Query 012629
Match_columns 459
No_of_seqs 552 out of 1517
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 13:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 2.1E-31 7.3E-36 257.3 28.2 313 54-393 43-388 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.5E-31 1.9E-35 255.4 28.4 370 36-431 23-431 (451)
3 4gc0_A D-xylose-proton symport 100.0 1.9E-27 6.4E-32 233.2 27.5 343 37-395 8-414 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.5E-27 1.9E-31 229.8 26.1 315 67-395 49-430 (491)
5 2gfp_A EMRD, multidrug resista 99.9 4.4E-28 1.5E-32 229.2 11.2 317 47-395 10-334 (375)
6 2cfq_A Lactose permease; trans 99.9 4.1E-25 1.4E-29 211.6 12.1 355 44-429 14-395 (417)
7 2xut_A Proton/peptide symporte 99.9 8E-23 2.7E-27 201.9 19.8 169 40-216 15-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.1 8.3E-10 2.8E-14 106.2 16.0 152 57-216 272-431 (451)
9 3o7q_A L-fucose-proton symport 99.1 4.5E-10 1.6E-14 107.7 13.3 114 267-395 45-161 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.1 3.5E-10 1.2E-14 110.2 12.6 160 248-427 14-190 (491)
11 2xut_A Proton/peptide symporte 98.9 6.7E-09 2.3E-13 102.1 13.8 161 248-428 13-193 (524)
12 2gfp_A EMRD, multidrug resista 98.9 1.3E-08 4.6E-13 95.3 12.7 141 268-428 20-169 (375)
13 2cfq_A Lactose permease; trans 98.8 9.2E-09 3.1E-13 97.9 9.5 145 71-222 258-403 (417)
14 4gc0_A D-xylose-proton symport 98.6 7.2E-08 2.5E-12 93.8 9.3 169 57-227 297-471 (491)
15 2g9p_A Antimicrobial peptide l 37.9 5.7 0.00019 19.0 -0.3 13 92-104 3-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.1e-31 Score=257.30 Aligned_cols=313 Identities=13% Similarity=0.146 Sum_probs=219.7
Q ss_pred hhccchhhhhhhccCCCccchhhHHHHHHHHhhhhhccccchhcccCcchhhHHHHHHHHHHH-HH---hhCCchHHHHH
Q 012629 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMI 129 (459)
Q Consensus 54 ~~~~p~l~~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~-l~---~~~~~~~~l~~ 129 (459)
....|++|.+.+++|+++.++|++.+...+...++.+++|+++||+|||++++.+.++.+++. +. ++++|++.+++
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 444888899999999999999999999999889999999999999999999999999999875 66 78899999999
Q ss_pred HHHHHHhHhhhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCc-------------
Q 012629 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG------------- 196 (459)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~------------- 196 (459)
.|+++|++.+...+...+ ++.|+.+++++..... ... .+..+|..+++.+++.+.+.....
T Consensus 123 ~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~-~~~----~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLN-LAQ----TFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHH-HHH----HHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred HHHHHHhhHHHhhhhHHH-HHHHHcCchhHHHHHH-HHH----HHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence 999999999999998866 8888833333322111 222 234455556666666655212222
Q ss_pred -----------cccchhhHHHHHHHHHHHHH-hhccccCCCCCchhhHHHHHHhhhHHhcchhHHHHHHHHHHhhhhhhh
Q 012629 197 -----------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY 264 (459)
Q Consensus 197 -----------w~~~f~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (459)
||++|++.+.+..+...+.. ...||++++++++++ .++.++..++++++|+++...+...+......
T Consensus 197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (438)
T 3o7q_A 197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-QGSFSASLSRLARIRHWRWAVLAQFCYVGAQT 275 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-ccchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 78888766665555444333 234554433212111 12223455677888888887777666655544
Q ss_pred hhhhhhcccc-CCCccCCch---hHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHhhhccCCC
Q 012629 265 TFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS 340 (459)
Q Consensus 265 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (459)
. ...+.|.| .++.++.+. +.......++.+++.++.+++.||++||+ .+..+..+..+...........
T Consensus 276 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 348 (438)
T 3o7q_A 276 A-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLISAFAGGH---- 348 (438)
T ss_dssp H-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHCCHH----
T ss_pred H-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHcCCc----
Confidence 4 57788988 777767654 56777778889999999999999999887 3444444444433333222221
Q ss_pred CCCCCCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhhhhhhhhhhh
Q 012629 341 NVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR 393 (459)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 393 (459)
.......+.+++.+..+|..+++..|.+|++ ++++.++..
T Consensus 349 ------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 349 ------------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp ------------HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH
Confidence 3345567788888888999999999999977 666655444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.5e-31 Score=255.38 Aligned_cols=370 Identities=11% Similarity=0.044 Sum_probs=246.7
Q ss_pred chhhHHHHHHHHHHHHhhhhc----cchhhhhhhccCCCccchhhHHHHHHHHhhhhhccccchhcccCcchhhHHHHHH
Q 012629 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (459)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~p~l~~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~~~~~~~~ 111 (459)
++.++..+...++..+...++ .+++|.+.+++ .+..++|++.+...+...++.+++|+++||+|||+++..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344455555555555544443 78888999999 9999999999999998889999999999999999999999999
Q ss_pred HHHHH-HHhh----CCchHHHHHHHHHHHhHhhhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 012629 112 YILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (459)
Q Consensus 112 ~~~~~-l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 186 (459)
.+++. ++++ ++|++.++++|+++|++.+...+...+ ++.|..++.++..... ....+..+|..+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~-----~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVS-----VWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHH-----HHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 99986 6688 899999999999999999999998876 8888733322222111 22234445666666666
Q ss_pred hhcccccCCccccchhhHHHHHHHHHHHHHhhccccCCCCC-----ch-hh-------HHH-H--HHh-hhHHhcchhHH
Q 012629 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS-----ES-KD-------LLT-Q--FRG-AAVAIASDEKI 249 (459)
Q Consensus 187 ~~l~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~-~~-------~~~-~--~~~-~~~~~~~~~~~ 249 (459)
+.+.+..+ +||..|++.+++.++..++.....||++++.+ +. ++ ..+ + .++ ..++.+++|++
T Consensus 176 ~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 176 LLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence 66554333 26788888887777666555556666433211 00 00 000 0 000 13566778888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccccCCCccCCch---hHHHHHHHHHHHHHHHHHHHHhhcC--CCCcchhHHHHHHHHH
Q 012629 250 ALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRVESYMQIVFVVSS 324 (459)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~l~~~~~~~~ 324 (459)
+...+...+.....+. ...+.|.|.++..+.+. +.......++.+++.++.+++.||+ +||+ .+..+..+..
T Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--~~~~~~~~~~ 331 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hHHHHHHHHH
Confidence 8877777666666555 57889999988777755 5677788889999999999999999 7776 2333333333
Q ss_pred -HHHHHHHHhhhccCCCCCCCCCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhhhhhhhhhhhhhh---h---
Q 012629 325 -VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL---N--- 397 (459)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~---~--- 397 (459)
+.......... .+ .+......++.|++.+...+..+.+..|.+|++.|+++.|+.+... +
T Consensus 332 ~~~~~~~~~~~~---------~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 332 TIATIVYWMNPA---------GN----PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp HHHHHHTTSCCT---------TC----HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---------cC----HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence 22222111110 00 1345566777788888888888999999999999999998876632 2
Q ss_pred -HHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHh
Q 012629 398 -IFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQR 431 (459)
Q Consensus 398 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (459)
+.+.+.+.+.. ++...+..+++..++..+...
T Consensus 399 ~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 399 ASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHHSS--CSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHH
Confidence 22334444443 344455555444444444333
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.9e-27 Score=233.15 Aligned_cols=343 Identities=14% Similarity=0.075 Sum_probs=197.7
Q ss_pred hhhHHHHHHHHHHHHhhhhc----cchhhhhhhccCC--------CccchhhHHHHHHHHhhhhhccccchhcccCcchh
Q 012629 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGF--------GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA 104 (459)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~p~l~~~~~~~~~--------s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~ 104 (459)
++.+.+.++..+..+..++| ++.+|.+.++++. +.++.|++.+..++...++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 44444444444444445554 5566676665533 23445677777777777888899999999999999
Q ss_pred hHHHHHHHHHHH-HHh------------------hCCchHHHHHHHHHHHhHhhhhhhhhhhhhhhhccccccchhhHHH
Q 012629 105 CVTYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSI 165 (459)
Q Consensus 105 ~~~~~~~~~~~~-l~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~ 165 (459)
+.++.+++.++. +++ +++|+++++++|+++|++.|...+.... +++|..++.++.....
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~p~~~rg~~~~- 165 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELAPAHIRGKLVS- 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCGGGHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHhhhhhHH-
Confidence 999999999875 556 4789999999999999999999999866 9999844333332111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcc--cccCCccccchhhHHHHHHHHHHHHHhhccccC------CCCCchhhHHHHHH
Q 012629 166 TFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENY------GDPSESKDLLTQFR 237 (459)
Q Consensus 166 ~~~~~~~~g~~~g~~~~~~l~~~l~--~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 237 (459)
........|..++..++........ ....+.||.++....+..++..+.. +..||++ ++.+++++..++..
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 2222333333333333222222111 0123457777776666655544443 4677753 22222211111100
Q ss_pred h----------------------hhHHhcchhHHHHHHHHHHhhhhhhhhhhhhhccccCCCccCCc--hhHHHHHHHHH
Q 012629 238 G----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP--HGFIFATFMLA 293 (459)
Q Consensus 238 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 293 (459)
. ......+.++.........+.+...+..+..|.|.+.++....+ .........+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI 324 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence 0 00111222333333333344444444444556666554332222 13444566678
Q ss_pred HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccccchhHHHHHHHHHhhhcch-hhHH
Q 012629 294 SMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF-WPSI 372 (459)
Q Consensus 294 ~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~ 372 (459)
.+++.++.+++.||+|||+. +..+.....+.+........... + .+..++...++..+++.. .|..
T Consensus 325 ~~~~~~~~~~l~dr~Grr~~--~~~~~~~~~~~~~~l~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4gc0_A 325 NLTFTVLAIMTVDKFGRKPL--QIIGALGMAIGMFSLGTAFYTQA------P-----GIVALLSMLFYVAAFAMSWGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHCSHHH--HHHHHHHHHHHHHHHHHHHHTTC------C-----HHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHhhcCcch--hccchHHHHHHHHHHHHHHhccc------c-----hHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999983 44444444444443333222210 0 023333344444443333 4778
Q ss_pred HHHHhccCChhhhhhhhhhhhhh
Q 012629 373 MKMRSQYIPEEARSTIMNFFRIP 395 (459)
Q Consensus 373 ~~~~~~~~p~~~r~~~~g~~~~~ 395 (459)
+.+.+|.+|++.|+++.|+.+..
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHHHHHHHHHH
Confidence 89999999999999999887653
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=5.5e-27 Score=229.82 Aligned_cols=315 Identities=16% Similarity=0.094 Sum_probs=195.7
Q ss_pred cCCCccchhhHHHHHHHHhhhhhccccchhcc-cCcchhhHHHHHHHHHHH-HHhhCCchHHHHHHHHHHHhHhhhhhhh
Q 012629 67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA 144 (459)
Q Consensus 67 ~~~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~~~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (459)
+|.+..+.|++.+...+...++.+++|+++|| +|||+++..+.++.+++. ++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999888999999999999 899999999999999986 6688999999999999999999999998
Q ss_pred hhhhhhhhcccccc-chhhHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCccccchhhHHHHHHHHHHHHHhhcccc-
Q 012629 145 FESWLVAEHNKRGF-EQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN- 222 (459)
Q Consensus 145 ~~~~~i~~~~~r~~-~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~- 222 (459)
..+ ++.|..+++. ..+.. .+ ....+..+|..++|.+++.+.++ ++||..|++.++..++..+......|+.
T Consensus 129 ~~~-~~~~~~~~~~~~r~~~---~~-~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 129 VST-LVGTLYDEHDRRRDAG---FS-IFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHH-HHHHHSSSCTTHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHcCcccccceee---eh-HHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 866 8888622221 11111 11 12234456666666777776654 4567778887666655544433222221
Q ss_pred --C-CCCCc--hhhHHHHHHhh---------------------------------------------hH-------Hhcc
Q 012629 223 --Y-GDPSE--SKDLLTQFRGA---------------------------------------------AV-------AIAS 245 (459)
Q Consensus 223 --~-~~~~~--~~~~~~~~~~~---------------------------------------------~~-------~~~~ 245 (459)
+ +++++ .++..++..+. .+ +..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 1 11111 11111110000 00 0001
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhccccCCCccCC---chhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchh---HHHH
Q 012629 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI---PHGFIFATFMLASMLGSSLASRLMARSPPRVESY---MQIV 319 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~---l~~~ 319 (459)
....+.......+.... +.....+.|.+.++..+. +.+.......+..+++.++.+++.||++||+... +..+
T Consensus 282 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 282 VVSYIPLFIAAVLFWAI-EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp CTTHHHHHHHHHHHHHH-HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 11122222222222222 222355556666544433 3477778888888889999999999999886311 1133
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhhhhhhhhhhhhh
Q 012629 320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (459)
..+.+++............+ ......+......++.+++.+...+..++++.|.+|++.|+++.|+.+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 430 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGT------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCC------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33333333333322211100 00011235667788888998888899999999999999999999887763
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=4.4e-28 Score=229.15 Aligned_cols=317 Identities=13% Similarity=0.058 Sum_probs=223.9
Q ss_pred HHHHHhhhhccchhhhhhhccCCCccchhhHHHHHHHHhhhhhccccchhcccCcchhhHHHHHHHHHHH-HHhhCCchH
Q 012629 47 SLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK 125 (459)
Q Consensus 47 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~-l~~~~~~~~ 125 (459)
++.........|.+|.+.+++|.++++.|++.+...+...+++++.|+++||+|||+++..+..+.+++. +.++++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 89 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH
Confidence 3334455555888889999999999999999999999888999999999999999999999999999876 668889999
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhc---cccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCccccchh
Q 012629 126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD 202 (459)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 202 (459)
.+++.|+++|++.+...+...+ ++.|. ++|++..+.. ..+..+|..+++.+++.+.++ ++||..|.
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~ 158 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMART-LPRDLYERTQLRHANSLL--------NMGILVSPLLAPLIGGLLDTM--WNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHH--------HHHHHHHHHHHHHHHHHSSCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHh--ccHHHHHH
Confidence 9999999999999999888866 77776 4455544422 223446666666777776644 35678888
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCchhhHHHHHHhhhHHhcchhHHHHHHHHHHhhhhhhhhhhhhhccccCCCccCCc
Q 012629 203 AAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP 282 (459)
Q Consensus 203 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (459)
+.+++.++..+......||++++++++++ ..+..++.+|+|+++...+...+....... ...+.|.+.++..+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 233 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLS 233 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCccccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC
Confidence 77777666555444566776544332211 123445667788888777666666655554 5788999988766654
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH-HHHHHHHHHHhhhccCCCCCCCCCccccchhHHHHH
Q 012629 283 H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVV-SSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGF 358 (459)
Q Consensus 283 ~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (459)
. +.......++.+++.++.+++.||.++ + ...+... ................ ..+...+..
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 298 (375)
T 2gfp_A 234 SMTVSILFILPIPAAFFGAWFAGRPNKRFST-L---MWQSVICCLLAGLLMWIPDWFGVM-----------NVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H---HHHHHHHHHHTSSSSSHHHHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHhhhccc-----------cHHHHHHHH
Confidence 4 566677778888888888888888765 2 2222222 1111111111110000 013455667
Q ss_pred HHHHhhhcchhhHHHHHHhccCChhhhhhhhhhhhhh
Q 012629 359 CTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (459)
Q Consensus 359 ~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (459)
++.+++.+...+...++..|..| +.|+++.|+.+..
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 78888888888999999999998 7899999888764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=4.1e-25 Score=211.61 Aligned_cols=355 Identities=13% Similarity=0.061 Sum_probs=193.6
Q ss_pred HHHHHHHHhhhhccchhhhhh-hccCCCccchhhHHHHHHHHhhhhhccccchhcccCcchhhHHHHHHHHHH---HH-H
Q 012629 44 LVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS---CI-T 118 (459)
Q Consensus 44 ~~~~~~~~~~~~~~p~l~~~~-~~~~~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~~~~~~~~~~~~---~l-~ 118 (459)
...++...+.....|++|... +++|.|+.+.|.+.+...+...++++++|+++||+|||++++.+..+.++. .. .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T 2cfq_A 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555577777654 568999999999999998888899999999999999999999988776542 11 1
Q ss_pred hhCCch-HHHHHHHHHHHhHhhhhhhhhhh---hhhhhc-cccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 012629 119 KHSPQY-KILMIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF 193 (459)
Q Consensus 119 ~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~---~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~ 193 (459)
.+++.. ..+...+.+.|++.+...+...+ .+..|. ++++...+..+. +..+|..++|.+++++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~g~~~~~~l~~~l~~-- 163 (417)
T 2cfq_A 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM--------FGCVGWALGASIVGIMFT-- 163 (417)
T ss_dssp THHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSS--------STTTHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHH--------HHHHHHHHHHHHHHHHHH--
Confidence 222211 11234455555554444333222 133332 222332222211 233455555666666553
Q ss_pred CCccccchhhHHHHHHHHHHHHHhhccccCCCC--Cch-h-hHHHHHHhhhHHhcchhHHHHHHHHHHhhhhhhhhhhhh
Q 012629 194 SLGPVAPFDAAACFLAIGMVIILSSWTENYGDP--SES-K-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (459)
Q Consensus 194 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (459)
++|+..|++.++..++..+......||++++. +++ + +..+...++.++++++|+++............ +.....
T Consensus 164 -~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 241 (417)
T 2cfq_A 164 -INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQ 241 (417)
T ss_dssp -HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred -hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHH
Confidence 34667777766554433333322223321110 000 0 00000012334567778877655443333322 222334
Q ss_pred hccccCCCccCCc------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 012629 270 WTPALSPNDEEIP------HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK 343 (459)
Q Consensus 270 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (459)
+.|.|..+.++.. .+.......++.+++.++.+++.||+|||+ .+..+..+.++..........
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~--~l~~~~~~~~~~~~~~~~~~~-------- 311 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSVRIIGSSFATS-------- 311 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHHTTCCS--------
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHHHHHHHHHhcc--------
Confidence 5566554333211 145566666788889999999999999887 243344333333222211111
Q ss_pred CCCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhhhhhhhhhh-hhh------hhHHHHHhhhccCcchhHHHH
Q 012629 344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIP------LNIFVCVVLYNVDAFPITVMF 416 (459)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~------~~~~~~~~l~~~~~~~~~~~~ 416 (459)
.+..++...+.+++.+...+..+.+..|.+|++.|+++.++. +.. .++.+++.+.+. .++...+
T Consensus 312 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~--~g~~~~f 382 (417)
T 2cfq_A 312 -------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--IGFQGAY 382 (417)
T ss_dssp -------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH--SHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh--cCcHHHH
Confidence 123344455556666656667788999999999999988774 432 333444444443 3455555
Q ss_pred HHHHHHHHHHHHH
Q 012629 417 GMCSIFLLVASVL 429 (459)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (459)
..+++..++..+.
T Consensus 383 ~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 383 LVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.90 E-value=8e-23 Score=201.88 Aligned_cols=169 Identities=11% Similarity=0.145 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhhhhccchhh-hhhhccC------CCccchhhHHHHHHHHhhhhhccccchhccc-CcchhhHHHHHH
Q 012629 40 NNYLLVYSLMMAGDWLQGPYVY-YLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLT 111 (459)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~p~l~-~~~~~~~------~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~~~~~~~~ 111 (459)
+.+....++..++.....+.++ .+.+++| .+..+.|++.+...+...++.+++|+++||+ |||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3344444444444433334444 3557889 9999999999998888889999999999999 999999999999
Q ss_pred HHHHH-HHhhCC-chHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---ccccchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 012629 112 YILSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (459)
Q Consensus 112 ~~~~~-l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 186 (459)
.+++. +.++++ +++.+++.|+++|++.+...+...+ ++.|.. +|++..+.. + ....+..+|..++|.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~-~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAF----D-MFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHH----H-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHH----H-HHHHHHHHHHHHHHHHH
Confidence 98876 668888 9999999999999999999888866 888873 233223321 1 12334556667777777
Q ss_pred hhcccccCCccccchhhHHHHHHHHHHHHH
Q 012629 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (459)
Q Consensus 187 ~~l~~~~~~~w~~~f~~~~~~~~i~~~~~~ 216 (459)
+.+.+. ++|+..|++.+++.++..+...
T Consensus 169 ~~l~~~--~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 169 PLLLKN--FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp THHHHT--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 776654 4567788887777665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.14 E-value=8.3e-10 Score=106.22 Aligned_cols=152 Identities=12% Similarity=0.011 Sum_probs=103.6
Q ss_pred cchhhhhhhc-cCCCccchhhHHHHHHHHhhhhhccccchhccc--CcchhhHHHHHHHH-HHHH-HhhC--CchHHHHH
Q 012629 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSCI-TKHS--PQYKILMI 129 (459)
Q Consensus 57 ~p~l~~~~~~-~~~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~~~~~~~~~~-~~~l-~~~~--~~~~~l~~ 129 (459)
..++|.+.++ +|.+..+.+.+.+...+...++.++.|++.||+ |||+.+..+..+.. ++.+ ..+. ++.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 4555666655 899999999888888887888888999999999 99999888877776 5553 3454 36777888
Q ss_pred HHHHHHhHhhhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHH-HHHHhhhhhhhcccccCCccccchhhHHHHH
Q 012629 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGL-VAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (459)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~ 208 (459)
..++.|++.+...+.... ++.|..++..+.. ..+.... ...+ |..+++.+.+.+.+..+ |+..|++.+++.
T Consensus 352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~----~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~ 423 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGT----AAGFTGL-FGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGS 423 (451)
T ss_dssp HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHH-HHHHHhchhhhhh----HHHHHHH-HHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 888999988888777655 7777633322222 2221222 2334 66666677777665544 566777776666
Q ss_pred HHHHHHHH
Q 012629 209 AIGMVIIL 216 (459)
Q Consensus 209 ~i~~~~~~ 216 (459)
++..+...
T Consensus 424 ~~~~~~~~ 431 (451)
T 1pw4_A 424 ILAVILLI 431 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.12 E-value=4.5e-10 Score=107.67 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=82.6
Q ss_pred hhhhccccCCCccCCch---hHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 012629 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK 343 (459)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (459)
.....|.+.+ .++.+. +.+.+...++..++.++.|+++||+|||+ .+..+..+..+...+.......
T Consensus 45 ~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~--~l~~~~~~~~~~~~~~~~~~~~------- 114 (438)
T 3o7q_A 45 NDILLPQFQQ-AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA--GIITGLFLYALGAALFWPAAEI------- 114 (438)
T ss_dssp HHHHHHHHHH-HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH--HHHHHHHHHHHHHHHHHhcccc-------
Confidence 4445565443 345543 77888888999999999999999999987 3555555555554443211111
Q ss_pred CCCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhhhhhhhhhhhhh
Q 012629 344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (459)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (459)
++ .+.+++..++.|++.+...+...+++.|.+|+++|+++.++.+..
T Consensus 115 -~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 115 -MN----YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp -TC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred -cc----HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence 11 146677889999999999999999999999999999988877763
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.12 E-value=3.5e-10 Score=110.24 Aligned_cols=160 Identities=12% Similarity=0.029 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhccccCCCc-----cCCch---hHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchhHHH
Q 012629 248 KIALLGAIQSLFEGSMYTFVFLWTPALSPND-----EEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQI 318 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~l~~ 318 (459)
..+.......+.....+. ...+.+.|.++. ++.+. +...+...++..++.++.|+++|| +|||+ .+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~--~~~~ 90 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYG-MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP--AVFW 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH--HHHH
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH--HHHH
Confidence 344444444444444444 456677777665 67655 677788889999999999999999 89987 3555
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhh--hhhhhhhhhhh-
Q 012629 319 VFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIP- 395 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~- 395 (459)
+..+..+.........+. +.+++..++.|++.+...+...+++.|.+|++. |+++.++.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 155 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGI 155 (491)
T ss_dssp HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHH
Confidence 555544444443322111 366777888999999999999999999999988 66666665442
Q ss_pred -----hhHHHHHhhhccCcchhHHHHHHHHHHHHHHH
Q 012629 396 -----LNIFVCVVLYNVDAFPITVMFGMCSIFLLVAS 427 (459)
Q Consensus 396 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (459)
.++.+++.+.+. .++...+...++..++..
T Consensus 156 ~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 156 NLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH
Confidence 333444444443 345555555544444333
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.95 E-value=6.7e-09 Score=102.06 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhccccCCCccC------Cch---hHHHHHHHHHHHHHHHHHHHHhhcC-CCCcchhHH
Q 012629 248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE------IPH---GFIFATFMLASMLGSSLASRLMARS-PPRVESYMQ 317 (459)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~l~ 317 (459)
+++.......+.....+. ...+.|.|+++.++ .+. +.+.+...++..++.++.|+++||+ |||+ .+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~--~~~ 89 (524)
T 2xut_A 13 QIPYIIASEACERFSFYG-MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN--TIL 89 (524)
T ss_dssp CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH
Confidence 334444444444444444 45566666655555 433 7788888899999999999999999 9987 344
Q ss_pred HHHHHHHHHHHHHHHhh-hccCCCCCCCCCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhhhhhhhhh---hh
Q 012629 318 IVFVVSSVSLLLPIVTS-FLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF---FR 393 (459)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~ 393 (459)
.+..+..+......+.. .. +.+++..++.|++.+...+...+++.|.+|++.|++..+. .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 154 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFY 154 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHH
Confidence 55444444444433322 11 3566778888999999999999999999999999765544 43
Q ss_pred hh------hhHHHHHhhhccCcchhHHHHHHHHHHHHHHHH
Q 012629 394 IP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASV 428 (459)
Q Consensus 394 ~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (459)
.. .++.+++.+.+. .++...+.+.++..++..+
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 155 FTINFGSFFASLSMPLLLKN--FGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHHTSTHHHHT--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHH
Confidence 32 222333333333 3455555555554444333
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.88 E-value=1.3e-08 Score=95.26 Aligned_cols=141 Identities=8% Similarity=0.070 Sum_probs=95.9
Q ss_pred hhhccccCCCccCCch---hHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 012629 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (459)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (459)
....|.+.+ +++.+. +...+...++..++.++.|+++||+|||+. +..+.....+.........+.
T Consensus 20 ~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~-------- 88 (375)
T 2gfp_A 20 IPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV--ILVGMSIFMLATLVAVTTSSL-------- 88 (375)
T ss_dssp HHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC--CHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHHHhccH--------
Confidence 444555544 345543 677788889999999999999999999983 555555555555554444333
Q ss_pred CCccccchhHHHHHHHHHhhhcchhhHHHHHHhccCChhhhhhhhhhhhhh------hhHHHHHhhhccCcchhHHHHHH
Q 012629 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGM 418 (459)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~ 418 (459)
+.+++..++.|++.+...+...+++.|..|+++|+++.++.+.. .++.+++.+.+. .++...+..
T Consensus 89 -------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~ 159 (375)
T 2gfp_A 89 -------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM--WNWRACYLF 159 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH--HHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--ccHHHHHHH
Confidence 36677788889999988999999999999999999998887763 222333333322 355555655
Q ss_pred HHHHHHHHHH
Q 012629 419 CSIFLLVASV 428 (459)
Q Consensus 419 ~~~~~~~~~~ 428 (459)
.++..++..+
T Consensus 160 ~~~~~~~~~~ 169 (375)
T 2gfp_A 160 LLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.82 E-value=9.2e-09 Score=97.93 Aligned_cols=145 Identities=10% Similarity=0.028 Sum_probs=94.8
Q ss_pred ccchhhHHHHHHHHhhhhhccccchhcccCcchhhHHHHHHHHHHH-HHhhCCchHHHHHHHHHHHhHhhhhhhhhhhhh
Q 012629 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149 (459)
Q Consensus 71 ~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (459)
..+.+...+...+...++.++.|+++||+|||+++..+..+.+++. +.++.++.+.+++..++.+++.+...+.... +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666666555566677789999999999999998888877765 4577788888888888888877666665544 7
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCccccchhhHHHHHHHHHHHHHhhcccc
Q 012629 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN 222 (459)
Q Consensus 150 i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 222 (459)
++|..+.+.+.. .++.....+..+|..++|.+++.+.+.. ++...|...+++.++..+......||+
T Consensus 337 ~~~~~p~~~~g~----~~g~~~~~~~~lg~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 337 ITSQFEVRFSAT----IYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHSCHHHHHH----HHHHHHTTTHHHHHHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHCCHHHHHH----HHHHHHHHHHhHHHHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 777633322222 1222223344567777777777766543 455667777777666665555445543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.63 E-value=7.2e-08 Score=93.77 Aligned_cols=169 Identities=14% Similarity=0.023 Sum_probs=89.6
Q ss_pred cchhhhhhhccCCCccchhhHHHHHHHHhhhhhccccchhcccCcchhhHHHHHHHHHHH-HHh--h-CCc-hHHHHHHH
Q 012629 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK--H-SPQ-YKILMIGR 131 (459)
Q Consensus 57 ~p~l~~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~~~~~~~~~~~~~-l~~--~-~~~-~~~l~~~r 131 (459)
..+.+.+.++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++. ..+ . ..+ ....++.-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 334456667777776666555455555566777789999999999999998888777653 222 1 222 22222222
Q ss_pred HHHHhHhhh-hhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCccccchhhHHHHHHH
Q 012629 132 ILGGIATSL-LFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (459)
Q Consensus 132 ~l~G~~~~~-~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~i 210 (459)
++...+.+. ..+.... +.+|.-+...+...... ......++..+++.+.|.+.........+++...|++.+.+.++
T Consensus 377 ~~~~~~~~~~~~~~~~~-~~~E~fPt~~R~~~~g~-~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWV-LLSEIFPNAIRGKALAI-AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHTTTTHHHHH-HHHHSSCTTTHHHHHHH-HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH-HHHHhCCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 222222222 2233323 77887333222221111 11122223333333333332211111122344567777778888
Q ss_pred HHHHHHhhccccCCCCC
Q 012629 211 GMVIILSSWTENYGDPS 227 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~ 227 (459)
..++.++.+||++++.-
T Consensus 455 ~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 455 AALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHCCCCTTCCH
T ss_pred HHHHHHheecCCCCCCH
Confidence 77777788999987653
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=37.88 E-value=5.7 Score=19.02 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=10.3
Q ss_pred ccchhcccCcchh
Q 012629 92 VGSLADKQGRKRA 104 (459)
Q Consensus 92 ~G~l~Dr~Grr~~ 104 (459)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889999864
Done!