BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012630
(459 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis
thaliana GN=GEP PE=2 SV=2
Length = 960
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/457 (70%), Positives = 391/457 (85%), Gaps = 1/457 (0%)
Query: 3 LNAVFGSFVWVNSSVLLVYTIPLSRGDSPKKSLVPFGPKIQSNEQQNVIQNRYTEGLLKD 62
LNA+F SFVW+++S LLV TIP SRG+ PKK LVP GPK SNE + V+Q R + LLKD
Sbjct: 256 LNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPSGPKTLSNETKTVVQVRTFQDLLKD 315
Query: 63 EFDEYLFEHYTTTQLVLATLDGTVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSY 122
E+D LF++Y ++QLVLA+LDGTVKE G PA+YT+++PS D KY+L++S+ RPYSF V
Sbjct: 316 EYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSLDPSTDHKYLLVSSLHRPYSFIVPC 375
Query: 123 TKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQD 182
+FP+KV+VWT DG+FVRQLC+LPL E+IPIA NSVR+GMR I+WRAD+PSTL W ETQD
Sbjct: 376 GRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSVRKGMRSINWRADKPSTL-WAETQD 434
Query: 183 GGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQT 242
GG AK+EVSPRDI+Y Q AEP+ GEEPE+LHKLDLR+ G+SWCDD+LALV E+W+KT +T
Sbjct: 435 GGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLRYGGISWCDDTLALVYESWYKTRRT 494
Query: 243 RTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLN 302
RTW+ISPGS D +P ILFDRSSEDVYSDPG M+R++ GT VIAKIKKEND+GTY+LLN
Sbjct: 495 RTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRRTDAGTYVIAKIKKENDEGTYVLLN 554
Query: 303 GRGATPEGDVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTS 362
G GATP+G+VPFLDLF+INTG+KERIWESDKEKY+ET VAL DQ GD+ + +LKILTS
Sbjct: 555 GSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFETVVALMSDQKEGDLKMEELKILTS 614
Query: 363 KESKTEITQYWIQSWPHKKCRQITDFPHPYPLLSTLQKELIKYQRKDGVQLTAKLYLPTG 422
KESKTE TQY +Q WP +K +QIT+FPHPYP L++LQKE+I+YQRKDGVQLTA LYLP G
Sbjct: 615 KESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIRYQRKDGVQLTATLYLPPG 674
Query: 423 YDPSKDGHLLCLFWAYPGEFRSKDAAGQVRGSPNEFS 459
YDPSKDG L CLFW+YPGEF+SKDAAGQVRGSPNEF+
Sbjct: 675 YDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFA 711
>sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa
subsp. japonica GN=GEP PE=2 SV=1
Length = 938
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/456 (70%), Positives = 386/456 (84%), Gaps = 1/456 (0%)
Query: 3 LNAVFGSFVWVNSSVLLVYTIPLSRGDSPKKSLVPFGPKIQSNEQQNVIQNRYTEGLLKD 62
LNA+F SFVWVN+S LLV TIPLSRG P+K VP GPKIQSNE NV+Q R + LLKD
Sbjct: 238 LNAIFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKD 297
Query: 63 EFDEYLFEHYTTTQLVLATLDGTVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSY 122
E+D LF++Y T+QLVLA+ DGTVK GPPA+YT+++PSPD KY++I+SI RPYS+ V
Sbjct: 298 EYDADLFDYYATSQLVLASFDGTVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPC 357
Query: 123 TKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQD 182
+FP+KV++WT DG+F+R+LC+LPL E+IPIA +SVR+G R I WR D+P+ LYWVETQD
Sbjct: 358 GRFPKKVELWTVDGEFIRELCDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQD 417
Query: 183 GGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQT 242
GG AKVEVSPRDI+Y + AEP+ GE+PEILHKLDLR+ G SWCD+SLALV E+W+KT +T
Sbjct: 418 GGDAKVEVSPRDIVYMENAEPINGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKT 477
Query: 243 RTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLN 302
RTW+ISP KD +P ILFDRSSEDVYSDPG PM+R+++ GT VIAK+KK+ D+ TYILLN
Sbjct: 478 RTWVISPDKKDVSPRILFDRSSEDVYSDPGSPMLRRTAMGTYVIAKVKKQ-DENTYILLN 536
Query: 303 GRGATPEGDVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTS 362
G GATPEG+VPFLDLF+INTGSKERIW+SDKEKYYET VAL D++ G++ L +LKILTS
Sbjct: 537 GMGATPEGNVPFLDLFDINTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTS 596
Query: 363 KESKTEITQYWIQSWPHKKCRQITDFPHPYPLLSTLQKELIKYQRKDGVQLTAKLYLPTG 422
KESKTE TQY++Q WP KK QITDFPHPYP L++L KE+I+YQRKDGVQLTA LYLP G
Sbjct: 597 KESKTENTQYYLQIWPEKKQVQITDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPG 656
Query: 423 YDPSKDGHLLCLFWAYPGEFRSKDAAGQVRGSPNEF 458
YDPS+DG L CL W+YPGEF+SKDAAGQVRGSPNEF
Sbjct: 657 YDPSQDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 692
>sp|Q2MHH2|KU80_ASPOR ATP-dependent DNA helicase II subunit 2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=ku80 PE=3 SV=1
Length = 725
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 67 YLFEHYTTTQLVLATLDGTVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFP 126
+ E Y +LV VKE PP I + PS + +Y + + P++ V +FP
Sbjct: 396 FELECYAVARLV-------VKENKPPVI-VLLAPSIEPEYECLLEVQLPFAEDVRTYRFP 447
Query: 127 QKVQVWTADGKFVRQLCELP 146
+V T GK V Q LP
Sbjct: 448 PLDKVITVSGKVVTQHRNLP 467
>sp|Q2MHH1|KU80_ASPSO ATP-dependent DNA helicase II subunit 2 OS=Aspergillus sojae
GN=ku80 PE=3 SV=1
Length = 725
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 67 YLFEHYTTTQLVLATLDGTVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFP 126
+ E Y +LV VKE PP I + PS + Y + + P++ V +FP
Sbjct: 396 FELECYAVARLV-------VKENKPPVI-VLLAPSIEPDYECLLEVQLPFAEDVRTYRFP 447
Query: 127 QKVQVWTADGKFVRQLCELP 146
+V T GK V Q LP
Sbjct: 448 PLDKVITVSGKVVTQHRNLP 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,535,844
Number of Sequences: 539616
Number of extensions: 8212047
Number of successful extensions: 17389
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17384
Number of HSP's gapped (non-prelim): 8
length of query: 459
length of database: 191,569,459
effective HSP length: 121
effective length of query: 338
effective length of database: 126,275,923
effective search space: 42681261974
effective search space used: 42681261974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)