BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012630
         (459 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
           (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
 pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
           (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
 pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
           (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
          Length = 816

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 114 RPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173
           RP  FT  YT  P K   W  DGK +     +  +E++        +GM     R DR S
Sbjct: 359 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESV----KKEDKGMYQCFVRNDRES 414

Query: 174 TLYWVETQDGG 184
                E + GG
Sbjct: 415 AEASAELKLGG 425


>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
 pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
 pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
 pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
           Deinococcus Radiodurans
          Length = 629

 Score = 28.9 bits (63), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 170 DRPSTLYWVETQDGGAAKVEVSPRDIIYTQPA--EPVEGEEPEILHKLDLRFRGVSWCDD 227
           D P+ L+ V T+  G +  E  P  I +  PA  +P  GE         +     SW   
Sbjct: 278 DGPTILHIVTTKGKGLSYAEADP--IYWHGPAKFDPATGEY--------VPSSAYSWSAA 327

Query: 228 SLALVQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGL 273
               V E W KT   RT++++P  ++ + L+ F R     Y D G+
Sbjct: 328 FGEAVTE-WAKT-DPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGI 371


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,082,079
Number of Sequences: 62578
Number of extensions: 671384
Number of successful extensions: 1593
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1591
Number of HSP's gapped (non-prelim): 6
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)