ++.+|+.. ..++.+|++.++++
T Consensus 112 ~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~ 190 (426)
T 1sff_A 112 SEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI 190 (426)
T ss_dssp HHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHH
Confidence 9999998653323 3465 8999999997654 455555543 66677632 11234789999999
Q ss_pred HHcC--CCCcEEEEe-CCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012628 223 IKAA--PGGSFILLH-GCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (459)
Q Consensus 223 i~~~--~~~~~~ii~-~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (459)
+++. +++++++++ ++++| || .+++++++++|.++|++||+++|+||+|.++++.+. ...+ +..+....
T Consensus 191 l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~~d 262 (426)
T 1sff_A 191 FKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVAPD 262 (426)
T ss_dssp HHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSCCS
T ss_pred HHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCCCC
Confidence 8731 124555554 56788 99 889999999999999999999999999998875431 1111 11111122
Q ss_pred EEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
+.||||.+++ |+|+||+++ +++ +.+.+.......+.+.+.++|.++...|+.. .+ +...+++++
T Consensus 263 i~s~sK~~~~-GlriG~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~------~~--~~~~~~~~~ 326 (426)
T 1sff_A 263 LTTFAKSIAG-GFPLAGVTG---RAE----VMDAVAPGGLGGTYAGNPIACVAALEVLKVF------EQ--ENLLQKAND 326 (426)
T ss_dssp EEEECGGGGT-SSCCEEEEE---EHH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH------HH--TTHHHHHHH
T ss_pred EEEEcccccC-CCceEEEEE---cHH----HHhhhccCCcCcCCCCCHHHHHHHHHHHHHH------Hh--cCHHHHHHH
Confidence 3499999996 999999976 666 3333332222233356777777776554311 00 134456666
Q ss_pred HHHHHHHHHhhccC--CCCCcccccCCcceeeecCCC-------------HHHHHHHHhcccEEEcCCC------cEEEc
Q 012628 379 VRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGLN-------------KAQSDNMTNKWHVYMTKDG------RISLA 437 (459)
Q Consensus 379 ~~~~l~~~L~~~~g--~~~~~~~~~~~~g~f~~~~l~-------------~~~~~~ll~~~gI~v~~gg------Ris~~ 437 (459)
+++++.+.|+ +++ ++. +....+. |+|+|+.+. .++.+.|++ +||.+.||+ ||+++
T Consensus 327 ~~~~l~~~l~-~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~iRi~~~ 402 (426)
T 1sff_A 327 LGQKLKDGLL-AIAEKHPE-IGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPYYNVLRILVP 402 (426)
T ss_dssp HHHHHHHHHH-HHHHTCTT-EEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTTSCEEEECCC
T ss_pred HHHHHHHHHH-HHHHhCCC-eEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCCCCEEEEECC
Confidence 6777777766 542 211 2233445 567776551 234556665 599999874 99876
Q ss_pred -cCChhhHHHHHHHHHHHHhhc
Q 012628 438 -GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 -~~~~e~i~~~~~~l~~~~~~~ 458 (459)
..+++++++++++|+++++++
T Consensus 403 ~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 403 LTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 448999999999999998765
No 94
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=1.9e-30 Score=257.39 Aligned_cols=317 Identities=11% Similarity=-0.020 Sum_probs=218.8
Q ss_pred CCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012628 98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177 (459)
Q Consensus 98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g 177 (459)
+..+.++.+.+++.+.+.. . ..|....+..++|+++++++.. ++++|++ |+||++++.++.+. .+.+|
T Consensus 16 ~~~~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--t~g~t~a~~~~~~~--~~~~g 83 (392)
T 2z9v_A 16 GPVNAYPEVLRGLGRTVLY-D-YDPAFQLLYEKVVDKAQKAMRL------SNKPVIL--HGEPVLGLEAAAAS--LISPD 83 (392)
T ss_dssp SCCCCCHHHHHHTTSCCCC-T-TSHHHHHHHHHHHHHHHHHTTC------SSCCEEE--SSCTHHHHHHHHHH--HCCTT
T ss_pred CCcCCCHHHHHHHhccccc-c-ccHHHHHHHHHHHHHHHHHhCC------CCCEEEE--eCCchHHHHHHHHH--hcCCC
Confidence 3344588999988776643 1 2222345678999999999743 2688999 99999999998443 37799
Q ss_pred CEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012628 178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA 255 (459)
Q Consensus 178 d~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~ 255 (459)
|+|++++|+|+.+ ...++..|++++.+|++ .++.+|++.+++++++. ++++++++++|+||||.+++ +++|.
T Consensus 84 d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~ 157 (392)
T 2z9v_A 84 DVVLNLASGVYGKGFGYWAKRYSPHLLEIEVP--YNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP---IDAIG 157 (392)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC---HHHHH
T ss_pred CEEEEecCCcccHHHHHHHHHcCCceEEeeCC--CCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc---HHHHH
Confidence 9999999999765 34456679999999984 34579999999999642 25678888999999999976 67899
Q ss_pred HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHH-
Q 012628 256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQL- 333 (459)
Q Consensus 256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~- 333 (459)
++|++||+++|+|++|.. +.... + + ...+.++++.|+||. ++++| +||+++ +++.++.+....
T Consensus 158 ~l~~~~~~~li~D~a~~~-g~~~~--~---~----~~~~~d~~~~s~sK~~~~~~g--~G~l~~---~~~~~~~l~~~~~ 222 (392)
T 2z9v_A 158 ALVSAHGAYLIVDAVSSF-GGMKT--H---P----EDCKADIYVTGPNKCLGAPPG--LTMMGV---SERAWAKMKANPL 222 (392)
T ss_dssp HHHHHTTCEEEEECTTTB-TTBSC--C---G----GGGTCSEEEECSSSTTCCCSC--CEEEEE---CHHHHHHHHTCTT
T ss_pred HHHHHcCCeEEEEccccc-CCccc--c---c----ccccceEEEecCcccccCCCc--eeEEEE---CHHHHHHhhhccC
Confidence 999999999999999763 21111 1 1 122356889999995 55566 599976 777444442100
Q ss_pred -------------Hh--hccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012628 334 -------------KR--LARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDW 397 (459)
Q Consensus 334 -------------~~--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 397 (459)
.. .......+++..++.++...++ .+.+. +++++++++++++++.+.|+ ++| +
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~------~~~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~ 291 (392)
T 2z9v_A 223 APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD------LYLNEGPEAVWARHALTAKAMRAGVT-AMG----L 291 (392)
T ss_dssp SCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH------HHHHHCHHHHHHHHHHHHHHHHHHHH-HTT----C
T ss_pred CCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHHHHHH-HcC----C
Confidence 00 0011122344444333333332 11233 67888999999999999999 775 4
Q ss_pred cccc-CC---cceeeec----CCCH-HHHHHHHhcccEEEcCCC--------cEEE-c-cCChhhHHHHHHHHHHHHhhc
Q 012628 398 SFIL-RQ---IGMFSFT----GLNK-AQSDNMTNKWHVYMTKDG--------RISL-A-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 398 ~~~~-~~---~g~f~~~----~l~~-~~~~~ll~~~gI~v~~gg--------Ris~-~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
++.. +. .+.++|+ +.+. ++.++|.+++||.+.+|. ||++ + ..+++++++++++|+++++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 292 SVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp CBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred eeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 5554 31 3444443 2344 456667665699998762 9994 5 458999999999999998764
No 95
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=8e-31 Score=259.78 Aligned_cols=326 Identities=13% Similarity=0.040 Sum_probs=225.2
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---CC---CCCC-CcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NK---EYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~---~Y~~-~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
+++++|..+.+ + +.++.+.+++.+.+.... .. .|.. ..+..++|+++++++.. ++++|++
T Consensus 15 ~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~------~~~~v~~- 81 (390)
T 1elu_A 15 ANKTYFNFGGQ----G--ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNV------DPNTITI- 81 (390)
T ss_dssp TTSEECCTTTC----C--CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTS------CGGGEEE-
T ss_pred CCeEEecCCcc----C--CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCC------CHHHEEE-
Confidence 35788887754 3 237889999888775311 01 3533 36889999999999742 2678999
Q ss_pred ecccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHH----hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012628 156 QGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS 230 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 230 (459)
|+||+++++++ +... +.+||+|++++|+|..+... ++..|++++.+|++.++++.+|++.+++++++ ++
T Consensus 82 -~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~~ 155 (390)
T 1elu_A 82 -TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP---KT 155 (390)
T ss_dssp -ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT---TE
T ss_pred -eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC---Cc
Confidence 99999999998 3333 56999999999999987654 46679999999985335688999999998875 78
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012628 231 FILLHGCAHNPTGIDPTPEQWEKIADVIQ----EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306 (459)
Q Consensus 231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~----~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 306 (459)
+++++++|+||||.+++ +++|.++|+ +||+++|+||+|.... ... . ......++++.|+||.+
T Consensus 156 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~-~~~-----~----~~~~~~d~~~~s~~K~~ 222 (390)
T 1elu_A 156 RLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS-LPL-----D----FSRLEVDYYAFTGHKWF 222 (390)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT-BCC-----C----TTTSCCSEEEEESSSTT
T ss_pred eEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC-cCC-----C----hhhcCCCEEEccccccc
Confidence 88999999999999987 778999999 9999999999986322 111 1 12234578899999933
Q ss_pred ccCCCCcceEEEEeCChhHHHHHHHHHHh------------------hccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012628 307 GLYAERIGAMNVVCSSSDLAARVKSQLKR------------------LARPMYSNPPVHGARIVANVVGNPALFDEWKAE 368 (459)
Q Consensus 307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 368 (459)
. .|.|+||+++ +++..+.+...... ..+....+++..++.++...+.. ... ..+
T Consensus 223 ~-~~~g~G~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---l~~-~~~ 294 (390)
T 1elu_A 223 A-GPAGVGGLYI---HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL---HQR-QGT 294 (390)
T ss_dssp C-CCTTCEEEEE---CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH---HHH-HCC
T ss_pred c-CCCceEEEEE---CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHH---HHH-cCC
Confidence 2 4567999976 66633322210000 00111224454554444333321 000 012
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCCccccc---CCcceeeec---CCCH-HHHHHHHhcccEEEcCCC-----cEE
Q 012628 369 MEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFIL---RQIGMFSFT---GLNK-AQSDNMTNKWHVYMTKDG-----RIS 435 (459)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~---~~~g~f~~~---~l~~-~~~~~ll~~~gI~v~~gg-----Ris 435 (459)
+++++++++++++++.+.|+ ++ | +++.. +.++++.|. +.+. ++.+.|. ++||.+.+|+ ||+
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~iRis 368 (390)
T 1elu_A 295 AEERYQAICQRSEFLWRGLN-QLPH----VHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIADPDCIRAC 368 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HSTT----EEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEETTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCC----cEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecCCCCeEEEe
Confidence 67888999999999999999 76 4 56553 467777662 2344 4456665 5699998863 999
Q ss_pred Ecc-CChhhHHHHHHHHHHH
Q 012628 436 LAG-LSLAKCEYLADAIIDS 454 (459)
Q Consensus 436 ~~~-~~~e~i~~~~~~l~~~ 454 (459)
++. .+++++++++++|+++
T Consensus 369 ~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 369 CHYITDEEEINHLLARLADF 388 (390)
T ss_dssp CCTTCCHHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHHhh
Confidence 853 3899999999998653
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=2.1e-29 Score=250.91 Aligned_cols=329 Identities=15% Similarity=0.051 Sum_probs=225.1
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC-----CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (459)
+.+++..+.+. +.++ +|.+.+++.+.+.. .. ...|+...+..++|+++++++.. +++|++ +
T Consensus 47 ~~i~~~~~~~~---~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~ 113 (401)
T 2bwn_A 47 DITVWCGNDYL---GMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-------EAALVF--S 113 (401)
T ss_dssp EEEECSCSCTT---SGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-------SEEEEE--S
T ss_pred cEEEeeCCCcc---cCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEE--C
Confidence 46777765441 2333 66899999888754 11 12355667899999999999742 567877 7
Q ss_pred ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC-CCcEEEEeC
Q 012628 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG 236 (459)
Q Consensus 158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~ 236 (459)
+|++ ++..+..++..+.+||+|+++.|+|..+...++..|++++.+|.+ |++.+++.++... +++++++++
T Consensus 114 sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~ 185 (401)
T 2bwn_A 114 SAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFE 185 (401)
T ss_dssp CHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEE
T ss_pred CcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEe
Confidence 7666 666653333234699999999999999999999999999999862 7889998887432 367889999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcce
Q 012628 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGA 315 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~ 315 (459)
+|+||||.+++ +++|+++|++||+++|+||+|....++...... . ...+. ...+++++||||.++++| ||
T Consensus 186 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~--~-~~~~~~~~~~i~~~s~sK~~~~~G---G~ 256 (401)
T 2bwn_A 186 SVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGV--A-ERDGLMHRIDIFNGTLAKAYGVFG---GY 256 (401)
T ss_dssp SBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCH--H-HHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred cCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCcee--e-eccCccccCcEEEeechhhccCCC---CE
Confidence 99999999976 788999999999999999998844332111111 1 11111 124788999999999888 99
Q ss_pred EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 012628 316 MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK 395 (459)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 395 (459)
+++ +++..+.+....... .... +.+..++.++...++.. . ...+++.+++++++++++.+.|+ ++|
T Consensus 257 ~~~---~~~~~~~l~~~~~~~-~~~~-~~~~~~~~a~~~al~~~---~--~~~~~~~~~~~~~~~~~l~~~L~-~~g--- 322 (401)
T 2bwn_A 257 IAA---SARMVDAVRSYAPGF-IFST-SLPPAIAAGAQASIAFL---K--TAEGQKLRDAQQMHAKVLKMRLK-ALG--- 322 (401)
T ss_dssp EEE---CHHHHHHHHHHCHHH-HTSB-CCCHHHHHHHHHHHHHH---T--SHHHHHHHHHHHHHHHHHHHHHH-HHT---
T ss_pred Eec---CHHHHHHHHHhCcCc-eecC-CCCHHHHHHHHHHHHHH---H--hcccHHHHHHHHHHHHHHHHHHH-HCC---
Confidence 865 777555543321111 1111 23335555444443211 0 01246778899999999999999 776
Q ss_pred CcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC-------C----cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 396 DWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 396 ~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
+++..+.++ ++|+.+. .++.+.|++++||.+.|+ | ||+++.. +++++++++++|+++++++
T Consensus 323 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 323 -MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp -CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred -CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 566666666 5555442 234567765679998653 2 8998743 8899999999999988764
No 97
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.97 E-value=3.2e-30 Score=254.74 Aligned_cols=321 Identities=12% Similarity=0.044 Sum_probs=220.6
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCC--CC-CCCC----CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012628 93 YRTEELQPYVLDVVKKAENLMLERGE--NK-EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165 (459)
Q Consensus 93 ~~~~~~~~~~~~~v~~a~~~~~~~~~--~~-~Y~~----~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~ 165 (459)
|+|.++..+.++.|.+++.+.+.... .. .|.. ..+..++|+++++++... +++|++ |+||+++++
T Consensus 3 yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~------~~~v~~--~~g~t~a~~ 74 (382)
T 4eb5_A 3 YFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG------GGTVVF--TSGATEANN 74 (382)
T ss_dssp BCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT------TEEEEE--ESSHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--cCchHHHHH
Confidence 44555555568999999999886411 01 1432 246788999999997432 578988 999999999
Q ss_pred HHHHHHHH--hCCCCEEEEcCCCCcchHHHhh---hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 166 LAAALIER--YFPGAKVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 166 l~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~~---~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
++...+.. ..+||+|++++|+|+.+...+. ..|++++.+|++ +++.+|++++++++++ +++++++++|+|
T Consensus 75 ~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~n 149 (382)
T 4eb5_A 75 LAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLRD---DTILVSVQHANN 149 (382)
T ss_dssp HHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBCHHHHHHHCCT---TEEEEECCSBCT
T ss_pred HHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccCHHHHHHHhcC---CCeEEEEeccCC
Confidence 98544421 1689999999999998866654 479999999984 4577999999999875 688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEe
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (459)
|||.+++ +++|.++|++||++ |+|++|. ++... . .+.. .+.++++.|+||.+|++| +||+++
T Consensus 150 ptG~~~~---l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~---~~~~----~~~di~~~s~sK~~g~~g--~G~~~~-- 211 (382)
T 4eb5_A 150 EIGTIQP---VEEISEVLAGKAAL-HIDATAS-VGQIE--V---DVEK----IGADMLTISSNDIYGPKG--VGALWI-- 211 (382)
T ss_dssp TTCBBCC---HHHHHHHHTTSSEE-EEECTTT-BTTBC--C---CHHH----HTCSEEEEETGGGTCCSS--CEEEEE--
T ss_pred CccccCC---HHHHHHHHHHCCCE-EEEcchh-cCCcc--c---Cccc----cCCCEEEeehHHhcCCCc--eEEEEE--
Confidence 9999976 67899999999999 9999976 33211 1 1211 135688999999998777 799865
Q ss_pred CChhHHHHHHHHHHh---hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012628 321 SSSDLAARVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW 397 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 397 (459)
+++. .+...+.. .......+++...+.++...++ .+.+.+++++++++++++++.+.|+ +++ ++
T Consensus 212 -~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~------~~~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~ 278 (382)
T 4eb5_A 212 -RKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE------ITAMEWREEAERLRRLRDRIIDNVL-KIE---ES 278 (382)
T ss_dssp -ETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHT-TST---TE
T ss_pred -cccc--ccCceecCCCccccccCCCccHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHh-hCC---Ce
Confidence 3331 01110000 0011122344444444433332 1133467888999999999999999 762 15
Q ss_pred ccccCC----cceeee--cCCCHH-HHHHHHhcccEEEcCC-------------------------C--cEEEccC-Chh
Q 012628 398 SFILRQ----IGMFSF--TGLNKA-QSDNMTNKWHVYMTKD-------------------------G--RISLAGL-SLA 442 (459)
Q Consensus 398 ~~~~~~----~g~f~~--~~l~~~-~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-~~e 442 (459)
++..+. ++++.+ .+.+.+ +.+.|. ++||.+.+| + ||+++.. +++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~ 357 (382)
T 4eb5_A 279 YLNGHPEKRLPNNVNVRFSYIEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDE 357 (382)
T ss_dssp EECSCSSSBCTTEEEEEETTSCHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHH
T ss_pred EEeCCcccCCCCEEEEEeCCcCHHHHHHHHH-HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHH
Confidence 555543 334322 244544 455555 569999874 3 9998843 899
Q ss_pred hHHHHHHHHHHHHhhc
Q 012628 443 KCEYLADAIIDSYHNV 458 (459)
Q Consensus 443 ~i~~~~~~l~~~~~~~ 458 (459)
++++++++|+++++++
T Consensus 358 ~i~~~~~~l~~~~~~~ 373 (382)
T 4eb5_A 358 DVDRLLEVLPGVIERL 373 (382)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 98
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=2.5e-30 Score=252.56 Aligned_cols=308 Identities=14% Similarity=0.041 Sum_probs=215.9
Q ss_pred cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012628 101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180 (459)
Q Consensus 101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V 180 (459)
++++.+.+++.+.+.. . ..|....+..++|+++++++... ++++++ |+||+++++++.+ ..+.+||+|
T Consensus 11 ~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~g~~------~~~i~~--~~g~t~a~~~~~~--~~~~~gd~v 78 (352)
T 1iug_A 11 RLHPKALEALARPQLH-H-RTEAAREVFLKARGLLREAFRTE------GEVLIL--TGSGTLAMEALVK--NLFAPGERV 78 (352)
T ss_dssp CCCHHHHHHHHSCCCC-T-TSHHHHHHHHHHHHHHHHHHTCS------SEEEEE--ESCHHHHHHHHHH--HHCCTTCEE
T ss_pred CCCHHHHHHhccCCCC-c-cCHHHHHHHHHHHHHHHHHhCCC------CceEEE--cCchHHHHHHHHH--hccCCCCeE
Confidence 3489999999887642 1 22222356789999999997532 578998 9999999999843 346799999
Q ss_pred EEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012628 181 LISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258 (459)
Q Consensus 181 lv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~ 258 (459)
++++|+|+.+. ..++..|++++.+|++ .++.+|++++++ + +++++++++|+||||.+++ +++|.++|
T Consensus 79 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~---~---~~~~v~~~~~~nptG~~~~---l~~i~~l~ 147 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAGLVVERLDYP--YGDTPRPEDVAK---E---GYAGLLLVHSETSTGALAD---LPALARAF 147 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCTTTSCC---S---SCSEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHhc---c---CCcEEEEEEecCCcceecC---HHHHHHHH
Confidence 99999998865 4556789999999984 356789888876 2 5668888999999999966 67899999
Q ss_pred Hhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc-CcccCCCCcceEEEEeCChhHHHH-------
Q 012628 259 QEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMNVVCSSSDLAAR------- 328 (459)
Q Consensus 259 ~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~RiG~~~~v~~~~~~~~~------- 328 (459)
++| |+++|+|++|. ++.... + + ...+.++++.|+|| .++++| +||+++ +++..+.
T Consensus 148 ~~~~~~~~li~D~a~~-~~~~~~--~---~----~~~~~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~~~~~~~~ 212 (352)
T 1iug_A 148 KEKNPEGLVGADMVTS-LLVGEV--A---L----EAMGVDAAASGSQKGLMCPPG--LGFVAL---SPRALERLKPRGYY 212 (352)
T ss_dssp HHHCTTCEEEEECTTT-BTTBCC--C---S----GGGTCSEEEEESSSTTCCCSC--EEEEEE---CHHHHHTCCCCSST
T ss_pred HhhCCCCEEEEECCcc-ccCcce--e---c----cccCeeEEEecCcccccCCCc--eeEEEE---CHHHHHHhhCCCce
Confidence 999 99999999975 322111 1 1 11235678999999 556555 799866 6664433
Q ss_pred --HHHHHHhh-ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC-c
Q 012628 329 --VKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-I 404 (459)
Q Consensus 329 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-~ 404 (459)
+....... ......+++..++.++...++.. .+++++.+++++++++++.+.|+ ++| +++..+. .
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~ 281 (352)
T 1iug_A 213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEV------LPRLEEHLALKAWQNALLYGVGE-EGG----LRPVPKRFS 281 (352)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSBC
T ss_pred eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HCC----CcccccccC
Confidence 22111111 11222345555555544444211 12257888999999999999999 776 5666553 4
Q ss_pred ceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 405 GMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 405 g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
+.++|+. .+. ++.++|.+ +||.+.+| + ||+++.. +++++++++++|+++++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 282 PAVAAFYLPEGVPYARVKEAFAQ-RGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp TTCEEEECCTTCCHHHHHHHHHT-TTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH-CCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 5555543 344 44556665 59999876 2 9998864 6899999999999998764
No 99
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.97 E-value=3.1e-30 Score=251.74 Aligned_cols=324 Identities=14% Similarity=0.041 Sum_probs=215.3
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
.++|+|+.+.+ .. .++.+.+++.+.... ...|.+..+..+||+++++++.. +++++ ++||++
T Consensus 3 ~~~i~~~~~~~----~~--p~~~~~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~ 64 (347)
T 1jg8_A 3 HMMIDLRSDTV----TK--PTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGTM 64 (347)
T ss_dssp --CEECSCGGG----CC--CCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHH
T ss_pred ceEEEeccccC----CC--CCHHHHHHHhcCCCC--CcccCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcHH
Confidence 36789998876 33 368888888765422 24688888999999999999743 34666 788899
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcc-hH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGN-HK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHG 236 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~ 236 (459)
++.++ +...+.+||+|++++|+|.. |. ..++..|++++.+ .. +++.+|++.+++++++. .+++++++++
T Consensus 65 a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 65 GNQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp HHHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred HHHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEe
Confidence 98877 44446799999999999865 32 2567789998888 42 34568999999998741 1268889999
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC--CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012628 237 CAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (459)
Q Consensus 237 ~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (459)
+||||| |.+++.+++++|+++|++||+++|+|++|... .+.+. + ...+....+ .++.|+||.++++ +
T Consensus 140 ~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~---~~~~~~~~d--~~~~s~sK~l~~~---~ 209 (347)
T 1jg8_A 140 NTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV--P---VKEYAGYAD--SVMFCLSKGLCAP---V 209 (347)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--C---HHHHHHTCS--EEEEESSSTTCCS---S
T ss_pred ccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--C---hHHhccccc--EEEEecccccCCC---c
Confidence 999999 99999999999999999999999999986421 11111 1 112222223 3345899999853 7
Q ss_pred ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012628 314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 393 (459)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 393 (459)
||+ ++.+++.++++....... ......+.+.+.++...|+.. .+.+.+ ..++++.+.+.|+ ++|
T Consensus 210 G~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---------~~~~~~-~~~~~~~l~~~L~-~~~- 273 (347)
T 1jg8_A 210 GSV--VVGDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKM---------VDRLKE-DHENARFLALKLK-EIG- 273 (347)
T ss_dssp CEE--EEECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHS---------STTHHH-HHHHHHHHHHHHH-HHT-
T ss_pred eEE--EEcCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHH-hcC-
Confidence 864 233777555543322211 111122334444433333210 112222 2346688888888 765
Q ss_pred CCCccc-ccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHHhhcC
Q 012628 394 GKDWSF-ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHNVS 459 (459)
Q Consensus 394 ~~~~~~-~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~~~~~ 459 (459)
+++ ..+..+.|+|+.+ +. ++.++|.+ +||.+.++| ||++. ..+++++++++++|++++++++
T Consensus 274 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~~ 347 (347)
T 1jg8_A 274 ---YSVNPEDVKTNMVILRTDNLKVNAHGFIEALRN-SGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS 347 (347)
T ss_dssp ---CBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHH-HTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred ---ceeccCCCcceEEEEEcccccCCHHHHHHHHHH-CCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 343 2233445666533 33 45666665 699998864 99884 4489999999999999988764
No 100
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.97 E-value=8.6e-30 Score=252.80 Aligned_cols=325 Identities=11% Similarity=0.091 Sum_probs=224.6
Q ss_pred CCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccC-ceEEeec
Q 012628 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQG 157 (459)
Q Consensus 81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t 157 (459)
..+..++++.|.. ++++.+.+++.+.+.. .|. +..+..++|+++++++... ++ +|++ |
T Consensus 16 ~~~~~~~~~~g~~-------~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~------~~~~i~~--~ 76 (393)
T 2huf_A 16 VTPNKLLMGPGPS-------NAPQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLFQTN------NIATFCL--S 76 (393)
T ss_dssp CCCCCEECSSSCC-------CCCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--S
T ss_pred CCCCeEEecCCCC-------CCCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--c
Confidence 3456677766632 2378898888776532 232 3457889999999997532 44 7888 9
Q ss_pred ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
+||+++++++... .+.+||+|++++|+|..+ ...++..|++++.+|++ .++.+|++.+++++++. +++++++
T Consensus 77 ~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~v~~ 150 (393)
T 2huf_A 77 ASGHGGMEATLCN--LLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSK--VGQSLSLDEIRDALLIH--KPSVLFL 150 (393)
T ss_dssp SCHHHHHHHHHHH--HCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSEEEE
T ss_pred CcHHHHHHHHHHH--HhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCC--CCCCCCHHHHHHHHhcc--CCcEEEE
Confidence 9999999998433 367999999999999874 33456789999999984 35679999999999751 4567778
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcc
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIG 314 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG 314 (459)
++|+||||.+++ +++|.++|++||+++|+|+++. ++.... . +...+.++++.|+||. +|++|+ |
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~-~~~~~~-----~----~~~~~~d~~~~s~sK~l~g~~G~--G 215 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS-LGGAPM-----F----MDRWEIDAMYTGSQKVLGAPPGI--T 215 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC-----C----TTTTTCSEEECCSSSTTCCCSSC--E
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc-cCCCCc-----c----hhhcCccEEEECCCcccccCCCe--E
Confidence 999999999977 7789999999999999999954 332111 1 1122467889999996 567886 9
Q ss_pred eEEEEeCChhHHHHHHHH---HHhh----------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 315 AMNVVCSSSDLAARVKSQ---LKRL----------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
|+++ +++.++.+... .... .+....+++..++.++...++. .. ...+++.+++
T Consensus 216 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~--~~~~~~~~~~ 287 (393)
T 2huf_A 216 PVSF---SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM---AC--EEGLPALIAR 287 (393)
T ss_dssp EEEE---CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH---HH--HHCHHHHHHH
T ss_pred EEEE---CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH---HH--HhCHHHHHHH
Confidence 9876 77744443321 0000 0111123445444444434321 10 1136778899
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCC---cceeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEE-cc
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISL-AG 438 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~---~g~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~~ 438 (459)
++++++++.+.|+ ++| +++..+. .++++++ +.+. ++.++|++++||.+.+| + ||++ +.
T Consensus 288 ~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~ 362 (393)
T 2huf_A 288 HEDCAKRLYRGLQ-DAG----FELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQ 362 (393)
T ss_dssp HHHHHHHHHHHHH-HTT----CCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGG
T ss_pred HHHHHHHHHHHHH-HcC----CeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccC
Confidence 9999999999999 776 4555543 3434443 3344 45667777679999886 2 9999 42
Q ss_pred -CChhhHHHHHHHHHHHHhhc
Q 012628 439 -LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 439 -~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+++++++++++|+++++++
T Consensus 363 ~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 363 NATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp GCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHc
Confidence 26788999999999998764
No 101
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.97 E-value=7.3e-30 Score=251.76 Aligned_cols=325 Identities=12% Similarity=0.052 Sum_probs=224.0
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+...+||+.|.|-...++ .++.+.+++.+.+... ....| +..+..++++++++++ |. ++++++ |+|
T Consensus 27 g~~~ld~~~~~~~~~~g~--~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~--~~g 94 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGH--AYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFF--ANS 94 (375)
T ss_dssp CCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEE--ESS
T ss_pred CCEEEEcCCcccccccCC--CCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEE--eCc
Confidence 356889999987222222 3788999998887532 12356 5678899999999985 22 478999 999
Q ss_pred chhHHHHHHHHHH-Hh---CCC-CEEEEcCCCCcchHHHhhhCCCCee----eeeeecCCCC----CCCHHHHHHHHHcC
Q 012628 160 GTGSLRLAAALIE-RY---FPG-AKVLISSPTWGNHKNIFNDARVPWS----EYRYYDPKTV----GLDFEGMIADIKAA 226 (459)
Q Consensus 160 gt~a~~l~~~~~~-~~---~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~----~v~~~~~~~~----~~d~e~l~~~i~~~ 226 (459)
|+++++++.+.+. .. .+| |+|++++|+|..+...+...+...+ ..|+. .+. ..|++++++++++
T Consensus 95 ~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~- 171 (375)
T 2eh6_A 95 GTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV--PGFSYAKLNDIDSVYKLLDE- 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC--SSEEEECTTCHHHHHTTCCT-
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC--CCceeCCCchHHHHHHHhcC-
Confidence 9999999865432 23 678 9999999999887665544332211 01111 011 1589999988874
Q ss_pred CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012628 227 PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (459)
Q Consensus 227 ~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (459)
++++++++++|||||.+ .+.+++++|.++|++||+++|+||+|.+++..+ ....+.. .....+++ ||||.
T Consensus 172 --~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~-~~~~~d~~---s~SK~ 242 (375)
T 2eh6_A 172 --ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG---EFYAYQH-FNLKPDVI---ALAKG 242 (375)
T ss_dssp --TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGG-GTCCCSEE---EECGG
T ss_pred --CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---cchhhhh-cCCCCCEE---EEccc
Confidence 77888889999999999 578889999999999999999999999876432 1111111 12123433 88899
Q ss_pred cccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 385 (459)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (459)
++ +|+|+||+++ +++ +.+.+.........+.+.+++.++...|+. +++..++++++++++.+
T Consensus 243 ~~-~g~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~ 304 (375)
T 2eh6_A 243 LG-GGVPIGAILA---REE----VAQSFTPGSHGSTFGGNPLACRAGTVVVDE----------VEKLLPHVREVGNYFKE 304 (375)
T ss_dssp GG-TTSCCEEEEE---EHH----HHTTCCTTSCCCSSTTCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred cc-CCCCeEEEEE---cHH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 99 7999999976 666 333333211122225566676666554432 22667888889999999
Q ss_pred HHhhccCCCCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHHHHHHHHH
Q 012628 386 SLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSY 455 (459)
Q Consensus 386 ~L~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~~~l~~~~ 455 (459)
.|+ +++. ....+ .|+|+|+.+ ..++.+.|.+ +||.+.+++ ||+++ ..+++++++++++|++++
T Consensus 305 ~L~-~~~~----~~~~~-~g~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 305 KLK-ELGK----GKVKG-RGLMLGLELERECKDYVLKALE-KGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp HHH-HTTS----SEEEE-ETTEEEEECSSCCHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred HHH-HHhc----CCceE-EEEEEEEEEcCcHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 999 7752 23333 456777655 3466777776 699998764 88876 348999999999998763
No 102
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.97 E-value=5.3e-30 Score=254.57 Aligned_cols=312 Identities=10% Similarity=0.081 Sum_probs=219.7
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccC-ceEEeecccchhHHHHHHHHHHHhCCCC
Q 012628 102 VLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGA 178 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~a~~l~~~~~~~~~~gd 178 (459)
+++.+.+++.+.+. ..|.+. ....++|+++++++... ++ +|++ |+||+++++++. ...+.+||
T Consensus 29 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~------~~~~v~~--~~g~t~al~~~~--~~~~~~gd 94 (396)
T 2ch1_A 29 CSKRVLTAMTNTVL----SNFHAELFRTMDEVKDGLRYIFQTE------NRATMCV--SGSAHAGMEAML--SNLLEEGD 94 (396)
T ss_dssp CCHHHHHHTTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSCEEEE--SSCHHHHHHHHH--HHHCCTTC
T ss_pred CCHHHHHHhccccc----cCCChhHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCcHHHHHHHHH--HHhcCCCC
Confidence 47888887766442 235432 34789999999997543 45 7988 999999999984 33467999
Q ss_pred EEEEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012628 179 KVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 179 ~Vlv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~ 256 (459)
+|++++|+|..|. ..++..|++++.+|.+ .++.+|++++++++++. +++++++++||||||.+++ +++|.+
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~ 167 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADVRTIEGP--PDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP---LEGVGQ 167 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHH
T ss_pred eEEEEcCCcccHHHHHHHHHcCCceEEecCC--CCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC---HHHHHH
Confidence 9999999999885 4778899999999984 46789999999999752 4567778999999999987 778999
Q ss_pred HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH----
Q 012628 257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ---- 332 (459)
Q Consensus 257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~---- 332 (459)
+|++||+++|+||+|. ++.... . +...+..+++.|++|.++ .+.++|++++ +++.++.+...
T Consensus 168 l~~~~~~~li~Dea~~-~g~~~~-----~----~~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~~~~~~~~~~~~~ 233 (396)
T 2ch1_A 168 ICHQHDCLLIVDAVAS-LCGVPF-----Y----MDKWEIDAVYTGAQKVLG-APPGITPISI---SPKALDVIRNRRTKS 233 (396)
T ss_dssp HHHHTTCEEEEECTTT-BTTBCC-----C----TTTTTCCEEECCCC-CCC-CCSSCEEEEE---CHHHHHHHHTCSSCC
T ss_pred HHHHcCCEEEEEcccc-ccCCcc-----c----hhhcCcCEEEEcCCcccc-CCCCeEEEEE---CHHHHHhhhhccCcc
Confidence 9999999999999977 332111 1 112223566789999765 3344799866 66644443210
Q ss_pred ---------HHh-h-----ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012628 333 ---------LKR-L-----ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW 397 (459)
Q Consensus 333 ---------~~~-~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 397 (459)
... . .+....+++..++.++...|+.. ..+.+++++++++++++++.+.|+ ++| +
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~ 303 (396)
T 2ch1_A 234 KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI-----AEEGLENQIKRRIECAQILYEGLG-KMG----L 303 (396)
T ss_dssp SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHH-HHT----C
T ss_pred cceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHH-HCC----C
Confidence 000 0 01122345666666665555321 123467889999999999999999 876 5
Q ss_pred ccccCCcc----eeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEE-c-cCChhhHHHHHHHHHHHHhhc
Q 012628 398 SFILRQIG----MFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISL-A-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 398 ~~~~~~~g----~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
++..+.++ .++++ +.+. ++.++|++++||.+.+| + ||++ + ..+++++++++++|+++++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 304 DIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp CBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 66666543 24443 3344 45667777679999885 2 9998 3 237889999999999998764
No 103
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=7e-30 Score=253.22 Aligned_cols=320 Identities=12% Similarity=0.057 Sum_probs=215.0
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh-------
Q 012628 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------- 174 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~------- 174 (459)
++|.+.+++.+.+.... ..|....+..++++.+.+++....+. ++++|++ |+||++++.++.+.+..-
T Consensus 42 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~--~~ggt~a~~~~~~~~~~~~~~~~~~ 116 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNL-GDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHI--VSGGTEANLMALRCIKNIWREKRRK 116 (397)
T ss_dssp CCTHHHHHHHHHTTCCT-TSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEE--ESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEE--ecCcHHHHHHHHHHHHHHHHhhhhh
Confidence 37889999998876432 22222224444444444444333332 3678888 999999999985544222
Q ss_pred ----CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH
Q 012628 175 ----FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ 250 (459)
Q Consensus 175 ----~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~ 250 (459)
.+||+|+++.|+|..+...++..|++++.+|++ +++.+|++.+++++++. +++++++++|+||||.+. +
T Consensus 117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~---~ 189 (397)
T 3f9t_A 117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK--EDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTID---N 189 (397)
T ss_dssp TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC--TTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBC---C
T ss_pred cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC--CCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCC---C
Confidence 149999999999999999999999999999984 46789999999999862 566777889999999994 5
Q ss_pred HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH-----HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhH
Q 012628 251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV-----RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL 325 (459)
Q Consensus 251 l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~ 325 (459)
+++|.++|++||+++|+||+|..+..+... ..... ...... +.++++.|++|.++ +|.|+||++ ++++..
T Consensus 190 l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~--~~~~~~ 264 (397)
T 3f9t_A 190 IEELSKIAKENNIYIHVDAAFGGLVIPFLD-DKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGIL--FKDIGY 264 (397)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGTGGGCC-GGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEE--ESSGGG
T ss_pred HHHHHHHHHHhCCeEEEEccccchhhhhcc-cccccccccccccccc-cCCeEEEccccccC-CCCCceEEE--EeCHHH
Confidence 888999999999999999999865432100 00000 000122 45688899999876 678999984 455552
Q ss_pred HHHHHHHHHhhccccc-----------cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012628 326 AARVKSQLKRLARPMY-----------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 394 (459)
Q Consensus 326 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 394 (459)
.+.+........ ...+..++.++...+. ...+++..++++++++++.+.|+ ++|
T Consensus 265 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~~~L~-~~g-- 329 (397)
T 3f9t_A 265 ----KRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG--------REGQRKIVNECMENTLYLYKKLK-ENN-- 329 (397)
T ss_dssp ----GGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-HTT--
T ss_pred ----HHhhccCCccccCCCccccccccccchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHH-HCC--
Confidence 222211111100 1123344444444332 23356778888899999999999 876
Q ss_pred CCcccccCCcceeeecCC-CH-HHHHHHHhcccEEEcCCC-----cEEEcc-CChhhHHHHHHHHHHHHh
Q 012628 395 KDWSFILRQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG-----RISLAG-LSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 395 ~~~~~~~~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg-----Ris~~~-~~~e~i~~~~~~l~~~~~ 456 (459)
+.++.+..+.++|+.+ +. ++.+.|.+ +||.+.+++ ||+++. .+++++++++++|+++++
T Consensus 330 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 330 --FKPVIEPILNIVAIEDEDYKEVCKKLRD-RGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp --CCBSSCCSSSEEEEECTTHHHHHHHHHH-TTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred --CEEEcCCCccEEEEEeCCHHHHHHHHHh-CCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 4544333344444433 33 44566666 599998875 999884 388999999999998875
No 104
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=1.1e-29 Score=250.97 Aligned_cols=315 Identities=15% Similarity=0.060 Sum_probs=220.8
Q ss_pred cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012628 101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180 (459)
Q Consensus 101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V 180 (459)
++++.+.+++.+.+... ..+.......++++.+++++... .++++|++ |+||+++++ + +...+.+||+|
T Consensus 12 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~----~~~~~v~~--~~g~t~al~-~--~~~~~~~gd~v 80 (384)
T 3zrp_A 12 TIKEDVLVAGLENNVGF--TSKEFVEALAYSLKGLRYVMGAS----KNYQPLII--PGGGTSAME-S--VTSLLKPNDKI 80 (384)
T ss_dssp CCCHHHHHHTTCCSCCT--TSHHHHHHHHHHHHHHHHHHTCC----TTSEEEEE--ESCHHHHHH-H--GGGGCCTTCEE
T ss_pred CCCHHHHHHhhcccccc--ccHHHHHHHHHHHHHHHHHhCCC----CCCcEEEE--cCCcHHHHH-H--HHhhcCCCCEE
Confidence 35888988887654321 12222456788899999987543 11278999 999999999 7 44457799999
Q ss_pred EEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012628 181 LISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258 (459)
Q Consensus 181 lv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~ 258 (459)
++++|+|.. +...++..|++++.+|++ .++.+|++++++++++ .+++++++++|+||||.+++ +++|.++|
T Consensus 81 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~ 153 (384)
T 3zrp_A 81 LVVSNGVFGDRWEQIFKRYPVNVKVLRPS--PGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVINKI 153 (384)
T ss_dssp EEECSSHHHHHHHHHHTTSSCEEEEECCS--TTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EEecCCcchHHHHHHHHHcCCcEEEecCC--CCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHHHH
Confidence 999999965 666778899999999984 3567999999999986 25788999999999999976 77899999
Q ss_pred HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHH---------
Q 012628 259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV--------- 329 (459)
Q Consensus 259 ~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~--------- 329 (459)
++||+++|+|++|...... .+ ....+.++++.|+||.++ .+.++||+++ +++.++.+
T Consensus 154 ~~~~~~li~D~a~~~~~~~-~~---------~~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~~~~~~~~~~~~~~~ 219 (384)
T 3zrp_A 154 RKYVELIVVDGVSSVGAEE-VK---------AEEWNVDVYLTASQKALG-SAAGLGLLLL---SPKALSILDSQNSIAGY 219 (384)
T ss_dssp GGGEEEEEEECTTTTTTSC-CC---------TTTTTCSEEEEETTSTTC-CCSSEEEEEE---CHHHHHHHHHCCCSCCS
T ss_pred HhcCCEEEEECcccccCcc-cc---------ccccCCCEEEecCccccc-CCCceEEEEE---CHHHHHHhcCCCCCCcc
Confidence 9999999999996643321 11 112245789999999885 2344899977 77766555
Q ss_pred ---HHHHHh-h------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012628 330 ---KSQLKR-L------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF 399 (459)
Q Consensus 330 ---~~~~~~-~------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 399 (459)
...+.. . ....+.+++...+.++...+. +.. ...+++++++++++++++.+.|+ ++| +++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~---~~~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~ 289 (384)
T 3zrp_A 220 YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFR---LIE--KEGIENRIKRHTMVASAIRAGLE-ALG----LEI 289 (384)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHH--HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCB
T ss_pred cccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHH---HHH--hcCHHHHHHHHHHHHHHHHHHHH-HCC----CeE
Confidence 111111 0 111112444444443333332 111 12367889999999999999999 876 466
Q ss_pred ccCC----cceeeecC---CCH-HHHHHHHhcccEEEcCCC-------cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 400 ILRQ----IGMFSFTG---LNK-AQSDNMTNKWHVYMTKDG-------RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 400 ~~~~----~g~f~~~~---l~~-~~~~~ll~~~gI~v~~gg-------Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
..+. ++.++|+. .+. ++.+.|.+ +||.+.+|. ||++... +++++++++++|+++++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 290 VARRPESYSNTVTGVILKVADPQKVLAGTVN-EGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp SCSSGGGBCSSEEEEECSSSCHHHHHHHHHT-TTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccCccEEEEECCCCCHHHHHHHHHH-CCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 6555 34554443 344 44556665 599998875 9997643 8899999999999998764
No 105
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=2.1e-29 Score=250.82 Aligned_cols=324 Identities=10% Similarity=0.077 Sum_probs=228.5
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CCC---CCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GEN---KEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~---~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
+...|||+.|.|+ +.. .++.+.+++.+.+.. ... ..|. ...+..++|+++++++.. ++.|++
T Consensus 44 g~~~id~~~~~~~---g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~- 111 (401)
T 1fc4_A 44 GSHVINFCANNYL---GLA-NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM-------EDAILY- 111 (401)
T ss_dssp SCEEEECCCSCTT---SCT-TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CccEEEeeccCcc---ccc-CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence 4578999999652 221 278899998887753 211 1232 256789999999999732 244544
Q ss_pred ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC---CcEE
Q 012628 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI 232 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~ 232 (459)
.+|++++..+. ...+.+||.|+++.|+|..+...++..|++++.+|. .|++++++.+++..+ ++++
T Consensus 112 --~sGs~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 112 --SSCFDANGGLF--ETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp --SCHHHHHHTTH--HHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEE
T ss_pred --CChHHHHHHHH--HHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceE
Confidence 55577888873 334679999999999998888888999999888863 478999988875211 5778
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCC-CCCCCChhHHHHHHh-cCCeEEEEEcCCcCc-cc
Q 012628 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFAS-GSLDNDASSVRLFAT-RGMELLVAQSYSKNL-GL 308 (459)
Q Consensus 233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~-~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~-~~ 308 (459)
+++++||||||.+++ +++|.++|++||+++|+||+|. ++.+ .+ .. .....+ ..+.+++++||||.+ ++
T Consensus 181 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g--~~---~~~~~~~~~~~di~~~s~sK~~~~~ 252 (401)
T 1fc4_A 181 IATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG--RG---SHEYCDVMGRVDIITGTLGKALGGA 252 (401)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS--CC---HHHHTTCTTCCSEEEEESSSTTCSS
T ss_pred EEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC--Cc---cHHHcCCCcCCcEEEecchhhccCC
Confidence 888999999999987 7889999999999999999995 7753 21 11 112222 124579999999999 65
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 388 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 388 (459)
+| ||+++ +++.++.+....... ....+++.+++.++...|+.. +..++.+++++++++++.+.|+
T Consensus 253 ~g---G~~~~---~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~ 317 (401)
T 1fc4_A 253 SG---GYTAA---RKEVVEWLRQRSRPY--LFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQMS 317 (401)
T ss_dssp SC---EEEEE---CHHHHHHHHHHCHHH--HHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHH
T ss_pred CC---EEEEc---CHHHHHHHHHhCcCc--eeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHH
Confidence 54 99866 788555554322111 112356667777665554321 1135778889999999999999
Q ss_pred hccCCCCCcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCC-------C----cEEEcc-CChhhHHHHHHHH
Q 012628 389 AKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLADAI 451 (459)
Q Consensus 389 ~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~e~i~~~~~~l 451 (459)
++| +++.+ ..+.|+|+.+. .++.+.|.+ +||.+.++ + ||+++. .+++++++++++|
T Consensus 318 -~~g----~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 390 (401)
T 1fc4_A 318 -AAG----FTLAG-ADHAIIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAF 390 (401)
T ss_dssp -HTT----CCBCC-SSSSEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred -HcC----CcccC-CCCCEEEEEcCChHHHHHHHHHHHH-CCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 876 45554 45667676542 234556666 59998865 1 899873 3899999999999
Q ss_pred HHHHhhc
Q 012628 452 IDSYHNV 458 (459)
Q Consensus 452 ~~~~~~~ 458 (459)
+++++++
T Consensus 391 ~~~~~~~ 397 (401)
T 1fc4_A 391 TRIGKQL 397 (401)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998875
No 106
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=7.9e-30 Score=255.67 Aligned_cols=324 Identities=14% Similarity=0.096 Sum_probs=224.6
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhh--cCCCC----C----CCCCcccHHHHHHHHHHHhcCCCCccccCc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--RGENK----E----YLPIEGLAAFNKVTAELLFGADNSVLKEQR 151 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~--~~~~~----~----Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~ 151 (459)
+++.|.|..+.+ + ++++.+.+++.+.+. ..... . |.......++++.+++++... +++
T Consensus 20 ~~~~iyld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~------~~~ 87 (423)
T 3lvm_A 20 MKLPIYLDYSAT----T--PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD------PRE 87 (423)
T ss_dssp CCSSEECBTTTC----C--CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC------GGG
T ss_pred cCCCEeecCCCc----C--CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC------CCe
Confidence 356777776554 3 348999999988775 21100 0 111235578999999987542 678
Q ss_pred eEEeecccchhHHHHHHHHHHH-h-CCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012628 152 VATVQGLSGTGSLRLAAALIER-Y-FPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226 (459)
Q Consensus 152 i~~~~t~ggt~a~~l~~~~~~~-~-~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~ 226 (459)
|++ |+||+++++++.+.+.. + .+||+|+++.|+|+.+...+ +..|++++.+|++ .++.+|++++++++++
T Consensus 88 v~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~- 162 (423)
T 3lvm_A 88 IVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMRD- 162 (423)
T ss_dssp EEE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCCT-
T ss_pred EEE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccC--CCCccCHHHHHHhcCC-
Confidence 999 99999999998554321 1 27999999999999887776 4559999999984 4678999999999976
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012628 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306 (459)
Q Consensus 227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 306 (459)
+++++++++|+||||.+++ +++|.++|++||+++|+||+|...... . . ....+.++++.|+||.+
T Consensus 163 --~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~-----~----~~~~~~di~~~s~sK~~ 227 (423)
T 3lvm_A 163 --DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-I-----D----LSQLKVDLMSFSGHKIY 227 (423)
T ss_dssp --TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C-----C----TTTSCCSEEEEESTTTT
T ss_pred --CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-c-----C----hhhcCCCEEEechHHhc
Confidence 7889999999999999977 777999999999999999997643211 1 0 11224568899999999
Q ss_pred ccCCCCcceEEEEeCChhHHHHHHHHHHhhcc-------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012628 307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLAR-------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 379 (459)
Q Consensus 307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 379 (459)
|++| +||+++ +++..+. +..... ....+++..++.++...+. + +.+.+++.+++++++
T Consensus 228 g~~g--~G~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~---~~~~~~~~~~~~~~~ 292 (423)
T 3lvm_A 228 GPKG--IGALYV---RRKPRVR----IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR---I---AKEEMATEMERLRGL 292 (423)
T ss_dssp SCSS--CEEEEE---CBTTBCC----CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHH
T ss_pred CCCC--eEEEEE---eccccCC----CCccccCCcccccccCCCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHH
Confidence 8777 899866 5442221 222111 1122344444444433332 1 123368889999999
Q ss_pred HHHHHHHHhhccCCCCCcccccCCc----cee-ee-cCCCHHHHHHHHhcccEEEcCC----------------------
Q 012628 380 RQKLFDSLSAKDKSGKDWSFILRQI----GMF-SF-TGLNKAQSDNMTNKWHVYMTKD---------------------- 431 (459)
Q Consensus 380 ~~~l~~~L~~~~g~~~~~~~~~~~~----g~f-~~-~~l~~~~~~~ll~~~gI~v~~g---------------------- 431 (459)
++++.+.|+ +++ ++.+..+.+ +++ ++ .+.+.+.+...+.+ |.+.+|
T Consensus 293 ~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 293 RNRLWNGIK-DIE---EVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp HHHHHHHHT-TST---TEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred HHHHHHHHh-cCC---CEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence 999999998 872 155555443 222 22 34566555555554 777765
Q ss_pred ---C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 432 ---G--RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 ---g--Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
+ ||+++.. +++++++++++|+++++++
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3 9998744 7899999999999998764
No 107
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.97 E-value=1.1e-29 Score=253.21 Aligned_cols=328 Identities=13% Similarity=0.069 Sum_probs=221.9
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+...+|++.|.+.+..+. .+|.+.+++.+.+.... ...+.+.....++++.+++++. .+++++ |+||
T Consensus 38 g~~~lD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~v~~--~~gg 105 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGH--AHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--------ADRVFF--CNSG 105 (406)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--------CSEEEE--ESSH
T ss_pred CCEEEECCCchhhcccCC--CCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--------CCeEEE--eCcH
Confidence 356899999965344444 27899999998886521 1122244556778888888742 358988 9999
Q ss_pred hhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHhhhCCC-------------CeeeeeeecCCCCCCCHHHHHH
Q 012628 161 TGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 161 t~a~~l~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
+++++++.+++... .+| |+|++++|+|..+.......+. ++..+|. .|++++++
T Consensus 106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 178 (406)
T 4adb_A 106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASA 178 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHH
Confidence 99999985544221 055 9999999999988554444333 2223322 37999998
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012628 222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~p~NPTG~~~--s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (459)
++++ ++++++++ |+||||.++ +.+++++|+++|++||+++|+||+|.++++.+ ....... .+...+++
T Consensus 179 ~l~~---~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~-~~~~~d~~-- 248 (406)
T 4adb_A 179 LIDD---STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG---ELYAYMH-YGVTPDLL-- 248 (406)
T ss_dssp TCST---TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHHHH-HTCCCSEE--
T ss_pred HhcC---CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhHHHHh-cCCCCCEE--
Confidence 8874 78888877 999999998 99999999999999999999999999887543 1222222 23334544
Q ss_pred EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 379 (459)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 379 (459)
||||.++ +|+|+||+++ +++ +.+.+.........+.+.+++.++...|+... .++..++++++
T Consensus 249 -t~sK~~~-~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~ 311 (406)
T 4adb_A 249 -TTAKALG-GGFPVGALLA---TEE----CARVMTVGTHGTTYGGNPLASAVAGKVLELIN--------TPEMLNGVKQR 311 (406)
T ss_dssp -EECGGGG-TTSCCEEEEE---CHH----HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS--------SHHHHHHHHHH
T ss_pred -Eechhhc-CCCCeEEEEE---cHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH--------hcCHHHHHHHH
Confidence 6799999 9999999876 777 44444443333344677777777765553211 04566777778
Q ss_pred HHHHHHHHhhccCCC-CCcccccCCcceeeecCC------C-HHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHH
Q 012628 380 RQKLFDSLSAKDKSG-KDWSFILRQIGMFSFTGL------N-KAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEY 446 (459)
Q Consensus 380 ~~~l~~~L~~~~g~~-~~~~~~~~~~g~f~~~~l------~-~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~ 446 (459)
++++.+.|+ +++.. ..+.... ..|.++|+.+ + .++.+.|++ +||.+.++| ||+++. .+++++++
T Consensus 312 ~~~l~~~l~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~iRi~~~~~~~~e~i~~ 388 (406)
T 4adb_A 312 HDWFVERLN-TINHRYGLFSEVR-GLGLLIGCVLNADYAGQAKQISQEAAK-AGVMVLIAGGNVVRFAPALNVSEEEVTT 388 (406)
T ss_dssp HHHHHHHHH-HHHHHHCCEEEEE-EETTEEEEEECTTTTTCHHHHHHHHHH-TTEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCceEEE-EEEEEEEEEEeCCcHHHHHHHHHHHHH-CCcEEeecCCCeEEEECCCCCCHHHHHH
Confidence 888888877 54210 0011111 2244555422 2 345666666 499999876 885433 28999999
Q ss_pred HHHHHHHHHhhc
Q 012628 447 LADAIIDSYHNV 458 (459)
Q Consensus 447 ~~~~l~~~~~~~ 458 (459)
++++|+++++++
T Consensus 389 ~~~~l~~~l~~~ 400 (406)
T 4adb_A 389 GLDRFAAACEHF 400 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 108
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=5.2e-29 Score=250.27 Aligned_cols=327 Identities=11% Similarity=0.021 Sum_probs=227.5
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhc-CC-CCCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
+.+.|||+.|.|+ +.. .++.+.+++.+.+.. +. ...|. +.....++++.+++++.. + +.++
T Consensus 63 g~~~id~~~~~~l---g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~-------~-~~i~- 129 (427)
T 2w8t_A 63 GKDTILLGTYNYM---GMT-FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGT-------T-GAIV- 129 (427)
T ss_dssp TEEEEECSCCCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTC-------S-EEEE-
T ss_pred CceEEEEECcccc---cCC-CCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCC-------C-ceEE-
Confidence 4578999999752 322 278899998887754 21 12222 234458999999999732 3 3444
Q ss_pred ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC-CcEEEE
Q 012628 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILL 234 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~ii 234 (459)
+.+|++++..+. ...+.+||.|+++.|+|..+...++..|++++.+|. +|++.+++.+++..+ ++++++
T Consensus 130 -~~sGs~a~~~al--~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 130 -FSTGYMANLGII--STLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp -ESCHHHHHHHHH--HHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred -ecCcHHHHHHHH--HHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence 567777888773 334679999999999999999999999999888763 589999999986433 678888
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCc
Q 012628 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERI 313 (459)
Q Consensus 235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~Ri 313 (459)
+++++||||.+++ +++|.++|++||+++|+||+|..+.++.. ...+....+ ..+.++++.||||.+|++|
T Consensus 200 ~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~---g~~~~~~~~~~~~~di~~~s~sK~~g~~g--- 270 (427)
T 2w8t_A 200 LEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN---GRGVYEAQGLEGQIDFVVGTFSKSVGTVG--- 270 (427)
T ss_dssp EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT---SCCHHHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCchHhhcCCCcCCcEEEecchhhhccCC---
Confidence 9999999999976 78899999999999999999998776421 112222222 2245899999999999777
Q ss_pred ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012628 314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 393 (459)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 393 (459)
||+++ ++++++.+........ . ..+.+...+.++...|+.. +++++.+++++++++++.+.|+ ++|
T Consensus 271 G~v~~---~~~l~~~l~~~~~~~~-~-~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g- 336 (427)
T 2w8t_A 271 GFVVS---NHPKFEAVRLACRPYI-F-TASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARALHGGLK-AMG- 336 (427)
T ss_dssp EEEEE---CCTTGGGGGGTCHHHH-S-SCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHHHHHH-HHT-
T ss_pred CEEEe---CHHHHHHHHHhccccc-c-cCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHH-HcC-
Confidence 99866 6674443332111111 1 1233444434433333211 1136778899999999999999 876
Q ss_pred CCCcccc-cCCcceeeecCCC-----HHHHHHHHhcccEEEcCC---------C--cEEEccC-ChhhHHHHHHHHHHHH
Q 012628 394 GKDWSFI-LRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAGL-SLAKCEYLADAIIDSY 455 (459)
Q Consensus 394 ~~~~~~~-~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~~-~~e~i~~~~~~l~~~~ 455 (459)
+.+. .+..|.++|+.+. .++.+.|+++ ||.+.++ + ||+++.. +++++++++++|++++
T Consensus 337 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 337 ---FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp ---CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ---CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4655 4413445565432 2456677765 9998875 2 8998753 8999999999999998
Q ss_pred hhc
Q 012628 456 HNV 458 (459)
Q Consensus 456 ~~~ 458 (459)
+++
T Consensus 413 ~~~ 415 (427)
T 2w8t_A 413 RAV 415 (427)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 109
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.97 E-value=2.3e-29 Score=246.14 Aligned_cols=327 Identities=14% Similarity=0.030 Sum_probs=226.4
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
++++|||+.+.+ .. .++.+.+++.+.+.. ....|++.....++++.+++++. . +.+|++ |+||+
T Consensus 6 ~~~~id~~~~~~----~~--~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g-~------~~~v~~--~~~gt 69 (356)
T 1v72_A 6 RPPALGFSSDNI----AG--ASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE-R------DVEVFL--VPTGT 69 (356)
T ss_dssp CCCCCBCSCGGG----CC--CCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT-S------CCEEEE--ESCHH
T ss_pred CCceEeeccCCc----cC--CCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHhC-C------CCcEEE--eCCcc
Confidence 467899998765 32 378999999887632 23567666677888888888863 1 456888 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--hhhC--CCCeeeeeeecCCCCCCCHHHHHH-HHHcC----CCCcEE
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI--FNDA--RVPWSEYRYYDPKTVGLDFEGMIA-DIKAA----PGGSFI 232 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~--~~~~--G~~v~~v~~~~~~~~~~d~e~l~~-~i~~~----~~~~~~ 232 (459)
+++.++ +...+.+||+|+++.|+|..+... +... |++++.+|.+ ++.+|++++++ ++++. .+++++
T Consensus 70 ~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 70 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred HHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceE
Confidence 999988 333356999999999998766554 6666 9999999873 36899999999 88641 125788
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC
Q 012628 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA 310 (459)
Q Consensus 233 ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 310 (459)
+++++||| ||.+++.+++++|+++|++||+++|+|++|..+.. .+....... .....+ +++.|+||. +
T Consensus 145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~~~d-~~~~s~sK~-g--- 214 (356)
T 1v72_A 145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT----WKAGVD-ALSFGATKN-G--- 214 (356)
T ss_dssp EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT----GGGTCC-EEEECCGGG-T---
T ss_pred EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh----hhhcCC-EEEEecccC-C---
Confidence 88888987 99999999999999999999999999999864321 111111000 011223 445699998 3
Q ss_pred CCcc--eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012628 311 ERIG--AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 388 (459)
Q Consensus 311 ~RiG--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 388 (459)
.|+| |+++ +++.++.+...... ..........++..+...+.+.. | .+..++++++++++.+.|+
T Consensus 215 ~~~G~g~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~----~----~~~~~~~~~~~~~l~~~L~ 281 (356)
T 1v72_A 215 VLAAEAIVLF---NTSLATEMSYRRKR--AGHLSSKMRFLSAQIDAYLTDDL----W----LRNARKANAAAQRLAQGLE 281 (356)
T ss_dssp CSSCEEEEES---SGGGHHHHHHHHHH--TTCCCSSTHHHHHHHHHHTSTTH----H----HHHHHHHHHHHHHHHHHHT
T ss_pred CcCccEEEEE---CHHHHhhHHHHhhc--cCchhhhHHHHHHHHHHHHHhhh----H----HHHHHHHHHHHHHHHHHHh
Confidence 3577 5533 77766555432211 11111223334333445555432 2 3456677888899999998
Q ss_pred hcc-CCCCCcccccCCcceeeecCCCHHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 389 AKD-KSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 389 ~~~-g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
++ | +++..+.+++|+|+.+..++.++|.+ +||.+.+| + ||++... +++++++++++|++++++.
T Consensus 282 -~~~g----~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 282 -GLGG----VEVLGGTEANILFCRLDSAMIDALLK-AGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp -TCTT----EEEESCCCSSEEEEEECHHHHHHHHH-TTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred -hCCC----cEEccCCCccEEEEEcCHHHHHHHHh-cCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 75 4 56666777888888877777778765 59999865 3 9987643 7899999999999887653
No 110
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.97 E-value=4.8e-29 Score=247.51 Aligned_cols=327 Identities=12% Similarity=0.074 Sum_probs=225.4
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+...+|++.+.+....++ .+|.+.+++.+.+.... ...+.+..-..++++.+++++. ++++++ ++||
T Consensus 35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~v~~--~~~g 102 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGH--RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--------KEMVLP--MNTG 102 (392)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--------CSEEEE--ESSH
T ss_pred CCEEEEcCCChhhhccCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--------CCEEEE--eCcH
Confidence 356889998865222233 37899999998875421 1112244556788888888863 478999 9999
Q ss_pred hhHHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHHhhhCCCC-------------eeeeeeecCCCCCCCHHHH
Q 012628 161 TGSLRLAAALIERY--------FPGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGLDFEGM 219 (459)
Q Consensus 161 t~a~~l~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~G~~-------------v~~v~~~~~~~~~~d~e~l 219 (459)
+++++++.+++... ..||+|+++.|+|..+...+...+.. +..++. .|++++
T Consensus 103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 175 (392)
T 3ruy_A 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEAL 175 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHH
Confidence 99999986654332 23689999999997665444333221 222222 289999
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012628 220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (459)
Q Consensus 220 ~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~-l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (459)
++++++ +++++++++||||||.+++.++ +++|+++|++||+++|+||+|.+++..+. ..... ..+...+++
T Consensus 176 ~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~-~~~~~~d~~- 247 (392)
T 3ruy_A 176 KAAITP---NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFACD-WDNVTPDMY- 247 (392)
T ss_dssp HHHCCT---TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS---SSGGG-GGTCCCSEE-
T ss_pred HHHhcc---CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc---chhhh-ccCCCCCEE-
Confidence 999874 7889999999999999996555 99999999999999999999988875431 11111 112223443
Q ss_pred EEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012628 299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 377 (459)
||||.++ +| +|+||+++ +++ +.+.+.........+.+.+++.++...|+.. .+ ++.+++++
T Consensus 248 --~~SK~l~-gG~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~ 309 (392)
T 3ruy_A 248 --ILGKALG-GGVFPISCAAA---NRD----ILGVFEPGSHGSTFGGNPLACAVSIAALEVL------EE--EKLTERSL 309 (392)
T ss_dssp --EECGGGG-TTTSCCEEEEE---CHH----HHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--TTHHHHHH
T ss_pred --EEchhhh-CChhhhEEEEE---CHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHH------Hh--hhHHHHHH
Confidence 7789876 46 99999976 777 4444443333334466777777776665421 11 56788899
Q ss_pred HHHHHHHHHHhhccCCCCCcccccCCcceeeec--CCCHHHHHHHHhcccEEEcCCC----cEEEccC-ChhhHHHHHHH
Q 012628 378 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GLNKAQSDNMTNKWHVYMTKDG----RISLAGL-SLAKCEYLADA 450 (459)
Q Consensus 378 ~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~gg----Ris~~~~-~~e~i~~~~~~ 450 (459)
++++++.+.|+ +++.+ .+....+.++++.|. +...++.+.|.+ +||.+.|++ ||+++.. +++++++++++
T Consensus 310 ~~~~~l~~~L~-~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~ 386 (392)
T 3ruy_A 310 QLGEKLVGQLK-EIDNP-MITEVRGKGLFIGIELNEPARPYCEQLKA-AGLLCKETHENVIRIAPPLVISEEDLEWAFQK 386 (392)
T ss_dssp HHHHHHHHHHT-TCCCT-TEEEEEEETTEEEEEESSCSHHHHHHHHT-TTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCC-CceEEEeeeeEEEEEEcchHHHHHHHHHH-CCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999 87532 234455666666554 223556667665 699999986 8884432 89999999999
Q ss_pred HHHHHh
Q 012628 451 IIDSYH 456 (459)
Q Consensus 451 l~~~~~ 456 (459)
|+++++
T Consensus 387 l~~~l~ 392 (392)
T 3ruy_A 387 IKAVLS 392 (392)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998763
No 111
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.97 E-value=1.8e-29 Score=247.58 Aligned_cols=323 Identities=14% Similarity=0.038 Sum_probs=222.1
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
++++|+.| | .. .++.|.+++.+.+ .+.|.. ..+..++|+++++++. . +.+++++++ |+||+
T Consensus 4 ~~~~~~~g-p----~~--~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g-~---~~~~~~v~~--~~g~t 66 (366)
T 1m32_A 4 NYLLLTPG-P----LT--TSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALAT-A---SEGYTSVLL--QGSGS 66 (366)
T ss_dssp -CEECSSS-S----CC--CCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHC-S---SSSEEEEEE--ESCHH
T ss_pred ccccccCC-C----cC--CCHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHHHHhC-C---CCcCcEEEE--ecChH
Confidence 46888888 5 21 3788888876643 122321 1688999999999975 2 112357999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcC-CCCcc-hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISS-PTWGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~-p~y~~-~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~ 239 (459)
++++++. ...+.+||+|++++ |+|.. +...++..|++++.+|++ .++.+|++++++++++. .+++++++++|+
T Consensus 67 ~a~~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~ 141 (366)
T 1m32_A 67 YAVEAVL--GSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG--EVARPDVQAIDAILNAD-PTISHIAMVHSE 141 (366)
T ss_dssp HHHHHHH--HHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEE
T ss_pred HHHHHHH--HHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcC-CCeEEEEEeccc
Confidence 9999984 33356999988877 55543 667778889999999984 45679999999999863 245677789999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNV 318 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~ 318 (459)
||||.+++ +++|.++|++||+++|+||+|...... . . +...+.++++.|+||.+ +++| +||+++
T Consensus 142 nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~-----~----~~~~~~di~~~s~~K~~~~~~g--~G~~~~ 206 (366)
T 1m32_A 142 TTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP-M-----D----IAALHIDYLISSANKCIQGVPG--FAFVIA 206 (366)
T ss_dssp TTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C-----C----TTTTTCSEEEEESSSTTCCCSS--EEEEEE
T ss_pred CCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC-c-----c----ccccCccEEEecCcccccCCCc--eEEEEE
Confidence 99999977 778999999999999999998743321 1 1 11223578999999976 5444 799976
Q ss_pred EeCChhHHHHHHHH-----------HHhh-c--cccccCCchHHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHH
Q 012628 319 VCSSSDLAARVKSQ-----------LKRL-A--RPMYSNPPVHGARIVANVVGNPALFDEWKAE--MEMMAGRIKNVRQK 382 (459)
Q Consensus 319 v~~~~~~~~~~~~~-----------~~~~-~--~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~ 382 (459)
+++..+.+... .... . .....+++..++.++...|+. +.+. +++.++++++++++
T Consensus 207 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~~~~ 277 (366)
T 1m32_A 207 ---REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE------LAKEGGVAARHQRYQQNQRS 277 (366)
T ss_dssp ---EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH------HHHHTHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH------HHHccCHhHHHHHHHHHHHH
Confidence 66643332210 0000 0 000124455555444444321 1222 56788999999999
Q ss_pred HHHHHhhccCCCCCcccccC---CcceeeecC------CCH-HHHHHHHhcccEEEcCCC-------cEEEccC-ChhhH
Q 012628 383 LFDSLSAKDKSGKDWSFILR---QIGMFSFTG------LNK-AQSDNMTNKWHVYMTKDG-------RISLAGL-SLAKC 444 (459)
Q Consensus 383 l~~~L~~~~g~~~~~~~~~~---~~g~f~~~~------l~~-~~~~~ll~~~gI~v~~gg-------Ris~~~~-~~e~i 444 (459)
+.+.|+ ++| +++..+ .+++++|+. .+. ++.+.|.+ +||.+.+|. ||+++.. +++++
T Consensus 278 l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~iRi~~~~~~~~~~i 351 (366)
T 1m32_A 278 LVAGMR-ALG----FNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKE-QGFVIYPGKVSQSDCFRIGNIGEVYAADI 351 (366)
T ss_dssp HHHHHH-HTT----CCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHH-TTEECEECCCSSSCEEEEECCSSCCHHHH
T ss_pred HHHHHH-HCC----CeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHH-CCEEEECCcCCCCCEEEEecCCCCCHHHH
Confidence 999999 776 454443 356566653 234 44556665 599998862 9998865 78999
Q ss_pred HHHHHHHHHHHhhc
Q 012628 445 EYLADAIIDSYHNV 458 (459)
Q Consensus 445 ~~~~~~l~~~~~~~ 458 (459)
++++++|+++++++
T Consensus 352 ~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 352 TALLTAIRTAMYWT 365 (366)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998765
No 112
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.97 E-value=3.7e-28 Score=246.08 Aligned_cols=335 Identities=12% Similarity=0.081 Sum_probs=223.0
Q ss_pred CCCceeecccc-cCCCCCCc---cCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeec
Q 012628 82 DEKKLNLGVGA-YRTEELQP---YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (459)
Q Consensus 82 ~~~~i~l~~g~-~~~~~~~~---~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (459)
+.++++|+.|. |+|..... .+++.+.+++. .+ ...|.+..+..+||+++++++.. +++++ |
T Consensus 32 g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~-~~~y~~~~~~~~l~~~la~~~~~--------~~~~~--~ 96 (456)
T 2ez2_A 32 GYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MG-DEAYAGSENFYHLERTVQELFGF--------KHIVP--T 96 (456)
T ss_dssp TTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TC-CCCSSSCHHHHHHHHHHHHHHCC--------SEEEE--E
T ss_pred CCCcccCCcccceeeeccccCCccCCHHHHHHhh----cc-hhhcccChhHHHHHHHHHHHhCC--------CcEEE--e
Confidence 45778888886 34432221 23566666654 22 25688888999999999999743 46888 9
Q ss_pred ccchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHhhhCCCCeeeeeeecC----C----CCCCCHHHHHHHHHcCC-
Q 012628 158 LSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDP----K----TVGLDFEGMIADIKAAP- 227 (459)
Q Consensus 158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~~~~G~~v~~v~~~~~----~----~~~~d~e~l~~~i~~~~- 227 (459)
+||+++++++.+. .+.+|| +++.|+| ..+...++..|++++.++++++ . ++.+|+++|++++++..
T Consensus 97 ~~gt~a~~~al~~--l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~ 172 (456)
T 2ez2_A 97 HQGRGAENLLSQL--AIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA 172 (456)
T ss_dssp SSHHHHHHHHHHH--HCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG
T ss_pred CCcHHHHHHHHHH--hCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc
Confidence 9999999998433 367999 8889999 7778889999999999998521 1 36889999999998621
Q ss_pred CCcEEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHHhcCCeE
Q 012628 228 GGSFILLHGCAHN-PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFATRGMEL 296 (459)
Q Consensus 228 ~~~~~ii~~~p~N-PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~ 296 (459)
...+++++++|+| |||.+++.+++++|+++|++||+++|+||+|.. +.+.+ .....+........++
T Consensus 173 ~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d~ 250 (456)
T 2ez2_A 173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSYADG 250 (456)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCSE
T ss_pred cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhcccCCE
Confidence 1237888899999 999999999999999999999999999999875 33432 1111111011223445
Q ss_pred EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcc-ccccCCchHHHHH-HHHHhCChhhHHHHHHHH-HHHH
Q 012628 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR-PMYSNPPVHGARI-VANVVGNPALFDEWKAEM-EMMA 373 (459)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~L~~~~~~~~~~~~~-~~~~ 373 (459)
+++ |++|.++ +| |.||+ ++.++++++.+......... ..+.+.+.....+ +...+ +.+ +...
T Consensus 251 ~~~-S~kk~~~-~~-~gG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~----------~~~~~~~~ 315 (456)
T 2ez2_A 251 CTM-SGKKDCL-VN-IGGFL--CMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR----------EAMQYEYI 315 (456)
T ss_dssp EEE-ETTTTTC-CS-SCEEE--EESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH----------HHTCHHHH
T ss_pred EEE-eCcccCC-CC-ceeEE--EECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH----------HHhHHHHH
Confidence 544 7888766 67 78998 34467755554432221110 0111222222222 22221 111 2334
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-------C-HHH-----HHHHHhcccEEEcC-C--------
Q 012628 374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------N-KAQ-----SDNMTNKWHVYMTK-D-------- 431 (459)
Q Consensus 374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------~-~~~-----~~~ll~~~gI~v~~-g-------- 431 (459)
++.+++.+++.+.|+ +.| +++..+.+++++|+.+ + .++ ..+|++++||.+.+ |
T Consensus 316 ~~~~~~~~~l~~~L~-~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~ 390 (456)
T 2ez2_A 316 EHRVKQVRYLGDKLK-AAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNN 390 (456)
T ss_dssp HHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCT
T ss_pred HHHHHHHHHHHHHHh-cCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCc
Confidence 444556677888888 665 4666777888887542 2 233 55565667997533 1
Q ss_pred ----------C--cEEEcc--CChhhHHHHHHHHHHHHhh
Q 012628 432 ----------G--RISLAG--LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 432 ----------g--Ris~~~--~~~e~i~~~~~~l~~~~~~ 457 (459)
+ ||+++. .+++++++++++|++++++
T Consensus 391 ~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 391 VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp TTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 3 899874 4899999999999998875
No 113
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=1.5e-28 Score=245.56 Aligned_cols=323 Identities=12% Similarity=-0.001 Sum_probs=221.5
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC--CCCC----CCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKE----YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~----Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
+...+||+...|+ +.+. +|.+.+++.+.+... .... |+......++++++++++.. +..++
T Consensus 58 g~~~ld~~s~~~l---~~~~-~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~-- 124 (409)
T 3kki_A 58 SPDDIILQSNDYL---ALAN-HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF-------DECLL-- 124 (409)
T ss_dssp CTTSEECCCSCTT---CCTT-CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC-------SEEEE--
T ss_pred CCceEEeeccCcc---CCcC-CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC-------CeEEE--
Confidence 4578999887663 3333 788999998888641 1112 22234467899999998643 23344
Q ss_pred ecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
+.+|++++..+ +...+.+||.|+++.|+|..+...++..|++++.++. .|++++++.+++. +++++++
T Consensus 125 -~~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~--~~~~vi~ 192 (409)
T 3kki_A 125 -SQSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH--GPGIIVV 192 (409)
T ss_dssp -ESCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH--CSCEEEE
T ss_pred -ecchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc--CCeEEEE
Confidence 46667998887 4444779999999999999999999999999887754 5899999999862 4678888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcc
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG 314 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG 314 (459)
++|+||||.+++ +++|+++|++||+++|+||+|....++. .........+. .+.++++.||||.++++| |
T Consensus 193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~---~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g 263 (409)
T 3kki_A 193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGP---NGAGLLAELGLTREVHFMTASLAKTFAYRA---G 263 (409)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---E
T ss_pred CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCcchhhcCCCCCCCEEEeecchhhCCCc---e
Confidence 999999999977 8889999999999999999998744431 11111121221 234688999999999664 8
Q ss_pred eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012628 315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 394 (459)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 394 (459)
|+++ +++.++.+......... ....+..++.++...++ .. ++.++.+++++++++++.+.|+ ++|
T Consensus 264 ~v~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~aa~~aal~---~~----~~~~~~~~~~~~~~~~l~~~L~-~~g-- 328 (409)
T 3kki_A 264 AIWC---NNEVNRCVPFISYPAIF--SSTLLPYEAAGLETTLE---II----ESADNRRQHLDRMARKLRIGLS-QLG-- 328 (409)
T ss_dssp EEEE---SSSGGGTHHHHCHHHHH--SBCCCHHHHHHHHHHHH---HH----HHCHHHHHHHHHHHHHHHHHHH-TTT--
T ss_pred EEEE---CHHHHHHHHHhCcCccc--cCCCcHHHHHHHHHHHH---HH----hcCHHHHHHHHHHHHHHHHHHH-HcC--
Confidence 8865 66755544432111111 11233333333333332 11 1225778899999999999999 886
Q ss_pred CCcccccCCcceeeecCC-----CHHHHHHHHhcccEEEcC-------CC----cEEEcc-CChhhHHHHHHHHHHHHhh
Q 012628 395 KDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTK-------DG----RISLAG-LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 395 ~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~~~~ 457 (459)
+.+. + .+.++|+.+ ..++.+.|+++ ||.+.+ .| ||+++. .+++++++++++|+++++.
T Consensus 329 --~~~~-~-~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 329 --LTIR-S-ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp --CCCC-C-SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CccC-C-CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 4544 3 455666543 22456677775 999853 22 999874 3889999999999999875
Q ss_pred c
Q 012628 458 V 458 (459)
Q Consensus 458 ~ 458 (459)
.
T Consensus 404 ~ 404 (409)
T 3kki_A 404 G 404 (409)
T ss_dssp S
T ss_pred C
Confidence 3
No 114
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.97 E-value=4.9e-29 Score=245.80 Aligned_cols=319 Identities=12% Similarity=0.032 Sum_probs=215.5
Q ss_pred CCCCCCccCcHHHHHHHHHHhhcCCC---CCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHH
Q 012628 94 RTEELQPYVLDVVKKAENLMLERGEN---KEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL 166 (459)
Q Consensus 94 ~~~~~~~~~~~~v~~a~~~~~~~~~~---~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l 166 (459)
+|..+..++++.+.+++.+.+..... ..|. ......++++.+++++.. ++++|++ |+|+++++++
T Consensus 4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~i~~--~~g~~~a~~~ 75 (382)
T 4hvk_A 4 FDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG------GGGTVVF--TSGATEANNL 75 (382)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC------TTEEEEE--ESSHHHHHHH
T ss_pred ecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE--ECCchHHHHH
Confidence 34444445589999999988854211 0111 122345788888888643 2678999 9999999999
Q ss_pred HHHHHHHh----CCCCEEEEcCCCCcchHHHhhh---CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012628 167 AAALIERY----FPGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (459)
Q Consensus 167 ~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~~---~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~ 239 (459)
+...+ . .+||+|++++|+|+.+...+.. .|++++.+|++ +++.+|++++++++++ +++++++++||
T Consensus 76 ~~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~ 148 (382)
T 4hvk_A 76 AIIGY--AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLRD---DTILVSVQHAN 148 (382)
T ss_dssp HHHHH--HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCCT---TEEEEECCSBC
T ss_pred HHHHh--hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhcc---CceEEEEECCC
Confidence 84433 4 7999999999999988765554 69999999984 4678999999999975 78899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
||||.+.+ +++|.++|++||+ +|+|++|.. +... . .. ...+.++++.|+||.+|++| +|++++
T Consensus 149 nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~-~~~~--~---~~----~~~~~d~~~~s~~K~~g~~g--~g~~~~- 211 (382)
T 4hvk_A 149 NEIGTIQP---VEEISEVLAGKAA-LHIDATASV-GQIE--V---DV----EKIGADMLTISSNDIYGPKG--VGALWI- 211 (382)
T ss_dssp TTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB-TTBC--C---CH----HHHTCSEEEEESGGGTSCTT--CEEEEE-
T ss_pred CCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc-CCCC--C---Cc----hhcCCCEEEEeHHHhcCCCc--eEEEEE-
Confidence 99999965 6689999999999 999999653 2211 1 11 11235689999999988777 788754
Q ss_pred eCChhHHHHHHHHHHh---hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 012628 320 CSSSDLAARVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 396 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 396 (459)
+++. .+...+.. ........++..++.++...+. + +.+.+++.+++++++++++.+.|+ +++ +
T Consensus 212 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~---~ 277 (382)
T 4hvk_A 212 --RKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE---I---TAMEWREEAERLRRLRDRIIDNVL-KIE---E 277 (382)
T ss_dssp --ETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHT-TST---T
T ss_pred --cCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH---H---HHhhHHHHHHHHHHHHHHHHHHHh-cCC---C
Confidence 2221 01110000 0001122334444444433332 1 134568889999999999999999 763 1
Q ss_pred cccccCCc----ceeee--cCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEEccC-Chh
Q 012628 397 WSFILRQI----GMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAGL-SLA 442 (459)
Q Consensus 397 ~~~~~~~~----g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~~-~~e 442 (459)
+.+..+.+ +++.+ .+.+.+.+...++++||.+.+| + ||+++.. +++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e 357 (382)
T 4hvk_A 278 SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDE 357 (382)
T ss_dssp EEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHH
T ss_pred eEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHH
Confidence 45554443 22222 2455555444445569999875 3 9998854 789
Q ss_pred hHHHHHHHHHHHHhhc
Q 012628 443 KCEYLADAIIDSYHNV 458 (459)
Q Consensus 443 ~i~~~~~~l~~~~~~~ 458 (459)
++++++++|+++++++
T Consensus 358 ~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 358 DVDRLLEVLPGVIERL 373 (382)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 115
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.97 E-value=3.9e-29 Score=248.41 Aligned_cols=334 Identities=13% Similarity=0.075 Sum_probs=223.3
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
...+||+.|.+.+..++ .++.+.+++.+.+.... ...| +.....++++.+++++.. .+++|++ |+||
T Consensus 45 ~~~ld~~~~~~~~~~g~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~gg 113 (395)
T 1vef_A 45 NEYIDCVGGYGVANLGH--GNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPP------ELNRVFP--VNSG 113 (395)
T ss_dssp CEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCT------TEEEEEE--ESSH
T ss_pred CEEEEccCccccccCCC--CCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCC------CcCEEEE--cCcH
Confidence 46789998875333233 37899999998885421 1124 555677888888887431 2678999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHhhhCCCCeee---eeeecCC--CCCCCHHHHHHHHHcCCCCcEEEE
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDARVPWSE---YRYYDPK--TVGLDFEGMIADIKAAPGGSFILL 234 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~G~~v~~---v~~~~~~--~~~~d~e~l~~~i~~~~~~~~~ii 234 (459)
+++++++.+.+..+.+||+|++++|+|.. +...+...|.+++. +|+..+. -...|++++++++++ ++++++
T Consensus 114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~---~~~~v~ 190 (395)
T 1vef_A 114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE---ETAAVI 190 (395)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT---TEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc---CEEEEE
Confidence 99999985543223588999999999965 45566667775321 1221000 001489999999875 678888
Q ss_pred eCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc
Q 012628 235 HGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (459)
Q Consensus 235 ~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (459)
+++++||||.+ .+.+++++|+++|++||+++|+||+|.+++..+. ...+.. .....+++ ||||.++. |+|+
T Consensus 191 ~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~---~~~~~~-~~~~~d~~---s~sK~~~~-g~~~ 262 (395)
T 1vef_A 191 LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEH-FGIVPDIL---TLAKALGG-GVPL 262 (395)
T ss_dssp ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHH-HTCCCSEE---EECGGGGT-TSSC
T ss_pred EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc---hhHhhh-cCCCCCEE---EEcccccC-CCce
Confidence 77778999976 4788899999999999999999999997754321 111211 22233433 88999995 9999
Q ss_pred ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012628 314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 393 (459)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 393 (459)
||+++ +++. .+.+.........+++.+++.++...|+.. .+ +...++++++++++.+.|+ +++.
T Consensus 263 G~~~~---~~~~----~~~l~~~~~~~~~~~~~~~~~a~~~al~~~------~~--~~~~~~~~~~~~~l~~~l~-~~~~ 326 (395)
T 1vef_A 263 GVAVM---REEV----ARSMPKGGHGTTFGGNPLAMAAGVAAIRYL------ER--TRLWERAAELGPWFMEKLR-AIPS 326 (395)
T ss_dssp EEEEE---EHHH----HHTSCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--HTTHHHHHHHHHHHHHHHH-TSCC
T ss_pred EEEEe---hHHH----HhhhccCCcCCCcCCCHHHHHHHHHHHHHH------Hh--CCHHHHHHHHHHHHHHHHH-Hhhc
Confidence 99976 6663 333322112223355666666665554321 11 3467788889999999998 8753
Q ss_pred CCCcccccCCcceeeecCC---CHHHHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHHh
Q 012628 394 GKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 394 ~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~~ 456 (459)
+. +... +..|+|+|+.+ ..++.+.|++++||.+.+++ ||+++. .+++++++++++|+++++
T Consensus 327 ~~-~~~~-~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 327 PK-IREV-RGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp TT-EEEE-EEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred Cc-eEEE-EEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 11 1112 23455666544 45667788735699999875 887653 389999999999998763
No 116
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.97 E-value=4.9e-29 Score=250.64 Aligned_cols=346 Identities=12% Similarity=0.006 Sum_probs=208.0
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+|++.|.+.+..+.. +|.+.+++.+.++.. ..|.+..+..+.++++++++....+ ..+++|++ |+||+
T Consensus 28 g~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg~ 99 (430)
T 3i4j_A 28 GRRYLDGSSGALVANIGHG--RAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VSGGS 99 (430)
T ss_dssp SCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ESSHH
T ss_pred CCEEEECCCchhccccCCC--CHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCcHH
Confidence 3468899998664444543 789999998887652 2233333444555555555444333 23678999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCC---------------CeeeeeeecCCC---CCCCHH
Q 012628 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV---------------PWSEYRYYDPKT---VGLDFE 217 (459)
Q Consensus 162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~---------------~v~~v~~~~~~~---~~~d~e 217 (459)
++++.+.+++... .++++|++.+|+|..+.......+. .+..+|.. +. +..|++
T Consensus 100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 177 (430)
T 3i4j_A 100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKP--DPARNGAEDAE 177 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCC--CTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCC--cccchhhHHHH
Confidence 9999986655433 4578999999999987765544433 33344431 11 223668
Q ss_pred HHHHHHHcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcC
Q 012628 218 GMIADIKAAP-GGSFILLHGCAHN-PTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRG 293 (459)
Q Consensus 218 ~l~~~i~~~~-~~~~~ii~~~p~N-PTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~-~~~ 293 (459)
.|++.++... +.+++++++.+|| ++|. +++++.+++|.++|++||+++|+||+|.+++..+. ...... . +..
T Consensus 178 ~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~-~~~~~ 253 (430)
T 3i4j_A 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSR-WSGVT 253 (430)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-TTTCC
T ss_pred HHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhh-hcCCC
Confidence 8998887421 2556666666677 8886 67888899999999999999999999998875431 112211 1 222
Q ss_pred CeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012628 294 MELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM 372 (459)
Q Consensus 294 ~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 372 (459)
++++ +|||.++ .| +|+||+++ +++.++.+...........+.+.+.++|.++...|+...- .+.+++.
T Consensus 254 ~di~---t~sK~l~-~G~~r~G~~~~---~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~ 322 (430)
T 3i4j_A 254 PDIA---VLGKGLA-AGYAPLAGLLA---APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER----EDLTGAA 322 (430)
T ss_dssp CSEE---EECGGGT-TTSSCCEEEEE---CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH----TTHHHHH
T ss_pred CcEE---EEccccc-CCccccEEEEE---CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc----ccHHHHH
Confidence 3333 7899999 59 99999976 8884443332100012223336677787777666642110 1112344
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-C-------------HHHHHHHHhcccEEEcCC-------
Q 012628 373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N-------------KAQSDNMTNKWHVYMTKD------- 431 (459)
Q Consensus 373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-~-------------~~~~~~ll~~~gI~v~~g------- 431 (459)
++..+..++.|.+.+. +++. +..+.+.|. |+++.+ + .++.+.+++ +||.+.|+
T Consensus 323 ~~~~~~~~~~l~~~~~-~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~ 396 (430)
T 3i4j_A 323 KERGAQLLAGLQALQA-RFPQ---MMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGSGAEPNG 396 (430)
T ss_dssp HHHHHHHHHHHHHHHH-HCTT---EEEEEEETT-EEEEEEC------------CHHHHHHHHHH-TTEECC---------
T ss_pred HHHHHHHHHHHHHHHH-hCCC---eEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecccccCCC
Confidence 4444444444444443 4321 344555554 444322 1 245666765 59999987
Q ss_pred -C---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 432 -G---RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 -g---Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
+ ||+++. .+++++++++++|+++++++
T Consensus 397 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 397 RGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp --CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 888762 38999999999999998864
No 117
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.97 E-value=4.7e-29 Score=248.11 Aligned_cols=325 Identities=11% Similarity=0.086 Sum_probs=220.0
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+...+||+.|.+-+..++ .+|.+.+++.+.++.... ..| +.....++++.+++++ | ++++++ |+|
T Consensus 39 g~~~ld~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~g 105 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGH--SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT----F----GGKVFF--ANT 105 (397)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT----T----SCEEEE--ESS
T ss_pred CCEEEECCccccccccCC--CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc----C----CCeEEE--eCC
Confidence 346789988843222233 378899999888754211 113 3344566777777764 2 478988 999
Q ss_pred chhHHHHHHHHHHHhC----C-CCEEEEcCCCCcc-hHHHhhhCCCC------------eeeeeeecCCCCCCCHHHHHH
Q 012628 160 GTGSLRLAAALIERYF----P-GAKVLISSPTWGN-HKNIFNDARVP------------WSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~----~-gd~Vlv~~p~y~~-~~~~~~~~G~~------------v~~v~~~~~~~~~~d~e~l~~ 221 (459)
|++++.++.+.+.... + +++|++++|+|.. +...++..|.+ ++.+|. .|++.+++
T Consensus 106 g~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~ 178 (397)
T 2ord_A 106 GTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRR 178 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHH
Confidence 9999999855442221 4 4789999999965 44466777765 555543 28999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012628 222 DIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (459)
++++ +++++++++||||||. +++.+++++|+++|++||+++|+||+|.++++.+ ....+..+ +...+++
T Consensus 179 ~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~-~~~~d~~--- 248 (397)
T 2ord_A 179 KMSE---DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG---KLFAYQKY-GVVPDVL--- 248 (397)
T ss_dssp HCCT---TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHHHH-TCCCSEE---
T ss_pred Hhhc---CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc---cchhhhhh-CCCCCee---
Confidence 8875 7889999999999999 9999999999999999999999999998876542 12222222 2223433
Q ss_pred cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012628 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 380 (459)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 380 (459)
||||.++ +|+|+||+++ +++. . .+.........+.+.+++.++...|+.. .+ ++.++++++++
T Consensus 249 s~sK~~~-~G~r~G~~~~---~~~~----~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~ 311 (397)
T 2ord_A 249 TTAKGLG-GGVPIGAVIV---NERA----N-VLEPGDHGTTFGGNPLACRAGVTVIKEL------TK--EGFLEEVEEKG 311 (397)
T ss_dssp EECGGGG-TTSCCEEEEE---CSTT----C-CCCTTSSCCSSTTCHHHHHHHHHHHHHH------TS--TTHHHHHHHHH
T ss_pred eeccccC-CCcCeEEEEE---chHh----c-ccCCCCcCCCCCCCHHHHHHHHHHHHHH------Hh--CCHHHHHHHHH
Confidence 8899999 8999999965 5552 2 2222122223356677777666555321 11 35677888888
Q ss_pred HHHHHHHhhcc--CCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHHHHH
Q 012628 381 QKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLA 448 (459)
Q Consensus 381 ~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~~~~ 448 (459)
+++.+.|+ ++ +++. +....+.+ .|+|+.+ +. ++.+.|++ +||.+.+++ ||+++ ..+++++++++
T Consensus 312 ~~l~~~L~-~~~~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~iRis~~~~~~~e~i~~~~ 387 (397)
T 2ord_A 312 NYLMKKLQ-EMKEEYDV-VADVRGMG-LMIGIQFREEVSNREVATKCFE-NKLLVVPAGNNTIRFLPPLTVEYGEIDLAV 387 (397)
T ss_dssp HHHHHHHH-HHHHHCTT-EEEEEEET-TEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHHH-HHHHhCCc-eEEEEEEe-EEEEEEECChHHHHHHHHHHHH-CCCEEccCCCCEEEEECCcCCCHHHHHHHH
Confidence 88888888 65 2221 11223444 4545432 23 45666666 699999875 88854 23899999999
Q ss_pred HHHHHHHhh
Q 012628 449 DAIIDSYHN 457 (459)
Q Consensus 449 ~~l~~~~~~ 457 (459)
++|++++++
T Consensus 388 ~~l~~~l~~ 396 (397)
T 2ord_A 388 ETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998875
No 118
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=5.9e-29 Score=247.92 Aligned_cols=323 Identities=14% Similarity=0.035 Sum_probs=220.8
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCC---CCCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEee
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (459)
+.+.|..+.+ . +.++.+.+++.+.+.... ...|. +..+..++|+++++++.. ++++|++
T Consensus 26 ~~~~ld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~-- 91 (406)
T 3cai_A 26 GWVHFDAPAG----M--LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNA------DPGGVVL-- 91 (406)
T ss_dssp SCEECBGGGC----C--CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE--
T ss_pred CeEEEeCCCc----C--CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--
Confidence 4677777765 2 348899999988875421 11232 245678999999999743 2678999
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhh----CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF 231 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~----~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 231 (459)
|+|++++++++...+. .+.+||+|+++.|+|..+...+.. .|++++.+|++ ++++.+|++++++++++ +++
T Consensus 92 ~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~l~~---~~~ 167 (406)
T 3cai_A 92 GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD-IETGELPTWQWESLISK---STR 167 (406)
T ss_dssp ESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC-TTTCCCCGGGHHHHCCT---TEE
T ss_pred eCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC-cccCCcCHHHHHHHhCC---Cce
Confidence 9999999999743221 157999999999999876555443 69999999985 24677999999999975 788
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012628 232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (459)
Q Consensus 232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (459)
++++++|+||||.+++ +++|.++|+++|+++|+|++|.... .. .+ +.. .+.++++.|+||.+| ++
T Consensus 168 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~-~~--~~---~~~----~~~d~~~~s~~K~~g-~~- 232 (406)
T 3cai_A 168 LVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY-RL--LD---IRE----TDADVVTVNAHAWGG-PP- 232 (406)
T ss_dssp EEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT-CC--CC---HHH----HCCSEEEEEGGGGTS-CS-
T ss_pred EEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC-CC--CC---chh----cCCCEEEeehhhhcC-CC-
Confidence 9999999999999976 6789999999999999999976322 11 11 111 135788999999887 54
Q ss_pred Ccc-eEEEEeCChhHHHHHHHHHHhhcc---------ccccCCchHHHHHHHHHh---CChh------hHHHHHHHHHHH
Q 012628 312 RIG-AMNVVCSSSDLAARVKSQLKRLAR---------PMYSNPPVHGARIVANVV---GNPA------LFDEWKAEMEMM 372 (459)
Q Consensus 312 RiG-~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~L---~~~~------~~~~~~~~~~~~ 372 (459)
+| |+++ +++ +.+.+..... ....+++..++.++...+ .+.+ ...+|.+.++++
T Consensus 233 -~G~~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~ 304 (406)
T 3cai_A 233 -IGAMVFR---DPS----VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSA 304 (406)
T ss_dssp -CEEEEES---CHH----HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHH
T ss_pred -cCeEEEE---ehH----HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHH
Confidence 89 8755 666 3333322210 111233444333332222 2100 112234457888
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcccccCC---cceeeec---CCCHHH-HHHHHhcccEEEcCC--------------
Q 012628 373 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT---GLNKAQ-SDNMTNKWHVYMTKD-------------- 431 (459)
Q Consensus 373 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~---~g~f~~~---~l~~~~-~~~ll~~~gI~v~~g-------------- 431 (459)
+++++++++++.+.|+ +++ ++++..+. +++ +++ +.+.+. .+.|. ++||.+.+|
T Consensus 305 ~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~-~~gi~v~~g~~~~~~~~~g~~~~ 378 (406)
T 3cai_A 305 DAYLNRVFDYLMVSLR-SLP---LVMLIGRPEAQIPV-VSFAVHKVPADRVVQRLA-DNGILAIANTGSRVLDVLGVNDV 378 (406)
T ss_dssp HHHHHHHHHHHHHHHH-TCT---TEEECCCCSSBCSE-EEEEETTBCHHHHHHHHH-HTTEECEECCSCHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHh-cCC---CeEEcCCccccCCE-EEEEECCcCHHHHHHHHH-HCCcEEecCChHHHHHHcCCCCC
Confidence 9999999999999999 762 15555543 443 333 344544 45554 479998763
Q ss_pred -C--cEEEccC-ChhhHHHHHHHHHH
Q 012628 432 -G--RISLAGL-SLAKCEYLADAIID 453 (459)
Q Consensus 432 -g--Ris~~~~-~~e~i~~~~~~l~~ 453 (459)
+ ||+++.. +++++++++++|++
T Consensus 379 ~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 379 GGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 3 9998864 68999999999875
No 119
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.3e-28 Score=246.71 Aligned_cols=331 Identities=11% Similarity=0.016 Sum_probs=216.6
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC---CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
...+|++.|.+..+-+++ .+|.|.+++.+.++.... ..| +.....++++.+++++ +... +++|++ |+|
T Consensus 42 ~~~lD~~~~~~~~~lG~~-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----~~~~-~~~v~~--~~g 112 (419)
T 2eo5_A 42 NKYLDFTSGIGVNNLGWP-SHPEVIKIGIEQMQKLAHAAANDF-YNIPQLELAKKLVTYS----PGNF-QKKVFF--SNS 112 (419)
T ss_dssp CEEEESSGGGGTTTTCBS-CCHHHHHHHHHHHTTSCCCSCSCS-CCHHHHHHHHHHHHHS----SCSS-CEEEEE--ESS
T ss_pred CEEEEccCChhhhccCCC-CCHHHHHHHHHHHhhCcccccccc-CCHHHHHHHHHHHHhC----CCCc-CCEEEE--eCc
Confidence 467899988852222322 168899999988864321 113 3333456666666664 3222 578999 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HhhhC-------------CCCeeeeeeecCC--CCC----------
Q 012628 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDA-------------RVPWSEYRYYDPK--TVG---------- 213 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~-------------G~~v~~v~~~~~~--~~~---------- 213 (459)
|+++++++.+++..+ +||+|++++|+|.++.. ..... +.+++.+|..+.. .++
T Consensus 113 g~ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~ 191 (419)
T 2eo5_A 113 GTEAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL 191 (419)
T ss_dssp HHHHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred hHHHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhh
Confidence 999999986543222 48999999999975433 22111 2356777773211 112
Q ss_pred --CCHHHHH-HHHHcCC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012628 214 --LDFEGMI-ADIKAAP--GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287 (459)
Q Consensus 214 --~d~e~l~-~~i~~~~--~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~ 287 (459)
+|+++++ +++++.. +++++++++..|||||. +++++.+++|.++|++||+++|+||+|.+++..+. ...+.
T Consensus 192 ~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~~~ 268 (419)
T 2eo5_A 192 VNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAIE 268 (419)
T ss_dssp HHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhhHH
Confidence 4688999 8887421 24556664444567896 77899999999999999999999999998875421 11111
Q ss_pred HHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHH
Q 012628 288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK 366 (459)
Q Consensus 288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 366 (459)
.....++++ ||||.|+ .| +|+||+++ +++.+ .+ .. .... +.+.+.+++.++...|+.
T Consensus 269 -~~~~~~d~~---t~sK~~~-~G~~riG~~~~---~~~~~-~~-~~---~~~~-t~~~n~~~~~aa~aal~~-------- 326 (419)
T 2eo5_A 269 -NFNTVPDVI---TLAKALG-GGIMPIGATIF---RKDLD-FK-PG---MHSN-TFGGNALACAIGSKVIDI-------- 326 (419)
T ss_dssp -GGTCCCSEE---EECGGGG-TTTSCCEEEEE---EGGGC-CC-----------CCCCCHHHHHHHHHHHHH--------
T ss_pred -hcCCCCCEE---Eeccccc-CCccceEEEEE---chHhh-cC-Cc---ccCC-CCCCCHHHHHHHHHHHHH--------
Confidence 122234433 8999999 59 99999976 66644 33 21 1122 335677777777666532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-C----HHHHHHHHhcccEEEcCCC----cEEEc
Q 012628 367 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N----KAQSDNMTNKWHVYMTKDG----RISLA 437 (459)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-~----~~~~~~ll~~~gI~v~~gg----Ris~~ 437 (459)
+++.+++++++++++.+.|+ ++ +..+.+. |.|+|+.+ . .++.+.|++ +||.+.++| ||+++
T Consensus 327 --~~~~~~~~~~~~~~l~~~L~-~~-----~~~~~~~-g~~~~i~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~lRis~~ 396 (419)
T 2eo5_A 327 --VKDLLPHVNEIGKIFAEELQ-GL-----ADDVRGI-GLAWGLEYNEKKVRDRIIGESFK-RGLLLLPAGRSAIRVIPP 396 (419)
T ss_dssp --HHHHHHHHHHHHHHHHHHHT-TS-----SSEEEEE-TTEEEEECSCHHHHHHHHHHHHH-TTEECEEETTTEEEECCC
T ss_pred --HHHHHHHHHHHHHHHHHHHH-Hh-----hhheEee-eEEEEEEEecCccHHHHHHHHHH-CCCEEecCCCCEEEEECC
Confidence 22377888999999999998 75 2334455 45556555 2 234556664 699999864 88765
Q ss_pred c-CChhhHHHHHHHHHHHHhhc
Q 012628 438 G-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 ~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
. .+++++++++++|+++++++
T Consensus 397 ~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 397 LVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 2 28999999999999998765
No 120
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=5e-29 Score=246.95 Aligned_cols=312 Identities=11% Similarity=0.090 Sum_probs=214.8
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCE
Q 012628 102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK 179 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~ 179 (459)
+++.+.+++.+... ..|.+ .....++++.+++++.... +++|++ |+||++++.++. ...+.+||+
T Consensus 34 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~~-----~~~v~~--~~gg~~al~~~~--~~~~~~gd~ 100 (393)
T 3kgw_A 34 LAPRVLAAGSLRMI----GHMQKEMLQIMEEIKQGIQYVFQTRN-----PLTLVV--SGSGHCAMETAL--FNLLEPGDS 100 (393)
T ss_dssp CCHHHHHHTTCCCC----CTTSHHHHHHHHHHHHHHHHHHTCCC-----SEEEEE--SCCTTTHHHHHH--HHHCCTTCE
T ss_pred CCHHHHHHhccccc----CcccHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE--eCCcHHHHHHHH--HhcCCCCCE
Confidence 47888887765331 12222 3455788889998875431 345888 999999999984 344779999
Q ss_pred EEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012628 180 VLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (459)
Q Consensus 180 Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l 257 (459)
|+++.++|.. +...++..|++++.+|++ .++.+|++++++++++ .+++++++++||||||.+++ +++|.++
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l 173 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARVHQMIKK--PGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFGEL 173 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred EEEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHHHH
Confidence 9999988753 367788899999999984 3557999999999985 25667888999999999976 7789999
Q ss_pred HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhh
Q 012628 258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRL 336 (459)
Q Consensus 258 ~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~ 336 (459)
|++||+++|+||+|...... .+ ....+.++++.|+||.+ |++| +||+++ +++.++.+.......
T Consensus 174 ~~~~~~~li~De~~~~g~~~-~~---------~~~~~~d~~~~s~sK~~~~~~g--~g~~~~---~~~~~~~~~~~~~~~ 238 (393)
T 3kgw_A 174 CHRYQCLLLVDSVASLGGVP-IY---------MDQQGIDIMYSSSQKVLNAPPG--ISLISF---NDKAKYKVYSRKTKP 238 (393)
T ss_dssp HHHTTCEEEEECTTTTTTSC-CC---------TTTTTCCEEEEESSSTTCCCSS--CEEEEE---CHHHHHHHHTCSSCC
T ss_pred HHHcCCEEEEECCccccCcc-cc---------hhhcCCCEEEecCcccccCCCc--eeEEEE---CHHHHHHHhccCCCC
Confidence 99999999999997632211 11 11224568889999976 4555 899877 777544433210000
Q ss_pred -------------------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012628 337 -------------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW 397 (459)
Q Consensus 337 -------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 397 (459)
.+....+++..++.++...+.. .. .+.+++.+++++++++++.+.|+ ++| +
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~ 308 (393)
T 3kgw_A 239 VSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL---IA--EQGLENCWRRHREATAHLHKHLQ-EMG----L 308 (393)
T ss_dssp SCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH---HH--HHCHHHHHHHHHHHHHHHHHHHH-HTT----C
T ss_pred CceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHH---HH--HhhHHHHHHHHHHHHHHHHHHHH-HcC----C
Confidence 0011123444444444333321 11 12367889999999999999999 876 4
Q ss_pred ccccCC----cceeeecC----CCH-HHHHHHHhcccEEEcCCC--------cEEE-ccC-ChhhHHHHHHHHHHHHhhc
Q 012628 398 SFILRQ----IGMFSFTG----LNK-AQSDNMTNKWHVYMTKDG--------RISL-AGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 398 ~~~~~~----~g~f~~~~----l~~-~~~~~ll~~~gI~v~~gg--------Ris~-~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
++..+. .++++|+. .+. ++.+.|++++||.+.+|. ||++ +.. +++++++++++|+++++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 309 KFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp CBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred eeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 554332 23444432 344 556677776699999862 9998 533 8899999999999999865
No 121
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=6.2e-29 Score=248.01 Aligned_cols=310 Identities=11% Similarity=0.012 Sum_probs=215.6
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCc-eEEeecccchhHHHHHHHHHHHhCCCC
Q 012628 102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLSGTGSLRLAAALIERYFPGA 178 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~ggt~a~~l~~~~~~~~~~gd 178 (459)
+++.+.+++.+.+. ..|.+ .....++++.+++++... +++ +++ +.||+++++++. ...+.+||
T Consensus 24 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~------~~~~v~~--~~sgt~al~~~~--~~~~~~gd 89 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI----GQYDPAMTHYMNEVMALYRGVFRTE------NRWTMLV--DGTSRAGIEAIL--VSAIRPGD 89 (411)
T ss_dssp CCHHHHHHHTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--ESCHHHHHHHHH--HHHCCTTC
T ss_pred CCHHHHHHhhcccc----ccccHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCCcHHHHHHHH--HHhcCCCC
Confidence 47888888765431 22222 134578888888887543 333 667 889999999984 34478999
Q ss_pred EEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012628 179 KVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 179 ~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~ 256 (459)
+|++++|+|.. +...++..|++++.+|+ +.++.+|++++++++++ .+++++++++||||||.+.+ +++|++
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~ 162 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRAEVHTIEV--PWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQP---LAELGE 162 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHH
T ss_pred EEEEecCCchHHHHHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceecc---HHHHHH
Confidence 99999999977 88889999999999998 45678899999999985 25678888999999999965 778999
Q ss_pred HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHH--
Q 012628 257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQL-- 333 (459)
Q Consensus 257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~-- 333 (459)
+|++||+++|+|+++..... ..+ ....+.++++.|+||. ++++ ++||+++ +++..+.+....
T Consensus 163 l~~~~~~~li~Dea~~~~~~-~~~---------~~~~~~d~~~~s~~K~l~~~~--g~g~~~~---~~~~~~~~~~~~~~ 227 (411)
T 3nnk_A 163 ICRRYDALFYTDATASLGGN-PLE---------TDVWGLDAVSAGMQKCLGGPS--GTSPITL---SARMEEAIRRRKCV 227 (411)
T ss_dssp HHHHHTCEEEEECTTTBTTB-CCC---------TTTTTCSEEECCSTTTTCCCS--SEEEEEE---CHHHHHHHHTTCCC
T ss_pred HHHHcCCEEEEECCcccCCc-ccc---------hhccCCcEEEecCccccCCCC--ceEEEEE---CHHHHHHHhhcccc
Confidence 99999999999999543221 111 1122457889999997 5544 5899877 777544443211
Q ss_pred --------------Hh----------------hccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHH
Q 012628 334 --------------KR----------------LARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQK 382 (459)
Q Consensus 334 --------------~~----------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~ 382 (459)
.. .......+++..++.++...+.. +.+. +++.++++++++++
T Consensus 228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~~~ 301 (411)
T 3nnk_A 228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL------ILQEGLDYGIARHKLHGDA 301 (411)
T ss_dssp CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHH
Confidence 00 00011123344444444333321 1222 67889999999999
Q ss_pred HHHHHhhccCCCCCcccccCCc---ceeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEE-ccC-ChhhH
Q 012628 383 LFDSLSAKDKSGKDWSFILRQI---GMFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISL-AGL-SLAKC 444 (459)
Q Consensus 383 l~~~L~~~~g~~~~~~~~~~~~---g~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~~~-~~e~i 444 (459)
+.+.|+ ++| +++..+.+ +.++++ +.+. ++.+.|++++||.+.+| + ||++ +.. +++++
T Consensus 302 l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i 376 (411)
T 3nnk_A 302 LVKGIQ-AMG----LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCV 376 (411)
T ss_dssp HHHHHH-HTT----CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHH
T ss_pred HHHHHH-HcC----CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHH
Confidence 999999 876 45554443 344443 3344 45667777679999875 2 9998 533 78999
Q ss_pred HHHHHHHHHHHhhc
Q 012628 445 EYLADAIIDSYHNV 458 (459)
Q Consensus 445 ~~~~~~l~~~~~~~ 458 (459)
++++++|+++++++
T Consensus 377 ~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 377 MTTLSALEAVLNYL 390 (411)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998764
No 122
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=2e-28 Score=246.47 Aligned_cols=335 Identities=14% Similarity=0.054 Sum_probs=212.2
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+|+..|.+....++. +|.|.+++.+.++....+.| +.....++++++++++. . +++|++ ++||+
T Consensus 54 g~~ylD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~------~~~v~~--~~sGs 121 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGHA--HPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP-A------LDKVRF--VNSGT 121 (434)
T ss_dssp CCEEEECCGGGTTCSSCBT--CHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT-T------CSEEEE--ESSHH
T ss_pred CCEEEECCCchhccccCCC--CHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC-C------CCEEEE--eCchH
Confidence 3578999998764444543 78999999988866433344 66677889999988853 1 688999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCC-CeeeeeeecCCCCC-------------CCHHHHHHHHHcCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-PWSEYRYYDPKTVG-------------LDFEGMIADIKAAP 227 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~-~v~~v~~~~~~~~~-------------~d~e~l~~~i~~~~ 227 (459)
++++++.++.....++++|++.+|+|..+.......+. .+..+... ...+. .|++++++++++.+
T Consensus 122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 200 (434)
T 3l44_A 122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTP-DSAGVPQSIAQEVITVPFNNVETLKEALDKWG 200 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCB-SSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCC-CcCCCCCcCCCceEecCcccHHHHHHHHHhCC
Confidence 99999976654444789999999999876554433322 11111110 00000 18999999987533
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc
Q 012628 228 GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306 (459)
Q Consensus 228 ~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 306 (459)
++++++++++++|++|.+. +++.+++|.++|++||+++|+||+|.++ ..+ ....... ....++ +.||||.+
T Consensus 201 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g---~~~~~~~-~~~~~d---i~t~sK~~ 272 (434)
T 3l44_A 201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFM---YGGAQDL-LGVTPD---LTALGKVI 272 (434)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSS---SSCHHHH-HTCCCS---EEEEEGGG
T ss_pred CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecc---ccHHHHH-cCCCCC---eeehhhhh
Confidence 3566777666666667655 8888999999999999999999999988 322 1112222 222333 34899999
Q ss_pred ccCCCCcceEEEEeCChhHHHHHHHHHHh---hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012628 307 GLYAERIGAMNVVCSSSDLAARVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL 383 (459)
Q Consensus 307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 383 (459)
+ +|+|+||+++ +++ +.+.+.. .....+.+.+.+++.++...|+...- +...++++++++++
T Consensus 273 ~-~G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~--------~~~~~~~~~~~~~l 336 (434)
T 3l44_A 273 G-GGLPIGAYGG---KKE----IMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ--------EGLYEKLDELGATL 336 (434)
T ss_dssp G-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--------TTHHHHHHHHHHHH
T ss_pred c-CCcCeeeEEE---cHH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHH
Confidence 9 8999999866 777 4443332 11222335666776666554431100 12233344444444
Q ss_pred HHHHhh---ccCCCCCcccccCCcceeeec--C--C---------C----HHHHHHHHhcccEEEcCCC----cEEEccC
Q 012628 384 FDSLSA---KDKSGKDWSFILRQIGMFSFT--G--L---------N----KAQSDNMTNKWHVYMTKDG----RISLAGL 439 (459)
Q Consensus 384 ~~~L~~---~~g~~~~~~~~~~~~g~f~~~--~--l---------~----~~~~~~ll~~~gI~v~~gg----Ris~~~~ 439 (459)
.+.|++ +++. .....+.+.++.|. + . + .++.+.|++ +||.+.+++ |+++..
T Consensus 337 ~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~rl~~~~- 411 (434)
T 3l44_A 337 EKGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSKYEAWFLTTEH- 411 (434)
T ss_dssp HHHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSSTTCCEECCTTC-
T ss_pred HHHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecCCCcEEEeccc-
Confidence 444440 3332 12334444444331 1 1 1 234556666 599999986 666544
Q ss_pred ChhhHHHHHHHHHHHHhhc
Q 012628 440 SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 440 ~~e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++++|+++++++
T Consensus 412 t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 412 TKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 123
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=9.5e-29 Score=247.07 Aligned_cols=310 Identities=11% Similarity=0.011 Sum_probs=213.8
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCC--CcccHHHHHHHHHHHhcCCCCccccCceE-EeecccchhHHHHHHHHHHHhCCCC
Q 012628 102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVA-TVQGLSGTGSLRLAAALIERYFPGA 178 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~-~~~t~ggt~a~~l~~~~~~~~~~gd 178 (459)
+++.+.+++.+.. ...|.+ .....++++.+++++... +++++ + +.|+++++.++. ...+.+||
T Consensus 22 ~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g~~------~~~~~~~--~~s~t~al~~~~--~~l~~~gd 87 (416)
T 3isl_A 22 VDPRVLRVMSTPV----VGQFDPAFTGIMNETMEMLRELFQTK------NRWAYPI--DGTSRAGIEAVL--ASVIEPED 87 (416)
T ss_dssp CCHHHHHHTTSCC----CCTTSHHHHHHHHHHHHHHHHHTTCC------CSEEEEE--ESCHHHHHHHHH--HHHCCTTC
T ss_pred cCHHHHHHhcccC----CCCccHHHHHHHHHHHHHHHHHhCCC------CCcEEEe--cCcHHHHHHHHH--HHhcCCCC
Confidence 4677776665421 123322 334678888888886532 45454 6 888999999984 44478999
Q ss_pred EEEEcCCCCcc--hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012628 179 KVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 179 ~Vlv~~p~y~~--~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~ 256 (459)
+|++++|+|.. +...++..|++++.+|++ .++.+|++++++++++ ++++++++++||||||.+++ +++|.+
T Consensus 88 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~ 160 (416)
T 3isl_A 88 DVLIPIYGRFGYLLTEIAERYGANVHMLECE--WGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIHP---LKAIGE 160 (416)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CHHHHH
T ss_pred EEEEecCCcccHHHHHHHHhcCCeeEEEecC--CCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceecC---HHHHHH
Confidence 99999999987 777888999999999984 4568899999999983 15678888999999999966 778999
Q ss_pred HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHHHH--
Q 012628 257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKSQL-- 333 (459)
Q Consensus 257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~-- 333 (459)
+|++||+++|+|++|...... .+ ....+.++++.|+||. ++++ ++|++++ +++..+.+....
T Consensus 161 l~~~~~~~li~D~a~~~~~~~-~~---------~~~~~~d~~~~s~~K~l~g~~--g~g~~~~---~~~~~~~~~~~~~~ 225 (416)
T 3isl_A 161 ACRTEDALFIVDAVATIGGCE-VK---------VDEWKIDAAIGGTQKCLSVPS--GMAPITY---NERVADVIAARKKV 225 (416)
T ss_dssp HHHHTTCEEEEECTTTTTTSC-CC---------TTTTTCSEEECCSSSTTCCCS--SEEEEEE---CHHHHHHHHTC---
T ss_pred HHHHcCCEEEEECCccccCCC-cc---------hhhcCCCEEEecCccccCCCC--CeEEEEE---CHHHHHHhhccccc
Confidence 999999999999996532211 11 1122457889999997 5544 4899877 777555443110
Q ss_pred -----------------------------H---hhccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHH
Q 012628 334 -----------------------------K---RLARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVR 380 (459)
Q Consensus 334 -----------------------------~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (459)
. ........+++..++.++...+.. +.+. +++.++++++++
T Consensus 226 ~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~ 299 (416)
T 3isl_A 226 ERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRL------VLEEGLETRFERHRHHE 299 (416)
T ss_dssp ---------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHH
Confidence 0 001111223444444444333321 1223 678899999999
Q ss_pred HHHHHHHhhccCCCCCcccccCCc---ceeeec----CCCH-HHHHHHHhcccEEEcCC------C--cEEEcc-CChhh
Q 012628 381 QKLFDSLSAKDKSGKDWSFILRQI---GMFSFT----GLNK-AQSDNMTNKWHVYMTKD------G--RISLAG-LSLAK 443 (459)
Q Consensus 381 ~~l~~~L~~~~g~~~~~~~~~~~~---g~f~~~----~l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~-~~~e~ 443 (459)
+++.+.|+ +.| +++..+.+ +.++++ +.+. ++.+.|++++||.+.+| + ||++.. .++++
T Consensus 300 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e 374 (416)
T 3isl_A 300 AALAAGIK-AMG----LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKE 374 (416)
T ss_dssp HHHHHHHH-HTT----CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHH
T ss_pred HHHHHHHH-HcC----CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHH
Confidence 99999999 776 46555543 334433 3344 45667777669999875 1 999843 25666
Q ss_pred -HHHHHHHHHHHHhhc
Q 012628 444 -CEYLADAIIDSYHNV 458 (459)
Q Consensus 444 -i~~~~~~l~~~~~~~ 458 (459)
+++++++|+++++++
T Consensus 375 ~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 375 NVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 999999999998764
No 124
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.96 E-value=9.4e-28 Score=238.85 Aligned_cols=313 Identities=14% Similarity=0.079 Sum_probs=206.9
Q ss_pred eeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012628 86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (459)
Q Consensus 86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (459)
.++++|.| |....+++.+.+.+++.........+.|. +..+..++++.+++++.. + +.++ +.+|+++
T Consensus 23 ~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a 91 (398)
T 2rfv_A 23 STGALSTP-IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG-------E-AGLA--TASGISA 91 (398)
T ss_dssp TTCCSSCC-CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHH
T ss_pred CCCCcCCC-CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHH
Confidence 46788887 65565666677777766322211124444 567788999999998642 2 4445 5677799
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012628 164 LRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (459)
Q Consensus 164 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~ 239 (459)
++++. ...+.+||+|++++|+|..+...+ +..|++++.+|.. |++++++++++ +++++++++|+
T Consensus 92 ~~~~l--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~---~~~~v~~~~~~ 159 (398)
T 2rfv_A 92 ITTTL--LTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRP---ETKVVYIETPA 159 (398)
T ss_dssp HHHHH--HHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCT---TEEEEEEESSB
T ss_pred HHHHH--HHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCC---CCeEEEEECCC
Confidence 99983 334679999999999999887776 7889999988762 89999999875 78899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNV 318 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~ 318 (459)
||||.+++ +++|+++|++||+++|+||+|..+.+.. .. ..+.++++.|+||.++.+|+|+ ||+++
T Consensus 160 nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~------~~-----~~~~di~~~s~sK~~~~~g~~~~G~~~~ 225 (398)
T 2rfv_A 160 NPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ------PL-----QLGADIVVHSVTKYINGHGDVIGGIIVG 225 (398)
T ss_dssp TTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred CCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC------ch-----hhCCcEEEEeCcccccCCCCceEEEEEE
Confidence 99999975 8889999999999999999988766431 11 1246789999999999899999 99866
Q ss_pred EeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----
Q 012628 319 VCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK----- 392 (459)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g----- 392 (459)
+++.++. .+....... ..+.+.+++.++...|+.. ....++..++.+.+.+.|+ +.+
T Consensus 226 ---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~-~~~~v~~~ 288 (398)
T 2rfv_A 226 ---KQEFIDQ---ARFVGLKDITGGCMSPFNAWLTLRGVKTL----------GIRMERHCENALKIARFLE-GHPSITRV 288 (398)
T ss_dssp ---CHHHHHH---HHHTHHHHTTCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHH-TCTTEEEE
T ss_pred ---CHHHHHH---HHHHHHHhCCCCCCCHHHHHHHHhhhhhH----------HHHHHHHHHHHHHHHHHHH-cCCCeeEE
Confidence 7764441 222222222 2355666777776666542 1222334445555555565 432
Q ss_pred -CC-----CCcccccC----CcceeeecCCC--HHHHHHHHhcc---cEEEcCC--------------------------
Q 012628 393 -SG-----KDWSFILR----QIGMFSFTGLN--KAQSDNMTNKW---HVYMTKD-------------------------- 431 (459)
Q Consensus 393 -~~-----~~~~~~~~----~~g~f~~~~l~--~~~~~~ll~~~---gI~v~~g-------------------------- 431 (459)
.+ +++.+..+ .++++.| .+. .+....++++. ||.+.+|
T Consensus 289 ~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g 367 (398)
T 2rfv_A 289 YYPGLSSHPQYELGQRQMSLPGGIISF-EIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367 (398)
T ss_dssp ECTTSTTSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTT
T ss_pred ECCCCCCCccHHHHHhhCCCCceEEEE-EEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcC
Confidence 00 01333332 4566655 443 23455555543 6665443
Q ss_pred ---C--cEEEccC-ChhhHHHHHHHHHH
Q 012628 432 ---G--RISLAGL-SLAKCEYLADAIID 453 (459)
Q Consensus 432 ---g--Ris~~~~-~~e~i~~~~~~l~~ 453 (459)
+ |||++.. ++++++.++++|++
T Consensus 368 ~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 368 ITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp CCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 2 9998864 45566666666654
No 125
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=1.2e-28 Score=240.49 Aligned_cols=309 Identities=12% Similarity=0.006 Sum_probs=213.7
Q ss_pred CcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012628 102 VLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V 180 (459)
+++.+.+++.+.+.. +.|. ...+..++|+++++++... .+++++++ |+||+++++++.+ .+.. |+|
T Consensus 11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~----~~~~~v~~--t~g~t~a~~~~~~---~~~~-d~v 77 (353)
T 2yrr_A 11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDPG----EGALVAAL--AGSGSLGMEAGLA---NLDR-GPV 77 (353)
T ss_dssp CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCCC----TTCEEEEE--SSCHHHHHHHHHH---TCSC-CCE
T ss_pred CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCCC----CCCceEEE--cCCcHHHHHHHHH---HhcC-CcE
Confidence 478899888776643 2232 2356889999999997432 23578988 9999999999732 2334 899
Q ss_pred EEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012628 181 LISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258 (459)
Q Consensus 181 lv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~ 258 (459)
++++|+|+.+ ...++..|++++.+|++ .++.+|++.+++.+++. +++++++++|+||||.+++ +++|.++|
T Consensus 78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~l~ 150 (353)
T 2yrr_A 78 LVLVNGAFSQRVAEMAALHGLDPEVLDFP--PGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP---AEAIGALA 150 (353)
T ss_dssp EEEECSHHHHHHHHHHHHTTCCEEEEECC--TTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EEEcCCCchHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC---HHHHHHHH
Confidence 9999998875 45567889999999984 35679999999999852 4567788999999999976 66899999
Q ss_pred HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHHHHHH------
Q 012628 259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARVKS------ 331 (459)
Q Consensus 259 ~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~------ 331 (459)
++||+++|+|++|. ++... . .+..+ +.++++.|++|. ++++| +||+++ +++..+.+..
T Consensus 151 ~~~~~~li~D~a~~-~~~~~--~---~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~l~~~~~~~~ 215 (353)
T 2yrr_A 151 KEAGALFFLDAVTT-LGMLP--F---SMRAM----GVDYAFTGSQKCLSAPPG--LAPIAA---SLEARKAFTGKRGWYL 215 (353)
T ss_dssp HHHTCEEEEECTTT-TTTSC--C---CHHHH----TCSEEECCTTSTTCCCSS--CEEEEE---CHHHHHHCCCCSCSTT
T ss_pred HHcCCeEEEEcCcc-ccccc--c---ccccc----CceEEEecCcccccCCCc--eEEEEE---CHHHHHHhccCCCccc
Confidence 99999999999984 33211 1 12221 235788899995 56566 799976 7775544320
Q ss_pred ---HH-Hhh-ccccccCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC--
Q 012628 332 ---QL-KRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-- 403 (459)
Q Consensus 332 ---~~-~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-- 403 (459)
.. ... ......+++..++.++...++. +.+. +++++++++++++++.+.|+ ++| +++..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~ 284 (353)
T 2yrr_A 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL------VLEEGVAARERRAREVYAWVLEELK-ARG----FRPYPKASP 284 (353)
T ss_dssp CHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSSB
T ss_pred cHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HCC----CccccCccC
Confidence 00 000 1111224555555544443321 1222 67888999999999999999 776 4555443
Q ss_pred cceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEc-cCChhhHH-HHHHHHHHHHhh
Q 012628 404 IGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLA-GLSLAKCE-YLADAIIDSYHN 457 (459)
Q Consensus 404 ~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~-~~~~e~i~-~~~~~l~~~~~~ 457 (459)
+++++|+. .+. ++.+.|.+ +||.+.+| + ||++. ..++++++ +++++|+++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 285 LPTVLVVRPPEGVDADRLVRALYA-EGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp CTTEEEEECCTTCCHHHHHHHHHH-TTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-CCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 45554443 344 44556666 59999875 2 99984 34889999 999999998864
No 126
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.96 E-value=4.3e-28 Score=243.72 Aligned_cols=338 Identities=9% Similarity=-0.002 Sum_probs=219.9
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC---CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
...+|++.+.+....++ .+|.|.+++.+.++.... ..| +.....++++.+++++.. .+++|++ |+|
T Consensus 43 ~~ylD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~g 111 (429)
T 1s0a_A 43 RRLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFGGI-THAPAIELCRKLVAMTPQ------PLECVFL--ADS 111 (429)
T ss_dssp CEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHHCSCCCCSSE-ECHHHHHHHHHHHHHSCT------TCCEEEE--ESS
T ss_pred CEEEEcCccHhhccCCC--CCHHHHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHhCCC------CCCEEEE--eCC
Confidence 45789888875333333 378999999988864321 133 233456788888887532 3789999 999
Q ss_pred chhHHHHHHHHHHHh-C----CCCEEEEcCCCCcchHHHhh-hCC-------------CCeeeeeeec---CCCC-CCCH
Q 012628 160 GTGSLRLAAALIERY-F----PGAKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRYYD---PKTV-GLDF 216 (459)
Q Consensus 160 gt~a~~l~~~~~~~~-~----~gd~Vlv~~p~y~~~~~~~~-~~G-------------~~v~~v~~~~---~~~~-~~d~ 216 (459)
|+++++++.+++..+ . |||+|++++|+|..+..... ..| ..+..++... +..+ .+|+
T Consensus 112 gtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 191 (429)
T 1s0a_A 112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH
Confidence 999999986654322 2 58999999999987643222 211 1344555421 1123 5899
Q ss_pred HHHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012628 217 EGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294 (459)
Q Consensus 217 e~l~~~i~~~~~~~~~ii~~~p-~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (459)
+.+++++++.++++++++++.+ |||||. .++++++++|+++|++||+++|+||+|.+++..+. ...+. ......
T Consensus 192 ~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~-~~~~~~ 267 (429)
T 1s0a_A 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACE-HAEIAP 267 (429)
T ss_dssp HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG-GGTCCC
T ss_pred HHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhh-hcCCCC
Confidence 9999999742235666665555 799996 56788899999999999999999999988864321 11111 112233
Q ss_pred eEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh-----ccccccCCchHHHHHHHHHhCChhhHHHHHHH
Q 012628 295 ELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL-----ARPMYSNPPVHGARIVANVVGNPALFDEWKAE 368 (459)
Q Consensus 295 ~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 368 (459)
+++ ||||.++ +| +|+||+++ +++.++. +... ....+.+.+.+++.++...|+.. .+
T Consensus 268 d~~---t~sK~l~-~G~~~iG~~~~---~~~~~~~----l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~------~~- 329 (429)
T 1s0a_A 268 DIL---CLGKALT-GGTMTLSATLT---TREVAET----ISNGEAGCFMHGPTFMGNPLACAAANASLAIL------ES- 329 (429)
T ss_dssp SEE---EECGGGG-TSSSCCEEEEE---CHHHHHH----HHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH------HT-
T ss_pred CEE---Eeccccc-CCCccceEEEe---CHHHHHH----hhcCCCcccccCCCCCCCHHHHHHHHHHHHHH------Hh-
Confidence 433 7999999 68 99999976 7774433 3331 11223355677776665554311 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC---cEEEcc-
Q 012628 369 MEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG---RISLAG- 438 (459)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg---Ris~~~- 438 (459)
+...++++++++++.+.|+ +++ .|. +..+.+. |.|+|+.+ +. ++.+.|++ +||.+.+.+ ||+++.
T Consensus 330 -~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~iRis~~~~ 404 (429)
T 1s0a_A 330 -GDWQQQVADIEVQLREQLA-PARDAEM-VADVRVL-GAIGVVETTHPVNMAALQKFFVE-QGVWIRPFGKLIYLMPPYI 404 (429)
T ss_dssp -CHHHHHHHHHHHHHHHHHG-GGGGCTT-EEEEEEE-TTEEEEEESSCBCHHHHHHHHHH-TTEECCCBTTEEEECCCTT
T ss_pred -CCHHHHHHHHHHHHHHHHH-HHhcCCC-EEEEEEe-eEEEEEEECCcccHHHHHHHHHH-CCCEEeccCCEEEEECCCC
Confidence 2345677778888999888 752 221 3334444 44666533 33 45666665 699999865 888542
Q ss_pred CChhhHHHHHHHHHHHHhhc
Q 012628 439 LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 439 ~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+++++++++++|+++++++
T Consensus 405 ~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 405 ILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CCHHHHHHHHHHHHHHTSSG
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 38999999999999988754
No 127
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.96 E-value=1.2e-28 Score=248.46 Aligned_cols=339 Identities=11% Similarity=-0.037 Sum_probs=215.0
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+||+.|.+....++ .+|.+.+++.+.+... ..|....|..++++++++++....+... ++++++ |+||+
T Consensus 42 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~--~~ggs 114 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGY--GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPGEG-THKIWF--GHSGS 114 (439)
T ss_dssp SCEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTCTT-TEEEEE--ESSHH
T ss_pred CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCCCC-CCEEEE--eCCHH
Confidence 356899999987444444 3789999999888653 3454455566666777766655543221 168999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-CCC--------------eeeeeeecCCCCCC-----CHHHHHH
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RVP--------------WSEYRYYDPKTVGL-----DFEGMIA 221 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G~~--------------v~~v~~~~~~~~~~-----d~e~l~~ 221 (459)
++++.+.+++..+.++++|++.+|+|..+....... |.. +..+|.. ..+.. |+++|++
T Consensus 115 ea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~ 192 (439)
T 3dxv_A 115 DANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLTE 192 (439)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHHH
Confidence 999999665444557789999999997654433333 322 1233331 11111 6899999
Q ss_pred HHH-cCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012628 222 DIK-AAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (459)
Q Consensus 222 ~i~-~~~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (459)
+++ ..+++++++++++++|++|.+.+ ++.+++|.++|++||+++|+||+|.+++..+. ..... ..+..++++
T Consensus 193 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~-~~~~~~di~-- 266 (439)
T 3dxv_A 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFE-HEGFVPDIL-- 266 (439)
T ss_dssp HHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGG-GTTCCCSEE--
T ss_pred HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHH-hcCCCCCEE--
Confidence 994 22346778888888888888654 45599999999999999999999998764321 11111 112223433
Q ss_pred EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 379 (459)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 379 (459)
||||.++ +|+|+||+++ +++ +++.+.......+. .+.+++.++...|+... + +...++++++
T Consensus 267 -s~sK~~~-~G~riG~~~~---~~~----~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~~~~~~~~~ 328 (439)
T 3dxv_A 267 -VLGKGLG-GGLPLSAVIA---PAE----ILDCASAFAMQTLH-GNPISAAAGLAVLETID------R--DDLPAMAERK 328 (439)
T ss_dssp -EECGGGG-TTSCCEEEEE---EHH----HHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TTHHHHHHHH
T ss_pred -EEcchhc-CCcceEEEEE---CHH----HHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cCHHHHHHHH
Confidence 9999999 6999999976 777 44443332222333 56666666655543210 0 2334445555
Q ss_pred HHHHHHHHhh---ccCCCCCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCCC------cEEEc
Q 012628 380 RQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG------RISLA 437 (459)
Q Consensus 380 ~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg------Ris~~ 437 (459)
++++.+.|++ +++. +....+.|. |+|+.+ ..++.+.++++ ||.+.++| ||+++
T Consensus 329 ~~~~~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~iRi~~~ 403 (439)
T 3dxv_A 329 GRLLRDGLSELAKRHPL---IGDIRGRGL-ACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMNGNVLEFTPP 403 (439)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTTSCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCC---eEEEEEEEE-EEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCCCCEEEEECC
Confidence 5555555540 2321 233444444 444422 12446677764 99998875 77654
Q ss_pred cC-ChhhHHHHHHHHHHHHhhc
Q 012628 438 GL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 ~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
.. +++++++++++|+++++++
T Consensus 404 ~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 404 LTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 33 8999999999999998765
No 128
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.96 E-value=7e-28 Score=244.77 Aligned_cols=342 Identities=12% Similarity=0.093 Sum_probs=223.7
Q ss_pred CCCceeecccc-cCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 82 DEKKLNLGVGA-YRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~-~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+.++++|+.|. |+|.....+ .+.+.+++.+.+..+. ..|.+..+..+||+++++++.. +++++ |+||
T Consensus 33 g~~~~~~~~g~~ylD~~~~~~-~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~gg 100 (467)
T 1ax4_A 33 GYNPFLLPSSAVYIDLLTDSG-TNAMSDHQWAAMITGD-EAYAGSRNYYDLKDKAKELFNY--------DYIIP--AHQG 100 (467)
T ss_dssp TSCGGGSCGGGCSEECSCSSS-CCCEEHHHHHHHHTCC-CCSSSCHHHHHHHHHHHHHHCC--------CEEEE--ESSH
T ss_pred CcCcccCCCCceeeecccCcC-CHHHHHHHHHHHhhcc-cccccCccHHHHHHHHHHHcCC--------CcEEE--cCCc
Confidence 45677888775 334322222 2667777777665443 5788888999999999999742 57888 9999
Q ss_pred hhHHHHHHHHHHHhC----CCCE---EEEcCCCCcchHHHhhhCCCCeeeeeeec---C-----CCCCCCHHHHHHHHHc
Q 012628 161 TGSLRLAAALIERYF----PGAK---VLISSPTWGNHKNIFNDARVPWSEYRYYD---P-----KTVGLDFEGMIADIKA 225 (459)
Q Consensus 161 t~a~~l~~~~~~~~~----~gd~---Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~---~-----~~~~~d~e~l~~~i~~ 225 (459)
++|++++.+.+ +. +||+ |+++.+.|..+...+...|++++.++... . .++.+|+++|++++++
T Consensus 101 t~A~~~al~~~--~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~ 178 (467)
T 1ax4_A 101 RGAENILFPVL--LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ 178 (467)
T ss_dssp HHHHHHHHHHH--HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHh
Confidence 99999985544 55 8998 99997777888888888999888776531 1 1457899999999985
Q ss_pred CC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC---C-------CCCCCCCChhHHHHHHhcC
Q 012628 226 AP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG---F-------ASGSLDNDASSVRLFATRG 293 (459)
Q Consensus 226 ~~-~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~---~-------~~~~~~~~~~~~~~~~~~~ 293 (459)
.. ++++++++++||||| |.+++.+++++|+++|++||+++|+|+++.. + .+.+. +...+..-....
T Consensus 179 ~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 256 (467)
T 1ax4_A 179 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA--TIKEVIFDMYKY 256 (467)
T ss_dssp HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC--CHHHHHHHHGGG
T ss_pred cCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC--chhhhhhhhccc
Confidence 21 257889999999999 8999999999999999999999999998432 0 22211 111111000011
Q ss_pred CeEEEEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHHHHHHhhcc-ccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012628 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 371 (459)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 371 (459)
.+ +++.|+||.+|++ +|+++ +..++ ++++.+......... ..+...+...+.++...|... . + ++
T Consensus 257 ~d-~~~~s~sK~~g~~---~Gg~~-~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~-----~--~~ 323 (467)
T 1ax4_A 257 AD-ALTMSAKKDPLLN---IGGLV-AIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-T-----E--EE 323 (467)
T ss_dssp CS-EEEEETTSTTCCS---SCEEE-EESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT-T-----C--HH
T ss_pred cc-eEEEeccccCCCC---cceEE-EeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHh-h-----h--hh
Confidence 22 4668999999865 44432 23336 755555433221110 112222332222222122110 0 0 01
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecC-------CC------HHHHHHHHhcccEEEcC--------
Q 012628 372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-------LN------KAQSDNMTNKWHVYMTK-------- 430 (459)
Q Consensus 372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~-------l~------~~~~~~ll~~~gI~v~~-------- 430 (459)
..++..++++++.+.|+ +.+ +.+..+.+|+++|++ +. .+++++|++++||.+.+
T Consensus 324 ~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~ 398 (467)
T 1ax4_A 324 YLHYRIGQVKYLGDRLR-EAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR 398 (467)
T ss_dssp HHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB
T ss_pred HHHHHHHHHHHHHHHHH-hCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccc
Confidence 22223356778888888 654 566677888888876 32 24466674667999876
Q ss_pred ----C-------C--cEEEcc--CChhhHHHHHHHHHHHHhh
Q 012628 431 ----D-------G--RISLAG--LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 431 ----g-------g--Ris~~~--~~~e~i~~~~~~l~~~~~~ 457 (459)
| + ||+++. .+++++++++++|++++++
T Consensus 399 ~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 399 DPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp CTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 2 3 899872 4899999999999988765
No 129
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.96 E-value=1.6e-27 Score=239.47 Aligned_cols=335 Identities=16% Similarity=0.066 Sum_probs=219.9
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+|++.|.+....++ .+|.|.+++.+.++....+ +.+.....+|++++++++.. +++|++ ++||+
T Consensus 52 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~~--~~~Gs 119 (429)
T 3k28_A 52 GNEYIDYVLSWGPLIHGH--ANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVPS-------IEIVRM--VNSGT 119 (429)
T ss_dssp CCEEEESCGGGTTCTTCB--SCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred CCEEEECCCChhhcccCC--CCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eCChH
Confidence 457899999986444454 3799999999888664323 44677888999999998531 578999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCCCCeeeeeeecCCCCC------------CCHHHHHHHHHcCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVG------------LDFEGMIADIKAAPG 228 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G~~v~~v~~~~~~~~~------------~d~e~l~~~i~~~~~ 228 (459)
++++.+.++.....++++|++.+|+|..+..... ..|..+..++........ -|++++++.+++.++
T Consensus 120 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 3k28_A 120 EATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD 199 (429)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 9999997665444477899999999976544333 233322222221011110 189999999875333
Q ss_pred CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012628 229 GSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (459)
+++++++.+++|++|.+. +++.+++|.++|++||+++|+||+|.++ ..+ ..... ...+..+++ .+|||.++
T Consensus 200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~-~~~~~~~di---~t~sK~~~ 271 (429)
T 3k28_A 200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQ-GYYGVTPDL---TCLGKVIG 271 (429)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHH-HHHTCCCSE---EEECGGGG
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHH-HHhCCCCce---ehhhhhhc
Confidence 566666665666666554 6788999999999999999999999888 432 12222 222333333 47999998
Q ss_pred cCCCCcceEEEEeCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 308 LYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF 384 (459)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 384 (459)
.|+|+||+++ +++ +++.+... ....+.+.+.+++.++...|+..+ ++..++++++++++.
T Consensus 272 -~G~~iG~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~~~~~~~l~ 334 (429)
T 3k28_A 272 -GGLPVGAYGG---KAE----IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEFERKAEMLE 334 (429)
T ss_dssp -TTSCCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEE---cHH----HHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 5999999876 777 44333221 112233667777777776665432 244556666666666
Q ss_pred HHHhhcc----CCCCCcccccCCcceeeec--CC-----------C----HHHHHHHHhcccEEEcCCC----cEEEccC
Q 012628 385 DSLSAKD----KSGKDWSFILRQIGMFSFT--GL-----------N----KAQSDNMTNKWHVYMTKDG----RISLAGL 439 (459)
Q Consensus 385 ~~L~~~~----g~~~~~~~~~~~~g~f~~~--~l-----------~----~~~~~~ll~~~gI~v~~gg----Ris~~~~ 439 (459)
+.|+ ++ +. +..+.+.|.++.|. +. + .++.+.|++ +||.+.|+| |+++..
T Consensus 335 ~~L~-~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~r~~~~~- 408 (429)
T 3k28_A 335 AGLR-KAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQFEGLFLSTVH- 408 (429)
T ss_dssp HHHH-HHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSCBCCCTTC-
T ss_pred HHHH-HHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCCCCCEEEECCC-
Confidence 6665 43 32 22344455544432 10 1 344566666 599999975 887655
Q ss_pred ChhhHHHHHHHHHHHHhhcC
Q 012628 440 SLAKCEYLADAIIDSYHNVS 459 (459)
Q Consensus 440 ~~e~i~~~~~~l~~~~~~~~ 459 (459)
+++++++++++|++++++++
T Consensus 409 t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 409 SDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998763
No 130
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.96 E-value=3.9e-28 Score=239.50 Aligned_cols=315 Identities=14% Similarity=0.049 Sum_probs=201.5
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (459)
+++|++.|.+ . +++++.+.+++.. . ..| ..-..++++.+++++.. . +++++++ ++||+++
T Consensus 29 ~v~~~~~~~~----~-~~~~~~v~~a~~~-----~-~~~--~~~~~~~~~~~a~~~g~----~-~~~~~~~--~~ggt~a 88 (374)
T 2aeu_A 29 ALYDLSGLSG----G-FLIDEKDKALLNT-----Y-IGS--SYFAEKVNEYGLKHLGG----D-ENDKCVG--FNRTSSA 88 (374)
T ss_dssp GCEECSSCCC----C-CCCCHHHHHHHTS-----T-THH--HHHHHHHHHHHHHHHTC----C-TTEEEEE--ESSHHHH
T ss_pred ceeeecccCC----C-CCCCHHHHHHHHH-----h-cCc--hHHHHHHHHHHHHHhCC----C-CcceEEE--EcChHHH
Confidence 6889998875 2 3458889888851 1 111 11112344444444322 1 2467888 9999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE-EEeCCCC
Q 012628 164 LRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI-LLHGCAH 239 (459)
Q Consensus 164 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~-ii~~~p~ 239 (459)
+.++.. .+ +||+|++++|+|+.+.. .++..|++++.+ .|+++++++ + +++++ +++++||
T Consensus 89 ~~~~~~---~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~---~~~~~~v~~~~p~ 151 (374)
T 2aeu_A 89 ILATIL---AL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I---DKDTLVIITGSTM 151 (374)
T ss_dssp HHHHHH---HH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C---CTTEEEEEECBCT
T ss_pred HHHHHH---hC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C---CCccEEEEEccCC
Confidence 999843 34 99999999998876544 667789988877 278888877 3 36788 8889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
||||. +.+++++|.++|++||+++|+||+|..+..+.. ...... .. ..+++++|+||.+ +|+|+||+++
T Consensus 152 nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~----~~-~~di~~~S~sK~l--~g~~~G~~~~- 220 (374)
T 2aeu_A 152 DLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPAL----KL-GADLVVTSTDKLM--EGPRGGLLAG- 220 (374)
T ss_dssp TSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHH----HH-TCSEEEEETTSSS--SSCSCEEEEE-
T ss_pred CCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcc----cc-CCcEEEecCcccc--cCcceEEEEE-
Confidence 99997 669999999999999999999999876631000 000011 11 2468889999985 5789999866
Q ss_pred eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCCC
Q 012628 320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV----RQKLFDSLSAKDKSGK 395 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~g~~~ 395 (459)
+++.++.+.... .....+++.+.+.++...|..... +.+++..+..+.. ++.+.+.|. .+.-..
T Consensus 221 --~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~ 288 (374)
T 2aeu_A 221 --KKELVDKIYIEG----TKFGLEAQPPLLAGIYRALKNFNL-----ERIRKAFERAKNFDLSKIEKLNKELK-AIDDNI 288 (374)
T ss_dssp --EHHHHHHHHHHH----HTTTCBCCHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHT-TTCTTE
T ss_pred --CHHHHHHHHHhh----ccccCCCCHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhcc
Confidence 777555554332 222224566666666655543211 0112222222222 556666665 431000
Q ss_pred Ccccc-cCCcceeeecCCCH--H------HHHHHHhcccEEEcCCC---------cEEEccCC--hhhHHHHHHHHHHHH
Q 012628 396 DWSFI-LRQIGMFSFTGLNK--A------QSDNMTNKWHVYMTKDG---------RISLAGLS--LAKCEYLADAIIDSY 455 (459)
Q Consensus 396 ~~~~~-~~~~g~f~~~~l~~--~------~~~~ll~~~gI~v~~gg---------Ris~~~~~--~e~i~~~~~~l~~~~ 455 (459)
++.+. .+.+.+|.|..... + ++.++++++||.+.||. ||+++..+ +++++++.++|++++
T Consensus 289 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l 368 (374)
T 2aeu_A 289 NIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESI 368 (374)
T ss_dssp EEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred CcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence 13443 45555556654432 1 55677777899998861 99987532 334899999999988
Q ss_pred hhc
Q 012628 456 HNV 458 (459)
Q Consensus 456 ~~~ 458 (459)
+++
T Consensus 369 ~~~ 371 (374)
T 2aeu_A 369 KMA 371 (374)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 131
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.96 E-value=1.2e-29 Score=252.44 Aligned_cols=316 Identities=12% Similarity=0.049 Sum_probs=194.2
Q ss_pred ccCcHHHHHHHHHHhhcC---CCCCCC----CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHH
Q 012628 100 PYVLDVVKKAENLMLERG---ENKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE 172 (459)
Q Consensus 100 ~~~~~~v~~a~~~~~~~~---~~~~Y~----~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~ 172 (459)
.++++.+.+++.+.+... ....|. ......++++.+++++.. ++++|++ |+|++++++++.+.+.
T Consensus 30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~------~~~~v~~--~~g~t~al~~~~~~l~ 101 (400)
T 3vax_A 30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSA------EPDELIF--TSGATESNNIALLGLA 101 (400)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTC------CGGGEEE--ESCHHHHHHHHHHTTH
T ss_pred CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCC------CCCcEEE--eCCHHHHHHHHHHHHH
Confidence 345899999998877531 001121 123457788888888643 2678999 9999999999844331
Q ss_pred H--hCCCC-EEEEcCCCCcchHHHhh---hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012628 173 R--YFPGA-KVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246 (459)
Q Consensus 173 ~--~~~gd-~Vlv~~p~y~~~~~~~~---~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~ 246 (459)
. ..+|| +|+++.++|+.+...+. ..|++++.+|++ .++.+|++++++++++ +++++++++||||||.++
T Consensus 102 ~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~ 176 (400)
T 3vax_A 102 PYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSGRISVEGVMERLRP---DTLLVSLMHVNNETGVIQ 176 (400)
T ss_dssp HHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTCCCCHHHHHTTCCT---TEEEEECCSBCTTTCBBC
T ss_pred HhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCCCcCHHHHHHhcCC---CceEEEEECCCCCceeeC
Confidence 1 16899 99999999988766554 469999999984 4678999999999875 788999999999999996
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHH
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA 326 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~ 326 (459)
+ +++|.++|++||+++|+|++|..... ... .... .++++.|+||.+|++| +|++++ +.+++..
T Consensus 177 ~---l~~i~~la~~~~~~li~D~a~~~~~~------~~~----~~~~-~d~~~~s~~K~~g~~g--~g~~~~-~~~~~~~ 239 (400)
T 3vax_A 177 P---VAELAQQLRATPTYLHVDAAQGYGKV------PGD----LTTP-IDMISISGHKIGAPKG--VGALVT-RRREEMD 239 (400)
T ss_dssp C---HHHHHHHHTTSSCEEEEECTTTTTTS------GGG----GGSC-CSEEEEETGGGTSCSS--CEEEEE-CBCSSST
T ss_pred c---HHHHHHHHHhcCCEEEEEhhhhcCCC------CcC----hhhc-CcEEEEeHHHhCCCCc--eEEEEE-ecchhcc
Confidence 6 67899999999999999999763221 111 1222 5688999999888666 677740 2331100
Q ss_pred ---HHHHHHHH---hhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 012628 327 ---ARVKSQLK---RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 400 (459)
Q Consensus 327 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 400 (459)
..+...+. .........++..++.++...++ + +.+.+++++++++++++++.+.|+ ..| +.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~ 308 (400)
T 3vax_A 240 DERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAK---I---FEAEHAQWQVAAQDLRSRLLAGLA-STS----FQVN 308 (400)
T ss_dssp TCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH---H---HHHSHHHHHHHHHHHHHHHHHHHT-TTT----CEEC
T ss_pred ccccccCceecCCCceeeeecCCCCHHHHHHHHHHHH---H---HHhhHHHHHHHHHHHHHHHHHhhC-CCC----EEEe
Confidence 00111110 00011122344444444433332 1 123467888999999999999997 544 4655
Q ss_pred cCCc----ceeee--cCCCHHHHHHHHhcccEEEcCC-------------------------C--cEEE-ccC-ChhhHH
Q 012628 401 LRQI----GMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISL-AGL-SLAKCE 445 (459)
Q Consensus 401 ~~~~----g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~-~~~-~~e~i~ 445 (459)
.+.+ +++.+ .+.+.+.+...+. +||.+.+| + ||++ +.. ++++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~ 387 (400)
T 3vax_A 309 GDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVE 387 (400)
T ss_dssp SCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------
T ss_pred CCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHH
Confidence 5543 23322 2445555444444 69988874 4 9999 543 789999
Q ss_pred HHHHHHHHHHhh
Q 012628 446 YLADAIIDSYHN 457 (459)
Q Consensus 446 ~~~~~l~~~~~~ 457 (459)
+++++|++++++
T Consensus 388 ~~~~~l~~~~~~ 399 (400)
T 3vax_A 388 ELARGVAKLKPS 399 (400)
T ss_dssp ------------
T ss_pred HHHHHHHHHhcc
Confidence 999999998764
No 132
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.96 E-value=5.3e-28 Score=242.88 Aligned_cols=329 Identities=12% Similarity=0.019 Sum_probs=209.8
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+|++.|.+....++ .+|.|.+++.+.++....+.| +.....++++.+++++. .+++|++ ++||+
T Consensus 51 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-------~~~~v~~--~~ggs 118 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP-------SIEMVRF--VNSGT 118 (427)
T ss_dssp SCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-------TCSEEEE--ESSHH
T ss_pred CCEEEECCCchhhhccCC--CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHH
Confidence 357899999986444454 379999999998865432334 44444556666665532 2688999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-CCC-------------------eeeeeeecCCCCCCCHHHHHH
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RVP-------------------WSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G~~-------------------v~~v~~~~~~~~~~d~e~l~~ 221 (459)
++++++.++...+..+++|++.+|+|..+....... |.. +..+|. -|++++++
T Consensus 119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~ 191 (427)
T 3fq8_A 119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKA 191 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHH
Confidence 999999766555556689999999997654433322 211 122221 18999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012628 222 DIKAAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~p~NPTG~~~s-~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (459)
.+++.++++++++++.++|++|.+.+ ++.+++|.++|++||+++|+||+|.++ ..+ ...... .....++ +.
T Consensus 192 ~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~-~~~~~~d---i~ 263 (427)
T 3fq8_A 192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQE-KFGVTPD---LT 263 (427)
T ss_dssp HHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHHH-HTTCCCS---EE
T ss_pred HHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhhH-hcCCCCC---hh
Confidence 99875556778887878888887665 555999999999999999999999988 322 112221 1222233 35
Q ss_pred cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012628 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 377 (459)
||||.++ +|+|+||+++ +++ +.+.+... ....+.+.+.+++.++...|+...- +...++++
T Consensus 264 t~sK~~~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--------~~~~~~~~ 327 (427)
T 3fq8_A 264 TLGKIIG-GGLPVGAYGG---KRE----IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ--------PGTYEYLD 327 (427)
T ss_dssp EECGGGG-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--------TTHHHHHH
T ss_pred hhhhhhh-CCcceEEEEE---cHH----HHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh--------cCHHHHHH
Confidence 8999999 8999999866 887 43333321 1122224566666666554431100 12233344
Q ss_pred HHHHHHHHHHhh---ccCCCCCcccccCCcceeeecCC-----C-------------HHHHHHHHhcccEEEcCCC--cE
Q 012628 378 NVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL-----N-------------KAQSDNMTNKWHVYMTKDG--RI 434 (459)
Q Consensus 378 ~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l-----~-------------~~~~~~ll~~~gI~v~~gg--Ri 434 (459)
++++++.+.|++ +++. ....+..|+++|+.+ . .++.+.|++ +||.+.+++ |+
T Consensus 328 ~~~~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~r~ 402 (427)
T 3fq8_A 328 QITKRLSDGLLAIAQETGH----AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQFEAG 402 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHHhCCC----CeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCCCCE
Confidence 444444444430 3332 222233355554422 1 244556666 599999987 77
Q ss_pred EEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 435 SLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 435 s~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
++... +++++++++++|+++++++
T Consensus 403 ~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 403 FTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 76543 8999999999999998764
No 133
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=8.5e-28 Score=236.98 Aligned_cols=322 Identities=15% Similarity=0.106 Sum_probs=212.9
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
...+|+.|. .++++.+.+++.+.+.. .|.+. .-..++++.+++++.. +.+.+.+++ |+||+
T Consensus 19 ~~~~~~pgp-------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~g~----~~~~~~i~~--~~ggt 81 (376)
T 3f0h_A 19 GMLNFTVGP-------VMSSEEVRAIGAEQVPY----FRTTEFSSTMLENEKFMLEYAKA----PEGSKAVFM--TCSST 81 (376)
T ss_dssp SCEECSSSS-------CCCCHHHHHHHTSCCCC----CSSHHHHHHHHHHHHHHHHHHTC----CTTCEEEEE--SSCHH
T ss_pred CceeecCCC-------CCCcHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHhCC----CCCceEEEE--cCChh
Confidence 345666542 23488898888764421 22221 2334566666666533 211244556 88999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~ 239 (459)
++++++. ...+.+||+|++++|+|..+. ..+...|++++.+|. +.++.+|++++++.+++ +++++++++||
T Consensus 82 ~al~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~~---~~~~v~~~~~~ 154 (376)
T 3f0h_A 82 GSMEAVV--MNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL--EHGKKLTKEKLYEYDNQ---NFTGLLVNVDE 154 (376)
T ss_dssp HHHHHHH--HHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC--CTTCCCCHHHHHTTTTS---CCCEEEEESEE
T ss_pred HHHHHHH--HhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHHHhhcc---CceEEEEeccc
Confidence 9999984 444679999999999776654 346778999999998 44678999999987754 67888889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNV 318 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~ 318 (459)
||||.+++ +++|+++|++||+++|+|++|...... . .+ ...+.++++.|+||.++ ++| +|++++
T Consensus 155 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~---~---~~----~~~~~d~~~~s~~K~l~~~~G--~g~~~~ 219 (376)
T 3f0h_A 155 TSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP---F---NM----NECGADVMITGSQKVLACPPG--ISVIVL 219 (376)
T ss_dssp TTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CH----HHHTCSEEEEETTTTTCCCSS--CEEEEE
T ss_pred CCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc---c---cc----cccCccEEEecCcccccCCCc--eEEEEE
Confidence 99999987 888999999999999999997655421 1 11 11134688899999998 666 677766
Q ss_pred EeCChhHHHHHHHH------------HHhhc-cccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 012628 319 VCSSSDLAARVKSQ------------LKRLA-RPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLF 384 (459)
Q Consensus 319 v~~~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 384 (459)
+++..+.+... ..... ......++..++.++...+. +.. .. .+++++++++++++++.
T Consensus 220 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~--~~~~~~~~~~~~~~~~~~l~ 291 (376)
T 3f0h_A 220 ---APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK---EIK--KHGGADAEVARIASQAADFR 291 (376)
T ss_dssp ---CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHH---HHH--HhcCHHHHHHHHHHHHHHHH
Confidence 77754444320 00000 01111333322222222221 110 11 36788899999999999
Q ss_pred HHHhhccCCCCCcccccCC--cceeeec--CCCH-HHHHHHHhcccEEEcCCC--------cEEEcc-CChhhHHHHHHH
Q 012628 385 DSLSAKDKSGKDWSFILRQ--IGMFSFT--GLNK-AQSDNMTNKWHVYMTKDG--------RISLAG-LSLAKCEYLADA 450 (459)
Q Consensus 385 ~~L~~~~g~~~~~~~~~~~--~g~f~~~--~l~~-~~~~~ll~~~gI~v~~gg--------Ris~~~-~~~e~i~~~~~~ 450 (459)
+.|+ ++| +++..+. .+++.+. +.+. ++.+.|.+++||.+.+|. ||++.. .+++++++++++
T Consensus 292 ~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~ 366 (376)
T 3f0h_A 292 AKIK-DLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNA 366 (376)
T ss_dssp HHTT-TSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHH
T ss_pred HHHH-HcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHH
Confidence 9999 876 4444433 2333332 4454 456677776699998762 999864 389999999999
Q ss_pred HHHHHhh
Q 012628 451 IIDSYHN 457 (459)
Q Consensus 451 l~~~~~~ 457 (459)
|++++++
T Consensus 367 l~~~l~~ 373 (376)
T 3f0h_A 367 FKDLQKR 373 (376)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 134
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.96 E-value=1.7e-27 Score=235.96 Aligned_cols=305 Identities=14% Similarity=0.040 Sum_probs=211.7
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEE
Q 012628 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV 180 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~V 180 (459)
+.+.+.+++.+.+..+. ..|.+..+..++|+++++++.. ++.|++ ++| |++++++ +... +.+||+|
T Consensus 15 ~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~al~~~--l~~l~~~~gd~V 81 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA-------AHALAV--TNG-THALELA--LQVMGVGPGTEV 81 (388)
T ss_dssp CCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC-------SEEEEE--SCH-HHHHHHH--HHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHhCC-------CeEEEe--CCH-HHHHHHH--HHHcCCCCcCEE
Confidence 45899999999887643 5677888999999999999743 245666 655 9999998 3333 5699999
Q ss_pred EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012628 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE 260 (459)
Q Consensus 181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~ 260 (459)
+++.|+|..+...++..|++++.+|++ ++++.+|++.+++++++ ++++++ |+||||.+ .++++|.++|++
T Consensus 82 i~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~n~tG~~---~~l~~i~~la~~ 151 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVTP---RTKVIM---PVHMAGLM---ADMDALAKISAD 151 (388)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEEC---CBCGGGCC---CCHHHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcCc---CceEEE---EeCCccCc---CCHHHHHHHHHH
Confidence 999999999999999999999999985 33588999999999965 677666 89999999 567889999999
Q ss_pred cCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhH--HHHHHHHHHhhc
Q 012628 261 KNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL--AARVKSQLKRLA 337 (459)
Q Consensus 261 ~~~~ii~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~--~~~~~~~~~~~~ 337 (459)
||+++|+|++|... .+.+. .+ ...+ ++.+.||||..+++|.|.||+++ .++.. .+.+... ....
T Consensus 152 ~~~~li~D~a~~~g~~~~~~-----~~----~~~~-~i~~~S~s~~K~l~g~~~G~~~~--~~~~~~~~~~~~~~-~~~~ 218 (388)
T 1b9h_A 152 TGVPLLQDAAHAHGARWQGK-----RV----GELD-SIATFSFQNGKLMTAGEGGAVVF--PDGETEKYETAFLR-HSCG 218 (388)
T ss_dssp HTCCBCEECTTCTTCEETTE-----EG----GGSS-SCEEEECCTTSSSCSSSCEEEEE--CTTCHHHHHHHHHH-TBTT
T ss_pred cCCEEEEecchhcCCccCCe-----ec----cccc-ceEEEEccCCCcccCCCeEEEEE--CCHHHHHHHHHHHH-HhCC
Confidence 99999999998753 22211 11 1112 57888999777777789999854 33333 3333221 1100
Q ss_pred c-----------cccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc----
Q 012628 338 R-----------PMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL---- 401 (459)
Q Consensus 338 ~-----------~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~---- 401 (459)
. ..+. ..+.+...++...+ +.+++..++++++++++.+.|+ +++ ++.+..
T Consensus 219 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~----------~~l~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~ 284 (388)
T 1b9h_A 219 RPRDDRRYFHKIAGSNMRLNEFSASVLRAQL----------ARLDEQIAVRDERWTLLSRLLG-AID---GVVPQGGDVR 284 (388)
T ss_dssp CCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHH-TST---TCEECCCCTT
T ss_pred CCccCccceeecccccCCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCC---CccccCCCcC
Confidence 0 0011 12222222221111 2245677888889999999998 762 144443
Q ss_pred --CCcceeeecCCC------H-HHHHHHHhcccEEEcCC---------------------------C----------cEE
Q 012628 402 --RQIGMFSFTGLN------K-AQSDNMTNKWHVYMTKD---------------------------G----------RIS 435 (459)
Q Consensus 402 --~~~g~f~~~~l~------~-~~~~~ll~~~gI~v~~g---------------------------g----------Ris 435 (459)
+.+++++|+.+. . ++.+.|.+ +||.+.++ + ||+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 363 (388)
T 1b9h_A 285 ADRNSHYMAMFRIPGLTEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLH 363 (388)
T ss_dssp CCBCCCSEEEEECTTCCHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEE
T ss_pred CCccceEEEEEEeCCcCcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEec
Confidence 355677776542 2 34556655 69988643 0 555
Q ss_pred Ec-cC-ChhhHHHHHHHHHHHHhh
Q 012628 436 LA-GL-SLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 436 ~~-~~-~~e~i~~~~~~l~~~~~~ 457 (459)
+. .. +++++++++++|++++++
T Consensus 364 ~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 364 HRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhh
Confidence 54 35 789999999999998875
No 135
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.96 E-value=5.6e-28 Score=238.88 Aligned_cols=326 Identities=13% Similarity=0.048 Sum_probs=219.2
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+.+.|+.|- ..+++.+.+++.+.... .|.|. ....++++++++++....+ +++++|++ |+||+
T Consensus 5 ~~~~~~p~p-------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~--~~g~t 69 (385)
T 2bkw_A 5 VDTLLIPGP-------IILSGAVQKALDVPSLG----HTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVL--AGSGT 69 (385)
T ss_dssp CCEECSSSS-------CCCCHHHHHTTSCCCCC----TTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEE--ESCTT
T ss_pred cceeecCCC-------cCchHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEE--cCchH
Confidence 445666542 23478888877654321 23332 2567889999999765433 34688999 99999
Q ss_pred hHHHHHHHHHHHh---CCCCEEEEc-CCCCcch-HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 162 GSLRLAAALIERY---FPGAKVLIS-SPTWGNH-KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 162 ~a~~l~~~~~~~~---~~gd~Vlv~-~p~y~~~-~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
++++++. .... .+||+|+++ .|+|..+ ...++..|++++.+|+. +.++.+|++++++++++ .++++++++
T Consensus 70 ~al~~~~--~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~~ 144 (385)
T 2bkw_A 70 LGWDIFA--SNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVT 144 (385)
T ss_dssp HHHHHHH--HHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEE
T ss_pred HHHHHHH--HHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEEE
Confidence 9999984 3334 799999888 4566655 36778899999999983 23567999999999975 246678889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCc
Q 012628 237 CAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERI 313 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l~~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~Ri 313 (459)
+|+||||.+++ +++|+++|++| |+++|+|++|..... .. + +...+.++++.|+||.+ |++| +
T Consensus 145 ~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~-~~--~-------~~~~~~d~~~~s~~K~~~~~~G--~ 209 (385)
T 2bkw_A 145 HVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCE-EF--E-------FDEWGVDFALTASQKAIGAPAG--L 209 (385)
T ss_dssp SEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-CC--C-------TTTTTCSEEEEESSSTTCCCSC--E
T ss_pred ccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCc-cc--c-------ccccCceEEEecCccccccCCc--c
Confidence 99999999976 67899999999 999999999763221 11 1 12224568889999965 5677 5
Q ss_pred ceEEEEeCChhHHH-HHH------------------HHHHhhcc--cc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012628 314 GAMNVVCSSSDLAA-RVK------------------SQLKRLAR--PM-YSNPPVHGARIVANVVGNPALFDEWKAEMEM 371 (459)
Q Consensus 314 G~~~~v~~~~~~~~-~~~------------------~~~~~~~~--~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 371 (459)
||+++ +++.++ .+. ........ .. ..+++..++.++...|+. .. ...+++
T Consensus 210 G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~--~~~~~~ 281 (385)
T 2bkw_A 210 SISLC---SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE---IL--EEGLHK 281 (385)
T ss_dssp EEEEE---CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HH--HHCHHH
T ss_pred eEEEE---cHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH---HH--HccHHH
Confidence 99866 666554 331 11111111 11 123455554444433321 10 112567
Q ss_pred HHHHHHHHHHHHHHHH-hhccCCCCCcccccC-----CcceeeecCCC--HHHHHHHHhcccEEEcCCC---------cE
Q 012628 372 MAGRIKNVRQKLFDSL-SAKDKSGKDWSFILR-----QIGMFSFTGLN--KAQSDNMTNKWHVYMTKDG---------RI 434 (459)
Q Consensus 372 ~~~~~~~~~~~l~~~L-~~~~g~~~~~~~~~~-----~~g~f~~~~l~--~~~~~~ll~~~gI~v~~gg---------Ri 434 (459)
.+++++++++++.+.| + ++| +++..+ ..+.++|+.+. .++.++|.+ +||.+.+|. ||
T Consensus 282 ~~~~~~~~~~~l~~~L~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~iRi 355 (385)
T 2bkw_A 282 RWDLHREMSDWFKDSLVN-GLQ----LTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKS-HGVVIAGGIHKDIGPKYIRI 355 (385)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTC----CEESSCSSSTTBCSSCEEEECSCHHHHHHHHHH-TTEECBCCCCTTTGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHH-hcC----ceecccCcccccCCceEEEecCCHHHHHHHHHH-CCeEEeCCCCcccCCCEEEE
Confidence 8899999999999999 8 775 455532 23556666542 345566654 699998861 99
Q ss_pred E-Ec----cCChhhHHHHHHHHHHHHhhc
Q 012628 435 S-LA----GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 435 s-~~----~~~~e~i~~~~~~l~~~~~~~ 458 (459)
| ++ ..+++++++++++|+++++++
T Consensus 356 s~~~~~~~~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 356 GHMGVTACNKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp CCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred EccccccccCCHHHHHHHHHHHHHHHHhc
Confidence 9 66 248899999999999998765
No 136
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.96 E-value=5.7e-28 Score=240.06 Aligned_cols=330 Identities=12% Similarity=0.045 Sum_probs=211.7
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+...+||+.+.+.+..+. .+|.+.+++.+.++... +.| .+.....++++.+++++ + ++++++ ++|
T Consensus 35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~----~----~~~v~~--~~g 101 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGY--NHAKFNAKIKAQVDKLL-HTSNLYYNENIAAAAKNLAKAS----A----LERVFF--TNS 101 (395)
T ss_dssp CCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHTTCS-CCCTTSBCHHHHHHHHHHHHHH----T----CSEEEE--ESS
T ss_pred CCEEEECCCcHHhccCCC--CCHHHHHHHHHHHHhcc-ccccccCCHHHHHHHHHHHHhc----C----CCeEEE--eCC
Confidence 356899999976444444 37999999999886532 222 23344456666666664 2 478999 999
Q ss_pred chhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHhhhC-------------CCCeeeeeeecCCCCCCCHHHHHH
Q 012628 160 GTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 160 gt~a~~l~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~-------------G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
|+++++.+.+++... .++|+|++++|+|.++....... +.++..+|. .|++++++
T Consensus 102 g~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 174 (395)
T 3nx3_A 102 GTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEK 174 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHH
Confidence 999999986655444 56899999999998764333322 234444433 27899998
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012628 222 DIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (459)
++++ +++++++++++|++|.+ ++++.+++|.++|++||+++|+||+|.+++..+. ...... .+...+ +.
T Consensus 175 ~l~~---~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~~-~~~~~d---~~ 244 (395)
T 3nx3_A 175 LVNE---KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAYEH-AQILPD---IM 244 (395)
T ss_dssp TCCT---TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCS---EE
T ss_pred hccC---CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhHHh-cCCCCC---EE
Confidence 8864 67777777777888776 7888899999999999999999999998864321 111111 112223 34
Q ss_pred cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012628 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 380 (459)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 380 (459)
||||.++ .|+|+||+++ +++. +.+.+.......+.+.+.+++.++...|+...- .+.+++.++..+..+
T Consensus 245 t~sK~~~-~G~~~G~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~----~~~~~~~~~~~~~~~ 313 (395)
T 3nx3_A 245 TSAKALG-CGLSVGAFVI---NQKV---ASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE----EKILENVNKLTPYLE 313 (395)
T ss_dssp EECGGGT-TTSCCEEEEE---CHHH---HHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred Eeccccc-CCCceEEEEE---chhh---hhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHH
Confidence 7899999 5999999976 7773 044443332233335677777776655542100 011233333334444
Q ss_pred HHHHHHHhhccCCCCCcccccCCcceeeecCC----CH-HHHHHHHhcccEEEcCCC----cEEEccC-ChhhHHHHHHH
Q 012628 381 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLAGL-SLAKCEYLADA 450 (459)
Q Consensus 381 ~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~~~-~~e~i~~~~~~ 450 (459)
+.+.+.+. +++. +....+. |.|+|+.+ +. ++.+.|++ +||.+.++| ||+++.. +++++++++++
T Consensus 314 ~~l~~~~~-~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~ 387 (395)
T 3nx3_A 314 QSLDELIN-EFDF---CKKRKGL-GFMQGLSLDKSVKVAKVIQKCQE-NALLLISCGENDLRFLPPLILQKEHIDEMSEK 387 (395)
T ss_dssp HHHHHHHH-HCTT---EEEEEEE-TTEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHH-hCCC---eEEEEeE-EEEEEEEeCCcchHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44444444 4431 2333444 44555432 33 44566665 599999875 8875433 89999999999
Q ss_pred HHHHHhhc
Q 012628 451 IIDSYHNV 458 (459)
Q Consensus 451 l~~~~~~~ 458 (459)
|+++++++
T Consensus 388 l~~~l~~~ 395 (395)
T 3nx3_A 388 LRKALKSF 395 (395)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99998753
No 137
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.96 E-value=6.4e-27 Score=234.80 Aligned_cols=317 Identities=15% Similarity=0.032 Sum_probs=219.8
Q ss_pred eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC-CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHH
Q 012628 87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165 (459)
Q Consensus 87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~ 165 (459)
+|+.|.| ..++ |+.+.+++.+.+..+ .|++ ..+..++|+++++++.. +++++ |+||+++++
T Consensus 20 ~l~~~~p----~~~~-p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~ 81 (424)
T 2po3_A 20 PLLVGRP----NRID-RARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAGV--------RHAVA--TCNATAGLQ 81 (424)
T ss_dssp CEETTCC----CCCC-HHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHH
T ss_pred cccccCC----CCCC-hHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHH
Confidence 6888887 4444 788999998888653 4766 68999999999999743 47888 999999999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012628 166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245 (459)
Q Consensus 166 l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~ 245 (459)
++... +.+||+|++++|+|..+...++..|++++.+|++ ++++.+|++++++++++ +++++++ +||||..
T Consensus 82 ~~l~~---l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~---~~~~v~~---~~~tG~~ 151 (424)
T 2po3_A 82 LLAHA---AGLTGEVIMPSMTFAATPHALRWIGLTPVFADID-PDTGNLDPDQVAAAVTP---RTSAVVG---VHLWGRP 151 (424)
T ss_dssp HHHHH---HTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTSSBCHHHHGGGCCT---TEEEEEE---ECGGGCC
T ss_pred HHHHH---cCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhhCc---CCcEEEE---ECCCCCc
Confidence 98433 3588999999999999999999999999999985 34678999999998865 6777776 3599997
Q ss_pred CCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChh
Q 012628 246 PTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324 (459)
Q Consensus 246 ~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~ 324 (459)
+++++|+++|+++|+++|+|++|. ++.+++ . .+ ....+ +++.||||..+++|+|+||+++ ++++
T Consensus 152 ---~~l~~i~~la~~~~~~li~Dea~~~g~~~~~---~--~~----~~~~d-i~~~S~sk~K~l~~~~~G~~v~--~~~~ 216 (424)
T 2po3_A 152 ---CAADQLRKVADEHGLRLYFDAAHALGCAVDG---R--PA----GSLGD-AEVFSFHATKAVNAFEGGAVVT--DDAD 216 (424)
T ss_dssp ---CCHHHHHHHHHHTTCEEEEECTTCTTCEETT---E--ET----TSSSS-EEEEECCTTSSSCCSSCEEEEE--SCHH
T ss_pred ---CCHHHHHHHHHHcCCEEEEECccccCCeECC---e--ec----ccccC-EEEEeCCCCCCccCCCCeEEEe--CCHH
Confidence 788899999999999999999988 465432 1 11 11123 8899999666777799999854 3377
Q ss_pred HHHHHHHHHHhhcccccc-----CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 012628 325 LAARVKSQLKRLARPMYS-----NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF 399 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 399 (459)
+++.+...........+. ....+.+..+...+. . .+.+++..++.+++++++.+.|+ +++ ++.+
T Consensus 217 l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~--~-----~~~~~~~~~~~~~~~~~l~~~L~-~~~---g~~~ 285 (424)
T 2po3_A 217 LAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT--S-----LDAFPEVIDRNRRNHAAYREHLA-DLP---GVLV 285 (424)
T ss_dssp HHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHTC-SCT---TEEE
T ss_pred HHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHhc-cCC---Cccc
Confidence 555554432211100000 000111112211111 0 12356677777788888888888 762 1555
Q ss_pred cc-CCcc---eeee-c-------CCCHHHHHHHHhcccEEEcCC--------------------C--c-----EEEc---
Q 012628 400 IL-RQIG---MFSF-T-------GLNKAQSDNMTNKWHVYMTKD--------------------G--R-----ISLA--- 437 (459)
Q Consensus 400 ~~-~~~g---~f~~-~-------~l~~~~~~~ll~~~gI~v~~g--------------------g--R-----is~~--- 437 (459)
.. +.++ +++| + +.+.+.+...+.++||.+.+. + | |+++
T Consensus 286 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~ 365 (424)
T 2po3_A 286 ADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT 365 (424)
T ss_dssp CCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCST
T ss_pred cCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCC
Confidence 54 3333 2332 2 345555554555679998752 0 4 7764
Q ss_pred cCChhhHHHHHHHHHHHHhh
Q 012628 438 GLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 438 ~~~~e~i~~~~~~l~~~~~~ 457 (459)
..+++++++++++|++++++
T Consensus 366 ~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 366 AIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 34899999999999998765
No 138
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.96 E-value=3.1e-27 Score=239.55 Aligned_cols=349 Identities=13% Similarity=0.042 Sum_probs=220.5
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+||+.|.+....+.. +|.|.+++.+.++... +.|....+..++++++++++....+ ...++|++ |+||+
T Consensus 50 G~~~lD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~gGs 122 (460)
T 3gju_A 50 GRKSIDAFAGLYCVNVGYG--RQKIADAIATQAKNLA-YYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GLSGS 122 (460)
T ss_dssp CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHHS-CCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred CCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCchH
Confidence 4578999998654444543 7899999988775422 2333333444455555555443322 23578999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhC-------------CCCeeeeeeec---CCCCCCC----
Q 012628 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYD---PKTVGLD---- 215 (459)
Q Consensus 162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~-------------G~~v~~v~~~~---~~~~~~d---- 215 (459)
++++.+.+++... .++++|++.+|+|.++....... +..+..+|... .++++.+
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 9999997665433 35699999999998765443322 12344444310 0222334
Q ss_pred ----HHHHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012628 216 ----FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (459)
Q Consensus 216 ----~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~ 289 (459)
+++|+++++.. ++++++++++.++|++|. +++++.+++|.++|++||+++|+||+|.+++..+ .......
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~~~- 278 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG---TMFGSDH- 278 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHH-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchHhh-
Confidence 68888888632 135677777777888887 7788889999999999999999999999886532 1222222
Q ss_pred HhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHH---HHhhccccccCCchHHHHHHHHHhCChhhHHHH
Q 012628 290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQ---LKRLARPMYSNPPVHGARIVANVVGNPALFDEW 365 (459)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 365 (459)
.+..++++ +|||.++ .| +|+||+++ +++.++.+... ........+.+.+.+++.++...|+...-
T Consensus 279 ~~~~pdi~---t~sK~l~-gG~~~lg~v~~---~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---- 347 (460)
T 3gju_A 279 YGIKPDLI---TIAKGLT-SAYAPLSGVIV---ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE---- 347 (460)
T ss_dssp HTCCCSEE---EECGGGT-TTSSCCEEEEE---EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH----
T ss_pred cCCCCCee---eeehhhc-CCCCCeEEEEE---CHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh----
Confidence 23333433 7899998 46 89999876 78855555422 11222223336667777777666542110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC----------------CHHHHHHHHhcccEEEc
Q 012628 366 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----------------NKAQSDNMTNKWHVYMT 429 (459)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l----------------~~~~~~~ll~~~gI~v~ 429 (459)
.+.+++.++..+..++.|.+.+. +++. +..+.+.|.++ ++.+ ..++.+.+++ +||.+.
T Consensus 348 ~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~ 421 (460)
T 3gju_A 348 MDLVTNAGETGAYFRAELAKAVG-GHKN---VGEVRGDGMLA-AVEFVADKDDRVFFDASQKIGPQVATALAA-SGVIGR 421 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHT-TSTT---EEEEEEETTEE-EEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh-cCCC---eEEEeeeeEEE-EEEEccCccccccccchHHHHHHHHHHHHH-CCeEEe
Confidence 11245556666666666766666 5532 34445555443 3211 1234556666 599999
Q ss_pred CCC-----cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012628 430 KDG-----RISLA-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 430 ~gg-----Ris~~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
|+| ||+.. ..+++++++++++|+++++++
T Consensus 422 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 422 AMPQGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp ECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 864 88743 238999999999999998764
No 139
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.96 E-value=2.4e-27 Score=237.61 Aligned_cols=327 Identities=14% Similarity=0.074 Sum_probs=216.3
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+...+||+.|...+..++ .+|.+.+++.+.++.... ..| +.....++++.+++++ + .++|++ |+|
T Consensus 56 g~~~lD~~~~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~g 122 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGH--CHPALVEALKSQGETLWHTSNVF-TNEPALRLGRKLIDAT----F----AERVLF--MNS 122 (420)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTS-CCHHHHHHHHHHHHHS----S----CSEEEE--ESS
T ss_pred CCEEEEccccccccccCC--CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCeEEE--eCC
Confidence 356889998854233344 278999999988864211 113 3344456666666663 2 478999 999
Q ss_pred chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchH-HHhhhCCCC------------eeeeeeecCCCCCCCHHHHH
Q 012628 160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~-----~g-d~Vlv~~p~y~~~~-~~~~~~G~~------------v~~v~~~~~~~~~~d~e~l~ 220 (459)
|++|++++.+++.... +| ++|++++|+|..+. ..+...|.+ +..+|. .|+++++
T Consensus 123 gteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le 195 (420)
T 2pb2_A 123 GTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVK 195 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHH
Confidence 9999999866543221 66 59999999997664 344445543 333332 3899999
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012628 221 ADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (459)
Q Consensus 221 ~~i~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (459)
+++++ +++++++++++||+|. +++.+++++|.++|++||+++|+||+|.++++.+ ....... .+..++++
T Consensus 196 ~~i~~---~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g---~~~~~~~-~~~~~dii-- 266 (420)
T 2pb2_A 196 AVMDD---HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---DLFAYMH-YGVTPDIL-- 266 (420)
T ss_dssp HHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHHHH-HTCCCSEE--
T ss_pred HHhcc---CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCC---cHHHHHh-cCCCCCeE--
Confidence 99875 7888888888998884 6999999999999999999999999998876542 1222222 23334544
Q ss_pred EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 379 (459)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 379 (459)
||||.++ +|+|+||+++ ++++++.+ .......+.+.+.+++.++...|+... + ++..++++++
T Consensus 267 -t~sK~l~-~G~~iG~~~~---~~~l~~~l----~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~~~~~~~~~ 329 (420)
T 2pb2_A 267 -TSAKALG-GGFPVSAMLT---TQEIASAF----HVGSHGSTYGGNPLACAVAGAAFDIIN------T--PEVLQGIHTK 329 (420)
T ss_dssp -EECGGGG-TTSCCEEEEE---CHHHHTTC----C----CCEECCCHHHHHHHHHHHHHHS------S--HHHHHHHHHH
T ss_pred -Eeccccc-CCCceEEEEE---hHHHHHhh----cCCCcCcccCcCHHHHHHHHHHHHHHH------h--ccHHHHHHHH
Confidence 7899999 8999999976 66643332 221122233566777766655543211 0 2456677777
Q ss_pred HHHHHHHHhhcc--CCCCCcccccCCcceeeecCC------CH-HHHHHHHhcccEEEcCCC----cEEEc-cCChhhHH
Q 012628 380 RQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCE 445 (459)
Q Consensus 380 ~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~e~i~ 445 (459)
++++.+.|+ ++ ++|. +....+.| .|+|+.+ +. ++.+.|++ +||.+.++| ||+++ ..++++++
T Consensus 330 ~~~l~~~L~-~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~~iRl~~~~~~t~eei~ 405 (420)
T 2pb2_A 330 RQQFVQHLQ-AIDEQFDI-FSDIRGMG-LLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAGADVMRFAPSLVVEEADIH 405 (420)
T ss_dssp HHHHHHHHH-HHHHHHCC-EEEEEEET-TEEEEEECGGGTTCHHHHHHHHHH-TTEECEESSTTEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHH-HHHhcCCC-eEEEEecc-eEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCCCCEEEEECCCCCCHHHHH
Confidence 888888887 54 2211 22234444 4444432 23 45666666 699999875 88854 23899999
Q ss_pred HHHHHHHHHHhhc
Q 012628 446 YLADAIIDSYHNV 458 (459)
Q Consensus 446 ~~~~~l~~~~~~~ 458 (459)
+++++|+++++++
T Consensus 406 ~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 406 EGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 140
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.96 E-value=2e-27 Score=236.50 Aligned_cols=316 Identities=16% Similarity=0.087 Sum_probs=219.4
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
.+.+||+.|.+ .. ++.+.+++.+.+.. ..|.+..+..++|+++++++.. +++++ +.+|++
T Consensus 30 ~~~id~~~~~~----~~---~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~~~--------~~~v~--~~~Gt~ 89 (399)
T 2oga_A 30 VPFLDLKAAYE----EL---RAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYCET--------DHAVG--VNSGMD 89 (399)
T ss_dssp BCSCCHHHHHH----HT---HHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHTTS--------SEEEE--ESCHHH
T ss_pred CcccccCcCCC----CC---CHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHCC--------CeEEE--ecCHHH
Confidence 36789999886 22 48899999888764 3576778899999999999643 24566 788899
Q ss_pred HHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCC
Q 012628 163 SLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (459)
Q Consensus 163 a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NP 241 (459)
++.++ +... +.+||+|++++|+|..+...++..|++++.+|++ ++++.+|++.+++++++ ++++++ ++||
T Consensus 90 a~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~n~ 160 (399)
T 2oga_A 90 ALQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPH-EDHPTLDPLLVEKAITP---RTRALL---PVHL 160 (399)
T ss_dssp HHHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-SSSSSBCHHHHHHHCCT---TEEEEC---CBCG
T ss_pred HHHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecC-CCCCCcCHHHHHHhcCC---CCeEEE---EeCC
Confidence 99998 3333 5699999999999999999999999999999985 33578999999999875 677766 5799
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEE
Q 012628 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVV 319 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v 319 (459)
||.+. ++++|.++|+++|+++|+||+|..+...+ ... + ... .++++.|+ ||.++++| |.||++
T Consensus 161 tG~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~--~~~--~----~~~-~di~~~S~~~sK~~~~~G-~~g~~~-- 225 (399)
T 2oga_A 161 YGHPA---DMDALRELADRHGLHIVEDAAQAHGARYR--GRR--I----GAG-SSVAAFSFYPGKNLGCFG-DGGAVV-- 225 (399)
T ss_dssp GGCCC---CHHHHHHHHHHHTCEECEECTTCTTCEET--TEE--T----TCT-TCEEEEECCTTSSSCCSS-CCEEEE--
T ss_pred cCCcc---CHHHHHHHHHHcCCEEEEECcccccCccC--Cee--c----ccc-cCEEEEeCCCCccCCcCC-ceEEEE--
Confidence 99984 57889999999999999999987553211 111 1 111 25888898 79999889 999984
Q ss_pred eCChhHHHHHHHHHHhhcc--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 320 CSSSDLAARVKSQLKRLAR--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
+.+++..+.+......... ......+.+.+.++...++. +++..++.+++++++.+.|+ ++
T Consensus 226 ~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~-~~ 294 (399)
T 2oga_A 226 TGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH----------LDSWNGRRSALAAEYLSGLA-GL 294 (399)
T ss_dssp ESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHTT-TC
T ss_pred eCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc-cC
Confidence 4457755554432211000 00112344444444333321 23445566667788888888 76
Q ss_pred -CCCCCcccc-cCCcceeeec-----CCCHH-HHHHHHhcccEEEcCC-----------------------------C--
Q 012628 392 -KSGKDWSFI-LRQIGMFSFT-----GLNKA-QSDNMTNKWHVYMTKD-----------------------------G-- 432 (459)
Q Consensus 392 -g~~~~~~~~-~~~~g~f~~~-----~l~~~-~~~~ll~~~gI~v~~g-----------------------------g-- 432 (459)
| +++. .+.++.++|. ..+.+ +.+.|.+ +||.+.++ +
T Consensus 295 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l 369 (399)
T 2oga_A 295 PG----IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVL 369 (399)
T ss_dssp TT----CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEE
T ss_pred CC----ccccCCCCCCcceeEEEEEECCCHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEE
Confidence 3 3433 2444555542 22444 4555555 69988652 2
Q ss_pred cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 433 RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
||++.. .+++++++++++|+++++++
T Consensus 370 Ri~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 370 SLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 666653 38999999999999998875
No 141
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.96 E-value=1.6e-27 Score=237.58 Aligned_cols=324 Identities=14% Similarity=0.129 Sum_probs=214.3
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCc---ccHH--HHH-----HHHHHHhcCCCCccccCce
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GLAA--FNK-----VTAELLFGADNSVLKEQRV 152 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---g~~~--lr~-----aia~~l~~~~~~~~~~~~i 152 (459)
.+.|+|..|.+ +. ++.+.+++.+.+.......|+... |.+. +++ .+++++... +++|
T Consensus 23 ~~~i~~~~~~~------~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~------~~~i 89 (407)
T 2dkj_A 23 REGLELIASEN------FV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA------WANV 89 (407)
T ss_dssp HTSEECCTTCC------CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEEC
T ss_pred hcceeeccCCC------CC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC------cceE
Confidence 46899998875 22 889999999887542234564332 4442 333 666665321 4456
Q ss_pred EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCC
Q 012628 153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~---~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~ 228 (459)
++ ++ |++++.++.+. .+.+||+|++++|+|..+ ...++..|.++..+++. +++++.+|++.+++++++ .
T Consensus 90 ~~--~s-Gt~a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~ 162 (407)
T 2dkj_A 90 QP--HS-GSQANMAVYMA--LMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE--H 162 (407)
T ss_dssp CC--SS-HHHHHHHHHHH--HCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH--H
T ss_pred Ee--cc-hHHHHHHHHHH--hcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh--c
Confidence 55 55 56699988443 367999999999999888 34556667755556553 234678999999999974 1
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (459)
+++++++++|+|| ... ++++|.++|++||+++|+||+|.. +.+.+... .. .. ..+++++|+||.
T Consensus 163 ~~~~v~~~~p~~~--~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~----~~--~~di~~~s~sK~-- 227 (407)
T 2dkj_A 163 RPKVIVAGASAYP--RFW---DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHP--NP----LP--YAHVVTSTTHKT-- 227 (407)
T ss_dssp CCSEEEECCSSCC--SCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSC--CC----TT--TCSEEEEESSGG--
T ss_pred CCeEEEEeccccC--CCC---CHHHHHHHHHHcCCEEEEEccccccccccCccC--Cc----cc--cccEEEEecccc--
Confidence 4566777999998 443 488999999999999999999886 43222110 00 11 257889999994
Q ss_pred cCCCCcceEEEEeCC-hhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 308 LYAERIGAMNVVCSS-SDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS 386 (459)
Q Consensus 308 ~~G~RiG~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (459)
++|+|+||+++ + ++..+.+...... +...+++.....++...|... . .+.+++.+++++++++++.+.
T Consensus 228 l~g~~~G~~~~---~~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~~ 296 (407)
T 2dkj_A 228 LRGPRGGLILS---NDPELGKRIDKLIFP---GIQGGPLEHVIAGKAVAFFEA--L---QPEFKEYSRLVVENAKRLAEE 296 (407)
T ss_dssp GCCCSCEEEEE---SCHHHHHHHHHHHTT---TTCSSCCHHHHHHHHHHHHHH--H---SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEE---CCHHHHHHHHhhhcc---cccCCCcHHHHHHHHHHHHHH--H---HhhHHHHHHHHHHHHHHHHHH
Confidence 46899999965 5 6755554433211 222233332222333333211 0 134678889999999999999
Q ss_pred HhhccCCCCCccccc-CCcceeeecCC-----CHHHHHHHHhcccEEEcCC------------C--cEEEcc-----CCh
Q 012628 387 LSAKDKSGKDWSFIL-RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG-----LSL 441 (459)
Q Consensus 387 L~~~~g~~~~~~~~~-~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~-----~~~ 441 (459)
|+ ++| +++.. +..++|+|+.+ +.+.+...+.++||.+.+| + ||+++. .++
T Consensus 297 L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~ 371 (407)
T 2dkj_A 297 LA-RRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTP 371 (407)
T ss_dssp HH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCG
T ss_pred HH-hCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCH
Confidence 99 776 45554 34566777643 4444444445579998864 1 999863 489
Q ss_pred hhHHHHHHHHHHHHhh
Q 012628 442 AKCEYLADAIIDSYHN 457 (459)
Q Consensus 442 e~i~~~~~~l~~~~~~ 457 (459)
+++++++++|++++++
T Consensus 372 ~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 372 EEMPLVAELIDRALLE 387 (407)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998865
No 142
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.96 E-value=8.5e-28 Score=243.09 Aligned_cols=342 Identities=13% Similarity=-0.004 Sum_probs=207.2
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+||..|.+....++. +|.|.+++.+.++.. ..|....+..+.+.++++++....+.. .+++|++ |+||+
T Consensus 63 G~~ylD~~~~~~~~~lGh~--~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sGs 135 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGAS--HPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTAL--FNSGA 135 (453)
T ss_dssp SCEEEESSHHHHTCTTCTT--CHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEE--ESSHH
T ss_pred CCEEEEcCCCcccCcCCCC--CHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEE--eCcHH
Confidence 3578999998764444543 789999998887653 223333333344444444443322211 1468999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCC--------------CCeeeeeeecC--CCCCCC--------HH
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYDP--KTVGLD--------FE 217 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G--------------~~v~~v~~~~~--~~~~~d--------~e 217 (459)
+|++.+.++......+++|++.+|+|.++.......+ ..+..+|+... +.++.+ ++
T Consensus 136 eA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (453)
T 4ffc_A 136 EAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAIS 215 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHH
Confidence 9999997665433456899999999987654433221 13445554211 122333 34
Q ss_pred HHHHHHHcCCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012628 218 GMIADIKAAPGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (459)
Q Consensus 218 ~l~~~i~~~~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (459)
.+++.+.. .+..++++.|+|++| ..++++.+++|.++|++||+++|+||+|.+++..+ ..+.... .+..++
T Consensus 216 ~l~~~i~~---~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g---~~~a~~~-~~~~pd 288 (453)
T 4ffc_A 216 RIETQIGA---QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG---AWFASEH-EGIVPD 288 (453)
T ss_dssp HHHHHTCG---GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHHH-HTCCCS
T ss_pred HHHHhcCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccc---ccchhhh-cCCCcc
Confidence 44444432 345555567888887 45578889999999999999999999999886542 1122222 222233
Q ss_pred EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012628 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 375 (459)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 375 (459)
+.+|||.++. |+|+||+++ +++ +.+.+.......+.+.+.++|.++...|+...- .+.+++.++.
T Consensus 289 ---i~t~sK~~~~-G~~~G~~~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~ 353 (453)
T 4ffc_A 289 ---IVTMAKGIAG-GMPLSAVTG---RAE----LMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE----LDLPARARAI 353 (453)
T ss_dssp ---EEEECGGGGT-TSSCEEEEE---EHH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH----TTHHHHHHHH
T ss_pred ---hHhhhhhhcC-CcCeEEEEE---CHH----HHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh----hhHHHHHHHH
Confidence 3479999995 999999866 777 444444333344446777777777666542110 0112333333
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC------------CHHHHHHHHhcccEEEcCCC------cEEEc
Q 012628 376 IKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------------NKAQSDNMTNKWHVYMTKDG------RISLA 437 (459)
Q Consensus 376 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l------------~~~~~~~ll~~~gI~v~~gg------Ris~~ 437 (459)
.+..++.|.+.+. +++. +..+.+. |.|+|+.+ ..++.+.+++ +||.+.|+| ||+++
T Consensus 354 ~~~l~~~l~~~~~-~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~iRi~~~ 427 (453)
T 4ffc_A 354 EASVTSRLSALAE-EVDI---IGEVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTFGNVIRLLPP 427 (453)
T ss_dssp HHHHHHHHHHHHH-HCSS---EEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTTSCEEEECCC
T ss_pred HHHHHHHHHHHHh-hCCC---eEEEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCCCCEEEEECC
Confidence 3333444444444 4431 2333444 44554432 1234556666 599999865 77655
Q ss_pred cC-ChhhHHHHHHHHHHHHhhc
Q 012628 438 GL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 438 ~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
.. +++++++++++|.++++++
T Consensus 428 ~~~t~e~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 428 LVIGDDLLDEGITALSDIIRAK 449 (453)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 33 8999999999999998764
No 143
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.96 E-value=1.1e-27 Score=240.95 Aligned_cols=340 Identities=11% Similarity=0.012 Sum_probs=211.7
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
...+|+..|.+...-++ .+|.|.+++.+.++... ...| +.....++++.+++++. . .+++|++ |+||
T Consensus 43 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~----~--~~~~v~~--~~gg 111 (433)
T 1zod_A 43 RAILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITP----P--GLDRALL--LSTG 111 (433)
T ss_dssp CEEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSC----T--TCCEEEE--ESCH
T ss_pred CEEEEcccchhccccCC--CCHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhCC----C--CcCEEEE--eCch
Confidence 45789888875222233 27899999988876431 1233 23344566666666632 1 2688999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC------------CCCeeeeeeecC--CCC--------CCCHHH
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA------------RVPWSEYRYYDP--KTV--------GLDFEG 218 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~------------G~~v~~v~~~~~--~~~--------~~d~e~ 218 (459)
+++++++.+++..+..+|+|++.+|+|.++....... ...+..++.... ..+ .+|++.
T Consensus 112 ~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 191 (433)
T 1zod_A 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY 191 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence 9999998655432334689999999997654332211 113334433111 011 246999
Q ss_pred HHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012628 219 MIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296 (459)
Q Consensus 219 l~~~i~~~-~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (459)
+++.+++. ++++++++++..+||||. +++++.+++|.++|++||+++|+||+|.+++..+ ....+.. ....+++
T Consensus 192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g---~~~~~~~-~~~~~di 267 (433)
T 1zod_A 192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG---TMFACQR-DGVTPDI 267 (433)
T ss_dssp HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHHH-HTCCCSE
T ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---hHhHHhh-cCCCCCE
Confidence 99998742 125666665444689996 6789999999999999999999999999886432 1112222 2223343
Q ss_pred EEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012628 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 376 (459)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 376 (459)
.||||.++. |+|+||+++ +++.++.+... ......+.+.+.+++.++...|+.. .+ +...+++
T Consensus 268 ---~s~sK~~~~-G~~ig~~~~---~~~~~~~~~~~--~~~~~~t~~~~~~~~~a~~aal~~~------~~--~~~~~~~ 330 (433)
T 1zod_A 268 ---LTLSKTLGA-GLPLAAIVT---SAAIEERAHEL--GYLFYTTHVSDPLPAAVGLRVLDVV------QR--DGLVARA 330 (433)
T ss_dssp ---EEECHHHHT-TSSCEEEEE---CHHHHHHHHHT--TCCCCCTTTTCHHHHHHHHHHHHHH------HH--TTHHHHH
T ss_pred ---EEecccccC-CCCeeEEEE---hHHHHHhhccC--CCCCCCCCCcCHHHHHHHHHHHHHH------Hh--CCHHHHH
Confidence 389999995 999999976 77755444321 1111133355677776665554311 00 2344566
Q ss_pred HHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCC------C--c
Q 012628 377 KNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKD------G--R 433 (459)
Q Consensus 377 ~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~g------g--R 433 (459)
+++++++.+.|+ ++ ..|. +....+.| .|+|+.+ ..++.+.|++ +||.+.|+ + |
T Consensus 331 ~~~~~~l~~~l~-~l~~~~~~-~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~lR 406 (433)
T 1zod_A 331 NVMGDRLRRGLL-DLMERFDC-IGDVRGRG-LLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPGMGGVFR 406 (433)
T ss_dssp HHHHHHHHHHHH-HHHHHCTT-EEEEEEET-TEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTTSCCEEE
T ss_pred HHHHHHHHHHHH-HHHHhCCC-eEEEEEEE-EEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCCCCCEEE
Confidence 666777777776 53 1111 23344444 4555432 1345666765 69999875 3 7
Q ss_pred EEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 434 ISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 434 is~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
|+++. .+++++++++++|+++++++
T Consensus 407 i~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 407 IAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 86542 38999999999999998764
No 144
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.95 E-value=7.9e-27 Score=236.52 Aligned_cols=349 Identities=11% Similarity=-0.012 Sum_probs=214.8
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+||+.|.+....+.. +|.|.+++.+.++... +.|....+..+.++++++++....+ ...++|++ ++||+
T Consensus 49 g~~ylD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ggs 121 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYG--RKDFAEAARRQMEELP-FYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TNSGS 121 (459)
T ss_dssp CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHCS-CCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ESSHH
T ss_pred CCEEEECCCchhcccCCCC--CHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchH
Confidence 3568999998764444543 7899999998886532 2333333344555555555544332 23578999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCC-------------Ceeeeeeec--C-CCCCCC----
Q 012628 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYD--P-KTVGLD---- 215 (459)
Q Consensus 162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~--~-~~~~~d---- 215 (459)
++++.+.+++... .++++|++.+|+|.++.......+. .+..++... . ..+ .|
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~ 200 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEF 200 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHH
Confidence 9999997665433 2579999999999977654443322 223333210 0 112 45
Q ss_pred ----HHHHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012628 216 ----FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (459)
Q Consensus 216 ----~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~ 289 (459)
+++|++.++... ++++++++..++|++|. +++++.+++|.++|++||+++|+||+|.+++..+ .......
T Consensus 201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G---~~~~~~~- 276 (459)
T 4a6r_A 201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG---EWFGHQH- 276 (459)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHHHH-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchHhh-
Confidence 788888887421 24566665555566665 5589999999999999999999999999887543 1222222
Q ss_pred HhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012628 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM 369 (459)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 369 (459)
.+..++++ +|||.++..|+|+||+++ +++.++.+... .......+.+.+.+++.++...|+...- .+.+
T Consensus 277 ~~~~pdi~---t~sK~l~gg~~~lg~v~~---~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~ 345 (459)
T 4a6r_A 277 FGFQPDLF---TAAKGLSSGYLPIGAVFV---GKRVAEGLIAG-GDFNHGFTYSGHPVCAAVAHANVAALRD----EGIV 345 (459)
T ss_dssp HTCCCSEE---EECGGGGTTSSCCEEEEE---CHHHHHHHHHH-CTTHHHHHHCSCHHHHHHHHHHHHHHHH----TCHH
T ss_pred cCCCCCee---ehhhhhcCCCCCccceee---CHHHHHHhhcC-CCcccCCCCCCCHHHHHHHHHHHHHHhc----chHH
Confidence 23334443 689999855599999876 88855555421 1111122335667777777666542110 0112
Q ss_pred HHHH-HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeec--CC-------------CHHHHHHHHhcccEEEcCCC-
Q 012628 370 EMMA-GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GL-------------NKAQSDNMTNKWHVYMTKDG- 432 (459)
Q Consensus 370 ~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~--~l-------------~~~~~~~ll~~~gI~v~~gg- 432 (459)
++.+ +..+..++.|.+.|. +++. +..+.+.|.++.+. .. ..++.+.+++ +||.+.|+|
T Consensus 346 ~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g~ 420 (459)
T 4a6r_A 346 QRVKDDIGPYMQKRWRETFS-RFEH---VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NNLIMRACGD 420 (459)
T ss_dssp HHHHHTHHHHHHHHHHHHHT-TCTT---EEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TTEECEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCC---eEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHH-CCeEEecCCC
Confidence 3333 344444444444554 4431 34455555544331 11 1234566666 599999976
Q ss_pred --cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 433 --RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 --Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
||+... .+++++++++++|+++++++
T Consensus 421 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 421 HIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 787432 29999999999999998753
No 145
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.95 E-value=7.5e-27 Score=235.03 Aligned_cols=327 Identities=14% Similarity=0.017 Sum_probs=212.8
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
...+||+.|.+.+..++ .+|.+.+++.+.++......| +.....++++.+++++. .+++|++ ++||++
T Consensus 56 ~~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sgse 123 (434)
T 2epj_A 56 ARIVDLVLAYGPLILGH--KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-------RGGMIRF--VNSGTE 123 (434)
T ss_dssp CEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-------TTCEEEE--ESSHHH
T ss_pred CEEEEcccchhcccCCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHHH
Confidence 46789999875333344 378999999998876432344 44445677777777752 1578999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh--------------hCCC------CeeeeeeecCCCCCCCHHHHHHH
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--------------DARV------PWSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--------------~~G~------~v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
+++++.++...+.++++|++.+|+|..+..... ..|+ +++.+|. .|++.+++.
T Consensus 124 A~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~ 196 (434)
T 2epj_A 124 ATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERV 196 (434)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHH
Confidence 999986654345567899999999987544221 1232 2344443 389999999
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012628 223 IKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (459)
Q Consensus 223 i~~~~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (459)
+++.++++++++++..+||||.++ +++.+++|.++|++||+++|+||+|.++..+ ....... .+..+++ .|
T Consensus 197 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g----~~~~~~~-~~~~~di---~s 268 (434)
T 2epj_A 197 FAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG----LEGAQGY-FNIEGDI---IV 268 (434)
T ss_dssp HHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS----TTHHHHH-HTCCCSE---EE
T ss_pred HHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC----cchhhHH-hCCCCCe---ee
Confidence 874222566666665667899865 7999999999999999999999999977432 1122222 2223343 38
Q ss_pred CCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc---cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
|||.++. |+|+||+++ +++. .+.+.... ...+.+.+.+++.++...|+.. .+ ++..+++++
T Consensus 269 ~sK~l~~-G~~~G~v~~---~~~~----~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~------~~--~~~~~~~~~ 332 (434)
T 2epj_A 269 LGKIIGG-GFPVGAVAG---SREV----MSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL------EE--EPVYSVSRE 332 (434)
T ss_dssp EEGGGGT-TSSCEEEEE---CHHH----HTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH------HH--SCHHHHHHH
T ss_pred ecchhcC-Ccceeeeee---cHHH----HHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH------Hh--cCHHHHHHH
Confidence 9999995 999999976 7773 33332211 1122245666666665444311 11 244566677
Q ss_pred HHHHHHHHHhhcc----CCCCCcccccCCcceeeecCCC------------------HHHHHHHHhcccEEEcCCC--cE
Q 012628 379 VRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--RI 434 (459)
Q Consensus 379 ~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--Ri 434 (459)
+++++.+.|+ ++ ++ ...+.+. |.|+|+.+. .++.+.|++ +||.+.+++ |+
T Consensus 333 ~~~~l~~~L~-~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~ 406 (434)
T 2epj_A 333 AAKALEEAAS-EVLDRTGL---PYTINRV-ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNLEAV 406 (434)
T ss_dssp HHHHHHHHHH-HHHHHHTC---CEEEEEE-TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSCE
T ss_pred HHHHHHHHHH-HHHhhCCC---cEEEEEe-eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCCCcE
Confidence 7777777776 54 42 1123344 445554321 234556665 699999987 55
Q ss_pred EEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 435 SLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 435 s~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+.. .+++++++++++|+++++++
T Consensus 407 ~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 407 FTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp ECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 4432 28999999999999998764
No 146
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.95 E-value=5.1e-27 Score=237.41 Aligned_cols=342 Identities=11% Similarity=0.027 Sum_probs=221.1
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC--CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
..||+..|...+..+.. +|.|.+++.+.+++.... .+.+.....+|++.+++++.. ..++|++ ++||+
T Consensus 76 ~ylD~~s~~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~------~~~~v~~--~~sGs 145 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHG--HPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPA------GLDTVFF--SDSGS 145 (457)
T ss_dssp EEEETTHHHHTCTTCBT--CHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSST------TEEEEEE--ESSHH
T ss_pred EEEECCCcHhhhccCCC--CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCC------CcCEEEE--eCcHH
Confidence 68999988654444543 789999998887652111 222445566777777777521 1568999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhC--------------CCCeeeeeeecCCCCCCCHHHHHH
Q 012628 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDA--------------RVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~--------------G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
++++++.+++... ..+++|++.+|+|..+....... ...+..+|.........|+++|++
T Consensus 146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~ 225 (457)
T 3tfu_A 146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA 225 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHH
Confidence 9999997665443 23458999999997764433333 123344444212112248899999
Q ss_pred HHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012628 222 DIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~-p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (459)
++++.+++++++++++ ++||+|.++ +++.+++|.++|++||+++|+||+|.+++..+ ..+.... ....++++
T Consensus 226 ~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G---~~~a~~~-~~~~pdii-- 299 (457)
T 3tfu_A 226 QLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG---ALFAADH-AGVSPDIM-- 299 (457)
T ss_dssp HHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSTHHH-HTCCCSEE--
T ss_pred HHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCcccc---chhHhHh-cCCCceEE--
Confidence 9984333677888787 899999776 77889999999999999999999999887543 1222222 23334544
Q ss_pred EcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHH-hhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLK-RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 300 ~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 377 (459)
||||.++ .| +|+||+++ +++.++.+..... ......+.+.+.+++.++...|+.. .+ +...++++
T Consensus 300 -t~sK~l~-gG~~~lG~v~~---~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~------~~--~~~~~~~~ 366 (457)
T 3tfu_A 300 -CVGKALT-GGYLSLAATLC---TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELL------LG--QDWRTRIT 366 (457)
T ss_dssp -EECGGGG-TTSSCCEEEEE---EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHH------HT--SCHHHHHH
T ss_pred -EEChhhh-CCCcceEEEEE---cHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHH------hh--hHHHHHHH
Confidence 8999887 45 79999976 7774444321100 1111223356666666665554311 00 23456666
Q ss_pred HHHHHHHHHHhhccC-CCCCcccccCCcceeeecCC----C-HHHHHHHHhcccEEEcCCC---cEEEcc-CChhhHHHH
Q 012628 378 NVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG---RISLAG-LSLAKCEYL 447 (459)
Q Consensus 378 ~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg---Ris~~~-~~~e~i~~~ 447 (459)
++.+++.+.|+ ++. .|. +..+.+.| .|+++.+ + .++.+.|+++ ||.+.|.| ||+... .++++++++
T Consensus 367 ~~~~~l~~~L~-~l~~~~~-v~~vr~~G-~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~~~~lRi~p~~~~t~eei~~~ 442 (457)
T 3tfu_A 367 ELAAGLTAGLD-TARALPA-VTDVRVCG-AIGVIECDRPVDLAVATPAALDR-GVWLRPFRNLVYAMPPYICTPAEITQI 442 (457)
T ss_dssp HHHHHHHHHHG-GGGGSTT-EEEEEECS-SCEEEEESSCCCHHHHHHHHHHT-TEECCCBTTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCCC-eeeeecCC-eEEEEEECCcccHHHHHHHHHHC-CeEEEecCCEEEEECCCCCCHHHHHHH
Confidence 77777777787 652 111 33344454 4544432 2 3556677775 99999977 777543 289999999
Q ss_pred HHHHHHHHhhc
Q 012628 448 ADAIIDSYHNV 458 (459)
Q Consensus 448 ~~~l~~~~~~~ 458 (459)
+++|+++++++
T Consensus 443 l~~L~~~l~~~ 453 (457)
T 3tfu_A 443 TSAMVEVARLV 453 (457)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 147
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.95 E-value=6.6e-27 Score=236.73 Aligned_cols=330 Identities=12% Similarity=0.007 Sum_probs=203.0
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
...+||+.|.+.+..++ .+|.|.+++.+.++... .| .+..++++++++++....+ .+++|++ ++||++
T Consensus 57 ~~~iD~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~gg~e 124 (453)
T 2cy8_A 57 NVYLDFFGGHGALVLGH--GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGSGTE 124 (453)
T ss_dssp CEEEESCTTTTSCTTCB--TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESCHHH
T ss_pred CEEEECcccHhhcccCC--CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCCHHH
Confidence 46789999975333344 37899999999886532 22 2345788888888766543 3688999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh-----------CCCC------eeeeeeecCCCCCCCHHHHHHHHHc
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-----------ARVP------WSEYRYYDPKTVGLDFEGMIADIKA 225 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-----------~G~~------v~~v~~~~~~~~~~d~e~l~~~i~~ 225 (459)
+++++.++...+.++++|++.+|+|.++...+.. .|+. +..+|. .|++.+++.+++
T Consensus 125 A~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~ 197 (453)
T 2cy8_A 125 TTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFAN 197 (453)
T ss_dssp HHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHh
Confidence 9999866533345568899999999866543221 1321 222221 389999999874
Q ss_pred CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012628 226 APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK 304 (459)
Q Consensus 226 ~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 304 (459)
.++++++++++..+||||.+ .+++.+++|.++|++||+++|+||+|.++ ..+ ....... .+..+++ .||||
T Consensus 198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g---~~~~~~~-~~~~~di---~s~sK 269 (453)
T 2cy8_A 198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG---NHGMQAL-LDVQPDL---TCLAK 269 (453)
T ss_dssp HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC---TTHHHHH-HTCCCSE---EEEEG
T ss_pred cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC---chhhhHH-hCCCCcE---EEECh
Confidence 22256666655556889975 57999999999999999999999999877 322 1222222 2223343 38999
Q ss_pred CcccCCCCcceEEEEeCChhHHHHHHHH-HHhhccccccCCchHHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 012628 305 NLGLYAERIGAMNVVCSSSDLAARVKSQ-LKRLARPMYSNPPVHGARIVANVVGN-PALFDEWKAEMEMMAGRIKNVRQK 382 (459)
Q Consensus 305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~ 382 (459)
.++ +|+|+||+++ +++.++.+... ........+.+.+.+++.++...|+. . .+...+++++++++
T Consensus 270 ~l~-~G~~~G~v~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~---------~~~~~~~~~~~~~~ 336 (453)
T 2cy8_A 270 ASA-GGLPGGILGG---REDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL---------EDDVCAKINDLGQF 336 (453)
T ss_dssp GGG-TTSSCEEEEE---CHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHH
T ss_pred hhh-CCcceEEEec---hHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHH
Confidence 999 5999999976 77744333220 00001112235566666666554432 1 02344566666666
Q ss_pred HHHHHhhcc----CCCCCcccccCCcceeeecCCC------------------------HHHHHHHHhcccEEEcCCCcE
Q 012628 383 LFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------------KAQSDNMTNKWHVYMTKDGRI 434 (459)
Q Consensus 383 l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------------~~~~~~ll~~~gI~v~~ggRi 434 (459)
+.+.|+ ++ +. .....+. |.|+|+.+. .++.+.|++ +||.+.|++|+
T Consensus 337 l~~~L~-~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~ 410 (453)
T 2cy8_A 337 AREAMN-HLFARKGL---NWLAYGR-FSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGRGSV 410 (453)
T ss_dssp HHHHHH-HHHHHTTC---CEEEECC-TTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTTTEE
T ss_pred HHHHHH-HHHhhCCC---cEEEEEe-eeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCCCCE
Confidence 666665 43 31 1223444 445555321 234566666 59999888755
Q ss_pred EEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 435 SLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 435 s~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
.+.. .+++++++++++|+++++++
T Consensus 411 ~l~~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 411 FLSAQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeeccCCHHHHHHHHHHHHHHHHHH
Confidence 4332 28999999999999988753
No 148
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.95 E-value=5.8e-27 Score=237.09 Aligned_cols=338 Identities=10% Similarity=0.022 Sum_probs=209.4
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC-CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+...+||+.|.+.+..+.. +|.|.+++.+.++.... ..+.+.....++++.+++++... .+ |++ |+||
T Consensus 48 g~~~lD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~------~~-v~~--~~gg 116 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYG--RKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGE------YV-IFF--SNSG 116 (452)
T ss_dssp CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSC------EE-EEE--ESSH
T ss_pred CCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCC------ce-EEE--eCch
Confidence 3578999999654444543 78999999998865321 11123334455556666554221 34 888 9999
Q ss_pred hhHHHHHHHHHHHh---C---CCCEEEEcCCCCcchHHHhhhCCCC-------------eeeeeeecCCCCCC-C-----
Q 012628 161 TGSLRLAAALIERY---F---PGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGL-D----- 215 (459)
Q Consensus 161 t~a~~l~~~~~~~~---~---~gd~Vlv~~p~y~~~~~~~~~~G~~-------------v~~v~~~~~~~~~~-d----- 215 (459)
+++++.+.+++... . ++|+|++.+|+|.++.......+.. +..++......+.. |
T Consensus 117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (452)
T 3n5m_A 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY 196 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence 99999997665433 4 7899999999998876544444332 22333210000111 1
Q ss_pred ----HHHHHHHHH-cCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012628 216 ----FEGMIADIK-AAPGGSFILLHGCA-HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (459)
Q Consensus 216 ----~e~l~~~i~-~~~~~~~~ii~~~p-~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~ 288 (459)
+++|++.++ ..++++++++++++ +| ||.++ +++.+++|.++|++||+++|+||+|.+++..+. .....
T Consensus 197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~~- 271 (452)
T 3n5m_A 197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGFM- 271 (452)
T ss_dssp GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchhh-
Confidence 899999997 22236777777777 89 99765 888899999999999999999999998875431 11111
Q ss_pred HHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHh------hccccccCCchHHHHHHHHHhCChhh
Q 012628 289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR------LARPMYSNPPVHGARIVANVVGNPAL 361 (459)
Q Consensus 289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~~ 361 (459)
..+..+++ .+|||.++. | +|+||+++ +++ +.+.+.. .....+.+.+.+++.++...|+...
T Consensus 272 ~~~~~~di---~t~sK~l~~-G~~~ig~~~~---~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 339 (452)
T 3n5m_A 272 NYDVKPDI---ITMAKGITS-AYLPLSATAV---KRE----IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIE- 339 (452)
T ss_dssp GTTCCCSE---EEECGGGGT-TSSCCEEEEE---EHH----HHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHH-
T ss_pred hcCCCCCE---EeecccccC-CCcceEEEEE---CHH----HHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHH-
Confidence 11222333 379999995 9 99999976 777 4443321 1122333567777777765554210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC----------C----HHHHHHHHhccc
Q 012628 362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----------N----KAQSDNMTNKWH 425 (459)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l----------~----~~~~~~ll~~~g 425 (459)
+ +...++++++.+++.+.|+ ++ +.| .+..+.+.|.++ ++.+ + .++.+.+++ +|
T Consensus 340 -----~--~~~~~~~~~~~~~l~~~L~-~~~~~~~-~~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 408 (452)
T 3n5m_A 340 -----N--ENLIERSAQMGSLLLEQLK-EEIGEHP-LVGDIRGKGLLV-GIELVNDKETKEPIDNDKIASVVNACKE-KG 408 (452)
T ss_dssp -----H--TTHHHHHHHHHHHHHHHHH-HHHTTCT-TEEEEEESSSCE-EEEEEEETTTTEECCHHHHHHHHHHHHH-TT
T ss_pred -----h--ccHHHHHHHHHHHHHHHHH-HHHhcCC-CeEEEEEEEEEE-EEEEecCCcccCCCCHHHHHHHHHHHHH-CC
Confidence 0 1233444444455555444 32 111 133445555443 3322 1 234556666 59
Q ss_pred EEEcCCC----------cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 426 VYMTKDG----------RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 426 I~v~~gg----------Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
|.+.|++ ||+++. .+++++++++++|+++++++
T Consensus 409 v~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 409 LIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp EECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred cEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9998763 776433 28999999999999998763
No 149
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.95 E-value=5.6e-26 Score=228.30 Aligned_cols=328 Identities=13% Similarity=0.050 Sum_probs=204.6
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+|+..|.+.+..++. +|.|.+++.+.++....+.| +.....++++.+++++. . ++++++ ++||+
T Consensus 52 g~~ylD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~------~~~v~~--~~sGs 119 (429)
T 4e77_A 52 GKAYIDYVGSWGPMILGHN--HPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-T------MDMVRM--VNSGT 119 (429)
T ss_dssp CCEEEESSGGGTTCTTCBT--CHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T------CSEEEE--ESSHH
T ss_pred CCEEEECCCchhccccCCC--CHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-C------CCEEEE--eCcHH
Confidence 4578999998864444543 79999999998866432334 55666778888887753 1 578999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-hCC-------------C------CeeeeeeecCCCCCCCHHHHHH
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------V------PWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~G-------------~------~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
++++++.++...+.++++|++.+++|.++..... ..| . .+..+|. .|++++++
T Consensus 120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~ 192 (429)
T 4e77_A 120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQ 192 (429)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHH
Confidence 9999997765445577899999999987654211 111 1 1111211 28999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012628 222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~p~NPTG~~~--s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (459)
.+++.++++++++ ++|+||+|.++ +++.+++|.++|++||+++|+||+|.++ ..+ ....... ....+++
T Consensus 193 ~l~~~~~~~~~vi-~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g---~~~~~~~-~~~~pdi--- 263 (429)
T 4e77_A 193 AFEQYPQEVACII-VEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVA---LAGAQDY-YHVIPDL--- 263 (429)
T ss_dssp HHHHSTTTEEEEE-ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTB---TTCHHHH-TTCCCSE---
T ss_pred HHHhcCCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccC---cchHHHh-cCCCCCe---
Confidence 9986444555555 56666665433 3455999999999999999999999988 321 1112222 2223343
Q ss_pred EcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh---ccccccCCchHHHHHHHHHhC---ChhhHHHHHHHHHHHH
Q 012628 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMMA 373 (459)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~~~~~~ 373 (459)
.||||.++ +|+|+||+++ +++ +++.+... ....+.+.+.+++.++...|+ +.++ +++.+
T Consensus 264 ~t~sK~~~-~G~~~G~~~~---~~~----~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~-------~~~~~ 328 (429)
T 4e77_A 264 TCLGKIIG-GGMPVGAFGG---RRE----VMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGV-------YETLT 328 (429)
T ss_dssp EEEEGGGG-TTSCCEEEEE---CHH----HHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTH-------HHHHH
T ss_pred eeeccccc-CCCCeEEEEE---CHH----HHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCH-------HHHHH
Confidence 38999999 7999999866 777 33333321 112222556666666654443 3222 22333
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--C-----------------HHHHHHHHhcccEEEcCCC--
Q 012628 374 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-----------------KAQSDNMTNKWHVYMTKDG-- 432 (459)
Q Consensus 374 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~-----------------~~~~~~ll~~~gI~v~~gg-- 432 (459)
+..+..++.|.+.+. +++. ....+..|.|+|+.+ . .++.+.|++ +||.+.+++
T Consensus 329 ~~~~~l~~~L~~~~~-~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~ 402 (429)
T 4e77_A 329 ELTDSLATGLRHAAK-EENI----PLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLAPSAFE 402 (429)
T ss_dssp HHHHHHHHHHHHHHH-HTTC----CCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECCSSTTS
T ss_pred HHHHHHHHHHHHHHH-hCCC----ceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEeecCCC
Confidence 333333444444444 4442 222233455555432 1 345667766 499999987
Q ss_pred cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 433 RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
|+.+... +++++++++++|+++++++
T Consensus 403 ~~~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 403 AGFMSLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp CEECCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred CEEEeccCCHHHHHHHHHHHHHHHHhC
Confidence 6554432 8999999999999998763
No 150
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.95 E-value=1e-26 Score=233.76 Aligned_cols=319 Identities=16% Similarity=0.117 Sum_probs=199.1
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC---------cccHHHHHHHHHHHhcCCCCccccCceEE
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---------EGLAAFNKVTAELLFGADNSVLKEQRVAT 154 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---------~g~~~lr~aia~~l~~~~~~~~~~~~i~~ 154 (459)
+++.|..+.+ . +.++.+.+++.+.+... ..|+.. ....++|+++++++.. ++++|++
T Consensus 18 ~~~~Ld~~~~----~--~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~ 83 (432)
T 3a9z_A 18 RKVYMDYNAT----T--PLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKAKDIINTARASLAKMIGG------KPQDIIF 83 (432)
T ss_dssp CCEECBTTTC----C--CCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE
T ss_pred CcEEeeCCcc----C--CCCHHHHHHHHHHHHHh--cCCCccCcHHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE
Confidence 5677776654 2 34899999999887542 233211 1246999999999743 2678999
Q ss_pred eecccchhHHHHHHHHHHH------hCCCCEEEEcCCCCcch-----------------HHHhhhCCCCeeeeeeecCCC
Q 012628 155 VQGLSGTGSLRLAAALIER------YFPGAKVLISSPTWGNH-----------------KNIFNDARVPWSEYRYYDPKT 211 (459)
Q Consensus 155 ~~t~ggt~a~~l~~~~~~~------~~~gd~Vlv~~p~y~~~-----------------~~~~~~~G~~v~~v~~~~~~~ 211 (459)
|+|++++++++.+.+.. ..+||+|++++|+|..| ....+..|++++.+|+++ ++
T Consensus 84 --~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~-~~ 160 (432)
T 3a9z_A 84 --TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK-VN 160 (432)
T ss_dssp --ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT-TT
T ss_pred --eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc-cc
Confidence 99999999998554421 14899999999999875 334456799999999852 35
Q ss_pred CCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC----------CeeEEeccCCCCCCCCCCC
Q 012628 212 VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN----------HIPFFDVAYQGFASGSLDN 281 (459)
Q Consensus 212 ~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~----------~~ii~Deay~~~~~~~~~~ 281 (459)
+.+|++.+++++++ +++++++++|+||||.+++. ++|.++|+++| +++|+|++|..... . .
T Consensus 161 ~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~~---~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-~--~ 231 (432)
T 3a9z_A 161 GQVEVEDILAAVRP---TTCLVTIMLANNETGVIMPI---SEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-R--V 231 (432)
T ss_dssp SSCCHHHHHHTCCT---TEEEEECCSBCTTTCBBCCH---HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-C--C
T ss_pred CCcCHHHHHHhccC---CceEEEEECcccCcccccCH---HHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-c--c
Confidence 67999999998875 78899999999999999875 56888899998 99999999865321 1 1
Q ss_pred ChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh-------ccccccCCchHHHHHHHH
Q 012628 282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL-------ARPMYSNPPVHGARIVAN 354 (459)
Q Consensus 282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 354 (459)
.+.. ... .+++.|+||.+| .|+||+++ +++.. ...+... ......+++..++.++..
T Consensus 232 ---~~~~---~~~-d~~~~s~~K~~g---~~~G~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a 295 (432)
T 3a9z_A 232 ---DVED---LGV-DFLTIVGHKFYG---PRIGALYV---RGVGK---LTPLYPMLFGGGQERNFRPGTENTPMIAGLGK 295 (432)
T ss_dssp ---CHHH---HCC-SEEEEEGGGTTC---CSCEEEEE---TTBTT---TBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHH
T ss_pred ---Chhh---cCC-CEEEEehhHhcC---CcceEEEE---ccccc---cCCcCceeecCCccccccCCCcCHHHHHHHHH
Confidence 1211 122 356899999875 56999966 54420 1111110 011112345555544444
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccc--cC------Cc--ceeeecCC--CHHH-HHHH
Q 012628 355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI--LR------QI--GMFSFTGL--NKAQ-SDNM 420 (459)
Q Consensus 355 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~--~~------~~--g~f~~~~l--~~~~-~~~l 420 (459)
.++ +. .+.+++++++++++++++.+.|+ ++ | +.+. .+ .+ ..|.+.+. +.+. .+.+
T Consensus 296 al~---~~---~~~~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (432)
T 3a9z_A 296 AAD---LV---SENCETYEAHMRDIRDYLEERLE-AEFG----KRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC 364 (432)
T ss_dssp HHH---HH---HHHHHHHHHHHHHHHHHHHHHHH-HHHG----GGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC
T ss_pred HHH---HH---HhhHHHHHHHHHHHHHHHHHHHH-hccC----CcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh
Confidence 432 11 23467888999999999999998 74 4 2221 11 11 23444442 3333 3332
Q ss_pred HhcccEEEcC-------------------C-------C--cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 421 TNKWHVYMTK-------------------D-------G--RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 421 l~~~gI~v~~-------------------g-------g--Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
.+|.+.. | + ||+++.. +++++++++++|+++++++
T Consensus 365 ---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 365 ---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp ---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1333321 1 3 9999865 7999999999999998764
No 151
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-27 Score=241.10 Aligned_cols=323 Identities=13% Similarity=0.125 Sum_probs=223.0
Q ss_pred cHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh---CC
Q 012628 103 LDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FP 176 (459)
Q Consensus 103 ~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~---~~ 176 (459)
++.+.+++.+.+... ....|....|..++++.+++++....|.+..++++++ ++||++++.++.+.+... .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcC
Confidence 466777766665431 1245666678888888888887777776555778999 999999999985444221 14
Q ss_pred C---CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012628 177 G---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK 253 (459)
Q Consensus 177 g---d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~ 253 (459)
| |+|+++.|+|..+...++..|++++.+|+++ +++.+|+++|++++++ +++++++++|+||||.+ .++++
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~---~~~~v~~~~p~nptG~~---~~l~~ 227 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINK---NTVLLVGSAPNFPHGIA---DDIEG 227 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCS---SEEEEEEETTCTTTCCC---CSCTT
T ss_pred CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhh---CCEEEEEECCCCCCCcC---CCHHH
Confidence 5 8999999999999999999999999999853 4688999999999876 78899999999999999 55778
Q ss_pred HHHHHHhcCCeeEEeccCCCCCCC-----CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHH
Q 012628 254 IADVIQEKNHIPFFDVAYQGFASG-----SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328 (459)
Q Consensus 254 i~~l~~~~~~~ii~Deay~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~ 328 (459)
|+++|++||+++|+|++|.++... +.. ..+.+. ....+.++++.|++|.++ .|.++||++ ++++.
T Consensus 228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~-~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~--~~~~~---- 297 (497)
T 3mc6_A 228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK-NLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVIM--YRNSD---- 297 (497)
T ss_dssp TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC-SCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEEE--CSSHH----
T ss_pred HHHHHHHhCCEEEEECcchhhhhhhhhhhccc-CCcccc--ccCCCCcEEEECchhhcC-CCCCceeEE--ecCHH----
Confidence 999999999999999998754210 000 000000 112234688889999864 677899984 44443
Q ss_pred HHHHHHhhcccccc-----CCc---------hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCC
Q 012628 329 VKSQLKRLARPMYS-----NPP---------VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DKS 393 (459)
Q Consensus 329 ~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~ 393 (459)
+... .......+. .+. ..++.++...+.. +.+++..+++.++++++.+.|+ + ++
T Consensus 298 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~--------~~~~~~~~~~~~~~~~l~~~L~-~~~~- 366 (497)
T 3mc6_A 298 LRMH-QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE--------NGYIESCQEIVGAAMKFKKYIQ-ENIP- 366 (497)
T ss_dssp HHTT-TSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HSCT-
T ss_pred HHhh-hhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHH-hcCC-
Confidence 2111 111111110 111 2234444433322 2346778888889999999999 7 32
Q ss_pred CCCcccc-cCCcceeeec--CCCHHH-HHHHHhcccEEEcCCC-----cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 394 GKDWSFI-LRQIGMFSFT--GLNKAQ-SDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 394 ~~~~~~~-~~~~g~f~~~--~l~~~~-~~~ll~~~gI~v~~gg-----Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+++++ .+.++++.|. +.+... .+.|.+ +||.+.+++ |++++..+++++++++++|+++++++
T Consensus 367 --g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 367 --DLDIMGNPRYSVISFSSKTLNIHELSDRLSK-KGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp --TCEECSCCCSSEEEEECTTTTHHHHHHHHHT-TTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHH
T ss_pred --CEEEecCCCeeEEEEeCCCCCHHHHHHHHHh-CCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 14554 4566666664 345444 555555 599887653 99988668999999999999998764
No 152
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=4.7e-26 Score=230.19 Aligned_cols=340 Identities=11% Similarity=0.058 Sum_probs=214.3
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC-cccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
...+|++.|.+...-++. +|.|.+++.+.+.... +... .+..++++.+++.+....+ ..+++|++ |+||+
T Consensus 50 ~~~lD~~~~~~~~~lG~~--~~~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~ggs 120 (449)
T 3a8u_X 50 RKVYDSLSGLWTCGAGHT--RKEIQEAVAKQLSTLD---YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFF--TDSGS 120 (449)
T ss_dssp CEEEETTHHHHTCTTCBS--CHHHHHHHHHHTTTCS---CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEE--ESSHH
T ss_pred CEEEECCccHhhccCCCC--CHHHHHHHHHHHHhCC---CccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--cCcHH
Confidence 457899888753233433 7899999998885421 1111 2223344444444433322 23678999 99999
Q ss_pred hHHHHHHHHHHHhC------CCCEEEEcCCCCcchH-HHhhhCCC------------Ceeeeeeec--CCC-CCCC----
Q 012628 162 GSLRLAAALIERYF------PGAKVLISSPTWGNHK-NIFNDARV------------PWSEYRYYD--PKT-VGLD---- 215 (459)
Q Consensus 162 ~a~~l~~~~~~~~~------~gd~Vlv~~p~y~~~~-~~~~~~G~------------~v~~v~~~~--~~~-~~~d---- 215 (459)
++++++.+++..+. +||+|++.+|+|..+. ..+...|. .+..++... ..+ .++|
T Consensus 121 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~ 200 (449)
T 3a8u_X 121 ECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG 200 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHH
Confidence 99999866553322 6799999999998763 34444331 234444311 111 1356
Q ss_pred ----HHHHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012628 216 ----FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (459)
Q Consensus 216 ----~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~ 289 (459)
++.|++++++.. +++++++++..+||||. +.+++.+++|.++|++||+++|+||+|.+++..+ ....+..
T Consensus 201 ~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g---~~~~~~~- 276 (449)
T 3a8u_X 201 GIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG---SMFGADS- 276 (449)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHHH-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC---cchhhhh-
Confidence 999999997421 25566665545678996 6679999999999999999999999998886432 1122222
Q ss_pred HhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh---------ccccccCCchHHHHHHHHHhCCh
Q 012628 290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL---------ARPMYSNPPVHGARIVANVVGNP 359 (459)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~L~~~ 359 (459)
....++++ ||||.++ +| +|+||+++ +++.+ +.+... ....+.+.+.+++.++...|+..
T Consensus 277 ~~~~~di~---s~sK~l~-~G~~~~G~~~~---~~~~~----~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~ 345 (449)
T 3a8u_X 277 FGVTPDLM---CIAKQVT-NGAIPMGAVIA---STEIY----QTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL 345 (449)
T ss_dssp HTCCCSEE---EECGGGG-TTSSCCEEEEE---EHHHH----HHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEE---EEccccc-CCCCceEEEEE---CHHHH----HHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 22233433 8999999 58 99999866 66744 333332 11223355666666665554311
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCcccccCCcceeeecCCC-----H-----HHHHHHHhcccEEE
Q 012628 360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGLN-----K-----AQSDNMTNKWHVYM 428 (459)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~~l~-----~-----~~~~~ll~~~gI~v 428 (459)
.+ +...++++++++++.+.|+ +++ ++. +....+ .|+|+|+.+. . ++.+.|++ +||.+
T Consensus 346 ------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~l~~-~Gv~v 413 (449)
T 3a8u_X 346 ------QK--ENLVQSVAEVAPHFEKALH-GIKGAKN-VIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGMALWK-AGFYV 413 (449)
T ss_dssp ------HH--TTHHHHHHHHHHHHHHHHH-TTTTSTT-EEEEEE-ETTEEEEEECCBTTBSSHHHHHHHHHHHH-HTEEC
T ss_pred ------Hh--cCHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEee-eEEEEEEEEecCcccccccHHHHHHHHHH-CCcEE
Confidence 11 2456777888888888888 653 211 112233 3556665331 1 45667776 59999
Q ss_pred cCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012628 429 TKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 429 ~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.++| ||++. ..+++++++++++|+++++++
T Consensus 414 ~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 414 RFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp EEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 9875 88854 338999999999999998764
No 153
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.95 E-value=5.5e-26 Score=228.89 Aligned_cols=328 Identities=11% Similarity=0.082 Sum_probs=220.2
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+...+||..|.+....++ .+|.+.+++.+.++.... ..| +.....++++.+++++. .+++++ ++|
T Consensus 75 g~~ylD~~sg~~~~~lgh--~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s 141 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGH--CHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLFN--------YHKVLP--MNT 141 (439)
T ss_dssp CCEEEESSGGGGTTTTCB--TCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred CCEEEEccCCcccccCCC--CCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhcC--------CCEEEE--eCC
Confidence 356889999875222232 378999999998865311 123 34456788888888862 478989 999
Q ss_pred chhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcch-HHHhhhCC------------CCeeeeeeecCCCCCCCHHH
Q 012628 160 GTGSLRLAAALIERY-------FPG-AKVLISSPTWGNH-KNIFNDAR------------VPWSEYRYYDPKTVGLDFEG 218 (459)
Q Consensus 160 gt~a~~l~~~~~~~~-------~~g-d~Vlv~~p~y~~~-~~~~~~~G------------~~v~~v~~~~~~~~~~d~e~ 218 (459)
|+++++++.+++..+ .+| |+|++++|+|.++ ...+...| .+++.+|. .|++.
T Consensus 142 GseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~ 214 (439)
T 2oat_A 142 GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPA 214 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHH
Confidence 999999986665322 357 8999999999765 33444444 35555554 28999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012628 219 MIADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297 (459)
Q Consensus 219 l~~~i~~~~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (459)
+++.++. +++++++++..+|+||. +++++++++|.++|++||+++|+||+|.+++..+. .+.... ....++++
T Consensus 215 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~~-~~~~~Di~ 288 (439)
T 2oat_A 215 LERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDY-ENVRPDIV 288 (439)
T ss_dssp HHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSEE
T ss_pred HHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHHH-hCCCCcEE
Confidence 9999853 36677776666778996 57999999999999999999999999987764321 111111 12223433
Q ss_pred EEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012628 298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 376 (459)
Q Consensus 298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 376 (459)
||||.++ +| +|+||+++ +++ +.+.+.......+.+.+.+++.++...|+.. .+ +...+++
T Consensus 289 ---t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~ 349 (439)
T 2oat_A 289 ---LLGKALS-GGLYPVSAVLC---DDD----IMLTIKPGEHGSTYGGNPLGCRVAIAALEVL------EE--ENLAENA 349 (439)
T ss_dssp ---EECGGGG-TTSSCCEEEEE---CHH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--TTHHHHH
T ss_pred ---Eeccccc-CCCCCeEEEEE---CHH----HHhccCCCCcccCCCcCHHHHHHHHHHHHHH------hh--hhHHHHH
Confidence 9999999 68 99999976 777 3333332222223355666666665544311 11 2456788
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC------CH-HHHHHHHhcccEEEcCCC----cEEEcc-CChhhH
Q 012628 377 KNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSLAKC 444 (459)
Q Consensus 377 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i 444 (459)
+++++++.+.|+ +++.+. +....+. |.|+|+.+ +. ++.+.|++ +||.+.|++ ||+++. .+++++
T Consensus 350 ~~~~~~l~~~L~-~l~~~~-~~~~~~~-g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~~iRi~~~~~~t~e~i 425 (439)
T 2oat_A 350 DKLGIILRNELM-KLPSDV-VTAVRGK-GLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPTHGDIIRFAPPLVIKEDEL 425 (439)
T ss_dssp HHHHHHHHHHHT-TSCTTT-EEEEEEE-TTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBSSSSEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHH-HhcCCC-cEEEEee-eeEEEEEEecCccHHHHHHHHHHHH-CCeEEecCCCCEEEEECccCCCHHHH
Confidence 889999999998 775321 1123333 44555432 23 45667766 599999864 887652 389999
Q ss_pred HHHHHHHHHHHhhc
Q 012628 445 EYLADAIIDSYHNV 458 (459)
Q Consensus 445 ~~~~~~l~~~~~~~ 458 (459)
++++++|+++++++
T Consensus 426 ~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 426 RESIEIINKTILSF 439 (439)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998764
No 154
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=1.4e-26 Score=226.78 Aligned_cols=317 Identities=11% Similarity=0.044 Sum_probs=207.5
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
++++|..|- ..+++.+.+++.+.+.... ...+.+. .-..++++.+++++. .. ++++|++ |+|
T Consensus 4 ~~~~~~p~p-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~-~~~~v~~--~~g 69 (362)
T 3ffr_A 4 NKIYFTPGP-------SELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLE----LP-SNYEVLF--LAS 69 (362)
T ss_dssp CCEEECSSS-------CCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTT----CC-TTEEEEE--ESC
T ss_pred cceeccCCC-------cCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhC----CC-CCcEEEE--eCC
Confidence 356666442 2347888888877765432 1111111 123455566666643 21 2577988 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCc-chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCC
Q 012628 160 GTGSLRLAAALIERYFPGAKVLISSPTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~-~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p 238 (459)
++++++++ +.+...+ +.+++..|.|. .+...++..|++++.++. +.++.+|+++++ ++ ++++++++++|
T Consensus 70 ~t~al~~~--~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~---~~~~~v~~~~~ 139 (362)
T 3ffr_A 70 ATEIWERI--IQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP---ADAEIICLTHN 139 (362)
T ss_dssp HHHHHHHH--HHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC---TTCCEEEEESE
T ss_pred chHHHHHH--HHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc---CCccEEEEEcC
Confidence 99999998 3433556 55556666665 234567788999999998 446789999998 43 37888888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc-cCCCCcceE
Q 012628 239 HNPTGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAM 316 (459)
Q Consensus 239 ~NPTG~~~s~~~l~~i~~l~~~~-~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~ 316 (459)
|||||.+++ +++|+++|++| |+++|+|++|...... . +. . ..++++.|+||.++ ++| +|++
T Consensus 140 ~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~-~--~~-------~--~~d~~~~s~~K~~~~~~G--~g~~ 202 (362)
T 3ffr_A 140 ETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPK-F--DW-------T--KIDSVFFSVQKCFGLPAG--LGVW 202 (362)
T ss_dssp ETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSC-C--CT-------T--SCSEEEEETTSTTCCCSC--CEEE
T ss_pred CCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCcc-c--Ch-------h--HCcEEEEecccccCCCCc--eEEE
Confidence 999999976 67799999999 9999999997654421 1 10 1 14588899999998 788 5777
Q ss_pred EEEeCChhHHHHHHHHHH----------------hhc-cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012628 317 NVVCSSSDLAARVKSQLK----------------RLA-RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 379 (459)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 379 (459)
++ +++.++.+..... ... .....+++..++.++...++. +. .+.+++++++++++
T Consensus 203 ~~---~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~---~~~~~~~~~~~~~~ 274 (362)
T 3ffr_A 203 IL---NDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGD--ML---QISADGIRKQTEEK 274 (362)
T ss_dssp EE---EHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HH---HHCHHHHHHHHHHH
T ss_pred EE---CHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH--HH---HccHHHHHHHHHHH
Confidence 55 7776555544321 000 011224555555444433321 00 12257888999999
Q ss_pred HHHHHHHHhhcc-CCCCCcccccCC----cceeeecCC--CH-HHHHHHHhcccEEEcCC------C--cEEEccC-Chh
Q 012628 380 RQKLFDSLSAKD-KSGKDWSFILRQ----IGMFSFTGL--NK-AQSDNMTNKWHVYMTKD------G--RISLAGL-SLA 442 (459)
Q Consensus 380 ~~~l~~~L~~~~-g~~~~~~~~~~~----~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~-~~e 442 (459)
++++.+.|+ ++ | +++..+. .+.++|+.+ +. ++.+.|.++ ||.+.+| + |||++.. +++
T Consensus 275 ~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e 348 (362)
T 3ffr_A 275 AALINTYIE-SSKV----FSFGVEDAKLRSMTTIVANTTMLPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLE 348 (362)
T ss_dssp HHHHHHHHH-HCSS----EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHH
T ss_pred HHHHHHHHH-HccC----ceeccCChhhcCCceEEEecCCCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHH
Confidence 999999999 87 4 4554421 233444322 34 456666665 9999875 2 9998754 889
Q ss_pred hHHHHHHHHHHHH
Q 012628 443 KCEYLADAIIDSY 455 (459)
Q Consensus 443 ~i~~~~~~l~~~~ 455 (459)
++++++++|++++
T Consensus 349 ~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 349 QVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 155
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.95 E-value=4.2e-27 Score=237.79 Aligned_cols=341 Identities=11% Similarity=0.016 Sum_probs=203.3
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+|+..|.+....++. +|.|.+++.+.++.. ..|.+..+..+.++++++++....+. ..++|++ |+||+
T Consensus 43 g~~ylD~~~~~~~~~lG~~--~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~--~~sGs 114 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHR--KKELDDAIKKQLGKI--AHSTLLGMTNVPATQLAETLIDISPK--KLTRVFY--SDSGA 114 (448)
T ss_dssp SCEEEETTHHHHTCSSCBS--CHHHHHHHHHHHTTC--SCCCCSSSEEHHHHHHHHHHHHHSCT--TEEEEEE--ESSHH
T ss_pred CCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCC--CCCEEEE--eCchH
Confidence 3568999988764444543 799999999988653 22333334445555556555443321 2478999 99999
Q ss_pred hHHHHHHHHHHHhC--C----CCEEEEcCCCCcchHHHhhhCCC-------------CeeeeeeecCCCCCC--------
Q 012628 162 GSLRLAAALIERYF--P----GAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGL-------- 214 (459)
Q Consensus 162 ~a~~l~~~~~~~~~--~----gd~Vlv~~p~y~~~~~~~~~~G~-------------~v~~v~~~~~~~~~~-------- 214 (459)
+|++.+.+++.... + +|+|++++|+|.++.......+. .+..+|. +..+..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 192 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDEC 192 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhh
Confidence 99999976664430 3 49999999999876544333222 2334444 222322
Q ss_pred ---CHHHHHHHHHcCCCCcEEEEeCCCC-CCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012628 215 ---DFEGMIADIKAAPGGSFILLHGCAH-NPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (459)
Q Consensus 215 ---d~e~l~~~i~~~~~~~~~ii~~~p~-NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~ 289 (459)
|+++|++.++..+++++++++.+++ |++| .+++++.+++|.++|++||+++|+||+|.+++..+. ......
T Consensus 193 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a~~~- 268 (448)
T 3dod_A 193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEH- 268 (448)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhhhhh-
Confidence 4888999887322356666666666 8888 556888899999999999999999999998875421 111111
Q ss_pred HhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHh-------hccccccCCchHHHHHHHHHhCChhh
Q 012628 290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR-------LARPMYSNPPVHGARIVANVVGNPAL 361 (459)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~~~ 361 (459)
.+..+++ .+|||.++ .| +|+||+++ +++ +.+.+.. .....+.+.+.+++.++...|+...-
T Consensus 269 ~~~~~di---~t~sK~l~-~G~~~ig~v~~---~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 337 (448)
T 3dod_A 269 ENVQPDL---MAAGKGIT-GGYLPIAVTFA---TED----IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES 337 (448)
T ss_dssp GTCCCSE---EEECGGGG-TTSSCCEEEEE---EHH----HHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCE---EEeccccc-CCcCceEEEEE---CHH----HHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc
Confidence 1222333 37899998 59 59999876 777 4444433 22233345667777777665542100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC--C--------------HHHHHHHHhccc
Q 012628 362 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N--------------KAQSDNMTNKWH 425 (459)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l--~--------------~~~~~~ll~~~g 425 (459)
.+.+++.++..+..++.|.+ +. +++. +....+. |.|+|+.+ + .++.+.+++ +|
T Consensus 338 ----~~~~~~~~~~~~~~~~~l~~-l~-~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 406 (448)
T 3dod_A 338 ----ENIVEQVAEKSKKLHFLLQD-LH-ALPH---VGDIRQL-GFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE-LG 406 (448)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHH-HT-TSTT---EEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TT
T ss_pred ----ccHHHHHHHHHHHHHHHHHH-Hh-cCCC---eEEEEee-eEEEEEEEccCcccccccchhhHHHHHHHHHHHH-CC
Confidence 01123333344444444444 44 3321 2233334 44544422 1 345667776 49
Q ss_pred EEEcCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012628 426 VYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 426 I~v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
|.+.|+| ||+.+ ..+++++++++++|+++++++
T Consensus 407 v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 407 MLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp EECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999976 77533 228999999999999998764
No 156
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=5.1e-27 Score=241.32 Aligned_cols=320 Identities=13% Similarity=0.031 Sum_probs=215.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCce--EEeecccchhHHHHHHHHHHHhCCC----
Q 012628 104 DVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPG---- 177 (459)
Q Consensus 104 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~a~~l~~~~~~~~~~g---- 177 (459)
+.+.+++......+. ..|....+..++++.+++++....|.+.+++++ ++ |+||++++.++.+.+ ..+|
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a~--~~~g~~~~ 188 (514)
T 3mad_A 114 AFLNEVYALQSQSNP-LHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKTY--RDWARATK 188 (514)
T ss_dssp HHHHHHHHHHTTCCT-TCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-cccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHHH--HHHhhhhc
Confidence 444555554443332 455555677788888877777666765555788 78 999999999985444 3344
Q ss_pred ----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012628 178 ----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK 253 (459)
Q Consensus 178 ----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~ 253 (459)
|+|+++.|+|..+...++..|++++.+|++ .++.+|+++|++++++ +++++++++|+||||.+. ++++
T Consensus 189 g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~~---~~~~v~~~~~~nptG~~~---~l~~ 260 (514)
T 3mad_A 189 GITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD--ADYRADVAAMREAITP---NTVVVAGSAPGYPHGVVD---PIPE 260 (514)
T ss_dssp CCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC--TTSCBCHHHHHHHCCT---TEEEEEEETTCTTTCCCC---CHHH
T ss_pred CCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC--CCCCCCHHHHHHHhcc---CCEEEEEeCCCCCCcccc---CHHH
Confidence 899999999999999999999999999994 3788999999999976 788999999999999995 4788
Q ss_pred HHHHHHhcCCeeEEeccCCCCCCC---CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHH
Q 012628 254 IADVIQEKNHIPFFDVAYQGFASG---SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK 330 (459)
Q Consensus 254 i~~l~~~~~~~ii~Deay~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~ 330 (459)
|.++|++||+++|+|++|.++... ........+. ....+.++++.|++|.++ +|.++|++++ +++. +.
T Consensus 261 i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~~--~~~~----~~ 331 (514)
T 3mad_A 261 IAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD--FRLEGVTSVSADTHKYGY-GAKGTSVILY--RRPD----LL 331 (514)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS--TTSTTCCEEEECTTTTTC-CCSSCEEEEE--SSHH----HH
T ss_pred HHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc--ccCCCCcEEEECchhccC-CCCCeEEEEE--eCHH----Hh
Confidence 999999999999999999877531 0000000000 012235788899999965 6788999954 4443 21
Q ss_pred HHHHhhc---------ccc-ccCCchH---HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 012628 331 SQLKRLA---------RPM-YSNPPVH---GARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW 397 (459)
Q Consensus 331 ~~~~~~~---------~~~-~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 397 (459)
....... ... ..+.+.. ++.++...+. .+.+++..+++.++++++.+.|+ +++ ++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~--------~~~~~~~~~~~~~~~~~l~~~L~-~~~---g~ 399 (514)
T 3mad_A 332 HYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG--------EEGYLDATRRILQAADRLKAGVR-AIP---SL 399 (514)
T ss_dssp TTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-TST---TC
T ss_pred ccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHh-hCC---Ce
Confidence 1110000 000 1122222 2233322222 23357788888899999999999 762 15
Q ss_pred ccccCCcceeeec--CCCH-HHHHHHHhcccEEEcCC---C--cEEEccC--ChhhHHHHHHHHHHHHhhc
Q 012628 398 SFILRQIGMFSFT--GLNK-AQSDNMTNKWHVYMTKD---G--RISLAGL--SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 398 ~~~~~~~g~f~~~--~l~~-~~~~~ll~~~gI~v~~g---g--Ris~~~~--~~e~i~~~~~~l~~~~~~~ 458 (459)
++..+..+++.+. +.+. ++.+.|.+ +||.+... + |++++.. +++++++++++|+++++++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~ 469 (514)
T 3mad_A 400 KILGDPLWVIAVASDELNIYQVMEEMAG-RGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV 469 (514)
T ss_dssp EESSCCSSEEEEECSSSCHHHHHHHHHT-TTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred EEeCCCeEEEEEeCCCCCHHHHHHHHHh-cCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666665544442 3444 44556655 59987321 1 8888733 5689999999999998753
No 157
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.95 E-value=1.8e-26 Score=232.10 Aligned_cols=328 Identities=12% Similarity=0.097 Sum_probs=210.1
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+...+||..|.+....++ .+|.+.+++.+.++.... ..| +.....++++.+++++. .++|++ ++|
T Consensus 64 G~~ylD~~~g~~~~~lgh--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s 130 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGH--CHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLG--------YDKVLM--MNT 130 (433)
T ss_dssp CCEEEESSHHHHTTTTCB--TCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred CCEEEEcccchhhcccCC--CCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcC--------CCeEEE--eCC
Confidence 346889998865222232 378999999998865321 123 34455678888888752 478999 999
Q ss_pred chhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcchHH-HhhhCC------------CCeeeeeeecCCCCCCCHHH
Q 012628 160 GTGSLRLAAALIERY-------FPG-AKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEG 218 (459)
Q Consensus 160 gt~a~~l~~~~~~~~-------~~g-d~Vlv~~p~y~~~~~-~~~~~G------------~~v~~v~~~~~~~~~~d~e~ 218 (459)
|++|++++.+++..+ .+| |+|++++|+|..+.. .+...| .+++.+|. .|++.
T Consensus 131 GseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~ 203 (433)
T 1z7d_A 131 GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEA 203 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHH
Confidence 999999986654322 367 999999999987643 333333 23444443 28999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012628 219 MIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297 (459)
Q Consensus 219 l~~~i~~~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (459)
++++++. +++++++++..+|+||.+ ++++++++|.++|++||+++|+||+|.+++..+. ...... .+..++++
T Consensus 204 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~~-~~~~~di~ 277 (433)
T 1z7d_A 204 LEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHH-YNVKPDVI 277 (433)
T ss_dssp HHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSEE
T ss_pred HHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhHh-cCCCCCEE
Confidence 9999952 367777766667889975 7889999999999999999999999987764321 111111 12223433
Q ss_pred EEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012628 298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 376 (459)
Q Consensus 298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 376 (459)
||||.++ +| +|+||+++ +++ +.+.+.......+.+.+.+++.++...|+.. .+ +...+++
T Consensus 278 ---t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~ 338 (433)
T 1z7d_A 278 ---LLGKALS-GGHYPISAVLA---NDD----IMLVIKPGEHGSTYGGNPLAASICVEALNVL------IN--EKLCENA 338 (433)
T ss_dssp ---EECGGGG-TTSSCCEEEEE---CHH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH------HH--TTHHHHH
T ss_pred ---EECcccc-CCCCCeEEEEE---CHH----HHhhhccccccccCCCCHHHHHHHHHHHHHH------Hh--ccHHHHH
Confidence 8999999 89 99999976 777 3333332222233355666666665554311 11 2456677
Q ss_pred HHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCC-----CH-HHHHHHHhcccEEEcCCC----cEEEcc-CChhh
Q 012628 377 KNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSLAK 443 (459)
Q Consensus 377 ~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~ 443 (459)
+++++++.+.|+ ++ +.|. +....+. |.|+|+.+ +. ++.+.|++ +||.+.|++ ||+++. .++++
T Consensus 339 ~~~~~~l~~~L~-~l~~~~~~-~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~iRi~~~~~~t~e~ 414 (433)
T 1z7d_A 339 EKLGGPFLENLK-RELKDSKI-VRDVRGK-GLLCAIEFKNELVNVLDICLKLKE-NGLITRDVHDKTIRLTPPLCITKEQ 414 (433)
T ss_dssp HHHHHHHHHHHH-HHHTTCTT-EEEEEEE-TTEEEEEECTTTCCHHHHHHHHHH-TTEECCEETTTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHHH-HHHHhCCC-eEEEEee-eeEEEEEEccChhHHHHHHHHHHH-CCeEEecCCCCEEEEECCcCCCHHH
Confidence 778888888887 65 4321 1223334 44555432 23 45667766 599999853 887653 38999
Q ss_pred HHHHHHHHHHHHhhc
Q 012628 444 CEYLADAIIDSYHNV 458 (459)
Q Consensus 444 i~~~~~~l~~~~~~~ 458 (459)
+++++++|+++++++
T Consensus 415 i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 415 LDECTEIIVKTVKFF 429 (433)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 158
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.95 E-value=2.6e-26 Score=230.32 Aligned_cols=323 Identities=14% Similarity=0.011 Sum_probs=206.1
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
...+||+.|.+.+..++ .+|.|.+++.+.++......| +..-..++++.+++++. .+++|++ ++||++
T Consensus 52 ~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------~~~~v~~--~~~g~e 119 (424)
T 2e7u_A 52 NRYLDYVMSWGPLILGH--AHPKVLARVRETLERGLTFGA-PSPLEVALAKKVKRAYP-------FVDLVRF--VNSGTE 119 (424)
T ss_dssp CEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHCT-------TCCEEEE--ESSHHH
T ss_pred CEEEEccccccccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHHH
Confidence 46789998875333344 379999999998866422334 33334566666666532 2688999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh-h-------------CCC------CeeeeeeecCCCCCCCHHHHHHH
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D-------------ARV------PWSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-------------~G~------~v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
++.++.++...+.++++|++.+|+|..+...+. . .|+ +++.+|. .|++.+++.
T Consensus 120 a~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~ 192 (424)
T 2e7u_A 120 ATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREV 192 (424)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHH
Confidence 999986654345567899999999987654322 1 122 2333332 389999999
Q ss_pred HHcCCCCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE
Q 012628 223 IKAAPGGSFILLHGCAHNP-TGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (459)
Q Consensus 223 i~~~~~~~~~ii~~~p~NP-TG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (459)
+++.++++++++ ++|+|+ ||.++ +++.+++|.++ ++||+++|+||+|.++..+ ..... ......++++
T Consensus 193 l~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di~--- 262 (424)
T 2e7u_A 193 LKRRGEEIAAII-FEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA----FGGAT-ELLGLKPDLV--- 262 (424)
T ss_dssp HHHHGGGEEEEE-ECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS----TTHHH-HHHTCCCSEE---
T ss_pred HHhCCCCEEEEE-EeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc----hhHHH-HHhCCCcchh---
Confidence 874212455555 466655 89754 79999999999 9999999999999988432 11222 1223334433
Q ss_pred cCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc---cccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012628 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 377 (459)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 377 (459)
||||.++ +|+|+||+++ +++ +.+.+.... ...+.+.+.+++.++...|+.. .+ .++..++++
T Consensus 263 s~sK~l~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~-~~~~~~~~~ 327 (424)
T 2e7u_A 263 TLGKILG-GGLPAAAYAG---RRE----IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL------EE-NPGYYAYLE 327 (424)
T ss_dssp EECGGGG-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH------HH-CTHHHHHHH
T ss_pred hhhhhhh-CCcceEEEEE---cHH----HHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH------Hh-ccHHHHHHH
Confidence 9999999 5999999976 777 333333211 1122255666666665554311 11 134566777
Q ss_pred HHHHHHHHHHhhcc----CCCCCcccccCCcceeeecCCC------------------HHHHHHHHhcccEEEcCCC--c
Q 012628 378 NVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--R 433 (459)
Q Consensus 378 ~~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--R 433 (459)
++++++.+.|+ ++ +. ...+.+. |.|+|+.+. .++.+.|++ +||.+.+++ |
T Consensus 328 ~~~~~l~~~L~-~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~ 401 (424)
T 2e7u_A 328 DLGARLEAGLK-EVLKEKGL---PHTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNFEA 401 (424)
T ss_dssp HHHHHHHHHHH-HHHHHTTC---CCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSSSC
T ss_pred HHHHHHHHHHH-HHHHhCCC---ceEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCCCc
Confidence 77777777776 53 42 1123444 446665432 134556665 699999986 5
Q ss_pred EEEcc-CChhhHHHHHHHHHHHH
Q 012628 434 ISLAG-LSLAKCEYLADAIIDSY 455 (459)
Q Consensus 434 is~~~-~~~e~i~~~~~~l~~~~ 455 (459)
+.+.. .+++++++++++|++++
T Consensus 402 ~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 402 AFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHC
T ss_pred eEeeccCCHHHHHHHHHHHHHhC
Confidence 44332 28999999999998763
No 159
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.95 E-value=6.5e-26 Score=224.88 Aligned_cols=312 Identities=12% Similarity=0.022 Sum_probs=211.7
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (459)
++|+|+. | ..++.+.+++.+.+... .|.+..+..++|+++++++.. +++++ |+||+++
T Consensus 9 ~~i~~~~--p-------~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a 66 (393)
T 1mdo_A 9 DFLPFSR--P-------AMGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAG 66 (393)
T ss_dssp CCBCSCC--C-------CCCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHH
T ss_pred cccccCC--C-------CCCHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhCC--------CcEEE--ecChHHH
Confidence 4677764 3 23677888988888653 244677899999999999743 36778 8999999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012628 164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (459)
Q Consensus 164 ~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT 242 (459)
++++ +... +.+||+|++++|+|..+...++..|++++.+|++ ++++.+|++.+++++++ +++++++ +|||
T Consensus 67 l~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~~---~~~~ 137 (393)
T 1mdo_A 67 MHIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAITP---QTKAIIP---VHYA 137 (393)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEECC---BCGG
T ss_pred HHHH--HHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEecc-CCcCCCCHHHHHHhcCC---CceEEEE---eCCC
Confidence 9998 3333 5699999999999999999999999999999985 34578999999999875 6777775 4699
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeC
Q 012628 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (459)
|.. .++++|.++|+++|+++|+|++|... .+.+ ... .. .++++.||||..+++|.|.||++. .
T Consensus 138 G~~---~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~---~~~------~~--~d~~~~S~~k~K~l~~~~~g~~~~--~ 201 (393)
T 1mdo_A 138 GAP---ADLDAIYALGERYGIPVIEDAAHATGTSYKG---RHI------GA--RGTAIFSFHAIKNITCAEGGIVVT--D 201 (393)
T ss_dssp GCC---CCHHHHHHHHHHHTCCBCEECTTCTTCEETT---EET------TS--SSEEEEECCTTSSSCSSSCEEEEE--S
T ss_pred CCc---CCHHHHHHHHHHcCCeEEEECccccCCeECC---eec------CC--CCeEEEeCCCCCccccccceEEEe--C
Confidence 998 45888999999999999999998853 3321 111 11 578899999443445568999844 4
Q ss_pred ChhHHHHHHHHHHhhcc------------ccc--------cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012628 322 SSDLAARVKSQLKRLAR------------PMY--------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ 381 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (459)
+++..+.+......... ..+ ...+.+.+.++...+ +.+++..++.+++++
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l----------~~~~~~~~~~~~~~~ 271 (393)
T 1mdo_A 202 NPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----------QKLDALNARRAAIAA 271 (393)
T ss_dssp CHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 46755554432111000 000 012333322222222 224556666677888
Q ss_pred HHHHHHhhccCCCCCccccc-C-----CcceeeecCC-------CHHH-HHHHHhcccEEEcCC----------------
Q 012628 382 KLFDSLSAKDKSGKDWSFIL-R-----QIGMFSFTGL-------NKAQ-SDNMTNKWHVYMTKD---------------- 431 (459)
Q Consensus 382 ~l~~~L~~~~g~~~~~~~~~-~-----~~g~f~~~~l-------~~~~-~~~ll~~~gI~v~~g---------------- 431 (459)
++.+.|+ +++ +++.. + .+++++|+.+ +.+. .+.|.+ +||.+.++
T Consensus 272 ~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~ 345 (393)
T 1mdo_A 272 QYHQAMA-DLP----FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPT 345 (393)
T ss_dssp HHHHHHH-TSS----CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTT
T ss_pred HHHHHHh-cCC----cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCc
Confidence 8899998 765 34321 2 3445555533 4444 445554 69988763
Q ss_pred ----------C---cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 432 ----------G---RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 ----------g---Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
. ||++.. .+++++++++++|+++++..
T Consensus 346 ~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 346 LTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp CCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred cCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 1 666653 38999999999999988764
No 160
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=2.8e-26 Score=229.24 Aligned_cols=321 Identities=11% Similarity=0.040 Sum_probs=209.3
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCC----C-C--CCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE----Y-L--PIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~----Y-~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
++++.|..+.+ + +.++.+.+++.+.+....... | . ......++++.+++++.. ++++|++
T Consensus 27 ~~~~yld~~~~----~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~- 93 (416)
T 1qz9_A 27 EGVIYLDGNSL----G--ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA------RDGEVVV- 93 (416)
T ss_dssp TTCEECCTTTS----C--CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC------CTTSEEE-
T ss_pred CCeEeecCCCc----C--CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC------CcccEEE-
Confidence 35677776654 3 347889999998886421111 1 1 124557788888887533 2678999
Q ss_pred ecccchhHHHHHHHHHHHh----CCCCEEE-EcCCCCcchHHHh----hhC--CCCeeeeeeecCCCCCCCHHHHHHHHH
Q 012628 156 QGLSGTGSLRLAAALIERY----FPGAKVL-ISSPTWGNHKNIF----NDA--RVPWSEYRYYDPKTVGLDFEGMIADIK 224 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~----~~gd~Vl-v~~p~y~~~~~~~----~~~--G~~v~~v~~~~~~~~~~d~e~l~~~i~ 224 (459)
|+|++++++++...+..+ .+||+|+ ++.++|+.+...+ +.. |++++.+|+ +++++++++
T Consensus 94 -~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~ 163 (416)
T 1qz9_A 94 -TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAID 163 (416)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCS
T ss_pred -eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhC
Confidence 999999998774443223 8899755 4456777554433 223 888888765 688888886
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012628 225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK 304 (459)
Q Consensus 225 ~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 304 (459)
+ +++++++++|+||||.+++ +++|.++|++||+++|+|++|.. +... . .+..+ +.++++.|+||
T Consensus 164 ~---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~-g~~~--~---~~~~~----~~d~~~~s~~K 227 (416)
T 1qz9_A 164 Q---DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA-GAVP--V---DLHQA----GADYAIGCTYK 227 (416)
T ss_dssp T---TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT-TTSC--C---CHHHH----TCSEEEECSSS
T ss_pred C---CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc-cCcC--C---Chhhc----CCCEEEecCcc
Confidence 5 7889999999999999976 78899999999999999999763 2211 1 12111 24588899999
Q ss_pred CcccCCCCc-ceEEEEeCChhHHHHHHHHHHh-------------------hccccccCCchHHHHHHHHHhCChhhHHH
Q 012628 305 NLGLYAERI-GAMNVVCSSSDLAARVKSQLKR-------------------LARPMYSNPPVHGARIVANVVGNPALFDE 364 (459)
Q Consensus 305 ~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 364 (459)
.++ +|.|+ ||+++ +++..+.+...... .......+++..++.++...|+...
T Consensus 228 ~l~-~g~~~~g~l~~---~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---- 299 (416)
T 1qz9_A 228 YLN-GGPGSQAFVWV---SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA---- 299 (416)
T ss_dssp TTC-CCTTCCCEEEE---CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT----
T ss_pred cCC-CCCCCeEEEEE---CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH----
Confidence 985 67788 99976 66633322211000 0001112344444444333332100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccccCC----cceeeecCCC-H-HHHHHHHhcccEEEcCC--C
Q 012628 365 WKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQ----IGMFSFTGLN-K-AQSDNMTNKWHVYMTKD--G 432 (459)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~~~~~~~~~----~g~f~~~~l~-~-~~~~~ll~~~gI~v~~g--g 432 (459)
.+.+++++++++++++++.+.|+ ++ | +.+..+. .+.++|+.+. . ++.+.|.+ +||.+... +
T Consensus 300 -~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~~~~~~~~ 372 (416)
T 1qz9_A 300 -QTDMASLRRKSLALTDLFIELVE-QRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALID-RGVIGDYREPR 372 (416)
T ss_dssp -TSCHHHHHHHHHHHHHHHHHHHH-HHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHT-TTEECEEETTT
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHH-hhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHh-CCcEeccCCCC
Confidence 01256788899999999999998 75 4 4555553 2345666542 3 44556655 69988653 2
Q ss_pred --cEEEc--cCChhhHHHHHHHHHHHHhh
Q 012628 433 --RISLA--GLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 433 --Ris~~--~~~~e~i~~~~~~l~~~~~~ 457 (459)
||+++ ..+++++++++++|++++++
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 99987 35899999999999998875
No 161
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.95 E-value=7.6e-27 Score=236.03 Aligned_cols=341 Identities=12% Similarity=0.016 Sum_probs=205.6
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+||..|.+....++. +|.|.+++.+.++.. ..|....+..+.+.++++++....+.. ..++|++ |+||+
T Consensus 60 g~~ylD~~~~~~~~~lGh~--~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sGs 132 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGNS--APKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSAL--FNSGS 132 (451)
T ss_dssp SCEEEESSHHHHTCTTCTT--CHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEE--ESSHH
T ss_pred CCEEEEcCCCccccccCCC--CHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEE--eCcHH
Confidence 3568999998764444543 789999999888653 234333344455555555544332211 1468999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCC--------------CCeeeeeeecC--CC-CCC--------CH
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYDP--KT-VGL--------DF 216 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G--------------~~v~~v~~~~~--~~-~~~--------d~ 216 (459)
+|++.+.++......+++|++.+++|.++.......+ ..+..+|+... .. ++. ++
T Consensus 133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (451)
T 3oks_A 133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212 (451)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence 9999997665433456899999999987654433221 14455554200 00 011 35
Q ss_pred HHHHHHHHcC-CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012628 217 EGMIADIKAA-PGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293 (459)
Q Consensus 217 e~l~~~i~~~-~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (459)
+.+++.+++. .+....++++.|.|++| ..++++.+++|.++|++||+++|+||+|.+++..+. .+.... .+..
T Consensus 213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~-~~~~ 288 (451)
T 3oks_A 213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEH-EGID 288 (451)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCC
T ss_pred HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhhh-cCCC
Confidence 5555555431 11334444456666665 344677799999999999999999999998865431 112211 1222
Q ss_pred CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012628 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA 373 (459)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 373 (459)
++++ ||||.++. |+|+||+++ +++ +.+.+.......+.+.+.++|.++...|+... + +...
T Consensus 289 pdi~---t~sK~l~~-G~~iG~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~ 349 (451)
T 3oks_A 289 PDLI---VTAKGIAG-GLPLSAVTG---RAE----IMDSPHVSGLGGTYGGNPIACAAALATIETIE------S--EGLV 349 (451)
T ss_dssp CSEE---EECGGGGT-TSSCEEEEE---EHH----HHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHH
T ss_pred CCee---eehhhhhC-CcceEEEEE---CHH----HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh------h--hhHH
Confidence 3433 89999995 999999866 777 44444333334444677777777766654210 0 1233
Q ss_pred HHHHHHHHHHHHHHhh---ccCCCCCcccccCCcceeeecCC------------CHHHHHHHHhcccEEEcCCC------
Q 012628 374 GRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL------------NKAQSDNMTNKWHVYMTKDG------ 432 (459)
Q Consensus 374 ~~~~~~~~~l~~~L~~---~~g~~~~~~~~~~~~g~f~~~~l------------~~~~~~~ll~~~gI~v~~gg------ 432 (459)
++++++.+++.+.|++ +++. +..+.+.| .|+|+.+ ..++.+.+++ +||.+.|+|
T Consensus 350 ~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~i 424 (451)
T 3oks_A 350 ARAQQIEKIMKDRLGRLQAEDDR---IGDVRGRG-AMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTYGNVV 424 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---EEEEEEET-TEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC---eEEEEEee-EEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCCCCEE
Confidence 4444444444444440 3331 23334444 4544422 1234556666 599998864
Q ss_pred cEEEccC-ChhhHHHHHHHHHHHHhh
Q 012628 433 RISLAGL-SLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 433 Ris~~~~-~~e~i~~~~~~l~~~~~~ 457 (459)
||+++.. +++++++++++|++++++
T Consensus 425 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 425 RFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 7765533 899999999999999875
No 162
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.95 E-value=1.2e-25 Score=228.60 Aligned_cols=345 Identities=9% Similarity=0.017 Sum_probs=224.1
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+|+..|.+....+.. +|.|.+++.+.++... +.+ +..+..+.++++++++....+. ..++|++ ++||+
T Consensus 53 G~~ylD~~s~~~~~~lGh~--~p~v~~A~~~~l~~~~-~~~-~~~~~~~~~~~la~~l~~~~~~--~~~~v~~--~~sGs 124 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYG--RREIVDAMAHQAMVLP-YAS-PWYMATSPAARLAEKIATLTPG--DLNRIFF--TTGGS 124 (476)
T ss_dssp CCEEEETTHHHHTCTTCBC--CHHHHHHHHHHHHHCC-CCC-TTTCBCHHHHHHHHHHHTTSST--TCCEEEE--ESSHH
T ss_pred CCEEEECCCchhhccCCCC--CHHHHHHHHHHHHhcc-Ccc-cCccCCHHHHHHHHHHHhcCCC--CcCEEEE--eCchH
Confidence 4578999998764444543 7899999998886521 222 2245567788888887765532 2568999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCCC-------------eeeeeeecC-CCCCCC------
Q 012628 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDP-KTVGLD------ 215 (459)
Q Consensus 162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~~-------------v~~v~~~~~-~~~~~d------ 215 (459)
+|++.+.+++... ..+++|++.+|+|.++.......+.. +..++.... ..+..|
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 9999997776544 44679999999998876554433322 122222100 001222
Q ss_pred --HHHHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012628 216 --FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT 291 (459)
Q Consensus 216 --~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~ 291 (459)
+++|++.++.. +++++++++++++|++|. +++++.+++|.++|++||+++|+||+|.+++..+ ..+.......
T Consensus 205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G---~~~~~~~~~~ 281 (476)
T 3i5t_A 205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG---EWFASEKVFG 281 (476)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---CceeeecccC
Confidence 78888888642 135678888888899985 8899999999999999999999999999987543 1223321222
Q ss_pred cCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh-------ccccccCCchHHHHHHHHHhCChhhHH
Q 012628 292 RGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL-------ARPMYSNPPVHGARIVANVVGNPALFD 363 (459)
Q Consensus 292 ~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~~~~~~~ 363 (459)
..++++ +|||.++ .| +|+|++++ +++ +.+.+... ....+.+.+.+++.++...|+..
T Consensus 282 v~pdi~---t~sK~l~-~G~~plg~v~~---~~~----i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~---- 346 (476)
T 3i5t_A 282 VVPDII---TFAKGVT-SGYVPLGGLAI---SEA----VLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM---- 346 (476)
T ss_dssp CCCSEE---EECGGGG-TTSSCCEEEEE---CHH----HHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHH----
T ss_pred CCcchh---hhhhhhc-CCCcCeEEEEE---CHH----HHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHH----
Confidence 334443 6899999 59 99999976 888 44444321 12223356667777766555311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--cCC-------------CHHHHHHHHhcccEEE
Q 012628 364 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TGL-------------NKAQSDNMTNKWHVYM 428 (459)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~l-------------~~~~~~~ll~~~gI~v 428 (459)
.+ +...++++++.+++.+.|+ +++.-+.+..+.+.|.++.+ ... ..++.+.+++ +||.+
T Consensus 347 --~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v 420 (476)
T 3i5t_A 347 --ER--EGIVDQAREMADYFAAALA-SLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLIV 420 (476)
T ss_dssp --HH--TTHHHHHHHHHHHHHHHHH-TTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEEC
T ss_pred --Hh--HHHHHHHHHHHHHHHHHHH-HHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHH-CCCEE
Confidence 01 3455666777777777777 65310113344555554332 111 1234556666 59999
Q ss_pred cCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012628 429 TKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 429 ~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
.|.| ||+.. ..+++++++++++|+++++++
T Consensus 421 ~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 421 RPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp EEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9876 77733 239999999999999998753
No 163
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=4e-25 Score=221.23 Aligned_cols=316 Identities=16% Similarity=0.026 Sum_probs=210.0
Q ss_pred cccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcc----cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012628 89 GVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL 164 (459)
Q Consensus 89 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~ 164 (459)
+.|.| ..+++++.+.+++.+.+.......|++..| ..++++.+++++.. + ++++ +.+|++++
T Consensus 5 ~~g~p----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~-------~-~~i~--~~~gt~al 70 (418)
T 2c81_A 5 FDHWP----EWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV-------P-YCVP--TTSGSTAL 70 (418)
T ss_dssp ---CC----CSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC-------S-EEEE--ESCHHHHH
T ss_pred cCCCC----CCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC-------C-cEEE--eCCHHHHH
Confidence 34555 445568999999999886643234777667 67777777777532 2 4555 67789999
Q ss_pred HHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCC
Q 012628 165 RLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG 243 (459)
Q Consensus 165 ~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG 243 (459)
+++ +... +.+||+|+++.|+|..+...++..|++++.+|++ ++++.+|++.+++++++ +++++++ +||||
T Consensus 71 ~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~~---~~~~G 141 (418)
T 2c81_A 71 MLA--LEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-ADTYCIDPQLIKSAITD---KTKAIIP---VHLFG 141 (418)
T ss_dssp HHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHGGGCCT---TEEEECC---BCCTT
T ss_pred HHH--HHHcCCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecC-CCCCCcCHHHHHHhhCC---CCeEEEE---eCCcC
Confidence 998 3333 5699999999999999999999999999999985 34688999999998875 6777774 57999
Q ss_pred CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEe
Q 012628 244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVC 320 (459)
Q Consensus 244 ~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~ 320 (459)
.. .++++|.++|++||+++|+|++|..+. +++ . .+ .... .+.+.|| ||.+++ | |.||++ +
T Consensus 142 ~~---~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~---~--~~----~~~~-~~~~~s~s~~K~~~~-g-~~g~~~--~ 204 (418)
T 2c81_A 142 SM---ANMDEINEIAQEHNLFVIEDCAQSHGSVWNN---Q--RA----GTIG-DIGAFSCQQGKVLTA-G-EGGIIV--T 204 (418)
T ss_dssp CC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETT---E--ET----TSSS-SEEEEECCTTSSSCS-S-SCEEEE--E
T ss_pred Cc---ccHHHHHHHHHHCCCEEEEECcccccCccCC---E--ec----cccc-ceEEEeccCCcccCC-C-CeEEEE--E
Confidence 88 778899999999999999999998775 331 1 11 1111 2666777 999996 8 999984 4
Q ss_pred CChhHHHHHHHHHHhhccc---------cccC----Cc--------hHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 321 SSSDLAARVKSQLKRLARP---------MYSN----PP--------VHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~---------~~~~----~~--------~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
.++++.+.+.......... .+.. +. ...+.+. ...+ +.+++..++.++
T Consensus 205 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~~~~~~~~~~~ 274 (418)
T 2c81_A 205 KNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL----------QELDDKNAIREK 274 (418)
T ss_dssp SCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4567555544322111000 0110 00 0111111 1111 124566677777
Q ss_pred HHHHHHHHHhhccCCCCCcccc-cCCc-ceeee------c------CCCHH-HHHHHHhcccEE---EcCC---------
Q 012628 379 VRQKLFDSLSAKDKSGKDWSFI-LRQI-GMFSF------T------GLNKA-QSDNMTNKWHVY---MTKD--------- 431 (459)
Q Consensus 379 ~~~~l~~~L~~~~g~~~~~~~~-~~~~-g~f~~------~------~l~~~-~~~~ll~~~gI~---v~~g--------- 431 (459)
+++++.+.|. +++ ++++. .+++ +.+.| + +.+.+ +.+.|.+++||. +.++
T Consensus 275 ~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~ 350 (418)
T 2c81_A 275 NAMFLNDALS-KID---GIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPL 350 (418)
T ss_dssp HHHHHHHHHT-TST---TEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTT
T ss_pred HHHHHHHHhc-cCC---CcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCch
Confidence 8888889998 762 14554 3444 22211 2 23444 455666544999 6542
Q ss_pred ---------------------------------C--cEEEc-cC-ChhhHHHHHHHHHHHHhhc
Q 012628 432 ---------------------------------G--RISLA-GL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 ---------------------------------g--Ris~~-~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
+ ||++. .. ++||+++++++|+++++++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 351 FCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred hcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 1 77765 23 7999999999999998765
No 164
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=6.4e-26 Score=223.42 Aligned_cols=314 Identities=12% Similarity=0.058 Sum_probs=211.5
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhH
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (459)
++++|+.|.| . +.+ +.+++.+.+... .|.+..+..++|+++++++.. +++++ ++||+++
T Consensus 7 ~~~~l~~~~~----~---~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a 65 (374)
T 3uwc_A 7 PYSYLERQFA----D---IEP-YLNDLREFIKTA---DFTLGAELEKFEKRFAALHNA--------PHAIG--VGTGTDA 65 (374)
T ss_dssp CSCCHHHHTS----S---CHH-HHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHH
T ss_pred eeeccccCCC----C---chH-HHHHHHHHHHcC---CcccChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHH
Confidence 5678888776 2 245 888888877653 577888999999999999643 35777 8999999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012628 164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (459)
Q Consensus 164 ~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT 242 (459)
++++ +... +.+||+|+++.|+|..+...++..|++++.+|++ +++.+|++.+++++++ ++++++ |+|||
T Consensus 66 ~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~---~~~~v~---~~n~~ 135 (374)
T 3uwc_A 66 LAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITD---KTKAIM---PVHYT 135 (374)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCT---TEEEEC---CBCGG
T ss_pred HHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCC---CceEEE---EeCCc
Confidence 9987 4444 5699999999999999999999999999999984 5688999999998875 677666 89999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEe
Q 012628 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVC 320 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~ 320 (459)
|.+ .++++|.++|++||+++|+|++|..+...+ .... ... .++++.||| |.++.+|. .|++ ++
T Consensus 136 G~~---~~~~~i~~~~~~~~~~li~D~~~~~g~~~~--~~~~------~~~-~d~~~~s~~~~K~l~~~g~-~g~~--~~ 200 (374)
T 3uwc_A 136 GNI---ADMPALAKIAKKHNLHIVEDACQTILGRIN--DKFV------GSW-GQFACFSLHPLKNLNVWSD-AGVI--IT 200 (374)
T ss_dssp GCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEET--TEET------TSS-SSEEEEECSSSSSSCCSSC-CEEE--EE
T ss_pred CCc---CCHHHHHHHHHHcCCEEEEeCCCccCceeC--Ceec------ccc-ccEEEEeCCCCCcCCccce-eEEE--Ee
Confidence 998 468889999999999999999987643211 1111 111 256778866 99986575 7777 45
Q ss_pred CChhHHHHHHHHHHhhcc--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012628 321 SSSDLAARVKSQLKRLAR--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 392 (459)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 392 (459)
.+++..+.+......... ........+.+.+....+ +.+++..++.+++.+++.+.|+ +++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~-~~~ 269 (374)
T 3uwc_A 201 HSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIAHLYDQSFV-DLS 269 (374)
T ss_dssp SCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHHHHHHHHTG-GGT
T ss_pred CCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence 566644443322110000 000011222222221111 1245666777788888888888 764
Q ss_pred CCCC-cccc-cCCcceeee----c-CCCHHH-HHHHHhcccEEEcCCC-------------------------------c
Q 012628 393 SGKD-WSFI-LRQIGMFSF----T-GLNKAQ-SDNMTNKWHVYMTKDG-------------------------------R 433 (459)
Q Consensus 393 ~~~~-~~~~-~~~~g~f~~----~-~l~~~~-~~~ll~~~gI~v~~gg-------------------------------R 433 (459)
+ +.+. .+.++...| + ..+.+. .+.|.+ +||.+.++. |
T Consensus 270 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 345 (374)
T 3uwc_A 270 ---EFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVIT 345 (374)
T ss_dssp ---TTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEE
T ss_pred ---CeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHH-CCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEE
Confidence 1 2222 122222222 1 124444 445554 699887751 5
Q ss_pred EEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 434 ISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 434 is~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
|++.. .+++++++++++|++++++.
T Consensus 346 l~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 346 LPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 65553 38999999999999998763
No 165
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.94 E-value=3e-26 Score=232.64 Aligned_cols=346 Identities=10% Similarity=-0.003 Sum_probs=215.8
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...+||..|......+.. +|.|.+++.+.++... +.|....+..+.+..+++.+....+ ...++|++ ++||+
T Consensus 54 G~~ylD~~s~~~~~~lGh~--~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~--~~sGs 126 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGYG--RDELAEVAARQMRELP-YYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFF--AGGGS 126 (472)
T ss_dssp CCEEECTTHHHHTCTTCBC--CHHHHHHHHHHHHHCS-CCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred CCEEEECCCchhhccCCCC--CHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCCHH
Confidence 4578999988664444543 7899999998886532 2333333333444444444433222 12568999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHhhhCCC------------Ceeeeeeec--C-CCCCCC-----
Q 012628 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYD--P-KTVGLD----- 215 (459)
Q Consensus 162 ~a~~l~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~G~------------~v~~v~~~~--~-~~~~~d----- 215 (459)
++++.+.+++... .++++|++.+|+|.++.......+. .+..+|... . .++ .|
T Consensus 127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~ 205 (472)
T 3hmu_A 127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFG 205 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHH
Confidence 9999997776543 2468999999999877554443332 233444310 0 111 34
Q ss_pred ---HHHHHHHHHcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH
Q 012628 216 ---FEGMIADIKAA-PGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA 290 (459)
Q Consensus 216 ---~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~ 290 (459)
++.|++.+++. +++++++++.+++|++|.+. +++.+++|.++|++||+++|+||+|.+++..+ ..+.... .
T Consensus 206 ~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G---~~~a~~~-~ 281 (472)
T 3hmu_A 206 LARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG---NWFGTQT-M 281 (472)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHH-H
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccC---ccchhHH-h
Confidence 78888888632 13567777777788888755 88889999999999999999999999987543 1223322 2
Q ss_pred hcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012628 291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 370 (459)
Q Consensus 291 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 370 (459)
+..++++ +|||.++..|+|+||+++ +++.++.+ .. .......+.+.+.+++.++...|+.. ++ +
T Consensus 282 ~v~pdi~---t~sK~l~gg~~plG~v~~---~~~i~~~~-~~-~~~~~~~t~~~np~a~aAa~aaL~~~------~~--~ 345 (472)
T 3hmu_A 282 GIRPHIM---TIAKGLSSGYAPIGGSIV---CDEVAHVI-GK-DEFNHGYTYSGHPVAAAVALENLRIL------EE--E 345 (472)
T ss_dssp TCCCSEE---EECGGGTTTSSCCEEEEE---EHHHHHHH-TT-SCBCCCCTTTTCHHHHHHHHHHHHHH------HH--T
T ss_pred CCCCcee---eechhhhcCCcceEEEEE---CHHHHHhc-cc-CCccccCCCCCCHHHHHHHHHHHHHH------HH--h
Confidence 3334444 689999855599999976 77744433 10 11122223356667777776555311 00 2
Q ss_pred HHHHHHH-HHHHHHHHHHhhccC-CCCCcccccCCcceeeec--CC--------------CHHHHHHHHhcccEEEcCCC
Q 012628 371 MMAGRIK-NVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFT--GL--------------NKAQSDNMTNKWHVYMTKDG 432 (459)
Q Consensus 371 ~~~~~~~-~~~~~l~~~L~~~~g-~~~~~~~~~~~~g~f~~~--~l--------------~~~~~~~ll~~~gI~v~~gg 432 (459)
...++++ ++.+++.+.|+ ++. .| .+..+.+.|.++.+. .. ..++.+.|++ +||.+.++|
T Consensus 346 ~~~~~~~~~~~~~l~~~L~-~l~~~~-~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g 422 (472)
T 3hmu_A 346 NILDHVRNVAAPYLKEKWE-ALTDHP-LVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG 422 (472)
T ss_dssp THHHHHHHTHHHHHHHHHH-GGGGST-TEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCC-CeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC
Confidence 3445555 56666666665 542 11 133445555544331 11 1234566666 599999876
Q ss_pred ---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012628 433 ---RISLA-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 ---Ris~~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
||+.. ..+++++++++++|+++++++
T Consensus 423 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 423 DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 77732 239999999999999988753
No 166
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.94 E-value=3.6e-26 Score=230.96 Aligned_cols=340 Identities=11% Similarity=0.000 Sum_probs=217.8
Q ss_pred CCceeecccccCCCCCCccCcHHHH-H-HHHH---HhhcCCC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEe
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVK-K-AENL---MLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~-~-a~~~---~~~~~~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (459)
...+|+..|.+...-++. +|.|. + ++.+ .+..... ..| +.....++++.+++++.. ..+++|++
T Consensus 54 ~~ylD~~~~~~~~~lG~~--~p~v~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~la~~la~~~~~-----~~~~~v~~- 124 (449)
T 2cjg_A 54 RRYLDMFTFVASSALGMN--PPALVDDREFHAELMQAALNKPSNSDV-YSVAMARFVETFARVLGD-----PALPHLFF- 124 (449)
T ss_dssp CEEEESSHHHHTCSSCBS--CHHHHTCHHHHHHHHHHHTCCCCTTTC-CCHHHHHHHHHHHHHHCC-----TTCCEEEE-
T ss_pred cEEEEccCCccccCCCCC--CHHHHHHHHHHHHHHHHHhcCCCCccc-CCHHHHHHHHHHHHhcCC-----CCCCEEEE-
Confidence 467899888763333432 78898 8 8888 6654311 123 334456788888887641 22688999
Q ss_pred ecccchhHHHHHHHHHHHhC------------CCCEEEEcCCCCcchHHHhh-hCC--------C-----CeeeeeeecC
Q 012628 156 QGLSGTGSLRLAAALIERYF------------PGAKVLISSPTWGNHKNIFN-DAR--------V-----PWSEYRYYDP 209 (459)
Q Consensus 156 ~t~ggt~a~~l~~~~~~~~~------------~gd~Vlv~~p~y~~~~~~~~-~~G--------~-----~v~~v~~~~~ 209 (459)
++||++|++.+.+++..+. +||+|++.+|+|.++..... ..| . +++.+|..++
T Consensus 125 -~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 125 -VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp -ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred -eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 9999999999976553322 28999999999987644322 222 1 4555665320
Q ss_pred CCC--------CCCHHHHHHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012628 210 KTV--------GLDFEGMIADIKAAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD 280 (459)
Q Consensus 210 ~~~--------~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~ 280 (459)
... ..+++.|++.+++..+++++++++.++|||| .+++++.+++|.++|++||+++|+||+|.+++..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~- 282 (449)
T 2cjg_A 204 GLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT- 282 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-
T ss_pred hhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-
Confidence 011 2456678888874334677877766689999 599999999999999999999999999998875431
Q ss_pred CChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHH-HHHhhccccccCCchHHHHHHHHHhCCh
Q 012628 281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS-QLKRLARPMYSNPPVHGARIVANVVGNP 359 (459)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 359 (459)
.+.... .+..++++ ||||.+ |+||+++ ++++++.+.. .+.......+.+.+.+++.++...|+..
T Consensus 283 --~~~~~~-~~~~~di~---t~sK~l-----~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~ 348 (449)
T 2cjg_A 283 --AWAYQQ-LDVAPDIV---AFGKKT-----QVCGVMA---GRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI 348 (449)
T ss_dssp --SSTHHH-HTCCCSEE---EECGGG-----SSEEEEE---CGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH
T ss_pred --ceeecc-cCCCceEE---EecCcc-----cEEEEEE---CHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence 122222 23334433 789987 6999966 6673332110 0111122223356677777776555311
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCCC-----HHHHHHHHhcccEEEcCCC
Q 012628 360 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKDG 432 (459)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~gg 432 (459)
.+ +...++++++++++.+.|+ ++ ++|..+....+.|.++ ++.+. .++++.|++ +||.+.++|
T Consensus 349 ------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g 417 (449)
T 2cjg_A 349 ------EA--EGLFERAVQHGKYLRARLD-ELAADFPAVVLDPRGRGLMC-AFSLPTTADRDELIRQLWQ-RAVIVLPAG 417 (449)
T ss_dssp ------HH--HTHHHHHHHHHHHHHHHHH-HHHHHSTTTSEEEEEETTEE-EEECSSHHHHHHHHHHHHH-TTEECEEET
T ss_pred ------Hh--ccHHHHHHHHHHHHHHHHH-HHHhhCCCceeeEeeccEEE-EEEECChHHHHHHHHHHHH-CCeEEecCC
Confidence 11 2455677778888888887 64 2211123344555544 44542 345667776 699999875
Q ss_pred ----cEEEcc-CChhhHHHHHHHHHHHHhhc
Q 012628 433 ----RISLAG-LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 ----Ris~~~-~~~e~i~~~~~~l~~~~~~~ 458 (459)
||+++. .+++++++++++|+++++++
T Consensus 418 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 418 ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 886543 28999999999999998875
No 167
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.94 E-value=5.5e-26 Score=225.45 Aligned_cols=311 Identities=14% Similarity=0.022 Sum_probs=205.5
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+++++++.|.| .+++.+.+++.+.+..+ .|. +..+..++|+++++++.. +++++ ++||+
T Consensus 22 ~~~~~l~~~~p-------~~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~~gt 81 (391)
T 3dr4_A 22 SDLPRISVAAP-------RLDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCGV--------KHAIA--CNNGT 81 (391)
T ss_dssp ------CCCCC-------CCCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHTC--------SEEEE--ESSHH
T ss_pred CCCceeccCCC-------CCCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHH
Confidence 46788888876 23678888888887653 455 678999999999999743 35677 89999
Q ss_pred hHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 162 GSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 162 ~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++.++ +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++++++ ++++++ ++|
T Consensus 82 ~al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~---~~~~v~---~~n 152 (391)
T 3dr4_A 82 TALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-PRTFNLDAAKLEALITP---RTKAIM---PVH 152 (391)
T ss_dssp HHHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGSGGGCCT---TEEEEC---CBC
T ss_pred HHHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecC-ccccCcCHHHHHHhcCC---CceEEE---EEC
Confidence 999998 4444 5799999999999999999999999999999985 35688999999998875 677776 578
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEE
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMN 317 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~ 317 (459)
|||.. .++++|.++|++||+++|+|++|.... +.+ . . .... ..+.+.||| |.++ |.+.|++
T Consensus 153 ~tG~~---~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~---~----~~~~-~di~~~S~s~~K~l~--~g~gg~~- 216 (391)
T 3dr4_A 153 LYGQI---CDMDPILEVARRHNLLVIEDAAEAVGATYRG--K---K----SGSL-GDCATFSFFGNAIIT--TGEGGMI- 216 (391)
T ss_dssp GGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETT--E---E----TTSS-SSEEEEECBTTSSSC--CBSCEEE-
T ss_pred CCCCh---hhHHHHHHHHHHcCCEEEEECcccccceECC--e---e----eccc-CCEEEEECCCCCcCC--cCCeEEE-
Confidence 99998 668889999999999999999987533 211 0 0 0111 136667766 6664 4568887
Q ss_pred EEeCChhHHHHHHHHHHhhcc----------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 318 VVCSSSDLAARVKSQLKRLAR----------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL 387 (459)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 387 (459)
++.+++..+.+......... ........+.+.+.... .+.+++..++.+++.+++.+.|
T Consensus 217 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~----------~~~~~~~~~~~~~~~~~l~~~L 285 (391)
T 3dr4_A 217 -TTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ----------LERVDEHLAARERVVGWYEQKL 285 (391)
T ss_dssp -EESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH----------HHTHHHHHHHHHHHHHHHHHHH
T ss_pred -EECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 45666644444332211000 00012222222221111 1224566777788888999999
Q ss_pred hhccCCCCCcccccC------Cccee-eec------CCCHHH-HHHHHhcccEEEcCCC---------------------
Q 012628 388 SAKDKSGKDWSFILR------QIGMF-SFT------GLNKAQ-SDNMTNKWHVYMTKDG--------------------- 432 (459)
Q Consensus 388 ~~~~g~~~~~~~~~~------~~g~f-~~~------~l~~~~-~~~ll~~~gI~v~~gg--------------------- 432 (459)
+ ++| +.+..+ ..+++ +++ +.+.+. .+.|.+ +||.+.++.
T Consensus 286 ~-~~g----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~ 359 (391)
T 3dr4_A 286 A-RLG----NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHLATDDLKIAE 359 (391)
T ss_dssp G-GGT----TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGGCCTTCHHHH
T ss_pred h-cCC----ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHH-CCCceeecCCccccChhhhhcCcCCChHHH
Confidence 8 775 343333 12221 122 234544 555555 699887661
Q ss_pred -------cEEEcc-CChhhHHHHHHHHHHHH
Q 012628 433 -------RISLAG-LSLAKCEYLADAIIDSY 455 (459)
Q Consensus 433 -------Ris~~~-~~~e~i~~~~~~l~~~~ 455 (459)
||++.. .++||+++++++|++++
T Consensus 360 ~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 360 ACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 565543 48999999999998764
No 168
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.94 E-value=1.9e-26 Score=233.03 Aligned_cols=314 Identities=13% Similarity=0.093 Sum_probs=197.6
Q ss_pred Cceeeccc-ccCCCCCCccCcHHHHHHHHHH---hhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 84 KKLNLGVG-AYRTEELQPYVLDVVKKAENLM---LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 84 ~~i~l~~g-~~~~~~~~~~~~~~v~~a~~~~---~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
++|+|+.| .+ .++. ++.|.++.... ......+.|+ ..|.+ +++++++++...+|. +++++ +.+
T Consensus 90 ~~i~l~~g~~~----~~~~-~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~--~~s 156 (464)
T 1ibj_A 90 LLVNLDNKFDP----FDAM-STPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFC--FTS 156 (464)
T ss_dssp HHTCCCCSSCT----TCCS-SCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEE--ESS
T ss_pred eEEECCCCCCC----CCCC-CccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEE--ECC
Confidence 57888887 44 2222 44455544432 1112235675 34544 556666555444342 36666 788
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
|+++++++. ..+.+||+|++++|+|..+... ++..|++++.+|.. |++++++++++ +++++++
T Consensus 157 Gt~al~~~l---~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~---~tk~v~l 223 (464)
T 1ibj_A 157 GMAALSAVT---HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGP---QTKLVWL 223 (464)
T ss_dssp HHHHHHHHH---TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCS---SEEEEEE
T ss_pred HHHHHHHHH---HHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhcc---CceEEEE
Confidence 899988762 3467999999999999988754 46779999988762 88999999875 7899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc-CCCCcc
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIG 314 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG 314 (459)
++|+||||.++ ++++|+++|++||+++|+||+|...... . .+ . .+.++++.|+||.++. +|+|+|
T Consensus 224 ~~p~NptG~v~---~l~~i~~la~~~gi~livDea~~~g~~~----~--~~----~-~~~div~~S~sK~~~g~~Gl~~G 289 (464)
T 1ibj_A 224 ESPTNPRQQIS---DIRKISEMAHAQGALVLVDNSIMSPVLS----R--PL----E-LGADIVMHSATKFIAGHSDVMAG 289 (464)
T ss_dssp CSSCTTTCCCC---CHHHHHHHHHTTTCEEEEECTTTCTTTC----C--GG----G-TTCSEEEEETTTTTTCSSCCCCE
T ss_pred eCCCCCCCEee---cHHHHHHHHHHcCCEEEEECCCcccccC----C--hh----h-cCCEEEEECCcccccCCCCCcEE
Confidence 99999999997 4888999999999999999998653211 0 11 1 3578999999998864 489999
Q ss_pred eEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH----------
Q 012628 315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF---------- 384 (459)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------- 384 (459)
|+++ .++++.+.+... ......+.+.+++.++...|++.... +++..+......+++.
T Consensus 290 ~l~~--~~~~l~~~l~~~----~~~~g~~~~~~~~~a~~~al~~~~~r------~~~~~~~~~~l~~~l~~~~~v~~~~~ 357 (464)
T 1ibj_A 290 VLAV--KGEKLAKEVYFL----QNSEGSGLAPFDCWLCLRGIKTMALR------IEKQQENARKIAMYLSSHPRVKKVYY 357 (464)
T ss_dssp EEEE--CSHHHHHHHHHH----HHHTTCBCCHHHHHHHHHHHTTHHHH------HHHHHHHHHHHHHHHHTCTTCCEEEC
T ss_pred EEEE--ChHHHHHHHHHH----HHhcCCCCCHHHHHHHHhchhhHHHH------HHHHHHHHHHHHHHHHhCCCceEEEC
Confidence 9965 335644444332 21122245666777776667653221 1222222222222222
Q ss_pred HHHhhccCCCCCcccccCC----cceeeecCCC-H----HHHHHHHhcccEEEcCC------------------------
Q 012628 385 DSLSAKDKSGKDWSFILRQ----IGMFSFTGLN-K----AQSDNMTNKWHVYMTKD------------------------ 431 (459)
Q Consensus 385 ~~L~~~~g~~~~~~~~~~~----~g~f~~~~l~-~----~~~~~ll~~~gI~v~~g------------------------ 431 (459)
+.|+ ++ | ++++..++ ++++ ++.+. . .+++.| +.+||.+.+|
T Consensus 358 ~~L~-~~--p-~~~~~~~~~~g~g~~~-~~~l~~~~~~~~~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~ 431 (464)
T 1ibj_A 358 AGLP-DH--P-GHHLHFSQAKGAGSVF-SFITGSVALSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREA 431 (464)
T ss_dssp TTST-TS--T-THHHHTTTCSCCCSEE-EEECSCHHHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSS
T ss_pred CCCC-CC--c-chHHHhccCCCCceEE-EEEECCHHHHHHHHHhc-CcceEeecCCCCceeeecccccccccCCHHHHHh
Confidence 2222 22 1 14444443 3444 33342 2 233343 3357766543
Q ss_pred -----C--cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 432 -----G--RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 432 -----g--Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+ |||++. |++++++++|+++++++
T Consensus 432 ~g~~~~~iRlsvg~---edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 432 RGLTEDLVRISAGI---EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp SSCCTTCEEEECCS---SCHHHHHHHHHHHHHSC
T ss_pred cCCCcCeEEEEeCC---CCHHHHHHHHHHHHhhc
Confidence 2 899875 89999999999998764
No 169
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=7.2e-26 Score=229.95 Aligned_cols=337 Identities=11% Similarity=0.072 Sum_probs=210.6
Q ss_pred CCCceeecccc-cCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 82 DEKKLNLGVGA-YRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 82 ~~~~i~l~~g~-~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
+.+++++..|. |+|.....++ +.|.+++.+.+..+. ..|.+..+..+||+++++++.. +++++ |+||
T Consensus 31 g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~~g 98 (467)
T 2oqx_A 31 GMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFGY--------QYTIP--THQG 98 (467)
T ss_dssp TSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--EC--
T ss_pred CCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhCc--------CcEEE--cCCc
Confidence 45678888875 3343322222 778888888775543 5788888999999999999732 57888 9999
Q ss_pred hhHHHHHHHHHHHhCC-----C----CEEEEcCCCCcchHHHhhhCCCCeeeeee----ecC----CCCCCCHHHHHHHH
Q 012628 161 TGSLRLAAALIERYFP-----G----AKVLISSPTWGNHKNIFNDARVPWSEYRY----YDP----KTVGLDFEGMIADI 223 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~-----g----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~----~~~----~~~~~d~e~l~~~i 223 (459)
++|++++.+.+ ..+ | |+|++..+.|..+.......|+.++.... ... .++.+|+++|++++
T Consensus 99 t~A~~~al~~~--~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i 176 (467)
T 2oqx_A 99 RGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176 (467)
T ss_dssp CCSHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHH--hccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHH
Confidence 99999985444 456 7 99888755545555666666666544321 001 34568999999999
Q ss_pred HcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHHh
Q 012628 224 KAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFAT 291 (459)
Q Consensus 224 ~~~~-~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~----------~~~~~~~~~~~~~~~~~~ 291 (459)
++.. ++++++++++||||| |.+++.+++++|+++|++||+++|+|+++.. ..+.+. + ...+..
T Consensus 177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~---~~~~~~ 251 (467)
T 2oqx_A 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--T---IEQITR 251 (467)
T ss_dssp HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--C---HHHHHH
T ss_pred HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--c---HHHHhh
Confidence 8421 257788889999998 9999999999999999999999999955321 122211 1 112210
Q ss_pred ---cCCeEEEEEcCCcCcccC-CCCcceEEEEeCCh---hHHHHHHHHHHhhcc-ccccCCchHHHHHHHHHhCChhhHH
Q 012628 292 ---RGMELLVAQSYSKNLGLY-AERIGAMNVVCSSS---DLAARVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFD 363 (459)
Q Consensus 292 ---~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~ 363 (459)
...+ +++.|+||.++++ | ||+++ .++ +....+......... ..+...+..+..+....+.
T Consensus 252 ~~~~~~d-~~~~s~sK~~g~~~G---g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~------ 319 (467)
T 2oqx_A 252 ETYKYAD-MLAMSAKKDAMVPMG---GLLCM--KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------ 319 (467)
T ss_dssp HHGGGCS-EEEEESSSTTCCSSC---EEEEE--CSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH------
T ss_pred hhhccCC-eEEEecccccCCCCc---eEEEe--cChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH------
Confidence 1122 4578999999876 3 55533 333 222332222111100 0111122222111111111
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeecCC-------CH-H-----HHHHHHhcccEEEc
Q 012628 364 EWKAEM-EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NK-A-----QSDNMTNKWHVYMT 429 (459)
Q Consensus 364 ~~~~~~-~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~~l-------~~-~-----~~~~ll~~~gI~v~ 429 (459)
+.+ +...++..++++++.+.|+ ++| +.+. +.+++++|+.+ +. + +++.|++++||.+.
T Consensus 320 ---~~~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~ 390 (467)
T 2oqx_A 320 ---DGMNLDWLAYRIAQVQYLVDGLE-EIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAV 390 (467)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHHH-HTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECE
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHH-HCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceec
Confidence 011 1233445678889999998 765 4666 66777777643 21 1 25666466799987
Q ss_pred C-C------------------C--cEEEcc--CChhhHHHHHHHHHHHHhhc
Q 012628 430 K-D------------------G--RISLAG--LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 430 ~-g------------------g--Ris~~~--~~~e~i~~~~~~l~~~~~~~ 458 (459)
| + + ||+++. .+++++++++++|+++++++
T Consensus 391 ~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 391 EIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp EESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred ccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 6 2 3 888873 48999999999999988753
No 170
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.94 E-value=2.9e-25 Score=221.90 Aligned_cols=324 Identities=16% Similarity=0.150 Sum_probs=197.2
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHHH----HHHHHHhcCCCCccccCceE
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNK----VTAELLFGADNSVLKEQRVA 153 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr~----aia~~l~~~~~~~~~~~~i~ 153 (459)
+.++|..+.. + +++.|.+++.+.+.......|+ ......++++ .+++++.. ++++|+
T Consensus 26 ~~i~l~~~~~------~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~ 92 (417)
T 3n0l_A 26 EGLEMIASEN------F-TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC------KFANVQ 92 (417)
T ss_dssp HSEECCTTCC------C-CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC------SEEECC
T ss_pred cCeeeecccC------C-CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC------CCcceE
Confidence 4677765442 2 3889999998877432222332 2233344444 55666432 256677
Q ss_pred EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCc
Q 012628 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS 230 (459)
Q Consensus 154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 230 (459)
+ ++| ++++.++. ...+.+||+|++++|+|..+.. .+...|..+..+++..++++.+|++++++++++ +++
T Consensus 93 ~--~sG-t~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~--~~~ 165 (417)
T 3n0l_A 93 P--NSG-SQANQGVY--AALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK--EKP 165 (417)
T ss_dssp C--SSH-HHHHHHHH--HHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH--HCC
T ss_pred e--ccH-HHHHHHHH--HHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh--cCC
Confidence 7 666 89999984 4447899999999999987654 334444444444432245678999999999983 156
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012628 231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY 309 (459)
Q Consensus 231 ~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 309 (459)
+++++++|+| |.+++ +++|.++|++||+++|+||+|. ++.+.+.. ... . ...++++.||||.+ +
T Consensus 166 ~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~~~----~--~~~di~~~s~sK~l--~ 230 (417)
T 3n0l_A 166 KLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEH--PSP----F--PYAHVVSSTTHKTL--R 230 (417)
T ss_dssp SEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCC----T--TTCSEEEEESSTTT--C
T ss_pred eEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccC--CCc----c--ccceEEEeeCcccc--C
Confidence 6777777776 77765 7889999999999999999943 22221100 000 0 12468899999987 6
Q ss_pred CCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012628 310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 389 (459)
Q Consensus 310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 389 (459)
|+|.||+++ +++++.+.+...... ....+++...+.++...+.. .+.+++++.++++.++++++.+.|+
T Consensus 231 g~~~G~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~aa~~~a~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~- 299 (417)
T 3n0l_A 231 GPRGGIIMT--NDEELAKKINSAIFP---GIQGGPLMHVIAAKAVGFKF-----NLSDEWKVYAKQVRTNAQVLANVLM- 299 (417)
T ss_dssp SCSCEEEEE--SCHHHHHHHHHHHTT---TTCSSCCHHHHHHHHHHHHH-----HTSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCeeEEEE--CCHHHHHHHhhhhCC---cccCCcHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 889999854 436744444332211 12223333332232222211 0123356788888899999999999
Q ss_pred ccCCCCCccccc-CCcceeeecC-----CCHHHHHHHHhcccEEEcCC-------------C-cEEEcc-----CChhhH
Q 012628 390 KDKSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMTKD-------------G-RISLAG-----LSLAKC 444 (459)
Q Consensus 390 ~~g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~g-------------g-Ris~~~-----~~~e~i 444 (459)
+.| +.+.. ...+.++|+. ++.+.+.++++++||.+.++ + |+++.. .+++++
T Consensus 300 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i 375 (417)
T 3n0l_A 300 DRK----FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEM 375 (417)
T ss_dssp HTT----CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred hCC----ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHH
Confidence 766 45443 2334455553 35667777777789998743 1 776542 367999
Q ss_pred HHHHHHHHHHHhh
Q 012628 445 EYLADAIIDSYHN 457 (459)
Q Consensus 445 ~~~~~~l~~~~~~ 457 (459)
++++++|++++++
T Consensus 376 ~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 376 EIVSNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
No 171
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.94 E-value=3.8e-26 Score=223.66 Aligned_cols=287 Identities=10% Similarity=-0.029 Sum_probs=185.5
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCC--EEEEcCCCCcchHH---Hh
Q 012628 120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--KVLISSPTWGNHKN---IF 194 (459)
Q Consensus 120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd--~Vlv~~p~y~~~~~---~~ 194 (459)
..|++..+..+|++++++++.. +.. ++ +++|++++.++. ...+.+|| .|+++.++|..+.. ..
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~~-------~~~-i~--~~~G~~a~~~al--~~~~~~gd~~~vi~~~~~~~~~~~~~~~~ 108 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLGM-------DDA-VF--FPSGTMAQQVAL--RIWSDETDNRTVAYHPLCHLEIHEQDGLK 108 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHTC-------SEE-EE--ESCHHHHHHHHH--HHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred ccccCChHHHHHHHHHHHHhCC-------CcE-EE--ecCcHHHHHHHH--HHHhhcCCCcEEEecccceeeeeccchhh
Confidence 5687778899999999999743 233 44 577888988873 33356777 67776666443322 34
Q ss_pred hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012628 195 NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG 273 (459)
Q Consensus 195 ~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT-G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~ 273 (459)
...|++++.+|. +++.+|+++++++ . +++++++++||||| |.+++.+++++|+++|++||+++|+|++|..
T Consensus 109 ~~~g~~~~~v~~---~~~~~d~~~l~~~--~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 180 (357)
T 3lws_A 109 ELHPIETILVGA---ADRLMTLDEIKAL--P---DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF 180 (357)
T ss_dssp HHSSCEEEECSC---TTSCCCHHHHHTC--C---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred hccCcEEEEecC---CCCCcCHHHHhcC--c---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence 566888888874 3467999999876 2 36788889999998 9999999999999999999999999999761
Q ss_pred --CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCc-ccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHH
Q 012628 274 --FASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGAR 350 (459)
Q Consensus 274 --~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (459)
..+.+ . ....+.... .+++.||||.+ ++.| ||+++ +++.++.+........ . ........+.
T Consensus 181 ~~~~~~~--~---~~~~~~~~~--d~~~~s~sK~~~~~~g---g~~~~---~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 245 (357)
T 3lws_A 181 EMLPYYE--K---TAAEIAGLF--DSIYISFYKGLGGIAG---AILAG---PAAFCQTARIWKRRYG-G-DLISLYPYIV 245 (357)
T ss_dssp HHHHHHT--C---CHHHHHTTS--SEEEEESSSTTCCSSC---EEEEE---CHHHHHHHHHHHHHTT-C-CCSCCHHHHH
T ss_pred hhhhhcC--C---ChHHHHhcC--CEEEEeccccCCCCce---EEEEc---CHHHHHHHHHHHHHhc-C-CcccchHHHH
Confidence 11111 1 122222222 24478999999 5443 88765 8886555543222211 1 1112222223
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc-ccCCcceeeecCC--C----HHHHHHHHhc
Q 012628 351 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL--N----KAQSDNMTNK 423 (459)
Q Consensus 351 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~g~f~~~~l--~----~~~~~~ll~~ 423 (459)
++...|++ | .++ .+++.++++++.+.|+ +++ ++++ ..+.+++|+|+.+ . .+.+.+.+.+
T Consensus 246 ~~~~~l~~------~---~~~-~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (357)
T 3lws_A 246 SADYYYEL------R---KDR-MGQYYEQAKQLAEQFN-ALP---GVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEE 311 (357)
T ss_dssp HHHHHHHH------H---TTC-HHHHHHHHHHHHHHHH-TST---TEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------H---HHH-HHHHHHHHHHHHHHHH-hCC---CCeeccCCCcceEEEEEecCChHHHHHHHHHHHHh
Confidence 33222221 1 122 2346777889999998 772 1565 3456677888754 1 2334444455
Q ss_pred ccEEEcCCC---------cEEEcc----CChhhHHHHHHHHHHHH
Q 012628 424 WHVYMTKDG---------RISLAG----LSLAKCEYLADAIIDSY 455 (459)
Q Consensus 424 ~gI~v~~gg---------Ris~~~----~~~e~i~~~~~~l~~~~ 455 (459)
+||.+.||. |++++. .+.+++++++++|.+++
T Consensus 312 ~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 312 TGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 799999872 777652 26788889998888765
No 172
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.94 E-value=2.2e-25 Score=226.72 Aligned_cols=329 Identities=12% Similarity=0.032 Sum_probs=217.9
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC---CcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
.++.|+ |.+ . . ..|.+.+++.+.+.. .+.|.+ ..|..++++.+++++....|.+ ..+++ |+||
T Consensus 67 ~~~~lg-~~~----~-~-~~p~v~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~---~~~~~--~~gg 132 (474)
T 1wyu_B 67 TFYPLG-SCT----M-K-YNPKLHEEAARLFAD--LHPYQDPRTAQGALRLMWELGEYLKALTGMD---AITLE--PAAG 132 (474)
T ss_dssp SCCCBT-TTC----C-C-CCCHHHHHHHHTTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS---EEECC--CSSH
T ss_pred Cccccc-ccc----c-c-CCHHHHHHHHHHHHh--cCCCCchhhChHHHHHHHHHHHHHHHHHCCC---ceeec--ChHH
Confidence 456777 543 1 2 245566666554321 234443 4576777777777765554543 13445 8999
Q ss_pred hhHHHHHHHHHHH--hCCCC-----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEE
Q 012628 161 TGSLRLAAALIER--YFPGA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233 (459)
Q Consensus 161 t~a~~l~~~~~~~--~~~gd-----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~i 233 (459)
++++.++..++.. ..+|| +|++++|+|+.+...++..|++++.+|++ +++.+|+++|++++++ +++++
T Consensus 133 t~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~--~~~~~d~~~L~~~i~~---~t~~v 207 (474)
T 1wyu_B 133 AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG--PEGEVDLEALKRELGP---HVAAL 207 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC--TTSSBCHHHHHHHCST---TEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC--CCCCcCHHHHHHhhCC---CceEE
Confidence 9999886433322 24887 99999999999999999999999999984 4678999999999975 68888
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC-C--
Q 012628 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY-A-- 310 (459)
Q Consensus 234 i~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G-- 310 (459)
++++| ||||.+. +++++|+++|++||+++|+|++|.....+.. .... .+.++++.|+||.|+.| |
T Consensus 208 ~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~-----~~~~----~g~di~~~s~~K~~~~p~g~g 275 (474)
T 1wyu_B 208 MLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGWA-----RPGD----MGFDVVHLNLHKTFTVPHGGG 275 (474)
T ss_dssp EECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC-----CHHH----HTCSEEECCTTTTTCCCCTTS
T ss_pred EEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccCC-----Cccc----CCCcEEEEeCccccccCCCCC
Confidence 88888 6899882 5799999999999999999999976554211 1111 13568888999999877 5
Q ss_pred -CCcceEEEEeCChhHHHHHHHHHH-----hh----------ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012628 311 -ERIGAMNVVCSSSDLAARVKSQLK-----RL----------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG 374 (459)
Q Consensus 311 -~RiG~~~~v~~~~~~~~~~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 374 (459)
.|+||+++ ++++++.+...+. .. .+....+.+..++.++...+...+ .+.+++..+
T Consensus 276 G~~~G~~~~---~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g-----~~~l~~~~~ 347 (474)
T 1wyu_B 276 GPGSGPVGV---KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-----LEGLKKAAA 347 (474)
T ss_dssp CCCCCCEEE---CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred CCCeEEEEE---cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 59999976 6663322210000 00 000111244455555554443211 234678889
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccCCccee-eec----CCCH-HHHHHHHhcccEEEcC-------CC--cEEEccC
Q 012628 375 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT----GLNK-AQSDNMTNKWHVYMTK-------DG--RISLAGL 439 (459)
Q Consensus 375 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f-~~~----~l~~-~~~~~ll~~~gI~v~~-------gg--Ris~~~~ 439 (459)
++.++++++.+.|+ ++| +++..+...+. .|+ +.+. ++.++|+++ ||.+.. .+ ||+++..
T Consensus 348 ~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~~~~~~~~~~~~~lRis~~~~ 421 (474)
T 1wyu_B 348 LAVLNARYLKELLK-EKG----YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLEL-GFHPPTVYFPLIVKEALMVEPTET 421 (474)
T ss_dssp HHHHHHHHHHHHHH-HTT----CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCCCEESCSTTSTTCEEECCCTT
T ss_pred HHHHHHHHHHHHHh-hcC----cEecCCCCcceEEEEEcCCCCCHHHHHHHHHHC-CccccccccccccCCEEEEEeecC
Confidence 99999999999999 765 45432222221 233 3344 456677764 997521 12 9998754
Q ss_pred -ChhhHHHHHHHHHHHHhh
Q 012628 440 -SLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 440 -~~e~i~~~~~~l~~~~~~ 457 (459)
+++++++++++|++++++
T Consensus 422 ~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 422 EAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 789999999999988753
No 173
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.94 E-value=2.5e-26 Score=225.40 Aligned_cols=318 Identities=12% Similarity=0.040 Sum_probs=201.6
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--------CCCCCCCcccHHHHHHHHHHHhcCCCCccccC-c-eE
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-R-VA 153 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~-~-i~ 153 (459)
.++.++.|. .++++.+++++.+.+.... ...|++ +..++++.+.+.+....|.+ ++ + ++
T Consensus 4 ~~~l~~~~~-------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~--~~~~~i~ 72 (362)
T 2c0r_A 4 RAYNFNAGP-------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGA--VYEAVHNEAQARLLALLGNP--TGYKVLF 72 (362)
T ss_dssp CCEECCSSS-------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH--HHHHHHHHHHHHHHHHTTCC--SSEEEEE
T ss_pred ceeeccCCC-------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcH--HHHHHHHHHHHHHHHHhCCC--CCcEEEE
Confidence 345555552 2348999999998774310 011222 23334444444443333431 33 5 45
Q ss_pred EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCC--CCCHHHHHHHHHcCCCC
Q 012628 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTV--GLDFEGMIADIKAAPGG 229 (459)
Q Consensus 154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~--~~d~e~l~~~i~~~~~~ 229 (459)
+ |+|++++++++ +.+.+.|||+|+++++.+..+ ...++..| +++.+|++.++++ .+|+++++ ++ ++
T Consensus 73 ~--t~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~---~~ 142 (362)
T 2c0r_A 73 I--QGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ---DN 142 (362)
T ss_dssp E--SSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC---TT
T ss_pred E--CCCchHHHHHH--HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC---CC
Confidence 6 89999999998 444577999999987765443 45667789 9999998522223 35666653 43 37
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccC
Q 012628 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY 309 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 309 (459)
++++++++|+||||.+++ ++++| +|+++++|++|..+... . . +... ++++.|+||.+|++
T Consensus 143 t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~---~---~----~~~~--d~~~~s~~K~~g~~ 202 (362)
T 2c0r_A 143 AAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP---F---D----LNQF--GLVYAGAQKNLGPS 202 (362)
T ss_dssp EEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC---C---C----GGGC--SEEEEETTTTTCCS
T ss_pred cCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCc---c---c----hhHC--cEEEEeccccccCc
Confidence 899999999999999754 45555 89999999998755421 1 1 1222 47788999999998
Q ss_pred CCCcceEEEEeCChhHHHHHHHHH------H--hhccccccCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHH
Q 012628 310 AERIGAMNVVCSSSDLAARVKSQL------K--RLARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKNV 379 (459)
Q Consensus 310 G~RiG~~~~v~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~~ 379 (459)
| +||+++ +++.++.+.... . ........+++..++.++...|+.. .+ .+++++++++++
T Consensus 203 G--~G~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~ 271 (362)
T 2c0r_A 203 G--VTVVIV---REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI------EERGGLEGVQQANRKK 271 (362)
T ss_dssp S--CEEEEE---EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH------HHTTHHHHHHHHHHHH
T ss_pred C--cEEEEE---cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHH------HHhCCHHHHHHHHHHH
Confidence 9 899976 666433322100 0 0011122356666666665555321 12 468889999999
Q ss_pred HHHHHHHHhhccC-CCCCccccc---CCcceeeecCC----C-HHHHHHHHhcccEEEcCC----C--cEEEccC-Chhh
Q 012628 380 RQKLFDSLSAKDK-SGKDWSFIL---RQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAK 443 (459)
Q Consensus 380 ~~~l~~~L~~~~g-~~~~~~~~~---~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~ 443 (459)
++++.+.|+ ++| + +++.. ..++.++++.+ + .++++.| +++||.+.+| + |||++.. ++++
T Consensus 272 ~~~l~~~L~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~~~~iRis~~~~~~~e~ 346 (362)
T 2c0r_A 272 ASLIYDAID-QSGGF---YRGCVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRSVGGLRASIYNAVPYES 346 (362)
T ss_dssp HHHHHHHHH-TSTTS---SEESSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTTTCSEEEECCTTSCHHH
T ss_pred HHHHHHHHH-HcCCc---cccCCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCCCCEEEEECCCCCCHHH
Confidence 999999999 875 2 13321 11233344433 2 2345555 4569988775 2 9999754 7899
Q ss_pred HHHHHHHHHHHHhhc
Q 012628 444 CEYLADAIIDSYHNV 458 (459)
Q Consensus 444 i~~~~~~l~~~~~~~ 458 (459)
+++++++|++++++.
T Consensus 347 i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 347 CEALVQFMEHFKRSR 361 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988753
No 174
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.94 E-value=1e-26 Score=227.90 Aligned_cols=317 Identities=13% Similarity=0.066 Sum_probs=206.6
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcC---CCCCCCC---Cc----ccHHHHHHHHHHHhcCCCCccccCceE
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLP---IE----GLAAFNKVTAELLFGADNSVLKEQRVA 153 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~Y~~---~~----g~~~lr~aia~~l~~~~~~~~~~~~i~ 153 (459)
.+++++.|.+ ++|+.+++++.+.+... ....|.. .. ...++++.+++++... ++++|+
T Consensus 3 ~~~~~~~g~~-------~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~v~ 70 (360)
T 1w23_A 3 QVFNFNAGPS-------ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-----NDYQIL 70 (360)
T ss_dssp CCEECCSSSC-------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-----TTEEEE
T ss_pred ceEeecCCCc-------CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCceEE
Confidence 3566666642 34899999999887531 0011211 12 3567888888876431 256898
Q ss_pred Eeecccc-hhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH-HHHcCCC
Q 012628 154 TVQGLSG-TGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPG 228 (459)
Q Consensus 154 ~~~t~gg-t~a~~l~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~-~i~~~~~ 228 (459)
+ |+|+ ++++.++ +...+.+ ||.|+++.++|.. ...++..| +++.+|++++ ++.+|++++++ ++++
T Consensus 71 ~--~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~-~~~~d~~~l~~~~i~~--- 140 (360)
T 1w23_A 71 F--LQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKA-NSYQSIPDFSEFQLNE--- 140 (360)
T ss_dssp E--ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGG-GTSCSCCCGGGCCCCT---
T ss_pred E--ECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccc-cCcCCccchHhhccCC---
Confidence 8 9998 9999998 4444544 6677777666643 33467789 9999998532 33479899988 7754
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (459)
+++++++++||||||.+++ + |. ++||+++|+|++|..+... . .+ ... .++++|+||.+|+
T Consensus 141 ~~k~v~~~~~~nptG~~~~--~---i~---~~~~~~li~D~a~~~~~~~---~---~~----~~~--di~~~s~sK~~~~ 200 (360)
T 1w23_A 141 NDAYLHITSNNTIYGTQYQ--N---FP---EINHAPLIADMSSDILSRP---L---KV----NQF--GMIYAGAQKNLGP 200 (360)
T ss_dssp TEEEEEEESEETTTTEECS--S---CC---CCCSSCEEEECTTTTTSSC---C---CG----GGC--SEEEEETTTTTSC
T ss_pred CCCEEEEeCCCCCcceecc--c---cc---ccCCceEEEechhhcCCCC---c---Cc----ccC--CEEEEEcccccCC
Confidence 7889999999999999987 2 32 3799999999998765421 1 11 112 3789999999997
Q ss_pred CCCCcceEEEEeCChhHHHHHHHHHHhh--------ccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHH
Q 012628 309 YAERIGAMNVVCSSSDLAARVKSQLKRL--------ARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNV 379 (459)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~ 379 (459)
+| +||+++ +++.++++....... ....+.+++..++.++...++. +. .. .+++++++++++
T Consensus 201 ~G--~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~---~~~~~~~~~~~~~~~ 270 (360)
T 1w23_A 201 SG--VTVVIV---KKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW--IK---DLGGAEAIAKQNEEK 270 (360)
T ss_dssp TT--CEEEEE---EHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH--HH---HTTHHHHHHHHHHHH
T ss_pred CC--cEEEEE---cHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH--HH---HhcCHHHHHHHHHHH
Confidence 77 899976 666333221100000 0112234455554444443321 10 11 367889999999
Q ss_pred HHHHHHHHhhccCCCCCc-ccc-cC--CcceeeecCCC-----HHHHHHHHhcccEEEcCC----C--cEEEccC-Chhh
Q 012628 380 RQKLFDSLSAKDKSGKDW-SFI-LR--QIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAK 443 (459)
Q Consensus 380 ~~~l~~~L~~~~g~~~~~-~~~-~~--~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~ 443 (459)
++++.+.|+ +++ + + ... .+ .+++++|+.+. .+++++|. ++||.+.+| + ||+++.. ++++
T Consensus 271 ~~~l~~~L~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~~~iRis~~~~~~~~~ 345 (360)
T 1w23_A 271 AKIIYDTID-ESN--G-FYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAK-EQGFVGLNGHRSVGGCRASIYNAVPIDA 345 (360)
T ss_dssp HHHHHHHHH-TTT--T-SSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHH-HTTEESCBCCTTTCSEEEECCTTSCHHH
T ss_pred HHHHHHHHH-Hcc--C-cccccCCchhccCcEEEEEcCCCccHHHHHHHHH-HCCeeeecCCCCCCeEEEEecCCCCHHH
Confidence 999999999 775 1 2 322 12 34657776653 23345544 469999887 2 9999854 8899
Q ss_pred HHHHHHHHHHHHhh
Q 012628 444 CEYLADAIIDSYHN 457 (459)
Q Consensus 444 i~~~~~~l~~~~~~ 457 (459)
+++++++|++++++
T Consensus 346 i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 346 CIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 175
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=5e-25 Score=219.16 Aligned_cols=288 Identities=15% Similarity=0.135 Sum_probs=177.5
Q ss_pred eecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHH
Q 012628 87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL 164 (459)
Q Consensus 87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~ 164 (459)
..+++.| +....+++.+.+.+++.........+.|. +.....++++.+++++.. + +.++ +.+|++++
T Consensus 25 ~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a~ 93 (398)
T 1gc0_A 25 GGALVPP-VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGG-------E-AGLA--LASGMGAI 93 (398)
T ss_dssp TTBSSCC-BCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHH
T ss_pred CCCcCCC-ccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHHH
Confidence 3455655 44455555677766664221111113343 567788999999999743 2 3444 56668999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 165 RLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 165 ~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
+++. ...+.+||+|+++.|+|..+...+ +..|++++.++. .|++.+++++++ +++++++++|+|
T Consensus 94 ~~~l--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~---~~~~v~~~~~~n 161 (398)
T 1gc0_A 94 TSTL--WTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMTP---ATRVIYFESPAN 161 (398)
T ss_dssp HHHH--HHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCCT---TEEEEEEESSCT
T ss_pred HHHH--HHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcCC---CCeEEEEECCCC
Confidence 9983 334679999999999999887665 667888888875 279999999875 788999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEE
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVV 319 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v 319 (459)
|||.++ ++++|+++|++||+++|+|++|..+.+.. .+ ..+.++++.|+||.++.+|+|+ ||+++
T Consensus 162 ptG~~~---~l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~-----~~~~d~~~~S~sK~~~~~~~~~~G~l~~- 226 (398)
T 1gc0_A 162 PNMHMA---DIAGVAKIARKHGATVVVDNTYCTPYLQR------PL-----ELGADLVVHSATKYLSGHGDITAGIVVG- 226 (398)
T ss_dssp TTCCCC---CHHHHHHHHGGGTCEEEEECTTTHHHHCC------GG-----GGTCSEEEEETTTTTTCSSSCCCEEEEE-
T ss_pred CCcccc---cHHHHHHHHHHcCCEEEEECCCcccccCC------ch-----hhCceEEEECCccccCCCCCCeEEEEEE-
Confidence 999996 58899999999999999999987654321 11 1246789999999999999998 88755
Q ss_pred eCChhHHHHHHHHHHhhccc-cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----
Q 012628 320 CSSSDLAARVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS----- 393 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~----- 393 (459)
+++.++. .+...... .....+...+.++...++. +....++..++.+.+.+.|+ +++.
T Consensus 227 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~-~~~~v~~v~ 290 (398)
T 1gc0_A 227 --SQALVDR---IRLQGLKDMTGAVLSPHDAALLMRGIKT----------LNLRMDRHCANAQVLAEFLA-RQPQVELIH 290 (398)
T ss_dssp --CHHHHHH---HHHTHHHHHTCCCCCHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHH-TCTTEEEEE
T ss_pred --ChHHHHH---HHHHHhhccCCCCCCHHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHh-cCCCeeEEE
Confidence 6654332 12221111 1223455555555555542 23334455556666666666 4320
Q ss_pred -C-----CCccccc----CCcceeeecCC--CHHHHHHHHhcccEEEc
Q 012628 394 -G-----KDWSFIL----RQIGMFSFTGL--NKAQSDNMTNKWHVYMT 429 (459)
Q Consensus 394 -~-----~~~~~~~----~~~g~f~~~~l--~~~~~~~ll~~~gI~v~ 429 (459)
| +.+.+.. ..++++.| .+ ..+.+..++++.+|.+.
T Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~i~~~ 337 (398)
T 1gc0_A 291 YPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFMNALQLFSR 337 (398)
T ss_dssp EC----------------CCTTEEEE-EETTHHHHHHHHHHHCSSSEE
T ss_pred CCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHHHhCCCcee
Confidence 0 0112222 24566554 33 23556777777777653
No 176
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.94 E-value=3.1e-26 Score=224.42 Aligned_cols=304 Identities=13% Similarity=-0.013 Sum_probs=193.6
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCE--
Q 012628 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-- 179 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~-- 179 (459)
++|.+.+++.+.+. ...|++..+..++++++++++... . .++ ++||++++.++. ...+.+||+
T Consensus 27 ~~p~v~~ai~~~~~---~~~~~~~~~~~~l~~~la~~~~~~-------~-~i~--~~~g~~a~~~a~--~~~~~~g~~~v 91 (359)
T 3pj0_A 27 VLTEALQNIDDNLE---SDIYGNGAVIEDFETKIAKILGKQ-------S-AVF--FPSGTMAQQIAL--RIWADRKENRR 91 (359)
T ss_dssp HHHHHTTTSCTTCB---CCBTTBSHHHHHHHHHHHHHHTCS-------E-EEE--ESCHHHHHHHHH--HHHHHHHTCCE
T ss_pred CCHHHHHHHHhhcc---cCcccCCHHHHHHHHHHHHHhCCC-------c-EEE--eCCHHHHHHHHH--HHHHhcCCCcE
Confidence 36888888777442 256778889999999999997432 2 344 578889998873 333557776
Q ss_pred EEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q 012628 180 VLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIA 255 (459)
Q Consensus 180 Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT-G~~~s~~~l~~i~ 255 (459)
|+++.++|..+. ......|++++.+|. +++.+|+++++++ . ++++++++++||||| |.+++.+++++|+
T Consensus 92 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~ 164 (359)
T 3pj0_A 92 VAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKIS 164 (359)
T ss_dssp EEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred EEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHH
Confidence 555545543221 122456899988876 3568999999887 3 367888899999998 7999999999999
Q ss_pred HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012628 256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR 335 (459)
Q Consensus 256 ~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~ 335 (459)
++|++||+++|+|++|.......... ....+. . ...+++.||||.++.++ + ||++. ++++++.+......
T Consensus 165 ~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~-~-~~d~~~~s~sK~~~~~~-g-g~~~~---~~~l~~~~~~~~~~ 234 (359)
T 3pj0_A 165 EYCHEQGISLHLDGARLWEITPFYQK---SAEEIC-A-LFDSVYVSFYKGIGGIA-G-AILAG---NDDFVQEAKIWKRR 234 (359)
T ss_dssp HHHHHHTCEEEEEETTCGGGHHHHTC---CHHHHH-T-TCSEEEEESSSTTCCSS-C-EEEEE---CHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECcchhcchhhhCC---CHHHhh-c-cCCEEEEeccccCCCcc-e-EEEEC---CHHHHHHHHHHHHH
Confidence 99999999999999976443100001 111222 2 22355679999987553 2 66544 88866555432221
Q ss_pred hccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccc-cCCcceeeecCC-
Q 012628 336 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI-LRQIGMFSFTGL- 412 (459)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~-~~~~g~f~~~~l- 412 (459)
.. . ........+.++...++ +.+ +..+++.++++++.+.|+ ++ | +++. .+.+++|+|+.+
T Consensus 235 ~~-~-~~~~~~~~~~a~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~ 297 (359)
T 3pj0_A 235 YG-G-DLISLYPYILSADYYFE---------KRI-GKMAEYFEAAKGLAERFN-SCSG----VKTVPEVPVSNMFHVYFE 297 (359)
T ss_dssp TT-C-CCSCCHHHHHHHHHHHH---------HHG-GGHHHHHHHHHHHHHHHH-TSTT----EEEESSSCSSSEEEEEES
T ss_pred hC-C-CcchhHHHHHHHHHHHH---------HHH-HHhHHHHHHHHHHHHHHh-hCCC----ceeeccCCcceEEEEEec
Confidence 11 1 11122222222222221 112 333456778889999999 76 4 5553 345555655533
Q ss_pred -C----HHHHHHHHhcccEEEcCCC----------cEEEcc----CChhhHHHHHHHHHHH
Q 012628 413 -N----KAQSDNMTNKWHVYMTKDG----------RISLAG----LSLAKCEYLADAIIDS 454 (459)
Q Consensus 413 -~----~~~~~~ll~~~gI~v~~gg----------Ris~~~----~~~e~i~~~~~~l~~~ 454 (459)
. .+.+.+.+.++||.+.||. |++++. .+.+++++++++|.+.
T Consensus 298 ~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 298 NSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp SCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 2 2344444455799999982 777652 3678888888888765
No 177
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.94 E-value=2.5e-25 Score=225.08 Aligned_cols=321 Identities=13% Similarity=0.029 Sum_probs=217.2
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc---CceEEeecccchhHHHHHHHHHHH-h---
Q 012628 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE---QRVATVQGLSGTGSLRLAAALIER-Y--- 174 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~---~~i~~~~t~ggt~a~~l~~~~~~~-~--- 174 (459)
.++.+.+++.+++..+. ..|....+..++++.+.+++....|.+.+. ..+++ |+|||+++.++...+.. +
T Consensus 54 ~~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~--t~ggtea~~~al~a~~~~~~~~ 130 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGGMAMKWRWRKR 130 (452)
T ss_dssp CCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEE--eCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999988876432 456666777778888777766655554221 13778 99999999988433321 0
Q ss_pred --CCC-----CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012628 175 --FPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT 247 (459)
Q Consensus 175 --~~g-----d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s 247 (459)
.+| ++|++++ +|..|...++..|++++.+|+++ +++.+|+++|++++++ +++++++++|+||||.+
T Consensus 131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~---~t~~v~~~~~~n~tG~~-- 203 (452)
T 2dgk_A 131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDE---NTIGVVPTFGVTYTGNY-- 203 (452)
T ss_dssp HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCT---TEEEEECBBSCTTTCBB--
T ss_pred HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhh---CCEEEEEEcCCcCCccc--
Confidence 145 5999999 99999999999999999999853 3689999999999976 78899999999999999
Q ss_pred HHHHHHHHHHHHhc------CCeeEEeccCCCCCC---CCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 248 PEQWEKIADVIQEK------NHIPFFDVAYQGFAS---GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 248 ~~~l~~i~~l~~~~------~~~ii~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
+++++|+++|+++ |+++++|++|..+.. .+. . .+ ......-++++.|++| |++.|+|+||+++
T Consensus 204 -~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~----~~~~~~~d~~~~~~hK-~~~~~~~~G~~~~ 275 (452)
T 2dgk_A 204 -EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD-I-VW----DFRLPRVKSISASGHK-FGLAPLGCGWVIW 275 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT-C-CC----STTSTTEEEEEEETTT-TTCCCSSCEEEEE
T ss_pred -CCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCcc-c-hh----hcCCCCCcEEEECccc-ccCCCCCeEEEEE
Confidence 7788899999995 999999999987642 110 0 00 0112235667889999 5568899999954
Q ss_pred EeCChhHHHHHHHHHHhhcccc---------ccCC---chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 319 VCSSSDLAARVKSQLKRLARPM---------YSNP---PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS 386 (459)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (459)
++++.. .+.+....... ..+. ..+++.++...+. .+.++++.+++.++++++.+.
T Consensus 276 --~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~~~~a~~l~~~ 342 (452)
T 2dgk_A 276 --RDEEAL---PQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNASYQVAAYLADE 342 (452)
T ss_dssp --SSGGGS---CGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCHHHH---HHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHH
Confidence 444321 11111000000 0011 2233444433332 234678888999999999999
Q ss_pred HhhccCCCCCccccc-----CCcceeeec--C-----CC-HHHHHHHHhcccEEEc----CC---C----cEEEccC-Ch
Q 012628 387 LSAKDKSGKDWSFIL-----RQIGMFSFT--G-----LN-KAQSDNMTNKWHVYMT----KD---G----RISLAGL-SL 441 (459)
Q Consensus 387 L~~~~g~~~~~~~~~-----~~~g~f~~~--~-----l~-~~~~~~ll~~~gI~v~----~g---g----Ris~~~~-~~ 441 (459)
|+ +++ ++++.. +..++++|. + ++ .++.++|.+ .||.+. |+ + ||+++.. ++
T Consensus 343 L~-~~~---~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~ 417 (452)
T 2dgk_A 343 IA-KLG---PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRL-RGWQVPAFTLGGEATDIVVMRIMCRRGFEM 417 (452)
T ss_dssp HH-TTS---SEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHH-TTCBCCEEECSTTCTTCEEEEEECCTTCCH
T ss_pred HH-hCC---CeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHh-cCCeeeeeeCCcccCCeEEEEEEecCCCCH
Confidence 99 874 155553 234554442 2 23 455666665 598532 32 2 9998764 78
Q ss_pred hhHHHHHHHHHHHHhhc
Q 012628 442 AKCEYLADAIIDSYHNV 458 (459)
Q Consensus 442 e~i~~~~~~l~~~~~~~ 458 (459)
++++++++.|+++++.+
T Consensus 418 e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 418 DFAELLLEDYKASLKYL 434 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887653
No 178
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.94 E-value=2.8e-25 Score=218.69 Aligned_cols=305 Identities=10% Similarity=0.002 Sum_probs=207.5
Q ss_pred ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH---hCC
Q 012628 100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER---YFP 176 (459)
Q Consensus 100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~---~~~ 176 (459)
+++++.+.+++.+.+... .|.+.....++|+++++++.. +++++ |+||+++++++ +... +.+
T Consensus 9 ~~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~~~~~~~~ 73 (375)
T 2fnu_A 9 PCLDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL--YRNFSEFSAD 73 (375)
T ss_dssp CCCCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHSSCCCTT
T ss_pred CCCCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHhcccCCC
Confidence 345899999999988642 244667789999999999743 27888 99999999998 3433 568
Q ss_pred CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012628 177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 177 gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~ 256 (459)
||+|++++|+|..+...++..|++++.+|+++ ++.+|++.+++++++ ++++++++++ ||.+. ++++|.+
T Consensus 74 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~---~l~~i~~ 142 (375)
T 2fnu_A 74 RNEIITTPISFVATANMLLESGYTPVFAGIKN--DGNIDELALEKLINE---RTKAIVSVDY---AGKSV---EVESVQK 142 (375)
T ss_dssp SCEEEECSSSCTHHHHHHHHTTCEEEECCBCT--TSSBCGGGSGGGCCT---TEEEEEEECG---GGCCC---CHHHHHH
T ss_pred CCEEEECCCccHhHHHHHHHCCCEEEEeccCC--CCCCCHHHHHhhcCc---CceEEEEeCC---cCCcc---CHHHHHH
Confidence 99999999999999999999999999999853 347999999988865 6777665544 99995 4788999
Q ss_pred HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEeCChhHHHHHHHHHH
Q 012628 257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARVKSQLK 334 (459)
Q Consensus 257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~ 334 (459)
+|++||+++|+|++|....... . .. +.... ++.+.||| |.+++ | +|++++ .++++..+.+.....
T Consensus 143 l~~~~~~~li~D~a~~~~~~~~---~-~~----~~~~~-~i~~~s~s~~K~~~~-g--~g~~~~-~~~~~~~~~~~~~~~ 209 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEYQ---N-KK----VGGFA-LASVFSFHAIKPITT-A--EGGAVV-TNDSELHEKMKLFRS 209 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEET---T-EE----TTSSS-SEEEEECCTTSSSCC-S--SCEEEE-ESCHHHHHHHHHHTB
T ss_pred HHHHcCCEEEEECccccCCeEC---C-ee----ccccC-CeEEEeCCCCCCccc-c--CceEEE-eCCHHHHHHHHHHHh
Confidence 9999999999999976543210 0 00 11112 47778888 99985 7 798853 345665444433211
Q ss_pred hhc-----------cccc-cCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 012628 335 RLA-----------RPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR 402 (459)
Q Consensus 335 ~~~-----------~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 402 (459)
... ...+ ...+.+.+.++...+ +.+++..++++++++++.+.|+ +++ ++++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~ 275 (375)
T 2fnu_A 210 HGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL----------KKAPFLMQKREEAALTYDRIFK-DNP---YFTPLHP 275 (375)
T ss_dssp TTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHT-TCS---SEEESGG
T ss_pred cCCccccccccccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhh-cCC---CccccCC
Confidence 100 0000 122333222222111 1246777888889999999999 762 1454443
Q ss_pred ----Ccc-eeeec--C---C-CHH-HHHHHHhcccEEEcC----C-----------------------C--cEEEccC-C
Q 012628 403 ----QIG-MFSFT--G---L-NKA-QSDNMTNKWHVYMTK----D-----------------------G--RISLAGL-S 440 (459)
Q Consensus 403 ----~~g-~f~~~--~---l-~~~-~~~~ll~~~gI~v~~----g-----------------------g--Ris~~~~-~ 440 (459)
.++ ++.|+ . . +.+ +.+.|. ++||.+.. + + ||+++.. +
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 276 LLKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp GCSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred CCCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 123 22333 2 2 333 455554 56999872 1 2 8887643 7
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 012628 441 LAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 441 ~e~i~~~~~~l~~~~~~~ 458 (459)
++++++++++|+++++++
T Consensus 355 ~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999998765
No 179
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.93 E-value=5.5e-25 Score=213.15 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeeeee
Q 012628 130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYR 205 (459)
Q Consensus 130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~ 205 (459)
++++++++++.. ++.+++ .+|+++++++.. ..+.+||+|+++.|+|..+...+ +..|++++.+|
T Consensus 2 ~l~~~la~~~g~-------~~~i~~---~sG~~a~~~~~~--~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEHA-------EACAAT---ASGMGAIAASVW--TFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC-------SEEEEE---SSHHHHHHHHHH--HHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhCC-------CeEEEe---CChHHHHHHHHH--HhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 689999999743 344554 555999999843 34679999999999999887665 45899888886
Q ss_pred eecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChh
Q 012628 206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDAS 284 (459)
Q Consensus 206 ~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~-~~~~ii~Deay~~~~~~~~~~~~~ 284 (459)
. .|++.+++.+++ +++++++++|+||||.+++ +++|.++|++ +|+++|+|++|.......
T Consensus 70 ~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~------ 130 (331)
T 1pff_A 70 M-------AVPGNIEKHLKP---NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN------ 130 (331)
T ss_dssp T-------TSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred C-------CCHHHHHHhhcC---CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC------
Confidence 5 378889888875 7888999999999999974 8889999999 999999999987554220
Q ss_pred HHHHHHhcCCeEEEEEcCCcCcccCCCC-cceEEEEeCCh-hHHHHHHHHHHhhccc-cccCCchHHHHHHHHH
Q 012628 285 SVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSS-DLAARVKSQLKRLARP-MYSNPPVHGARIVANV 355 (459)
Q Consensus 285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~v~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 355 (459)
.+ ..+.++++.|+||.++.+|.| +||+++ ++ + +.+.+...... ...+.+..++.++...
T Consensus 131 ~~-----~~~~d~~~~s~~K~~~~~~~r~~G~~~~---~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (331)
T 1pff_A 131 PL-----DLGVDIVVHSATKYINGHTDVVAGLVCS---RADI----IAKVKSQGIKDITGAIISPHDAWLITRG 192 (331)
T ss_dssp GG-----GGTCSEEEEETTTTTSSSSSCCCEEEEE---CHHH----HHHHHHTCCCCCCCCCCCHHHHHHHHHH
T ss_pred hh-----hcCCcEEEEECccccCCCCCceEEEEEe---CcHH----HHHHHHHHHHhhcCCCCCHHHHHHHHcC
Confidence 11 234689999999999999999 789865 65 6 44445544443 3335566665554333
No 180
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.93 E-value=5.7e-25 Score=216.31 Aligned_cols=300 Identities=15% Similarity=0.096 Sum_probs=203.6
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEE
Q 012628 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV 180 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~V 180 (459)
+++.+.+++.+.+..+ .|.+..+..++|+++++++.. +++++ ++|||++++++ +... +.+||+|
T Consensus 14 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~sGt~al~~a--l~~~~~~~gd~V 78 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRHG---QYILGPEVTELEDRLADFVGA--------KYCIS--CANGTDALQIV--QMALGVGPGDEV 78 (367)
T ss_dssp HHHHHHHHHHHHHHHC---CCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred cCHHHHHHHHHHHhcC---CccCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHhCCCCcCEE
Confidence 4788999998887653 466778899999999999743 36777 89999999998 3433 5699999
Q ss_pred EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012628 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE 260 (459)
Q Consensus 181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~ 260 (459)
+++.|+|..+...++..|++++.++++ ++++.+|++.+++++++ ++++++ |+||||.. .++++|.++|++
T Consensus 79 i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~~~~G~~---~~~~~i~~la~~ 148 (367)
T 3nyt_A 79 ITPGFTYVATAETVALLGAKPVYVDID-PRTYNLDPQLLEAAITP---RTKAII---PVSLYGQC---ADFDAINAIASK 148 (367)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGTGGGCCT---TEEEEC---CBCGGGCC---CCHHHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHhcCc---CCcEEE---eeCCccCh---hhHHHHHHHHHH
Confidence 999999999999999999999999985 34588999999999865 777776 78999987 678889999999
Q ss_pred cCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEEcC--CcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhc
Q 012628 261 KNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA 337 (459)
Q Consensus 261 ~~~~ii~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~ 337 (459)
||+++|+|++|.... +.+ ... .... ++++.|| +|.++.+|. .|++ +++++++.+++........
T Consensus 149 ~~~~li~D~a~~~g~~~~~---~~~------~~~~-di~~~Sf~~~K~l~~~g~-gg~~--~~~~~~l~~~~~~~~~~g~ 215 (367)
T 3nyt_A 149 YGIPVIEDAAQSFGASYKG---KRS------CNLS-TVACTSFFPSAPLGCYGD-GGAI--FTNDDELATAIRQIARHGQ 215 (367)
T ss_dssp TTCCBEEECTTTTTCEETT---EET------TSSS-SEEEEECCTTSSSCCSSC-CEEE--EESCHHHHHHHHHHTBTTE
T ss_pred cCCEEEEECccccCCeECC---eec------cCCC-CEEEEECCCCCcCCCcCc-eeEE--EeCCHHHHHHHHHHHhcCC
Confidence 999999999976422 211 110 1111 5788887 899996687 7777 4566774444433211100
Q ss_pred c--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc-CCc---c
Q 012628 338 R--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-RQI---G 405 (459)
Q Consensus 338 ~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~---g 405 (459)
. +.....+.+.+.++...++ .+++..++.+++++++.+.|+ ++++ .+.. +.+ .
T Consensus 216 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~----------~~~~~~~~~~~~~~~~~~~L~-~~~~----~~~~~~~~~~~~ 280 (367)
T 3nyt_A 216 DRRYHHIRVGVNSRLDTLQAAILLPKLE----------IFEEEIALRQKVAAEYDLSLK-QVGI----GTPFIEVNNISV 280 (367)
T ss_dssp EETTEECSCCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHH-HTTC----CCCCCCTTEECC
T ss_pred CcCceeeccCcCCCccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cCCe----eccCCCCCCcee
Confidence 0 0112334444333333222 234556666777888888888 7752 2221 111 1
Q ss_pred ee-eecCC-CHHHHHHHHhcccEEEcCCC----------------------------cEEEc-cCChhhHHHHHHHHHHH
Q 012628 406 MF-SFTGL-NKAQSDNMTNKWHVYMTKDG----------------------------RISLA-GLSLAKCEYLADAIIDS 454 (459)
Q Consensus 406 ~f-~~~~l-~~~~~~~ll~~~gI~v~~gg----------------------------Ris~~-~~~~e~i~~~~~~l~~~ 454 (459)
++ .++.. +.+.+...++++||.+.++. |+++. .++++|+++++++|++.
T Consensus 281 ~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 281 YAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred eEEEEEEeCCHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 11 11222 45554444455699776430 55544 34899999999998753
No 181
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.93 E-value=5.9e-25 Score=223.13 Aligned_cols=297 Identities=15% Similarity=0.079 Sum_probs=194.6
Q ss_pred cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC---CEEEEcCCCCcchH----HHhhhCCCC
Q 012628 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNHK----NIFNDARVP 200 (459)
Q Consensus 128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g---d~Vlv~~p~y~~~~----~~~~~~G~~ 200 (459)
..++++.+++++... +++|++ |+|+|++++++ +...+.+| ++|+++.|+|+... ..++..|++
T Consensus 113 ~~~l~~~la~~~g~~------~~~v~~--t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~ 182 (465)
T 3e9k_A 113 DESIVGLMKDIVGAN------EKEIAL--MNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN 182 (465)
T ss_dssp THHHHGGGHHHHTCC------GGGEEE--CSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC------cCCEEE--ECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence 467899999987543 689999 99999999998 33335555 45999999998744 366678988
Q ss_pred eee--eeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 201 WSE--YRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 201 v~~--v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
++. +++. .++++.+|++++++++++..++++++++++||||||.+++ +++|.++|++||+++|+|+++.....
T Consensus 183 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~- 258 (465)
T 3e9k_A 183 IEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV- 258 (465)
T ss_dssp HHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-
T ss_pred ceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc-
Confidence 643 2221 1456789999999999742237889999999999999965 67899999999999999999654321
Q ss_pred CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh---------h------------
Q 012628 278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR---------L------------ 336 (459)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~---------~------------ 336 (459)
.. .+ ...+.++++.|++|.++....++|++++ +++..+.+...+.. .
T Consensus 259 ~~-----~~----~~~~~D~~~~s~~K~l~~gp~~~g~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 326 (465)
T 3e9k_A 259 EL-----YL----HDWGVDFACWCSYKYLNAGAGGIAGAFI---HEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGV 326 (465)
T ss_dssp CC-----CH----HHHTCCEEEECSSSTTCCCTTCCCEEEE---CGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSG
T ss_pred CC-----ch----hhcCCCEEEECcccccccCCCceEEEEE---cHHHHhhcCCcccCccCCCCCcccccCCCcCcCCCh
Confidence 11 11 1223568899999999322236899976 66643322110000 0
Q ss_pred ccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------CCCcccccCC----cc
Q 012628 337 ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS-------GKDWSFILRQ----IG 405 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-------~~~~~~~~~~----~g 405 (459)
.+...++++..+..++...+. +.+. ..+++++++++++++++.+.|+ ++-. ..+++++.|. .|
T Consensus 327 ~~~~~gt~~~~~~~a~~aal~---~~~~--~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~g~~~~~p~~~~~~g 400 (465)
T 3e9k_A 327 CGFRISNPPILLVCSLHASLE---IFKQ--ATMKALRKKSVLLTGYLEYLIK-HNYGKDKAATKKPVVNIITPSHVEERG 400 (465)
T ss_dssp GGGCCSCCCHHHHHHHHHHHH---HHHH--HCHHHHHHHHHHHHHHHHHHHH-HHCC---------CEEECSCSSGGGBC
T ss_pred HHhccCCccHHHHHHHHHHHH---HHHH--cCHHHHHHHHHHHHHHHHHHHH-hhccccccccCCCCeEEeCCCCHhhcc
Confidence 000011344433333333321 1111 1368889999999999999998 6300 0125666554 24
Q ss_pred eeeecC--CC-HHHHHHHHhcccEEEcCCC----cEEE-cc-CChhhHHHHHHHHHHHHhh
Q 012628 406 MFSFTG--LN-KAQSDNMTNKWHVYMTKDG----RISL-AG-LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 406 ~f~~~~--l~-~~~~~~ll~~~gI~v~~gg----Ris~-~~-~~~e~i~~~~~~l~~~~~~ 457 (459)
.++++. .+ .++.+.|.+ +||.+..++ |||+ .. .+++++++++++|++++++
T Consensus 401 ~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 401 CQLTITFSVPNKDVFQELEK-RGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp SCEEEEECCTTCCHHHHHHT-TTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred cEEEEEecCCHHHHHHHHHH-CCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 444432 22 345666665 599886542 9997 23 3889999999999999875
No 182
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.93 E-value=5.7e-25 Score=223.98 Aligned_cols=331 Identities=12% Similarity=0.111 Sum_probs=210.9
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCC------CCCcccHHHHHHHHHHHhcCCCCcccc--CceEE
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNKVTAELLFGADNSVLKE--QRVAT 154 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y------~~~~g~~~lr~aia~~l~~~~~~~~~~--~~i~~ 154 (459)
.+.|+|..+++ ++++.|++++.+.+.+....+| ....+..++++.+.+++...+|...+. .+|++
T Consensus 44 ~~~i~L~a~e~-------~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~ 116 (483)
T 1rv3_A 44 RVGLELIASEN-------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP 116 (483)
T ss_dssp HSSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC
T ss_pred hcCeEEEcCCC-------CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE
Confidence 46899977653 2489999999988864321233 333455677766655555555543211 23666
Q ss_pred eecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------hhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHc
Q 012628 155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDARVPWSEYRYY-DPKTVGLDFEGMIADIKA 225 (459)
Q Consensus 155 ~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~--------~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~ 225 (459)
++|+ +++..+ +.+.+.|||+|++++|+|..+... ++..|..++.+++. +++++.+|++++++++++
T Consensus 117 --~sGs-~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~ 191 (483)
T 1rv3_A 117 --YSGS-PANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL 191 (483)
T ss_dssp --SSHH-HHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred --CCcH-HHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh
Confidence 6666 777776 445578999999999998877542 23334335555542 235688999999999983
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCc
Q 012628 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSK 304 (459)
Q Consensus 226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 304 (459)
++++++++ +++||+ .++ ++++|.++|+++|+++|+|++|. ++.+.+.. ...+ . ..++++.|+||
T Consensus 192 --~~tklIi~-~~sn~~-~~~---dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~--~~p~----~--~~div~~s~~K 256 (483)
T 1rv3_A 192 --FHPKLIIA-GTSCYS-RNL---DYGRLRKIADENGAYLMADMAHISGLVVAGVV--PSPF----E--HCHVVTTTTHK 256 (483)
T ss_dssp --HCCSEEEE-CCSSCC-SCC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCGG----G--TCSEEEEESSG
T ss_pred --cCCcEEEE-eCCcCC-CcC---CHHHHHHHHHHcCCEEEEEccchhcccccCCC--CCCC----C--CCcEEEecCcc
Confidence 16677777 889998 774 47889999999999999999965 22221111 1111 1 23588899999
Q ss_pred CcccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012628 305 NLGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 370 (459)
Q Consensus 305 ~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 370 (459)
.+ .|+|.||+++ +++ +..+.+...... ...++++.....+....+... . ...++
T Consensus 257 ~l--~GprgG~i~~--~~~~~~~~~~~g~~~~y~~~~~~~~~~~~---~~~g~~~~~~iaal~~Al~~~--~---~~~~~ 324 (483)
T 1rv3_A 257 TL--RGCRAGMIFY--RRGVRSVDPKTGKEILYNLESLINSAVFP---GLQGGPHNHAIAGVAVALKQA--M---TPEFK 324 (483)
T ss_dssp GG--CCCSCEEEEE--ECSBCC-------CCBCCHHHHHHHHHTT---TTCCSCCHHHHHHHHHHHHHH--T---SHHHH
T ss_pred cC--CCCCceEEEE--cchhhhhccccCcchhhHHHHHhhhhcCC---cccCCccHHHHHHHHHHHHHH--h---ChhHH
Confidence 87 5889999965 332 222222211111 112233333222222222110 0 12356
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcccccCC-cceeeec-----CCCHHHHHHHHhcccEEEc----CC-------C-
Q 012628 371 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-IGMFSFT-----GLNKAQSDNMTNKWHVYMT----KD-------G- 432 (459)
Q Consensus 371 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-~g~f~~~-----~l~~~~~~~ll~~~gI~v~----~g-------g- 432 (459)
++.++++++++++.+.|. ++| +++..+. ..++.|+ +++.+.+.++++++||.+. || +
T Consensus 325 ~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~ 399 (483)
T 1rv3_A 325 EYQRQVVANCRALSAALV-ELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSG 399 (483)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHH-hcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCce
Confidence 788889999999999999 776 5665543 2345554 3466667777777899998 65 1
Q ss_pred -cEEEccC-C----hhhHHHHHHHHHHHHhh
Q 012628 433 -RISLAGL-S----LAKCEYLADAIIDSYHN 457 (459)
Q Consensus 433 -Ris~~~~-~----~e~i~~~~~~l~~~~~~ 457 (459)
|||++.. + ++++++++++|.++++.
T Consensus 400 iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 400 LRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9998754 3 79999999999988764
No 183
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=2.9e-24 Score=212.78 Aligned_cols=253 Identities=13% Similarity=0.070 Sum_probs=172.0
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~ 199 (459)
+..+..++++++++++.. ++.|++ ++| +++++++.+. .+.+||+|+++.|+|...... ++..|+
T Consensus 50 ~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~a~~~~~~~--~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEGG-------AGAVLT--NTG-MSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp CCHHHHHHHHHHHHHHTC-------SEEEEE--SSH-HHHHHHHHHH--HCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CCccHHHHHHHHHHHhCC-------CcEEEe--CCH-HHHHHHHHHH--HhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 567789999999999754 255665 555 9999998433 367999999999999874433 467788
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~ 279 (459)
+++.+|. .|++.+++++++ +++++++++|+||||.++ ++++|.++|++||+++|+||+|..+....
T Consensus 118 ~~~~~~~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~---~l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 118 RVLFVDQ-------GDEQALRAALAE---KPKLVLVESPSNPLLRVV---DIAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp EEEEECT-------TCHHHHHHHHHT---CCSEEEEECSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EEEEeCC-------CCHHHHHHhhcc---CCcEEEEeCCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 8888875 289999999986 677888899999999996 47889999999999999999998876431
Q ss_pred CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012628 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358 (459)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 358 (459)
.. ..+.++++.|+||.++.+|.|+ ||+++ +++++.+.+..... ......+..++.++...++.
T Consensus 184 -----~~-----~~~~di~~~s~sK~~~~~~~~~~G~~~~--~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~ 247 (386)
T 1cs1_A 184 -----PL-----ALGADLVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWAN----NIGVTGGAFDSYLLLRGLRT 247 (386)
T ss_dssp -----GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE--SSHHHHHHHHHHHH----HHTCBCCHHHHHHHHHHHTT
T ss_pred -----cc-----ccCceEEEEcCcccccCCCCceeEEEEe--CcHHHHHHHHHHHH----hcCCCCCHHHHHHHHhcccH
Confidence 11 1246789999999999899998 98854 33465555543322 21223455555555444432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CC-----Ccccc----cCCcceeeec-CCCHHHHHHHHh
Q 012628 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GK-----DWSFI----LRQIGMFSFT-GLNKAQSDNMTN 422 (459)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~------~~-----~~~~~----~~~~g~f~~~-~l~~~~~~~ll~ 422 (459)
+....+.+.++++.+.+.|+ +++. +. ++++. ...++++.|. .-..+.+...++
T Consensus 248 ----------~~~~~~~~~~~~~~l~~~l~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (386)
T 1cs1_A 248 ----------LVPRMELAQRNAQAIVKYLQ-TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG 316 (386)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHT-TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHH
Confidence 23344556666777777776 5421 10 01111 1125655443 212455666666
Q ss_pred cccEEEc
Q 012628 423 KWHVYMT 429 (459)
Q Consensus 423 ~~gI~v~ 429 (459)
++||.+.
T Consensus 317 ~~gi~~~ 323 (386)
T 1cs1_A 317 GLSLFTL 323 (386)
T ss_dssp TCSSSEE
T ss_pred hCCcceE
Confidence 7899886
No 184
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.93 E-value=1.8e-24 Score=214.85 Aligned_cols=302 Identities=15% Similarity=0.032 Sum_probs=197.9
Q ss_pred ccCcHHHHHHHHHHhhcCCCCCCCCCcc--cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCC
Q 012628 100 PYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFP 176 (459)
Q Consensus 100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~ 176 (459)
|.+++++.+++.+.+.. .|.+..| ..++|+++++++.. +++++ ++||+++++++ +... +.+
T Consensus 8 p~~~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~l~~~~ 71 (394)
T 1o69_A 8 PHMGGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLA--LRVAGVKQ 71 (394)
T ss_dssp ----CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCT
T ss_pred CCCCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHcCCCC
Confidence 44577888998888754 3656567 89999999999742 57888 99999999998 3333 569
Q ss_pred CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012628 177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 177 gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~ 256 (459)
||+|+++.|+|..+...++..|++++.+|++ +++.+|++.+++++++.++++++++++ ||||.. +++++|.+
T Consensus 72 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~---~~l~~i~~ 143 (394)
T 1o69_A 72 DDIVLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNA---AKMDEIVE 143 (394)
T ss_dssp TCEEEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCC---CCHHHHHH
T ss_pred CCEEEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCCh---hhHHHHHH
Confidence 9999999999999999999999999999984 567899999999998632245666654 499977 78899999
Q ss_pred HHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHh
Q 012628 257 VIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR 335 (459)
Q Consensus 257 l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~ 335 (459)
+|+++|+++|+|++|. ++.+.+. .. ....+ +.+.||||..+++|.|+||+++ +++++++.+...
T Consensus 144 l~~~~~~~li~Dea~~~g~~~~~~--~~------~~~~~--~~~~s~s~~K~l~~~~~G~~~~--~~~~l~~~l~~~--- 208 (394)
T 1o69_A 144 ICKENDIVLIEDAAEALGSFYKNK--AL------GTFGE--FGVYSYNGNKIITTSGGGMLIG--KNKEKIEKARFY--- 208 (394)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTE--ET------TSSSS--EEEEECCTTSSSCCSSCEEEEE--SCHHHHHHHHHH---
T ss_pred HHHHcCCEEEEECcCcccceeCCc--cc------ccccC--cEEEEEeCCccCCCCCceEEEE--CCHHHHHHHHHH---
Confidence 9999999999999987 4543221 00 01112 3445554333445678999954 446755554432
Q ss_pred hccccccC--------------CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 012628 336 LARPMYSN--------------PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL 401 (459)
Q Consensus 336 ~~~~~~~~--------------~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 401 (459)
....... .+.+.+.++...++ .+++..++++++++++.+.|+ ++ + ++..
T Consensus 209 -~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----------~l~~~~~~~~~~~~~l~~~L~-~~-~----~~~~ 271 (394)
T 1o69_A 209 -STQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME----------VLEQRVLKKREIYEWYKEFLG-EY-F----SFLD 271 (394)
T ss_dssp -TBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT----------THHHHHHHHHHHHHHHHHHHT-TT-E----ECCC
T ss_pred -HHhccccCccccccccCcccCcCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cc-c----cccC
Confidence 1111101 12222222211121 245567888888999999998 64 2 2222
Q ss_pred CC----cce-eee--cC-----------------------CCHHHHHHHHhcccEEEcCCC-------------------
Q 012628 402 RQ----IGM-FSF--TG-----------------------LNKAQSDNMTNKWHVYMTKDG------------------- 432 (459)
Q Consensus 402 ~~----~g~-f~~--~~-----------------------l~~~~~~~ll~~~gI~v~~gg------------------- 432 (459)
+. .++ +++ ++ ++.+.+...+.++||.++++.
T Consensus 272 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~ 351 (394)
T 1o69_A 272 ELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGN 351 (394)
T ss_dssp CCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSH
T ss_pred CCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChH
Confidence 21 232 122 22 123334444445799998771
Q ss_pred ----------cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 433 ----------RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 433 ----------Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
|.+....+++|+++++++|+++++.
T Consensus 352 ~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 352 SELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1111124899999999999988754
No 185
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.93 E-value=3.9e-25 Score=217.91 Aligned_cols=303 Identities=15% Similarity=0.047 Sum_probs=202.9
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-hCCCCEE
Q 012628 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV 180 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~V 180 (459)
+++.+.+++.+.+... .|.+..+..++|+++++++.. +++++ ++|||++++++ +... +.+||+|
T Consensus 15 ~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sgt~al~~~--l~~l~~~~gd~V 79 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCNV--------NYCIG--CGNGLDALHLI--LKGYDIGFGDEV 79 (373)
T ss_dssp HHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHcCCCCcCEE
Confidence 4788889888887653 367788999999999999743 36777 89999999998 4444 5699999
Q ss_pred EEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012628 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE 260 (459)
Q Consensus 181 lv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~ 260 (459)
+++.|+|..+...++..|++++.++++ ++++.+|++++++++++ ++++++ |+||||.. .++++|.++|++
T Consensus 80 i~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~~---~~~~v~---~~n~~G~~---~~l~~i~~l~~~ 149 (373)
T 3frk_A 80 IVPSNTFIATALAVSYTGAKPIFVEPD-IRTYNIDPSLIESAITE---KTKAII---AVHLYGQP---ADMDEIKRIAKK 149 (373)
T ss_dssp EEETTSCTHHHHHHHHHSCEEEEECEE-TTTTEECGGGTGGGCCT---TEEEEE---EECCTTCC---CCHHHHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecc-ccccCcCHHHHHHhcCC---CCeEEE---EECCCcCc---ccHHHHHHHHHH
Confidence 999999999999999999999999996 35688999999998875 677776 78999998 667889999999
Q ss_pred cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCC--cCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcc
Q 012628 261 KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR 338 (459)
Q Consensus 261 ~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~ 338 (459)
||+++|+|++|......+ .... ... .++++.||| |.++.+|. .|++ ++.+++..+++.........
T Consensus 150 ~~~~li~D~a~~~g~~~~--~~~~------~~~-~d~~~~S~~~~K~l~~~g~-gg~~--~~~~~~~~~~~~~~~~~g~~ 217 (373)
T 3frk_A 150 YNLKLIEDAAQAHGSLYK--GMKV------GSL-GDAAGFSFYPAKNLGSLGD-GGAV--VTNDKDLAEKIKALSNYGSE 217 (373)
T ss_dssp HTCEEEEECTTCTTCEET--TEET------TSS-SSEEEEECCTTSSSCCSSS-CEEE--EESCHHHHHHHHHHHBTTCS
T ss_pred cCCEEEEECCcccCCEEC--CEec------ccc-ccEEEEeCcCCCccCccce-eEEE--EeCCHHHHHHHHHHHhcCcc
Confidence 999999999976533210 1111 111 247778877 88874354 6676 45556644444332211100
Q ss_pred --------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc-CCcceee-
Q 012628 339 --------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-RQIGMFS- 408 (459)
Q Consensus 339 --------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~g~f~- 408 (459)
......+.+.+.+....+ +.+++..++.+++.+++.+.|+ +++ +.+.. +.++...
T Consensus 218 ~~~~~~~~g~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~-~~~----~~~~~~~~~~~~~~ 282 (373)
T 3frk_A 218 KKYHHIYKGFNSRLDELQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGIN-NPN----VIIPVEADYAKHVW 282 (373)
T ss_dssp BTTBCCSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCC-CTT----EECCCCCTTEECCC
T ss_pred cCCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCc----eEeccCCCCCceee
Confidence 001112333322222111 2245666777778888888888 664 23221 1222111
Q ss_pred --e--cCCCHHHHHHHHhcccEEEcCC-----------------------------C--cEEEcc-CChhhHHHHHHHHH
Q 012628 409 --F--TGLNKAQSDNMTNKWHVYMTKD-----------------------------G--RISLAG-LSLAKCEYLADAII 452 (459)
Q Consensus 409 --~--~~l~~~~~~~ll~~~gI~v~~g-----------------------------g--Ris~~~-~~~e~i~~~~~~l~ 452 (459)
+ ...+.+.+.+.++++||.+.++ + |+++.. .|++|+++++++|+
T Consensus 283 ~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~ 362 (373)
T 3frk_A 283 YTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN 362 (373)
T ss_dssp SSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 1 1224544444444469988732 1 676654 38999999999998
Q ss_pred HHHh
Q 012628 453 DSYH 456 (459)
Q Consensus 453 ~~~~ 456 (459)
+...
T Consensus 363 ~~~~ 366 (373)
T 3frk_A 363 AWKL 366 (373)
T ss_dssp TCC-
T ss_pred HHhh
Confidence 7654
No 186
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.93 E-value=7.7e-25 Score=217.90 Aligned_cols=192 Identities=13% Similarity=0.072 Sum_probs=141.9
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~ 199 (459)
+..+..+||+++++++.. ++.|++ + +|++++.++. . .+.+||+|++++|+|..... .++..|+
T Consensus 65 ~~p~~~~l~~~la~~~g~-------~~~i~~--~-sG~~ai~~~~--~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDGA-------KYCLAF--A-SGLAATVTIT--H-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp -CHHHHHHHHHHHHHHTC-------SEEEEE--S-CHHHHHHHHH--T-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred CCchHHHHHHHHHHHhCC-------CcEEEE--C-CHHHHHHHHH--H-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 557788999999999754 245665 5 4568998873 3 46799999999999987444 3467899
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeEEeccCCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQGFASGS 278 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~-~~ii~Deay~~~~~~~ 278 (459)
+++.+|.+ |++.+++++++ +++++++++|+||||.+++ +++|+++|+++| +++|+|++|..+.+..
T Consensus 132 ~v~~v~~~-------d~~~l~~~i~~---~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 132 KISFVDCS-------KIKLLEAAITP---ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp EEEEECTT-------SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred EEEEECCC-------CHHHHHHhcCc---CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 99988762 78999998875 7889999999999999975 888999999999 9999999998876431
Q ss_pred CCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012628 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357 (459)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 357 (459)
.+ + .+.++++.|+||.++.+|. |+||++ ++++++.+.+..... ......+.+.+.++...|+
T Consensus 199 ------~~----~-~~~div~~S~sK~~~g~~~~~~G~v~--~~~~~l~~~l~~~~~----~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 199 ------PL----A-LGADISMYSATKYMNGHSDVVMGLVS--VNCESLHNRLRFLQN----SLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp ------TT----T-TTCSEEEEETTTTTTCSSCCCCEEEE--ECCHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHT
T ss_pred ------cc----c-cCCeEEEEcChhhccCCCCCeEEEEE--ECcHHHHHHHHHHHH----hcCCCCCHHHHHHHHhhhh
Confidence 11 1 2467999999999987764 799984 445675555443322 2222455566666665665
Q ss_pred C
Q 012628 358 N 358 (459)
Q Consensus 358 ~ 358 (459)
.
T Consensus 262 ~ 262 (403)
T 3cog_A 262 T 262 (403)
T ss_dssp T
T ss_pred H
Confidence 4
No 187
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.93 E-value=5.2e-24 Score=211.11 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=187.8
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~ 199 (459)
+.....++++++++++.. + +.++ +.+|++++.++ +...+.+||+|+++.|+|..+... ++..|+
T Consensus 57 ~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 57 GNPTVEQFEEMVCSIEGA-------A-GSAA--FGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhCC-------C-eEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 456778999999999743 2 4555 67788999988 333367999999999999976555 577899
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~ 279 (459)
+++.+|. .|++.+++++++ +++++++++|+||||.+++ +++|.++|++||+++|+|++|..+....
T Consensus 125 ~~~~v~~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~- 190 (389)
T 3acz_A 125 EVDLIDT-------SDVEKVKAAWKP---NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK- 190 (389)
T ss_dssp EEEEECT-------TCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred EEEEECC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC-
Confidence 9988876 388999998875 7889999999999999964 7889999999999999999988765321
Q ss_pred CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCCh-hHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012628 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357 (459)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 357 (459)
.+ + .+.++++.|+||.++.+|.|+ ||+++ ++ +.++.+...... .....+...+.++...|+
T Consensus 191 -----~~----~-~~~di~~~S~sK~~~~~~~~~~G~v~~---~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~l~ 253 (389)
T 3acz_A 191 -----PL----E-LGADIALHSVSKYINGHGDVIGGVSSA---KTAEDIATIKFYRKD----AGSLMAPMDAFLCARGMK 253 (389)
T ss_dssp -----GG----G-TTCSEEEEETTTTTTCSSCCCCEEEEE---SSHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHT
T ss_pred -----cc----c-cCCeEEEECChhhccCCCCceeEEEEE---CcHHHHHHHHHHHHh----cCCCCCHHHHHHHHcCcc
Confidence 11 1 246789999999999999999 99855 55 755555433221 122344455555555554
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CC-----Cccccc----CCcceeeecCC-CHHHHHHHH
Q 012628 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GK-----DWSFIL----RQIGMFSFTGL-NKAQSDNMT 421 (459)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~------~~-----~~~~~~----~~~g~f~~~~l-~~~~~~~ll 421 (459)
.. ....++..++.+.+.+.|+ +.+. |. ++.+.. ..++++.+. + ..+.+.+++
T Consensus 254 ~l----------~~r~~~~~~~~~~l~~~l~-~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~-l~~~~~~~~~l 321 (389)
T 3acz_A 254 TL----------PIRMQIHMENGLKVAKFLE-QHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFE-MKSFEAAKKLM 321 (389)
T ss_dssp TH----------HHHHHHHHHHHHHHHHHHH-HCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE-ESSHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHHHHH-cCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEE-ECCHHHHHHHH
Confidence 32 2222333444555555554 3310 00 112211 125555432 2 256677777
Q ss_pred hcccEEEcC---C-----------------------------C--cEEEccCChhhHHHHHHHHHHHHhh
Q 012628 422 NKWHVYMTK---D-----------------------------G--RISLAGLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 422 ~~~gI~v~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~~~~ 457 (459)
++.||.+.+ | + |||++. ++++.+++.|.++++.
T Consensus 322 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 322 EHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALEL 388 (389)
T ss_dssp TTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHTC
T ss_pred HhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 777876644 2 2 888865 5788889999888865
No 188
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=3.2e-24 Score=214.79 Aligned_cols=323 Identities=15% Similarity=0.140 Sum_probs=189.9
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC-----CCccc----HH-HHHHHHHHHhcCCCCccccCceE
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-----PIEGL----AA-FNKVTAELLFGADNSVLKEQRVA 153 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-----~~~g~----~~-lr~aia~~l~~~~~~~~~~~~i~ 153 (459)
+.++|..+.. + .+|.|.+++.+.+.......|+ +.... .+ .++.+++++... + ..+
T Consensus 33 ~~i~l~~~~~------~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~-~~v 98 (425)
T 3ecd_A 33 SQVELIASEN------I-VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG------H-ANV 98 (425)
T ss_dssp HSEECCTTCC------C-CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred cceeeecccC------C-CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC------C-cee
Confidence 4677765543 2 2899999998877432212221 11111 11 224455554221 2 223
Q ss_pred EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc---hHHHhhhCCCCee--eeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN---HKNIFNDARVPWS--EYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~---~~~~~~~~G~~v~--~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
+ +.||++++.++. ...+.+||+|++++|+|.. +.......|..+. .++.+ ++++.+|++++++.+++ +
T Consensus 99 ~--~~~Gs~a~~~al--~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~ 171 (425)
T 3ecd_A 99 Q--PHSGAQANGAVM--LALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS-RDTMLIDYDQVEALAQQ--H 171 (425)
T ss_dssp C--CSSHHHHHHHHH--HHHCCTTCEEEEECC------------------CEEEEECCC-TTTSSCCHHHHHHHHHH--H
T ss_pred e--cCchHHHHHHHH--HHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCC-cccCccCHHHHHHHHhh--c
Confidence 4 788899998884 3347799999999999987 3333334555444 55543 34688999999999974 1
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC-CCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (459)
+++++++++|+||+ . .++++|.++|++||+++|+||+| .++.+.+.. ... ... .++++.||||.+
T Consensus 172 ~~~~v~~~~~~~~~--~---~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~--~~~----~~~--~di~~~s~sK~l- 237 (425)
T 3ecd_A 172 KPSLIIAGFSAYPR--K---LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRH--ANP----VEH--AHVVTSTTHKTL- 237 (425)
T ss_dssp CCSEEEEECSCCCS--C---CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS--CCG----GGT--CSEEEEESSGGG-
T ss_pred CCcEEEEccccCCC--c---CCHHHHHHHHHHcCCEEEEECcChHhhhhcccc--cCc----hhc--CcEEEecCCccc-
Confidence 56677778899974 3 55789999999999999999994 332222110 001 111 248899999988
Q ss_pred cCCCCcceEEEEeCChhHHHHHHHHHHhhcccc-ccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS 386 (459)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (459)
+|+|.||+++ .+++..+.+.. ..... ..+++...+.++...+.. . ..+.+++.+++++++++++.+.
T Consensus 238 -~g~~~g~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~a~~~--~---~~~~~~~~~~~~~~~~~~l~~~ 305 (425)
T 3ecd_A 238 -RGPRGGFVLT--NDEEIAKKINS----AVFPGLQGGPLMHVIAGKAVAFGE--A---LTDDFKTYIDRVLANAQALGDV 305 (425)
T ss_dssp -CCCSCEEEEE--SCHHHHHHHHH----HHC-----CCCHHHHHHHHHHHHH--H---TSHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCcEEEEe--CCHHHHHHHHh----hhCccccCCccHHHHHHHHHHHHH--H---HHHhHHHHHHHHHHHHHHHHHH
Confidence 6789999854 44553333332 21121 113333322222222211 0 0133567888999999999999
Q ss_pred HhhccCCCCCcccccC-CcceeeecC-----CCHHHHHHHHhcccEEEc----CC--------C--cEEEccC-----Ch
Q 012628 387 LSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD--------G--RISLAGL-----SL 441 (459)
Q Consensus 387 L~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g--------g--Ris~~~~-----~~ 441 (459)
|. +.| +++..+ .+++++|+. .+.+.+.++++++||.+. |+ + ||++... ++
T Consensus 306 L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~ 380 (425)
T 3ecd_A 306 LK-AGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGA 380 (425)
T ss_dssp HH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCH
T ss_pred HH-hCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCH
Confidence 99 776 465543 345566653 356666666677899998 54 1 7764322 47
Q ss_pred hhHHHHHHHHHHHHhhc
Q 012628 442 AKCEYLADAIIDSYHNV 458 (459)
Q Consensus 442 e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++|++++++.
T Consensus 381 e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 381 AEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999988753
No 189
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.93 E-value=1.9e-24 Score=215.20 Aligned_cols=322 Identities=15% Similarity=0.163 Sum_probs=203.7
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCC------CCcccHHHH----HHHHHHHhcCCCCccccCce
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRV 152 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr----~aia~~l~~~~~~~~~~~~i 152 (459)
+.+++++.+.| .++.+.+++.+.+.......|+ ......+++ +++++++... ++.+
T Consensus 24 ~~~~~~~~~~~--------~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~------~~~i 89 (405)
T 2vi8_A 24 AKIELIASENF--------VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE------HANV 89 (405)
T ss_dssp HSEECCTTCCC--------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEEC
T ss_pred cceeeccCccc--------CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceEE
Confidence 34666654433 2889999998887432112221 112234444 5788876432 3444
Q ss_pred EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-H--hhhCCC--CeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012628 153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-I--FNDARV--PWSEYRYYDPKTVGLDFEGMIADIKAAP 227 (459)
Q Consensus 153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~-~--~~~~G~--~v~~v~~~~~~~~~~d~e~l~~~i~~~~ 227 (459)
++ ++| ++++.++.+. .+.+||+|++++|+|..+.. . +...|. +++.++++ ++++.+|++++++++++.
T Consensus 90 ~~--~sG-t~a~~~a~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~~- 162 (405)
T 2vi8_A 90 QP--HSG-AQANMAVYFT--VLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARLH- 162 (405)
T ss_dssp CC--SSH-HHHHHHHHHH--HCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHHH-
T ss_pred Ee--cCc-HHHHHHHHHH--hcCCCCEEEEecccccchhcccchhhhccceeEEEecccc-cccCCcCHHHHHHHHHhc-
Confidence 44 555 9999998443 36799999999999987753 1 123343 66666663 246789999999999751
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012628 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (459)
Q Consensus 228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (459)
+++++++ +|+|. |.. .++++|.++|++||+++|+||+|....... +..... +. ...++++||||.++
T Consensus 163 -~~~~v~~-~~~~~-~~~---~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~----~~--~~di~~~s~sK~~~ 229 (405)
T 2vi8_A 163 -RPKLIVA-AAAAY-PRI---IDFAKFREIADEVGAYLMVDMAHIAGLVAA-GLHPNP----VP--YAHFVTTTTHKTLR 229 (405)
T ss_dssp -CCSEEEE-CCSSC-CSC---CCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSCCS----TT--TCSEEEEESSSTTC
T ss_pred -CCeEEEE-eCCCC-Ccc---CCHHHHHHHHHHcCCEEEEEcccccccccc-CcCCCc----cc--cCCEEEEeccccCC
Confidence 3455555 44554 344 358899999999999999999987321110 011111 11 23488999999997
Q ss_pred -cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHH-HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 308 -LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIV-ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 385 (459)
Q Consensus 308 -~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (459)
++| ||+++ ++++.+.+..... ....+.+...+.++ ...+... . .+.+++.+++++++++++.+
T Consensus 230 g~~g---G~~~~---~~~~~~~l~~~~~----~~~~~~~~~~~~aa~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~ 294 (405)
T 2vi8_A 230 GPRG---GMILC---QEQFAKQIDKAIF----PGIQGGPLMHVIAAKAVAFGEA--L---QDDFKAYAKRVVDNAKRLAS 294 (405)
T ss_dssp CCSC---EEEEE---CHHHHHHHHHHHT----TTTCSSCCHHHHHHHHHHHHHH--H---SHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---eEEEE---cHHHHHHHHhhhc----ccccCCCCHHHHHHHHHHHHHH--H---hhhHHHHHHHHHHHHHHHHH
Confidence 666 99866 6775554433221 22223322333333 2333210 0 12467888999999999999
Q ss_pred HHhhccCCCCCcccccC-CcceeeecCC-----CHHHHHHHHhcccEEEcCC------------C--cEEEcc-----CC
Q 012628 386 SLSAKDKSGKDWSFILR-QIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG-----LS 440 (459)
Q Consensus 386 ~L~~~~g~~~~~~~~~~-~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~-----~~ 440 (459)
.|+ ++| +++..+ .+++++|+.+ +.+.+...+.++||.+.+| + |||++. .+
T Consensus 295 ~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~ 369 (405)
T 2vi8_A 295 ALQ-NEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFG 369 (405)
T ss_dssp HHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCC
T ss_pred HHH-hCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCC
Confidence 999 776 566654 3567777643 4444444445579998863 2 999884 57
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 012628 441 LAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 441 ~e~i~~~~~~l~~~~~~~ 458 (459)
++++++++++|+++++++
T Consensus 370 ~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 370 LEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999998764
No 190
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.93 E-value=1.5e-24 Score=219.37 Aligned_cols=285 Identities=13% Similarity=0.015 Sum_probs=188.2
Q ss_pred HHHHHHHHHHhcCCCCccccCceEEeecccchh-HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeec
Q 012628 130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTG-SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD 208 (459)
Q Consensus 130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~-a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~ 208 (459)
++|+.+++++ |.+ ++ +++ |+|||+ ++.++...+..+.+|+.|+++++.|..+...++..|++++.++..+
T Consensus 137 ~~~~~la~~~----g~~--~~-~~~--t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~ 207 (456)
T 2z67_A 137 KILESFFKQL----GLN--VH-AIA--TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL 207 (456)
T ss_dssp HHHHHHHHHT----TCC--CE-EEE--ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHc----CCC--CC-EEE--eCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence 3555556554 332 33 778 999995 4443422222222678899999999999999999999999988642
Q ss_pred -CCCCCCCHHHHHHHH-HcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012628 209 -PKTVGLDFEGMIADI-KAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285 (459)
Q Consensus 209 -~~~~~~d~e~l~~~i-~~~-~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~ 285 (459)
++++.+|++++++++ ++. ..+++++++++||||||.+ +++++|+++|+++|+++++|+||..+..+ ...
T Consensus 208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i---~~l~~I~~la~~~g~~v~vD~A~~~~~~g-----~~~ 279 (456)
T 2z67_A 208 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNS---DDIVEIAKICENYDIPHIINGAYAIQNNY-----YLE 279 (456)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH-----HHH
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCc---CCHHHHHHHHHHcCCcEEEECcchHHHHH-----hhH
Confidence 346789999999999 420 1267778789999999999 78889999999999999999998876531 101
Q ss_pred H-HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHH
Q 012628 286 V-RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDE 364 (459)
Q Consensus 286 ~-~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 364 (459)
. ...... ..++++.|++|.++ .++++||++ +++++.++.+ .....+.....+.+++.++...+.
T Consensus 280 ~~~~~~~~-~~D~~~~s~hK~~~-~p~g~G~l~--~~~~~~~~~l----~~~~~g~~~~~~~~~~~aal~~l~------- 344 (456)
T 2z67_A 280 KLKKAFKY-RVDAVVSSSDKNLL-TPIGGGLVY--STDAEFIKEI----SLSYPGRASATPVVNTLVSLLSMG------- 344 (456)
T ss_dssp HHHHHHTS-CCSEEEEEHHHHHC-CCSSCEEEE--ESCHHHHHHH----HTTSCSCBCSHHHHHHHHHHHHHH-------
T ss_pred HHHHhhCC-CCCEEEEcCCCCcC-CCCCeEEEE--EcCHHHHhhc----CcCCCCCCCCCHHHHHHHHHHHHH-------
Confidence 1 111111 34567899999755 568899994 4556644333 322111111223444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcccccCCcceeeecCC--C---HHHHHHHHhcccE---EEc---
Q 012628 365 WKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHV---YMT--- 429 (459)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI---~v~--- 429 (459)
.+.++++.+++.++++++.+.|+ ++ | +.+..++ +++.| .+ + .++.++|.++ || .+.
T Consensus 345 -~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~v~~~~-~~v~~-~~~~~~~~~~l~~~L~~~-gi~~~rv~~~~ 415 (456)
T 2z67_A 345 -SKNYLELVKNQKNSKKLLDELLN-DLSKKTG----GKFLDVE-SPIAS-CISVNSDPVEIAAKLYNL-RVTGPRGIKKT 415 (456)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHSS----CCBCCCC-CSSEE-EEECSSCHHHHHHHHHHT-TEESCEEECTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-hcccccC----CEecCCC-CeEEE-EEecccHHHHHHHHHHHc-CCCcceEEeec
Confidence 23467888999999999999998 76 5 3555565 44332 22 2 3556666664 65 343
Q ss_pred -----------CCC--cEEEcc-CChhhHHHHHHHHHHHH
Q 012628 430 -----------KDG--RISLAG-LSLAKCEYLADAIIDSY 455 (459)
Q Consensus 430 -----------~gg--Ris~~~-~~~e~i~~~~~~l~~~~ 455 (459)
+.+ |+|++. .+++++++++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 223 888773 38999999999998765
No 191
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.93 E-value=3.8e-24 Score=213.32 Aligned_cols=214 Identities=9% Similarity=0.011 Sum_probs=151.9
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh----CCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----ARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~G~ 199 (459)
+.....+|++.++++.. .+++++ ++||++++.++ +...+.+||+|++++|+|..+...++. .|+
T Consensus 79 ~~p~~~~l~~~la~~~g--------~~~~~~--~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 146 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEG--------APAAFA--TASGMAAVFTS--LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV 146 (414)
T ss_dssp CCHHHHHHHHHHHHHHT--------CSEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred CChHHHHHHHHHHHHHC--------CCcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCc
Confidence 34456778888888753 245777 89999999987 444467999999999999988776654 899
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~ 279 (459)
+++.+|.+ |++++++++++ +++++++++|+||||.+ .++++|+++|++||+++|+|++|.......
T Consensus 147 ~~~~v~~~-------d~~~l~~ai~~---~t~~v~le~p~NptG~~---~~l~~i~~la~~~g~~livDe~~~~~~~~~- 212 (414)
T 3ndn_A 147 QTVFVDGD-------DLSQWERALSV---PTQAVFFETPSNPMQSL---VDIAAVTELAHAAGAKVVLDNVFATPLLQQ- 212 (414)
T ss_dssp EEEEECTT-------CHHHHHHHTSS---CCSEEEEESSCTTTCCC---CCHHHHHHHHHHTTCEEEEECTTTHHHHCC-
T ss_pred EEEEeCCC-------CHHHHHHhcCC---CCeEEEEECCCCCCCcc---ccHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 99998862 89999999976 67788889999999999 457889999999999999999987332110
Q ss_pred CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHH-HHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012628 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAA-RVKSQLKRLARPMYSNPPVHGARIVANVVG 357 (459)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 357 (459)
. . ..+.++++.|+||.++.+| +|+|++++ +++.+. .+...... .....+...+.++...++
T Consensus 213 -----~----~-~~g~div~~S~sK~l~~~G~~~~G~vv~---~~~~~~~~l~~~~~~----~g~~~~~~~a~~~~~~l~ 275 (414)
T 3ndn_A 213 -----G----F-PLGVDVVVYSGTKHIDGQGRVLGGAILG---DREYIDGPVQKLMRH----TGPAMSAFNAWVLLKGLE 275 (414)
T ss_dssp -----C----G-GGTCSEEEEETTTTTTCSSCCCCEEEEE---CHHHHTTHHHHHHHH----HCCCCCHHHHHHHHHHGG
T ss_pred -----c----h-hcCCCeEeccCCccccCCCCceEEEEEE---CHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHH
Confidence 0 1 1234688999999999888 89999865 666443 33322221 122334433333332222
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
.+....++..++++.+.+.|+ +.
T Consensus 276 ----------~l~~r~~~~~~~a~~l~~~L~-~~ 298 (414)
T 3ndn_A 276 ----------TLAIRVQHSNASAQRIAEFLN-GH 298 (414)
T ss_dssp ----------GHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHh-cC
Confidence 134455666777788888887 65
No 192
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.5e-24 Score=218.95 Aligned_cols=322 Identities=16% Similarity=0.130 Sum_probs=203.2
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC---cccHHHH-------HHHHHHHhcCCCCccccCceE
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EGLAAFN-------KVTAELLFGADNSVLKEQRVA 153 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g~~~lr-------~aia~~l~~~~~~~~~~~~i~ 153 (459)
+.|+|..+.. + ++|.|.+++.+.+.+.....|+.. .|.+.++ +.+++++... . ..+
T Consensus 46 ~~i~l~~~~~------~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~------~-~~v 111 (447)
T 3h7f_A 46 DTLEMIASEN------F-VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE------F-ANV 111 (447)
T ss_dssp HSEECCTTCC------C-CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred CceeEecCCC------C-CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC------c-eEE
Confidence 5688865432 2 389999999887753322334321 2333332 5555554221 2 233
Q ss_pred EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhC--CCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~--G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
+ +++|++++..+ +...+.+||+|++++|+|..+.. .+... +.++++++++ ++++.+|+++++++++..
T Consensus 112 ~--~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~~-- 184 (447)
T 3h7f_A 112 Q--PHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD-PATHLIDMDAVRATALEF-- 184 (447)
T ss_dssp C--CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC-TTTCSCCHHHHHHHHHHH--
T ss_pred E--eCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC-cccCCcCHHHHHHHHHhc--
Confidence 2 57788899887 44457799999999999877321 11222 3345556653 346789999999999642
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcc
Q 012628 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (459)
+++++++++|+||++. ++++|.++|++||+++|+||+|. ++.+.+.... . .. ...+++.|+||.++
T Consensus 185 ~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~----~~--~~di~~~s~sK~l~ 251 (447)
T 3h7f_A 185 RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--P----VP--HADVVSTTVHKTLG 251 (447)
T ss_dssp CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--S----TT--TCSEEEEESSGGGC
T ss_pred CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--C----CC--CCcEEEecCCcCCC
Confidence 4567777899999986 68899999999999999999963 3322211000 0 01 22477999999874
Q ss_pred cCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL 387 (459)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 387 (459)
|+|.||+++ +++..+.+...... ...++++...+.++...+.. .. .+.+++..+++.++++++.+.|
T Consensus 252 --G~~gG~i~~---~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~a~~~--~~---~~~~~~~~~~~~~~~~~l~~~L 318 (447)
T 3h7f_A 252 --GGRSGLIVG---KQQYAKAINSAVFP---GQQGGPLMHVIAGKAVALKI--AA---TPEFADRQRRTLSGARIIADRL 318 (447)
T ss_dssp --CCSCEEEEE---CGGGHHHHHHHHTT---TTCSSCCHHHHHHHHHHHHH--TT---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCeEEEEE---CHHHHHHHhhhcCC---cccCCccHHHHHHHHHHHHH--hh---CHHHHHHHHHHHHHHHHHHHHH
Confidence 899999866 77755555433221 22223333322222222211 00 1234677888889999999999
Q ss_pred hhcc-----CCCCCccccc-CCcceeeecC-----CCHHHHHHHHhcccEEEc----CC---------C-cEEEcc----
Q 012628 388 SAKD-----KSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD---------G-RISLAG---- 438 (459)
Q Consensus 388 ~~~~-----g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g---------g-Ris~~~---- 438 (459)
+ +. | +++.. +.+++++|+. ++.+.+..+++++||.+. |+ + ||+...
T Consensus 319 ~-~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~ 393 (447)
T 3h7f_A 319 M-APDVAKAG----VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATR 393 (447)
T ss_dssp T-SHHHHHTT----CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHH
T ss_pred H-hccccCCC----eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhC
Confidence 8 76 6 45443 2345565553 366778888887899988 43 1 887542
Q ss_pred -CChhhHHHHHHHHHHHHhh
Q 012628 439 -LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 439 -~~~e~i~~~~~~l~~~~~~ 457 (459)
.+++++++++++|.+++++
T Consensus 394 ~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 394 GFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp TCCHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 4789999999999998864
No 193
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.92 E-value=3.1e-24 Score=214.60 Aligned_cols=312 Identities=15% Similarity=0.163 Sum_probs=187.7
Q ss_pred CcHHHHHHHHHHhhcCCCCCCC------CCcccHHHH----HHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHH
Q 012628 102 VLDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALI 171 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~------~~~g~~~lr----~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~ 171 (459)
.+|.|.+++.+.+.......|+ .....+.+. +.+++++.. ++++|++ ++| ++++.++ +.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~v~~--~sG-s~a~~~a--~~ 110 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA------DYANVQP--HSG-SQANFAV--YT 110 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC------SEEECCC--SSH-HHHHHHH--HH
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC------CCceeEe--cCc-HHHHHHH--HH
Confidence 3889999998877432212221 222223333 455555432 2566655 555 8898887 44
Q ss_pred HHhCCCCEEEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCH
Q 012628 172 ERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTP 248 (459)
Q Consensus 172 ~~~~~gd~Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~ 248 (459)
..+.+||+|+++.|+|..+. ..+...|..+..+++..++++.+|++++++++++. +++++++++|+||+ .
T Consensus 111 ~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~--~--- 183 (420)
T 3gbx_A 111 ALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH--KPKMIIGGFSAYSG--V--- 183 (420)
T ss_dssp HHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH--CCSEEEECCTTCCS--C---
T ss_pred HhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc--CCeEEEEecCccCC--c---
Confidence 44779999999999997743 22233344444333322456789999999999862 46677888899974 4
Q ss_pred HHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCCh---h
Q 012628 249 EQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS---D 324 (459)
Q Consensus 249 ~~l~~i~~l~~~~~~~ii~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~---~ 324 (459)
.++++|.++|++||+++|+||+|.. +...+. ... ... ..++++.|+||.++ |.|.||+++ ++ +
T Consensus 184 ~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~---~~~---~~~--~~di~~~s~sK~~~--g~~gg~~~~---~~~~~~ 250 (420)
T 3gbx_A 184 VDWAKMREIADSIGAYLFVDMAHVAGLIAAGV---YPN---PVP--HAHVVTTTTHKTLA--GPRGGLILA---KGGDEE 250 (420)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTHHHHHTTS---SCC---STT--TSSEEEEESSGGGC--SCSCEEEEE---SSCCHH
T ss_pred cCHHHHHHHHHHcCCEEEEECCcchhceeccc---CCc---ccc--cCCEEEeecccCCC--CCCceEEEE---cCCcHH
Confidence 3488999999999999999999642 221110 000 011 24588999999985 555688855 54 5
Q ss_pred HHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-C
Q 012628 325 LAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-Q 403 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~ 403 (459)
..+.+.... ..+...+++...+.++...+.. .. .+++++.+++++++++++.+.|+ +.| +++..+ .
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~a~~~a~~~--~~---~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~ 317 (420)
T 3gbx_A 251 LYKKLNSAV---FPSAQGGPLMHVIAGKAVALKE--AM---EPEFKVYQQQVAKNAKAMVEVFL-NRG----YKVVSGGT 317 (420)
T ss_dssp HHHHHHHHH---C----CCCCHHHHHHHHHHHHH--TT---SHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSC
T ss_pred HHHHhhhhc---CCCCCCCcchhHHHHHHHHHHH--HH---hHhHHHHHHHHHHHHHHHHHHHH-hcC----CeeccCCC
Confidence 333332221 1111223444333333222211 00 13357788899999999999999 776 455543 3
Q ss_pred cceeeecC-----CCHHHHHHHHhcccEEEcC-------C------C-cEEEcc-----CChhhHHHHHHHHHHHHhh
Q 012628 404 IGMFSFTG-----LNKAQSDNMTNKWHVYMTK-------D------G-RISLAG-----LSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 404 ~g~f~~~~-----l~~~~~~~ll~~~gI~v~~-------g------g-Ris~~~-----~~~e~i~~~~~~l~~~~~~ 457 (459)
.++++|+. .+.+.+..+++++||.+.+ + + ||++.. .+++++++++++|++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 318 ENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp SSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 45555543 3566677667778999987 2 1 888753 3579999999999998865
No 194
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.92 E-value=5.7e-23 Score=206.06 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=150.9
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----hhhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~G~ 199 (459)
+.....++++.+++++.. ++.|++ .+|+++++++ +...+.+||+|+++.|.|..+... ++..|+
T Consensus 112 ~~~~~~~l~~~lA~l~g~-------~~~v~~---~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 179 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGA-------ESTLLM---ASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI 179 (445)
T ss_dssp CCHHHHHHHHHHHHHHTC-------SEEEEE---SCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred CChHHHHHHHHHHHHhCC-------CcEEEe---CCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 345567999999999743 244555 5556999998 444477999999999999876663 567899
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGS-FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~-~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~ 278 (459)
+++.+|.+ |++++++++++ ++ +++++++|+||||.+. ++++|+++|++||+++|+|++|.......
T Consensus 180 ~v~~v~~~-------d~~~l~~ai~~---~tv~lV~le~p~NptG~v~---dl~~I~~la~~~g~~livD~a~~~~~~~~ 246 (445)
T 1qgn_A 180 TATVIDPA-------DVGALELALNQ---KKVNLFFTESPTNPFLRCV---DIELVSKLCHEKGALVCIDGTFATPLNQK 246 (445)
T ss_dssp EEEEECSS-------CHHHHHHHHHH---SCEEEEEEESSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTTCC
T ss_pred EEEEeCCC-------CHHHHHHHhcc---CCCCEEEEeCCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99988762 89999999987 67 8899999999999995 47789999999999999999987543211
Q ss_pred CCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012628 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357 (459)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 357 (459)
. . ..+.++++.|+||.+|.+| .++||+++ ++++++.+...... .....+...+.++...++
T Consensus 247 ----~--~-----~~g~Div~~S~sK~~gg~gd~~~G~l~~---~~~l~~~l~~~~~~----~g~~~~~~~a~~~~~~l~ 308 (445)
T 1qgn_A 247 ----A--L-----ALGADLVLHSATKFLGGHNDVLAGCISG---PLKLVSEIRNLHHI----LGGALNPNAAYLIIRGMK 308 (445)
T ss_dssp ----T--T-----TTTCSEEEECTTTTTTCSSSCCCEEEEE---CHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHGG
T ss_pred ----c--c-----ccCCEEEEECCcccccccccceEEEEEE---CHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhHH
Confidence 1 0 1235688999999999666 47999876 77766555433221 111233333333333332
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
.+....+++.++++.+.+.|+ +.
T Consensus 309 ----------~l~~r~~~~~~~a~~l~~~L~-~~ 331 (445)
T 1qgn_A 309 ----------TLHLRVQQQNSTALRMAEILE-AH 331 (445)
T ss_dssp ----------GHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHh-cC
Confidence 123444555666788888887 65
No 195
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.92 E-value=1.2e-23 Score=208.75 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=157.3
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~ 199 (459)
+.....++++.+++++.. +++++ ++||++|++++. ...+.+||+|+++.|+|..+...+ +..|+
T Consensus 64 ~~~~~~~l~~~la~~~g~--------~~~~~--~~sGt~A~~~al--~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 131 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDA--------AFGRA--FSSGMAAADCAL--RAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131 (392)
T ss_dssp CCHHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred CChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence 556678999999999643 35777 899999999984 444779999999999998776655 67899
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~ 279 (459)
+++.+|.+ |++.+++++++ +++++++++|+||||.+ .++++|+++|++||+++|+|++|......
T Consensus 132 ~~~~v~~~-------d~~~l~~~i~~---~~~~v~~~~~~nptG~~---~~l~~i~~la~~~g~~li~D~~~~~~~~~-- 196 (392)
T 3qhx_A 132 EYTPVALA-------DLDAVRAAIRP---TTRLIWVETPTNPLLSI---ADIAGIAQLGADSSAKVLVDNTFASPALQ-- 196 (392)
T ss_dssp EEEEECTT-------CHHHHHHHCCT---TEEEEEEESSCTTTCCC---CCHHHHHHHHHHHTCEEEEECTTTCTTTC--
T ss_pred EEEEeCCC-------CHHHHHHhhCC---CCeEEEEECCCCCCcEE---ecHHHHHHHHHHcCCEEEEECCCcccccC--
Confidence 99888762 89999999875 78899999999999999 45889999999999999999998755322
Q ss_pred CCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCC
Q 012628 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGN 358 (459)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 358 (459)
... ....++++.|+||.++.+| .|.||+++ ++++..+.+.... .......+...+.++...++.
T Consensus 197 --~~~-------~~~~di~~~S~sK~lg~~g~~~~G~v~~--~~~~~~~~l~~~~----~~~g~~~~~~~~~~~~~~l~~ 261 (392)
T 3qhx_A 197 --QPL-------SLGADVVLHSTTKYIGGHSDVVGGALVT--NDEELDQSFAFLQ----NGAGAVPGPFDAYLTMRGLKT 261 (392)
T ss_dssp --CGG-------GGTCSEEEEETTTTTTCSSCCCCEEEEE--SCHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHTT
T ss_pred --ChH-------HhCCcEEEEcCccccCCCCCceEEEEEE--CcHHHHHHHHHHH----HhcCCCCCHHHHHHHHhhhhH
Confidence 111 1235688999999999888 78999844 4466554443322 222334555565665555543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 359 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
+....++..++.+.+.+.|+ +.
T Consensus 262 ----------l~~~~~~~~~~~~~l~~~L~-~~ 283 (392)
T 3qhx_A 262 ----------LVLRMQRHSENAAAVAEFLA-EH 283 (392)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHH-TC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHh-cC
Confidence 23344555666677777777 54
No 196
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.92 E-value=3.7e-23 Score=206.54 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=136.6
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEE
Q 012628 103 LDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180 (459)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~V 180 (459)
++.+.+++. ... .+.|+.. ....++++.+++++.. +++++ ++||+++++++. ...+.+||+|
T Consensus 35 ~~~~~~~~~---~~~-~~~y~~~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a~~~al--~~l~~~gd~v 98 (412)
T 2cb1_A 35 LEEGQERFA---TGE-GYVYARQKDPTAKALEERLKALEGA--------LEAVV--LASGQAATFAAL--LALLRPGDEV 98 (412)
T ss_dssp HHHHHHHHH---HCC-SCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHHH--HTTCCTTCEE
T ss_pred hHHHHHHhc---ccc-CcCcCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHHH--HHHhCCCCEE
Confidence 455555543 222 3567643 6788999999999743 36888 999999999983 3336799999
Q ss_pred EEcCCCCcchHHH----hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012628 181 LISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 181 lv~~p~y~~~~~~----~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~ 256 (459)
+++.|+|..+... ++..|++++.+|. |++++++++++ +++++++++|+||||.++ ++++|++
T Consensus 99 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~---~l~~i~~ 164 (412)
T 2cb1_A 99 VAAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSA---KTRAVFVETVANPALLVP---DLEALAT 164 (412)
T ss_dssp EEETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCT---TEEEEEEESSCTTTCCCC---CHHHHHH
T ss_pred EEeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhcc---CCeEEEEeCCCCCCcccc---cHHHHHH
Confidence 9999999865554 4567888888875 38899998875 788999999999999996 5889999
Q ss_pred HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 257 l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
+|++||+++|+|++|..+.+.. . .. ..+.++++.|+||.++.+|+|+|++++
T Consensus 165 l~~~~~~~li~D~~~~~~~~~~---~--~~-----~~~~di~~~S~~K~~~~~~~~~G~~~~ 216 (412)
T 2cb1_A 165 LAEEAGVALVVDNTFGAAGALC---R--PL-----AWGAHVVVESLTKWASGHGSVLGGAVL 216 (412)
T ss_dssp HHHHHTCEEEEECGGGTTTTSC---C--GG-----GGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred HHHHcCCEEEEECCCccccccC---C--cc-----ccCCeEEEECCcccccCCCCcEEEEEE
Confidence 9999999999999988763211 1 11 124678999999999989999999965
No 197
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.92 E-value=1.2e-23 Score=215.36 Aligned_cols=360 Identities=11% Similarity=0.029 Sum_probs=229.6
Q ss_pred cchhHHHhhhCCCCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc
Q 012628 70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE 149 (459)
Q Consensus 70 i~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~ 149 (459)
..++.+.+...--+..+++....|++....++.++.+.+++.....+.....|....+..++.+.+.+++....|.+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~ 158 (497)
T 2qma_A 80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EK 158 (497)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CC
Confidence 33444444332234566777778888777777788888887655433223456554566666666555554444442 13
Q ss_pred CceEEeecccchhHHHHHHHHHHH--h---------CC------CC-EEEEcCCCCcchHHHhhhCCC---Ceeeeeeec
Q 012628 150 QRVATVQGLSGTGSLRLAAALIER--Y---------FP------GA-KVLISSPTWGNHKNIFNDARV---PWSEYRYYD 208 (459)
Q Consensus 150 ~~i~~~~t~ggt~a~~l~~~~~~~--~---------~~------gd-~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~ 208 (459)
+++++ |+|||+++.++....+. + .+ |+ .|+++.++|..+...++..|. +++.+|++
T Consensus 159 ~~~~~--t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~- 235 (497)
T 2qma_A 159 ADGIF--TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN- 235 (497)
T ss_dssp CEEEE--ESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-
T ss_pred CCeEE--cCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC-
Confidence 67888 99999999998554321 2 12 46 899999999999888888876 78999983
Q ss_pred CCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012628 209 PKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285 (459)
Q Consensus 209 ~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~ 285 (459)
+++.+|+++|++++++. ..++.++++++++||||.+ +++++|+++|++||+++++|++|..+.... +
T Consensus 236 -~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~---~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~--- 305 (497)
T 2qma_A 236 -ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAI---DDLDFIADMAVKHDMWMHVDGAYGGALILS---S--- 305 (497)
T ss_dssp -TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGS---T---
T ss_pred -CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhhHHHHhC---c---
Confidence 46889999999999752 1123477788999999998 889999999999999999999998776421 1
Q ss_pred HHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccc--cC-----------CchHHHHH
Q 012628 286 VRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMY--SN-----------PPVHGARI 351 (459)
Q Consensus 286 ~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~ 351 (459)
.+..... ...++++.|++|.++.| +++|+++ ++++..++.+............ .+ ...+.+.+
T Consensus 306 ~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~ 382 (497)
T 2qma_A 306 HKSRLKGVERAHSISVDFHKLFYQT-ISCGALL--VNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFM 382 (497)
T ss_dssp TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEE--ESCGGGGGGGCC--------------------CCSCCCTHHHHHH
T ss_pred chHhhcCcccCCEEEEcchhccCCC-cceEEEE--EeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHH
Confidence 1111111 12347788999988855 6899995 4555422222100000000000 00 01222233
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc-cCCcceeeec--CC--C-----HHHHHHHH
Q 012628 352 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL--N-----KAQSDNMT 421 (459)
Q Consensus 352 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~g~f~~~--~l--~-----~~~~~~ll 421 (459)
+...+. .+.++++.++..++++++.+.|+ +++ +++++ .++.+++.|. +. . .++.+.+.
T Consensus 383 ~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~ 450 (497)
T 2qma_A 383 TMQNVG--------PKALGDMYDHLLAQTLEVADMIR-TND---QFELLAEPSLSTVLFRATHETADLDELNKALRLEAL 450 (497)
T ss_dssp HHHHTC--------HHHHHHHHHHHHHHHHHHHHHHH-TCT---TEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHhC--------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHH
Confidence 333332 13356778888899999999999 762 15653 4566655543 21 1 23345555
Q ss_pred hcccEEEcCC----C----cEEEc--cCChhhHHHHHHHHHHHHhhcC
Q 012628 422 NKWHVYMTKD----G----RISLA--GLSLAKCEYLADAIIDSYHNVS 459 (459)
Q Consensus 422 ~~~gI~v~~g----g----Ris~~--~~~~e~i~~~~~~l~~~~~~~~ 459 (459)
+ .|+.+.++ | ||++. ..+++++++++++|++++++++
T Consensus 451 ~-~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~~ 497 (497)
T 2qma_A 451 T-RGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVELV 497 (497)
T ss_dssp H-HTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred h-CCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhC
Confidence 5 48877642 3 99984 2388999999999999988764
No 198
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=7.4e-24 Score=210.17 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=150.5
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~ 199 (459)
+..+..++|+++|+++.. ++ .++ +.+|+++++++. . .+.+||+|+++.|+|..... .++..|+
T Consensus 53 ~~~~~~~lr~~la~~~g~-------~~-~i~--~~sGt~a~~~al--~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 119 (393)
T 1n8p_A 53 QNPNRENLERAVAALENA-------QY-GLA--FSSGSATTATIL--Q-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119 (393)
T ss_dssp CCHHHHHHHHHHHHHTTC-------SE-EEE--ESCHHHHHHHHH--H-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred CChhHHHHHHHHHHHhCC-------Cc-EEE--ECChHHHHHHHH--H-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 456788999999999643 23 444 456699999984 3 46799999999999984433 4567899
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----CCeeEEeccCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK----NHIPFFDVAYQGFA 275 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~----~~~ii~Deay~~~~ 275 (459)
+++.+|++ | +++++++++ +++++++++||||||.+++ +++|+++|++| |+++|+|++|..+.
T Consensus 120 ~v~~v~~~-------d-~~l~~~i~~---~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~ 185 (393)
T 1n8p_A 120 ETSFTNDL-------L-NDLPQLIKE---NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPY 185 (393)
T ss_dssp CCEEESSH-------H-HHHHHHSCS---SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred EEEEeCCC-------h-HHHHHhccc---CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence 99998873 6 888888875 7889999999999999964 78899999999 99999999988765
Q ss_pred CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHH
Q 012628 276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVAN 354 (459)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (459)
.. +.. ..+.++++.|+||.+|++|+|+ ||++ +++++.++.+...... .....+...+.++..
T Consensus 186 ~~----~~~-------~~~~di~~~S~sK~~g~~G~rigG~~~--~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~ 248 (393)
T 1n8p_A 186 IS----NPL-------NFGADIVVHSATKYINGHSDVVLGVLA--TNNKPLYERLQFLQNA----IGAIPSPFDAWLTHR 248 (393)
T ss_dssp HC----CGG-------GGTCSEEEEETTTTTTCSSCCCCEEEE--ESCHHHHHHHHHHHHH----HCCCCCHHHHHHHHH
T ss_pred cC----CHH-------HcCCeEEEEECcccccCCCCceeEEEE--eCCHHHHHHHHHHHHh----cCCCCCHHHHHHHHh
Confidence 42 111 1146799999999999999999 8873 4456755555443221 112334444444444
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 355 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 355 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
.++. +....++..++++.+.+.|+ +.
T Consensus 249 ~l~~----------~~~~~~~~~~~~~~l~~~L~-~~ 274 (393)
T 1n8p_A 249 GLKT----------LHLRVRQAALSANKIAEFLA-AD 274 (393)
T ss_dssp HHTT----------HHHHHHHHHHHHHHHHHHHT-SC
T ss_pred ccch----------HHHHHHHHHHHHHHHHHHHH-hC
Confidence 4432 23334445556666666776 54
No 199
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.92 E-value=9.3e-24 Score=215.96 Aligned_cols=323 Identities=12% Similarity=0.063 Sum_probs=216.0
Q ss_pred ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCce-EEeecccchhHHHHHHHHHHHhCC--
Q 012628 100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQGLSGTGSLRLAAALIERYFP-- 176 (459)
Q Consensus 100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i-~~~~t~ggt~a~~l~~~~~~~~~~-- 176 (459)
.++++.+.+++.+.+.... ..|....+..++++.+.+++....|.+.+++++ .-..|+||++++.++. ++...+
T Consensus 66 ~~~~~~v~~~l~~~~~~~~-~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~--~a~~~~~~ 142 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNY-VDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAG--LAFKRKWQ 142 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHH--HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-CChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHH--HHHHHHHh
Confidence 3447899999998875532 344445556677777666666656655334333 2123789999999873 332322
Q ss_pred ------CC-----EEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012628 177 ------GA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245 (459)
Q Consensus 177 ------gd-----~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~ 245 (459)
|+ +|+++.++|..+...++..|++++.+|++ ++++.+|++++++++++ +++++++++|+||||.+
T Consensus 143 ~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~---~t~~v~~~~~~n~tG~~ 218 (502)
T 3hbx_A 143 NKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPQQAVDMVDE---NTICVAAILGSTLNGEF 218 (502)
T ss_dssp HHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-TTBCSCCHHHHHHHCCT---TEEEEEEEBSCTTTCCB
T ss_pred HHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC-CCcCcCCHHHHHHHHhh---CCEEEEEecCCCCCCcc
Confidence 66 99999999999999999999999999985 34589999999999986 78888889999999999
Q ss_pred CCHHHHHHHHHHHHhc------CCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012628 246 PTPEQWEKIADVIQEK------NHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA 315 (459)
Q Consensus 246 ~s~~~l~~i~~l~~~~------~~~ii~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 315 (459)
+++++|.++|+++ |+++++|++|.++. .+... + ......-+++..|.+|.++ .+.++||
T Consensus 219 ---~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~---~----~~~~~~~D~v~~s~hK~l~-~p~g~G~ 287 (502)
T 3hbx_A 219 ---EDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE---W----DFRLPLVKSINVSGHKYGL-VYAGIGW 287 (502)
T ss_dssp ---CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC---C----STTSTTEEEEEEETTTTTC-CCSSCEE
T ss_pred ---cCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc---c----ccCCCCceEEEECcccccC-CCCCeEE
Confidence 7788899999998 99999999998654 21110 0 0112245677889999875 5677999
Q ss_pred EEEEeCChhHHHHHHHHHHhhcccc----------ccCC--chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012628 316 MNVVCSSSDLAARVKSQLKRLARPM----------YSNP--PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL 383 (459)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 383 (459)
++ +++++.+. ..+.....+. ++.+ ..+++.++...+. .+.+.+..++..++++++
T Consensus 288 ~~--~~~~~~l~---~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg--------~~g~~~~~~~~~~~a~~l 354 (502)
T 3hbx_A 288 VI--WRNKEDLP---EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--------HEGYRNVMENCRENMIVL 354 (502)
T ss_dssp EE--ESSGGGSC---GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred EE--EeCHHHhh---HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 84 45544211 1110000000 0011 2223333333222 234567788888899999
Q ss_pred HHHHhhccCCCCCcccccC--Ccceeeec--C---CCH-HHHHHHHhcccEEEc----CC---C----cEEEccC-Chhh
Q 012628 384 FDSLSAKDKSGKDWSFILR--QIGMFSFT--G---LNK-AQSDNMTNKWHVYMT----KD---G----RISLAGL-SLAK 443 (459)
Q Consensus 384 ~~~L~~~~g~~~~~~~~~~--~~g~f~~~--~---l~~-~~~~~ll~~~gI~v~----~g---g----Ris~~~~-~~e~ 443 (459)
.+.|+ +++ +++++.+ ..+++.|. + ++. ++.++|.+ +||.+. |. + ||+++.. ++++
T Consensus 355 ~~~L~-~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~ed 429 (502)
T 3hbx_A 355 REGLE-KTE---RFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRR-YGWIVPAYTMPPNAQHITVLRVVIREDFSRTL 429 (502)
T ss_dssp HHHHH-TTT---CEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHT-TTCBCCEEECCTTCTTCEEEEEECCTTCCHHH
T ss_pred HHHHH-hCC---CEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHh-CCcEEeeccCCcccCCceEEEEEeCCCCCHHH
Confidence 99999 875 2565544 44544432 2 344 45556655 699753 21 2 9998754 7899
Q ss_pred HHHHHHHHHHHHhhc
Q 012628 444 CEYLADAIIDSYHNV 458 (459)
Q Consensus 444 i~~~~~~l~~~~~~~ 458 (459)
++.+++.|+++++++
T Consensus 430 id~li~~L~~~l~~l 444 (502)
T 3hbx_A 430 AERLVIDIEKVMREL 444 (502)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 200
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.92 E-value=1.6e-23 Score=213.82 Aligned_cols=328 Identities=10% Similarity=-0.005 Sum_probs=215.1
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccc-------cCceEEeecccchhHHHHHHHHHHHh-
Q 012628 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERY- 174 (459)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~a~~l~~~~~~~~- 174 (459)
+..+.+.+...+..+ ...|....+..++++++++++....|.+.+ ..++++ |+|||+|+.++.......
T Consensus 87 ~~~~~~~~~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~~~~~ 163 (486)
T 1js3_A 87 PAMLADMLCGAIGCI-GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTKV 163 (486)
T ss_dssp HHHHHHHHHHHHCCC-CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-ccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHHHHHH
Confidence 455777777777543 366777777888998988887766665432 245778 999999998874332211
Q ss_pred CC------CC--------E--EEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC---CCcEEEEe
Q 012628 175 FP------GA--------K--VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLH 235 (459)
Q Consensus 175 ~~------gd--------~--Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~ii~ 235 (459)
.+ || + |++++++|..+...++..|++++.+|+ ++++.+|+++|+++|++.. ....++++
T Consensus 164 ~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~--d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~ 241 (486)
T 1js3_A 164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFFVVA 241 (486)
T ss_dssp HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec--CCCCCCCHHHHHHHHHHHHhCCCCceEEEE
Confidence 11 42 3 888999999999999999999999998 3578999999999997611 11247788
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA 315 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 315 (459)
++|+||||.+ +++++|+++|++||+++++|++|..+..... +.... +........++.|++|.++.| +++|+
T Consensus 242 ~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~--~~~~~--~~g~~~adsi~~~~hK~~~~p-~~~G~ 313 (486)
T 1js3_A 242 TLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICP--EFRHL--LNGVEFADSFNFNPHKWLLVN-FDCSA 313 (486)
T ss_dssp EBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGST--TTGGG--GTTGGGCSEEEECHHHHSSCC-SSCEE
T ss_pred eCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCH--HHHHH--hcCccccCeeEEchhhhcCCC-cceEE
Confidence 9999999998 8999999999999999999999987543210 11110 001111235567899999865 88999
Q ss_pred EEEEeCChhH-HHHHH---HHHHhhcc----------c--ccc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 316 MNVVCSSSDL-AARVK---SQLKRLAR----------P--MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 316 ~~~v~~~~~~-~~~~~---~~~~~~~~----------~--~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
++ ++++.. .+.+. ..+..... . ..+ ....+++.++...+. .+.++++.+++.+
T Consensus 314 l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g--------~~g~~~~~~~~~~ 383 (486)
T 1js3_A 314 MW--VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQAYIRKHVQ 383 (486)
T ss_dssp EE--ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred EE--EeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh--------HHHHHHHHHHHHH
Confidence 94 455542 12210 11110000 0 000 122334444433331 2346778888889
Q ss_pred HHHHHHHHHhhccCCCCCcccc-cCCcceeeec--CC---CHHHHHHHHhcccEEE-cCC---C----cEEEccC--Chh
Q 012628 379 VRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL---NKAQSDNMTNKWHVYM-TKD---G----RISLAGL--SLA 442 (459)
Q Consensus 379 ~~~~l~~~L~~~~g~~~~~~~~-~~~~g~f~~~--~l---~~~~~~~ll~~~gI~v-~~g---g----Ris~~~~--~~e 442 (459)
+++++.+.|+ +++ ++++. .++.+++.|. +. +.++.++|.++ |+.+ .++ | |+++++. +++
T Consensus 384 ~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~ 458 (486)
T 1js3_A 384 LSHEFEAFVL-QDP---RFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLRGQFVLRFAICSRKVESG 458 (486)
T ss_dssp HHHHHHHHHH-HCT---TEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred HHHHHHHHHh-cCC---CeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEeCCCCCCHH
Confidence 9999999998 762 15654 3566666553 22 34456666665 6543 322 2 9998643 678
Q ss_pred hHHHHHHHHHHHHhhc
Q 012628 443 KCEYLADAIIDSYHNV 458 (459)
Q Consensus 443 ~i~~~~~~l~~~~~~~ 458 (459)
++++++++|+++++++
T Consensus 459 di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 459 HVRLAWEHIRGLAAEL 474 (486)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 201
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.91 E-value=1.7e-22 Score=203.38 Aligned_cols=184 Identities=14% Similarity=-0.069 Sum_probs=141.0
Q ss_pred CcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHH-------Hh
Q 012628 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-------RY 174 (459)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~-------~~ 174 (459)
+++.+.+++.+.+.. ..|.+..+..++|+++++++.. +++++ +++|+++++++...+. .+
T Consensus 41 ~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~la~~~g~--------~~~i~--~~sGt~a~~~al~~l~~~~~~~~~~ 107 (437)
T 3bb8_A 41 IGTKELQLMVEASLD---GWLTTGRFNDAFEKKLGEYLGV--------PYVLT--TTSGSSANLLALTALTSPKLGVRAL 107 (437)
T ss_dssp CCHHHHHHHHHHHHH---CCCBSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHHHHHTTCGGGGGGSC
T ss_pred CCHHHHHHHHHHHHc---CCcCCChHHHHHHHHHHHHHCC--------CcEEE--eCCHHHHHHHHHHHhhhcccccccC
Confidence 367888888888764 2366778899999999999753 24666 7888999999843321 05
Q ss_pred CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHHH
Q 012628 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWEK 253 (459)
Q Consensus 175 ~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~-~p~NPTG~~~s~~~l~~ 253 (459)
.+||+|+++.|+|..+...++..|++++.+|+++ +++.+|++.+++++++ ++++++++ +++|| .++++
T Consensus 108 ~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~i~~---~~~~v~~~~~~g~~-------~~~~~ 176 (437)
T 3bb8_A 108 KPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDI-PTYNVNASLIEAAVSD---KTKAIMIAHTLGNL-------FDLAE 176 (437)
T ss_dssp CTTCEEEECSSSCHHHHHHHHHTTCEEEECCEET-TTTEECGGGHHHHCCT---TEEEEEEECGGGCC-------CCHHH
T ss_pred CCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccC-ccCCcCHHHHHHhcCC---CCeEEEEeCCCCCh-------hcHHH
Confidence 6899999999999999999999999999999863 3688999999999875 67777775 45555 67889
Q ss_pred HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 254 i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
|.++|+++|+++|+|++|......+ ... ..... .+++.||+|.++++|.|.|+++.
T Consensus 177 i~~l~~~~~~~li~D~a~~~g~~~~--~~~------~~~~~-d~~~~s~~~~k~l~~g~gg~~~~ 232 (437)
T 3bb8_A 177 VRRVADKYNLWLIEDCCDALGSTYD--GKM------AGTFG-DIGTVSFYPAKHITMGEGGAVFT 232 (437)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEET--TEE------TTSSS-SEEEEECSTTSSSCCSSCEEEEE
T ss_pred HHHHHHHcCCEEEEECccccCceEC--Cee------ccccc-CEEEEECcCCcCCCCCCeEEEEe
Confidence 9999999999999999987432111 111 11112 37778999999999999999854
No 202
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=2.6e-23 Score=205.34 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHhhhCC--CCeeee
Q 012628 129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDAR--VPWSEY 204 (459)
Q Consensus 129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~G--~~v~~v 204 (459)
.++++.+++++.. ++.+++ |+|||++++++. ..+.+||+|++++++|..+. ..++..| .+++.+
T Consensus 38 ~~~~~~l~~~~~~-------~~~v~~--~~sgt~a~~~~~---~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 38 NDLLSNLKTVYNA-------EAAVII--PGSGTYGMEAVA---RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHTC-------SEEEEE--ESCHHHHHHHHH---HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHhCC-------CCEEEE--cCChhHHHHHHH---HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence 4566667776533 256777 899999999973 44679999999999987653 3455555 467777
Q ss_pred eeecC------CC-CCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 205 RYYDP------KT-VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 205 ~~~~~------~~-~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
+.+.. .. ..+|++.+++++++ +++++++++.++||||.+++.+++++|+++|++||+++|+|+++. +..
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g~~ 181 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--GCV 181 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--TTC
T ss_pred eccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--CCc
Confidence 76421 01 25899999999964 156677778899999999999999999999999999999999965 321
Q ss_pred CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHH------------------HHhhccc
Q 012628 278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ------------------LKRLARP 339 (459)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~------------------~~~~~~~ 339 (459)
.. .+ ...+.++++.|++|.++. +.++|++++ +++..+.+... +....+.
T Consensus 182 --~~---~~----~~~~~d~~~~s~~K~l~~-~~g~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 248 (379)
T 3ke3_A 182 --WL---DM----KELGIDVLISAPQKGWSS-TPCAGLVML---SAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHA 248 (379)
T ss_dssp --CC---CH----HHHTCSEEEECTTTTTCS-CCCEEEEEE---CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCC
T ss_pred --cc---cc----cccCCCEEEecchhhcCC-CCceEEEEE---CHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCC
Confidence 11 11 112346788899998863 344899877 77755544320 0000011
Q ss_pred cccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCC---cc-eeeecCCCHH
Q 012628 340 MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IG-MFSFTGLNKA 415 (459)
Q Consensus 340 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~---~g-~f~~~~l~~~ 415 (459)
...+++..++.++...|+ +.. ++.+++++++++++++++.+.|+ ++| +++..+. .+ ...+..-+.+
T Consensus 249 ~~~t~~~~~~~a~~aal~---~~~--~~g~~~~~~~~~~l~~~l~~~l~-~~g----~~~~~~~~~~~~~i~~~~~~~~~ 318 (379)
T 3ke3_A 249 YHATMPTDSLRQFRDAIL---EAK--EIGFDILRDAQWELGNRVRKVLT-DKG----IESVAAEGFEAPGVVVSYTERDD 318 (379)
T ss_dssp CSSCCCHHHHHHHHHHHH---HHH--HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBSBCTTCBCSSEEEEECSCHH
T ss_pred CCCCCCHHHHHHHHHHHH---HHH--HhcHHHHHHHHHHHHHHHHHHHH-HcC----CEecCCccccCceEEEEccCCcc
Confidence 112444444444433332 110 12257888999999999999999 887 4544432 22 2222221233
Q ss_pred HH-HHHHhcccEEEcCC----------C---cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 416 QS-DNMTNKWHVYMTKD----------G---RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 416 ~~-~~ll~~~gI~v~~g----------g---Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
.. ...++++||.+.+| + |||+... ++++|++++++|+++++++
T Consensus 319 ~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 319 MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 31 33445569988765 3 8987643 8899999999999998764
No 203
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.91 E-value=7.6e-23 Score=201.70 Aligned_cols=314 Identities=11% Similarity=-0.053 Sum_probs=196.7
Q ss_pred CCccCcHHHHHHHHHHhhcCCCCCCCC-CcccHHHHHHH-HHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-h
Q 012628 98 LQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVT-AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-Y 174 (459)
Q Consensus 98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~g~~~lr~ai-a~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-~ 174 (459)
.+++ ++.+.+++.+.++.+. |.+ .....+|++++ |+++. . .+++++ ++|||+++.++ +... +
T Consensus 11 ~~~~-~~~i~~a~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~g-~------~~~~v~--~~sgt~al~~a--l~~l~~ 75 (377)
T 3ju7_A 11 STVP-VIEYLDELKEIDASHI---YTNYGPINQRFEQTIMSGFFQ-N------RGAVTT--VANATLGLMAA--IQLKKR 75 (377)
T ss_dssp CCCC-GGGGHHHHHHHHHHTC---CSSSCHHHHHHHHHHHHHTST-T------CSEEEE--ESCHHHHHHHH--HHHHSC
T ss_pred CCCC-cHHHHHHHHHHHHcCC---cccCCHHHHHHHHHHHHHHhC-C------CCeEEE--eCCHHHHHHHH--HHHcCC
Confidence 3443 7888999998887654 332 34578999999 99864 1 356777 89999999998 4444 6
Q ss_pred CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH-HcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012628 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI-KAAPGGSFILLHGCAHNPTGIDPTPEQWEK 253 (459)
Q Consensus 175 ~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i-~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~ 253 (459)
.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++++++++ ++. +++++++ |+||||.. .++++
T Consensus 76 ~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~~~-~~tk~v~---~~~~~G~~---~~~~~ 147 (377)
T 3ju7_A 76 KKGKYALMPSFTFPATPLAAIWCGLEPYFIDIS-IDDWYMDKTVLWDKIEELK-EEVAIVV---PYATFGSW---MNLEE 147 (377)
T ss_dssp TTCCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHHHHHG-GGEEEEC---CBCGGGBC---CCCHH
T ss_pred CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHHHhcCC-CCceEEE---EECCCCCc---cCHHH
Confidence 799999999999999999999999999999985 357899999999998 441 1277776 68999998 45778
Q ss_pred HHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHH
Q 012628 254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL 333 (459)
Q Consensus 254 i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~ 333 (459)
|.++|+ ||+++|+|++|......+ .. .+. ....+..++..+.+|.++. | +.|++ ++.++++.+++....
T Consensus 148 i~~la~-~~~~vi~D~a~a~g~~~~--~~--~~g--~~~~d~~~~S~~~~K~l~~-g-~gG~~--~~~~~~l~~~~~~~~ 216 (377)
T 3ju7_A 148 YEELEK-KGVPVVVDAAPGFGLMNG--GM--HYG--QDFSGMIIYSFHATKPFGI-G-EGGLI--YSKNEEDIQRIKRMG 216 (377)
T ss_dssp HHHHHH-TTCCBEEECTTCTTCEET--TE--ETT--TTCSSEEEEECBTTSSSCC-B-SCEEE--EESCHHHHHHHHHHT
T ss_pred HHHHHh-cCCEEEEECCCccCCeEC--CE--ecc--CCCCcEEEEECCCCCcCCC-C-CcEEE--EECCHHHHHHHHHHH
Confidence 889999 999999999965332110 00 000 0011233444445799984 5 46666 467777554443321
Q ss_pred Hhhcc--------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCc-
Q 012628 334 KRLAR--------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI- 404 (459)
Q Consensus 334 ~~~~~--------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~- 404 (459)
..... +.....+.+.+.++...+ +.++...++.+++++++.+.|+ +++.-. +.+....+
T Consensus 217 ~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~l~~~~~~~~~~~~~~~~~L~-~~~~~~-~~~~~~~~~ 284 (377)
T 3ju7_A 217 NFGFDTNRECTMMGFNCKMSEYAAAIGIATM----------KKWDDKLKERTRISEWYKQLLQ-SNGLMK-KGWQLQKTE 284 (377)
T ss_dssp BTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHH-HTTTTT-TTCBCCCCS
T ss_pred hcCCCCCCceeeccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-CCCCcc-ccccCCCCC
Confidence 11100 011123343333332222 2245566666777777788887 664100 11111111
Q ss_pred -ce--eeec--C--CCHHHHHHHHhcccEEEcCC----------------C-------------cEEEc-cCChhhHHHH
Q 012628 405 -GM--FSFT--G--LNKAQSDNMTNKWHVYMTKD----------------G-------------RISLA-GLSLAKCEYL 447 (459)
Q Consensus 405 -g~--f~~~--~--l~~~~~~~ll~~~gI~v~~g----------------g-------------Ris~~-~~~~e~i~~~ 447 (459)
.+ |+.+ . .+.+.+...|+++||.+..+ + |+++. .+++++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v 364 (377)
T 3ju7_A 285 AVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI 364 (377)
T ss_dssp CBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred cceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence 11 1111 2 12555555555579987553 0 55544 3589999999
Q ss_pred HHHHHHHHhh
Q 012628 448 ADAIIDSYHN 457 (459)
Q Consensus 448 ~~~l~~~~~~ 457 (459)
++.|++++..
T Consensus 365 ~~~l~~~~~~ 374 (377)
T 3ju7_A 365 VICLGQKVVS 374 (377)
T ss_dssp HHHHTC----
T ss_pred HHHHHHHHhc
Confidence 9999887754
No 204
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.91 E-value=7.9e-24 Score=210.46 Aligned_cols=317 Identities=9% Similarity=0.002 Sum_probs=197.7
Q ss_pred CCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCC--cccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~--~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+++++++.|. .++++.+.+++.+...... ...+.+. ....++|+.+++++... .+++|++ .|+|
T Consensus 39 ~~~~~~~~~~-------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~i~~-~t~g 105 (398)
T 2fyf_A 39 PRDGRFGSGP-------SKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLP-----DGYEVIL-GNGG 105 (398)
T ss_dssp CSSCBCCSSS-------CCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-----TTCEEEE-EETC
T ss_pred cCCccccCCC-------CCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEE-eCCc
Confidence 4667777553 2347889988876311100 0123232 23567888888886432 1345542 2799
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHhhhC--CCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 160 GTGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~--G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
|+++++++ +...+.+| .+++..+.|.. ....+... |++++.+|++ +++..+.+ ++ +++++++++
T Consensus 106 ~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~~-----i~---~~~~~v~~~ 172 (398)
T 2fyf_A 106 ATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEPQ-----TD---PSVDVIAWA 172 (398)
T ss_dssp HHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCCC-----CC---TTCSEEEEE
T ss_pred hhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCcc-----cc---CCCCEEEEe
Confidence 99999998 33346676 22333333321 12234555 8899999884 33333321 33 367788889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceE
Q 012628 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM 316 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~ 316 (459)
+|+||||.+++.+++.++ +|+++|+|++|..+... .+ + .. .++++.|+||.+|++| ++||+
T Consensus 173 ~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~---~~---~----~~--~di~~~s~sK~~~~~g-g~g~l 233 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP---VD---I----AE--TDAYYFAPQKNFASDG-GLWLA 233 (398)
T ss_dssp SEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC---CC---G----GG--CSEEEECTTSTTCSCS-SEEEE
T ss_pred CcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc---cC---c----cc--CcEEEEecCcccCCCC-ceEEE
Confidence 999999999887776654 89999999998765421 11 1 11 3578899999999876 59998
Q ss_pred EEEeCChhHHHHHHHHHH---------------h-h-ccccccCCchHHHHHHHHHhCChhhHHHHHHH--HHHHHHHHH
Q 012628 317 NVVCSSSDLAARVKSQLK---------------R-L-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE--MEMMAGRIK 377 (459)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~---------------~-~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~ 377 (459)
++ +++.++.+..... . . ....+.+++..++.++...|+. + .+. +++++++++
T Consensus 234 ~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~--~----~~~g~~~~~~~~~~ 304 (398)
T 2fyf_A 234 IM---SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW--L----VGNGGLDWAVKRTA 304 (398)
T ss_dssp EE---CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--H----HHHTSHHHHHHHHH
T ss_pred EE---CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH--H----HHccCHHHHHHHHH
Confidence 76 7776555432110 0 0 0122234555555555444421 1 122 678889999
Q ss_pred HHHHHHHHHHhhccCCCCCccccc--C--CcceeeecC----CCH-HHHHHHHhcccEEEcCC------C--cEEEccC-
Q 012628 378 NVRQKLFDSLSAKDKSGKDWSFIL--R--QIGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISLAGL- 439 (459)
Q Consensus 378 ~~~~~l~~~L~~~~g~~~~~~~~~--~--~~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~- 439 (459)
++++++.+.|+ +++ ++++.. + .+++++|+. ++. ++.+.|.++ ||.+.+| + |||++..
T Consensus 305 ~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~ 379 (398)
T 2fyf_A 305 DSSQRLYSWAQ-ERP---YTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAV 379 (398)
T ss_dssp HHHHHHHHHHH-HST---TEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTS
T ss_pred HHHHHHHHHHH-HcC---CceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCC
Confidence 99999999999 872 155552 3 345466653 344 456666665 9999874 2 9999853
Q ss_pred ChhhHHHHHHHHHHHHhhc
Q 012628 440 SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 440 ~~e~i~~~~~~l~~~~~~~ 458 (459)
+++++++++++|+++++++
T Consensus 380 t~e~i~~~~~~l~~~l~~~ 398 (398)
T 2fyf_A 380 EPDDVSALTECVDWVVERL 398 (398)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 8999999999999998764
No 205
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.91 E-value=6.4e-23 Score=210.21 Aligned_cols=319 Identities=12% Similarity=0.038 Sum_probs=209.4
Q ss_pred HHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh------CCC----
Q 012628 108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPG---- 177 (459)
Q Consensus 108 ~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~------~~g---- 177 (459)
+.+...+..+ ...|....+..++++.+.+++....|.+.+++++++ |+|||+++.++...+... .+|
T Consensus 111 ~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~~~G~~~~ 187 (504)
T 2okj_A 111 EWLTSTANTN-MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKGMAAV 187 (504)
T ss_dssp HHHHHHHCCB-SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGGS
T ss_pred HHHHHhhccC-CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHhhcCcccc
Confidence 4444444332 245665566666676665555554454333568888 999999999985544221 146
Q ss_pred -C-EEEEcCCCCcchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHH
Q 012628 178 -A-KVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPE 249 (459)
Q Consensus 178 -d-~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~ 249 (459)
+ .|+++.++|..+...++..|. +++.+|+ ++++.+|+++|++++++. ..+++++++++|+||||.+ +
T Consensus 188 ~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i---~ 262 (504)
T 2okj_A 188 PKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF---D 262 (504)
T ss_dssp CCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCB---C
T ss_pred CCeEEEECCcchHHHHHHHHHcCCCcccEEEEec--CCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCc---C
Confidence 6 799999999999998888876 8899998 346899999999999751 1247888899999999999 7
Q ss_pred HHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHH
Q 012628 250 QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328 (459)
Q Consensus 250 ~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~ 328 (459)
++++|+++|++||+++++|++|..+..... .. +..+. ....++++.|++|.++.| .++|++++ ++++....
T Consensus 263 ~l~~I~~la~~~g~~lhvD~a~~~~~~~~~--~~---~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~--~~~~~~~~ 334 (504)
T 2okj_A 263 PIQEIADICEKYNLWLHVDAAWGGGLLMSR--KH---RHKLNGIERANSVTWNPHKMMGVL-LQCSAILV--KEKGILQG 334 (504)
T ss_dssp CHHHHHHHHHHHTCEEEEEETTGGGGGGCT--TT---GGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEE--SSTTHHHH
T ss_pred CHHHHHHHHHHcCCEEEEehhhhhHHHhCH--hh---HhhcCCcccCCEEEECchhhcCCC-cceEEEEE--ECHHHHHH
Confidence 788999999999999999999987764211 11 01111 112347788999999855 68999954 55453322
Q ss_pred HHHHHHhhcccccc--------------------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012628 329 VKSQLKRLARPMYS--------------------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 388 (459)
Q Consensus 329 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 388 (459)
. +......... ....+.+.++...+. .+.++++.++..++++++.+.|+
T Consensus 335 ~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~ 403 (504)
T 2okj_A 335 C---NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEYLYAKIK 403 (504)
T ss_dssp H---HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H---hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111111100 012333344433332 23367788889999999999998
Q ss_pred hccCCCCCccccc---CCcceeeecCC--------------------CHHHHHHHHhcccE-EEcC----C--C--cEEE
Q 012628 389 AKDKSGKDWSFIL---RQIGMFSFTGL--------------------NKAQSDNMTNKWHV-YMTK----D--G--RISL 436 (459)
Q Consensus 389 ~~~g~~~~~~~~~---~~~g~f~~~~l--------------------~~~~~~~ll~~~gI-~v~~----g--g--Ris~ 436 (459)
+.+ +++++. +..++++|... +.++.++|.++ |+ .+.+ + + ||++
T Consensus 404 -~~~---~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRis~ 478 (504)
T 2okj_A 404 -NRE---EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVI 478 (504)
T ss_dssp -TCT---TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECC
T ss_pred -cCC---CEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEECCceEEEEEEe
Confidence 762 156553 66777766321 12345566665 74 3331 2 2 8998
Q ss_pred cc--CChhhHHHHHHHHHHHHhhc
Q 012628 437 AG--LSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 437 ~~--~~~e~i~~~~~~l~~~~~~~ 458 (459)
++ .+++++++++++|+++++++
T Consensus 479 ~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 479 SNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 62 27899999999999988764
No 206
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.90 E-value=7.3e-22 Score=195.83 Aligned_cols=248 Identities=14% Similarity=0.080 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhh------cCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012628 104 DVVKKAENLMLE------RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177 (459)
Q Consensus 104 ~~v~~a~~~~~~------~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g 177 (459)
..|++++.+... ....+.| +..|..+|++.+|+++... ..+++.++++|++++.++ +.+.+.||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~~G 101 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGY-DDEGRDTLERVYATVFKTE-------AALVRPQIISGTHAISTV--LFGILRPD 101 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTSCSHHHHHHHH--HHHHCCTT
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCC-ChhHHHHHHHHHHHHhCCC-------cEEEECCCccHHHHHHHH--HHHhcCCC
Confidence 557777776531 1122445 3457789999999997542 334322257889999888 55557899
Q ss_pred CEEEEcC-CCCcchHH----------HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC----CCCCC
Q 012628 178 AKVLISS-PTWGNHKN----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNPT 242 (459)
Q Consensus 178 d~Vlv~~-p~y~~~~~----------~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~----p~NPT 242 (459)
|+|++++ |.|..+.. .++..|++++.+|++ +++.+|++++++++++ +++++++++ |+|||
T Consensus 102 D~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~--~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~npt 176 (409)
T 3jzl_A 102 DELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLL--ENGDVDFPRIAKKMTP---KTKMIGIQRSRGYADRPS 176 (409)
T ss_dssp CEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCC--TTSCCCHHHHHHHCCT---TEEEEEEECSCTTSSSCC
T ss_pred CEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCC--CCCCcCHHHHHHhccC---CCeEEEEECCCCCCCCCc
Confidence 9999998 99998874 446779999999984 4678999999999975 788999898 99999
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC-CcceEEEE
Q 012628 243 GIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVV 319 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v 319 (459)
|.+ .++++|+++|++ ||+++++|++|..+.+.. ... ..+.+++++|+||.++.+|. +.||+++
T Consensus 177 g~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~~---~p~-------~~g~Div~~S~sK~lgg~~~~~GG~v~~- 242 (409)
T 3jzl_A 177 FTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQ---EPP-------EVGADIIAGSLIKNPGGGLAKTGGYIAG- 242 (409)
T ss_dssp CCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSC---CSG-------GGTCSEEEEETTSGGGTTTCSSCEEEEE-
T ss_pred Ccc---ccHHHHHHHHHhhCCCCEEEEeCCcccccccC---Ccc-------ccCCeEEEECccccCCccCCceEEEEEe-
Confidence 998 899999999999 999999999998776321 111 11346899999999996663 3577655
Q ss_pred eCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012628 320 CSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 393 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 393 (459)
++++++.+.............++....+.++...| +.+...+++..+++.++.+.|+ ++|+
T Consensus 243 --~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~-~~g~ 303 (409)
T 3jzl_A 243 --KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF----------FLAPHVTAQAIKGARFTAAMLA-EFGV 303 (409)
T ss_dssp --CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred --CHHHHHHHHHHhccccccccccccHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 78866666553321100011122111122222111 2245667778889999999999 8873
No 207
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.83 E-value=1.5e-25 Score=225.35 Aligned_cols=334 Identities=14% Similarity=0.054 Sum_probs=209.6
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...|||..|.+....+. -+|.|.+++.+.+.......| +.....+|.+.+++++.+ .+.+++ +++|+
T Consensus 99 G~~yiD~~~~~~~~~lGh--~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~~--~nSGs 166 (465)
T 2yky_A 99 GHAYVNFLGEYTAGLFGH--SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFPS-------IDLVRF--TNSGT 166 (465)
Confidence 357889988875332333 268899998887765432344 555567788888887531 467888 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCC--CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~--~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
+|+..+.++...+..+++|++.+++|..+..... ..|+ .++.+|. .|++.+++.+++.+++++++++
T Consensus 167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~ 239 (465)
T 2yky_A 167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILV 239 (465)
Confidence 9999997665444566999999999977654332 1233 2333332 2788899888743336667776
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcc
Q 012628 236 GCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314 (459)
Q Consensus 236 ~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 314 (459)
...+|+||.+ .+++.+++|.++|++||+++|+||+|. +..+. ......+ ...++ +.||||.+|. |+|+|
T Consensus 240 epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~~~~-gv~pD---i~t~sK~lg~-G~piG 309 (465)
T 2yky_A 240 EPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQEML-GISAD---LTTLGKYIGG-GMSFG 309 (465)
Confidence 6556679964 468889999999999999999999998 64321 1111111 11122 3489999995 99999
Q ss_pred eEEEEeCChhHHHHHHHH-HHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012628 315 AMNVVCSSSDLAARVKSQ-LKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 393 (459)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 393 (459)
|+++ +++.++.+... ........+.+.+.+++.++...|+.- ++ +...++++++.+++.+.|+ ++.-
T Consensus 310 ~v~~---~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l------~~--~~~~~~~~~~~~~l~~~L~-~~~~ 377 (465)
T 2yky_A 310 AFGG---RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQI------YT--RQAASDLSASGDRFRANLN-RIAV 377 (465)
Confidence 9866 77755554431 010111223345555666654444311 00 2345556666666666665 4310
Q ss_pred CCCcccccCCcceeeecCCC------------------HHHHHHHHhcccEEEcCCC--cEEEccCChhhHHHHHHHHHH
Q 012628 394 GKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--RISLAGLSLAKCEYLADAIID 453 (459)
Q Consensus 394 ~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--Ris~~~~~~e~i~~~~~~l~~ 453 (459)
..++....+..|.++|+.+. ..+++.|++ +||++.|++ .+++.. +++++++++++|.+
T Consensus 378 ~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~~~~~s~~~-t~edid~~l~~l~~ 455 (465)
T 2yky_A 378 ENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRGMYALSLEI-ADAGRDAFAEALAD 455 (465)
Confidence 00011122334545554321 234556776 599999876 356654 89999999999999
Q ss_pred HHhhc
Q 012628 454 SYHNV 458 (459)
Q Consensus 454 ~~~~~ 458 (459)
+++++
T Consensus 456 ~l~~~ 460 (465)
T 2yky_A 456 FIGEQ 460 (465)
Confidence 98765
No 208
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.90 E-value=9e-22 Score=195.85 Aligned_cols=249 Identities=14% Similarity=0.067 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhh------cCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC
Q 012628 104 DVVKKAENLMLE------RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177 (459)
Q Consensus 104 ~~v~~a~~~~~~------~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g 177 (459)
+.|++++.+... ....+.| +..|..+|++.+|+++... ..+++.|+++|++++.++ +.+.+.||
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~pG 115 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGY-GDIGRDSLDAVYARVFNTE-------SALVRPHFVNGTHALGAA--LFGNLRPG 115 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHHCCTT
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCC-CHHHHHHHHHHHHHHhCCc-------ceEEeCCCccHHHHHHHH--HHHHhCCC
Confidence 567788776431 1112344 4457889999999997543 234422257889999887 55567899
Q ss_pred CEEEEcC-CCCcchHH-----------HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC----CCCC
Q 012628 178 AKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNP 241 (459)
Q Consensus 178 d~Vlv~~-p~y~~~~~-----------~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~----p~NP 241 (459)
|+|++++ |.|..+.. .++..|++++.+|++ +++.+|++++++++++. ++++++++++ |+||
T Consensus 116 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~--~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~np 192 (427)
T 3i16_A 116 NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLK--EDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRR 192 (427)
T ss_dssp CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCC--TTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSC
T ss_pred CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCc--cCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCC
Confidence 9999999 99988874 345679999999884 35679999999999831 2788888888 9999
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEE
Q 012628 242 TGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNV 318 (459)
Q Consensus 242 TG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~ 318 (459)
||.+ .++++|+++|++ +|+++++|++|..+.+.. .. . ..+.+++++|+||.+|.+| .+.||+++
T Consensus 193 tg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~---~p--~-----~~gaDiv~~S~sK~lgg~g~~~gG~i~~ 259 (427)
T 3i16_A 193 ALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK---EP--T-----DVGADLIAGSLIKNIGGGIAPTGGYLAG 259 (427)
T ss_dssp CCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS---CG--G-----GGTCSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred cccH---HHHHHHHHHHHHhCCCCEEEEECCCccccccC---Cc--c-----ccCCeEEEecCcccCCCCCCceEEEEEE
Confidence 9988 999999999999 999999999998776321 11 1 1134689999999998666 56788765
Q ss_pred EeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012628 319 VCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 392 (459)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 392 (459)
++++++++...+.........++..-....+...+ +.+..+.++..+++.++.+.|+ ++|
T Consensus 260 ---~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~-~~g 319 (427)
T 3i16_A 260 ---TKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGL----------FLAPHISMEALKGAILCSRIME-LAG 319 (427)
T ss_dssp ---CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred ---CHHHHHHHHHhcccCccCccCCccHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 88866665543221100111122111122222111 2245677888889999999999 887
No 209
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.90 E-value=3.9e-22 Score=199.37 Aligned_cols=159 Identities=13% Similarity=0.040 Sum_probs=126.7
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HhhhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~G~ 199 (459)
+.....+|++.++++... +..++ +++|++|+.++ +...+.+||+|++++|+|..+.. .++..|+
T Consensus 80 ~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 147 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLTGA--------LGVLA--LGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI 147 (430)
T ss_dssp CCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 556778999999998643 22444 56778999988 44457899999999999988777 6678899
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~ 279 (459)
+++.+|.+ |++++++++++ +++++++++|+||||.++ ++++|+++|+++|+++|+|++|.......
T Consensus 148 ~~~~v~~~-------d~~~l~~ai~~---~t~~v~~e~p~NptG~~~---dl~~i~~la~~~g~~livD~a~~~~~~~~- 213 (430)
T 3ri6_A 148 EVRFVDVM-------DSLAVEHACDE---TTKLLFLETISNPQLQVA---DLEALSKVVHAKGIPLVVDTTMTPPYLLE- 213 (430)
T ss_dssp EEEEECTT-------CHHHHHHHCCT---TEEEEEEESSCTTTCCCC---CHHHHHHHHHTTTCCEEEECTTSCTTTCC-
T ss_pred EEEEeCCC-------CHHHHHHhhCC---CCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 99998762 89999999875 788999999999999996 47789999999999999999987544311
Q ss_pred CCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
.. ..+.++++.|+||.++.+|..+|.+++
T Consensus 214 ---~~-------~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 214 ---AK-------RLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp ---GG-------GGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred ---hH-------HcCCEEEEECCcccccCCCCceEEEEE
Confidence 11 123468999999999988877888754
No 210
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.90 E-value=1.3e-21 Score=200.29 Aligned_cols=326 Identities=11% Similarity=0.031 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHh---------
Q 012628 104 DVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--------- 174 (459)
Q Consensus 104 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~--------- 174 (459)
..+.+.+...+..+ ...|....+..++++++++++....|.+..+..+++ |+|||+|+..+......-
T Consensus 110 ~~~~e~l~~~~~~~-~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~G 186 (511)
T 3vp6_A 110 GLAGEWLTSTANTN-MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKG 186 (511)
T ss_dssp HHHHHHHHHHHCCC-SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHHHC
T ss_pred HHHHHHHHHHhccC-CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhhcC
Confidence 34456666666544 377888889999999999998777776655578888 999999998874333221
Q ss_pred ---CCCCEEEEcCCCCcchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCC
Q 012628 175 ---FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGID 245 (459)
Q Consensus 175 ---~~gd~Vlv~~p~y~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~ 245 (459)
.+++.|+++.++|..+...++..|. +++.+|++ +++.+|+++|+++|++. ...++++++++++||||.+
T Consensus 187 ~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v 264 (511)
T 3vp6_A 187 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF 264 (511)
T ss_dssp GGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB
T ss_pred cccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc
Confidence 1578999999999999999999998 88899984 46899999999999762 1127888899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcceEEEEeCChh
Q 012628 246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324 (459)
Q Consensus 246 ~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~ 324 (459)
+++++|+++|++||+++++|++|........ .. +..+. ....++++.+++|.++.| ..+|+++ +++++
T Consensus 265 ---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~---~~--~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~--~~~~~ 333 (511)
T 3vp6_A 265 ---DPIQEIADICEKYNLWLHVDAAWGGGLLMSR---KH--RHKLNGIERANSVTWNPHKMMGVL-LQCSAIL--VKEKG 333 (511)
T ss_dssp ---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCT---TT--GGGGTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESSTT
T ss_pred ---ccHHHHHHHHHHcCCEEEEEccchhhHhhCh---hh--hhhccCCccCCEEEECcccccCCC-cCeEEEE--EeCHH
Confidence 8899999999999999999999877553210 00 01111 112356778999998755 5588884 45555
Q ss_pred HHHHHHHHHHhhcccc------------c----c-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012628 325 LAARVKSQLKRLARPM------------Y----S-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL 387 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~------------~----~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 387 (459)
................ + + ....+...++...+. .+.++++.++..++.+++.+.|
T Consensus 334 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~~~~~a~~l~~~L 405 (511)
T 3vp6_A 334 ILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEYLYAKI 405 (511)
T ss_dssp HHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211000000000 0 0 012223333332221 2346788889999999999999
Q ss_pred hhccCCCCCccccc---CCcceeeec----CC----------------CHHHHHHHHhcccEEEcC-----CC----cEE
Q 012628 388 SAKDKSGKDWSFIL---RQIGMFSFT----GL----------------NKAQSDNMTNKWHVYMTK-----DG----RIS 435 (459)
Q Consensus 388 ~~~~g~~~~~~~~~---~~~g~f~~~----~l----------------~~~~~~~ll~~~gI~v~~-----gg----Ris 435 (459)
+ +.+ ++++.. +..++++|. ++ +.++.++|+++ |+.+.. ++ ||+
T Consensus 406 ~-~~p---g~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRi~ 480 (511)
T 3vp6_A 406 K-NRE---EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMV 480 (511)
T ss_dssp H-SCT---TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEC
T ss_pred h-cCC---CEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEeCCceEEEEEE
Confidence 8 762 156654 555655552 11 11345566665 754332 22 888
Q ss_pred EccC--ChhhHHHHHHHHHHHHhhc
Q 012628 436 LAGL--SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 436 ~~~~--~~e~i~~~~~~l~~~~~~~ 458 (459)
+++. ++++|+.++++|+++-+.+
T Consensus 481 ~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 481 ISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 8432 7899999999998876543
No 211
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.89 E-value=3e-21 Score=192.06 Aligned_cols=249 Identities=13% Similarity=0.050 Sum_probs=171.3
Q ss_pred cHHHHHHHHHHhhc------CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC
Q 012628 103 LDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176 (459)
Q Consensus 103 ~~~v~~a~~~~~~~------~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~ 176 (459)
.+.|++++.+.... ...+.| +..|..+|++.+|+++... ..++..|+++|++|+.++ +.+.+.|
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~g~e-------~alv~p~~~sGt~A~~~a--l~all~p 115 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIFNTE-------SAFVRPHFVNGTHAIGAA--LFGNLRP 115 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHTCCT
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHhCCC-------ceEEeCCCCcHHHHHHHH--HHHhcCC
Confidence 36788888775321 122445 3447899999999997542 224311257889999887 5556789
Q ss_pred CCEEEEcC-CCCcchHH-----------HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCC----CCC
Q 012628 177 GAKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHN 240 (459)
Q Consensus 177 gd~Vlv~~-p~y~~~~~-----------~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~----p~N 240 (459)
||+|++++ |.|..+.. .++..|++++.+|. +++.+|++++++++++. ++++++++++ |+|
T Consensus 116 GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 116 NDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp TCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred CCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 99999999 99988763 45567999999887 25689999999999831 2788888888 999
Q ss_pred CCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEE
Q 012628 241 PTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMN 317 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~ 317 (459)
|||.+ .++++|+++|++ +|+++++|++|..+.+.. . .. ..+.+++++|+||.++.+| .+.||++
T Consensus 192 ptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~---~--p~-----~~gaDiv~~S~sK~lgg~g~~~GG~i~ 258 (427)
T 3hvy_A 192 KSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEK---E--PT-----DVGADIIAGSLIKNIGGGIATTGGYIA 258 (427)
T ss_dssp CCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS---C--GG-----GGTCSEEEEETTSGGGTTTCCSCEEEE
T ss_pred ccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCC---C--Cc-----ccCCeEEEECCcccccccccceEEEEE
Confidence 99988 999999999999 899999999998776321 1 11 1134689999999998655 4457765
Q ss_pred EEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012628 318 VVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 392 (459)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 392 (459)
+ ++++++++.............+++...+.++...+ +.+..+.++..+++.++.+.|+ ++|
T Consensus 259 ~---~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~~L~-~~g 319 (427)
T 3hvy_A 259 G---KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGL----------FMAPHVTIEAVKGAVFCARIME-LAG 319 (427)
T ss_dssp E---CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred E---CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 5 78866665543221100111122111122222111 2235667778888999999999 887
No 212
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.89 E-value=7.6e-23 Score=206.17 Aligned_cols=285 Identities=11% Similarity=0.067 Sum_probs=174.7
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCC
Q 012628 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP 200 (459)
Q Consensus 121 ~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~ 200 (459)
.|.+.....++++.+++ +.. .+++++ |+|+|+++.++ +...+.+||+|+++.|+|..+...+...|++
T Consensus 52 ~~~~~~~~~~~~~~la~-~g~-------~~~v~~--~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~ 119 (446)
T 2x3l_A 52 LHHPEEVILKSMKQVEK-HSD-------YDGYFL--VNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQE 119 (446)
T ss_dssp TTSCSSHHHHHHHHHCS-CTT-------EEEEEE--SSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCC
T ss_pred ccCcchHHHHHHHHHHh-cCC-------CceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCe
Confidence 45566677888888887 532 256888 99999999998 4444679999999999999999999999999
Q ss_pred eeeeeeecCCC----CCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CC
Q 012628 201 WSEYRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FA 275 (459)
Q Consensus 201 v~~v~~~~~~~----~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~-~~ 275 (459)
++.++...+++ +.+|++.+ +.+ +++++++++ +|+||.+.+ +++|+++|++||+++|+||+|.. +.
T Consensus 120 ~~~v~~~~~~~~~~~~~~d~~~l---~~~---~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~ 189 (446)
T 2x3l_A 120 GHFIETHQSPLTNHYNKVNLSRL---NND---GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFG 189 (446)
T ss_dssp EEECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred EEEEeCeeccccCcCCCCCHHHH---cCC---CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhc
Confidence 99999832323 56788877 332 566777777 566999965 77899999999999999999886 32
Q ss_pred CCCCCCChhHHHHHHhcCCeEEEEEcCCcC-cccCCCCcceEEEEeCChhHHH--HHHHHHHhhccccccCCchHHHHHH
Q 012628 276 SGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAA--RVKSQLKRLARPMYSNPPVHGARIV 352 (459)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (459)
+.+. .... ... +..+++.|+||. +++. ++||+++ +++.++ .+....... ...+++.....++
T Consensus 190 f~~~---~~~~---~~~-g~Di~~~S~~K~l~~~~--g~g~l~~---~~~~i~~~~~~~~~~~~---~~~s~~~~~~aal 254 (446)
T 2x3l_A 190 LQGF---PDST---LNY-QADYVVQSFHKTLPALT--MGSVLYI---HKNAPYRENIIEYLSYF---QTSSPSYLIMASL 254 (446)
T ss_dssp STTS---CCCG---GGG-TCSEEEECHHHHSSSCT--TCEEEEE---ETTCTTHHHHHHHHHHH---SCSSCCHHHHHHH
T ss_pred cCCC---CCCh---HHc-CCCEEEECCcccccccc--ccEEEEE---cCCcCCHHHHHHHHHHH---cCCCchHHHHHHH
Confidence 3221 1111 111 234899999995 4444 4899965 444322 333222221 1223333222222
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeeec---CCCHHH-HHHHHhcccEEE
Q 012628 353 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT---GLNKAQ-SDNMTNKWHVYM 428 (459)
Q Consensus 353 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~~---~l~~~~-~~~ll~~~gI~v 428 (459)
...+ ++.+.+ ..++..++.++ +.+.+. +.| +++..+..+.++|+ +.+... .+.|.++ ||.+
T Consensus 255 ~~a~---~~l~~~--g~~~~~~~~~~----l~~~l~-~~g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~-GI~v 319 (446)
T 2x3l_A 255 ESAA---QFYKTY--DSTLFFAKRAQ----LIECLE-NKG----FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNA-HIYL 319 (446)
T ss_dssp HHHH---HHHHHC--CCHHHHHHHHH----HHHHHH-HHT----CEEEECSSTTEEEEECTTSCHHHHHHHHHHT-TEEE
T ss_pred HHHH---HHHHHh--CHHHHHHHHHH----HHHHHH-HcC----CEECcCCCCeEEEEEeCCcCHHHHHHHHHHC-CCEE
Confidence 1111 111000 00113333333 334444 323 45554444445555 345544 5566564 9999
Q ss_pred c-CCC---cEEEccC-ChhhHHHHHHHHHHHHhhc
Q 012628 429 T-KDG---RISLAGL-SLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 429 ~-~gg---Ris~~~~-~~e~i~~~~~~l~~~~~~~ 458 (459)
. +|. |++++.. +++++ +++++|+++++++
T Consensus 320 ~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 320 ELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp SEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 8 553 9998753 78899 9999999987653
No 213
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.89 E-value=1.2e-21 Score=195.17 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=149.0
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV 199 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~ 199 (459)
+.....++++.+|+++.. +++++ ++||++|++++ +...+.+||+|+++.|.|......+ +..|+
T Consensus 80 ~~p~~~~le~~lA~l~g~--------~~~i~--~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~ 147 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV 147 (415)
T ss_dssp CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred CCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 445567899999999743 34555 68889999988 4444679999999999998766543 46788
Q ss_pred CeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCC
Q 012628 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASG 277 (459)
Q Consensus 200 ~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~ 277 (459)
+++.++.+ |++++++++++ +++++++++|+||||.++ ++++|+++|++ +|+++|+|++|......
T Consensus 148 ~v~~v~~~-------d~~~le~ai~~---~tklV~~e~~~NptG~v~---dl~~I~~la~~~~~g~~livD~a~a~~~~~ 214 (415)
T 2fq6_A 148 TTSWFDPL-------IGADIVKHLQP---NTKIVFLESPGSITMEVH---DVPAIVAAVRSVVPDAIIMIDNTWAAGVLF 214 (415)
T ss_dssp EEEEECTT-------CGGGGGGGCCT---TEEEEEEESSCTTTCCCC---CHHHHHHHHHHHCTTCEEEEECTTTTTTSS
T ss_pred EEEEECCC-------CHHHHHHhhcc---CCcEEEEECCCCCCCEee---cHHHHHHHHHhhcCCCEEEEECCCcccccC
Confidence 88888651 78999988875 789999999999999995 57889999999 99999999998754321
Q ss_pred CCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCc-ceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHh
Q 012628 278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVV 356 (459)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 356 (459)
. .+ ..+.++++.|+||.++.+|.++ ||+++ +++.++.+...... . ....+...+.++...+
T Consensus 215 ----~--p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~---~~~~~~~l~~~~~~---~-G~~~~~~~a~~~~~~l 276 (415)
T 2fq6_A 215 ----K--AL-----DFGIDVSIQAATKYLVGHSDAMIGTAVC---NARCWEQLRENAYL---M-GQMVDADTAYITSRGL 276 (415)
T ss_dssp ----C--GG-----GGTCSEEEEETTTTTTCSSSCCCEEEEE---CTTTHHHHHHHHHH---T-TCCCCHHHHHHHHHHH
T ss_pred ----C--cc-----ccCCeEEEEeCccccCCCCCceEEEEEe---CHHHHHHHHHHHHh---c-CCCCCHHHHHHHHhhh
Confidence 1 11 1235789999999999888765 77754 55655555443221 1 1122333222222211
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 357 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
+.+....++..++.+.+.+.|+ +.
T Consensus 277 ----------~~l~~r~~~~~~n~~~l~~~L~-~~ 300 (415)
T 2fq6_A 277 ----------RTLGVRLRQHHESSLKVAEWLA-EH 300 (415)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 1234445555666777777776 54
No 214
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.89 E-value=2.1e-22 Score=204.40 Aligned_cols=340 Identities=11% Similarity=-0.020 Sum_probs=211.8
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcC---CCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (459)
+...|||..|.+-...++ -+|.|.+++.+.+... ....|+. ....++++++++.+....+. ..++|++ ++
T Consensus 62 G~~ylD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~--~~~~v~f--~~ 134 (472)
T 1ohv_A 62 GNRMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPK--GMSQLIT--MA 134 (472)
T ss_dssp SCEEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCT--TCCEEEE--ES
T ss_pred CCEEEECCCCHhhcccCC--CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCC--CcCEEEE--eC
Confidence 457899999987433444 3788999998765321 1122332 34578999999866554322 3578999 99
Q ss_pred cchhHHHHHHHHHHHh------C-----------------CC---CEEEEcCCCCcchHHHh-hhCCCCe----------
Q 012628 159 SGTGSLRLAAALIERY------F-----------------PG---AKVLISSPTWGNHKNIF-NDARVPW---------- 201 (459)
Q Consensus 159 ggt~a~~l~~~~~~~~------~-----------------~g---d~Vlv~~p~y~~~~~~~-~~~G~~v---------- 201 (459)
||++|++.+.++...+ . || ++|++.+++|.++.... ...|.+.
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~ 214 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 214 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence 9999999997766422 1 46 89999999998765433 2333221
Q ss_pred -eeeeeecC--C---C--C-----CCCHHHHHHHHHcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCe
Q 012628 202 -SEYRYYDP--K---T--V-----GLDFEGMIADIKAAP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHI 264 (459)
Q Consensus 202 -~~v~~~~~--~---~--~-----~~d~e~l~~~i~~~~---~~~~~ii~~~p~NPTG~-~~s~~~l~~i~~l~~~~~~~ 264 (459)
..+++... . . + ..|++.|++.+++.. .+++++++.+.+|+||. .++++.+++|.++|++||++
T Consensus 215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~l 294 (472)
T 1ohv_A 215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA 294 (472)
T ss_dssp CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCE
Confidence 11122100 0 0 0 126888988887521 15778887778899996 57899999999999999999
Q ss_pred eEEeccCCCCCCCCCCCChhHHHHHHhcC--CeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhcccccc
Q 012628 265 PFFDVAYQGFASGSLDNDASSVRLFATRG--MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYS 342 (459)
Q Consensus 265 ii~Deay~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 342 (459)
+|+||+|.+++..+ ..+.+..+ +.. .+ +.||||.+ +.| ||+ + +++ +. .........+.
T Consensus 295 li~DEv~~g~g~~g---~~~~~~~~-gv~~~~D---i~t~sK~~-l~G---G~~--~--~~~----~~-~~~~~~~~~T~ 354 (472)
T 1ohv_A 295 FLVDEVQTGGGSTG---KFWAHEHW-GLDDPAD---VMTFSKKM-MTG---GFF--H--KEE----FR-PNAPYRIFNTW 354 (472)
T ss_dssp EEEECTTTTTTTTS---SSSGGGGG-CCSSCCS---EEEECGGG-SSE---EEE--E--CGG----GS-CSSSSSSCCSS
T ss_pred EEEeCcccCCCCCC---Cchhcccc-CCCCCCC---EEEEcccc-ccC---Ccc--C--chh----hc-ccccccccCcc
Confidence 99999998776542 11122111 111 23 24899995 345 665 2 444 21 11222222333
Q ss_pred CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCcccccCCcceeeecCCC-----HH
Q 012628 343 NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-----KA 415 (459)
Q Consensus 343 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~~~~~g~f~~~~l~-----~~ 415 (459)
+.+.+++.++...|+. . .+ +...++++++++++.+.|+ ++ +.|..+..+.+.+.++ ++.+. .+
T Consensus 355 ~~~~~~~aaa~aal~~---~---~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~v~~~~~~g~~~-~~~~~~~~~~~~ 424 (472)
T 1ohv_A 355 LGDPSKNLLLAEVINI---I---KR--EDLLSNAAHAGKVLLTGLL-DLQARYPQFISRVRGRGTFC-SFDTPDESIRNK 424 (472)
T ss_dssp SSCHHHHHHHHHHHHH---H---HH--TTHHHHHHHHHHHHHHHHH-HHHHHCTTTCEEEEEETTEE-EEECSSHHHHHH
T ss_pred CccHHHHHHHHHHHHH---H---Hh--CCHHHHHHHHHHHHHHHHH-HHHhhCCCcEEeecCCceEE-EEEeCChhHHHH
Confidence 4556666666544421 0 11 2456777788888888887 65 2221122244554444 43442 24
Q ss_pred HHHHHHhcccEEEcCCC----cEEEcc-CChhhHHHHHHHHHHHHhhcC
Q 012628 416 QSDNMTNKWHVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNVS 459 (459)
Q Consensus 416 ~~~~ll~~~gI~v~~gg----Ris~~~-~~~e~i~~~~~~l~~~~~~~~ 459 (459)
+++.|++ +||.+.|+| ||+++. .+++++++++++|.+++++++
T Consensus 425 ~~~~l~~-~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 472 (472)
T 1ohv_A 425 LISIARN-KGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472 (472)
T ss_dssp HHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHH-CCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5677776 599999875 886553 289999999999999998764
No 215
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.89 E-value=2e-21 Score=196.47 Aligned_cols=325 Identities=14% Similarity=0.158 Sum_probs=189.2
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCC---cc---cHHHH----HHHHHHHhcCCCCccccCce-
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EG---LAAFN----KVTAELLFGADNSVLKEQRV- 152 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr----~aia~~l~~~~~~~~~~~~i- 152 (459)
+.|+|..+.. ++++.|++++...+.+....+|+.. .| ..+++ +.+++++... .+++
T Consensus 55 ~~i~lias~n-------~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~------~~~~~ 121 (490)
T 2a7v_A 55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD------PAQWG 121 (490)
T ss_dssp HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC------TTTEE
T ss_pred cCceEECCCC-------CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC------cccCc
Confidence 5677776542 2489999999988754332344321 12 23555 6666665432 3322
Q ss_pred EEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HhhhCCCC--eeeeeeecCCCCCCCHHHHHHH
Q 012628 153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARVP--WSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 153 ~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~G~~--v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
..+++++|++|+..+ +.+.+.|||+|+++++.|.++.. .+...|.. ++.++++ ++++.+|++++++.
T Consensus 122 ~~v~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd-~~~~~iD~d~le~~ 198 (490)
T 2a7v_A 122 VNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALT 198 (490)
T ss_dssp EECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHH
T ss_pred eEEeCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc-cccCCcCHHHHHHH
Confidence 222367889999988 55668899999999998865421 23345554 4444443 34688999999999
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012628 223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQS 301 (459)
Q Consensus 223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (459)
+++. ++++++++.++||+ . .++++|.++|++||+++++|+++. ++...+.... .+ . ..++++.|
T Consensus 199 l~~~--~~klIi~~~s~~~~--~---~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~--~~----~--~aDiv~~S 263 (490)
T 2a7v_A 199 ARLF--RPRLIIAGTSAYAR--L---IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----K--HADIVTTT 263 (490)
T ss_dssp HHHH--CCSEEEECCSSCCS--C---CCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCC--GG----G--TCSEEEEE
T ss_pred Hhhc--CCcEEEEcCCCCCC--c---ccHHHHHHHHHHcCCEEEEccccccccccCCcCCC--CC----C--CCCEEEEC
Confidence 8742 45677778899985 3 358899999999999999999943 3322211111 11 1 23588899
Q ss_pred CCcCcccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH
Q 012628 302 YSKNLGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 367 (459)
Q Consensus 302 ~SK~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 367 (459)
+||.++ |+|.|++++ .+. ++.+++...... ...++++.....+....+. +.+.+
T Consensus 264 ~hK~l~--Gp~GG~i~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~---g~qggp~~~~iaAla~Al~-----~~~~~ 331 (490)
T 2a7v_A 264 THKTLR--GARSGLIFY--RKGVKAVDPKTGREIPYTFEDRINFAVFP---SLQGGPHNHAIAAVAVALK-----QACTP 331 (490)
T ss_dssp SSGGGC--SCSCEEEEE--ECSEEEEETTTEEEEECCCHHHHHHHHTT---TTCCSCCHHHHHHHHHHHH-----HHHSH
T ss_pred CcccCc--cccchheee--ccchhcccccccchhhHHHHHHHHHHhcc---cCCCCchHHHHHHHHHHHH-----HHhhh
Confidence 999874 677799855 222 233333333221 1112333322222222221 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC-CcceeeecC-----CCHHHHHHHHhcccEEEcC----C------
Q 012628 368 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMTK----D------ 431 (459)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~----g------ 431 (459)
+.++..+++.+++++|.+.|. +.| +++... ....++|+. ++.+.+..+|++.||.+.. +
T Consensus 332 ~~~~~~~~~~~na~~L~~~L~-~~G----~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~ 406 (490)
T 2a7v_A 332 MFREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAIT 406 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HcC----cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCC
Confidence 346777888899999999999 877 465542 234455653 4566777777888999863 2
Q ss_pred --C-cEEEc-----cCChhhHHHHHHHHHHHHh
Q 012628 432 --G-RISLA-----GLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 432 --g-Ris~~-----~~~~e~i~~~~~~l~~~~~ 456 (459)
| ||+.. +.++++++++++.|.++++
T Consensus 407 ~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 407 PGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 2 77542 2478999999999998875
No 216
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.88 E-value=2.5e-21 Score=193.57 Aligned_cols=252 Identities=16% Similarity=0.078 Sum_probs=168.3
Q ss_pred cHHHHHHHHHHhhc------CCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC
Q 012628 103 LDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176 (459)
Q Consensus 103 ~~~v~~a~~~~~~~------~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~ 176 (459)
.+.|++++.+.... ...+.| +..+..++++.+++++... ....++++ + +|++|+..+ +.+.+.+
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y-~~~~~~~l~~~la~~~g~~----~~~~~i~~--~-sGt~Ai~~a--l~al~~~ 106 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGY-DDIGRDTLEKVYADVFGAE----AGLVRPQI--I-SGTHAISTA--LFGILRP 106 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCC-SCHHHHHHHHHHHHHTTCS----EECCBTTS--C-SHHHHHHHH--HHTTCCT
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCC-ChhhHHHHHHHHHHHhCCC----ccccccee--e-CHHHHHHHH--HHHhCCC
Confidence 45677777664311 111233 3344567777777775332 11223334 4 779999988 4445779
Q ss_pred CCEEEEcC-CCCcchHHHh----------hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC-CCCCCCCC
Q 012628 177 GAKVLISS-PTWGNHKNIF----------NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGI 244 (459)
Q Consensus 177 gd~Vlv~~-p~y~~~~~~~----------~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~-~p~NPTG~ 244 (459)
||+|++++ |.|..+...+ +..|++++.+|.+ +++.+|++++++++++ ++++++++ +||||+|.
T Consensus 107 Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~--~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~~ 181 (431)
T 3ht4_A 107 GDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLT--EGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATRP 181 (431)
T ss_dssp TCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBC--TTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSSC
T ss_pred CCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCC--CCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCCC
Confidence 99999999 9999888655 4579999999984 3578999999999975 77777777 69999999
Q ss_pred CCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCccc-CCCCcceEEEEeC
Q 012628 245 DPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCS 321 (459)
Q Consensus 245 ~~s~~~l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~ 321 (459)
.++.+++++|+++|++ +|+++|+|++|..+.++. ... ....+++++|+||.+|. .+..-||+++
T Consensus 182 ~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~---~~~-------~~g~Di~~~S~sK~lgg~~~~~GG~v~~--- 248 (431)
T 3ht4_A 182 SFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ---EPC-------HVGADLMAGSLIKNPGGGIVKTGGYIVG--- 248 (431)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC---CGG-------GTTCSEEEEETTSGGGTTTCSSCEEEEE---
T ss_pred cCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC---Ccc-------ccCCeEEEcCccccCCCCCCCceEEEEe---
Confidence 9999999999999999 999999999999887532 111 11346899999999653 1122388866
Q ss_pred ChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012628 322 SSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 393 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 393 (459)
++++++.+.............+++...+.++... .+.+....++..++++++.+.|+ ++|+
T Consensus 249 ~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~~~a~~l~~~L~-~~g~ 309 (431)
T 3ht4_A 249 KEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQG----------FFLAPHVAGQALKGAIFTAAFLE-KLGM 309 (431)
T ss_dssp CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-HHTC
T ss_pred cHHHHHHHHHHhccCCcccccCccHHHHHHHHhH----------hhhHHHHHHHHHHHHHHHHHHHH-hCcC
Confidence 7886666554332211111111211111222111 12245667778888899999999 8873
No 217
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.88 E-value=3.2e-21 Score=191.32 Aligned_cols=215 Identities=16% Similarity=0.101 Sum_probs=152.8
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-----hhCC
Q 012628 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-----NDAR 198 (459)
Q Consensus 124 ~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-----~~~G 198 (459)
+.....+|++.++++... ++.++ +++|++|+..+ +..+.+||+|++++|+|......+ +..|
T Consensus 65 ~~p~~~~l~~~la~l~g~--------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 131 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGG--------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG 131 (400)
T ss_dssp CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCC--------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence 455667899999998643 24555 67779999874 445679999999999998555443 3459
Q ss_pred CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012628 199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278 (459)
Q Consensus 199 ~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~ 278 (459)
++++.++.. |++.+++++++ +++++++++|+||||.+++ +++|+++|++||+++|+|++|.......
T Consensus 132 ~~~~~v~~~-------d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~ 198 (400)
T 3nmy_A 132 LDFSFVDLT-------DPAAFKAAIRA---DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR 198 (400)
T ss_dssp CEEEEECTT-------SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC
T ss_pred eEEEEECCC-------CHHHHHHHhcc---CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 998888762 78999999875 7889999999999999974 8889999999999999999986432210
Q ss_pred CCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcce-EEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhC
Q 012628 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVG 357 (459)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 357 (459)
.+ ..+.++++.|+||.++.+|.++|+ ++ ++.+++..+.+..... ......+...+.++...++
T Consensus 199 ------~~-----~~g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~~~~~l~~~~~----~~g~~~~~~~a~~~l~~l~ 262 (400)
T 3nmy_A 199 ------PL-----SLGADLVVHSATKYLNGHSDMVGGIAV-VGDNAELAEQMAFLQN----SIGGVQGPFDSFLALRGLK 262 (400)
T ss_dssp ------GG-----GGTCSEEEEETTTTTTCSSSCCCEEEE-ECSCHHHHHHHHHHHH----HHCCBCCHHHHHHHHHHHT
T ss_pred ------hh-----hcCCcEEEecCccccCCCCCcceeEEE-EeCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhHh
Confidence 11 123568999999999989999988 43 4677775555544322 2222344444444444443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 358 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
. +....++..++.+.+.+.|+ +.
T Consensus 263 ~----------l~~r~~~~~~~a~~l~~~L~-~~ 285 (400)
T 3nmy_A 263 T----------LPLRMRAHCENALALAQWLE-TH 285 (400)
T ss_dssp T----------HHHHHHHHHHHHHHHHHHHT-TC
T ss_pred H----------HHHHHHHHHHHHHHHHHHHH-cC
Confidence 2 34455666777778888887 65
No 218
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.88 E-value=2e-21 Score=197.75 Aligned_cols=328 Identities=9% Similarity=-0.036 Sum_probs=216.0
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc--------CceEEeecccchhHHHHHHHHHHH-
Q 012628 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE--------QRVATVQGLSGTGSLRLAAALIER- 173 (459)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~--------~~i~~~~t~ggt~a~~l~~~~~~~- 173 (459)
+..+.+.+...+..+ ...|....+..++++.+++++....|.+... ...++ |+|||+++.++......
T Consensus 92 ~~~~~~~~~~~~n~~-~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~~ 168 (481)
T 4e1o_A 92 PSLLGDMLADAINCL-GFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARKN 168 (481)
T ss_dssp HHHHHHHHHHHHCCC-CSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHHH
Confidence 455556666666554 3778888899999999999887766664322 25567 89999999887443321
Q ss_pred ----------------hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEE
Q 012628 174 ----------------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (459)
Q Consensus 174 ----------------~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii 234 (459)
..+++.|++++++|..+...++..|++++.+|+ ++++.+|+++|+++|++. ...+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~vv 246 (481)
T 4e1o_A 169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVC 246 (481)
T ss_dssp HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 125789999999999999998889999999998 457899999999999762 11267778
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCc
Q 012628 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERI 313 (459)
Q Consensus 235 ~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~Ri 313 (459)
.+.++|+||.+ +++++|+++|++||+++++|++|....... + ..+.... ....+.++.+++|.++.| ..+
T Consensus 247 ~~~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~---~--~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~ 317 (481)
T 4e1o_A 247 ATLGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLC---P--EFRGFLKGIEYADSFTFNPSKWMMVH-FDC 317 (481)
T ss_dssp EEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGS---G--GGGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EecCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhC---h--hhHHHhcCcccCCEEEEChHHhcCCC-Cce
Confidence 88899999998 889999999999999999999987754211 0 1111111 111256678999988755 347
Q ss_pred ceEEEEeCChhHHHHHHHHHHhhcccc--------------cc-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012628 314 GAMNVVCSSSDLAARVKSQLKRLARPM--------------YS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 378 (459)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 378 (459)
|+++ ++++............+.... .+ ....+.+.++...+. .+.++++.++..+
T Consensus 318 g~l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~g~~~~~~~~~~ 387 (481)
T 4e1o_A 318 TGFW--VKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VKNLQAHVRHGTE 387 (481)
T ss_dssp EEEE--ESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred EEEE--EeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence 8774 455542211000000000000 00 012333333333331 2346788889999
Q ss_pred HHHHHHHHHhhccCCCCCcccccCC-cceeeec--CC---CHHHHHHHHhcccEEEcCC---C----cEEEccC--Chhh
Q 012628 379 VRQKLFDSLSAKDKSGKDWSFILRQ-IGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAK 443 (459)
Q Consensus 379 ~~~~l~~~L~~~~g~~~~~~~~~~~-~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~e~ 443 (459)
+++++.+.|+ +++ ++++..+. .++++|. +. +.++.+++.++..+.+.++ | |+++++. ++++
T Consensus 388 ~a~~l~~~L~-~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~d 463 (481)
T 4e1o_A 388 MAKYFESLVR-NDP---SFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDD 463 (481)
T ss_dssp HHHHHHHHHH-TCT---TEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred HHHHHHHHHh-cCC---CeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHH
Confidence 9999999999 762 15665443 3333331 22 2345667777633444442 3 9997653 6799
Q ss_pred HHHHHHHHHHHHhhc
Q 012628 444 CEYLADAIIDSYHNV 458 (459)
Q Consensus 444 i~~~~~~l~~~~~~~ 458 (459)
|++++++|+++.+++
T Consensus 464 i~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 464 ILRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988763
No 219
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.88 E-value=6.3e-21 Score=195.82 Aligned_cols=309 Identities=14% Similarity=0.054 Sum_probs=195.9
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH-----hC-CCC------EEEEcCCCC
Q 012628 120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-----YF-PGA------KVLISSPTW 187 (459)
Q Consensus 120 ~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~-----~~-~gd------~Vlv~~p~y 187 (459)
..|....+..++.+.+.+++....|.+ ++++++ |+|||+|+.++...... +. +|| +|+++.++|
T Consensus 138 ~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~--t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h 213 (515)
T 2jis_A 138 YTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIF--CPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECH 213 (515)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred CchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEE--cCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCcc
Confidence 456555565444444333333322332 578888 99999998887544321 12 576 899999999
Q ss_pred cchHHHhhhCCC---CeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 012628 188 GNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK 261 (459)
Q Consensus 188 ~~~~~~~~~~G~---~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~ 261 (459)
..+...++..|. +++.+|++ +++.+|+++|++++++. ..+++++++++|+||||.+ +++++|+++|++|
T Consensus 214 ~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i---~~l~~I~~la~~~ 288 (515)
T 2jis_A 214 YSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF---DPLEAIADVCQRH 288 (515)
T ss_dssp THHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCc---cCHHHHHHHHHHc
Confidence 999999988888 89999983 46889999999999751 2247888889999999999 6788999999999
Q ss_pred CCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEEcCCcCcccCCCCcceEEEEeCCh-hHHHHHH----HHHHh
Q 012628 262 NHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVK----SQLKR 335 (459)
Q Consensus 262 ~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~-~~~~~~~----~~~~~ 335 (459)
|+++++|++|..+.... +... ..+.. ...++++.|++|.++.| .++|++++ +++ +..+... ..+..
T Consensus 289 g~~l~vD~a~~~~~~~~---~~~~--~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~--~~~~~~~~~~~~~~~~yl~~ 360 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLS---QTHR--HLLDGIQRADSVAWNPHKLLAAG-LQCSALLL--QDTSNLLKRCHGSQASYLFQ 360 (515)
T ss_dssp TCEEEEEETTGGGGGGC---TTTG--GGGTTGGGCSEEEECTTSTTCCC-SCCEEEEE--SCCSCHHHHHHCC-------
T ss_pred CCeEEEehhhhhHHHhC---hhhH--hhcCCCccCCEEEECcccccCCC-CCeeEEEE--eChHHHHHHHhcCCchhccC
Confidence 99999999988776431 1100 11111 13457888999998733 56899954 444 3333211 11100
Q ss_pred hcc-------cc-c----c-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc-
Q 012628 336 LAR-------PM-Y----S-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL- 401 (459)
Q Consensus 336 ~~~-------~~-~----~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~- 401 (459)
... .. + + ....+.+.++...+. .+.++++.++..++++++.+.|+ +++ +++++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~-~~~---g~~~~~~ 428 (515)
T 2jis_A 361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG--------DQGLERRIDQAFVLARYLVEEMK-KRE---GFELVME 428 (515)
T ss_dssp --CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH-TST---TEEESSC
T ss_pred CcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHh-cCC---CEEEeCC
Confidence 000 00 0 0 011223333332222 23467788889999999999999 762 155553
Q ss_pred CCcceeeecCC---------CHH-----------HHHHHHhcccEEE-c----CC--C--cEEEc-cC-ChhhHHHHHHH
Q 012628 402 RQIGMFSFTGL---------NKA-----------QSDNMTNKWHVYM-T----KD--G--RISLA-GL-SLAKCEYLADA 450 (459)
Q Consensus 402 ~~~g~f~~~~l---------~~~-----------~~~~ll~~~gI~v-~----~g--g--Ris~~-~~-~~e~i~~~~~~ 450 (459)
+..+.++|... +.+ ..+.+.++ |+.. . ++ + ||+++ .. +++++++++++
T Consensus 429 ~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~ 507 (515)
T 2jis_A 429 PEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNE 507 (515)
T ss_dssp CSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred CCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHH
Confidence 34455555211 111 33455554 7543 2 23 2 99994 22 88999999999
Q ss_pred HHHHHhhc
Q 012628 451 IIDSYHNV 458 (459)
Q Consensus 451 l~~~~~~~ 458 (459)
|+++++++
T Consensus 508 l~~~~~~~ 515 (515)
T 2jis_A 508 LERLGQDL 515 (515)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhC
Confidence 99988764
No 220
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.88 E-value=6.9e-21 Score=190.54 Aligned_cols=164 Identities=20% Similarity=0.094 Sum_probs=127.8
Q ss_pred CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh---
Q 012628 120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF--- 194 (459)
Q Consensus 120 ~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~--- 194 (459)
+.|.. .....++++++++++... +.+++ .+|+++++++.+ ..+.+||+|+++.|+|..+...+
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~~-------~~v~~---~sGt~A~~~~l~--~~~~~gd~vi~~~~~~~~~~~~~~~~ 117 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGGK-------AALAT---ASGHAAQFLALT--TLAQAGDNIVSTPNLYGGTFNQFKVT 117 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCS-------EEEEE---SSHHHHHHHHHH--HHCCTTCEEEECSCCCHHHHHHHHTH
T ss_pred CcccCCCChHHHHHHHHHHHHhCCC-------ceEEe---cCHHHHHHHHHH--HHhCCCCEEEEeCCCchHHHHHHHHH
Confidence 44543 334689999999997542 33444 556999999843 33779999999999998876665
Q ss_pred -hhCCCCeeee-eeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012628 195 -NDARVPWSEY-RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ 272 (459)
Q Consensus 195 -~~~G~~v~~v-~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~ 272 (459)
+..|++++.+ +.+ |++++++++++ +++++++++|+||||.+++ +++|+++|++||+++|+|++|.
T Consensus 118 ~~~~g~~~~~~~~~~-------d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~ 184 (421)
T 2ctz_A 118 LKRLGIEVRFTSREE-------RPEEFLALTDE---KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp HHHTTCEEEECCTTC-------CHHHHHHHCCT---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred HHHcCCEEEEECCCC-------CHHHHHHhhcc---CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcc
Confidence 6789999888 652 78999999875 7889999999999999966 8889999999999999999983
Q ss_pred CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
.+++.. ... . ...++++.|+||.++.+|.|+|++++
T Consensus 185 ~~g~~~---~~~------~-~~~Di~~~s~~K~l~~~g~~~G~~~~ 220 (421)
T 2ctz_A 185 MGGYLL---RPL------A-WGAALVTHSLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp GGGTSC---CGG------G-GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred cccccC---Ccc------c-cCCeEEEECCcccccCCCCcEEEEEE
Confidence 444321 111 1 13568899999999999999999965
No 221
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.88 E-value=2.2e-21 Score=196.96 Aligned_cols=327 Identities=11% Similarity=-0.005 Sum_probs=211.8
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCcccc-------CceEEeecccchhHHHHHHHHHHHh-
Q 012628 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-------QRVATVQGLSGTGSLRLAAALIERY- 174 (459)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~-------~~i~~~~t~ggt~a~~l~~~~~~~~- 174 (459)
+..+.+.+...+..+ ...|....+..++++.+++++....|.+... ...++ |+|||+++.++.......
T Consensus 87 ~~~~~~~l~~~~n~~-~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~~ 163 (475)
T 3k40_A 87 PAIVADMLSGAIACI-GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAKK 163 (475)
T ss_dssp HHHHHHHHHHHHCCC-SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHHH
Confidence 344555566666543 3668788888999999999887777764321 25677 899999988874333211
Q ss_pred ----------------CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEEEe
Q 012628 175 ----------------FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLH 235 (459)
Q Consensus 175 ----------------~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ii~ 235 (459)
.+++.|+++.++|..+...++..|++++.+|++ +++ +|+++|+++|++. ...+++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~ 240 (475)
T 3k40_A 164 LKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVV 240 (475)
T ss_dssp HHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEE
Confidence 135789999999999999999999999999984 456 9999999999762 112567778
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEEcCCcCcccCCCCcc
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIG 314 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG 314 (459)
+.++|+||.+ +++++|+++|++||+++++|++|....... + ..+.... ....+.++.+++|.++.| ..+|
T Consensus 241 ~~~~t~~G~~---~~l~~I~~la~~~~~~lhvD~A~~~~~~~~---~--~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g 311 (475)
T 3k40_A 241 TLGTTNSCAF---DYLDECGPVGNKHNLWIHVDAAYAGSAFIC---P--EYRHLMKGIESADSFNFNPHKWMLVN-FDCS 311 (475)
T ss_dssp EBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGS---G--GGGGGGTTGGGCSEEEECHHHHSSCC-SSCE
T ss_pred EecCCCCcCc---CCHHHHHHHHHHhCCeEEEeHHhHHHHHhC---H--hhHHHhcCcccCCEEEECchhccCCC-CceE
Confidence 8899999999 889999999999999999999987643211 0 1111111 112357778999977633 4478
Q ss_pred eEEEEeCChhHHHHHHHHHHhhcccc----------c---cC--CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012628 315 AMNVVCSSSDLAARVKSQLKRLARPM----------Y---SN--PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 379 (459)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~----------~---~~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 379 (459)
+++ +++++...........+.... + .+ ...+.+.++...+. .+.++++.++..++
T Consensus 312 ~l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~ 381 (475)
T 3k40_A 312 AMW--LKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNF 381 (475)
T ss_dssp EEE--ESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred EEE--EeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence 884 455543211111000000000 0 00 01222233322221 24467888899999
Q ss_pred HHHHHHHHhhccCCCCCcccccC-Ccceeeec--CC---CHHHHHHHHhcccEEEcCC---C----cEEEccC--ChhhH
Q 012628 380 RQKLFDSLSAKDKSGKDWSFILR-QIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAKC 444 (459)
Q Consensus 380 ~~~l~~~L~~~~g~~~~~~~~~~-~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~e~i 444 (459)
++++.+.|+ +++ ++++..+ ..++++|. +. +.++.++|.++.++.+.++ | |+++++. ++++|
T Consensus 382 a~~l~~~L~-~~~---g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di 457 (475)
T 3k40_A 382 AKQFGDLCV-ADS---RFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDM 457 (475)
T ss_dssp HHHHHHHHH-HST---TEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred HHHHHHHHh-cCC---CEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHH
Confidence 999999999 762 1566544 33443331 32 2355677777644444432 3 9998753 78999
Q ss_pred HHHHHHHHHHHhhc
Q 012628 445 EYLADAIIDSYHNV 458 (459)
Q Consensus 445 ~~~~~~l~~~~~~~ 458 (459)
++++++|+++.+++
T Consensus 458 ~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 458 EYSWKEVSAAADEM 471 (475)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 222
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.87 E-value=4.7e-21 Score=192.84 Aligned_cols=277 Identities=10% Similarity=0.007 Sum_probs=175.0
Q ss_pred cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh----hhCCCCeee
Q 012628 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSE 203 (459)
Q Consensus 128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~ 203 (459)
..++++.++++++.. ++++++ +.|+|.+.+.+...+ .+.+||+|++++|+|+.+...+ +..|++++.
T Consensus 110 ~~~~~~~la~~~g~~------~~~i~~--~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~ 180 (438)
T 1wyu_A 110 TFEYQTMIAELAGLE------IANASM--YDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT 180 (438)
T ss_dssp HHHHHHHHHHHHTSS------EECSCB--SSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCC------ccceEE--eCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence 457777778776432 567777 899994444442122 3568999999999999887665 448999999
Q ss_pred eeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012628 204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA 283 (459)
Q Consensus 204 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~ 283 (459)
+|. + ++.+|+++ +++ +++++++++| ||||.+. ++++|+++|+++|+++++|..-+.++... .
T Consensus 181 v~~--~-~~~~d~~~----i~~---~t~~v~i~~p-n~tG~~~---~l~~i~~la~~~g~~vivd~d~~a~g~~~----~ 242 (438)
T 1wyu_A 181 LPL--E-GGRTPLPE----VGE---EVGAVVVQNP-NFLGALE---DLGPFAEAAHGAGALFVAVADPLSLGVLK----P 242 (438)
T ss_dssp ECC--B-TTBCCCCC----CCT---TEEEEEEESS-CTTSBCC---CHHHHHHHHHHTTCEEEEECCTTGGGTBC----C
T ss_pred EcC--c-CCccCHHH----hCC---CeEEEEEECC-CCCeEEe---cHHHHHHHHHHcCCEEEEEechhhccCcC----C
Confidence 987 2 35788776 443 7888888999 9999994 78899999999999999663312222110 1
Q ss_pred hHHHHHHhcCCeEEEEEcCCcCc----ccCCCCcceEEEEeCChhHHHHHHHH------------------------HHh
Q 012628 284 SSVRLFATRGMELLVAQSYSKNL----GLYAERIGAMNVVCSSSDLAARVKSQ------------------------LKR 335 (459)
Q Consensus 284 ~~~~~~~~~~~~~i~~~S~SK~~----~~~G~RiG~~~~v~~~~~~~~~~~~~------------------------~~~ 335 (459)
. .. . +.++++.| +|.| ++.|.|+||+++ +++..+.+... .+.
T Consensus 243 -~-~~---~-g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 243 -P-GA---Y-GADIAVGD-GQSLGLPMGFGGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp -H-HH---H-TCSEEEEE-CTTTTCCCGGGCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred -C-cc---C-CCCEEEEC-CcccCCCccCCCCCeeEEEE---cHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 1 11 1 23355556 5554 456779999976 66643332100 000
Q ss_pred hccccccCC---chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcccccCCcceee---
Q 012628 336 LARPMYSNP---PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFS--- 408 (459)
Q Consensus 336 ~~~~~~~~~---~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~g~f~--- 408 (459)
. .. +.+. ..+++..+...+. +.. .+.++++.+++.++++++.+.|+ ++ | +++..+. .+|.
T Consensus 313 ~-~~-t~~~~~~~~~~a~~aa~~l~---~~~--~~g~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~-~~~~~~~ 379 (438)
T 1wyu_A 313 A-KA-KSNITTNAQLTALMGAMYLA---ALG--PEGLREVALKSVEMAHKLHALLL-EVPG----VRPFTPK-PFFNEFA 379 (438)
T ss_dssp G-GS-SCCCCSCCHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHT-TSTT----CEECSCS-SBCSEEE
T ss_pred h-cc-cCCccchHHHHHHHHHHHHH---HhC--HHHHHHHHHHHHHHHHHHHHHHh-cCCC----eEECCCC-CeEEEEE
Confidence 0 11 1122 2222222221111 000 23467888999999999999999 87 5 5655543 3332
Q ss_pred e-cCCCH-HHHHHHHhcccEEE--cCC-----C--cEEEccC-ChhhHHHHHHHHHHHH
Q 012628 409 F-TGLNK-AQSDNMTNKWHVYM--TKD-----G--RISLAGL-SLAKCEYLADAIIDSY 455 (459)
Q Consensus 409 ~-~~l~~-~~~~~ll~~~gI~v--~~g-----g--Ris~~~~-~~e~i~~~~~~l~~~~ 455 (459)
+ .+.+. ++.++|.+ +||.+ .++ + |||++.. +++++++++++|++++
T Consensus 380 ~~~~~~~~~~~~~L~~-~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 380 LALPKDPEAVRRALAE-RGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp EECSSCHHHHHHHHHH-TTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHH-CCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 1 13343 55667766 59998 443 3 9998843 7899999999998764
No 223
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.87 E-value=2.2e-20 Score=185.03 Aligned_cols=300 Identities=13% Similarity=0.093 Sum_probs=192.2
Q ss_pred ccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHH------
Q 012628 100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER------ 173 (459)
Q Consensus 100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~------ 173 (459)
+.+++.+.+++.+.+... .|.+..+..++|+++++++.. +++++ +++|+++++++ +...
T Consensus 11 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sGt~a~~~a--l~~~~~~~~~ 75 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDSK---MFTMGEYVKQYETQFAKTFGS--------KYAVM--VSSGSTANLLM--IAALFFTKKP 75 (390)
T ss_dssp CCCCHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTSSSSC
T ss_pred CCCCHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHHhhhhc
Confidence 445889999999888652 466788899999999999753 24556 78888999988 3333
Q ss_pred -hCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012628 174 -YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE 252 (459)
Q Consensus 174 -~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~ 252 (459)
+.+||+|+++.|+|..+...++..|++++.+|+++ +++.+|++.+++++++ ++++++++ |++|.. .+++
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~---~~~~v~~~---~~~g~~---~~~~ 145 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI-NTLNIDIESLKEAVTD---STKAILTV---NLLGNP---NNFD 145 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHCCT---TEEEEEEE---CGGGCC---CCHH
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc-cccCcCHHHHHHHhCc---CCeEEEEE---CCccCh---hhHH
Confidence 56899999999999999999999999999999853 3588999999999975 67777765 355655 7889
Q ss_pred HHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc--CCcCcccCCCCcceEEEEeCChhHHHHHH
Q 012628 253 KIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS--YSKNLGLYAERIGAMNVVCSSSDLAARVK 330 (459)
Q Consensus 253 ~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--~SK~~~~~G~RiG~~~~v~~~~~~~~~~~ 330 (459)
+|.++|++||+++|+|++|......+ .... ... .++.+.| .+|.++ +|. .|+++ +.++++.+++.
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~~~--~~~~------g~~-~~~~~~s~~~~k~~~-~g~-gG~~~--~~~~~l~~~~~ 212 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGATFN--NKCA------GTF-GLMGTFSSFYSNHIA-TME-GGCIV--TDDEEIYHILL 212 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCEET--TEET------TSS-SSEEEEECCTTSSSC-SSS-CEEEE--ESCHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEECcCcccCEEC--Cccc------ccc-cceEEEEccCCCCCc-cCC-ceEEE--eCCHHHHHHHH
Confidence 99999999999999999977332111 1110 111 1222222 345554 343 37774 44445444433
Q ss_pred HHHHhhc-c--------------------------ccccCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012628 331 SQLKRLA-R--------------------------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL 383 (459)
Q Consensus 331 ~~~~~~~-~--------------------------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 383 (459)
....... + +.....+.+.+.++...| +.+++..++.+++++++
T Consensus 213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~l 282 (390)
T 3b8x_A 213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----------KKLPRFISVRRKNAEYF 282 (390)
T ss_dssp HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 2211100 0 000013334333332222 23567778888889999
Q ss_pred HHHHhhccCCCCCcccccC--Cccee-ee---c---CCCHHHHHHHHhcccEEEcC---C--------------------
Q 012628 384 FDSLSAKDKSGKDWSFILR--QIGMF-SF---T---GLNKAQSDNMTNKWHVYMTK---D-------------------- 431 (459)
Q Consensus 384 ~~~L~~~~g~~~~~~~~~~--~~g~f-~~---~---~l~~~~~~~ll~~~gI~v~~---g-------------------- 431 (459)
.+.|+ +++ ++++..+ ..+++ ++ . +.+.+.+...|+++||.+.+ +
T Consensus 283 ~~~L~-~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (390)
T 3b8x_A 283 LDKFK-DHP---YLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNV 358 (390)
T ss_dssp HHHHT-TCS---SEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCC
T ss_pred HHHhc-CCC---CcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCC
Confidence 99998 762 1444332 23332 22 2 24555544444456997764 1
Q ss_pred --------C--cEEEcc-CChhhHHHHHHHH
Q 012628 432 --------G--RISLAG-LSLAKCEYLADAI 451 (459)
Q Consensus 432 --------g--Ris~~~-~~~e~i~~~~~~l 451 (459)
+ ||++.. ++++|+++++++|
T Consensus 359 ~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 359 DNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 0 566554 3889999998876
No 224
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.85 E-value=4e-20 Score=194.97 Aligned_cols=177 Identities=11% Similarity=-0.036 Sum_probs=125.8
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-hhhCCCCe
Q 012628 123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPW 201 (459)
Q Consensus 123 ~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~G~~v 201 (459)
.+..-..++++.+|++++.. ..+++ ++|+++++.++ +.+.+.+||+|+++.|+|..+... ++..|+++
T Consensus 170 ~~~~~i~e~e~~lA~~~gae-------~~i~v--~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~ 238 (730)
T 1c4k_A 170 IHEGPAVAAEKHAARVYNAD-------KTYFV--LGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238 (730)
T ss_dssp TTBTHHHHHHHHHHHHTTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred CChHHHHHHHHHHHHHHCCC-------cEEEE--CCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEE
Confidence 34455689999999996542 34666 88888999998 555578999999999999988777 88899999
Q ss_pred eeeeeecCCCCC----CCHHHH-----HHHHHcCCCC---c----EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 202 SEYRYYDPKTVG----LDFEGM-----IADIKAAPGG---S----FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 202 ~~v~~~~~~~~~----~d~e~l-----~~~i~~~~~~---~----~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
+.++...+ .++ +|++.+ ++++++.++. + +++++++| ||||.+ .++++|+++|++||+++
T Consensus 239 v~v~~~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v---~dl~~I~~la~~~g~~l 313 (730)
T 1c4k_A 239 VYLQTNRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTI---YNAHEVVKRIGHLCDYI 313 (730)
T ss_dssp EEECEEEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEE---ECHHHHHHHHGGGBSEE
T ss_pred EEEeCCcc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCee---cCHHHHHHHHHHcCCeE
Confidence 99887532 333 789988 8888753101 3 67777888 699999 56889999999999999
Q ss_pred EEeccCCCC-CCCCCCCChhHHHH--HHhcCCeEEEEEcCCcCcccCCCCcceEE
Q 012628 266 FFDVAYQGF-ASGSLDNDASSVRL--FATRGMELLVAQSYSKNLGLYAERIGAMN 317 (459)
Q Consensus 266 i~Deay~~~-~~~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (459)
++|++|... .+++.......+.. +..+.++++++.|+||.+ +|.+.|+++
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I 366 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQI 366 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEE
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEE
Confidence 999998643 33210000001100 001234679999999985 566666654
No 225
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.84 E-value=2.8e-20 Score=182.77 Aligned_cols=317 Identities=12% Similarity=0.003 Sum_probs=193.1
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCC--------CCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchh
Q 012628 93 YRTEELQPYVLDVVKKAENLMLERGEN--------KEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (459)
Q Consensus 93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~--------~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (459)
|+|..++.++++.|++++.+.+.+... ...+ -..-+++.|+.++++++... +.+|++ .|.|||+
T Consensus 29 yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~-----~~evif-~t~~~T~ 102 (386)
T 3qm2_A 29 FNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPS-----NYKVLF-CHGGGRG 102 (386)
T ss_dssp EECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCT-----TEEEEE-EESCTTH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEE-EcCCchH
Confidence 334445566799999999876532100 0111 13467899999999986531 245766 1489999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCC
Q 012628 163 SLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (459)
Q Consensus 163 a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~ 239 (459)
+++++ +...+.+||+|++..-+...+ ...++..| ++..+|.+ .+++..++++.++.++++ +++++.+++..
T Consensus 103 a~n~a--i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~---~t~lV~~~h~e 176 (386)
T 3qm2_A 103 QFAGV--PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSD---NAAYLHYCPNE 176 (386)
T ss_dssp HHHHH--HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCT---TCSCEEECSEE
T ss_pred HHHHH--HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCC---CCcEEEEECCc
Confidence 99998 455577999987655444343 33455678 88888874 123333777877776664 67778888888
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEE
Q 012628 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (459)
Q Consensus 240 NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (459)
|.||+.+ +++++|+ +|+++++|.+ |.++.-+.+. +..+ +.+.|..|.+|++| +|++++
T Consensus 177 t~tG~~i--~pi~~i~-----~g~~~~vDa~-qs~g~~pidv---------~~~~--~~~~s~hK~lGP~G--~g~l~v- 234 (386)
T 3qm2_A 177 TIDGIAI--DETPDFG-----PEVVVTADFS-STILSAPLDV---------SRYG--VIYAGAQKNIGPAG--LTLVIV- 234 (386)
T ss_dssp TTTTEEC--CCCCCCC-----TTCCEEEECT-TTTTSSCCCG---------GGCS--EEEEETTTTTCCTT--EEEEEE-
T ss_pred CCcCEec--Cchhhhc-----CCCEEEEEcc-cccCCCCCCc---------cccC--EEEEecccccCCCc--cEEEEE-
Confidence 8889952 2344453 7999999999 7776543322 2222 45689999999888 799876
Q ss_pred eCChhHHHH-------H---HHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 012628 320 CSSSDLAAR-------V---KSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLS 388 (459)
Q Consensus 320 ~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~ 388 (459)
.++..++ + ........+.. .++..+..+....| ++.. .. .++++.++.+++++++++.|+
T Consensus 235 --~~~~~~~~~~~~p~~~~~~~~~~~~~~~g--Tp~v~~i~~l~~Al---~~~~--~~gG~~~i~~~~~~l~~~l~~~l~ 305 (386)
T 3qm2_A 235 --REDLLGKAHESCPSILDYTVLNDNDSMFN--TPPTFAWYLSGLVF---KWLK--AQGGVAAMHKINQQKAELLYGVID 305 (386)
T ss_dssp --EGGGCSCCCTTSCGGGCHHHHHHC---------CCSHHHHHHHHH---HHHH--HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHhhhcccCCcHHHHHHHhhcCCCCC--CCcHHHHHHHHHHH---HHHH--HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4442111 0 11111111122 22322222222222 1110 12 368889999999999999999
Q ss_pred hccCCCCCcccc-cC--C-ccee--eecC--CCHHHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHHHHH
Q 012628 389 AKDKSGKDWSFI-LR--Q-IGMF--SFTG--LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIID 453 (459)
Q Consensus 389 ~~~g~~~~~~~~-~~--~-~g~f--~~~~--l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~l~~ 453 (459)
++|+ +... .+ . .+.. .+.+ ++.+++.. ++++||.+.+| | |+|+... |+++|++++++|++
T Consensus 306 -~~~~---~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~ 380 (386)
T 3qm2_A 306 -NSDF---YRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMID 380 (386)
T ss_dssp -TCSS---EECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred -HCCC---cccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 8763 1111 11 1 1222 2222 34455555 45579999886 3 9998876 89999999999999
Q ss_pred HHhh
Q 012628 454 SYHN 457 (459)
Q Consensus 454 ~~~~ 457 (459)
+.++
T Consensus 381 ~~~~ 384 (386)
T 3qm2_A 381 FERR 384 (386)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 226
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.82 E-value=1.9e-19 Score=191.40 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=124.4
Q ss_pred CcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeee
Q 012628 125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY 204 (459)
Q Consensus 125 ~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v 204 (459)
..-+.++++.+++++.. .+.+++ ++|+++++.++ +.+.+.+||+|+++.|+|..+...+...|++++.+
T Consensus 204 ~g~v~~~ee~la~l~G~-------d~~i~~--~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v 272 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGA-------DRSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYM 272 (755)
T ss_dssp CHHHHHHHHHHHHHHTC-------SEEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEE
T ss_pred ccHHHHHHHHHHHHhCC-------CceEEE--CCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEE
Confidence 34457788888888653 244666 88889999998 55557899999999999999888888899999999
Q ss_pred eeecCCCCC----C-----CHHHHHHHHHcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012628 205 RYYDPKTVG----L-----DFEGMIADIKAAPG-------GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD 268 (459)
Q Consensus 205 ~~~~~~~~~----~-----d~e~l~~~i~~~~~-------~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D 268 (459)
+...+ +++ + |++.+++++++.++ +++++++++| ||||.+ .++++|+++|++||+++++|
T Consensus 273 ~~~~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v---~dl~~I~~ia~~~~~~livD 347 (755)
T 2vyc_A 273 VPSRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVC---YNAKEAQDLLEKTSDRLHFD 347 (755)
T ss_dssp CCCBC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEE---ECHHHHHHHHTTTCSEEEEE
T ss_pred eCCCC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCcee---cCHHHHHHHHHHcCCEEEEE
Confidence 87532 333 5 99999999976321 1236667788 799999 66889999999999999999
Q ss_pred ccCCCCC-CCCCCCChhHHHHH--Hh-cCCeEEEEEcCCcCcccCCCCcceEEE
Q 012628 269 VAYQGFA-SGSLDNDASSVRLF--AT-RGMELLVAQSYSKNLGLYAERIGAMNV 318 (459)
Q Consensus 269 eay~~~~-~~~~~~~~~~~~~~--~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (459)
++|.... +++...+...+ .. .+ ..++++++.|+||.+ +|.+.|.++.
T Consensus 348 eA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~ 398 (755)
T 2vyc_A 348 EAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYIH 398 (755)
T ss_dssp CTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEE
T ss_pred CcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeeee
Confidence 9987532 22100000111 00 11 234778999999985 4666555443
No 227
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=180.11 Aligned_cols=308 Identities=14% Similarity=0.076 Sum_probs=196.6
Q ss_pred CCccCcHHHHHHHHHHhhcCCC--------CCCCC--CcccHHHHHHHHHHHhcCCCCccccCceEEeec-ccchhHHHH
Q 012628 98 LQPYVLDVVKKAENLMLERGEN--------KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG-LSGTGSLRL 166 (459)
Q Consensus 98 ~~~~~~~~v~~a~~~~~~~~~~--------~~Y~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t-~ggt~a~~l 166 (459)
+..++|+.|.+++.+.+.+... ...++ ..-+++.|+.++++++... +.+|++ + .|||+++++
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~-----~~evif--~t~~~T~a~n~ 92 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-----NYKVIF--LQGGGCGQFSA 92 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE--ESSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE--EcCchHHHHHH
Confidence 4445699999999997742100 00111 1245778899999986531 246766 5 799999999
Q ss_pred HHHHHHHhCC--CCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012628 167 AAALIERYFP--GAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (459)
Q Consensus 167 ~~~~~~~~~~--gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT 242 (459)
+ +...+.+ ||+|++..-++... ...++..|.+++.+|. +++++.+++.++.++++ +++++.+++..|.|
T Consensus 93 a--~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~--~~~~~~~~~~~~~~i~~---~t~lV~~~h~et~t 165 (377)
T 3e77_A 93 V--PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK--LGSYTKIPDPSTWNLNP---DASYVYYCANETVH 165 (377)
T ss_dssp H--HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC--CSSSCSCCCGGGCCCCT---TCSCEEEESEETTT
T ss_pred H--HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc--CCCcCCCCChHHhccCC---CccEEEEeCccCch
Confidence 8 4444544 99998777655443 3455677888777776 34556777777655543 67777888888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCC
Q 012628 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~ 322 (459)
|++.+. +|+++|+++++|.+ |.++.-+.+. +..+ +++.|..|.+|++| +|++++ .
T Consensus 166 G~~~pi--------i~~~~~~~~~vD~~-q~~g~~~id~---------~~~~--~~~~s~~K~~gp~G--~g~l~~---~ 220 (377)
T 3e77_A 166 GVEFDF--------IPDVKGAVLVCDMS-SNFLSKPVDV---------SKFG--VIFAGAQKNVGSAG--VTVVIV---R 220 (377)
T ss_dssp TEECSS--------CCCCTTCCEEEECT-TTTTSSCCCG---------GGCS--EEEEEGGGTTSCTT--CEEEEE---E
T ss_pred heEchh--------hhccCCCEEEEEcc-cccCCCCCch---------hhcC--EEEEecccccCCCc--cEEEEE---c
Confidence 999664 36789999999999 7776543322 2223 36789999999999 788866 3
Q ss_pred hhHHHH-------H---HHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 323 SDLAAR-------V---KSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 323 ~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
++.+++ + ...... ...+..++..+..++...|+ +.. ++ .++.+.++.+++.+++++.|+ ++
T Consensus 221 ~~~l~~~~~~~p~~~~~~~~~~~--~~~~~Tp~v~~i~~l~~al~---~l~--~~GG~~~i~~~~~~l~~~l~~~L~-~~ 292 (377)
T 3e77_A 221 DDLLGFALRECPSVLEYKVQAGN--SSLYNTPPCFSIYVMGLVLE---WIK--NNGGAAAMEKLSSIKSQTIYEIID-NS 292 (377)
T ss_dssp TTSCSCCCTTSCGGGCHHHHHTT--TTCSSCCCHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHHHHHH-TS
T ss_pred HHHHhhccCCCCchhhHHHHhhc--CCCCCCchHHHHHHHHHHHH---HHH--HccCHHHHHHHHHHHHHHHHHHHH-hc
Confidence 332111 1 111111 11222444444333333321 110 12 368899999999999999999 87
Q ss_pred -CCCCCccccc--C--Ccce---eeecCCC--H----HHHHHHHhcccEEEcCC----C--cEEEccC-ChhhHHHHHHH
Q 012628 392 -KSGKDWSFIL--R--QIGM---FSFTGLN--K----AQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADA 450 (459)
Q Consensus 392 -g~~~~~~~~~--~--~~g~---f~~~~l~--~----~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~i~~~~~~ 450 (459)
| +.... + ..+. |.+.+++ . .++..+. ++||.+.+| | |+|+... ++++++.++++
T Consensus 293 ~g----~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~a 367 (377)
T 3e77_A 293 QG----FYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF 367 (377)
T ss_dssp TT----SEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred CC----ceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHH
Confidence 4 33221 1 1222 3334442 2 3344554 469999887 3 9998876 89999999999
Q ss_pred HHHHHhh
Q 012628 451 IIDSYHN 457 (459)
Q Consensus 451 l~~~~~~ 457 (459)
|++++++
T Consensus 368 l~~~~~~ 374 (377)
T 3e77_A 368 MKKFLEM 374 (377)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 228
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.81 E-value=2.8e-18 Score=171.23 Aligned_cols=332 Identities=13% Similarity=0.046 Sum_probs=202.3
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccch
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (459)
+...||+..|.-....++. +|.|.+++.+.++... +...+..-..++.+.+++.+.. .+.+.+ +++|+
T Consensus 86 G~~ylD~~~g~~~~~lGH~--hp~v~~Av~~q~~~~~-~~~~~~~~~~~lae~l~~~~p~-------~~~v~f--~~SGs 153 (454)
T 4ao9_A 86 GHRYADFIAEYTAGVYGHS--APEIRDAVIEAMQGGI-NLTGHNLLEGRLARLICERFPQ-------IEQLRF--TNSGT 153 (454)
T ss_dssp CCEEEESSGGGGTTTTCSC--CHHHHHHHHHHHHTCS-CCCSEESSHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred CCEEEEccccHHhhcccCC--CHHHHHHHHHHHhcCC-CccCCcHHHHHHHHHHHHhCCC-------CCEEEE--eCchH
Confidence 4578898877643334443 7899999998887643 2222344456777888877532 477888 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhC-C-----CCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R-----VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 162 ~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-G-----~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
+|++.+.++...+...++|+..+.+|.+....+-.. + .....+|+ -|++.+++.+++..+....+|+
T Consensus 154 EA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 154 EANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEEEE
T ss_pred HHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEEEe
Confidence 999999888777666689999999987653222111 1 11122222 3789999999876556677776
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCCCcc
Q 012628 236 GCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314 (459)
Q Consensus 236 ~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 314 (459)
...+...|.+ ++++.+++|.++|++||+++|+||+..+ ..+ ..+.. ...+-.++++ +++|.+| .|+.+|
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G----~~~a~-e~~gv~PDi~---t~gK~lg-gG~Pig 296 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLA----PHGLA-NKLGIRSDLT---TLGKYIG-GGMSFG 296 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGS----TTCHH-HHHTCCCSEE---EEEGGGG-TTSSCE
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCc----cccch-hccCCCCcEE---EeccccC-CCCcce
Confidence 6667777865 5677899999999999999999999653 221 11122 2233345554 6899998 789999
Q ss_pred eEEEEeCChhHHHHHHHHHHhh-ccccccCCchHHHHHH---HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012628 315 AMNVVCSSSDLAARVKSQLKRL-ARPMYSNPPVHGARIV---ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 390 (459)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 390 (459)
++.+ .++.++.+....... +..++ +.+.++..++ ...++++++. ++..+.-+..++.|.+.+. +
T Consensus 297 a~~~---~~ei~~~~~~~~~~~~h~~T~-~gnPla~AAala~L~~l~~~~~~-------~~~~~~g~~l~~~L~~l~~-~ 364 (454)
T 4ao9_A 297 AFGG---RADVMALFDPRTGPLAHSGTF-NNNVMTMAAGYAGLTKLFTPEAA-------GALAERGEALRARLNALCA-N 364 (454)
T ss_dssp EEEE---CHHHHGGGCTTTCSCCCCCTT-TTCHHHHHHHHHHHHHTSCHHHH-------HHHHHHHHHHHHHHHHHHH-H
T ss_pred eeee---HHHHHHHHhhccCCccccCCC-CCCHHHHHHHHHHHHHHhccChh-------HHHHHHHHHHHHHHHHHHh-h
Confidence 9866 777333321111111 22223 3333443333 3344544331 2222222223333333333 3
Q ss_pred cCCCCCcccccCCcceeee--c-----------CCCH----HHHHHHHhcccEEEcCCCcEEEcc-CChhhHHHHHHHHH
Q 012628 391 DKSGKDWSFILRQIGMFSF--T-----------GLNK----AQSDNMTNKWHVYMTKDGRISLAG-LSLAKCEYLADAII 452 (459)
Q Consensus 391 ~g~~~~~~~~~~~~g~f~~--~-----------~l~~----~~~~~ll~~~gI~v~~ggRis~~~-~~~e~i~~~~~~l~ 452 (459)
.+++. .+...|.++.+ + ..+. .++..++++ ||++.|.|++.++. .|+++|++++++|+
T Consensus 365 ~~~~~---~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~~~~~~s~~~T~~dId~~l~al~ 440 (454)
T 4ao9_A 365 EGVAM---QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPRGFVVLSLPLTDADIDRYVAAIG 440 (454)
T ss_dssp HTBSC---EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTTCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCCE---EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 44321 12222333311 1 1122 234567774 99999999765443 39999999999999
Q ss_pred HHHhhc
Q 012628 453 DSYHNV 458 (459)
Q Consensus 453 ~~~~~~ 458 (459)
+++.+.
T Consensus 441 ~~l~~~ 446 (454)
T 4ao9_A 441 SFIGGH 446 (454)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999864
No 229
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.81 E-value=6.1e-19 Score=171.69 Aligned_cols=315 Identities=10% Similarity=0.033 Sum_probs=195.9
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCC-------CC-CC--CcccHHHHHHHHHHHhcCCCCccccCceE
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-------EY-LP--IEGLAAFNKVTAELLFGADNSVLKEQRVA 153 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-------~Y-~~--~~g~~~lr~aia~~l~~~~~~~~~~~~i~ 153 (459)
.+++|+.| +.++++.|++++.+.+...... .+ ++ ..-+++.|+.++++++... +.+|+
T Consensus 5 ~~~~f~pg-------pt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~-----~~~v~ 72 (361)
T 3m5u_A 5 RKINFSAG-------PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELND-----DYEVL 72 (361)
T ss_dssp CCEECCSS-------SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCT-----TEEEE
T ss_pred ceEeecCC-------CCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEE
Confidence 56677754 3446999999999877421000 01 11 2345788889999986531 33554
Q ss_pred EeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcE
Q 012628 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF 231 (459)
Q Consensus 154 ~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 231 (459)
+ .|.|||++++++ +...+ +||++++..-+..++ ...++..|+++..++.+.+..+.++++. + +++ +++
T Consensus 73 f-~t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~---~t~ 142 (361)
T 3m5u_A 73 F-LQGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSD---NAD 142 (361)
T ss_dssp E-ESSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCT---TSS
T ss_pred E-EcCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCC---CCC
Confidence 3 289999999998 44445 888663222223233 3345678999999998432212256665 3 654 677
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCCC
Q 012628 232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (459)
Q Consensus 232 ~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (459)
++.+++.+|.||++.+. | ++ +|+++++|.+ |.++..+.+.+ ...+++.|.+|.+|++|
T Consensus 143 lv~~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~-q~~g~~~id~~-----------~~d~~~~s~~K~~gp~G- 200 (361)
T 3m5u_A 143 YAYICSNNTIYGTQYQN-----Y---PK-TKTPLIVDAS-SDFFSRKVDFS-----------NIALFYGGVQKNAGISG- 200 (361)
T ss_dssp EEEEESEETTTTEECSS-----C---CC-CSSCEEEECG-GGTTSSCCCCT-----------TEEEEEEETTTTSSCTT-
T ss_pred EEEEeCCCCCcceeCCc-----c---cc-cCCEEEEEcc-cccCCCCCCcc-----------cCCEEEEechhccCCCc-
Confidence 88888888888998652 3 33 4999999999 77765433221 23578889999999988
Q ss_pred CcceEEEEeCChhHHHHHHH----H---HHhh--ccccccCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHHH
Q 012628 312 RIGAMNVVCSSSDLAARVKS----Q---LKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKNVR 380 (459)
Q Consensus 312 RiG~~~~v~~~~~~~~~~~~----~---~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~~~ 380 (459)
+|++++ .++..+.+.. . .... ....+..++..+...+...|+ +. .+ .++++.++.++++
T Consensus 201 -~g~l~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~---~l---~~~gG~~~i~~~~~~l~ 270 (361)
T 3m5u_A 201 -LSCIFI---RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD---WL---LNQGGLDKVHEKNSQKA 270 (361)
T ss_dssp -CEEEEE---EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH---HH---HTTTCHHHHHHHHHHHH
T ss_pred -cEEEEE---cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH---HH---HHccCHHHHHHHHHHHH
Confidence 799877 6665544432 0 0000 111222344443333322221 10 11 2578889999999
Q ss_pred HHHHHHHhhccCCCCCc-ccc-cC---Cccee--eecC---CCHHHHHHHHhcccEEEcCC----C--cEEEccC-Chhh
Q 012628 381 QKLFDSLSAKDKSGKDW-SFI-LR---QIGMF--SFTG---LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAK 443 (459)
Q Consensus 381 ~~l~~~L~~~~g~~~~~-~~~-~~---~~g~f--~~~~---l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~e~ 443 (459)
+++++.|+ +++. + ... .+ ..+.. .+.+ ++.++. ..++++||.+.+| | |+|+... ++++
T Consensus 271 ~~l~~~L~-~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~-~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~ed 345 (361)
T 3m5u_A 271 TMLYECID-LSNG---FYKGHADKKDRSLMNVSFNIAKNKDLEPLFV-KEAEEAGMIGLKGHRILGGIRASIYNALNLDQ 345 (361)
T ss_dssp HHHHHHHH-TSTT---SEEESSCGGGBCSSEEEEEESSCTTHHHHHH-HHHHHTTEECCBCCTTTCSEEEECCTTSCHHH
T ss_pred HHHHHHHH-HCCC---eeeccCCHHHcCCeEEEEECCCchhhhHHHH-HHHHHCCCEEecCCCccCeEEEEccCCCCHHH
Confidence 99999999 8751 2 221 11 11222 2233 233344 4455679999887 3 9998876 8999
Q ss_pred HHHHHHHHHHHHhh
Q 012628 444 CEYLADAIIDSYHN 457 (459)
Q Consensus 444 i~~~~~~l~~~~~~ 457 (459)
+++++++|+++.++
T Consensus 346 Id~l~~al~~~~~~ 359 (361)
T 3m5u_A 346 VKTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998876
No 230
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.72 E-value=7.1e-17 Score=168.89 Aligned_cols=173 Identities=12% Similarity=0.076 Sum_probs=120.9
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCe
Q 012628 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW 201 (459)
Q Consensus 122 Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v 201 (459)
..|..-..++++.+|++++.. ..+++ ++|++.++..+ +.+.+.|||+|+++.++|..+...+...|+++
T Consensus 191 ~~~~g~i~eaE~~lA~~fGa~-------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~p 259 (715)
T 3n75_A 191 LDHSGPHKEAEQYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTP 259 (715)
T ss_dssp TTTBTHHHHHHHHHHHHHTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred CCCcHHHHHHHHHHHHHhCCC-------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEE
Confidence 335555789999999997542 34555 77778898887 55567899999999999999999999999999
Q ss_pred eeeeeecCCCCCC---------CHHHHHHHHHcCCCC--cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 202 SEYRYYDPKTVGL---------DFEGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 202 ~~v~~~~~~~~~~---------d~e~l~~~i~~~~~~--~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
++++... +.+++ |++.+++++++.++. ++++++++| ||+|.++ ++++|+++|++++ +++|||
T Consensus 260 v~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~---dl~~I~ela~~~~--livDEA 332 (715)
T 3n75_A 260 IYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLY---NTDFIKKTLDVKS--IHFDSA 332 (715)
T ss_dssp EEECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEE---CHHHHHHHCCCSE--EEEECT
T ss_pred EEEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccC---CHHHHHHHhCcCc--EEEccc
Confidence 9998753 34553 899999999864321 226777888 9999995 5567777787653 799999
Q ss_pred CCCCC-CCCCCCChhHHHHHHhc---CCe-EEEEEcCCcCcccCCCC-cceEEE
Q 012628 271 YQGFA-SGSLDNDASSVRLFATR---GME-LLVAQSYSKNLGLYAER-IGAMNV 318 (459)
Q Consensus 271 y~~~~-~~~~~~~~~~~~~~~~~---~~~-~i~~~S~SK~~~~~G~R-iG~~~~ 318 (459)
|.... +++. ...... ... .+. ++++.|+||.++ |+. .|++.+
T Consensus 333 H~~~~~f~~~---~~~~~a-l~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v 380 (715)
T 3n75_A 333 WVPYTNFSPI---YEGKCG-MSGGRVEGKVIYETQSTHKLLA--AFSQASMIHV 380 (715)
T ss_dssp TCTTGGGSGG---GTTSST-TSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEE
T ss_pred cccccccCCc---cccccc-cccCcCCCEEEEEEeccccccc--CCCCeeEEEe
Confidence 87653 2210 000000 111 122 366999999975 442 466643
No 231
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.65 E-value=5.5e-15 Score=148.09 Aligned_cols=339 Identities=14% Similarity=0.058 Sum_probs=193.3
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC--CCCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeeccc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (459)
+...||+..|.-...-|+. +|.|.+++.+.++... ...+.+.....++.+.+++...... .+.+.+ +++
T Consensus 63 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~f--~~s 133 (456)
T 4atq_A 63 GNSFIDLGSGIAVTSVGAS--DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDH-----AKRTVL--FNS 133 (456)
T ss_dssp SCEEEESSHHHHTCTTCTT--CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS-----CEEEEE--ESS
T ss_pred CCEEEEccccHHHHhcCCC--CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCC-----CcEEEE--eCC
Confidence 3578898888543333443 7889999888775421 1223344455566777777643221 356778 899
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-hhCC-------------CCeeeeeeec----CCCCCCCHHHHHH
Q 012628 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDAR-------------VPWSEYRYYD----PKTVGLDFEGMIA 221 (459)
Q Consensus 160 gt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~G-------------~~v~~v~~~~----~~~~~~d~e~l~~ 221 (459)
|++|++.+.++.+......+|+...-+|.+..... ...+ -.+..+|... ......+.+.++.
T Consensus 134 GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 213 (456)
T 4atq_A 134 GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR 213 (456)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHH
Confidence 99999999998877767789999999997653221 1111 1233444321 1111123343333
Q ss_pred HHHc-----CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012628 222 DIKA-----APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (459)
Q Consensus 222 ~i~~-----~~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (459)
.+.. .++....+|+-..+...|.+ ++++-+++|.++|++||+++|.||+..+++-.+ ..+.... .+-.++
T Consensus 214 ~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG---~~~a~e~-~gv~PD 289 (456)
T 4atq_A 214 AITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG---EWFAVDH-EGVVPD 289 (456)
T ss_dssp HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGG-TTCCCS
T ss_pred HHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc---ccccccc-cCCCCc
Confidence 3321 12345666666666667755 567889999999999999999999988875322 2222211 233355
Q ss_pred EEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhh-ccccccCCchHHHHHHHHHh---CChhhHHHHHHHHHH
Q 012628 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL-ARPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEM 371 (459)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~~~~ 371 (459)
++ +++|.+| .|+.+|.+.+ .++ +.+.+... +.+++ +.+.++..++...| ++++
T Consensus 290 iv---t~gK~lg-gg~P~~av~~---~~~----i~~~~~~~~~~~Tf-~gnpla~aaala~L~~i~~~~----------- 346 (456)
T 4atq_A 290 II---TMAKGIA-GGLPLSAITG---RAD----LLDAVHPGGLGGTY-GGNPVACAAALAAIDTMEQHD----------- 346 (456)
T ss_dssp EE---EECGGGG-TTSSCEEEEE---EHH----HHTTSCTTSSCCSS-SSCHHHHHHHHHHHHHHHHTT-----------
T ss_pred hh---hhhhccc-CcCCceeeEe---cHH----HHhcccccCCCCCC-CCChHHHHhhHHHHHHHhhcc-----------
Confidence 54 6789998 8999999866 666 33333222 22333 33444444444333 2222
Q ss_pred HHHHHHHHHHHHHHHHh---hccCCC--CCcccccCCcceeeecCC--------C----HHHHHHHHhcccEEEcCCC--
Q 012628 372 MAGRIKNVRQKLFDSLS---AKDKSG--KDWSFILRQIGMFSFTGL--------N----KAQSDNMTNKWHVYMTKDG-- 432 (459)
Q Consensus 372 ~~~~~~~~~~~l~~~L~---~~~g~~--~~~~~~~~~~g~f~~~~l--------~----~~~~~~ll~~~gI~v~~gg-- 432 (459)
..++.++.-+++.+.|+ ++++.. +.+.-+.-. |+++-+.+ + ..+...+++ +||.+.++|
T Consensus 347 l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~~ 424 (456)
T 4atq_A 347 LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTY 424 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCCC
Confidence 23333344444444443 022100 001111222 22221111 1 234556666 599987654
Q ss_pred ----cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012628 433 ----RISLA-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 ----Ris~~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
||... ..+++++++++++|.++++..
T Consensus 425 ~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 425 GNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 55432 238999999999999999754
No 232
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.63 E-value=1e-13 Score=139.38 Aligned_cols=345 Identities=12% Similarity=0.069 Sum_probs=195.2
Q ss_pred CCCceeecccccCCCCCCccCcHHHHHHHHHHhhcCC-CCCCC--CCcccHHHHHHHHHHHhcCCCCccccCceEEeecc
Q 012628 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (459)
Q Consensus 82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~--~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (459)
+...||+..|..-...++. .|.|.+++.+.+++.. ...+. +..-..+|-+.+++..... -+.|.+ ++
T Consensus 66 G~~ylD~~~g~~~~~lGh~--~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~------~~~v~f--~~ 135 (473)
T 4e3q_A 66 GRRYLDANSGLWNMVAGFD--HKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD------SGRVFY--TN 135 (473)
T ss_dssp CCEEEETTTTTTTCTTCSC--CHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS------SCEEEE--ES
T ss_pred CCEEEEcccCHHHhhccCC--CHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCC------ccEEEE--eC
Confidence 3568898888653333443 7889999888776521 11111 1122234555555553211 367988 99
Q ss_pred cchhHHHHHHHHHHHh-----CC-CCEEEEcCCCCcchHH-HhhhCC-----------CCeeeeeeec----CCCCCC--
Q 012628 159 SGTGSLRLAAALIERY-----FP-GAKVLISSPTWGNHKN-IFNDAR-----------VPWSEYRYYD----PKTVGL-- 214 (459)
Q Consensus 159 ggt~a~~l~~~~~~~~-----~~-gd~Vlv~~p~y~~~~~-~~~~~G-----------~~v~~v~~~~----~~~~~~-- 214 (459)
+|++|++.+.++...+ .+ ..+|+...-+|.+... .+...| .....++... ......
T Consensus 136 sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 215 (473)
T 4e3q_A 136 SGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEE 215 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhh
Confidence 9999999998887654 13 3578888888875322 221111 1122222210 000000
Q ss_pred -----CHHHHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012628 215 -----DFEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287 (459)
Q Consensus 215 -----d~e~l~~~i~~~-~~~~~~ii~~~p~NPTG~~-~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~ 287 (459)
..+++++.+... ++....+|+...+...|.+ ++++-+++|.++|++||+++|.||+..+|+-.+ ..+...
T Consensus 216 ~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa~e 292 (473)
T 4e3q_A 216 QFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWGCV 292 (473)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhHHH
Confidence 123455555432 2345666666667777765 566789999999999999999999998886322 233332
Q ss_pred HHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeCChhHHHHHHHHHHhh----ccccccCCchHHHHHHHHHhCChhhH
Q 012628 288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL----ARPMYSNPPVHGARIVANVVGNPALF 362 (459)
Q Consensus 288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~~~~ 362 (459)
. .+-.++++ +++|.++ .| +.+|.+.+ .++..+.+....... ...++ +.+.++..++...|+ ..
T Consensus 293 ~-~gv~PDi~---t~~K~l~-gG~~Pl~av~~---~~~i~~~~~~~~~~~~~~~hg~T~-~Gnpla~Aaala~L~---~i 360 (473)
T 4e3q_A 293 T-YDFTPDAI---ISSKNLT-AGFFPMGAVIL---GPELSKRLETAIEAIEEFPHGFTA-SGHPVGCAIALKAID---VV 360 (473)
T ss_dssp H-TTCCCSEE---EECGGGG-TTSSCCEEEEE---CHHHHHHHHHHHHHHSCCCCCCTT-TTCHHHHHHHHHHHH---HH
T ss_pred h-cCCCCChH---Hhccccc-CCCCCcccccc---cHHHHHHhccccccccccccCCCC-CCCcchhhhhhhhhh---hh
Confidence 2 23445655 5799998 56 89999877 888666665443321 22333 334444444433332 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCcceeee--cC-------C------CHHHHHHHHhcccEE
Q 012628 363 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSF--TG-------L------NKAQSDNMTNKWHVY 427 (459)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~g~f~~--~~-------l------~~~~~~~ll~~~gI~ 427 (459)
++ +...++.++.-++|.+.|+ ++.-...+.-+...|-++.+ +. . ...+...+++ +||.
T Consensus 361 ---~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll 433 (473)
T 4e3q_A 361 ---MN--EGLAENVRRLAPRFEERLK-HIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTD-LGLI 433 (473)
T ss_dssp ---HH--SSHHHHHHHHHHHHHHHHH-HHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEE
T ss_pred ---cc--ccHHHHHHHHHHHHHHHHH-HHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHH-CCcE
Confidence 00 2334455556666666666 54210112212222222221 10 1 1234556666 5999
Q ss_pred EcCCC---cEEEc-cCChhhHHHHHHHHHHHHhhc
Q 012628 428 MTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 428 v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~~ 458 (459)
+.+.| ||+-. .++++++++++++|.++++++
T Consensus 434 ~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 434 CRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp CEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99887 54422 238999999999999888763
No 233
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.62 E-value=3.7e-14 Score=138.37 Aligned_cols=234 Identities=10% Similarity=-0.001 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCC---C-CEEEEcCCCCcchHHHhhhCCCCeeeee
Q 012628 130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP---G-AKVLISSPTWGNHKNIFNDARVPWSEYR 205 (459)
Q Consensus 130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~---g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~ 205 (459)
.|-+.++..+.+..|.+.. ...++ ++|+|+++..+ ++..+.+ | |+||++.-++......+..+|+++++++
T Consensus 116 ~ltn~l~ld~L~~~G~~~~-~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~ 190 (501)
T 3hl2_A 116 KITNSLVLDIIKLAGVHTV-ANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIE 190 (501)
T ss_dssp HHHHHHHHHHHHHTTCTTC-CEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCC-CcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEe
Confidence 4445444333333466422 23555 79999777766 4555553 4 9999999999999999999999999987
Q ss_pred ee-cCCCCCCCHHHHHHHHHcCCCCcE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh
Q 012628 206 YY-DPKTVGLDFEGMIADIKAAPGGSF-ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA 283 (459)
Q Consensus 206 ~~-~~~~~~~d~e~l~~~i~~~~~~~~-~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~ 283 (459)
.. +++..++|++.++++|++.+...+ +++.+.++|-.|.+ +++++|+++|++||+++++|+||...... ..
T Consensus 191 p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~----~~ 263 (501)
T 3hl2_A 191 NVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSK----CM 263 (501)
T ss_dssp EEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHH----HH
T ss_pred eeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhh----hh
Confidence 52 234678999999999987542344 44444556655566 89999999999999999999998765411 00
Q ss_pred hHHHHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHH
Q 012628 284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD 363 (459)
Q Consensus 284 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 363 (459)
.-.......+.-++++.|.+|.+-.+ +|..++...+++.++++ .....+..+..|.+...++...+.
T Consensus 264 ~lp~sA~~~GrAD~vVqS~HK~llvp---IGG~ii~~~d~e~l~~~----~~~yPGr~S~Spsldl~~tLL~lG------ 330 (501)
T 3hl2_A 264 HLIQQGARVGRIDAFVQSLDKNFMVP---VGGAIIAGFNDSFIQEI----SKMYPGRASASPSLDVLITLLSLG------ 330 (501)
T ss_dssp HHHHHHHHHSCCCEEEEEHHHHHCCC---SSCEEEEESCHHHHHHH----HHTSCSCBCSHHHHHHHHHHHHHH------
T ss_pred hhHHHHHhcCCCcEEEecccccceee---cCceEEEeCCHHHHHHH----HHhCCCCCCCcHHHHHHHHHHHHH------
Confidence 01112223333567889999998655 33322235677744443 222111122333332333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012628 364 EWKAEMEMMAGRIKNVRQKLFDSLSAKD 391 (459)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 391 (459)
++.++++.++..++.++|.+.|+ ++
T Consensus 331 --r~Gy~~ll~e~~ela~~L~~~L~-~l 355 (501)
T 3hl2_A 331 --SNGYKKLLKERKEMFSYLSNQIK-KL 355 (501)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34456666666667777777776 54
No 234
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.54 E-value=6.6e-14 Score=150.01 Aligned_cols=343 Identities=10% Similarity=0.094 Sum_probs=186.2
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcC-CC--CCCCCCcccHHHHHHHHHHHhcCCCCccccCceEEeecccc
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~--~~Y~~~~g~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (459)
..+|+..|..-..-|+.. .|+|.+|+.+.+++- +. ..+ ...-..+|-+.+++...... -+.+++ +++|
T Consensus 381 ~ylD~~sg~~~~~lGh~~-~p~i~~Ai~~Q~~~l~h~~~~~~-~~~~~~~Lae~L~~~~p~~~-----l~~vff--~~SG 451 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTF-QAELAREMGYTAARFGHVMFPEN-VYEPALKCAELLLDGVGKGW-----ASRVYF--SDNG 451 (831)
T ss_dssp EEEETTHHHHTCCCCHHH-HHHHHHHHHHHHHHHSSCCCTTE-ECHHHHHHHHHHHHTTTTTT-----CCEEEE--ESSH
T ss_pred heeeecccHhhcCCCCCC-CHHHHHHHHHHHhhccccccccc-CCHHHHHHHHHHHHhCCCCC-----CCEEEE--CCCh
Confidence 456777665423323321 688888888777541 10 011 11222344455544432110 257888 9999
Q ss_pred hhHHHHHHHHH-HHh--CCC------------CEEEEcCCCCcch-HHHhhhCCCCe-----------------------
Q 012628 161 TGSLRLAAALI-ERY--FPG------------AKVLISSPTWGNH-KNIFNDARVPW----------------------- 201 (459)
Q Consensus 161 t~a~~l~~~~~-~~~--~~g------------d~Vlv~~p~y~~~-~~~~~~~G~~v----------------------- 201 (459)
++|++.+.++. +.+ ..| .+||...-+|.+- ...+...|...
T Consensus 452 SeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~ 531 (831)
T 4a0g_A 452 STAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVF 531 (831)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEE
T ss_pred hHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccc
Confidence 99999998886 322 122 3788888888643 23333333110
Q ss_pred -----eeeeeecCCCCC---------CC------------------HHHHHHHHHc-----CCCCcEEEEeCCC-CCCCC
Q 012628 202 -----SEYRYYDPKTVG---------LD------------------FEGMIADIKA-----APGGSFILLHGCA-HNPTG 243 (459)
Q Consensus 202 -----~~v~~~~~~~~~---------~d------------------~e~l~~~i~~-----~~~~~~~ii~~~p-~NPTG 243 (459)
..++. +..+. -| .+.+++.+++ .++...++|+-.. ++..|
T Consensus 532 ~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG 609 (831)
T 4a0g_A 532 LSNGSWNISL--PESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGG 609 (831)
T ss_dssp EETTEEEEEC--CTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTT
T ss_pred ccCCceEecC--CccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCC
Confidence 01111 10000 01 2456666652 1345666666664 78888
Q ss_pred CCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcCcccCC-CCcceEEEEeC
Q 012628 244 IDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCS 321 (459)
Q Consensus 244 ~~~-s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~ 321 (459)
..+ +++.+++|.++|++||+++|+||++.+++..+ ..+.... .+..++++ +|+|.++ .| +++|++++
T Consensus 610 ~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG---~~fa~e~-~gv~PDii---tlsK~L~-gG~~Plgav~~--- 678 (831)
T 4a0g_A 610 MHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG---VETTTEL-LGCKPDIA---CFAKLLT-GGMVPLAVTLA--- 678 (831)
T ss_dssp SEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS---BSSTHHH-HSSCCSEE---EECGGGG-TTSSCCEEEEE---
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC---CchhhHh-cCCCCcEE---EEecccc-cCccCcEEEEE---
Confidence 764 78889999999999999999999999886543 2223222 23334544 7999998 57 79999977
Q ss_pred ChhHHHHHHHHHH--hh-ccccccCCchHHHHHHHHH---hCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCC
Q 012628 322 SSDLAARVKSQLK--RL-ARPMYSNPPVHGARIVANV---VGNPALFDEWKAEMEMMAGRIKN-VRQKLFDSLSAKDKSG 394 (459)
Q Consensus 322 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~g~~ 394 (459)
+++..+.+..... .. ...++ +.+.+++.++... ++++++. +.+.+..+++++ .++.+.+.+. +.+.
T Consensus 679 ~~~i~~~~~~~~~~~~~~hg~T~-~g~Pla~Aaala~L~~i~~~~l~----~~~~~~~~~l~~~l~~~l~~~l~-~~~~- 751 (831)
T 4a0g_A 679 TDAVFDSFSGDSKLKALLHGHSY-SAHAMGCATAAKAIQWFKDPETN----HNITSQGKTLRELWDEELVQQIS-SHSA- 751 (831)
T ss_dssp CHHHHHTTCSSCGGGSCCCCCTT-TTCHHHHHHHHHHHHHHHCTTTC----TTBCTTSSBBCCCSCHHHHHHHH-HSTT-
T ss_pred CHHHHHHHhcccccccceeecCC-cccHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHh-hCCC-
Confidence 8774433322100 01 12223 3444554444333 3232221 111111111111 1223444555 5431
Q ss_pred CCcccccCCcceeeecCC-------------CHHHHHHHHhcccEEEcCCC---cEEEc-cCChhhHHHHHHHHHHHHhh
Q 012628 395 KDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHN 457 (459)
Q Consensus 395 ~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg---Ris~~-~~~~e~i~~~~~~l~~~~~~ 457 (459)
+..+...|.++ .+.+ ..++...+++ +||.+.|.| ||+.. ..++++|++++++|.+++++
T Consensus 752 --v~~vrg~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~ 827 (831)
T 4a0g_A 752 --VQRVVVIGTLF-ALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGE 827 (831)
T ss_dssp --EEEEEEETTEE-EEEEC---------CHHHHHHHHHHHH-TTEECCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred --ceeEeecccEE-EEEEecCccccccchHHHHHHHHHHHH-CCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 23333333333 2221 1134556665 699999987 66632 23999999999999999987
Q ss_pred cC
Q 012628 458 VS 459 (459)
Q Consensus 458 ~~ 459 (459)
+.
T Consensus 828 l~ 829 (831)
T 4a0g_A 828 FN 829 (831)
T ss_dssp TC
T ss_pred hc
Confidence 63
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.53 E-value=6.6e-13 Score=131.22 Aligned_cols=186 Identities=11% Similarity=-0.040 Sum_probs=121.1
Q ss_pred cHHHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHhhhCCCCeee
Q 012628 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF----PGAKVLISSPTWGNHKNIFNDARVPWSE 203 (459)
Q Consensus 128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~----~gd~Vlv~~p~y~~~~~~~~~~G~~v~~ 203 (459)
...+.+.+..++....|.+- ....++ ++|+|++..++ ++..++ +++.|+++.-++......+..+|++++.
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~-~~~~~l--V~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHS-VASCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTT-CCEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCC-CceEEE--ECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence 33455555555544334421 122355 78888555554 333333 3899999999999999999999999888
Q ss_pred eeee-cCCCCCCCHHHHHHHHHcCC-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC
Q 012628 204 YRYY-DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN 281 (459)
Q Consensus 204 v~~~-~~~~~~~d~e~l~~~i~~~~-~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~ 281 (459)
++.. +++.+.+|++.++++|++.+ +.+.+++.+..+|.+|.+ +++++|+++|++||+++++|+||......
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~---- 243 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSK---- 243 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH----
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchhhhh----
Confidence 7642 23467899999999998744 234445544456667788 89999999999999999999998865311
Q ss_pred ChhHH-HHHHhcCCeEEEEEcCCcCcccCCCCcceEEEEeCChhHHHHH
Q 012628 282 DASSV-RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV 329 (459)
Q Consensus 282 ~~~~~-~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~ 329 (459)
...+ ........-+.++.|.+|.+..+ ...+++ ...+++..+.+
T Consensus 244 -~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l--~~rd~~~~~~~ 288 (450)
T 3bc8_A 244 -CMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAII--AGFNEPFIQDI 288 (450)
T ss_dssp -HHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEE--EESCHHHHHHH
T ss_pred -hHhHHHHHhcccCCCEEEECCccCCCch-hccEEE--EecCHHHHHHH
Confidence 1111 11122123456778999998644 223443 44676654443
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.53 E-value=1.7e-12 Score=126.12 Aligned_cols=329 Identities=14% Similarity=0.154 Sum_probs=189.0
Q ss_pred CceeecccccCCCCCCccCcHHHHHHHHHHhhcCCCCCCCC------CcccHHHHHHHHHHHhcCCCCccccCce-EEee
Q 012628 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------IEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQ 156 (459)
Q Consensus 84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~------~~g~~~lr~aia~~l~~~~~~~~~~~~i-~~~~ 156 (459)
.-|+|-..++ .+++.|++++...+.+....+|+- .+-++++.....+.....++.. .... +=+|
T Consensus 55 ~~ieLIASEN-------~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~--~A~w~VNVQ 125 (490)
T 3ou5_A 55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD--PAQWGVNVQ 125 (490)
T ss_dssp HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCC--TTTEEEECC
T ss_pred cCceEecCCC-------cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCC--ccccCCCCC
Confidence 5678876654 238999999988886544444421 2222333322222222222222 2211 1245
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------hhhCC--CCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDAR--VPWSEYRYYDPKTVGLDFEGMIADIKAA 226 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~--------~~~~G--~~v~~v~~~~~~~~~~d~e~l~~~i~~~ 226 (459)
..+|+.|+..+ +.+.+.|||+|+..+....+|..- +...| .+.+.++++ ++++.+|.|++++...+.
T Consensus 126 P~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd-~~t~~IDyd~~~~~A~~~ 202 (490)
T 3ou5_A 126 PYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTARLF 202 (490)
T ss_dssp CSSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCEE-TTTTEECHHHHHHHHHHH
T ss_pred cCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccC-CCCCcccHHHHHHHHhhc
Confidence 68889999888 677789999999999877665321 11122 356667775 457889999999988874
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEEcCCcC
Q 012628 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (459)
Q Consensus 227 ~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (459)
++++|+...-.+|- . -+++++.++|.+.|.++++|.++. ++.-++.-.++ + . ...++..|.+|+
T Consensus 203 --kPklIi~G~SaY~r--~---id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP--~----~--~ADvVTtTTHKT 267 (490)
T 3ou5_A 203 --RPRLIIAGTSAYAR--L---IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP--F----K--HADIVTTTTHKT 267 (490)
T ss_dssp --CCSEEEECCSSCCS--C---CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--G----G--TCSEEEEESSST
T ss_pred --CCCeEEECCccCcc--c---cCHHHHHHHHhhcccEEEechhhhhhhhcccccCCc--c----c--cceEEecccccc
Confidence 55677765555553 2 347778888889999999999963 23322221111 1 1 146788899999
Q ss_pred cccCCCCcceEEEEeCCh--------------hHHHHHHHHHHhhccccccCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012628 306 LGLYAERIGAMNVVCSSS--------------DLAARVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 371 (459)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 371 (459)
+ .|-|=|.+. +... ++.+++.+..-. +..++|-.. ..++..+ .+.+.+..+.+.
T Consensus 268 L--rGPrGG~Il--~~~~~~~~~~k~~~~~~~~~~kkin~aVFP---g~qggp~~h-~IAAkAV----af~Ea~~p~fk~ 335 (490)
T 3ou5_A 268 L--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDRINFAVFP---SLQGGPHNH-AIAAVAV----ALKQACTPMFRE 335 (490)
T ss_dssp T--CSCSCEEEE--EECSEEEECC--CCEEECCCHHHHHHHHTT---TTCSSCCHH-HHHHHHH----HHHHHHSHHHHH
T ss_pred c--cCCCceEEE--eccccccccccccchhHHHHHHHHHhhcCc---cccccchHH-HHHHHHH----HHHHHHhHhHHH
Confidence 7 577777773 4432 333444433222 112233222 2222111 222222344567
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccccC--Ccceeee----cCCCHHHHHHHHhcccEEEc----CC--------C-
Q 012628 372 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSF----TGLNKAQSDNMTNKWHVYMT----KD--------G- 432 (459)
Q Consensus 372 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~g~f~~----~~l~~~~~~~ll~~~gI~v~----~g--------g- 432 (459)
+.++..++.+.|.+.|. +.| ++++.. +...+++ .+++...++.+|++.||.+. |+ |
T Consensus 336 Ya~qVv~NAkaLA~~L~-~~G----~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGi 410 (490)
T 3ou5_A 336 YSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGL 410 (490)
T ss_dssp HHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEE
T ss_pred HHHHHHHHHHHHHHHHH-hCC----CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCee
Confidence 78888888999999999 887 465532 1122222 15578889999999999774 32 3
Q ss_pred cEEEc-----cCChhhHHHHHHHHHHHHh
Q 012628 433 RISLA-----GLSLAKCEYLADAIIDSYH 456 (459)
Q Consensus 433 Ris~~-----~~~~e~i~~~~~~l~~~~~ 456 (459)
||.-. ++.+++++++.+.|.+++.
T Consensus 411 RiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 411 RLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 88632 3578999999999988764
No 237
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=84.70 E-value=4.8 Score=40.27 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=69.2
Q ss_pred CCCccccCceEEeecccch-hHHHHHHHHHHHhCCC----------C-----EEEEcCCCCc------------------
Q 012628 143 DNSVLKEQRVATVQGLSGT-GSLRLAAALIERYFPG----------A-----KVLISSPTWG------------------ 188 (459)
Q Consensus 143 ~~~~~~~~~i~~~~t~ggt-~a~~l~~~~~~~~~~g----------d-----~Vlv~~p~y~------------------ 188 (459)
|.+.++++.|.+ +.... |+++-+..+..++..+ . ..|...|.|.
T Consensus 124 Y~L~v~~~~i~I--~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~i 201 (525)
T 3gh5_A 124 YDLITTSNQVTL--TANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEV 201 (525)
T ss_dssp EEEEECSSEEEE--EESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHH
T ss_pred eEEEEeCCEEEE--EECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHHH
Confidence 445677777777 55554 4444444444444321 1 2455557764
Q ss_pred -chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012628 189 -NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (459)
Q Consensus 189 -~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~ 267 (459)
.+...+..++..+..+-+.++.+|++..+..-+.-.. ...+ ....+.|-.+|++++++|++.|+++||-||-
T Consensus 202 k~~id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~-Ga~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP 274 (525)
T 3gh5_A 202 KRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEI-GSKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP 274 (525)
T ss_dssp HHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT-TTSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHcCCcEEEEEeccCCccccccccchhhhhc-cCcc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 2233344567777777776666777776655443322 1110 1122346789999999999999999998873
No 238
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=81.31 E-value=7.7 Score=38.75 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=42.8
Q ss_pred hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012628 194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (459)
Q Consensus 194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~ 267 (459)
+..++..+..+-+.++.+|.+..+..-+.-.. ...+ ......|-.+|++++++|++.|+++||-||-
T Consensus 183 ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~-ga~~------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 183 VARYKYNKLHLHLSDDQGWRIAIDSWPRLATY-GGST------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp HHTTTCCEEEEECBCSSCBCBCCTTSTHHHHT-TTSC------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCcEEEEEeccCCCceehhhhhHHHHhh-cCcc------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 33456666666665555677765554443222 1010 1122337889999999999999999998883
No 239
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=76.06 E-value=6.5 Score=39.22 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=41.1
Q ss_pred hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE--Eecc
Q 012628 194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF--FDVA 270 (459)
Q Consensus 194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii--~Dea 270 (459)
+..++..+..+.+.++.+|.+..+.+.+.-.. .. ..| |..+|++++++|++.|+++|+-|| +|-.
T Consensus 177 ma~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~---Ga--------~~~-~~~YT~~di~eiv~yA~~rgI~VIPEID~P 243 (507)
T 1now_A 177 MAFNKFNVLHWHIVDDQSFPYQSITFPELSNK---GS--------YSL-SHVYTPNDVRMVIEYARLRGIRVLPEFDTP 243 (507)
T ss_dssp HHHTTCCEEEEECCCSSCCCBCCSSCHHHHHH---HS--------SST-TSCBCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred HHHhCCcEEEEeeccCccceeeccchhhhhcc---cC--------cCC-CCCCCHHHHHHHHHHHHHcCCEEEEccCCc
Confidence 33556666666665555566654443332211 00 012 678999999999999999999888 4543
No 240
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=74.77 E-value=7.6 Score=38.72 Aligned_cols=63 Identities=8% Similarity=0.048 Sum_probs=40.3
Q ss_pred hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012628 194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (459)
Q Consensus 194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~ 267 (459)
+..++..+..+.+.++.+|.+..+.+.+.-.. . ...|.|..+|++++++|++.|+++||-||-
T Consensus 171 mA~~KlN~lh~HltDdq~wr~ei~~~P~Lt~~---G--------a~~~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 171 MAYNKLNVFHWHLVDDPSFPYESFTFPELMRK---G--------SYNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp HHHTTCCEEEEECCCSSCCCBCCSSCTHHHHH---H--------SSCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCceEEEEEecccCeeeeccccchhhhc---c--------ccCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 33556666666665555666654433222111 0 012446789999999999999999998883
No 241
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=74.04 E-value=11 Score=34.28 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=58.6
Q ss_pred CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012628 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A 226 (459)
Q Consensus 150 ~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~ 226 (459)
..+++ ..|++.++-.+. .......|-+|++.+-.-.......+..|.+...+..+- -|.+++++.++. .
T Consensus 29 gKval--VTGas~GIG~ai-A~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 29 AKIAV--ITGATSGIGLAA-AKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADS-----ANLAELDRLYEKVKAE 100 (273)
T ss_dssp TCEEE--EESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHH
T ss_pred CCEEE--EeCcCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecC-----CCHHHHHHHHHHHHHH
Confidence 34555 567777777652 222345888888876544445555666788888777631 245555544433 1
Q ss_pred CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012628 227 PGGSFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (459)
Q Consensus 227 ~~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l~ 258 (459)
-.+.-+++.+..-++.+. -++.++|+++.++-
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 123445554444444443 36788999988763
No 242
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=66.42 E-value=11 Score=37.89 Aligned_cols=75 Identities=8% Similarity=0.040 Sum_probs=46.4
Q ss_pred HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC--CCcEEE-EeC--CCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 192 NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP--GGSFIL-LHG--CAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 192 ~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~--~~~~~i-i~~--~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
..+..++..+..+.+.++.+|.+..+.+-+.-.... ..+.+= .-+ .-..|.|-.+|++++++|++.|+++||-||
T Consensus 162 D~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~~~~g~YT~~di~eIv~YA~~rgI~VI 241 (543)
T 3rcn_A 162 EVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVI 241 (543)
T ss_dssp HHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCCCEECCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCCccCCCcCHHHHHHHHHHHHHcCCEEe
Confidence 334456777777777667777777665554332100 001000 000 013345788999999999999999999888
No 243
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=61.67 E-value=45 Score=28.68 Aligned_cols=95 Identities=8% Similarity=-0.019 Sum_probs=53.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
..||++++-... .......|.+|++..-.-.......+..+.++..+..+ --|.+.+++.++......-+++.+
T Consensus 6 VTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 6 ITGASSGLGAEL-AKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARD-----LASHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECC-----TTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred EecCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeec-----CCCHHHHHHHHHHHhhcCCEEEEe
Confidence 366667766641 12224478888887655444455555556666666652 136788888877632222355544
Q ss_pred CCCCCCCC--CCCHHHHHHHHHH
Q 012628 237 CAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 237 ~p~NPTG~--~~s~~~l~~i~~l 257 (459)
....+.+. ..+.+++++..++
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~ 102 (230)
T 3guy_A 80 AGSGYFGLLQEQDPEQIQTLIEN 102 (230)
T ss_dssp CCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCcCCCCccccCCHHHHHHHHHH
Confidence 43333332 3567777777654
No 244
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=60.66 E-value=84 Score=27.27 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=50.9
Q ss_pred cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012628 147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA 225 (459)
Q Consensus 147 ~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~ 225 (459)
+....|++ ..||.-|...+. .++..|-.|.+.+|.... .....+..+++++.-+ ++.+.+ .
T Consensus 29 L~gk~VLV--VGgG~va~~ka~---~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~--------~~~~dL----~- 90 (223)
T 3dfz_A 29 LKGRSVLV--VGGGTIATRRIK---GFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKK--------VGEEDL----L- 90 (223)
T ss_dssp CTTCCEEE--ECCSHHHHHHHH---HHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSC--------CCGGGS----S-
T ss_pred cCCCEEEE--ECCCHHHHHHHH---HHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECC--------CCHhHh----C-
Confidence 33567887 677777776652 235567788888887643 2333333233322111 222322 1
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE-Eecc-CCCCC
Q 012628 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF-FDVA-YQGFA 275 (459)
Q Consensus 226 ~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii-~Dea-y~~~~ 275 (459)
...+++ .++++| +.-..|++.|+ .++++- +|+. +..|.
T Consensus 91 ---~adLVI-aAT~d~-------~~N~~I~~~ak-~gi~VNvvD~p~~~~f~ 130 (223)
T 3dfz_A 91 ---NVFFIV-VATNDQ-------AVNKFVKQHIK-NDQLVNMASSFSDGNIQ 130 (223)
T ss_dssp ---SCSEEE-ECCCCT-------HHHHHHHHHSC-TTCEEEC-----CCSEE
T ss_pred ---CCCEEE-ECCCCH-------HHHHHHHHHHh-CCCEEEEeCCcccCeEE
Confidence 222444 344554 66677888887 777654 4553 34444
No 245
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=60.23 E-value=24 Score=37.52 Aligned_cols=119 Identities=8% Similarity=-0.006 Sum_probs=67.2
Q ss_pred CCCccccCceEEeecccc-hhHHHHHHHHHHHhCCCC------EEEEcCCCCc-------------------chHHHhhh
Q 012628 143 DNSVLKEQRVATVQGLSG-TGSLRLAAALIERYFPGA------KVLISSPTWG-------------------NHKNIFND 196 (459)
Q Consensus 143 ~~~~~~~~~i~~~~t~gg-t~a~~l~~~~~~~~~~gd------~Vlv~~p~y~-------------------~~~~~~~~ 196 (459)
|.+.++++.|.+ +... .|+++-+..+..++..++ ..|...|.|. .+...+..
T Consensus 262 Y~L~v~~~~i~I--~a~~~~G~fyglqTL~QLl~~~~~~~ip~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~Id~mA~ 339 (858)
T 1c7s_A 262 YELKIGKKEAQV--IGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAA 339 (858)
T ss_dssp EEEEECSSCEEE--EESSHHHHHHHHHHHHHHSCTTSCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCeEEE--EEecccceeHHHHHHHHHhhhcCCccccceEEEeCCCcceeeeeecCCCCCCCHHHHHHHHHHHHH
Confidence 334566777776 5544 444444444444444332 2344457664 22333445
Q ss_pred CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE--------EEeCC-CCC--CCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 197 ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI--------LLHGC-AHN--PTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 197 ~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~--------ii~~~-p~N--PTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
++..+..+.+.++.+|++..+.+-+.-+. ...- .+.+. .++ |.|-.+|++++++|++.|+++||-|
T Consensus 340 ~KlN~lh~HltDdqgwriei~~yP~Lt~~---Ga~r~~~~~~~~~~~p~~g~~~~~~~g~YT~~direIv~YA~~rgI~V 416 (858)
T 1c7s_A 340 YKLNKFHFHLSDDEGWRIEIPGLPELTEV---GGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEV 416 (858)
T ss_dssp TTCCEEEEECEETTEECBCCTTCTHHHHT---TTEECSCTTCSSSBCCCTTCCSSCEECCBCHHHHHHHHHHHHTTTCEE
T ss_pred hCCcEEEEEeccCccccccccCCchhhhc---cccccccccccccccccccCCCCccCCCCCHHHHHHHHHHHHHcCCEE
Confidence 67777777766666777776655443221 0000 00000 011 3467899999999999999999988
Q ss_pred E
Q 012628 266 F 266 (459)
Q Consensus 266 i 266 (459)
|
T Consensus 417 I 417 (858)
T 1c7s_A 417 I 417 (858)
T ss_dssp E
T ss_pred E
Confidence 8
No 246
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=59.23 E-value=23 Score=31.15 Aligned_cols=95 Identities=20% Similarity=0.109 Sum_probs=51.9
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..|+++++-... .......|.+|++.+-.-.......+..|.++..+..+ --|.+.+++.++. ...+.-++
T Consensus 11 VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~l 84 (247)
T 3rwb_A 11 VTGAAQGIGKAI-AARLAADGATVIVSDINAEGAKAAAASIGKKARAIAAD-----ISDPGSVKALFAEIQALTGGIDIL 84 (247)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCC-----TTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcC-----CCCHHHHHHHHHHHHHHCCCCCEE
Confidence 467777776641 12224478888887655444444555557677666653 1255666555542 11123355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+....+.+. ..+.++|+++.++
T Consensus 85 v~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 85 VNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 54444334332 3567888877765
No 247
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=59.07 E-value=55 Score=29.12 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=54.7
Q ss_pred ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHH---
Q 012628 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK--- 224 (459)
Q Consensus 151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~--- 224 (459)
.+++ ..|++.++-.+. .......|.+|++.+-.-.... ..++..|.++..+..+- -|.+++++.++
T Consensus 10 Kval--VTGas~GIG~ai-a~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 10 KTAL--VTGSARGLGFAY-AEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDV-----TDELAIEAAFSKLD 81 (255)
T ss_dssp CEEE--ETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCT-----TCHHHHHHHHHHHH
T ss_pred CEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeC-----CCHHHHHHHHHHHH
Confidence 3544 467777776652 2223458999998764432222 23345677877776631 24455544443
Q ss_pred cCCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 225 AAPGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 225 ~~~~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+...+.-+++.|..-++.+. -++.++|+++.++
T Consensus 82 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 82 AEGIHVDILINNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp HTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 32223345554444444443 3678899998876
No 248
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=56.51 E-value=67 Score=24.81 Aligned_cols=99 Identities=8% Similarity=0.015 Sum_probs=57.9
Q ss_pred cchhHHHHHHHHHHHhC---CCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe
Q 012628 159 SGTGSLRLAAALIERYF---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (459)
Q Consensus 159 ggt~a~~l~~~~~~~~~---~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~ 235 (459)
.+.+.+.+..-+++.+. .+..|+...|.+..|...+...|.....+=.-...+..--+..+|++++. +..-.++
T Consensus 12 ~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs---g~~~aVl 88 (119)
T 1ofu_X 12 LPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL---GRSHTVV 88 (119)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH---TCEEEEE
T ss_pred CCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc---CCccEEE
Confidence 34444555444555554 45667777777888999999899754433322121111235777888887 4443333
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 236 ~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.-+. -++..+.+++--.|++-+.+.
T Consensus 89 ~wl~-----~l~~~~~RRLqlAA~~g~~~~ 113 (119)
T 1ofu_X 89 SWLE-----PLSRAARKQLSRAAQLGQAQS 113 (119)
T ss_dssp ECCS-----SCCHHHHHHHHHHHHHHTCEE
T ss_pred ECCC-----cCChHHHHHHHHHHHhCCCeE
Confidence 3322 266788888877777655543
No 249
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=52.70 E-value=33 Score=30.25 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=43.0
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..|+++++-... .......|.+|++..-.-.......+..+.++..+..+ --|.+.+++.++. ...+.-++
T Consensus 12 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~l 85 (257)
T 3tpc_A 12 VTGASSGLGAAV-TRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNAD-----VTNEADATAALAFAKQEFGHVHGL 85 (257)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEESSCC------------CEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EeCCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEE
Confidence 467777776641 12234478888876644434444444456666666552 1255665555542 11123355
Q ss_pred EeCCCCCCCCC------CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI------DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~------~~s~~~l~~i~~l 257 (459)
+.+....+.+. ..+.++|++..++
T Consensus 86 v~nAg~~~~~~~~~~~~~~~~~~~~~~~~v 115 (257)
T 3tpc_A 86 VNCAGTAPGEKILGRSGPHALDSFARTVAV 115 (257)
T ss_dssp EECCCCCCCCCSEETTEECCHHHHHHHHHH
T ss_pred EECCCCCCCCccccccccCCHHHHHHHHHH
Confidence 54433333222 2556778777654
No 250
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=51.92 E-value=45 Score=30.00 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=49.8
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
..||++++-... .......|.+|++..-.-.......+..+.++..+..+ --|.+.+++.++.. .+.-+++++
T Consensus 21 VTGas~gIG~~~-a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----l~d~~~v~~~~~~~-~~iD~lv~n 93 (291)
T 3rd5_A 21 ITGANSGLGAVT-ARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELD-----LQDLSSVRRFADGV-SGADVLINN 93 (291)
T ss_dssp EECCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECC-----TTCHHHHHHHHHTC-CCEEEEEEC
T ss_pred EeCCCChHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcC-----CCCHHHHHHHHHhc-CCCCEEEEC
Confidence 467777776651 12234478888887654444455555566666666653 13778888888764 233455543
Q ss_pred CCCCCCCCCCCHHHHHHHHH
Q 012628 237 CAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~ 256 (459)
..........+.+++++..+
T Consensus 94 Ag~~~~~~~~~~~~~~~~~~ 113 (291)
T 3rd5_A 94 AGIMAVPYALTVDGFESQIG 113 (291)
T ss_dssp CCCCSCCCCBCTTSCBHHHH
T ss_pred CcCCCCcccCCHHHHHHHHH
Confidence 32222222234444444443
No 251
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=50.54 E-value=40 Score=30.17 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=51.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~i 233 (459)
..|+++++-... .......|.+|++.+-.-.......+..+.++..+..+- -|.+.+++.++.. ..+.-++
T Consensus 32 VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~l 105 (277)
T 4dqx_A 32 VTGGGSGIGRAT-AELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDV-----SSAKDAESMVEKTTAKWGRVDVL 105 (277)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEE
Confidence 467777776651 122244788888876543344444455566777776631 2556665555431 0123355
Q ss_pred EeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
+.+....+.+ ...+.++|+++.++
T Consensus 106 v~nAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 4dqx_A 106 VNNAGFGTTGNVVTIPEETWDRIMSV 131 (277)
T ss_dssp EECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHH
Confidence 5444333333 23667888877664
No 252
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=50.44 E-value=1.8e+02 Score=28.12 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=52.7
Q ss_pred cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh-hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012628 149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227 (459)
Q Consensus 149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~ 227 (459)
...|++ ..||..+...+-.+ +..|..|.+.+|....-...+ +..+++++.= .++.+.+ .
T Consensus 12 ~~~vlV--vGgG~va~~k~~~L---~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~--------~~~~~~l----~--- 71 (457)
T 1pjq_A 12 DRDCLI--VGGGDVAERKARLL---LEAGARLTVNALTFIPQFTVWANEGMLTLVEG--------PFDETLL----D--- 71 (457)
T ss_dssp TCEEEE--ECCSHHHHHHHHHH---HHTTBEEEEEESSCCHHHHHHHTTTSCEEEES--------SCCGGGG----T---
T ss_pred CCEEEE--ECCCHHHHHHHHHH---HhCcCEEEEEcCCCCHHHHHHHhcCCEEEEEC--------CCCcccc----C---
Confidence 466777 78888887776322 456888888888654322222 2222222211 1222322 1
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-EEecc
Q 012628 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP-FFDVA 270 (459)
Q Consensus 228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i-i~Dea 270 (459)
...+++ .++++| +.-..+++.|+++|+++ ++|+.
T Consensus 72 -~~~lVi-~at~~~-------~~n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 72 -SCWLAI-AATDDD-------TVNQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp -TCSEEE-ECCSCH-------HHHHHHHHHHHHTTCEEEETTCT
T ss_pred -CccEEE-EcCCCH-------HHHHHHHHHHHHcCCEEEECCCc
Confidence 222343 355555 55677999999999987 56665
No 253
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=48.78 E-value=39 Score=30.28 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=50.0
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..||++++-... .......|.+|++.+-.-.......+..|.++..+..+- -|.+.+++.++. .-.+.-++
T Consensus 34 VTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~l 107 (277)
T 3gvc_A 34 VTGAGAGIGLAV-ARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDV-----SDEQQIIAMVDACVAAFGGVDKL 107 (277)
T ss_dssp ETTTTSTHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCT-----TCHHHHHHHHHHHHHHHSSCCEE
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecC-----CCHHHHHHHHHHHHHHcCCCCEE
Confidence 466666665541 122344788888876544444444455566777766531 255655555442 11123355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+....+.+. ..+.++++++.++
T Consensus 108 vnnAg~~~~~~~~~~~~~~~~~~~~v 133 (277)
T 3gvc_A 108 VANAGVVHLASLIDTTVEDFDRVIAI 133 (277)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHH
Confidence 54443333222 3577888877664
No 254
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=48.73 E-value=1.3e+02 Score=25.98 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=16.2
Q ss_pred CCCCC--CCCCCHHHHHHHH---HHHHhc--CCeeEEec
Q 012628 238 AHNPT--GIDPTPEQWEKIA---DVIQEK--NHIPFFDV 269 (459)
Q Consensus 238 p~NPT--G~~~s~~~l~~i~---~l~~~~--~~~ii~De 269 (459)
+-||+ |..+.+.-+++|. ++..++ ++.+.+|.
T Consensus 142 sv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 142 SVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp SSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred EeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 34666 6655544444444 444332 67788774
No 255
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=48.58 E-value=77 Score=28.14 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=50.1
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc--CCCCcEEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA--APGGSFILL 234 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~--~~~~~~~ii 234 (459)
..||++++-... .......|.+|++.+-.-.......+..+.++..+..+- -|.+.+++.++. ...+..+++
T Consensus 35 VTGas~GIG~ai-a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl-----~~~~~v~~~~~~~~~~~~id~lv 108 (281)
T 3ppi_A 35 VSGGAGGLGEAT-VRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNV-----TSEDSVLAAIEAANQLGRLRYAV 108 (281)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHTTSSEEEEEE
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCC-----CCHHHHHHHHHHHHHhCCCCeEE
Confidence 467777776541 122244788888876544444455555566777776631 255666555543 111233444
Q ss_pred eC-CCCCCCC-------CCCCHHHHHHHHHH
Q 012628 235 HG-CAHNPTG-------IDPTPEQWEKIADV 257 (459)
Q Consensus 235 ~~-~p~NPTG-------~~~s~~~l~~i~~l 257 (459)
++ ....+.+ ...+.+++++..++
T Consensus 109 ~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
T 3ppi_A 109 VAHGGFGVAQRIVQRDGSPADMGGFTKTIDL 139 (281)
T ss_dssp ECCCCCCCCCCSBCTTSCBCCHHHHHHHHHH
T ss_pred EccCcccccccccccccccCCHHHHHHHHHH
Confidence 44 2222222 24666777777654
No 256
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=47.60 E-value=81 Score=27.59 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=49.3
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++.+-.-..... .++..|.++..+..+- -|.+.+++.++. . .+.
T Consensus 12 VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~-g~i 84 (252)
T 3h7a_A 12 VIGAGDYIGAEI-AKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDA-----RNEDEVTAFLNAADAH-APL 84 (252)
T ss_dssp EECCSSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCT-----TCHHHHHHHHHHHHHH-SCE
T ss_pred EECCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcC-----CCHHHHHHHHHHHHhh-CCc
Confidence 467777766641 12224478888877654333333 2334466777776631 245555554432 2 234
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+....+.+. ..+.+++++..++
T Consensus 85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (252)
T 3h7a_A 85 EVTIFNVGANVNFPILETTDRVFRKVWEM 113 (252)
T ss_dssp EEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred eEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 45554444333332 3567777777654
No 257
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=47.29 E-value=64 Score=28.64 Aligned_cols=99 Identities=8% Similarity=-0.015 Sum_probs=54.1
Q ss_pred ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc--
Q 012628 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA-- 225 (459)
Q Consensus 151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~-- 225 (459)
.+++ ..|++.++-.+. .......|.+|++.+-.-.... ..++..|.++..+..+- -|.+++++.++.
T Consensus 8 Kval--VTGas~GIG~ai-A~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv-----t~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 8 KVVI--VTGAGSGIGRAI-AKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADV-----SKKKDVEEFVRRTF 79 (254)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TSHHHHHHHHHHHH
T ss_pred CEEE--EeCCCCHHHHHH-HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHH
Confidence 3444 467777776652 1222347888888664432222 23445688888877631 245555554433
Q ss_pred -CCCCcEEEEeCCC-CCCCCC--CCCHHHHHHHHHH
Q 012628 226 -APGGSFILLHGCA-HNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 226 -~~~~~~~ii~~~p-~NPTG~--~~s~~~l~~i~~l 257 (459)
.-.+.-+++.|.. ..+.+. -++.++|+++.++
T Consensus 80 ~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~v 115 (254)
T 4fn4_A 80 ETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAV 115 (254)
T ss_dssp HHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHH
Confidence 1112335553332 233342 3788999999876
No 258
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=46.86 E-value=50 Score=29.38 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=51.7
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~i 233 (459)
..||++++-... .......|.+|++..-.-..........+.++..+..+ --|.+.+++.+++. ..+.-++
T Consensus 10 VTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~~~~~~~~~~~~~g~id~l 83 (281)
T 3m1a_A 10 VTGASSGFGRAI-AEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLD-----VTDGERIDVVAADVLARYGRVDVL 83 (281)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECC-----TTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEee-----CCCHHHHHHHHHHHHHhCCCCCEE
Confidence 467777776641 12234478888887765555566666666666666653 12556666555421 0122355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+++....+.+. ..+.++++++.++
T Consensus 84 v~~Ag~~~~~~~~~~~~~~~~~~~~~ 109 (281)
T 3m1a_A 84 VNNAGRTQVGAFEETTERELRDLFEL 109 (281)
T ss_dssp EECCCCEEECCTTTCCHHHHHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHH
Confidence 54443332222 4566777776654
No 259
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=46.83 E-value=42 Score=29.82 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=49.1
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..||++++-... .......|.+|++..-.-.......+..|.++..+..+- -|.+.+++.++. ...+.-++
T Consensus 32 VTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD~l 105 (266)
T 3grp_A 32 VTGATGGIGEAI-ARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANL-----SDRKSIKQLAEVAEREMEGIDIL 105 (266)
T ss_dssp ESSTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCT-----TSHHHHHHHHHHHHHHHTSCCEE
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeec-----CCHHHHHHHHHHHHHHcCCCCEE
Confidence 467777776641 122244788888776544444555556677777776631 255655555442 11123355
Q ss_pred EeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
+.+....+.+ ...+.++|+++.++
T Consensus 106 vnnAg~~~~~~~~~~~~~~~~~~~~v 131 (266)
T 3grp_A 106 VNNAGITRDGLFVRMQDQDWDDVLAV 131 (266)
T ss_dssp EECCCCC-----CCCHHHHHHHHHHH
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 5433322222 23456667766654
No 260
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=45.81 E-value=46 Score=29.28 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=49.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..|+++++-... .......|.+|++.+-.-.......+..|.++..+..+- -|.+.+++.++. ...+.-++
T Consensus 13 VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~l 86 (255)
T 4eso_A 13 VIGGTHGMGLAT-VRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDI-----ADLNEIAVLGAAAGQTLGAIDLL 86 (255)
T ss_dssp EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCT-----TCHHHHHHHHHHHHHHHSSEEEE
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccC-----CCHHHHHHHHHHHHHHhCCCCEE
Confidence 466777766641 122244788888876544444444445566777666531 255555544432 11133455
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+....+.+. ..+.+++++..++
T Consensus 87 v~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 87 HINAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHH
Confidence 54333322222 2467778877764
No 261
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=43.26 E-value=70 Score=28.05 Aligned_cols=95 Identities=18% Similarity=0.073 Sum_probs=50.0
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..|+++++-... .......|.+|++.+-.-.......+..+.++..+..+ --|.+.+++.+++ ...+.-++
T Consensus 13 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~l 86 (259)
T 4e6p_A 13 ITGSARGIGRAF-AEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMD-----VTRQDSIDAAIAATVEHAGGLDIL 86 (259)
T ss_dssp EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECC-----TTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEee-----CCCHHHHHHHHHHHHHHcCCCCEE
Confidence 467777776541 12234478888887654444444555556666666652 1255666555542 11123355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+++....+.+. ..+.++|++..++
T Consensus 87 v~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (259)
T 4e6p_A 87 VNNAALFDLAPIVEITRESYEKLFAI 112 (259)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHH
Confidence 54443333222 3467788877654
No 262
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=42.87 E-value=78 Score=28.04 Aligned_cols=95 Identities=16% Similarity=0.052 Sum_probs=50.8
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..||++++-... .......|.+|++.+-.-.......+..|.++..+..+- -|.+.+++.++. .-.+.-++
T Consensus 16 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~l 89 (271)
T 3tzq_B 16 ITGACGGIGLET-SRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDL-----TNEVSVRALIDFTIDTFGRLDIV 89 (271)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCC-----CCHHHHHHHHHHHHHHcCCCCEE
Confidence 467777766541 122244788888776554455555555576777666531 255666555542 11123355
Q ss_pred EeCCCCC-C-CCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHN-P-TGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~N-P-TG~--~~s~~~l~~i~~l 257 (459)
+.+.... + .+. .++.++|++..++
T Consensus 90 v~nAg~~~~~~~~~~~~~~~~~~~~~~v 117 (271)
T 3tzq_B 90 DNNAAHSDPADMLVTQMTVDVWDDTFTV 117 (271)
T ss_dssp EECCCCCCTTCCCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCCCccccCCHHHHHHHHHH
Confidence 5443322 2 111 3577888877664
No 263
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=42.31 E-value=19 Score=35.18 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeE--Eecc
Q 012628 239 HNPTGIDPTPEQWEKIADVIQEKNHIPF--FDVA 270 (459)
Q Consensus 239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii--~Dea 270 (459)
++|.|..+|++++++|++.|+++||-|| +|-.
T Consensus 85 ~~~~~~~YT~~di~eIv~YA~~rgI~VIPEID~P 118 (442)
T 2yl5_A 85 DDPNGTALTQAEVTELIEYAKSKDIGLIPAINSP 118 (442)
T ss_dssp CCTTCSCBCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCeeeeecccc
Confidence 4577889999999999999999999888 4543
No 264
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=42.24 E-value=13 Score=38.95 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-+|...+
T Consensus 254 ~~efk~lV~~~H~~Gi~VilDvV~NH~~ 281 (714)
T 2ya0_A 254 IAEFKNLINEIHKRGMGAILDVVYNHTA 281 (714)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCccc
Confidence 5999999999999999999999987665
No 265
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=42.06 E-value=62 Score=29.28 Aligned_cols=18 Identities=0% Similarity=-0.322 Sum_probs=13.0
Q ss_pred hHHHhhhCCCCeeeeeee
Q 012628 190 HKNIFNDARVPWSEYRYY 207 (459)
Q Consensus 190 ~~~~~~~~G~~v~~v~~~ 207 (459)
....++..|+..+.+|+.
T Consensus 37 ~~~~lk~~G~N~VRi~~~ 54 (302)
T 1bqc_A 37 AFADIKSHGANTVRVVLS 54 (302)
T ss_dssp HHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHcCCCEEEEEcc
Confidence 444566788888888874
No 266
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=41.48 E-value=46 Score=29.57 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=37.6
Q ss_pred eeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 203 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
.+|+. -++|.+|.-++.++... + ...++++.. .++.++++++.+.|++.|.-+++|-.
T Consensus 101 ~lPvL-rKDfi~~~~qi~ea~~~-G-AD~ilLi~a-------~l~~~~l~~l~~~a~~lGl~~lvEv~ 158 (251)
T 1i4n_A 101 CRPIL-AKDFYIDTVQVKLASSV-G-ADAILIIAR-------ILTAEQIKEIYEAAEELGMDSLVEVH 158 (251)
T ss_dssp CSCEE-EECCCCSTHHHHHHHHT-T-CSEEEEEGG-------GSCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCEE-EeeCCCCHHHHHHHHHc-C-CCEEEEecc-------cCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44543 33577787777664443 2 233344322 46678899999999999999988864
No 267
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=41.02 E-value=1.1e+02 Score=26.27 Aligned_cols=95 Identities=9% Similarity=0.092 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-.... ..++..|.++..+..+- -|.+.+++.+++ ...+.
T Consensus 10 ITGas~gIG~~~-a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~~~~i 83 (247)
T 3lyl_A 10 VTGASRGIGFEV-AHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNI-----SDIESIQNFFAEIKAENLAI 83 (247)
T ss_dssp ESSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHTTCCC
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777766541 1222447888887665433222 23344577777776631 255555554433 22223
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++++....+.+. ..+.+++++..++
T Consensus 84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (247)
T 3lyl_A 84 DILVNNAGITRDNLMMRMSEDEWQSVINT 112 (247)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 35554443332222 3466777776654
No 268
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=40.58 E-value=47 Score=29.64 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=47.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCC------------c---chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTW------------G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y------------~---~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
..|+++++-... .......|.+|++.+-.. . .....++..|.++..+..+- -|.+.+++
T Consensus 15 VTGas~gIG~~i-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~ 88 (287)
T 3pxx_A 15 VTGGARGQGRSH-AVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDV-----RDRAAVSR 88 (287)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCT-----TCHHHHHH
T ss_pred EeCCCChHHHHH-HHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccC-----CCHHHHHH
Confidence 467777766541 122344788887754220 0 11122334566777766531 25555555
Q ss_pred HHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012628 222 DIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (459)
Q Consensus 222 ~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l 257 (459)
.++. ...+.-+++.+....+.+...+.+++++..++
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (287)
T 3pxx_A 89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDV 127 (287)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhh
Confidence 4442 10123355544444444444667777777654
No 269
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=40.44 E-value=42 Score=29.75 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=45.4
Q ss_pred CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012628 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A 226 (459)
Q Consensus 150 ~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~ 226 (459)
+.+++ .||++++-... .......|.+|++..-.-......++..++..+..++ -|.+.+++.++. .
T Consensus 28 k~vlV---TGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~ 96 (260)
T 3gem_A 28 APILI---TGASQRVGLHC-ALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDF-------SCETGIMAFIDLLKTQ 96 (260)
T ss_dssp CCEEE---SSTTSHHHHHH-HHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCT-------TSHHHHHHHHHHHHHH
T ss_pred CEEEE---ECCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCC-------CCHHHHHHHHHHHHHh
Confidence 44555 67777776641 1222347877777654433334444444543333322 245555554432 1
Q ss_pred CCCcEEEEeCCCCC-CCCCCCCHHHHHHHHHH
Q 012628 227 PGGSFILLHGCAHN-PTGIDPTPEQWEKIADV 257 (459)
Q Consensus 227 ~~~~~~ii~~~p~N-PTG~~~s~~~l~~i~~l 257 (459)
..+.-+++.+.... +.....+.++|+++.++
T Consensus 97 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~v 128 (260)
T 3gem_A 97 TSSLRAVVHNASEWLAETPGEEADNFTRMFSV 128 (260)
T ss_dssp CSCCSEEEECCCCCCCCCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEECCCccCCCCCCCCHHHHHHHHHH
Confidence 11233455333322 22234455666666654
No 270
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=40.41 E-value=9.6 Score=39.88 Aligned_cols=29 Identities=7% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-+|...+.
T Consensus 315 ~~dfk~LV~~aH~~GI~VIlDvV~NHt~~ 343 (718)
T 2e8y_A 315 KTELKQMINTLHQHGLRVILDVVFNHVYK 343 (718)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Confidence 49999999999999999999999987764
No 271
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=40.31 E-value=1.1e+02 Score=26.62 Aligned_cols=94 Identities=18% Similarity=0.088 Sum_probs=47.3
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCC-cchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSF 231 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y-~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~ 231 (459)
..|+++++-.. +.. ....|.+|++.+-.- ......++..|.++..++.+- -|.+.+++.++. ...+.-
T Consensus 12 VTGas~gIG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id 84 (249)
T 2ew8_A 12 ITGGANGIGRA--IAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDV-----SQPGDVEAFGKQVISTFGRCD 84 (249)
T ss_dssp EETTTSHHHHH--HHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSCCC
T ss_pred EeCCCcHHHHH--HHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeec-----CCHHHHHHHHHHHHHHcCCCC
Confidence 46777777654 222 234787877764332 222223445566676666531 255666555432 111233
Q ss_pred EEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 232 ILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 232 ~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+++.+....+.+. ..+.++++++.++
T Consensus 85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (249)
T 2ew8_A 85 ILVNNAGIYPLIPFDELTFEQWKKTFEI 112 (249)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 5554443333232 2466777777654
No 272
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=40.25 E-value=82 Score=28.00 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=51.7
Q ss_pred ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CC
Q 012628 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (459)
Q Consensus 151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~ 227 (459)
.+++ ..|+++++-... .......|.+|++.+-.-.......+..+.++..+..+- -|.+.+++.++. ..
T Consensus 29 k~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~ 100 (272)
T 4dyv_A 29 KIAI--VTGAGSGVGRAV-AVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDV-----TDPDSVRALFTATVEKF 100 (272)
T ss_dssp CEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCT-----TSHHHHHHHHHHHHHHH
T ss_pred CEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecC-----CCHHHHHHHHHHHHHHc
Confidence 3444 477777776652 122244788888876544444445555566666666531 255666555542 11
Q ss_pred CCcEEEEeCCCCC-CCCC--CCCHHHHHHHHHH
Q 012628 228 GGSFILLHGCAHN-PTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 228 ~~~~~ii~~~p~N-PTG~--~~s~~~l~~i~~l 257 (459)
.+.-+++.+..-. +.+. .++.++|+++.++
T Consensus 101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~v 133 (272)
T 4dyv_A 101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDT 133 (272)
T ss_dssp SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHh
Confidence 1233455333322 2121 3567888877664
No 273
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=39.97 E-value=47 Score=28.78 Aligned_cols=94 Identities=15% Similarity=-0.029 Sum_probs=46.4
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 232 (459)
..|+++++-.. +.. ....|.+|++.+-.-.......+..+.++..+..+- -|.+.+++.++. ...+.-+
T Consensus 8 VTGas~GIG~a--~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~ 80 (235)
T 3l6e_A 8 VTGAGSGLGRA--LTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADL-----AHHEDVDVAFAAAVEWGGLPEL 80 (235)
T ss_dssp EESTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCT-----TSHHHHHHHHHHHHHHHCSCSE
T ss_pred EECCCCHHHHH--HHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCC-----CCHHHHHHHHHHHHHhcCCCcE
Confidence 46777777665 222 234788888776544334444333344555555521 245555555442 1112234
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
++.+....+.+. ..+.++++++.++
T Consensus 81 lvnnAg~~~~~~~~~~~~~~~~~~~~~ 107 (235)
T 3l6e_A 81 VLHCAGTGEFGPVGVYTAEQIRRVMES 107 (235)
T ss_dssp EEEECCCC------CCCHHHHHHHHHH
T ss_pred EEECCCCCCCCChHhCCHHHHHHHHHH
Confidence 554333332222 3577888877765
No 274
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=39.93 E-value=76 Score=27.74 Aligned_cols=99 Identities=14% Similarity=0.040 Sum_probs=50.8
Q ss_pred CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012628 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A 226 (459)
Q Consensus 150 ~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~ 226 (459)
+.+++ .|+++++-... .......|.+|++.+-.-.......+..+.++..+..+- -|.+.+++.++. .
T Consensus 10 k~vlI---TGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 10 KVALI---TGAGSGFGEGM-AKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADI-----SKEADVDAAVEAALSK 80 (261)
T ss_dssp CEEEE---ETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCT-----TSHHHHHHHHHHHHHH
T ss_pred CEEEE---ECCCchHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecC-----CCHHHHHHHHHHHHHh
Confidence 44544 66666665541 122244788888876554444455555566777776631 245555555442 1
Q ss_pred CCCcEEEEeCCCC-CCCCC--CCCHHHHHHHHHH
Q 012628 227 PGGSFILLHGCAH-NPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 227 ~~~~~~ii~~~p~-NPTG~--~~s~~~l~~i~~l 257 (459)
..+.-+++++... .+.+. ..+.+++++..++
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGV 114 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHH
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHH
Confidence 1122345543322 21221 2467777777654
No 275
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=39.74 E-value=1.9e+02 Score=25.06 Aligned_cols=93 Identities=11% Similarity=-0.040 Sum_probs=48.9
Q ss_pred hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHhc-CCeeEE
Q 012628 190 HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWEKIADVIQEK-NHIPFF 267 (459)
Q Consensus 190 ~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~-~p~NPTG~~~s~~~l~~i~~l~~~~-~~~ii~ 267 (459)
....++..|.++ .+-+.+. -+++.+++.+.. ...+++.+ +|.. .|..+.++.+++|.++.+.. ++.+.+
T Consensus 104 ~i~~i~~~G~k~-gval~p~----t~~e~l~~~l~~---~D~Vl~msv~pGf-~Gq~f~~~~l~ki~~lr~~~~~~~I~V 174 (228)
T 3ovp_A 104 LIKDIRENGMKV-GLAIKPG----TSVEYLAPWANQ---IDMALVMTVEPGF-GGQKFMEDMMPKVHWLRTQFPSLDIEV 174 (228)
T ss_dssp HHHHHHHTTCEE-EEEECTT----SCGGGTGGGGGG---CSEEEEESSCTTT-CSCCCCGGGHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHcCCCE-EEEEcCC----CCHHHHHHHhcc---CCeEEEeeecCCC-CCcccCHHHHHHHHHHHHhcCCCCEEE
Confidence 344556677664 3344321 245555554443 22333332 2322 57777777777777776554 466767
Q ss_pred eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012628 268 DVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (459)
Q Consensus 268 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (459)
|.- .... .+..+...+-++++++|
T Consensus 175 dGG---I~~~-------t~~~~~~aGAd~~VvGs 198 (228)
T 3ovp_A 175 DGG---VGPD-------TVHKCAEAGANMIVSGS 198 (228)
T ss_dssp ESS---CSTT-------THHHHHHHTCCEEEESH
T ss_pred eCC---cCHH-------HHHHHHHcCCCEEEEeH
Confidence 743 2211 34445555666776664
No 276
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=39.69 E-value=1.1e+02 Score=26.67 Aligned_cols=94 Identities=14% Similarity=0.013 Sum_probs=47.2
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 232 (459)
..|+++++-.. +.. ....|.+|++..-.-.......+..+.++..++.+- -|.+.+++.++.. ..+.-+
T Consensus 17 VTGasggiG~~--~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id~ 89 (265)
T 2o23_A 17 ITGGASGLGLA--TAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADV-----TSEKDVQTALALAKGKFGRVDV 89 (265)
T ss_dssp EETTTSHHHHH--HHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCE
T ss_pred EECCCChHHHH--HHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCC-----CCHHHHHHHHHHHHHHCCCCCE
Confidence 46777777654 222 234787777765433344444444466666666531 2556666555421 012235
Q ss_pred EEeCCCCCCCCC--------CCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTGI--------DPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG~--------~~s~~~l~~i~~l 257 (459)
++.+......+. ..+.+++++..++
T Consensus 90 li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (265)
T 2o23_A 90 AVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDV 122 (265)
T ss_dssp EEECCCCCCCCCSEETTTTEECCHHHHHHHHHH
T ss_pred EEECCccCCCCccccccccCCCCHHHHHHHHHH
Confidence 554433222221 1466777766653
No 277
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=39.67 E-value=20 Score=35.09 Aligned_cols=34 Identities=6% Similarity=0.189 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
+..-|+. ++++++++-|+++|+-||.|-++...+
T Consensus 70 ~~~~Gt~---~df~~lv~~aH~~Gi~VilD~V~NH~~ 103 (496)
T 4gqr_A 70 CTRSGNE---DEFRNMVTRCNNVGVRIYVDAVINHMC 103 (496)
T ss_dssp CBTTBCH---HHHHHHHHHHHHTTCEEEEEECCSEEE
T ss_pred CCCCCCH---HHHHHHHHHHHHCCCEEEEEEccCcCC
Confidence 3334555 999999999999999999999987654
No 278
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=39.15 E-value=41 Score=31.28 Aligned_cols=17 Identities=0% Similarity=-0.263 Sum_probs=13.9
Q ss_pred hHHHhhhCCCCeeeeee
Q 012628 190 HKNIFNDARVPWSEYRY 206 (459)
Q Consensus 190 ~~~~~~~~G~~v~~v~~ 206 (459)
-...++.+|++++.++-
T Consensus 118 k~~~~~~~GA~v~~~~~ 134 (341)
T 1f2d_A 118 NIELSRIMGADVRVIED 134 (341)
T ss_dssp HHHHHHHTTCEEEECCC
T ss_pred cHHHHHhCCCEEEEeCC
Confidence 56678899999998875
No 279
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=38.81 E-value=39 Score=34.07 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=41.6
Q ss_pred hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE--Eecc
Q 012628 194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF--FDVA 270 (459)
Q Consensus 194 ~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii--~Dea 270 (459)
+..++..+..+.+.++.+|.+..+..-+.-.. .. ...|..+|++++++|++.|+++||-|| +|-.
T Consensus 213 mA~~KlN~lH~HltDdqgwrlei~~~P~Lt~~---Ga---------~~~~~~YT~~di~eiv~yA~~rgI~VIPEId~P 279 (572)
T 3ozo_A 213 MAAVKLNTFHWHITDSQSFPFVTTKRPNLYKF---GA---------LSPQKVYTKAAIREVVRFGLERGVRVLPEFDAP 279 (572)
T ss_dssp HHHTTCCEEEEECCCSSCCCBCCSSSHHHHHH---HS---------SSSSSCBCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred HHHcCCceEEEEeecCcCceeccccCcchhcc---CC---------cCCCCCcCHHHHHHHHHHHHHhCCceeeeeccc
Confidence 33456666666665555666655444332221 00 113568999999999999999999887 4543
No 280
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=38.73 E-value=19 Score=35.10 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeE--Eecc
Q 012628 239 HNPTGIDPTPEQWEKIADVIQEKNHIPF--FDVA 270 (459)
Q Consensus 239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii--~Dea 270 (459)
++|.|..+|++++++|++.|+++||-|| +|-.
T Consensus 82 ~~~~~~~YT~~di~eIv~YA~~rgI~VIPEID~P 115 (434)
T 2yl6_A 82 NDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSP 115 (434)
T ss_dssp CCTTCSCEEHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 3466889999999999999999999888 4544
No 281
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=38.56 E-value=1.1e+02 Score=27.11 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=49.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-...... ++..|.++..+..+ --|.+.+++.++. ...+.
T Consensus 31 VTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~i 104 (271)
T 4ibo_A 31 VTGSSRGLGRAM-AEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFD-----VTSESEIIEAFARLDEQGIDV 104 (271)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCC-----TTCHHHHHHHHHHHHHHTCCC
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC-----CCCHHHHHHHHHHHHHHCCCC
Confidence 467777776641 122345788888876543333322 33456666666552 1255666555543 11123
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+..-.+.+. ..+.++|++..++
T Consensus 105 D~lv~nAg~~~~~~~~~~~~~~~~~~~~v 133 (271)
T 4ibo_A 105 DILVNNAGIQFRKPMIELETADWQRVIDT 133 (271)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCchhCCHHHHHHHHHH
Confidence 35554433322222 3577888877764
No 282
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=37.34 E-value=2.1e+02 Score=25.08 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=46.9
Q ss_pred hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHH---HHHHHhc--CC
Q 012628 190 HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH-GCAHNPTGIDPTPEQWEKI---ADVIQEK--NH 263 (459)
Q Consensus 190 ~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~-~~p~NPTG~~~s~~~l~~i---~~l~~~~--~~ 263 (459)
....++.+|.++ .+-+.+. -+++.++..+.. ...+++. .+|.. .|+.+-++.+++| .+++.++ ++
T Consensus 126 ~i~~ir~~G~k~-Gvalnp~----Tp~e~l~~~l~~---vD~VlvMsV~PGf-gGQ~fi~~~l~KI~~lr~~~~~~~~~~ 196 (246)
T 3inp_A 126 SLQLIKSFGIQA-GLALNPA----TGIDCLKYVESN---IDRVLIMSVNPGF-GGQKFIPAMLDKAKEISKWISSTDRDI 196 (246)
T ss_dssp HHHHHHTTTSEE-EEEECTT----CCSGGGTTTGGG---CSEEEEECSCTTC---CCCCTTHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHcCCeE-EEEecCC----CCHHHHHHHHhc---CCEEEEeeecCCC-CCcccchHHHHHHHHHHHHHHhcCCCe
Confidence 445566778765 3445322 134555555543 2233332 23332 3665555555444 4444443 47
Q ss_pred eeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEEc
Q 012628 264 IPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (459)
Q Consensus 264 ~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (459)
.|-+|.- .... .+..+.+.+-++++++|
T Consensus 197 ~I~VDGG---I~~~-------ti~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 197 LLEIDGG---VNPY-------NIAEIAVCGVNAFVAGS 224 (246)
T ss_dssp EEEEESS---CCTT-------THHHHHTTTCCEEEESH
T ss_pred eEEEECC---cCHH-------HHHHHHHcCCCEEEEeh
Confidence 7888843 3321 34455666677887775
No 283
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=37.04 E-value=72 Score=27.81 Aligned_cols=95 Identities=18% Similarity=0.110 Sum_probs=47.3
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..|+++++-... .......|.+|++..-.-.......+..+.+...+..+ --|.+.+++.++. ...+.-++
T Consensus 14 VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~l 87 (248)
T 3op4_A 14 VTGASRGIGKAI-AELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALN-----VTNPESIEAVLKAITDEFGGVDIL 87 (248)
T ss_dssp ESSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECC-----TTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEe-----CCCHHHHHHHHHHHHHHcCCCCEE
Confidence 466777766541 12234478888876544333333444444444555542 1255666555542 11123355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+....+.+. ..+.++|++..++
T Consensus 88 v~nAg~~~~~~~~~~~~~~~~~~~~v 113 (248)
T 3op4_A 88 VNNAGITRDNLLMRMKEEEWSDIMET 113 (248)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHH
Confidence 54433333232 3467788877654
No 284
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=36.85 E-value=68 Score=28.86 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEec
Q 012628 210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDV 269 (459)
Q Consensus 210 ~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~De 269 (459)
++|.+|..++.++... + ...++++.. .++.++++++.+.|++.|+-+++|-
T Consensus 126 Kdfi~d~~qi~ea~~~-G-AD~VlLi~a-------~L~~~~l~~l~~~a~~lGl~~lvev 176 (272)
T 3tsm_A 126 KDFLFDPYQVYEARSW-G-ADCILIIMA-------SVDDDLAKELEDTAFALGMDALIEV 176 (272)
T ss_dssp ESCCCSTHHHHHHHHT-T-CSEEEEETT-------TSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCccCCHHHHHHHHHc-C-CCEEEEccc-------ccCHHHHHHHHHHHHHcCCeEEEEe
Confidence 3677888888887654 2 344444432 4567899999999999999988876
No 285
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=36.61 E-value=18 Score=39.45 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-+|...+
T Consensus 561 ~~efk~lV~~~H~~GI~VIlDvV~NHt~ 588 (1014)
T 2ya1_A 561 IAEFKNLINEIHKRGMGAILDVVYNHTA 588 (1014)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence 5999999999999999999999997765
No 286
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=36.32 E-value=85 Score=27.48 Aligned_cols=95 Identities=15% Similarity=0.006 Sum_probs=49.1
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++.+-.-..... .++..|.++..+..+- -|.+.+++.++. ...+.
T Consensus 17 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~i 90 (256)
T 3gaf_A 17 VTGAAAGIGRAI-AGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNV-----TDEQHREAVIKAALDQFGKI 90 (256)
T ss_dssp ECSCSSHHHHHH-HHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777776541 12223468888876544332222 2334577777776631 255655555442 11123
Q ss_pred EEEEeCCCCCC-CCCCCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNP-TGIDPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NP-TG~~~s~~~l~~i~~l 257 (459)
-+++.+....+ .....+.+++++..++
T Consensus 91 d~lv~nAg~~~~~~~~~~~~~~~~~~~v 118 (256)
T 3gaf_A 91 TVLVNNAGGGGPKPFDMPMSDFEWAFKL 118 (256)
T ss_dssp CEEEECCCCCCCCCTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHH
Confidence 35554433222 2225677888887654
No 287
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=36.12 E-value=1.9e+02 Score=25.47 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=47.3
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~i 233 (459)
..||++++-... .......|.+|++.+-.-.... ..++..|.++..+..+-.+ .-+.+.+.+.+.+. .+.-++
T Consensus 38 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~-g~iD~l 113 (275)
T 4imr_A 38 VTGSSRGIGAAI-AEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE--AGAGTDLIERAEAI-APVDIL 113 (275)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS--TTHHHHHHHHHHHH-SCCCEE
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--HHHHHHHHHHHHHh-CCCCEE
Confidence 467777776641 1222447888877653322222 2333456777777663211 12334444443332 133355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+....+.+. ..+.++|++..++
T Consensus 114 vnnAg~~~~~~~~~~~~~~~~~~~~v 139 (275)
T 4imr_A 114 VINASAQINATLSALTPNDLAFQLAV 139 (275)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 54433322222 3567778777664
No 288
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=36.01 E-value=92 Score=27.55 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=48.8
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-..... .++..|.++..+..+- -|.+.+++.++. .-.+.
T Consensus 9 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~i 82 (264)
T 3tfo_A 9 ITGASGGIGEGI-ARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDV-----TDRHSVAAFAQAAVDTWGRI 82 (264)
T ss_dssp ESSTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EeCCccHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777776652 12224478888876544322222 2334466666666531 255555555442 11123
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+..-.+.+. ..+.++|+++.++
T Consensus 83 D~lVnnAG~~~~~~~~~~~~~~~~~~~~v 111 (264)
T 3tfo_A 83 DVLVNNAGVMPLSPLAAVKVDEWERMIDV 111 (264)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 35554443333332 3467888877765
No 289
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=35.94 E-value=2.1e+02 Score=26.30 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=48.3
Q ss_pred hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEec
Q 012628 190 HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDV 269 (459)
Q Consensus 190 ~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~De 269 (459)
+....+.+|.+.. +.++..-+.-++.+.+.- +-.++-+ -+||.|...+.+...++++.|+++|+-+++|-
T Consensus 11 ~~~~~e~~g~~~~-----~~~G~~~~~~~ilk~~G~--n~vRlri---~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~ 80 (334)
T 1fob_A 11 SLLLLEDEGYSYK-----NLNGQTQALETILADAGI--NSIRQRV---WVNPSDGSYDLDYNLELAKRVKAAGMSLYLDL 80 (334)
T ss_dssp THHHHHHTTCCCB-----CTTSCBCCHHHHHHHHTC--CEEEEEE---CSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCEEE-----CCCCCCchHHHHHHHcCC--CEEEEEE---EECCCCCccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3445677787641 122323344444433332 2234433 37888888899999999999999999999997
Q ss_pred cCCCC
Q 012628 270 AYQGF 274 (459)
Q Consensus 270 ay~~~ 274 (459)
-|++.
T Consensus 81 hysd~ 85 (334)
T 1fob_A 81 HLSDT 85 (334)
T ss_dssp CCSSS
T ss_pred ccCCC
Confidence 66544
No 290
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=35.79 E-value=1.4e+02 Score=26.78 Aligned_cols=95 Identities=17% Similarity=0.073 Sum_probs=49.1
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh---hhCC-CCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---NDAR-VPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---~~~G-~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..||++++-... ...+...|.+|++.+-.-....... +..| .++..+..+ --|.+.+++.++. .-.+
T Consensus 46 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~ 119 (293)
T 3rih_A 46 VTGGTKGIGRGI-ATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLD-----VSDPGSCADAARTVVDAFGA 119 (293)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECC-----TTCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEe-----CCCHHHHHHHHHHHHHHcCC
Confidence 467777776651 1222447888887765443333332 2333 456666552 1255555555432 1112
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+. .++.++|+++.++
T Consensus 120 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 149 (293)
T 3rih_A 120 LDVVCANAGIFPEARLDTMTPEQLSEVLDV 149 (293)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 335554443333332 4577888888765
No 291
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=35.54 E-value=48 Score=29.51 Aligned_cols=78 Identities=6% Similarity=-0.034 Sum_probs=49.3
Q ss_pred EEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012628 180 VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ 259 (459)
Q Consensus 180 Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~ 259 (459)
|+.....|.+....++... ..+.+|+. -++|-+|.-++.++-.- + ...++++. .+++.++++++.++|+
T Consensus 82 VLTd~~~F~Gs~~~L~~vr-~~v~lPvL-rKDFiid~yQI~eAr~~-G-ADaILLI~-------a~L~~~~l~~l~~~A~ 150 (258)
T 4a29_A 82 ITTEEKYFNGSYETLRKIA-SSVSIPIL-MSDFIVKESQIDDAYNL-G-ADTVLLIV-------KILTERELESLLEYAR 150 (258)
T ss_dssp EECCSTTTCCCHHHHHHHH-TTCSSCEE-EESCCCSHHHHHHHHHH-T-CSEEEEEG-------GGSCHHHHHHHHHHHH
T ss_pred EeCCCCCCCCCHHHHHHHH-HhcCCCEe-eccccccHHHHHHHHHc-C-CCeeehHH-------hhcCHHHHHHHHHHHH
Confidence 4444455555444444321 22345654 45799999888776543 1 33444443 4567799999999999
Q ss_pred hcCCeeEEe
Q 012628 260 EKNHIPFFD 268 (459)
Q Consensus 260 ~~~~~ii~D 268 (459)
+.|+-+++.
T Consensus 151 ~lGl~~LvE 159 (258)
T 4a29_A 151 SYGMEPLIL 159 (258)
T ss_dssp HTTCCCEEE
T ss_pred HHhHHHHHh
Confidence 999988874
No 292
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=35.38 E-value=1.1e+02 Score=26.95 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=48.9
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..||+.++-.+. .......|.+|++.+-.-...... ...+.++..+..+- -|.+++++.++. .-.+.-++
T Consensus 7 VTGas~GIG~ai-a~~la~~Ga~V~~~~~~~~~~~~~-~~~~~~~~~~~~Dv-----~~~~~v~~~v~~~~~~~g~iDiL 79 (247)
T 3ged_A 7 VTGGGHGIGKQI-CLDFLEAGDKVCFIDIDEKRSADF-AKERPNLFYFHGDV-----ADPLTLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHH-HTTCTTEEEEECCT-----TSHHHHHHHHHHHHHHHSCCCEE
T ss_pred EecCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHH-HHhcCCEEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEE
Confidence 356666666552 222345888888866442222222 23355666666531 245555544432 11133355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+...++.+. .++.++|+++.++
T Consensus 80 VNNAG~~~~~~~~~~~~e~~~~~~~v 105 (247)
T 3ged_A 80 VNNACRGSKGILSSLLYEEFDYILSV 105 (247)
T ss_dssp EECCCCCCCCGGGTCCHHHHHHHHHH
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 54444444443 3678889988876
No 293
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=35.26 E-value=83 Score=27.77 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=50.6
Q ss_pred cccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012628 147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 147 ~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
+..+.+++ .||++++-... .......|.+|++..-.-.. ....++..|.++..++.+- -|.+.+++.
T Consensus 27 l~~k~vlI---TGas~gIG~~l-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~ 97 (271)
T 4iin_A 27 FTGKNVLI---TGASKGIGAEI-AKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDA-----ASESDFIEA 97 (271)
T ss_dssp CSCCEEEE---TTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHH
T ss_pred cCCCEEEE---ECCCcHHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCC-----CCHHHHHHH
Confidence 33455555 67777766541 12224478777765432211 2233445677777776631 255555555
Q ss_pred HHc---CCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 223 IKA---APGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 223 i~~---~~~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
++. ...+.-+++.+....+.+. ..+.+++++..++
T Consensus 98 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~ 137 (271)
T 4iin_A 98 IQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDN 137 (271)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHh
Confidence 442 1112335554433322222 3466777777654
No 294
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=35.03 E-value=2.2e+02 Score=24.62 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=25.8
Q ss_pred CCCCCHHH---HHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEE-c
Q 012628 243 GIDPTPEQ---WEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ-S 301 (459)
Q Consensus 243 G~~~s~~~---l~~i~~l~~~--~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-S 301 (459)
|..+.++. ++++.++..+ +++.|-+|. +.... .+..+...+-++++++ |
T Consensus 143 gQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdG---GI~~~-------~~~~~~~aGAd~~V~G~s 197 (231)
T 3ctl_A 143 GQPFIPEMLDKLAELKAWREREGLEYEIEVDG---SCNQA-------TYEKLMAAGADVFIVGTS 197 (231)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEES---CCSTT-------THHHHHHHTCCEEEECTT
T ss_pred CccccHHHHHHHHHHHHHHhccCCCceEEEEC---CcCHH-------HHHHHHHcCCCEEEEccH
Confidence 55555344 4455555543 357777774 23211 3445555666777776 5
No 295
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=34.93 E-value=1.2e+02 Score=26.35 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=47.2
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 232 (459)
..|+++++-.. +.. ....|.+|++.+-.-.......+..|.++..+..+ --|.+.+++.++.. ..+.-+
T Consensus 11 VTGas~giG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~ 83 (253)
T 1hxh_A 11 VTGGASGVGLE--VVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHD-----VSSEADWTLVMAAVQRRLGTLNV 83 (253)
T ss_dssp ETTTTSHHHHH--HHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCC-----TTCHHHHHHHHHHHHHHHCSCCE
T ss_pred EeCCCcHHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCE
Confidence 46777777665 222 23478888877644333333333335566665542 12556665554431 112235
Q ss_pred EEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
++.+....+.+ ...+.+++++..++
T Consensus 84 lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 1hxh_A 84 LVNNAGILLPGDMETGRLEDFSRLLKI 110 (253)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHh
Confidence 55443332222 23466777776654
No 296
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=34.54 E-value=23 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 243 GIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
|.. +--++|.++|+++|+.++.|..
T Consensus 24 G~~---~~A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 24 GKD---AKALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp EET---HHHHHHHHHHHHTTCCEEECHH
T ss_pred eCc---HHHHHHHHHHHHcCCCEEeCHH
Confidence 555 6778899999999999999975
No 297
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=34.53 E-value=1.8e+02 Score=25.02 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=50.2
Q ss_pred CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcC-CCCcc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc
Q 012628 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS-PTWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA 225 (459)
Q Consensus 150 ~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~-p~y~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~ 225 (459)
+..++ ..||++++-... .......|.+|++.. ..-.. ....++..+.++..+..+ --|.+.+++.++.
T Consensus 13 ~k~vl--ITGas~giG~~i-a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~ 84 (256)
T 3ezl_A 13 QRIAY--VTGGMGGIGTSI-CQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGN-----VGDWDSTKQAFDK 84 (256)
T ss_dssp CEEEE--ETTTTSHHHHHH-HHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECC-----TTCHHHHHHHHHH
T ss_pred CCEEE--EECCCChHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecC-----CCCHHHHHHHHHH
Confidence 34444 477777776641 122344787777643 22222 233344556676666653 1255555555443
Q ss_pred ---CCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 226 ---APGGSFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 226 ---~~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
...+.-+++.+....+.+ ...+.+++++..++
T Consensus 85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~v 121 (256)
T 3ezl_A 85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDT 121 (256)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 112344555443332222 23567777777664
No 298
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=34.12 E-value=1.4e+02 Score=26.76 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=47.8
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCC------------Ccc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT------------WGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~------------y~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
..|+++++-... .......|.+|++.+-. -.. ....++..|.++..+..+- -|.+.+++
T Consensus 33 VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~ 106 (299)
T 3t7c_A 33 ITGAARGQGRSH-AITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDV-----RDFDAMQA 106 (299)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHH
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCC-----CCHHHHHH
Confidence 467777776652 12234478888775422 111 1222345577777776631 25566655
Q ss_pred HHHc---CCCCcEEEEeCCCCCCCCC---CCCHHHHHHHHHH
Q 012628 222 DIKA---APGGSFILLHGCAHNPTGI---DPTPEQWEKIADV 257 (459)
Q Consensus 222 ~i~~---~~~~~~~ii~~~p~NPTG~---~~s~~~l~~i~~l 257 (459)
.++. ...+.-+++.+....+.+. .++.++|++..++
T Consensus 107 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 148 (299)
T 3t7c_A 107 AVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDV 148 (299)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 5542 1112334554433222222 3577888887764
No 299
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=33.91 E-value=64 Score=28.05 Aligned_cols=92 Identities=14% Similarity=0.033 Sum_probs=44.2
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 232 (459)
..|+++++-.. +.. ....|.+|++..-.-.......+..| +..+..+ --|.+.+++.++.. ..+.-+
T Consensus 10 VTGas~giG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~D-----~~~~~~~~~~~~~~~~~~g~id~ 80 (245)
T 1uls_A 10 ITGAAHGIGRA--TLELFAKEGARLVACDIEEGPLREAAEAVG--AHPVVMD-----VADPASVERGFAEALAHLGRLDG 80 (245)
T ss_dssp EESTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHTTT--CEEEECC-----TTCHHHHHHHHHHHHHHHSSCCE
T ss_pred EECCCCHHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHcC--CEEEEec-----CCCHHHHHHHHHHHHHHcCCCCE
Confidence 46777777664 222 23478888776533222333333445 3334332 12556665554431 012335
Q ss_pred EEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
++.+....+.+ ...+.++|++..++
T Consensus 81 lvn~Ag~~~~~~~~~~~~~~~~~~~~~ 107 (245)
T 1uls_A 81 VVHYAGITRDNFHWKMPLEDWELVLRV 107 (245)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55433322222 22466777777664
No 300
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=33.44 E-value=1.1e+02 Score=27.13 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=48.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..||++++-... .......|.+|++..-.-.......+ ..|.++..+..+- -|.+.+++.++. ...+
T Consensus 32 VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 105 (277)
T 4fc7_A 32 ITGGGSGIGFRI-AEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDV-----RAPPAVMAAVDQALKEFGR 105 (277)
T ss_dssp EETTTSHHHHHH-HHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776652 12234578888876544332222222 2466777776631 255555555442 1112
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+..-.+.+. .++.++|+++.++
T Consensus 106 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 135 (277)
T 4fc7_A 106 IDILINCAAGNFLCPAGALSFNAFKTVMDI 135 (277)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCcCCCCCCcccCCHHHHHHHHHH
Confidence 335554433222222 2567888877764
No 301
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=32.74 E-value=84 Score=27.76 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=48.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCC-CCc---chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSP-TWG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p-~y~---~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~ 229 (459)
..|+++++-... .......|.+|++..- .-. .....++..|.++..+..+- -|.+.+++.++.. ..+
T Consensus 23 VTGas~gIG~ai-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 96 (270)
T 3is3_A 23 VTGSGRGIGAAV-AVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADI-----RQVPEIVKLFDQAVAHFGH 96 (270)
T ss_dssp ESCTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCT-----TSHHHHHHHHHHHHHHHSC
T ss_pred EECCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776641 1223447888877432 211 12233445677777777631 2556665555431 112
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+. ..+.++|++..++
T Consensus 97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 126 (270)
T 3is3_A 97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSL 126 (270)
T ss_dssp CCEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 335553333333332 2477888877764
No 302
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=32.73 E-value=23 Score=37.80 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-+|...+
T Consensus 369 ~~efk~lV~~~H~~GI~VILDvV~NH~a 396 (877)
T 3faw_A 369 IAELKQLIHDIHKRGMGVILDVVYNHTA 396 (877)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccc
Confidence 4999999999999999999999987665
No 303
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=32.71 E-value=38 Score=31.71 Aligned_cols=53 Identities=9% Similarity=-0.133 Sum_probs=35.5
Q ss_pred ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeee
Q 012628 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY 206 (459)
Q Consensus 151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~ 206 (459)
.|+. +++|+.+..++.. .+.+.-.-+|++|.-.-..-...++.+|++|+.++-
T Consensus 89 ~Vv~--aSsGN~g~alA~~-aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 89 TLIE--PTSGNMGISMAFM-AAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp EEEE--ECSSHHHHHHHHH-HHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEE--eCCcHHHHHHHHH-HHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 4554 7888888888732 233443356777665544556678899999998864
No 304
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=32.47 E-value=39 Score=32.31 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 68 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~ 96 (405)
T 1ht6_A 68 AAELKSLIGALHGKGVQAIADIVINHRCA 96 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcccC
Confidence 59999999999999999999999877664
No 305
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=32.41 E-value=82 Score=31.60 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=46.2
Q ss_pred CCCCEEEEcCCCCcchH-------HHhhhCCCCeee-----eeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCC
Q 012628 175 FPGAKVLISSPTWGNHK-------NIFNDARVPWSE-----YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (459)
Q Consensus 175 ~~gd~Vlv~~p~y~~~~-------~~~~~~G~~v~~-----v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPT 242 (459)
.+||.|++.....++.. +.+...|++++. +.+ .+--+-++|...++... ++.++. .|
T Consensus 322 ~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~----SgHa~~~eL~~~~~~~~--Pk~~ip--vH--- 390 (555)
T 3zq4_A 322 NPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHT----SGHGGQEEQKLMLRLIK--PKFFMP--IH--- 390 (555)
T ss_dssp CTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCC----CSSCCHHHHHHHHHHSC--EEEEEE--ES---
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEE----eCCCCHHHHHHHHHHhC--CCEEEE--cC---
Confidence 37899999987665543 233467888764 222 33457788888777642 333331 12
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 012628 243 GIDPTPEQWEKIADVIQEKNH 263 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~ 263 (459)
|-. ..+.+.++++++.|+
T Consensus 391 Ge~---~~~~~~~~~a~~~G~ 408 (555)
T 3zq4_A 391 GEY---RMQKMHVKLATDCGI 408 (555)
T ss_dssp BCH---HHHHHHHHHHHHTTC
T ss_pred CCH---HHHHHHHHHHHHcCC
Confidence 322 677788888887664
No 306
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=32.36 E-value=35 Score=33.03 Aligned_cols=29 Identities=3% Similarity=0.173 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 69 ~~df~~lv~~aH~~Gi~VilD~V~NH~~~ 97 (441)
T 1lwj_A 69 EREFKEMIEAFHDSGIKVVLDLPIHHTGF 97 (441)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcccC
Confidence 49999999999999999999999877764
No 307
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=32.36 E-value=28 Score=33.91 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 64 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~ 92 (448)
T 1g94_A 64 RAQFIDMVNRCSAAGVDIYVDTLINHMAA 92 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeeccccC
Confidence 49999999999999999999999876654
No 308
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=31.95 E-value=2.1e+02 Score=24.80 Aligned_cols=95 Identities=15% Similarity=0.054 Sum_probs=47.8
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEc-CCCCcch---HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLIS-SPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~-~p~y~~~---~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..|+++++-... .......|.+|++. ...-... ...++..|.++..+..+- -|.+.+++.+++ .-.+
T Consensus 13 VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 86 (259)
T 3edm_A 13 VAGAGRDIGRAC-AIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADL-----TNAAEVEAAISAAADKFGE 86 (259)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCT-----TCHHHHHHHHHHHHHHHCS
T ss_pred EECCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCC-----CCHHHHHHHHHHHHHHhCC
Confidence 466777666541 12224478888776 4332222 223344566777776531 255666555543 1113
Q ss_pred cEEEEeCCCCC-CCC--CCCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHN-PTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~N-PTG--~~~s~~~l~~i~~l 257 (459)
.-+++.+.... +.+ ...+.++|++..++
T Consensus 87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 117 (259)
T 3edm_A 87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDV 117 (259)
T ss_dssp EEEEEECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCccCCCCChhhCCHHHHHHHHHH
Confidence 34555433222 222 24577778877664
No 309
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=31.59 E-value=3e+02 Score=25.03 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=19.5
Q ss_pred CCC--CCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 239 HNP--TGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 239 ~NP--TG~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
|+| ||..++.+.+.+|++ ..++.=|=|..
T Consensus 141 n~P~~tg~~l~~~~~~~La~---~pnIvgiKdss 171 (311)
T 3h5d_A 141 NIPGRVVVELTPETMLRLAD---HPNIIGVKECT 171 (311)
T ss_dssp ECHHHHSSCCCHHHHHHHHT---STTEEEEEECS
T ss_pred ecccccCCCCCHHHHHHHhc---CCCEEEEEeCC
Confidence 455 799999998777764 24565565643
No 310
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=31.42 E-value=2.9e+02 Score=27.14 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=51.9
Q ss_pred cCceEEeecccc---hhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCC---HHHHHH
Q 012628 149 EQRVATVQGLSG---TGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD---FEGMIA 221 (459)
Q Consensus 149 ~~~i~~~~t~gg---t~a~~l~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d---~e~l~~ 221 (459)
..++.+ ..|+ ++|-.+++. +.++.| +.|-+..|. .....+...--++...++.++ +..+. ++.+.+
T Consensus 244 ~G~vlv--igGs~~~~GA~~Laa~--aAlr~GaGlv~~~~~~--~~~~~~~~~~PE~m~~~~~~~-~~~~~~~~~~~~~~ 316 (502)
T 3rss_A 244 YGKVLI--IAGSRLYSGAPVLSGM--GSLKVGTGLVKLAVPF--PQNLIATSRFPELISVPIDTE-KGFFSLQNLQECLE 316 (502)
T ss_dssp GCEEEE--ECCCSSCCSHHHHHHH--HHHHTTCSEEEEEEET--TTHHHHHHHCTTSEEEEECCS-SSSCCGGGHHHHHH
T ss_pred CceEEE--EECCCCCCCHHHHHHH--HHHHhCcCeEEEEEcH--HHHHHHhhcCCeEEEeccccc-ccccchhhHHHHHH
Confidence 456777 5554 788888743 345433 333332222 122233322335555555322 23343 445555
Q ss_pred HHHcCCCCcEEEEeCCCCCC-CCCCCCHHHHHH-HHHHHHhcCCeeEEecc
Q 012628 222 DIKAAPGGSFILLHGCAHNP-TGIDPTPEQWEK-IADVIQEKNHIPFFDVA 270 (459)
Q Consensus 222 ~i~~~~~~~~~ii~~~p~NP-TG~~~s~~~l~~-i~~l~~~~~~~ii~Dea 270 (459)
.+.. ...+++ || +|.. +..++ +.+++++.+..+|.|..
T Consensus 317 ~~~~---~davvi-----GpGlg~~---~~~~~~~~~~l~~~~~pvVlDad 356 (502)
T 3rss_A 317 LSKD---VDVVAI-----GPGLGNN---EHVREFVNEFLKTLEKPAVIDAD 356 (502)
T ss_dssp HHTT---CSEEEE-----CTTCCCS---HHHHHHHHHHHHHCCSCEEECHH
T ss_pred Hhcc---CCEEEE-----eCCCCCC---HHHHHHHHHHHHhcCCCEEEeCc
Confidence 4443 344444 33 3333 33333 44467778999999975
No 311
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=31.24 E-value=3.1e+02 Score=25.10 Aligned_cols=117 Identities=10% Similarity=0.017 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCC--CEEEEcC--CCCcchH--HHhhhCCCCeeee
Q 012628 131 FNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG--AKVLISS--PTWGNHK--NIFNDARVPWSEY 204 (459)
Q Consensus 131 lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~g--d~Vlv~~--p~y~~~~--~~~~~~G~~v~~v 204 (459)
.++.|+++-... +.....++ |.|.++..... +......| -+|++.+ |.+.+.. ..+...|.++..+
T Consensus 107 a~~~I~~~~~~~----I~~g~~IL--Th~~S~tv~~~--l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli 178 (315)
T 3ecs_A 107 SRNKIADLCHTF----IKDGATIL--THAYSRVVLRV--LEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVV 178 (315)
T ss_dssp HHHHHHHHHGGG----CCTTEEEE--ECSCCHHHHHH--HHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHH----cCCCCEEE--EcCCcHHHHHH--HHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCCEEEE
Confidence 455666663322 23456667 77777655554 33334444 3677665 5554443 2334567777666
Q ss_pred eeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012628 205 RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD 268 (459)
Q Consensus 205 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D 268 (459)
+- ..+-..++. -.++++=..---..|.+.++----.++-+|+.+|+.+++=
T Consensus 179 ~D----------sa~~~~m~~---vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 179 LD----------AAVGYIMEK---ADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp CG----------GGHHHHGGG---CSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred eh----------hHHHHHHHh---CCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 42 222333333 4455542222222333333322235888889999988764
No 312
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=31.09 E-value=2.5e+02 Score=25.82 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=32.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC
Q 012628 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274 (459)
Q Consensus 238 p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~ 274 (459)
-.||.|-....+.+.++++.|+++|+-|+.|--|++.
T Consensus 49 w~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~ 85 (332)
T 1hjs_A 49 WVNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDT 85 (332)
T ss_dssp CSSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSS
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 4788888888899999999999999999999766544
No 313
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=31.08 E-value=1.2e+02 Score=27.01 Aligned_cols=95 Identities=18% Similarity=0.070 Sum_probs=48.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~ 230 (459)
..||++++-... .......|.+|++..-.-..... .++..|.++..+..+ --|.+.+++.++.. ..+.
T Consensus 29 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~i 102 (279)
T 3sju_A 29 VTGVSSGIGLAV-ARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCD-----VTSTDEVHAAVAAAVERFGPI 102 (279)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHCSC
T ss_pred EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 467777776641 12224478888876644322222 233446677776653 12556665555431 1123
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+....+.+. ..+.++++++.++
T Consensus 103 d~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (279)
T 3sju_A 103 GILVNSAGRNGGGETADLDDALWADVLDT 131 (279)
T ss_dssp CEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 35554443333332 2567778777654
No 314
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=30.95 E-value=1.4e+02 Score=26.59 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=48.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCc----------chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc-
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWG----------NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA- 225 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~----------~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~- 225 (459)
..|+++++-... .......|.+|++..-.-. .....++..|.++..+..+- -|.+.+++.++.
T Consensus 14 VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~ 87 (285)
T 3sc4_A 14 ISGGSRGIGLAI-AKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDI-----RDGDAVAAAVAKT 87 (285)
T ss_dssp EESCSSHHHHHH-HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCT-----TSHHHHHHHHHHH
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHH
Confidence 467777766642 1223457888877653322 11223344566777776631 255555555442
Q ss_pred --CCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 226 --APGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 226 --~~~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
...+.-+++.+....+.+. ..+.++|+++.++
T Consensus 88 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 123 (285)
T 3sc4_A 88 VEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGI 123 (285)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 1112335554443333332 3567888877654
No 315
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=30.89 E-value=1.7e+02 Score=25.66 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=45.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ 232 (459)
..|+++++-... .......|.+|++..-.-.......+ ..|.++..+..+-.+ .-+++.+.+.+.+...+.-+
T Consensus 25 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~id~ 101 (266)
T 4egf_A 25 ITGATKGIGADI-ARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE--PDAPAELARRAAEAFGGLDV 101 (266)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--TTHHHHHHHHHHHHHTSCSE
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence 467777776651 12224478888876544332222222 146677777663211 11333333333221112234
Q ss_pred EEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
++.+......+ ...+.++|++..++
T Consensus 102 lv~nAg~~~~~~~~~~~~~~~~~~~~~ 128 (266)
T 4egf_A 102 LVNNAGISHPQPVVDTDPQLFDATIAV 128 (266)
T ss_dssp EEEECCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHH
Confidence 55333322222 23567777777654
No 316
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.87 E-value=1.1e+02 Score=28.41 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+..++..-..+++.+-+. . ....+...++++. +.-+++ ..|. ..+.++.++|.+.|+++|+.+
T Consensus 55 ~~~~~~~ll~~~~vD~V~i~tp--~--~~H~~~~~~al~a---GkhV~~----EKPl--a~~~~e~~~l~~~a~~~g~~~ 121 (352)
T 3kux_A 55 VVSDPQMLFNDPSIDLIVIPTP--N--DTHFPLAQSALAA---GKHVVV----DKPF--TVTLSQANALKEHADDAGLLL 121 (352)
T ss_dssp EESCHHHHHHCSSCCEEEECSC--T--TTHHHHHHHHHHT---TCEEEE----CSSC--CSCHHHHHHHHHHHHHTTCCE
T ss_pred eECCHHHHhcCCCCCEEEEeCC--h--HHHHHHHHHHHHC---CCcEEE----ECCC--cCCHHHHHHHHHHHHHcCCeE
Confidence 3556777777666777776652 1 2346666777775 444444 4553 345688999999999999888
Q ss_pred EEec
Q 012628 266 FFDV 269 (459)
Q Consensus 266 i~De 269 (459)
.+--
T Consensus 122 ~v~~ 125 (352)
T 3kux_A 122 SVFH 125 (352)
T ss_dssp EECC
T ss_pred EEEe
Confidence 7743
No 317
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=30.82 E-value=89 Score=27.83 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=45.8
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCC----------------Ccch---HHHhhhCCCCeeeeeeecCCCCCCCHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT----------------WGNH---KNIFNDARVPWSEYRYYDPKTVGLDFE 217 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~----------------y~~~---~~~~~~~G~~v~~v~~~~~~~~~~d~e 217 (459)
..|+++++-... .......|.+|++.+-. -... ...++..|.++..+..+- -|.+
T Consensus 16 VTGas~gIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~ 89 (286)
T 3uve_A 16 VTGAARGQGRSH-AVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDV-----RDYD 89 (286)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCT-----TCHH
T ss_pred EeCCCchHHHHH-HHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCC-----CCHH
Confidence 467777766541 12234478888775322 0111 122234466676666531 2555
Q ss_pred HHHHHHHc---CCCCcEEEEeCCCCCCCCC---CCCHHHHHHHHHH
Q 012628 218 GMIADIKA---APGGSFILLHGCAHNPTGI---DPTPEQWEKIADV 257 (459)
Q Consensus 218 ~l~~~i~~---~~~~~~~ii~~~p~NPTG~---~~s~~~l~~i~~l 257 (459)
.+++.++. ...+.-+++.+....+.+. ..+.++|++..++
T Consensus 90 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 135 (286)
T 3uve_A 90 ALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDI 135 (286)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHH
Confidence 55555442 1112334554433323222 2467777777654
No 318
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=30.59 E-value=99 Score=27.34 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=47.7
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCC-CCcc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSP-TWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p-~y~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..|+++++-... .......|.+|++..- .-.. ....++..|.++..+..+- -|.+.+++.++. ...+
T Consensus 33 VTGas~gIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~d~~~v~~~~~~~~~~~g~ 106 (269)
T 4dmm_A 33 VTGASRGIGRAI-ALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADV-----SQESEVEALFAAVIERWGR 106 (269)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCT-----TSHHHHHHHHHHHHHHHSC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776641 1223447888877533 2111 2223345577777776631 255665555542 1112
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+. ..+.++|+++.++
T Consensus 107 id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 136 (269)
T 4dmm_A 107 LDVLVNNAGITRDTLLLRMKRDDWQSVLDL 136 (269)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 335554433333222 3567888877764
No 319
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=30.45 E-value=45 Score=32.30 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 86 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 114 (435)
T 1mxg_A 86 KEELVRLIQTAHAYGIKVIADVVINHRAG 114 (435)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccC
Confidence 49999999999999999999999876653
No 320
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=30.39 E-value=1.4e+02 Score=26.34 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=46.5
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHh----hhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CC
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~----~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~ 228 (459)
..|+++++-.. +.. +...|.+|++..-.-....... +..|.++..+..+ --|.+.+++.++.. ..
T Consensus 26 VTGas~gIG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-----l~~~~~v~~~~~~~~~~~g 98 (267)
T 1vl8_A 26 VTGGSRGLGFG--IAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCD-----VSNYEEVKKLLEAVKEKFG 98 (267)
T ss_dssp EETTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECC-----TTCHHHHHHHHHHHHHHHS
T ss_pred EECCCCHHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcC-----CCCHHHHHHHHHHHHHHcC
Confidence 46777777664 222 2347888877654322222222 2236666666552 12556665555421 01
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.-+++.+......+. ..+.++++++.++
T Consensus 99 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 129 (267)
T 1vl8_A 99 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEV 129 (267)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHH
Confidence 2335554433222222 2466777777654
No 321
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=30.36 E-value=1.2e+02 Score=27.07 Aligned_cols=62 Identities=10% Similarity=-0.102 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~ 224 (459)
..|+++++-... .......|.+|++.+-.-.......+..+.++..+..+- -|.+.+++.++
T Consensus 10 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~ 71 (281)
T 3zv4_A 10 ITGGASGLGRAL-VDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDV-----RSLQDQKRAAE 71 (281)
T ss_dssp EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCT-----TCHHHHHHHHH
T ss_pred EECCCcHHHHHH-HHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCC-----CCHHHHHHHHH
Confidence 467777776652 122344788888876554444555556677777776631 25555555544
No 322
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=30.24 E-value=39 Score=33.59 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-+|...+
T Consensus 79 ~~dfk~Lv~~aH~~Gi~VilD~V~NHts 106 (549)
T 4aie_A 79 MADMDELISKAKEHHIKIVMDLVVNHTS 106 (549)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECccCCc
Confidence 4999999999999999999999987765
No 323
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=30.19 E-value=1.3e+02 Score=26.09 Aligned_cols=95 Identities=12% Similarity=-0.001 Sum_probs=45.7
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCcEEE
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFIL 233 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~i 233 (459)
..|+++++-... .......|.+|++..-.-.......+..|.++..+..+- -|.+.+++.++. ...+.-++
T Consensus 10 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~iD~l 83 (254)
T 1hdc_A 10 ITGGARGLGAEA-ARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDV-----TIEEDWQRVVAYAREEFGSVDGL 83 (254)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCT-----TCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecC-----CCHHHHHHHHHHHHHHcCCCCEE
Confidence 467777776541 122234788887765432223333444455566665521 255666555542 10123355
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 234 i~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+....+.+. ..+.+++++..++
T Consensus 84 v~nAg~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T 1hdc_A 84 VNNAGISTGMFLETESVERFRKVVEI 109 (254)
T ss_dssp EECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHH
Confidence 54333222221 2466777766553
No 324
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=29.96 E-value=41 Score=32.95 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-++...+
T Consensus 97 ~~df~~lv~~~H~~Gi~VilD~V~NH~~ 124 (478)
T 2guy_A 97 ADDLKALSSALHERGMYLMVDVVANHMG 124 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccCC
Confidence 5999999999999999999999987665
No 325
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=29.93 E-value=41 Score=32.89 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 96 ~~df~~lv~~~h~~Gi~VilD~V~NH~~~ 124 (475)
T 2z1k_A 96 NEALRHLLEVAHAHGVRVILDGVFNHTGR 124 (475)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Confidence 49999999999999999999999887663
No 326
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=29.92 E-value=1.2e+02 Score=24.58 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=36.9
Q ss_pred HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012628 192 NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262 (459)
Q Consensus 192 ~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~ 262 (459)
..++..|.+++.+.. ...++.+.+++.+..+. ++.++.-.. ...+.++++++.+++.+
T Consensus 40 ~~l~~~G~eVi~lG~------~~p~e~lv~aa~~~~~d--iV~lS~~~~-----~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 40 RALRDAGFEVVYTGL------RQTPEQVAMAAVQEDVD--VIGVSILNG-----AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHTTCEEECCCS------BCCHHHHHHHHHHTTCS--EEEEEESSS-----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCEEEECCC------CCCHHHHHHHHHhcCCC--EEEEEeech-----hhHHHHHHHHHHHHhcC
Confidence 456778998887754 25778888888764333 333332221 23478888888888753
No 327
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Probab=29.92 E-value=3.7e+02 Score=25.58 Aligned_cols=62 Identities=18% Similarity=0.004 Sum_probs=31.3
Q ss_pred cccchhHHHHHHHHHHHhC-CCCEEEEcCCCCc------------c---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYF-PGAKVLISSPTWG------------N---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~-~gd~Vlv~~p~y~------------~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~ 220 (459)
..|++.++-.+.. ..... .|..|++..-.-. + ....++..|.++..+..+ --|.+.++
T Consensus 52 VTGas~GIG~AiA-~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~D-----vtd~~~v~ 125 (405)
T 3zu3_A 52 VIGASTGYGLAAR-ITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGD-----AFSDEIKQ 125 (405)
T ss_dssp EESCSSHHHHHHH-HHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESC-----TTSHHHHH
T ss_pred EeCcchHHHHHHH-HHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECC-----CCCHHHHH
Confidence 4666666666522 22344 5777766421110 0 122445678777777663 12555555
Q ss_pred HHHH
Q 012628 221 ADIK 224 (459)
Q Consensus 221 ~~i~ 224 (459)
+.++
T Consensus 126 ~~v~ 129 (405)
T 3zu3_A 126 LTID 129 (405)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 328
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=29.51 E-value=45 Score=33.21 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
.++++++++-|+++|+-||.|-++...+.+
T Consensus 92 ~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~ 121 (527)
T 1gcy_A 92 DAQLRQAASALGGAGVKVLYDVVPNHMNRG 121 (527)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeecCcCCC
Confidence 499999999999999999999998776643
No 329
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=29.39 E-value=1.5e+02 Score=25.73 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++.+-.-...... ++..+.++..+..+- -|.+.+++.++. ...+.
T Consensus 11 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~i 84 (257)
T 3imf_A 11 ITGGSSGMGKGM-ATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDV-----RNTDDIQKMIEQIDEKFGRI 84 (257)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777776651 122244788888765443322222 234466676666531 255555555442 11123
Q ss_pred EEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
-+++.+....+.+ ...+.++|++..++
T Consensus 85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T 3imf_A 85 DILINNAAGNFICPAEDLSVNGWNSVINI 113 (257)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 3555443322222 23567888877765
No 330
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=29.39 E-value=43 Score=32.94 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 81 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~ 109 (488)
T 1wza_A 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSE 109 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 49999999999999999999999877653
No 331
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=29.23 E-value=1.1e+02 Score=27.80 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=46.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCC----------Ccc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT----------WGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~----------y~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i 223 (459)
..||++++-... ...+...|.+|++.+-. -.. ....++..|.++..+..+ --|.+.+++.+
T Consensus 32 VTGas~GIG~ai-a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~ 105 (322)
T 3qlj_A 32 VTGAGGGIGRAH-ALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSN-----VADWDQAAGLI 105 (322)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCC-----TTSHHHHHHHH
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHH
Confidence 467777776652 12234478888876432 111 222334456666666552 12555555554
Q ss_pred HcC---CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 224 KAA---PGGSFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 224 ~~~---~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
+.. ..+.-+++.+......+ ...+.++++++.++
T Consensus 106 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 144 (322)
T 3qlj_A 106 QTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAV 144 (322)
T ss_dssp HHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 421 01223455333322222 13567777777664
No 332
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=29.16 E-value=2e+02 Score=25.36 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=47.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCC------------c---chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTW------------G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y------------~---~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
..|+++++-... .......|.+|++.+-.- . .....++..|.++..+..+- -|.+.+++
T Consensus 15 VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~ 88 (281)
T 3s55_A 15 ITGGARGMGRSH-AVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDV-----KDRAALES 88 (281)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHH
T ss_pred EeCCCchHHHHH-HHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCC-----CCHHHHHH
Confidence 467777776541 122244788887765320 0 11122344567777776631 25555555
Q ss_pred HHHcC---CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 222 DIKAA---PGGSFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 222 ~i~~~---~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
.++.. ..+.-+++.+....+.+ ...+.++|++..++
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 129 (281)
T 3s55_A 89 FVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGT 129 (281)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55421 01233555444333323 23577888877654
No 333
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=28.96 E-value=91 Score=27.62 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=44.7
Q ss_pred CCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012628 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA 255 (459)
Q Consensus 176 ~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~ 255 (459)
-|-.+++..-+.......++..|++++.+...+-.++..|++...+.+...++...++.- |-+.++++++++.
T Consensus 149 lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaE-------sGI~t~edv~~~~ 221 (251)
T 1i4n_A 149 LGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAE-------SGIKDPRELKDLR 221 (251)
T ss_dssp TTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEE-------SCCCCGGGHHHHT
T ss_pred cCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEe-------CCCCCHHHHHHHH
Confidence 477788877665554444332288888877655566778888777777665444444433 2233347766665
Q ss_pred H
Q 012628 256 D 256 (459)
Q Consensus 256 ~ 256 (459)
+
T Consensus 222 ~ 222 (251)
T 1i4n_A 222 G 222 (251)
T ss_dssp T
T ss_pred H
Confidence 4
No 334
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=28.94 E-value=1.8e+02 Score=25.32 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=48.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEc-CCCCcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLIS-SPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~-~p~y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~ 229 (459)
..||++++-... .......|.+|++. .-.-.... ..++..|.++..+..+- -|.+.+++.++.. ..+
T Consensus 9 VTGas~gIG~ai-a~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 82 (258)
T 3oid_A 9 VTGSSRGVGKAA-AIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANV-----GQPAKIKEMFQQIDETFGR 82 (258)
T ss_dssp ESSCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred EecCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776652 12234478887774 43322222 22334566777776631 2556665555431 112
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+. ..+.++|++..++
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (258)
T 3oid_A 83 LDVFVNNAASGVLRPVMELEETHWDWTMNI 112 (258)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 335554443333332 3567778777664
No 335
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=28.93 E-value=63 Score=29.88 Aligned_cols=17 Identities=0% Similarity=-0.334 Sum_probs=13.7
Q ss_pred hHHHhhhCCCCeeeeee
Q 012628 190 HKNIFNDARVPWSEYRY 206 (459)
Q Consensus 190 ~~~~~~~~G~~v~~v~~ 206 (459)
-...++.+|++++.++-
T Consensus 115 k~~~~~~~GA~V~~~~~ 131 (338)
T 1tzj_A 115 NIQMSRILGADVRLVPD 131 (338)
T ss_dssp HHHHHHHTTCEEEECCC
T ss_pred cHHHHHhCCCEEEEeCC
Confidence 56678899999998764
No 336
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=28.65 E-value=2e+02 Score=26.56 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=49.0
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCc----------chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWG----------NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~----------~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~ 226 (459)
..|+++++-... .......|.+|++..-.-. .....++..|.++..+..+- -|.+.+++.++..
T Consensus 50 VTGas~GIG~ai-a~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv-----~d~~~v~~~~~~~ 123 (346)
T 3kvo_A 50 ITGASRGIGKAI-ALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDV-----RDEQQISAAVEKA 123 (346)
T ss_dssp EETTTSHHHHHH-HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCT-----TCHHHHHHHHHHH
T ss_pred EeCCChHHHHHH-HHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccC-----CCHHHHHHHHHHH
Confidence 477777776652 2233457888777653322 12333455677777776631 2556666555431
Q ss_pred ---CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 227 ---PGGSFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 227 ---~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
..+.-+++.+......+ ...+.++++++.++
T Consensus 124 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~v 159 (346)
T 3kvo_A 124 IKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNV 159 (346)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 11233555443322222 23567777776553
No 337
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=28.61 E-value=1.3e+02 Score=26.33 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=47.8
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..||++++-.. +.. ....|.+|++..-.-...... +...|.++..+..+- -|.+.+.+.++. ...+
T Consensus 34 ITGas~gIG~~--la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~ 106 (262)
T 3rkr_A 34 VTGASRGIGAA--IARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDL-----SHSDAIAAFATGVLAAHGR 106 (262)
T ss_dssp ESSTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred EECCCChHHHH--HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecC-----CCHHHHHHHHHHHHHhcCC
Confidence 46777777665 222 244788888776543333222 334566666666531 255665555443 1112
Q ss_pred cEEEEeCCCC-CCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAH-NPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~-NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+... .+.+. ..+.++++++.++
T Consensus 107 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~v 137 (262)
T 3rkr_A 107 CDVLVNNAGVGWFGGPLHTMKPAEWDALIAV 137 (262)
T ss_dssp CSEEEECCCCCCCSSCGGGSCHHHHHHHHHH
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHH
Confidence 2345543332 23232 2566777776654
No 338
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=28.57 E-value=2.4e+02 Score=22.98 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhC---CCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCC
Q 012628 164 LRLAAALIERYF---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (459)
Q Consensus 164 ~~l~~~~~~~~~---~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~N 240 (459)
..++.-+++.+. .+..|+...|-+..|...+...|.....+=+-...+..--+..+|++++. ...-.++.-..
T Consensus 59 l~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrs---G~~~aVl~Wl~- 134 (161)
T 1oft_A 59 LTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL---GRSHTVVSWLE- 134 (161)
T ss_dssp HHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHT---TCEEEEEECCS-
T ss_pred HHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhc---CCccEEEECCC-
Confidence 333333444443 34566666777778999999999865443332122212236777888887 44433333322
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 241 PTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 241 PTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
-++..+.+++--.|++-+.+.
T Consensus 135 ----~l~~~~~RRLqlAAe~g~~~~ 155 (161)
T 1oft_A 135 ----PLSRAARKQLSRAAQLGQAQS 155 (161)
T ss_dssp ----SCCHHHHHHHHHHHHHTTCEE
T ss_pred ----cCChHHHHHHHHHHHhCCCeE
Confidence 267788888877677655543
No 339
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=28.54 E-value=38 Score=33.14 Aligned_cols=30 Identities=3% Similarity=0.085 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
.++++++++-|+++|+-||.|-++...+..
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (471)
T 1jae_A 74 ESAFTDMTRRCNDAGVRIYVDAVINHMTGM 103 (471)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCC
Confidence 499999999999999999999998776643
No 340
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=28.51 E-value=43 Score=32.84 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 97 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 125 (484)
T 2aaa_A 97 ADNLKSLSDALHARGMYLMVDVVPDHMGY 125 (484)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCB
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCcCC
Confidence 49999999999999999999999876654
No 341
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=28.39 E-value=33 Score=25.27 Aligned_cols=22 Identities=14% Similarity=-0.050 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCeeEEecc
Q 012628 249 EQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 249 ~~l~~i~~l~~~~~~~ii~Dea 270 (459)
.--++|.++|+++|+.++.|..
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCEEECHH
Confidence 6678899999999999999975
No 342
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=28.23 E-value=42 Score=32.32 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
+.++++++++-|+++|+-||.|-++...+.+
T Consensus 73 ~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (422)
T 1ua7_A 73 TEQEFKEMCAAAEEYGIKVIVDAVINHTTFD 103 (422)
T ss_dssp EHHHHHHHHHHHHTTTCEEEEEECCSBCCSC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccCcccCC
Confidence 3599999999999999999999998877643
No 343
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=28.19 E-value=1.1e+02 Score=27.06 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=47.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCC-------------CCcch---HHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSP-------------TWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p-------------~y~~~---~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~ 220 (459)
..|+++++-... .......|.+|++.+- .-... ...++..+.++..+..+- -|.+.++
T Consensus 16 VTGas~GIG~a~-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~ 89 (277)
T 3tsc_A 16 ITGAARGQGRAH-AVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDT-----RDFDRLR 89 (277)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHH
T ss_pred EECCccHHHHHH-HHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCC-----CCHHHHH
Confidence 467777766542 1223447888877532 11111 122334566777666531 2556666
Q ss_pred HHHHc---CCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 221 ADIKA---APGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 221 ~~i~~---~~~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.+++ ...+.-+++.+....+.+. ..+.++|++..++
T Consensus 90 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 3tsc_A 90 KVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDI 131 (277)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55543 1112335554443333332 3567788877764
No 344
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=28.13 E-value=48 Score=31.93 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-++...+
T Consensus 81 ~~d~~~lv~~ah~~Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 81 KEDFDSLLQSAKKKSIRVILDLTPNYRG 108 (424)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 4999999999999999999999987765
No 345
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=28.09 E-value=1.2e+02 Score=27.75 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=48.2
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+..++..-.++++.+-+. . ....+...++++. +.-+++ .-|-. .+.++.++|.++|+++|+.+
T Consensus 54 ~~~~~~~ll~~~~vD~V~i~tp--~--~~H~~~~~~al~~---GkhVl~----EKP~a--~~~~e~~~l~~~a~~~~~~~ 120 (334)
T 3ohs_X 54 AYGSYEELAKDPNVEVAYVGTQ--H--PQHKAAVMLCLAA---GKAVLC----EKPMG--VNAAEVREMVTEARSRGLFL 120 (334)
T ss_dssp EESSHHHHHHCTTCCEEEECCC--G--GGHHHHHHHHHHT---TCEEEE----ESSSS--SSHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHhcCCCCCEEEECCC--c--HHHHHHHHHHHhc---CCEEEE----ECCCC--CCHHHHHHHHHHHHHhCCEE
Confidence 3567777777666777777662 1 2346666777775 444444 34533 35699999999999999988
Q ss_pred EEecc
Q 012628 266 FFDVA 270 (459)
Q Consensus 266 i~Dea 270 (459)
.+--.
T Consensus 121 ~v~~~ 125 (334)
T 3ohs_X 121 MEAIW 125 (334)
T ss_dssp EEECG
T ss_pred EEEEh
Confidence 87654
No 346
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=27.88 E-value=39 Score=33.58 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-++...+
T Consensus 81 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 108 (515)
T 1hvx_A 81 KAQYLQAIQAAHAAGMQVYADVVFDHKG 108 (515)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCcc
Confidence 4999999999999999999999987765
No 347
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=27.80 E-value=42 Score=32.93 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-++...+
T Consensus 80 ~~df~~lv~~aH~~Gi~VilD~V~NH~~ 107 (480)
T 1ud2_A 80 KAQLERAIGSLKSNDINVYGDVVMNHKM 107 (480)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 4999999999999999999999987765
No 348
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=27.74 E-value=2.8e+02 Score=23.70 Aligned_cols=78 Identities=15% Similarity=-0.003 Sum_probs=41.6
Q ss_pred cCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 149 ~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
.+.+++ .||++++-... .......|.+|++..-.-.......+..+.++..+..+ --|.+.+.+.+++..
T Consensus 14 ~k~vlV---TGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~- 83 (249)
T 3f9i_A 14 GKTSLI---TGASSGIGSAI-ARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCN-----LANKEECSNLISKTS- 83 (249)
T ss_dssp TCEEEE---TTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECC-----TTSHHHHHHHHHTCS-
T ss_pred CCEEEE---ECCCChHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcC-----CCCHHHHHHHHHhcC-
Confidence 345555 67777766541 12224478888887654444444444444444444442 136777887777642
Q ss_pred CcEEEEeC
Q 012628 229 GSFILLHG 236 (459)
Q Consensus 229 ~~~~ii~~ 236 (459)
+.-+++++
T Consensus 84 ~id~li~~ 91 (249)
T 3f9i_A 84 NLDILVCN 91 (249)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 22345533
No 349
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=27.70 E-value=2.2e+02 Score=25.12 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-..... .++..|.++..+..+- -|.+.+++.++.. -.+.
T Consensus 37 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-----~d~~~v~~~~~~~~~~~g~i 110 (276)
T 3r1i_A 37 ITGASTGIGKKV-ALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDV-----TQPDQVRGMLDQMTGELGGI 110 (276)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777776651 12224478888776544333322 2334566777776531 2556665555421 0122
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+....+.+. ..+.++|+++.++
T Consensus 111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 139 (276)
T 3r1i_A 111 DIAVCNAGIVSVQAMLDMPLEEFQRIQDT 139 (276)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 34554433322222 3467778777664
No 350
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=27.57 E-value=84 Score=30.58 Aligned_cols=58 Identities=14% Similarity=-0.010 Sum_probs=39.0
Q ss_pred eeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 203 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
.+|+. -++|.+|.-++.++... + ...++++.. .++.++++++.+.|++.|+-+++|--
T Consensus 108 ~lPvL-rKDFI~d~~Qi~ea~~~-G-AD~ILLi~a-------~l~~~~l~~l~~~a~~lgm~~LvEvh 165 (452)
T 1pii_A 108 PQPIL-CKDFIIDPYQIYLARYY-Q-ADACLLMLS-------VLDDDQYRQLAAVAHSLEMGVLTEVS 165 (452)
T ss_dssp CSCEE-EESCCCSHHHHHHHHHT-T-CSEEEEETT-------TCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeE-EEeccCCHHHHHHHHHc-C-CCEEEEEcc-------cCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34443 34588888877775443 2 334444433 46678999999999999999998854
No 351
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=27.52 E-value=1.4e+02 Score=27.65 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=48.5
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+..++....++++.+-+. . ....+...++++. ..-+++ ..|.+ .+.++.++|.+.|+++|+.+
T Consensus 54 ~~~~~~~~l~~~~~D~V~i~tp--~--~~h~~~~~~al~~---gk~vl~----EKP~~--~~~~~~~~l~~~a~~~~~~~ 120 (354)
T 3db2_A 54 GDATMEALLAREDVEMVIITVP--N--DKHAEVIEQCARS---GKHIYV----EKPIS--VSLDHAQRIDQVIKETGVKF 120 (354)
T ss_dssp CCSSHHHHHHCSSCCEEEECSC--T--TSHHHHHHHHHHT---TCEEEE----ESSSC--SSHHHHHHHHHHHHHHCCCE
T ss_pred CcCCHHHHhcCCCCCEEEEeCC--h--HHHHHHHHHHHHc---CCEEEE----ccCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 4666777776666777776652 1 2345666777775 444444 34533 45689999999999999988
Q ss_pred EEeccC
Q 012628 266 FFDVAY 271 (459)
Q Consensus 266 i~Deay 271 (459)
.+...+
T Consensus 121 ~v~~~~ 126 (354)
T 3db2_A 121 LCGHSS 126 (354)
T ss_dssp EEECGG
T ss_pred EEeech
Confidence 887653
No 352
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=27.47 E-value=66 Score=32.48 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
+.++++++++-|+++|+-||.|-++...+.
T Consensus 217 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 246 (583)
T 1ea9_C 217 DKDTLKKLVDLCHERGIRVLLDAVFNHSGR 246 (583)
T ss_dssp CHHHHHHHHHHHTTTTCEEEEECCCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCCC
Confidence 469999999999999999999999887764
No 353
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=27.44 E-value=2e+02 Score=24.95 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=45.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHhhh---C-CCCeeeeeeecCCCCCCCHHHHHHHHHc---CCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFND---A-RVPWSEYRYYDPKTVGLDFEGMIADIKA---APG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~---~-G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~ 228 (459)
..|+++++-... .......|.+|++..-.-.. .....+. . |.++..+..+ --|.+.+++.++. ...
T Consensus 9 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g 82 (260)
T 1x1t_A 9 VTGSTSGIGLGI-ATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGAD-----LSKGEAVRGLVDNAVRQMG 82 (260)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCC-----TTSHHHHHHHHHHHHHHHS
T ss_pred EeCCCcHHHHHH-HHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECC-----CCCHHHHHHHHHHHHHhcC
Confidence 467777776541 12223478888876544322 2222221 1 5566666542 1255666555542 001
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.-+++.+....+.+. ..+.+++++..++
T Consensus 83 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 113 (260)
T 1x1t_A 83 RIDILVNNAGIQHTALIEDFPTEKWDAILAL 113 (260)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 2235554333222221 2466777776653
No 354
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=27.30 E-value=2e+02 Score=26.00 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=47.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCC-------C-----cch---HHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT-------W-----GNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~-------y-----~~~---~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
..|+++++-... ...+...|.+|++.+-. + ... ...++..|.++..+..+- -|.+.+++
T Consensus 51 VTGas~GIG~ai-a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~ 124 (317)
T 3oec_A 51 ITGAARGQGRTH-AVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADV-----RDLASLQA 124 (317)
T ss_dssp ESSCSSHHHHHH-HHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHH
T ss_pred EeCCCcHHHHHH-HHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCC-----CCHHHHHH
Confidence 467777776652 12234478888775322 1 011 122334577777776631 25566555
Q ss_pred HHHcC---CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 222 DIKAA---PGGSFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 222 ~i~~~---~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
.++.. -.+.-+++.+....+.+ ...+.++|+++.++
T Consensus 125 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~v 165 (317)
T 3oec_A 125 VVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQT 165 (317)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55421 01233555443333222 24577888877764
No 355
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=27.29 E-value=41 Score=33.05 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-++...+
T Consensus 78 ~~df~~lv~~aH~~Gi~VilD~V~NH~~ 105 (483)
T 3bh4_A 78 KSELQDAIGSLHSRNVQVYGDVVLNHKA 105 (483)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 4999999999999999999999987765
No 356
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=27.27 E-value=3.8e+02 Score=24.94 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=53.0
Q ss_pred cCceEEeecccchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc--
Q 012628 149 EQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA-- 225 (459)
Q Consensus 149 ~~~i~~~~t~ggt~a~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~-- 225 (459)
+..++.+....|+|=..++..+...+ ..|..|+..+.........++..|.....+.+..+ .+.+.+.+.+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~----~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQP----DNGEQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECC----SSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecC----CcHHHHHHHHHHHH
Confidence 45565544555555555554444333 24555554443332222345566665443333222 144555444432
Q ss_pred CCCCcEEEEeCCCCCCCC-CCCC---------------HHHHHHHHHHHHhcCCeeEE
Q 012628 226 APGGSFILLHGCAHNPTG-IDPT---------------PEQWEKIADVIQEKNHIPFF 267 (459)
Q Consensus 226 ~~~~~~~ii~~~p~NPTG-~~~s---------------~~~l~~i~~l~~~~~~~ii~ 267 (459)
......+|++.+...-.. .-+. .+.+.+|..+++++++.+|+
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~ 206 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIF 206 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 012344566555544332 1110 12355566667888876654
No 357
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=27.21 E-value=2e+02 Score=25.33 Aligned_cols=98 Identities=8% Similarity=-0.050 Sum_probs=51.2
Q ss_pred ceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCCc--chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---
Q 012628 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA--- 225 (459)
Q Consensus 151 ~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~--~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~--- 225 (459)
.+++ ..|++.++-.+. .......|-.|++..-.-. .....+...|.++..++.+- -|.+++++.+++
T Consensus 8 Kval--VTGas~GIG~ai-a~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 8 KVVI--VTGGASGIGGAI-SMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVEL-----QDDAQCRDAVAQTIA 79 (258)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CEEE--EeCCCCHHHHHH-HHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeec-----CCHHHHHHHHHHHHH
Confidence 4555 567777776652 1223447877777553222 12233445577777777631 144554444432
Q ss_pred -CCCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHH
Q 012628 226 -APGGSFILLHGCA-HNPTGIDPTPEQWEKIADV 257 (459)
Q Consensus 226 -~~~~~~~ii~~~p-~NPTG~~~s~~~l~~i~~l 257 (459)
.. +--+++.+.. +.+...-.+.++|+++.++
T Consensus 80 ~~G-~iDiLVNnAGi~~~~~~~~~~e~~~~~~~v 112 (258)
T 4gkb_A 80 TFG-RLDGLVNNAGVNDGIGLDAGRDAFVASLER 112 (258)
T ss_dssp HHS-CCCEEEECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HhC-CCCEEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 22 2334443332 3334456778888888765
No 358
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=27.19 E-value=31 Score=25.65 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCeeEEecc
Q 012628 249 EQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 249 ~~l~~i~~l~~~~~~~ii~Dea 270 (459)
+--++|.++|+++|+.++.|..
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCeEEECHH
Confidence 6678899999999999999975
No 359
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=27.07 E-value=2e+02 Score=25.44 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=46.8
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHh---hh-CCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIF---ND-ARVPWSEYRYYDPKTVGLDFEGMIADIKA---APG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~---~~-~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~ 228 (459)
..||++++-... .......|.+|++..-.- ....... +. .+.++..+..+ --|.+.+++.++. .-.
T Consensus 30 VTGas~GIG~~i-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g 103 (281)
T 3v2h_A 30 ITGSTSGIGLAI-ARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPAD-----MTKPSEIADMMAMVADRFG 103 (281)
T ss_dssp EETCSSHHHHHH-HHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCC-----TTCHHHHHHHHHHHHHHTS
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCC-----CCCHHHHHHHHHHHHHHCC
Confidence 467777766641 122345788888765422 1122221 22 25566666552 1255666555542 111
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.-+++.+....+.+. ..+.++|+++.++
T Consensus 104 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 134 (281)
T 3v2h_A 104 GADILVNNAGVQFVEKIEDFPVEQWDRIIAV 134 (281)
T ss_dssp SCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 2335554443333332 2467788877764
No 360
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=27.03 E-value=3.1e+02 Score=23.78 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=48.1
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCc---ch---HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWG---NH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~---~~---~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~ 227 (459)
..||++++-... .......|.+|++..-.-. .. ...++..|.++..+..+- -|.+.+++.++. ..
T Consensus 16 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~ 89 (262)
T 3ksu_A 16 IAGGIKNLGALT-AKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDL-----SNEEEVAKLFDFAEKEF 89 (262)
T ss_dssp EETCSSHHHHHH-HHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCC-----CSHHHHHHHHHHHHHHH
T ss_pred EECCCchHHHHH-HHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHc
Confidence 467777776652 1223457888887532211 11 222334466777776631 255666555542 11
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 228 ~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.+.-+++.+..-.+.+. ..+.++|+++.++
T Consensus 90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 121 (262)
T 3ksu_A 90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTI 121 (262)
T ss_dssp CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 13445554433333332 3567778877764
No 361
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=26.84 E-value=53 Score=33.24 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 222 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 250 (588)
T 1j0h_A 222 KETLKTLIDRCHEKGIRVMLDAVFNHCGY 250 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcCcc
Confidence 59999999999999999999999887764
No 362
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=26.58 E-value=45 Score=32.73 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-++...+
T Consensus 82 ~~df~~Lv~~aH~~Gi~VilD~V~NH~~ 109 (485)
T 1wpc_A 82 RSQLQAAVTSLKNNGIQVYGDVVMNHKG 109 (485)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccC
Confidence 4999999999999999999999987664
No 363
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=26.49 E-value=1.2e+02 Score=26.79 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=47.9
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcC-CCCcc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISS-PTWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~-p~y~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..|+++++-... .......|.+|++.. ..-.. ....++..|.++..+..+- -|.+.+++.+++ ...+
T Consensus 36 VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~ 109 (271)
T 3v2g_A 36 VTGGSRGIGAAI-AKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADN-----RDAEAIEQAIRETVEALGG 109 (271)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776641 122244788887752 22111 2223345577777776631 256666655543 1112
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+......+. ..+.++|+++.++
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 139 (271)
T 3v2g_A 110 LDILVNSAGIWHSAPLEETTVADFDEVMAV 139 (271)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 335554333222222 3467778877764
No 364
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=26.41 E-value=78 Score=19.85 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.3
Q ss_pred cEEEccCChhhHHHHHHHHHHHHhhc
Q 012628 433 RISLAGLSLAKCEYLADAIIDSYHNV 458 (459)
Q Consensus 433 Ris~~~~~~e~i~~~~~~l~~~~~~~ 458 (459)
|||++.-+..+-+.+...+.+++.++
T Consensus 5 risitartkkeaekfaailikvfael 30 (62)
T 2gjh_A 5 RISITARTKKEAEKFAAILIKVFAEL 30 (62)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecchhHHHHHHHHHHHHHHHh
Confidence 78888778888899988888887664
No 365
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=26.40 E-value=1.5e+02 Score=25.61 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCC-cc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTW-GN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y-~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..|+++++-... .......|.+|++..-.- .. ....++..|.++..+..+- -|.+.+++.+++ ...+
T Consensus 9 VTGas~gIG~~i-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~ 82 (246)
T 3osu_A 9 VTGASRGIGRSI-ALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANV-----ADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776651 122345788887643221 11 2223345577777776631 255666555542 1112
Q ss_pred cEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+ ...+.++|+++.++
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (246)
T 3osu_A 83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDT 112 (246)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 33555444333322 23577888877664
No 366
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=26.37 E-value=1.8e+02 Score=25.13 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=46.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-...... ++..|.++..+..+- -|.+.+++.++.. ..+.
T Consensus 12 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~i 85 (247)
T 2jah_A 12 ITGASSGIGEAT-ARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDV-----ADRQGVDAAVASTVEALGGL 85 (247)
T ss_dssp EESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777776651 122234787887764332222222 223466666666531 2556665555421 0122
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+....+.+. ..+.++++++.++
T Consensus 86 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 114 (247)
T 2jah_A 86 DILVNNAGIMLLGPVEDADTTDWTRMIDT 114 (247)
T ss_dssp SEEEECCCCCCCCCSTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 34554433333332 3467777777654
No 367
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=26.27 E-value=1.7e+02 Score=25.71 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-..... .++..|.++..+..+- -|.+.+++.++. ...+.
T Consensus 33 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~i 106 (270)
T 3ftp_A 33 VTGASRGIGRAI-ALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNV-----NDATAVDALVESTLKEFGAL 106 (270)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777776642 12224478888876644322222 2334466666666521 255665555542 11123
Q ss_pred EEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
-+++.+....+.+ ...+.++|+++.++
T Consensus 107 D~lvnnAg~~~~~~~~~~~~~~~~~~~~v 135 (270)
T 3ftp_A 107 NVLVNNAGITQDQLAMRMKDDEWDAVIDT 135 (270)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 3555443332222 23567888877765
No 368
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=26.24 E-value=53 Score=31.09 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcCCeeEEecc
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
.++.+++.++|+++|+.+.+..-
T Consensus 105 ~~ea~~l~~~A~~~g~~~~v~~~ 127 (372)
T 4gmf_A 105 PDDISSLQTLAQEQGCCYWINTF 127 (372)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHHHHHHHcCCEEEEcCc
Confidence 35555555555555555555443
No 369
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=26.20 E-value=2e+02 Score=25.12 Aligned_cols=95 Identities=17% Similarity=0.098 Sum_probs=46.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhh---h-CCC-CeeeeeeecCCCCCCCHHHHHHHHHc---CCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN---D-ARV-PWSEYRYYDPKTVGLDFEGMIADIKA---APG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~---~-~G~-~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~ 228 (459)
..|+++++-... .......|.+|++..-.-.......+ . .+. ++..+..+- -|.+.+++.++. ...
T Consensus 13 VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g 86 (265)
T 3lf2_A 13 VTGGSSGIGLAT-VELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDV-----LDALQVRAFAEACERTLG 86 (265)
T ss_dssp EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHC
T ss_pred EeCCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCC-----CCHHHHHHHHHHHHHHcC
Confidence 466777766541 12224478888876644332222222 1 333 366665521 245555554432 111
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.-+++.+....+.+. ..+.++|++..++
T Consensus 87 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 117 (265)
T 3lf2_A 87 CASILVNNAGQGRVSTFAETTDEAWSEELQL 117 (265)
T ss_dssp SCSEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 2235554443333332 4677888887765
No 370
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=26.20 E-value=1.8e+02 Score=26.55 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CCeeEEeccC
Q 012628 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK-NHIPFFDVAY 271 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~-~~~ii~Deay 271 (459)
.+.++++++. ..+.+++-++ |. +.++.+++.+.|+++ |+.+|-+.+.
T Consensus 85 ~~~~~e~i~~---Gi~~iv~~t~----G~--~~~~~~~l~~~a~~~~gi~liGPnc~ 132 (305)
T 2fp4_A 85 AAAINEAIDA---EVPLVVCITE----GI--PQQDMVRVKHRLLRQGKTRLIGPNCP 132 (305)
T ss_dssp HHHHHHHHHT---TCSEEEECCC----CC--CHHHHHHHHHHHTTCSSCEEECSSSC
T ss_pred HHHHHHHHHC---CCCEEEEECC----CC--ChHHHHHHHHHHHhcCCcEEEeCCCC
Confidence 4556666665 3334332222 43 346677999999999 9999888883
No 371
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=26.18 E-value=49 Score=35.63 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
.++++++++-|+++|+-||.|-+|...+.+
T Consensus 531 ~~dfk~LV~~aH~~GI~VILDvV~NHt~~~ 560 (921)
T 2wan_A 531 ITELKQLIQSLHQQRIGVNMDVVYNHTFDV 560 (921)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCSCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcccccccc
Confidence 499999999999999999999999887754
No 372
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=26.17 E-value=1.9e+02 Score=25.29 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=50.7
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
..|++.++-.+. .......|-+|++.+-.-. ......+.++..+..+ --|.+.+++.+++... .-+++.|
T Consensus 16 VTGas~GIG~ai-a~~la~~Ga~Vv~~~~~~~---~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~g~-iDiLVNN 85 (242)
T 4b79_A 16 VTGGSSGIGAAI-AMQFAELGAEVVALGLDAD---GVHAPRHPRIRREELD-----ITDSQRLQRLFEALPR-LDVLVNN 85 (242)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESSTT---STTSCCCTTEEEEECC-----TTCHHHHHHHHHHCSC-CSEEEEC
T ss_pred EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHH---HHhhhhcCCeEEEEec-----CCCHHHHHHHHHhcCC-CCEEEEC
Confidence 466777776652 1223458888888653321 1122344566666552 1266778877776543 3345533
Q ss_pred CCCCCCCCCCCHHHHHHHHHH
Q 012628 237 CAHNPTGIDPTPEQWEKIADV 257 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l 257 (459)
..-+.....++.++|+++.++
T Consensus 86 AGi~~~~~~~~~~~w~~~~~v 106 (242)
T 4b79_A 86 AGISRDREEYDLATFERVLRL 106 (242)
T ss_dssp CCCCCGGGGGSHHHHHHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHHH
Confidence 333333445677888888876
No 373
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=26.06 E-value=1.9e+02 Score=25.41 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=45.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... ...+...|.+|++..-.-..... .++..|.++..+..+- -|.+.+++.++. .-.+.
T Consensus 27 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~i 100 (277)
T 2rhc_B 27 VTGATSGIGLEI-ARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDV-----RSVPEIEALVAAVVERYGPV 100 (277)
T ss_dssp EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHTCSC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCC-----CCHHHHHHHHHHHHHHhCCC
Confidence 467777776541 12223478788776433222222 2233466666666521 255666555542 11122
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+....+.+. ..+.++|+++.++
T Consensus 101 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 129 (277)
T 2rhc_B 101 DVLVNNAGRPGGGATAELADELWLDVVET 129 (277)
T ss_dssp SEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 34554333222221 2566777777654
No 374
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=26.05 E-value=34 Score=25.53 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCeeEEecc
Q 012628 249 EQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 249 ~~l~~i~~l~~~~~~~ii~Dea 270 (459)
.--++|.++|+++|+.++.|..
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 27 QRALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCeecCHH
Confidence 6678899999999999999975
No 375
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=26.02 E-value=1.4e+02 Score=26.79 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=48.7
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-...... ++..|.++..+..+- -|.+.+++.++.. ..+.
T Consensus 36 VTGas~gIG~~l-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~i 109 (301)
T 3tjr_A 36 VTGGASGIGLAT-ATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDV-----RHLDEMVRLADEAFRLLGGV 109 (301)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSSC
T ss_pred EeCCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccC-----CCHHHHHHHHHHHHHhCCCC
Confidence 467777776651 122244788888766443333322 334566777776631 2556666555421 0122
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+..-.+.|. ..+.++++++.++
T Consensus 110 d~lvnnAg~~~~~~~~~~~~~~~~~~~~v 138 (301)
T 3tjr_A 110 DVVFSNAGIVVAGPLAQMNHDDWRWVIDI 138 (301)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHh
Confidence 34553333222222 3567777777654
No 376
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=25.91 E-value=1.8e+02 Score=25.58 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=46.0
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCC-------C-----cch---HHHhhhCCCCeeeeeeecCCCCCCCHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT-------W-----GNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~-------y-----~~~---~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~ 221 (459)
..|+++++-... ...+...|.+|++.+-. | ... ...++..|.++..+..+- -|.+.+++
T Consensus 18 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~ 91 (278)
T 3sx2_A 18 ITGAARGQGRAH-AVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADV-----RDRESLSA 91 (278)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCT-----TCHHHHHH
T ss_pred EECCCChHHHHH-HHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCC-----CCHHHHHH
Confidence 467777776541 12234478888775422 0 111 122234466777776631 25566665
Q ss_pred HHHc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012628 222 DIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (459)
Q Consensus 222 ~i~~---~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l 257 (459)
.++. ...+.-+++.+....+.+. +.++++++.++
T Consensus 92 ~~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~~ 128 (278)
T 3sx2_A 92 ALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVIDV 128 (278)
T ss_dssp HHHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHHH
Confidence 5542 1112335554443333332 46777777654
No 377
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=25.82 E-value=43 Score=32.94 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 102 ~~df~~Lv~~aH~~Gi~VilD~V~NH~s~ 130 (488)
T 2wc7_A 102 NEAFKELLDAAHQRNIKVVLDGVFNHSSR 130 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcCCC
Confidence 39999999999999999999999877653
No 378
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=25.59 E-value=2.1e+02 Score=24.66 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=46.1
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-..... .++..|.++..++.+ --|.+.+++.++. ...+.
T Consensus 7 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 7 VTGAGQGIGKAI-ALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVD-----VSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC-----TTSHHHHHHHHHHHHHHTTCC
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEec-----CCCHHHHHHHHHHHHHHhCCC
Confidence 367777766541 12223478888776533222222 222346666666652 1255666655542 11123
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+....+.+. ..+.++++++.++
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 109 (256)
T 1geg_A 81 DVIVNNAGVAPSTPIESITPEIVDKVYNI 109 (256)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 35554433333222 2466777777654
No 379
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=25.53 E-value=86 Score=28.36 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=31.4
Q ss_pred CHHHHHHHHHcCCCCcEE-EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 215 DFEGMIADIKAAPGGSFI-LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 215 d~e~l~~~i~~~~~~~~~-ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
-.+.++++++. ...+ ++++ +|. +.++.+++.+.|+++|+.++-..+
T Consensus 77 ~~~~~~ea~~~---Gi~~iVi~t-----~G~--~~~~~~~l~~~A~~~gv~liGPNc 123 (288)
T 2nu8_A 77 CKDSILEAIDA---GIKLIITIT-----EGI--PTLDMLTVKVKLDEAGVRMIGPNT 123 (288)
T ss_dssp HHHHHHHHHHT---TCSEEEECC-----CCC--CHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHHHHHC---CCCEEEEEC-----CCC--CHHHHHHHHHHHHHcCCEEEecCC
Confidence 45667777765 3333 4332 243 457788999999999998886776
No 380
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=25.50 E-value=3e+02 Score=24.17 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=46.8
Q ss_pred cccchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..||++++-.. +... ...|.+|++..-.-..... .++..|.++..+..+ --|.+.+++.++. ...+
T Consensus 49 ITGasggIG~~--la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-----l~d~~~v~~~~~~~~~~~~~ 121 (285)
T 2c07_A 49 VTGAGRGIGRE--IAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGD-----VSKKEEISEVINKILTEHKN 121 (285)
T ss_dssp EESTTSHHHHH--HHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECC-----TTCHHHHHHHHHHHHHHCSC
T ss_pred EECCCcHHHHH--HHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECC-----CCCHHHHHHHHHHHHHhcCC
Confidence 46777777665 3333 4578888775422112222 223346666666653 1256666665542 1112
Q ss_pred cEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+ ...+.+++++..++
T Consensus 122 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 151 (285)
T 2c07_A 122 VDILVNNAGITRDNLFLRMKNDEWEDVLRT 151 (285)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 33555443322222 23466777776654
No 381
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=25.28 E-value=1.2e+02 Score=26.75 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=46.3
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCC--------C-----cc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT--------W-----GN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~--------y-----~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~ 220 (459)
..|+++++-... .......|.+|++.+-. | .. ....++..|.++..+..+- -|.+.++
T Consensus 20 VTGas~gIG~a~-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~ 93 (280)
T 3pgx_A 20 ITGAARGQGRSH-AVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDV-----RDDAALR 93 (280)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCT-----TCHHHHH
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCC-----CCHHHHH
Confidence 467777776641 12234478888875421 1 11 1222334566776666531 2555555
Q ss_pred HHHHc---CCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 221 ADIKA---APGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 221 ~~i~~---~~~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.++. ...+.-+++.+....+.+. ..+.++|+++.++
T Consensus 94 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 135 (280)
T 3pgx_A 94 ELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGV 135 (280)
T ss_dssp HHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhh
Confidence 55442 1112335554333332222 2467777777654
No 382
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=25.26 E-value=1.5e+02 Score=25.95 Aligned_cols=95 Identities=11% Similarity=-0.035 Sum_probs=47.7
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-..... .++..|.++..+..+- -|.+.+++.++. ...+.
T Consensus 16 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~i 89 (264)
T 3ucx_A 16 ISGVGPALGTTL-ARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDI-----TDDAQVAHLVDETMKAYGRV 89 (264)
T ss_dssp EESCCTTHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHTSCC
T ss_pred EECCCcHHHHHH-HHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHHHcCCC
Confidence 456666665541 12224478888887654332222 2334566777776631 255655555442 11123
Q ss_pred EEEEeCCCC-CCCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAH-NPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~-NPTG~--~~s~~~l~~i~~l 257 (459)
-+++.+... .+.+. ..+.++|++..++
T Consensus 90 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 119 (264)
T 3ucx_A 90 DVVINNAFRVPSMKPFANTTFEHMRDAIEL 119 (264)
T ss_dssp SEEEECCCSCCCCCCGGGCCHHHHHHHHHH
T ss_pred cEEEECCCCCCCCCCchhCCHHHHHHHHHH
Confidence 355543322 12222 3567778877765
No 383
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=25.25 E-value=1.5e+02 Score=26.02 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=45.4
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 232 (459)
..|+++++-.. +.. ....|.+|++..-.-.......+..+.++..+..+ --|.+.+++.++.. ..+.-+
T Consensus 11 ITGas~gIG~a--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~iD~ 83 (263)
T 2a4k_A 11 VTGAASGIGRA--ALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVAD-----VSDPKAVEAVFAEALEEFGRLHG 83 (263)
T ss_dssp EESTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCE
T ss_pred EECCCCHHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcC-----CCCHHHHHHHHHHHHHHcCCCcE
Confidence 46777777665 222 23478888776543333334444444556555552 12556665555431 012235
Q ss_pred EEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
++.+....+.+ ...+.++++++.++
T Consensus 84 lvnnAg~~~~~~~~~~~~~~~~~~~~~ 110 (263)
T 2a4k_A 84 VAHFAGVAHSALSWNLPLEAWEKVLRV 110 (263)
T ss_dssp EEEGGGGTTTTC----CHHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55443322222 22456777766554
No 384
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=25.22 E-value=1.6e+02 Score=27.12 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=46.6
Q ss_pred CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 187 y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
|..+..++..-..+++.+-+. . ....+...++++. ..-+++ .-|.. .+.++.++|.++|+++|+.+.
T Consensus 54 ~~~~~~ll~~~~~D~V~i~tp--~--~~h~~~~~~al~a---Gk~Vl~----EKP~a--~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 54 TADLNELLTDPEIELITICTP--A--HTHYDLAKQAILA---GKSVIV----EKPFC--DTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp ESCTHHHHSCTTCCEEEECSC--G--GGHHHHHHHHHHT---TCEEEE----CSCSC--SSHHHHHHHHHHHHHTTCCEE
T ss_pred ECCHHHHhcCCCCCEEEEeCC--c--HHHHHHHHHHHHc---CCEEEE----ECCCc--CCHHHHHHHHHHHHHcCCeEE
Confidence 456677776666677776652 1 2356666777775 444444 44533 456999999999999999887
Q ss_pred Eecc
Q 012628 267 FDVA 270 (459)
Q Consensus 267 ~Dea 270 (459)
+.-.
T Consensus 121 v~~~ 124 (349)
T 3i23_A 121 PYQN 124 (349)
T ss_dssp ECCG
T ss_pred EEec
Confidence 6443
No 385
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=25.14 E-value=1.8e+02 Score=27.11 Aligned_cols=72 Identities=10% Similarity=-0.079 Sum_probs=41.7
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+..++..-..+++.+-+. . ....+...++++. +.-+++ .-|.+. +.++.++|.++|+++|+.+
T Consensus 71 ~~~~~~~ll~~~~iD~V~i~tp--~--~~h~~~~~~al~~---Gk~V~~----EKP~a~--~~~~~~~l~~~a~~~~~~~ 137 (383)
T 3oqb_A 71 WTTDLDAALADKNDTMFFDAAT--T--QARPGLLTQAINA---GKHVYC----EKPIAT--NFEEALEVVKLANSKGVKH 137 (383)
T ss_dssp EESCHHHHHHCSSCCEEEECSC--S--SSSHHHHHHHHTT---TCEEEE----CSCSCS--SHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHhcCCCCCEEEECCC--c--hHHHHHHHHHHHC---CCeEEE----cCCCCC--CHHHHHHHHHHHHHcCCeE
Confidence 3455666666555565555442 1 2345666666664 333443 345433 4578888888888888776
Q ss_pred EEecc
Q 012628 266 FFDVA 270 (459)
Q Consensus 266 i~Dea 270 (459)
.+-..
T Consensus 138 ~v~~~ 142 (383)
T 3oqb_A 138 GTVQD 142 (383)
T ss_dssp EECCG
T ss_pred EEEec
Confidence 66544
No 386
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=25.05 E-value=30 Score=26.82 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 243 GIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 243 G~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
|. ++.+.++.|.+.++.++++++.|.=
T Consensus 34 Gs-i~~~~l~~I~~~~~~r~VIi~TD~D 60 (119)
T 2fcj_A 34 GT-ISDARLEELADELEGYDVYLLADAD 60 (119)
T ss_dssp SC-CCHHHHHHHHHHTTTSEEEEECCSS
T ss_pred Cc-cCHHHHHHHHHHhcCCCEEEEECCC
Confidence 44 7889999999999889999999954
No 387
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=25.02 E-value=64 Score=32.61 Aligned_cols=30 Identities=7% Similarity=0.197 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
+.++++++++-|+++|+-||.|-++...+.
T Consensus 218 t~~dfk~lv~~~H~~Gi~VilD~V~NH~~~ 247 (585)
T 1wzl_A 218 DLPTFRRLVDEAHRRGIKIILDAVFNHAGD 247 (585)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEcCCcCCC
Confidence 359999999999999999999999887764
No 388
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=24.95 E-value=2.8e+02 Score=23.21 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=23.1
Q ss_pred ccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeee
Q 012628 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY 206 (459)
Q Consensus 158 ~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~ 206 (459)
.+-.+++..+ ... ..|..|++...+ ...-+-+..+..|+.+++
T Consensus 36 ~~l~~~v~~a---~~~-~~~~dVIISRGg--ta~~lr~~~~iPVV~I~~ 78 (196)
T 2q5c_A 36 ASLTRASKIA---FGL-QDEVDAIISRGA--TSDYIKKSVSIPSISIKV 78 (196)
T ss_dssp CCHHHHHHHH---HHH-TTTCSEEEEEHH--HHHHHHTTCSSCEEEECC
T ss_pred CCHHHHHHHH---HHh-cCCCeEEEECCh--HHHHHHHhCCCCEEEEcC
Confidence 3345566555 223 455557776644 222222345677777776
No 389
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=24.88 E-value=1.6e+02 Score=27.65 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=6.4
Q ss_pred CEEEEcCCCCc
Q 012628 178 AKVLISSPTWG 188 (459)
Q Consensus 178 d~Vlv~~p~y~ 188 (459)
|.|++..|...
T Consensus 66 D~V~i~tp~~~ 76 (387)
T 3moi_A 66 DAVYIASPHQF 76 (387)
T ss_dssp SEEEECSCGGG
T ss_pred CEEEEcCCcHH
Confidence 66666666543
No 390
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=24.81 E-value=3.3e+02 Score=23.66 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHH---HHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHh--cCCeEEEEEc
Q 012628 243 GIDPTPEQWEKIADV---IQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFAT--RGMELLVAQS 301 (459)
Q Consensus 243 G~~~s~~~l~~i~~l---~~~~--~~~ii~Deay~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S 301 (459)
|..+.+..+++|.++ ..++ ++.|.+|.- .. ...+..+.. .+-++++++|
T Consensus 163 gq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGG---I~-------~~~~~~~~~~~aGad~~VvGS 218 (237)
T 3cu2_A 163 TKYPSELILDRVIQVEKRLGNRRVEKLINIDGS---MT-------LELAKYFKQGTHQIDWLVSGS 218 (237)
T ss_dssp EECCHHHHHHHHHHHHHHHGGGGGGCEEEEESS---CC-------HHHHHHHHHSSSCCCCEEECG
T ss_pred CeecChhHHHHHHHHHHHHHhcCCCceEEEECC---cC-------HHHHHHHHHhCCCCcEEEEee
Confidence 444544444444444 3332 567777742 21 224555556 5666676665
No 391
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=24.72 E-value=1.7e+02 Score=25.70 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=46.0
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCc----------chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc-
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWG----------NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA- 225 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~----------~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~- 225 (459)
..|+++++-... .......|.+|++..-.-. .....++..|.++..+..+- -|.+.+++.++.
T Consensus 11 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~ 84 (274)
T 3e03_A 11 ITGASRGIGLAI-ALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDI-----REEDQVRAAVAAT 84 (274)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCT-----TCHHHHHHHHHHH
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCC-----CCHHHHHHHHHHH
Confidence 467777776651 1222347888877653321 11222334466777776631 255555555442
Q ss_pred --CCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 226 --APGGSFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 226 --~~~~~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
...+.-+++.+......+ ...+.++|+++.++
T Consensus 85 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~v 120 (274)
T 3e03_A 85 VDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQV 120 (274)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhH
Confidence 111233555433322222 22566777776653
No 392
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=24.71 E-value=82 Score=30.51 Aligned_cols=85 Identities=12% Similarity=-0.069 Sum_probs=50.7
Q ss_pred hCCCCEEEEcCCCCcch-HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012628 174 YFPGAKVLISSPTWGNH-KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE 252 (459)
Q Consensus 174 ~~~gd~Vlv~~p~y~~~-~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~ 252 (459)
+.+-+-+++++|....- ....+.... ..+|+--++.+..+++.+.+.+... ..-++. .-+ |-.|.+ .+..
T Consensus 286 l~~y~i~~iEdPl~~dD~~g~~~l~~~--~~ipI~gDE~~vt~~~~~~~~i~~~--a~d~i~-ikv-~qiGGi---tea~ 356 (436)
T 2al1_A 286 MKRYPIVSIEDPFAEDDWEAWSHFFKT--AGIQIVADDLTVTNPKRIATAIEKK--AADALL-LKV-NQIGTL---SESI 356 (436)
T ss_dssp HHHSCEEEEECCSCTTCHHHHHHHHTT--CCSEEEESTTTTTCHHHHHHHHHTT--CCSEEE-ECH-HHHCCH---HHHH
T ss_pred HHhCCcEEEECCCCCcCHHHHHHHHhc--CCCeEEECCcccCCHHHHHHHHHhC--CCCEEE-ech-hhcCCH---HHHH
Confidence 33446899999975432 222222111 2344432443445899999999862 222332 222 445666 7889
Q ss_pred HHHHHHHhcCCeeEE
Q 012628 253 KIADVIQEKNHIPFF 267 (459)
Q Consensus 253 ~i~~l~~~~~~~ii~ 267 (459)
+++++|+++|+-+++
T Consensus 357 ~ia~lA~~~g~~~~~ 371 (436)
T 2al1_A 357 KAAQDSFAAGWGVMV 371 (436)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCeEEE
Confidence 999999999997755
No 393
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=24.69 E-value=2.5e+02 Score=24.96 Aligned_cols=95 Identities=20% Similarity=0.057 Sum_probs=47.3
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..||++++-... .......|.+|++..-.-.. ....++..|.++..+..+- -|.+.+++.+++ ...+
T Consensus 52 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~ 125 (291)
T 3ijr_A 52 ITGGDSGIGRAV-SIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDL-----SDEQHCKDIVQETVRQLGS 125 (291)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCT-----TSHHHHHHHHHHHHHHHSS
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776641 12224478888776433221 2233445677777776631 255555555442 1112
Q ss_pred cEEEEeCCCC-CCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAH-NPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~-NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+... .+.+. ..+.++++++.++
T Consensus 126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~v 156 (291)
T 3ijr_A 126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRI 156 (291)
T ss_dssp CCEEEECCCCCCCCSSGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCcCCCCCcccCCHHHHHHHHHH
Confidence 3345533222 12221 2367788877765
No 394
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=24.62 E-value=2.7e+02 Score=24.36 Aligned_cols=95 Identities=15% Similarity=0.018 Sum_probs=46.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CC-CC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP-GG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~-~~ 229 (459)
..|+++++-... .......|.+|++..-.-...... ++..|.++..+..+- -|.+.+++.++. .- .+
T Consensus 26 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~~~g~ 99 (273)
T 1ae1_A 26 VTGGSKGIGYAI-VEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDL-----LSRTERDKLMQTVAHVFDGK 99 (273)
T ss_dssp EESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHTTSC
T ss_pred EECCcchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777776541 122244788887765432222222 223466666666531 255666555432 11 13
Q ss_pred cEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+ ...+.++++++.++
T Consensus 100 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 129 (273)
T 1ae1_A 100 LNILVNNAGVVIHKEAKDFTEKDYNIIMGT 129 (273)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 34555443332222 23567778776654
No 395
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=24.62 E-value=91 Score=28.70 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=50.4
Q ss_pred CCcchHHHhhh-CCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 012628 186 TWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI 264 (459)
Q Consensus 186 ~y~~~~~~~~~-~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ 264 (459)
.|..+..++.. -..+++.+.+.. ....+...++++. +.-+++ .-|-+ .+.++.++|.++|+++|+.
T Consensus 68 ~~~~~~~ll~~~~~vD~V~i~tp~----~~H~~~~~~al~a---GkhVl~----EKP~a--~~~~e~~~l~~~a~~~g~~ 134 (330)
T 4ew6_A 68 SYTTIEAMLDAEPSIDAVSLCMPP----QYRYEAAYKALVA---GKHVFL----EKPPG--ATLSEVADLEALANKQGAS 134 (330)
T ss_dssp EESSHHHHHHHCTTCCEEEECSCH----HHHHHHHHHHHHT---TCEEEE----CSSSC--SSHHHHHHHHHHHHHHTCC
T ss_pred ccCCHHHHHhCCCCCCEEEEeCCc----HHHHHHHHHHHHc---CCcEEE----eCCCC--CCHHHHHHHHHHHHhcCCe
Confidence 46677888777 677777776621 2346667777775 444554 34543 3569999999999999998
Q ss_pred eEEeccC
Q 012628 265 PFFDVAY 271 (459)
Q Consensus 265 ii~Deay 271 (459)
+.+-..+
T Consensus 135 ~~v~~~~ 141 (330)
T 4ew6_A 135 LFASWHS 141 (330)
T ss_dssp EEECCGG
T ss_pred EEEEehh
Confidence 8876553
No 396
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=24.54 E-value=1.2e+02 Score=28.18 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=45.2
Q ss_pred CCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 012628 185 PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI 264 (459)
Q Consensus 185 p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ 264 (459)
+.|..+..++.....+++.+-+. . ....+...++++. ..-+++ .-|.+ .+.++.++|.++|+++|+.
T Consensus 52 ~~~~~~~~ll~~~~~D~V~i~tp--~--~~h~~~~~~al~a---GkhVl~----EKP~a--~~~~ea~~l~~~a~~~g~~ 118 (359)
T 3e18_A 52 KIYESYEAVLADEKVDAVLIATP--N--DSHKELAISALEA---GKHVVC----EKPVT--MTSEDLLAIMDVAKRVNKH 118 (359)
T ss_dssp CBCSCHHHHHHCTTCCEEEECSC--G--GGHHHHHHHHHHT---TCEEEE----ESSCC--SSHHHHHHHHHHHHHHTCC
T ss_pred ceeCCHHHHhcCCCCCEEEEcCC--c--HHHHHHHHHHHHC---CCCEEe----eCCCc--CCHHHHHHHHHHHHHhCCe
Confidence 34556666666556666666542 1 2345566666665 444444 34533 3568889999999998888
Q ss_pred eEEecc
Q 012628 265 PFFDVA 270 (459)
Q Consensus 265 ii~Dea 270 (459)
+.+-..
T Consensus 119 ~~v~~~ 124 (359)
T 3e18_A 119 FMVHQN 124 (359)
T ss_dssp EEEECG
T ss_pred EEEEee
Confidence 876544
No 397
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=24.47 E-value=2.1e+02 Score=24.81 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=44.9
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 232 (459)
..|+++++-.. +.. ....|.+|++.+-.-.......+....++..+..+ --|.+.+++.++.. ..+.-+
T Consensus 17 VTGas~gIG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~d~~~v~~~~~~~~~~~g~iD~ 89 (263)
T 3ak4_A 17 VTGGSKGIGAA--IARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVD-----VTKRASVDAAMQKAIDALGGFDL 89 (263)
T ss_dssp EETTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECC-----TTCHHHHHHHHHHHHHHHTCCCE
T ss_pred EeCCCChHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEe-----CCCHHHHHHHHHHHHHHcCCCCE
Confidence 46777777654 222 23478888776533222333333333244444442 12556666555420 012235
Q ss_pred EEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
++.+....+.+ ...+.+++++..++
T Consensus 90 lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 116 (263)
T 3ak4_A 90 LCANAGVSTMRPAVDITDEEWDFNFDV 116 (263)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHH
Confidence 55443322222 22566777777654
No 398
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=24.37 E-value=58 Score=32.64 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 79 ~~df~~Lv~~aH~~Gi~VilD~V~NHts~ 107 (557)
T 1zja_A 79 MEDFDRLMAELKKRGMRLMVDVVINHSSD 107 (557)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 49999999999999999999999887663
No 399
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=24.02 E-value=1.5e+02 Score=27.18 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=44.1
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+..++....++++.+-+.. ....+...++++. +.-+++ ..|.+ .+.++.++|.+.|+++|+.+
T Consensus 55 ~~~~~~~ll~~~~~D~V~i~tp~----~~h~~~~~~al~~---gk~vl~----EKP~~--~~~~e~~~l~~~a~~~g~~~ 121 (330)
T 3e9m_A 55 AYGSYEELCKDETIDIIYIPTYN----QGHYSAAKLALSQ---GKPVLL----EKPFT--LNAAEAEELFAIAQEQGVFL 121 (330)
T ss_dssp CBSSHHHHHHCTTCSEEEECCCG----GGHHHHHHHHHHT---TCCEEE----CSSCC--SSHHHHHHHHHHHHHTTCCE
T ss_pred eeCCHHHHhcCCCCCEEEEcCCC----HHHHHHHHHHHHC---CCeEEE----eCCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 45556666655555666554421 1234555666665 333444 34533 45688999999999999888
Q ss_pred EEeccC
Q 012628 266 FFDVAY 271 (459)
Q Consensus 266 i~Deay 271 (459)
.+.-.+
T Consensus 122 ~v~~~~ 127 (330)
T 3e9m_A 122 MEAQKS 127 (330)
T ss_dssp EECCSG
T ss_pred EEEEhh
Confidence 777553
No 400
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=23.85 E-value=2.7e+02 Score=21.94 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred CCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCC-CCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012628 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG-LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK 253 (459)
Q Consensus 175 ~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~-~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~ 253 (459)
.-|=+++.+..+ ...++..|.++..+.-..+ ++. -+...+.+.|++ +..-++++.| ++..-+..+-..
T Consensus 48 ~lGf~i~AT~GT----a~~L~~~Gi~v~~v~k~~e-gg~~~~~~~i~d~i~~---g~i~lVInt~---~~~~~~~~d~~~ 116 (143)
T 2yvq_A 48 NEGFKLFATEAT----SDWLNANNVPATPVAWPSQ-EGQNPSLSSIRKLIRD---GSIDLVINLP---NNNTKFVHDNYV 116 (143)
T ss_dssp TTTCEEEEEHHH----HHHHHHTTCCCEEECCGGG-C-----CBCHHHHHHT---TSCCEEEECC---CCCGGGHHHHHH
T ss_pred HCCCEEEECchH----HHHHHHcCCeEEEEEeccC-CCcccccccHHHHHHC---CCceEEEECC---CCCCcCCccHHH
Confidence 356677776533 3456778988887754212 111 011246667776 3333444344 332233577888
Q ss_pred HHHHHHhcCCeeEEe
Q 012628 254 IADVIQEKNHIPFFD 268 (459)
Q Consensus 254 i~~l~~~~~~~ii~D 268 (459)
|.+.|-+|+++++..
T Consensus 117 iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 117 IRRTAVDSGIPLLTN 131 (143)
T ss_dssp HHHHHHHTTCCEECS
T ss_pred HHHHHHHhCCCeEcC
Confidence 999999999998864
No 401
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=23.78 E-value=65 Score=32.67 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
+.++++++++-|+++|+-||.|-++...+.
T Consensus 197 t~~df~~Lv~~aH~~Gi~VilD~V~NH~~~ 226 (601)
T 3edf_A 197 SNEDFVRLSTEARKRGMGLIQDVVLSHIGK 226 (601)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECCcccCC
Confidence 349999999999999999999999876653
No 402
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=23.76 E-value=2e+02 Score=27.37 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=27.7
Q ss_pred CHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC
Q 012628 215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY 271 (459)
Q Consensus 215 d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay 271 (459)
..+..+++++. ..-+++ --|.+ .+.++.++|.++|+++|+.+.+...|
T Consensus 123 H~~~~~~al~a---GkhVl~----EKPla--~~~~ea~~l~~~a~~~g~~~~v~~~~ 170 (417)
T 3v5n_A 123 HYAAAKEFLKR---GIHVIC----DKPLT--STLADAKKLKKAADESDALFVLTHNY 170 (417)
T ss_dssp HHHHHHHHHTT---TCEEEE----ESSSC--SSHHHHHHHHHHHHHCSSCEEEECGG
T ss_pred HHHHHHHHHhC---CCeEEE----ECCCc--CCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 34455555554 333333 34433 34577778888888777777766553
No 403
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=23.67 E-value=52 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
+.++++++++-|+++|+-||.|-++...+
T Consensus 82 t~~~~~~lv~~~h~~Gi~vi~D~V~NH~~ 110 (449)
T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYNHTS 110 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcCc
Confidence 35999999999999999999999976655
No 404
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=23.55 E-value=62 Score=32.59 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 92 ~~df~~lv~~aH~~Gi~VilD~V~NH~s~ 120 (570)
T 1m53_A 92 MEDFDSLVAEMKKRNMRLMIDVVINHTSD 120 (570)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 49999999999999999999999877653
No 405
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=23.53 E-value=2.2e+02 Score=25.25 Aligned_cols=95 Identities=15% Similarity=0.037 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-...... +...|.++..+..+- -|.+.+++.++.. ..+.
T Consensus 33 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~i 106 (283)
T 3v8b_A 33 ITGAGSGIGRAT-ALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADV-----SDELQMRNAVRDLVLKFGHL 106 (283)
T ss_dssp EESCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHHhCCC
Confidence 467777776652 122344788888766443333222 234466777776631 2556665555431 1123
Q ss_pred EEEEeCCCCCCC-C--CCCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPT-G--IDPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPT-G--~~~s~~~l~~i~~l 257 (459)
-+++.+....+. + ...+.++|++..++
T Consensus 107 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~v 136 (283)
T 3v8b_A 107 DIVVANAGINGVWAPIDDLKPFEWDETIAV 136 (283)
T ss_dssp CEEEECCCCCCCBCCTTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 345543332211 2 24577888877764
No 406
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.51 E-value=2e+02 Score=24.29 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=36.7
Q ss_pred HHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012628 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262 (459)
Q Consensus 191 ~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~ 262 (459)
...++..|.+++.+.. ....+.+.+++.+..+. ++.++.-. ++ . ...++++++.+++.+
T Consensus 109 a~~l~~~G~~v~~LG~------~vp~~~l~~~~~~~~~d--~v~lS~~~-~~-~---~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 109 AMMLESGGFTVYNLGV------DIEPGKFVEAVKKYQPD--IVGMSALL-TT-T---MMNMKSTIDALIAAG 167 (210)
T ss_dssp HHHHHHTTCEEEECCS------SBCHHHHHHHHHHHCCS--EEEEECCS-GG-G---THHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCC--EEEEeccc-cc-c---HHHHHHHHHHHHhcC
Confidence 3456678988887643 35778888888764333 33333322 21 2 377888888888754
No 407
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=23.50 E-value=2.4e+02 Score=24.75 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=54.1
Q ss_pred CceEEeecccchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCC
Q 012628 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (459)
Q Consensus 150 ~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~ 228 (459)
..+++ ..|++.++-.+. .......|-+|++.+-.- ......++..|.++..+..+-. |.+.+++.++. .
T Consensus 9 GKval--VTGas~GIG~ai-A~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~-----d~~~v~~~~~~--g 78 (247)
T 4hp8_A 9 GRKAL--VTGANTGLGQAI-AVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFA-----DPLAAKDSFTD--A 78 (247)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT-----STTTTTTSSTT--T
T ss_pred CCEEE--EeCcCCHHHHHH-HHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCC-----CHHHHHHHHHh--C
Confidence 34555 567777777652 122345888887765322 2334556677888888776421 22333333333 1
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l~ 258 (459)
+--+++.|..-++.+. -++.++|+++.++-
T Consensus 79 ~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vN 110 (247)
T 4hp8_A 79 GFDILVNNAGIIRRADSVEFSELDWDEVMDVN 110 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccccHHHHHHHHHHH
Confidence 2335553333333332 36889999998763
No 408
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=23.50 E-value=2e+02 Score=26.17 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=45.8
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+..+++...++++.+-+. . ....+...++++. +.-+++ .=|.. .+.++.++|.+.|+++|+.+
T Consensus 54 ~~~~~~~ll~~~~~D~V~i~tp--~--~~h~~~~~~al~a---GkhVl~----EKP~a--~~~~e~~~l~~~a~~~g~~~ 120 (336)
T 2p2s_A 54 FAASAEQLITDASIDLIACAVI--P--CDRAELALRTLDA---GKDFFT----AKPPL--TTLEQLDAVQRRVAETGRKF 120 (336)
T ss_dssp BCSCHHHHHTCTTCCEEEECSC--G--GGHHHHHHHHHHT---TCEEEE----CSSCC--SCHHHHHHHHHHHHHHCCCE
T ss_pred ccCCHHHHhhCCCCCEEEEeCC--h--hhHHHHHHHHHHC---CCcEEE----eCCCC--CCHHHHHHHHHHHHHcCCEE
Confidence 4556666666556677766552 1 2345666667765 333444 23433 45688999999999999888
Q ss_pred EEecc
Q 012628 266 FFDVA 270 (459)
Q Consensus 266 i~Dea 270 (459)
.+.-.
T Consensus 121 ~v~~~ 125 (336)
T 2p2s_A 121 AVYFN 125 (336)
T ss_dssp EECCT
T ss_pred EEeec
Confidence 76544
No 409
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=23.47 E-value=1.2e+02 Score=25.78 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=48.5
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhh----hCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CC
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~----~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~ 228 (459)
..||++++-.. +.. ....|.+|++..-.-.......+ ..|.++..+..+- -|.+.+++.++.. ..
T Consensus 7 ITGas~gIG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 7 ITGASRGIGEA--IARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV-----SKAESVEEFSKKVLERFG 79 (235)
T ss_dssp EESCSSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCT-----TCHHHHHHHCC-HHHHHS
T ss_pred EECCCcHHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEecc-----CCHHHHHHHHHHHHHhcC
Confidence 36677766654 222 23478888876654333322222 3466777776531 2566666655421 01
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.-+++++....+.+. ..+.+++++..++
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 110 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEV 110 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHH
Confidence 2235554444333332 3467778777664
No 410
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=23.45 E-value=2e+02 Score=26.09 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+...++...++++.+-+.+ ....+.+.++++. ..-+++ ..|.+ .+.++.++|.++|+++|+.+
T Consensus 50 ~~~~~~~~l~~~~~D~V~i~tp~----~~h~~~~~~al~~---Gk~v~~----ekP~~--~~~~~~~~l~~~a~~~g~~~ 116 (332)
T 2glx_A 50 SVTSVEELVGDPDVDAVYVSTTN----ELHREQTLAAIRA---GKHVLC----EKPLA--MTLEDAREMVVAAREAGVVL 116 (332)
T ss_dssp CBSCHHHHHTCTTCCEEEECSCG----GGHHHHHHHHHHT---TCEEEE----CSSSC--SSHHHHHHHHHHHHHHTCCE
T ss_pred ccCCHHHHhcCCCCCEEEEeCCh----hHhHHHHHHHHHC---CCeEEE----eCCCc--CCHHHHHHHHHHHHHcCCEE
Confidence 45556666655456666665421 1234556666665 443443 34543 46799999999999999887
Q ss_pred EEecc
Q 012628 266 FFDVA 270 (459)
Q Consensus 266 i~Dea 270 (459)
.+.-.
T Consensus 117 ~~~~~ 121 (332)
T 2glx_A 117 GTNHH 121 (332)
T ss_dssp EECCC
T ss_pred EEeeh
Confidence 76443
No 411
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=23.33 E-value=4e+02 Score=23.72 Aligned_cols=119 Identities=9% Similarity=-0.020 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCCCccccCceEEeecccchhHHHHHHHHHHHhCCCCEEEEcC--CCCcchHHH--hhhCCCCeeeee
Q 012628 130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS--PTWGNHKNI--FNDARVPWSEYR 205 (459)
Q Consensus 130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a~~l~~~~~~~~~~gd~Vlv~~--p~y~~~~~~--~~~~G~~v~~v~ 205 (459)
+.++.|+++.... +.+...++ |.+.++....+++....-...-+|++.+ |.+.+..-. +...|.++..++
T Consensus 94 ~~~~~Ia~~a~~~----I~~g~~Il--T~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli~ 167 (276)
T 1vb5_A 94 EAKRELASIGAQL----IDDGDVII--THSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFEVIT 167 (276)
T ss_dssp HHHHHHHHHHHHH----CCTTEEEE--CCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHH----ccCCCEEE--EeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEEc
Confidence 4556666654332 12345666 6666554444422211112334677744 666553222 334688877775
Q ss_pred eecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012628 206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (459)
Q Consensus 206 ~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~ 267 (459)
- ..+-..+.. -.++++=..-=...|.+.++----.++..|+++++.+++
T Consensus 168 d----------sa~~~~m~~---vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V 216 (276)
T 1vb5_A 168 D----------AQMGLFCRE---ASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYV 216 (276)
T ss_dssp G----------GGHHHHHTT---CSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred H----------HHHHHHHcc---CCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEE
Confidence 2 112223332 455665333333344444443344688888999887776
No 412
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=23.30 E-value=1.3e+02 Score=25.15 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=42.1
Q ss_pred HHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 192 NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 192 ~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
.+++..|.+++...++..+....+.+.+.+.+....+..+++++..+. .+.+-+.+|++..++.|.-++
T Consensus 112 ~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~~~~g~IiL~Hd~~~------~t~~al~~ii~~l~~~Gy~~v 180 (195)
T 2cc0_A 112 SVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSRLGNGQVILMHDWPA------NTLAAIPRIAQTLAGKGLCSG 180 (195)
T ss_dssp HHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHTCCTTCEEEEESSCH------HHHHHHHHHHHHHHHTTEEEC
T ss_pred HHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhCcCcCeEEEECCCch------hHHHHHHHHHHHHHHCCCEEE
Confidence 345566776665554322222356777777776655566666664321 134778999999888875443
No 413
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=23.13 E-value=1.4e+02 Score=27.37 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=44.6
Q ss_pred CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 187 y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
|..+..++.....+++.+-+.. ....+...++++. +.-+++ ..|.+ .+.++.++|.++|+++|+.+.
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~----~~h~~~~~~al~a---Gk~Vl~----EKP~a--~~~~e~~~l~~~a~~~~~~~~ 122 (329)
T 3evn_A 56 YDKLEDMLADESIDVIYVATIN----QDHYKVAKAALLA---GKHVLV----EKPFT--LTYDQANELFALAESCNLFLM 122 (329)
T ss_dssp ESCHHHHHTCTTCCEEEECSCG----GGHHHHHHHHHHT---TCEEEE----ESSCC--SSHHHHHHHHHHHHHTTCCEE
T ss_pred cCCHHHHhcCCCCCEEEECCCc----HHHHHHHHHHHHC---CCeEEE----ccCCc--CCHHHHHHHHHHHHHcCCEEE
Confidence 4456666665556666665521 1345666667765 444444 34533 356999999999999999887
Q ss_pred Eecc
Q 012628 267 FDVA 270 (459)
Q Consensus 267 ~Dea 270 (459)
+-..
T Consensus 123 v~~~ 126 (329)
T 3evn_A 123 EAQK 126 (329)
T ss_dssp EECS
T ss_pred EEEc
Confidence 6543
No 414
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=23.08 E-value=1.7e+02 Score=26.50 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCcE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012628 216 FEGMIADIKAAPGGSF-ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~-~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Dea 270 (459)
.+.++++++. ..+ ++++ .+|. +.++.++|.+.|+++++.++-.++
T Consensus 84 ~~~v~ea~~~---Gi~~vVi~-----t~G~--~~~~~~~l~~~A~~~gi~viGPNc 129 (294)
T 2yv1_A 84 KDAVFEAIDA---GIELIVVI-----TEHI--PVHDTMEFVNYAEDVGVKIIGPNT 129 (294)
T ss_dssp HHHHHHHHHT---TCSEEEEC-----CSCC--CHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHHHHC---CCCEEEEE-----CCCC--CHHHHHHHHHHHHHcCCEEEcCCC
Confidence 5566666665 344 3432 2343 457789999999999998887876
No 415
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Probab=23.06 E-value=36 Score=34.93 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
.++++++++-|+++|+-||.|-+|...+.+
T Consensus 181 ~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~ 210 (637)
T 1gjw_A 181 DEEFKAFVEACHILGIRVILDFIPRTAARD 210 (637)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTEEETT
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCCcCc
Confidence 499999999999999999999998876643
No 416
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=23.00 E-value=2.5e+02 Score=25.62 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCC--CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012628 214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGID--PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT 291 (459)
Q Consensus 214 ~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~--~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~ 291 (459)
+-...|++.++. ....+.+++.|..|.|.- +... -+.++|+++|+.++.-+- +. +...+..+..
T Consensus 13 fa~~~L~~L~~~--~~~v~~Vvt~pd~~~grg~~l~~~---~v~~~A~~~gIpv~~~~~---~~------~~~~~~~l~~ 78 (314)
T 3tqq_A 13 FAVPTLRALIDS--SHRVLAVYTQPDRPSGRGQKIMES---PVKEIARQNEIPIIQPFS---LR------DEVEQEKLIA 78 (314)
T ss_dssp GGHHHHHHHHHS--SSEEEEEECCCC----------CC---HHHHHHHHTTCCEECCSC---SS------SHHHHHHHHT
T ss_pred HHHHHHHHHHHC--CCeEEEEEeCCCCccccCCccCCC---HHHHHHHHcCCCEECccc---CC------CHHHHHHHHh
Confidence 344566666664 134566678899998753 2222 356778899999763221 11 1112233334
Q ss_pred cCCeEEEEEcCCcCccc---CCCCcceEEE
Q 012628 292 RGMELLVAQSYSKNLGL---YAERIGAMNV 318 (459)
Q Consensus 292 ~~~~~i~~~S~SK~~~~---~G~RiG~~~~ 318 (459)
...+++++.+|.+.+.- .-.+.|.+.+
T Consensus 79 ~~~Dliv~~~~~~ilp~~il~~~~~g~iNi 108 (314)
T 3tqq_A 79 MNADVMVVVAYGLILPKKALNAFRLGCVNV 108 (314)
T ss_dssp TCCSEEEEESCCSCCCHHHHTSSTTCEEEE
T ss_pred cCCCEEEEcCcccccCHHHHhhCcCCEEEe
Confidence 45688999999876631 1245677755
No 417
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=22.89 E-value=1.3e+02 Score=21.19 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEec
Q 012628 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDV 269 (459)
Q Consensus 216 ~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~De 269 (459)
.+...++++. ....++++.+=. +++-...|-.+|+++++.++.-.
T Consensus 16 ~~~v~kai~~--gkaklViiA~D~-------~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKR--GSVKEVVVAKDA-------DPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTT--TCEEEEEEETTS-------CHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHc--CCeeEEEEeCCC-------CHHHHHHHHHHHHHcCCCEEEEC
Confidence 3566677765 356677663322 23678889999999999887644
No 418
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=22.84 E-value=2.4e+02 Score=24.93 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=45.4
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhh----CCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CC
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~----~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~ 228 (459)
..|+++++-.. +.. ....|.+|++..-.-.......+. .|.++..+..+ --|.+.+++.++.. ..
T Consensus 31 ITGasggiG~~--la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-----l~~~~~~~~~~~~~~~~~g 103 (302)
T 1w6u_A 31 ITGGGTGLGKG--MTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD-----VRDPDMVQNTVSELIKVAG 103 (302)
T ss_dssp EETTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECC-----TTCHHHHHHHHHHHHHHTC
T ss_pred EECCCchHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeC-----CCCHHHHHHHHHHHHHHcC
Confidence 36777776654 222 234788887765432222222221 15566666652 12556666555431 11
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.-+++++......+. ..+.+++++..++
T Consensus 104 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 134 (302)
T 1w6u_A 104 HPNIVINNAAGNFISPTERLSPNAWKTITDI 134 (302)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHH
Confidence 2235554433222221 3456777766554
No 419
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=22.83 E-value=1.8e+02 Score=25.61 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=47.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEc-CCCCcc---hHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLIS-SPTWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~-~p~y~~---~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..|+++++-... .......|.+|++. ...-.. ....++..|.++..+..+- -|.+.+++.++. ...+
T Consensus 32 VTGas~GIG~ai-a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-----~~~~~v~~~~~~~~~~~g~ 105 (267)
T 3u5t_A 32 VTGASRGIGAAI-AARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADV-----SDPAAVRRLFATAEEAFGG 105 (267)
T ss_dssp EESCSSHHHHHH-HHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCCHHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCC-----CCHHHHHHHHHHHHHHcCC
Confidence 467777776641 12223468888774 222211 2223345577777776631 255665555442 1113
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+..-.+.+. -.+.++|+++.++
T Consensus 106 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~v 135 (267)
T 3u5t_A 106 VDVLVNNAGIMPLTTIAETGDAVFDRVIAV 135 (267)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 445554443333332 3466777776654
No 420
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=22.83 E-value=64 Score=33.05 Aligned_cols=29 Identities=3% Similarity=0.078 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
+.++++++++-|+++|+-||.|-++...+
T Consensus 284 t~~df~~LV~~aH~~GI~VIlD~V~NHts 312 (645)
T 4aef_A 284 GDRAFVDLLSELKRFDIKVILDGVFHHTS 312 (645)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHhhhcCCEEEEEecccccc
Confidence 45999999999999999999999987654
No 421
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=22.70 E-value=47 Score=31.40 Aligned_cols=69 Identities=7% Similarity=-0.002 Sum_probs=39.9
Q ss_pred HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEE-EeCC--CCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 193 IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL-LHGC--AHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 193 ~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~i-i~~~--p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
.+...+..+..+-+.++.+|.+..+.+-+... .+ .+ -... ...+.|-.+|++++++|++.|+++||-||
T Consensus 41 ~mA~~KlN~lH~HltDdq~~rle~~~~~~~~~----~~-~~~~~g~~~~~~~~~g~YT~~di~eiv~YA~~rgI~VI 112 (367)
T 1yht_A 41 TISLSGGNFLHLHFSDHENYAIESHLLNQRAE----NA-VQGKDGIYINPYTGKPFLSYRQLDDIKAYAKAKGIELI 112 (367)
T ss_dssp HHHHTTCCEEEEECBSSSCBCBCBTTTTBCGG----GS-EECTTSCEECTTTCCEEBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHcCCcEEEEEEEcCCCceeeecchhhhhh----hh-ccccCCCcCCCCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 34456777777777655566665432211000 00 00 0000 11222457999999999999999999888
No 422
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=22.57 E-value=66 Score=32.23 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~ 275 (459)
.++++++++-|+++|+-||.|-++...+
T Consensus 78 ~~df~~lv~~~h~~Gi~VilD~V~NH~s 105 (558)
T 1uok_A 78 MEDWDELLHEMHERNMKLMMDLVVNHTS 105 (558)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 4999999999999999999999987765
No 423
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=22.42 E-value=2.4e+02 Score=25.10 Aligned_cols=95 Identities=21% Similarity=0.049 Sum_probs=47.2
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCc-----chHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWG-----NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~-----~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~ 228 (459)
..|+++++-... .......|.+|++..-.-. .....++..|.++..+..+ --|.+.+++.++. ...
T Consensus 54 VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g 127 (294)
T 3r3s_A 54 VTGGDSGIGRAA-AIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGD-----LSDESFARSLVHKAREALG 127 (294)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCC-----TTSHHHHHHHHHHHHHHHT
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEec-----CCCHHHHHHHHHHHHHHcC
Confidence 467777776651 1223447888887543311 1222334567777766653 1255555554432 111
Q ss_pred CcEEEEeCCCC-CCCC--CCCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAH-NPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~-NPTG--~~~s~~~l~~i~~l 257 (459)
+.-+++.+... .+.+ ..++.++|++..++
T Consensus 128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 159 (294)
T 3r3s_A 128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAV 159 (294)
T ss_dssp CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHH
Confidence 23345533322 1222 23577888887765
No 424
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=22.40 E-value=2.3e+02 Score=25.01 Aligned_cols=95 Identities=15% Similarity=0.025 Sum_probs=47.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHh---hhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++..-.-....... +..|.++..+..+ --|.+.+++.++. ...+.
T Consensus 13 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~i 86 (280)
T 3tox_A 13 VTGASSGIGRAA-ALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGD-----VGDEALHEALVELAVRRFGGL 86 (280)
T ss_dssp ESSTTSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 467777776641 1223447888888765433333322 2345666666552 1245555555442 11123
Q ss_pred EEEEeCCCCC-CCCC--CCCHHHHHHHHHH
Q 012628 231 FILLHGCAHN-PTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~N-PTG~--~~s~~~l~~i~~l 257 (459)
-+++.+.... +.+. ..+.+++++..++
T Consensus 87 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~v 116 (280)
T 3tox_A 87 DTAFNNAGALGAMGEISSLSVEGWRETLDT 116 (280)
T ss_dssp CEEEECCCCCCSCSCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHH
Confidence 3455333211 2222 3567888877764
No 425
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=22.32 E-value=2.3e+02 Score=28.02 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=55.7
Q ss_pred cccCceEEeecccchhHHHHHHHHHHH-hCCCCE-EEEc-CCC----------------CcchHHHhhhCCCCeeeeeee
Q 012628 147 LKEQRVATVQGLSGTGSLRLAAALIER-YFPGAK-VLIS-SPT----------------WGNHKNIFNDARVPWSEYRYY 207 (459)
Q Consensus 147 ~~~~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~-Vlv~-~p~----------------y~~~~~~~~~~G~~v~~v~~~ 207 (459)
+.++.+++ ..||++++-.. +... ...|.. |++. .-. -......++..|.++..+..+
T Consensus 248 ~~~~~~vL--ITGgsgGIG~~--lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~D 323 (525)
T 3qp9_A 248 WQADGTVL--VTGAEEPAAAE--AARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCD 323 (525)
T ss_dssp SCTTSEEE--ESSTTSHHHHH--HHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECC
T ss_pred ecCCCEEE--EECCCCcHHHH--HHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECC
Confidence 34556666 68888888775 2222 235554 4443 221 112233344568888887763
Q ss_pred cCCCCCCCHHHHHHHHHcCC--CCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 208 DPKTVGLDFEGMIADIKAAP--GGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 208 ~~~~~~~d~e~l~~~i~~~~--~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
- -|.+.+.+.+.... .+..++|++..-...+. .++.++++++.+.
T Consensus 324 v-----td~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~ 372 (525)
T 3qp9_A 324 L-----TDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTA 372 (525)
T ss_dssp T-----TSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHH
Confidence 1 36778887776531 23445554443333332 3567777777654
No 426
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=22.05 E-value=2.4e+02 Score=24.48 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=44.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHhhh---C-CCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCC
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND---A-RVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~---~-G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~ 229 (459)
..|+++++-... .......|.+|++..-.-.......+. . |.++..++.+ --|.+.+++.++.. ..+
T Consensus 12 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~ 85 (263)
T 3ai3_A 12 ITGSSSGIGLAI-AEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVD-----VATPEGVDAVVESVRSSFGG 85 (263)
T ss_dssp EESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECC-----TTSHHHHHHHHHHHHHHHSS
T ss_pred EECCCchHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcC-----CCCHHHHHHHHHHHHHHcCC
Confidence 366777766541 122234788887765332222222221 1 5566666652 12556666555421 012
Q ss_pred cEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+ ...+.+++++..++
T Consensus 86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 115 (263)
T 3ai3_A 86 ADILVNNAGTGSNETIMEAADEKWQFYWEL 115 (263)
T ss_dssp CSEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 23455433322222 12466777776653
No 427
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=21.90 E-value=2e+02 Score=24.94 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhh---C--C-CCeeeeeeecCCCCCCCHHHHHHHHHc---C
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFND---A--R-VPWSEYRYYDPKTVGLDFEGMIADIKA---A 226 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~---~--G-~~v~~v~~~~~~~~~~d~e~l~~~i~~---~ 226 (459)
..||++++-.. +.. ....|.+|++..-.-.......+. . + .++..++.+- -|.+.+++.++. .
T Consensus 12 VTGas~GIG~a--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 12 ITGASQGIGAV--IAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDI-----TDCTKADTEIKDIHQK 84 (250)
T ss_dssp EESTTSHHHHH--HHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCT-----TCHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHH--HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccC-----CCHHHHHHHHHHHHHh
Confidence 46777777654 222 234678888765443333322221 1 2 4555665531 255555555443 1
Q ss_pred CCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHH
Q 012628 227 PGGSFILLHGCAHNPTG-IDPTPEQWEKIADV 257 (459)
Q Consensus 227 ~~~~~~ii~~~p~NPTG-~~~s~~~l~~i~~l 257 (459)
..+.-+++.+......+ ...+.++|++..++
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~v 116 (250)
T 3nyw_A 85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEI 116 (250)
T ss_dssp HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHH
T ss_pred cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHH
Confidence 12344555444332222 24455667666654
No 428
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=21.78 E-value=1.3e+02 Score=27.53 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=48.9
Q ss_pred CceEEeecccchhHHHHHHHHHHH-hCCCCEEEEcC-CC--CcchH---HHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012628 150 QRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISS-PT--WGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 150 ~~i~~~~t~ggt~a~~l~~~~~~~-~~~gd~Vlv~~-p~--y~~~~---~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
..|++ .|+||.+-.. ++.. +..|..|.+.. .. ...-. ..+...|++++..++ -|.+.+.++
T Consensus 11 ~~IlV---tGatG~iG~~--l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl-------~d~~~l~~~ 78 (346)
T 3i6i_A 11 GRVLI---AGATGFIGQF--VATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLI-------NEQEAMEKI 78 (346)
T ss_dssp CCEEE---ECTTSHHHHH--HHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCT-------TCHHHHHHH
T ss_pred CeEEE---ECCCcHHHHH--HHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeec-------CCHHHHHHH
Confidence 45666 5666655443 2222 33555555443 21 11111 122345555554433 268889998
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeEE
Q 012628 223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFF 267 (459)
Q Consensus 223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~-~~ii~ 267 (459)
+++.. ...++......|.. .-..|++.|++.+ +-.++
T Consensus 79 ~~~~~-~d~Vi~~a~~~n~~-------~~~~l~~aa~~~g~v~~~v 116 (346)
T 3i6i_A 79 LKEHE-IDIVVSTVGGESIL-------DQIALVKAMKAVGTIKRFL 116 (346)
T ss_dssp HHHTT-CCEEEECCCGGGGG-------GHHHHHHHHHHHCCCSEEE
T ss_pred HhhCC-CCEEEECCchhhHH-------HHHHHHHHHHHcCCceEEe
Confidence 88421 23333332233433 3457888898888 54443
No 429
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=21.77 E-value=2.1e+02 Score=24.82 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=45.0
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcc--hHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CC
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGN--HKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~--~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~ 227 (459)
..|+++++-.. +.. ....|.+|++..-.-.. ... .++..|.++..+..+- -|.+.+++.++. .-
T Consensus 7 VTGas~gIG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 7 VTGGAQGIGRG--ISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDV-----TDKANFDSAIDEAAEKL 79 (258)
T ss_dssp EETTTSHHHHH--HHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCT-----TCHHHHHHHHHHHHHHH
T ss_pred EeCCCcHHHHH--HHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHHh
Confidence 46777776654 222 23367777775433222 222 2223466666666531 255665555542 10
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 228 ~~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.+.-+++.+....+.+. ..+.++++++.++
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 111 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSV 111 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHh
Confidence 12235554333222222 2466777776654
No 430
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=21.70 E-value=72 Score=32.38 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-+|...+.
T Consensus 192 ~~d~~~lv~~~H~~Gi~VilD~V~NH~~~ 220 (602)
T 2bhu_A 192 PEDLMALVDAAHRLGLGVFLDVVYNHFGP 220 (602)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 59999999999999999999999988764
No 431
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=21.70 E-value=2.4e+02 Score=24.48 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=44.3
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CCCcEE
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFI 232 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 232 (459)
..|+++++-.. +.. ....|.+|++..-.-.......+..+.++..+..+ --|.+.+++.++.. -.+.-+
T Consensus 12 VTGas~gIG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~iD~ 84 (260)
T 1nff_A 12 VSGGARGMGAS--HVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLD-----VTQPAQWKAAVDTAVTAFGGLHV 84 (260)
T ss_dssp EETTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EeCCCCHHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEec-----CCCHHHHHHHHHHHHHHcCCCCE
Confidence 46777777654 222 23478888775433222223333333334444442 12566666655420 012235
Q ss_pred EEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 233 LLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 233 ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
++.+......+ ...+.+++++..++
T Consensus 85 lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 111 (260)
T 1nff_A 85 LVNNAGILNIGTIEDYALTEWQRILDV 111 (260)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55443322222 12466777766654
No 432
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=21.56 E-value=71 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
+.++++++++-|+++|+-||.|-++...+.
T Consensus 86 t~~df~~lv~~~h~~Gi~VilD~V~NH~~~ 115 (589)
T 3aj7_A 86 TNEDCFALIEKTHKLGMKFITDLVINHCSS 115 (589)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 349999999999999999999999877653
No 433
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=21.41 E-value=1.4e+02 Score=27.53 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=41.4
Q ss_pred CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 187 y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
|..|..++..-..+++.|-+. . ....+...++++. +.-+++ -=|.+ .+.++.++|++.|+++|+.+.
T Consensus 75 y~d~~ell~~~~iDaV~I~tP--~--~~H~~~~~~al~a---GkhVl~----EKPla--~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 75 FGSYEEMLASDVIDAVYIPLP--T--SQHIEWSIKAADA---GKHVVC----EKPLA--LKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp ESSHHHHHHCSSCSEEEECSC--G--GGHHHHHHHHHHT---TCEEEE----CSCCC--SSGGGGHHHHHHHHHHTCCEE
T ss_pred eCCHHHHhcCCCCCEEEEeCC--C--chhHHHHHHHHhc---CCEEEE----eCCcc--cchhhHHHHHHHHHHcCCcee
Confidence 455666666555566665542 1 1345556666664 333444 34433 234778888888888888877
Q ss_pred Eecc
Q 012628 267 FDVA 270 (459)
Q Consensus 267 ~Dea 270 (459)
+.-.
T Consensus 142 v~~~ 145 (350)
T 4had_A 142 EAYM 145 (350)
T ss_dssp ECCG
T ss_pred Eeee
Confidence 7654
No 434
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=21.22 E-value=2.6e+02 Score=26.93 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCC----cchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeC
Q 012628 161 TGSLRLAAALIERYFPGAKVLISSPTW----GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (459)
Q Consensus 161 t~a~~l~~~~~~~~~~gd~Vlv~~p~y----~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~ 236 (459)
.+.+.+...+ +.+-+.+.+++|.. ..|..+.+..| + +|+--++.+.-+++.+.+.++..- ...+.+
T Consensus 282 ~elid~y~~l---le~ypI~~IEDPl~~dD~eg~a~Lt~~lg-~---i~IvGDEl~vTn~~~i~~~Ie~~a-~n~IlI-- 351 (441)
T 3qtp_A 282 DGLIAEYVDY---GKHYPIASIEDPFAEDDWAAWNKFTVEHG-N---FQIVGDDLLVTNPARVQMAMDKNA-CNSVLI-- 351 (441)
T ss_dssp HHHHHHHHHH---HHHSCEEEEESCSCTTCHHHHHHHHHHTT-T---SEEEESTTTTTCHHHHHHHHHHTC-CSEEEE--
T ss_pred HHHHHHHHHH---hhhcceeeecCCCChHHHHHHHHHHHhcC-C---ceEEeccccccCHHHHHHHHHcCC-CCEEEe--
Confidence 4445444333 33335889999864 35555666666 3 232224444557999999988621 223333
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012628 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD 268 (459)
Q Consensus 237 ~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii~D 268 (459)
=-|-.|.+ .+..+++++|+++|+-+++=
T Consensus 352 -KvnqiGGI---TEalkaa~lA~~~G~~vmvs 379 (441)
T 3qtp_A 352 -KVNQIGTL---TETFKTIKMAQEKGWGVMAS 379 (441)
T ss_dssp -CGGGTCCH---HHHHHHHHHHHHTTCEEEEE
T ss_pred -cccccccH---HHHHHHHHHHHHcCCeEEEe
Confidence 23456666 88999999999999987753
No 435
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=21.21 E-value=71 Score=31.88 Aligned_cols=29 Identities=3% Similarity=0.035 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-++...+.
T Consensus 78 ~~df~~lv~~~h~~Gi~VilD~V~NH~s~ 106 (543)
T 2zic_A 78 MADMDNLLTQAKMRGIKIIMDLVVNHTSD 106 (543)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccc
Confidence 49999999999999999999999877653
No 436
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=21.15 E-value=1.6e+02 Score=25.39 Aligned_cols=95 Identities=17% Similarity=0.048 Sum_probs=46.2
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-... .......|.+|++.+-.-...... ++..+.++..+..+- -|.+.+++.++. ...+.
T Consensus 14 ITGas~giG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~i 87 (253)
T 3qiv_A 14 VTGSGGGIGQAY-AEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDV-----SDPESAKAMADRTLAEFGGI 87 (253)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCT-----TSHHHHHHHHHHHHHHHSCC
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHHHcCCC
Confidence 467777766541 122244788888766443333222 233466666666531 255555555442 11122
Q ss_pred EEEEeCCCC---CCCC--CCCCHHHHHHHHHH
Q 012628 231 FILLHGCAH---NPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~---NPTG--~~~s~~~l~~i~~l 257 (459)
-+++++..- .+.+ ...+.+++++..++
T Consensus 88 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~ 119 (253)
T 3qiv_A 88 DYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSV 119 (253)
T ss_dssp CEEEECCCCCCGGGGGCTTTSCHHHHHHHHHH
T ss_pred CEEEECCCcCCCCCCcccccCCHHHHHHHHhh
Confidence 345533221 1111 23567777777654
No 437
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=21.06 E-value=2.1e+02 Score=26.29 Aligned_cols=72 Identities=8% Similarity=0.225 Sum_probs=43.6
Q ss_pred CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 187 y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
|..|..++..-..+++.+-+. . ....+...++++. +.-+++ .=|.+ .+.++.++|.+.|+++|+.+.
T Consensus 71 ~~~~~~ll~~~~vD~V~i~tp--~--~~H~~~~~~al~a---GkhVl~----EKPla--~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 71 FDSYEELLESGLVDAVDLTLP--V--ELNLPFIEKALRK---GVHVIC----EKPIS--TDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp ESCHHHHHHSSCCSEEEECCC--G--GGHHHHHHHHHHT---TCEEEE----ESSSS--SSHHHHHHHHHHHHHCSSCEE
T ss_pred cCCHHHHhcCCCCCEEEEeCC--c--hHHHHHHHHHHHC---CCcEEE----eCCCC--CCHHHHHHHHHHHHHcCCeEE
Confidence 445666665555666666542 1 1234556666665 333444 23433 366889999999999998887
Q ss_pred EeccC
Q 012628 267 FDVAY 271 (459)
Q Consensus 267 ~Deay 271 (459)
+--.+
T Consensus 138 v~~~~ 142 (340)
T 1zh8_A 138 IAENF 142 (340)
T ss_dssp EECGG
T ss_pred EEecc
Confidence 76553
No 438
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=21.04 E-value=69 Score=32.06 Aligned_cols=29 Identities=3% Similarity=0.165 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++.|+++|+-||.|-++...+.
T Consensus 78 ~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 106 (555)
T 2ze0_A 78 MDDFDELLAQAHRRGLKVILDLVINHTSD 106 (555)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 49999999999999999999999877653
No 439
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=21.03 E-value=4.1e+02 Score=23.07 Aligned_cols=96 Identities=11% Similarity=-0.067 Sum_probs=56.0
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcC---CC-----------CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHH
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISS---PT-----------WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~---p~-----------y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~ 222 (459)
.+||..+...+..+ ...|-.|.... |. .......++..|.+...+++..++ .-..+++.++
T Consensus 11 ~SGGkDSs~al~~l---~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~--~~e~e~l~~~ 85 (237)
T 3rjz_A 11 YSGGKDSNYALYWA---IKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEK--EKEVEDLKRV 85 (237)
T ss_dssp CCSSHHHHHHHHHH---HHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--------CHHHHHHH
T ss_pred ecCcHHHHHHHHHH---HHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCc--hHHHHHHHHH
Confidence 78888887776322 33455543221 11 112344666789888888774221 2236777777
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 223 i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
++.. ..-.++ +|.+.+..+...+=++|.+.|+..+
T Consensus 86 l~~~--~i~~vv-------~Gdi~s~yqr~r~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 86 LSGL--KIQGIV-------AGALASKYQRKRIEKVAKELGLEVY 120 (237)
T ss_dssp HTTS--CCSEEE-------CC---CCSHHHHHHHHHHHTTCEEE
T ss_pred HHhc--CCcEEE-------ECCcchHHHHHHHHHHHHHcCCEEE
Confidence 7653 222333 6888888899999999999998766
No 440
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=20.95 E-value=2.4e+02 Score=28.17 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=47.2
Q ss_pred CCCCEEEEcCCCCcch-------HHHhhhCCCCeeeeeee-cCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012628 175 FPGAKVLISSPTWGNH-------KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246 (459)
Q Consensus 175 ~~gd~Vlv~~p~y~~~-------~~~~~~~G~~v~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~ 246 (459)
.++|.|++....+++. .+.+...|++++..... -.-.+--|.++|...++...++..+.+ | |-.
T Consensus 337 ~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipv----H---Ge~- 408 (562)
T 3bk2_A 337 KPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPW----H---GEV- 408 (562)
T ss_dssp CTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEE----S---BCH-
T ss_pred CCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEE----c---CCH-
Confidence 5889999988766654 23344678887653210 011234577777777766434433333 2 333
Q ss_pred CHHHHHHHHHHHHhcCC
Q 012628 247 TPEQWEKIADVIQEKNH 263 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~ 263 (459)
..+.++++++++.|+
T Consensus 409 --~~~~~~~~~~~~~g~ 423 (562)
T 3bk2_A 409 --RHQMNFKWLAESMSR 423 (562)
T ss_dssp --HHHHHHHHHHHTSSS
T ss_pred --HHHHHHHHHHHHcCC
Confidence 667788888887665
No 441
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=20.92 E-value=82 Score=32.07 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 248 ~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
.++++++++-|+++|+-||.|-+|...+.
T Consensus 204 ~~~~~~lv~~~H~~Gi~VilD~V~NH~~~ 232 (617)
T 1m7x_A 204 RDDFRYFIDAAHAAGLNVILDWVPGHFPT 232 (617)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccC
Confidence 59999999999999999999999988754
No 442
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=20.80 E-value=1.9e+02 Score=26.27 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=45.8
Q ss_pred CcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 187 y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
|..+..++....++++.+-+.+ ....+...++++. ..-+++ ..|. ..+.++.++|.+.|+++|+.+.
T Consensus 52 ~~~~~~~l~~~~~D~V~i~tp~----~~h~~~~~~al~~---gk~v~~----EKP~--~~~~~~~~~l~~~a~~~g~~~~ 118 (331)
T 4hkt_A 52 VRTIDAIEAAADIDAVVICTPT----DTHADLIERFARA---GKAIFC----EKPI--DLDAERVRACLKVVSDTKAKLM 118 (331)
T ss_dssp ECCHHHHHHCTTCCEEEECSCG----GGHHHHHHHHHHT---TCEEEE----CSCS--CSSHHHHHHHHHHHHHTTCCEE
T ss_pred cCCHHHHhcCCCCCEEEEeCCc----hhHHHHHHHHHHc---CCcEEE----ecCC--CCCHHHHHHHHHHHHHcCCeEE
Confidence 4556666665556666665521 1345666666665 444444 3453 3456999999999999999888
Q ss_pred EeccC
Q 012628 267 FDVAY 271 (459)
Q Consensus 267 ~Deay 271 (459)
+.-.+
T Consensus 119 v~~~~ 123 (331)
T 4hkt_A 119 VGFNR 123 (331)
T ss_dssp ECCGG
T ss_pred Ecccc
Confidence 76553
No 443
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=20.78 E-value=1.7e+02 Score=25.98 Aligned_cols=50 Identities=10% Similarity=-0.069 Sum_probs=26.5
Q ss_pred cccchhHHHHHHHHHHHhCCCCEEEEcCC-CCcchH---HHhhhCCCCeeeeeee
Q 012628 157 GLSGTGSLRLAAALIERYFPGAKVLISSP-TWGNHK---NIFNDARVPWSEYRYY 207 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~~~~gd~Vlv~~p-~y~~~~---~~~~~~G~~v~~v~~~ 207 (459)
..||++++-... .......|.+|++..- .-.... ..++..|.++..+..+
T Consensus 34 VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 87 (280)
T 4da9_A 34 VTGGRRGIGLGI-ARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRAD 87 (280)
T ss_dssp EETTTSHHHHHH-HHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EecCCCHHHHHH-HHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 467777776641 1222447888877642 222222 2233456777777663
No 444
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=20.69 E-value=91 Score=31.75 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012628 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (459)
Q Consensus 247 s~~~l~~i~~l~~~~~~~ii~Deay~~~~~~ 277 (459)
+.++++++++-|+++|+-||.|-+|...+.+
T Consensus 201 ~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~ 231 (618)
T 3m07_A 201 TPDDFKAFIDAAHGYGLSVVLDIVLNHFGPE 231 (618)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred CHHHHHHHHHHHHHCCCEEEEeecCccCCCC
Confidence 3599999999999999999999999887643
No 445
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=20.67 E-value=1.8e+02 Score=26.92 Aligned_cols=20 Identities=5% Similarity=0.172 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhcCCeeEEe
Q 012628 249 EQWEKIADVIQEKNHIPFFD 268 (459)
Q Consensus 249 ~~l~~i~~l~~~~~~~ii~D 268 (459)
++.++|++.|+++|+.+.+-
T Consensus 132 ~ea~~l~~~a~~~g~~l~vg 151 (393)
T 4fb5_A 132 ADAERMLATAERSGKVAALG 151 (393)
T ss_dssp HHHHHHHHHHHHSSSCEEEC
T ss_pred HHHHHhhhhHHhcCCccccc
Confidence 55555555555555544443
No 446
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=20.65 E-value=2.5e+02 Score=23.97 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=46.0
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCC-CCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcC---CC
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSP-TWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PG 228 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p-~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~---~~ 228 (459)
..|+++++-.. +.. ....|.+|++..- .-..... .++..|.++..++.+ --|.+.+++.++.. ..
T Consensus 9 VTGas~giG~~--ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 9 VTGASRGIGRA--IAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRAD-----VANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp ETTCSSHHHHH--HHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHS
T ss_pred EECCCcHHHHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcC-----CCCHHHHHHHHHHHHHHcC
Confidence 46777777665 222 2347888777543 2222222 223346666666653 12556666555421 01
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 229 ~~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
+.-+++.+....+.+. ..+.++++++.++
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (246)
T 2uvd_A 82 QVDILVNNAGVTKDNLLMRMKEEEWDTVINT 112 (246)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 2335554433333222 2466777777654
No 447
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=20.46 E-value=2.7e+02 Score=24.73 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=45.5
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHH---HhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHc---CCCC
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~---~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 229 (459)
..|+++++-.. +.. +...|.+|++..-.-..... .++..|.++..+..+ --|.+.+++.++. .-.+
T Consensus 39 VTGas~gIG~a--ia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~ 111 (291)
T 3cxt_A 39 VTGASYGIGFA--IASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCD-----VTDEDGIQAMVAQIESEVGI 111 (291)
T ss_dssp EETCSSHHHHH--HHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCCEEEECC-----TTCHHHHHHHHHHHHHHTCC
T ss_pred EeCCCcHHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEec-----CCCHHHHHHHHHHHHHHcCC
Confidence 46777777654 222 23478888776433222222 223346566666552 1255666555543 1112
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012628 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (459)
Q Consensus 230 ~~~ii~~~p~NPTG~--~~s~~~l~~i~~l 257 (459)
.-+++.+....+.+. ..+.++++++.++
T Consensus 112 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 141 (291)
T 3cxt_A 112 IDILVNNAGIIRRVPMIEMTAAQFRQVIDI 141 (291)
T ss_dssp CCEEEECCCCCCCCCGGGSCHHHHHHHHHH
T ss_pred CcEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 335554333222221 2466777776654
No 448
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=20.44 E-value=64 Score=32.39 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=29.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012628 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (459)
Q Consensus 239 ~NPTG~~~s~~~l~~i~~l~~~~~~~ii~Deay~~~~~ 276 (459)
+..-|. .++++++++-|+++|+-||.|-+|...+.
T Consensus 161 ~~~~Gt---~~d~~~lv~~~h~~Gi~VilD~V~NH~~~ 195 (558)
T 3vgf_A 161 QNSYGG---PEGFRKLVDEAHKKGLGVILDVVYNHVGP 195 (558)
T ss_dssp CGGGTH---HHHHHHHHHHHHHTTCEEEEEECCSCCCS
T ss_pred ccccCC---HHHHHHHHHHHHHcCCEEEEEEeeccccC
Confidence 344454 59999999999999999999999887764
No 449
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=20.31 E-value=3.2e+02 Score=23.22 Aligned_cols=94 Identities=20% Similarity=0.164 Sum_probs=43.9
Q ss_pred cccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHhhhCC--CCeeeeeeecCCCCCCCHHHHHHHHHc---CCCCc
Q 012628 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDAR--VPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~~~~~G--~~v~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~ 230 (459)
..|+++++-.. +.. ....|.+|++..-.-.......+... .++..+..+ --|.+.+++.++. ...+.
T Consensus 11 VtGasggiG~~--~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~~~~~~i 83 (251)
T 1zk4_A 11 ITGGTLGIGLA--IATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHD-----SSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp ETTTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECC-----TTCHHHHHHHHHHHHHHHSSC
T ss_pred EeCCCChHHHH--HHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECC-----CCCHHHHHHHHHHHHHHhCCC
Confidence 46777777664 222 23468777776533222222222221 344455442 1255666555543 10123
Q ss_pred EEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012628 231 FILLHGCAHNPTG--IDPTPEQWEKIADV 257 (459)
Q Consensus 231 ~~ii~~~p~NPTG--~~~s~~~l~~i~~l 257 (459)
-+++++....+.+ ...+.+++++..++
T Consensus 84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (251)
T 1zk4_A 84 STLVNNAGIAVNKSVEETTTAEWRKLLAV 112 (251)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHh
Confidence 3555444333333 23566777766653
No 450
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=20.31 E-value=1e+02 Score=28.75 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=47.1
Q ss_pred CCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012628 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (459)
Q Consensus 186 ~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~i 265 (459)
.|..+..++..-..+++.+-+. . ....+...++++. +.-+++ --|.. .+.++.++|.++|+++|+.+
T Consensus 76 ~~~~~~~ll~~~~vD~V~I~tp--~--~~H~~~~~~al~a---GkhVl~----EKPla--~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 76 RIATAEEILEDENIGLIVSAAV--S--SERAELAIRAMQH---GKDVLV----DKPGM--TSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp EESCHHHHHTCTTCCEEEECCC--H--HHHHHHHHHHHHT---TCEEEE----ESCSC--SSHHHHHHHHHHHHTTCCCE
T ss_pred ccCCHHHHhcCCCCCEEEEeCC--h--HHHHHHHHHHHHC---CCeEEE----eCCCC--CCHHHHHHHHHHHHHcCCEE
Confidence 4556777766656666666542 1 1345666677775 444554 45543 34689999999999999988
Q ss_pred EEeccC
Q 012628 266 FFDVAY 271 (459)
Q Consensus 266 i~Deay 271 (459)
.+.-.+
T Consensus 143 ~v~~~~ 148 (361)
T 3u3x_A 143 SILYSE 148 (361)
T ss_dssp EEECHH
T ss_pred EEechH
Confidence 887653
No 451
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.28 E-value=5e+02 Score=24.49 Aligned_cols=72 Identities=7% Similarity=-0.002 Sum_probs=47.7
Q ss_pred CCEEEEcCCCCcchHHHhhhCCCCeeeeeeecCCCCCCCHHHHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012628 177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (459)
Q Consensus 177 gd~Vlv~~p~y~~~~~~~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~ii~~~p~NPTG~~~s~~~l~~i~~ 256 (459)
-.-.++.+|.-......+..+|+.+..|+..+ --|+.-|++.-+. .+++++- ||.. +.++|++.++
T Consensus 113 ~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~----~~N~pLL~~va~~--gKPViLS-------tGma-Tl~Ei~~Ave 178 (385)
T 1vli_A 113 KQVIFLSTVCDEGSADLLQSTSPSAFKIASYE----INHLPLLKYVARL--NRPMIFS-------TAGA-EISDVHEAWR 178 (385)
T ss_dssp TTCEEECBCCSHHHHHHHHTTCCSCEEECGGG----TTCHHHHHHHHTT--CSCEEEE-------CTTC-CHHHHHHHHH
T ss_pred cCCcEEEccCCHHHHHHHHhcCCCEEEECccc----ccCHHHHHHHHhc--CCeEEEE-------CCCC-CHHHHHHHHH
Confidence 34567777777777777777788888887642 2366655554443 2343333 7776 7899998888
Q ss_pred HHHhcC
Q 012628 257 VIQEKN 262 (459)
Q Consensus 257 l~~~~~ 262 (459)
.+.+.|
T Consensus 179 ~i~~~G 184 (385)
T 1vli_A 179 TIRAEG 184 (385)
T ss_dssp HHHTTT
T ss_pred HHHHCC
Confidence 888754
No 452
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=20.27 E-value=2.5e+02 Score=24.52 Aligned_cols=66 Identities=6% Similarity=-0.114 Sum_probs=34.1
Q ss_pred cCceEEeecccchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHH---hhhCCCCeeeeeeecCCCCCCCHHHHHHHHH
Q 012628 149 EQRVATVQGLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224 (459)
Q Consensus 149 ~~~i~~~~t~ggt~a~~l~~~~~~-~~~~gd~Vlv~~p~y~~~~~~---~~~~G~~v~~v~~~~~~~~~~d~e~l~~~i~ 224 (459)
.+.+++ .|+++++-.. +.. ....|.+|++.+-.-...... ++..|.++..+..+- -|.+.+++.++
T Consensus 31 ~k~vlI---TGasggIG~~--la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl-----~~~~~v~~~~~ 100 (272)
T 1yb1_A 31 GEIVLI---TGAGHGIGRL--TAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDC-----SNREDIYSSAK 100 (272)
T ss_dssp TCEEEE---ETTTSHHHHH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHH
T ss_pred CCEEEE---ECCCchHHHH--HHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeC-----CCHHHHHHHHH
Confidence 344554 6777776654 222 234788887765432222222 233466666666531 25566655554
No 453
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=20.23 E-value=2.1e+02 Score=25.42 Aligned_cols=94 Identities=10% Similarity=0.031 Sum_probs=46.8
Q ss_pred cccchhHHHHHHHHHHH-hCCCC---EEEEcCCCCcchHHHhhh-----CCCCeeeeeeecCCCCCCCHHHHHHHHHcCC
Q 012628 157 GLSGTGSLRLAAALIER-YFPGA---KVLISSPTWGNHKNIFND-----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227 (459)
Q Consensus 157 t~ggt~a~~l~~~~~~~-~~~gd---~Vlv~~p~y~~~~~~~~~-----~G~~v~~v~~~~~~~~~~d~e~l~~~i~~~~ 227 (459)
..|+++++-.. +... ...|. .|++..-.-.......+. .|.++..+..+- -|.+.+++.++...
T Consensus 38 VTGas~GIG~a--ia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 38 ITGASAGIGKA--TALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDI-----TQAEKIKPFIENLP 110 (287)
T ss_dssp EESTTSHHHHH--HHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCT-----TCGGGHHHHHHTSC
T ss_pred EecCCChHHHH--HHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCC-----CCHHHHHHHHHHHH
Confidence 46677776654 2222 23343 777665443333332221 256677666631 25666766666421
Q ss_pred ---CCcEEEEeCCCCCC-CC--CCCCHHHHHHHHHH
Q 012628 228 ---GGSFILLHGCAHNP-TG--IDPTPEQWEKIADV 257 (459)
Q Consensus 228 ---~~~~~ii~~~p~NP-TG--~~~s~~~l~~i~~l 257 (459)
.+.-+++.+..... .+ ...+.++|+++.++
T Consensus 111 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~v 146 (287)
T 3rku_A 111 QEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDT 146 (287)
T ss_dssp GGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred HhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHH
Confidence 12335553333221 22 23477888887765
No 454
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.09 E-value=3.5e+02 Score=21.85 Aligned_cols=32 Identities=3% Similarity=-0.178 Sum_probs=22.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012628 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (459)
Q Consensus 228 ~~~~~ii~~~p~NPTG~~~s~~~l~~i~~l~~~~~~~ii 266 (459)
++..+++++. +|.. .+..++++.++++|+.+|
T Consensus 87 ~~d~~i~iS~----sG~t---~~~~~~~~~ak~~g~~vi 118 (187)
T 3sho_A 87 PTDLMIGVSV----WRYL---RDTVAALAGAAERGVPTM 118 (187)
T ss_dssp TTEEEEEECC----SSCC---HHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeC----CCCC---HHHHHHHHHHHHCCCCEE
Confidence 4666666643 4555 778889999999876554
Done!