Query 012630
Match_columns 459
No_of_seqs 206 out of 619
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01029 tolB translocation pr 99.8 2.3E-16 4.9E-21 163.0 26.7 266 38-387 140-412 (428)
2 PRK03629 tolB translocation pr 99.7 6.9E-15 1.5E-19 152.3 28.1 237 74-388 178-416 (429)
3 PRK05137 tolB translocation pr 99.7 5.9E-15 1.3E-19 153.2 27.2 237 74-387 181-421 (435)
4 PRK04043 tolB translocation pr 99.7 1.6E-14 3.6E-19 148.5 27.5 240 74-387 168-409 (419)
5 COG1506 DAP2 Dipeptidyl aminop 99.7 1.5E-13 3.2E-18 148.5 32.1 85 353-441 319-404 (620)
6 PRK04792 tolB translocation pr 99.6 1.2E-13 2.5E-18 143.8 28.1 236 74-387 197-434 (448)
7 PRK02889 tolB translocation pr 99.6 1.6E-13 3.5E-18 142.1 28.1 235 74-386 175-411 (427)
8 PRK04922 tolB translocation pr 99.6 2.6E-13 5.6E-18 140.8 28.5 237 74-388 183-421 (433)
9 PRK05137 tolB translocation pr 99.6 8.5E-14 1.8E-18 144.6 24.4 193 74-328 225-419 (435)
10 PRK00178 tolB translocation pr 99.6 4.1E-13 9E-18 139.2 28.8 234 76-387 180-415 (430)
11 PRK04043 tolB translocation pr 99.6 1.2E-13 2.5E-18 142.2 22.6 189 74-328 212-407 (419)
12 PRK03629 tolB translocation pr 99.6 2.6E-13 5.6E-18 140.6 24.6 191 74-329 222-414 (429)
13 PRK10115 protease 2; Provision 99.6 4.3E-12 9.4E-17 138.2 32.3 82 355-439 371-453 (686)
14 PRK04792 tolB translocation pr 99.6 8.1E-13 1.7E-17 137.6 24.1 168 74-288 241-410 (448)
15 PRK00178 tolB translocation pr 99.6 8.7E-13 1.9E-17 136.8 24.0 168 74-288 222-391 (430)
16 PRK01029 tolB translocation pr 99.5 9E-13 2E-17 136.3 22.2 198 74-332 210-414 (428)
17 PRK02889 tolB translocation pr 99.5 1.8E-12 4E-17 134.2 24.2 169 74-289 219-389 (427)
18 PRK04922 tolB translocation pr 99.5 2.1E-12 4.6E-17 134.0 23.2 190 74-328 227-418 (433)
19 PRK01742 tolB translocation pr 99.5 9.2E-12 2E-16 129.1 26.7 229 75-388 184-414 (429)
20 TIGR02800 propeller_TolB tol-p 99.5 5E-11 1.1E-15 122.9 28.0 236 74-387 169-406 (417)
21 PF00930 DPPIV_N: Dipeptidyl p 99.4 2E-11 4.3E-16 123.4 22.6 265 73-389 21-327 (353)
22 COG0823 TolB Periplasmic compo 99.3 9.2E-11 2E-15 120.4 18.5 148 75-260 218-367 (425)
23 PRK01742 tolB translocation pr 99.2 1.5E-08 3.3E-13 105.1 28.1 203 104-387 168-370 (429)
24 TIGR02800 propeller_TolB tol-p 99.1 8.3E-09 1.8E-13 106.3 21.7 168 75-289 214-383 (417)
25 COG0823 TolB Periplasmic compo 99.1 2.6E-09 5.6E-14 109.7 17.1 172 73-289 171-344 (425)
26 PF00930 DPPIV_N: Dipeptidyl p 99.0 1.2E-08 2.5E-13 103.2 18.5 247 69-370 57-353 (353)
27 PRK13616 lipoprotein LpqB; Pro 98.8 5.2E-08 1.1E-12 104.1 14.3 170 36-252 351-529 (591)
28 COG1770 PtrB Protease II [Amin 98.7 2.2E-05 4.9E-10 82.3 29.0 295 96-440 132-457 (682)
29 PF08662 eIF2A: Eukaryotic tra 98.7 1.1E-06 2.3E-11 81.2 17.4 136 71-247 35-178 (194)
30 PF14583 Pectate_lyase22: Olig 98.7 3.2E-06 6.9E-11 84.4 20.8 224 56-332 39-283 (386)
31 COG4946 Uncharacterized protei 98.6 3E-06 6.6E-11 84.6 18.6 235 71-383 55-300 (668)
32 PF02897 Peptidase_S9_N: Proly 98.6 4.8E-05 1E-09 78.5 27.7 140 96-262 127-275 (414)
33 COG4946 Uncharacterized protei 98.4 1.6E-05 3.6E-10 79.5 17.8 249 97-422 41-296 (668)
34 KOG2281 Dipeptidyl aminopeptid 98.4 4.2E-05 9.2E-10 79.5 21.3 129 295-440 514-651 (867)
35 PF14583 Pectate_lyase22: Olig 98.3 5E-05 1.1E-09 75.9 17.9 319 10-378 41-383 (386)
36 KOG2100 Dipeptidyl aminopeptid 98.1 0.0022 4.8E-08 71.0 28.9 56 398-457 496-551 (755)
37 PRK13616 lipoprotein LpqB; Pro 98.0 4.7E-05 1E-09 81.7 12.2 129 74-232 328-463 (591)
38 TIGR03866 PQQ_ABC_repeats PQQ- 97.8 0.026 5.5E-07 54.4 27.3 134 75-252 53-189 (300)
39 TIGR03866 PQQ_ABC_repeats PQQ- 97.8 0.0084 1.8E-07 57.8 22.9 121 74-235 10-133 (300)
40 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.069 1.5E-06 53.7 26.4 94 73-177 25-121 (352)
41 PF10282 Lactonase: Lactonase, 97.6 0.011 2.3E-07 59.6 21.0 147 71-252 105-279 (345)
42 PF08662 eIF2A: Eukaryotic tra 97.6 0.0034 7.3E-08 57.9 15.5 152 96-288 9-161 (194)
43 PF10282 Lactonase: Lactonase, 97.4 0.073 1.6E-06 53.6 24.2 151 74-251 61-225 (345)
44 KOG2315 Predicted translation 97.4 0.0022 4.8E-08 65.8 12.9 143 65-248 241-390 (566)
45 COG2706 3-carboxymuconate cycl 97.4 0.03 6.5E-07 55.0 19.9 214 55-329 92-331 (346)
46 PF07433 DUF1513: Protein of u 97.3 0.015 3.2E-07 56.9 16.8 139 75-236 28-182 (305)
47 PF08450 SGL: SMP-30/Gluconola 97.3 0.064 1.4E-06 51.0 20.8 143 73-250 20-164 (246)
48 KOG2237 Predicted serine prote 97.2 0.15 3.2E-06 54.1 23.7 84 355-440 392-479 (712)
49 KOG0318 WD40 repeat stress pro 97.2 0.023 4.9E-07 58.2 17.1 61 94-178 192-253 (603)
50 KOG2055 WD40 repeat protein [G 97.0 0.0096 2.1E-07 59.9 11.8 116 95-251 260-375 (514)
51 COG2706 3-carboxymuconate cycl 96.9 0.49 1.1E-05 46.7 22.9 250 76-387 67-332 (346)
52 PF06433 Me-amine-dh_H: Methyl 96.9 0.41 8.8E-06 47.5 22.6 97 73-180 15-115 (342)
53 COG1505 Serine proteases of th 96.9 0.0049 1.1E-07 64.4 9.3 82 354-440 349-430 (648)
54 PF07676 PD40: WD40-like Beta 96.8 0.0015 3.3E-08 43.3 3.2 28 87-114 2-30 (39)
55 KOG0293 WD40 repeat-containing 96.7 0.017 3.6E-07 57.6 10.9 116 94-251 226-343 (519)
56 PF02239 Cytochrom_D1: Cytochr 96.6 0.12 2.7E-06 52.5 17.1 135 73-252 14-160 (369)
57 PF02897 Peptidase_S9_N: Proly 96.5 0.65 1.4E-05 47.8 22.2 110 163-289 127-245 (414)
58 KOG0271 Notchless-like WD40 re 96.4 0.015 3.2E-07 57.4 8.8 145 48-235 321-470 (480)
59 TIGR02171 Fb_sc_TIGR02171 Fibr 96.1 0.022 4.8E-07 62.6 9.0 129 55-216 316-454 (912)
60 COG3490 Uncharacterized protei 95.9 0.38 8.2E-06 46.3 15.1 65 94-178 115-179 (366)
61 KOG0645 WD40 repeat protein [G 95.9 0.13 2.8E-06 48.8 11.8 115 94-249 63-181 (312)
62 KOG0973 Histone transcription 95.9 0.074 1.6E-06 58.8 11.6 116 93-248 70-201 (942)
63 KOG1274 WD40 repeat protein [G 95.8 0.1 2.2E-06 56.9 12.0 109 92-235 138-251 (933)
64 PF10647 Gmad1: Lipoprotein Lp 95.8 0.47 1E-05 45.6 15.7 104 75-181 2-132 (253)
65 PRK11028 6-phosphogluconolacto 95.6 1.5 3.2E-05 43.6 19.2 80 75-178 12-97 (330)
66 PF08450 SGL: SMP-30/Gluconola 95.6 0.38 8.3E-06 45.6 14.4 140 75-250 60-213 (246)
67 COG3386 Gluconolactonase [Carb 95.5 1.4 3E-05 43.7 18.1 89 73-180 83-182 (307)
68 PRK11028 6-phosphogluconolacto 95.5 0.52 1.1E-05 46.8 15.4 126 96-252 178-308 (330)
69 KOG1446 Histone H3 (Lys4) meth 95.4 0.17 3.7E-06 48.9 10.9 56 94-172 189-245 (311)
70 KOG0272 U4/U6 small nuclear ri 95.3 0.042 9.2E-07 54.9 6.8 114 92-248 261-375 (459)
71 KOG0293 WD40 repeat-containing 95.2 0.14 2.9E-06 51.3 9.8 119 75-234 248-372 (519)
72 PRK10115 protease 2; Provision 95.1 0.19 4.2E-06 55.4 11.8 87 161-261 128-218 (686)
73 KOG1445 Tumor-specific antigen 95.0 0.42 9.1E-06 50.4 13.0 98 56-179 630-739 (1012)
74 KOG2139 WD40 repeat protein [G 95.0 0.23 4.9E-06 49.0 10.4 114 94-249 197-310 (445)
75 KOG1407 WD40 repeat protein [F 94.9 0.08 1.7E-06 50.0 6.8 58 92-176 189-247 (313)
76 KOG0291 WD40-repeat-containing 94.9 1.3 2.9E-05 47.7 16.5 125 95-252 353-512 (893)
77 PF02239 Cytochrom_D1: Cytochr 94.6 1.2 2.6E-05 45.3 15.2 142 74-251 57-203 (369)
78 PTZ00421 coronin; Provisional 94.4 0.51 1.1E-05 49.9 12.5 111 91-235 74-187 (493)
79 cd00200 WD40 WD40 domain, foun 94.4 0.64 1.4E-05 43.1 12.0 120 74-235 156-280 (289)
80 cd00200 WD40 WD40 domain, foun 94.3 1.1 2.3E-05 41.6 13.5 120 74-235 114-238 (289)
81 PF04762 IKI3: IKI3 family; I 94.1 14 0.0003 42.4 26.0 40 73-112 95-140 (928)
82 PTZ00420 coronin; Provisional 94.1 6.9 0.00015 42.1 20.2 58 92-176 125-183 (568)
83 PTZ00421 coronin; Provisional 94.0 9.2 0.0002 40.5 20.9 115 92-247 125-244 (493)
84 PTZ00420 coronin; Provisional 94.0 1 2.3E-05 48.3 13.8 122 92-252 74-199 (568)
85 KOG0271 Notchless-like WD40 re 94.0 0.41 8.9E-06 47.6 9.7 115 92-248 115-235 (480)
86 KOG0291 WD40-repeat-containing 93.9 0.71 1.5E-05 49.7 11.9 24 88-111 51-74 (893)
87 TIGR02658 TTQ_MADH_Hv methylam 93.8 1.3 2.8E-05 44.7 13.2 117 127-252 215-332 (352)
88 COG3386 Gluconolactonase [Carb 93.7 7.9 0.00017 38.3 24.1 51 193-250 142-193 (307)
89 KOG0318 WD40 repeat stress pro 93.7 0.73 1.6E-05 47.6 11.2 129 76-247 466-601 (603)
90 PLN02919 haloacid dehalogenase 93.6 10 0.00022 44.1 21.9 70 97-179 687-758 (1057)
91 KOG1446 Histone H3 (Lys4) meth 93.6 1 2.2E-05 43.6 11.5 67 163-247 191-261 (311)
92 KOG2139 WD40 repeat protein [G 93.5 0.26 5.6E-06 48.7 7.5 57 55-111 196-257 (445)
93 KOG0279 G protein beta subunit 93.5 1.3 2.8E-05 42.5 11.8 122 89-248 189-313 (315)
94 KOG4497 Uncharacterized conser 93.5 0.21 4.6E-06 48.6 6.7 56 93-173 92-147 (447)
95 KOG1407 WD40 repeat protein [F 93.4 7.4 0.00016 37.1 17.2 38 75-112 87-126 (313)
96 KOG1445 Tumor-specific antigen 93.3 0.38 8.2E-06 50.7 8.5 136 9-178 632-782 (1012)
97 KOG0305 Anaphase promoting com 93.2 1.3 2.8E-05 46.3 12.5 119 92-249 301-420 (484)
98 KOG4497 Uncharacterized conser 93.2 0.34 7.4E-06 47.3 7.7 95 94-228 320-414 (447)
99 KOG0266 WD40 repeat-containing 93.1 2.1 4.5E-05 44.9 14.3 131 74-248 224-364 (456)
100 KOG2394 WD40 protein DMR-N9 [G 92.6 0.19 4.2E-06 51.9 5.3 20 94-113 292-311 (636)
101 KOG0315 G-protein beta subunit 92.6 1.1 2.5E-05 42.2 9.9 156 57-249 128-289 (311)
102 PF05448 AXE1: Acetyl xylan es 92.4 0.15 3.3E-06 50.7 4.4 41 397-441 53-95 (320)
103 TIGR02171 Fb_sc_TIGR02171 Fibr 92.4 1.4 2.9E-05 49.1 11.8 86 194-289 329-417 (912)
104 KOG1274 WD40 repeat protein [G 92.2 1 2.2E-05 49.4 10.4 60 93-176 189-248 (933)
105 KOG2919 Guanine nucleotide-bin 92.2 2.3 5E-05 41.6 11.7 191 9-235 54-269 (406)
106 KOG0973 Histone transcription 92.1 0.67 1.5E-05 51.5 9.0 106 91-234 128-237 (942)
107 PLN02919 haloacid dehalogenase 92.0 3.5 7.6E-05 47.9 15.3 126 96-253 743-891 (1057)
108 KOG0284 Polyadenylation factor 92.0 0.44 9.5E-06 47.7 6.8 58 93-176 97-154 (464)
109 KOG1539 WD repeat protein [Gen 91.3 0.68 1.5E-05 50.3 7.8 81 72-180 553-637 (910)
110 KOG0266 WD40 repeat-containing 91.3 2.1 4.6E-05 44.9 11.7 112 92-247 203-317 (456)
111 KOG0296 Angio-associated migra 91.2 5.3 0.00011 39.7 13.1 120 88-252 101-222 (399)
112 KOG0288 WD40 repeat protein Ti 91.1 0.57 1.2E-05 47.0 6.5 79 73-175 361-447 (459)
113 PF10647 Gmad1: Lipoprotein Lp 91.1 15 0.00032 35.2 21.8 117 160-303 24-142 (253)
114 KOG0272 U4/U6 small nuclear ri 91.0 1.3 2.8E-05 44.6 8.9 126 80-246 330-458 (459)
115 KOG0305 Anaphase promoting com 90.7 2.2 4.7E-05 44.6 10.7 38 76-113 198-238 (484)
116 KOG2314 Translation initiation 90.7 2.1 4.6E-05 44.7 10.3 83 73-181 280-368 (698)
117 COG3458 Acetyl esterase (deace 90.6 0.48 1E-05 45.4 5.3 38 397-438 53-90 (321)
118 KOG1273 WD40 repeat protein [G 90.5 4.4 9.6E-05 39.6 11.7 98 95-233 26-125 (405)
119 COG5354 Uncharacterized protei 90.2 3 6.4E-05 43.2 10.8 138 71-248 251-395 (561)
120 PF07676 PD40: WD40-like Beta 90.2 0.74 1.6E-05 30.1 4.6 37 210-246 2-39 (39)
121 KOG0772 Uncharacterized conser 89.8 1 2.2E-05 46.5 7.2 29 94-135 366-394 (641)
122 KOG2096 WD40 repeat protein [G 89.4 8.3 0.00018 37.8 12.6 67 92-179 86-152 (420)
123 KOG2096 WD40 repeat protein [G 89.3 3.1 6.6E-05 40.7 9.6 45 76-133 210-256 (420)
124 PF03088 Str_synth: Strictosid 89.2 0.81 1.7E-05 36.4 4.9 58 67-136 29-88 (89)
125 KOG2055 WD40 repeat protein [G 89.2 2.1 4.5E-05 43.7 8.7 138 73-248 323-467 (514)
126 KOG0273 Beta-transducin family 89.0 4.3 9.2E-05 41.6 10.8 57 93-175 236-292 (524)
127 KOG0275 Conserved WD40 repeat- 88.9 5.1 0.00011 39.2 10.8 67 89-172 210-276 (508)
128 KOG0278 Serine/threonine kinas 88.8 6.4 0.00014 37.3 11.1 130 77-251 167-300 (334)
129 KOG2315 Predicted translation 88.6 1.7 3.6E-05 45.4 7.8 78 75-176 294-371 (566)
130 KOG0279 G protein beta subunit 88.2 9.7 0.00021 36.7 12.0 121 75-234 85-210 (315)
131 KOG0286 G-protein beta subunit 88.2 7 0.00015 37.8 11.1 129 77-245 211-342 (343)
132 KOG0263 Transcription initiati 87.8 2.5 5.4E-05 45.7 8.7 91 126-247 556-648 (707)
133 KOG0288 WD40 repeat protein Ti 87.3 4.8 0.0001 40.6 9.9 106 92-234 341-449 (459)
134 KOG0263 Transcription initiati 87.1 1.3 2.9E-05 47.7 6.3 77 73-176 557-635 (707)
135 KOG2106 Uncharacterized conser 84.6 3.4 7.4E-05 42.7 7.5 76 74-172 427-504 (626)
136 PF06433 Me-amine-dh_H: Methyl 84.0 14 0.0003 36.9 11.3 151 73-252 155-322 (342)
137 KOG4378 Nuclear protein COP1 [ 84.0 16 0.00035 37.9 11.9 119 88-251 158-281 (673)
138 KOG0265 U5 snRNP-specific prot 83.9 18 0.00039 35.3 11.5 118 90-248 45-163 (338)
139 KOG1524 WD40 repeat-containing 83.8 4.3 9.4E-05 42.3 7.9 38 71-108 162-202 (737)
140 KOG1920 IkappaB kinase complex 83.7 13 0.00028 42.6 12.1 40 74-113 89-130 (1265)
141 PLN00181 protein SPA1-RELATED; 82.8 14 0.0003 41.7 12.4 123 91-248 482-606 (793)
142 KOG4499 Ca2+-binding protein R 82.1 30 0.00064 32.8 11.9 126 166-325 115-245 (310)
143 KOG1273 WD40 repeat protein [G 81.8 2.7 5.8E-05 41.0 5.2 56 74-142 44-103 (405)
144 KOG0302 Ribosome Assembly prot 81.6 26 0.00056 35.2 12.0 140 73-250 232-380 (440)
145 KOG0645 WD40 repeat protein [G 81.2 28 0.00061 33.5 11.6 114 92-246 105-223 (312)
146 COG3204 Uncharacterized protei 80.9 21 0.00045 34.9 10.8 117 92-248 85-210 (316)
147 COG5354 Uncharacterized protei 80.2 18 0.0004 37.6 10.8 149 57-234 134-294 (561)
148 COG4099 Predicted peptidase [G 80.1 3.6 7.8E-05 40.1 5.4 32 407-440 168-200 (387)
149 KOG2919 Guanine nucleotide-bin 79.9 14 0.0003 36.4 9.3 30 83-112 37-69 (406)
150 KOG0643 Translation initiation 78.9 50 0.0011 31.8 12.4 137 78-247 77-219 (327)
151 PF04762 IKI3: IKI3 family; I 78.7 20 0.00043 41.2 11.7 63 96-179 213-275 (928)
152 KOG0282 mRNA splicing factor [ 77.1 13 0.00029 38.2 8.7 114 92-249 258-373 (503)
153 KOG0283 WD40 repeat-containing 77.1 34 0.00074 37.5 12.2 30 83-112 441-471 (712)
154 PF07433 DUF1513: Protein of u 76.8 81 0.0018 31.1 19.0 142 162-330 7-155 (305)
155 KOG2394 WD40 protein DMR-N9 [G 76.1 13 0.00028 39.0 8.3 157 69-247 189-361 (636)
156 KOG0273 Beta-transducin family 75.9 30 0.00065 35.8 10.7 136 77-247 341-481 (524)
157 KOG0640 mRNA cleavage stimulat 74.3 79 0.0017 31.2 12.6 136 71-248 180-335 (430)
158 KOG0772 Uncharacterized conser 74.2 28 0.0006 36.4 10.1 82 75-176 150-231 (641)
159 PLN00181 protein SPA1-RELATED; 74.2 1.6E+02 0.0034 33.2 20.2 129 74-248 554-690 (793)
160 KOG0283 WD40 repeat-containing 74.2 69 0.0015 35.2 13.6 63 88-176 405-468 (712)
161 TIGR02604 Piru_Ver_Nterm putat 74.1 31 0.00068 34.9 10.8 69 161-235 125-202 (367)
162 KOG0296 Angio-associated migra 73.7 1E+02 0.0023 30.9 15.3 122 84-248 55-178 (399)
163 KOG1063 RNA polymerase II elon 72.7 6.5 0.00014 42.2 5.4 19 95-113 575-593 (764)
164 PF15492 Nbas_N: Neuroblastoma 71.0 18 0.00039 34.9 7.6 18 161-179 45-62 (282)
165 PF00400 WD40: WD domain, G-be 70.8 7.2 0.00016 24.8 3.6 21 92-112 11-31 (39)
166 KOG1524 WD40 repeat-containing 70.1 32 0.00069 36.2 9.5 60 92-178 104-163 (737)
167 PRK10439 enterobactin/ferric e 70.0 7.9 0.00017 40.0 5.4 40 398-440 178-218 (411)
168 PRK05077 frsA fermentation/res 69.1 8.6 0.00019 39.8 5.5 37 398-439 166-202 (414)
169 COG1506 DAP2 Dipeptidyl aminop 68.7 21 0.00046 39.0 8.7 104 94-233 14-117 (620)
170 KOG0264 Nucleosome remodeling 68.3 85 0.0018 32.2 11.9 154 57-248 231-404 (422)
171 KOG4499 Ca2+-binding protein R 68.0 1.1E+02 0.0024 29.1 11.7 67 96-181 112-178 (310)
172 KOG0315 G-protein beta subunit 67.4 1.2E+02 0.0026 29.1 18.2 145 59-247 45-196 (311)
173 PF13449 Phytase-like: Esteras 66.2 1.2E+02 0.0026 30.1 12.9 145 96-251 88-252 (326)
174 KOG0269 WD40 repeat-containing 64.5 20 0.00044 39.1 7.1 79 75-177 199-281 (839)
175 PF06977 SdiA-regulated: SdiA- 64.3 1.4E+02 0.003 28.6 12.7 46 86-143 14-60 (248)
176 PF05694 SBP56: 56kDa selenium 63.9 1.1E+02 0.0023 31.9 11.8 115 123-259 218-350 (461)
177 PF15492 Nbas_N: Neuroblastoma 63.6 8.7 0.00019 37.0 3.8 36 96-144 47-82 (282)
178 PRK13614 lipoprotein LpqB; Pro 62.6 1.6E+02 0.0035 31.9 13.6 75 162-250 436-518 (573)
179 KOG2110 Uncharacterized conser 61.9 1.2E+02 0.0025 30.7 11.2 138 73-249 104-249 (391)
180 KOG0307 Vesicle coat complex C 61.8 20 0.00043 40.7 6.7 144 73-253 137-287 (1049)
181 KOG0277 Peroxisomal targeting 60.5 56 0.0012 31.3 8.4 121 96-249 12-136 (311)
182 KOG2048 WD40 repeat protein [G 60.2 1.9E+02 0.0042 31.4 13.2 22 92-113 382-403 (691)
183 PF12566 DUF3748: Protein of u 59.8 9.4 0.0002 31.6 2.9 18 96-113 71-88 (122)
184 KOG1063 RNA polymerase II elon 59.4 31 0.00067 37.3 7.3 124 87-249 520-649 (764)
185 KOG2377 Uncharacterized conser 58.8 57 0.0012 33.9 8.7 95 134-250 41-142 (657)
186 KOG0306 WD40-repeat-containing 58.3 90 0.0019 34.4 10.5 73 161-250 510-582 (888)
187 KOG0264 Nucleosome remodeling 58.1 23 0.0005 36.1 5.9 90 74-178 294-392 (422)
188 PRK13604 luxD acyl transferase 57.7 14 0.0003 36.5 4.3 33 404-439 13-45 (307)
189 PF07995 GSDH: Glucose / Sorbo 56.8 1.3E+02 0.0027 30.0 11.1 84 159-249 113-213 (331)
190 KOG2048 WD40 repeat protein [G 56.5 38 0.00082 36.5 7.4 57 74-143 450-513 (691)
191 KOG2314 Translation initiation 56.4 2.8E+02 0.0061 29.7 13.8 157 94-288 348-510 (698)
192 PF12894 Apc4_WD40: Anaphase-p 56.1 24 0.00053 24.3 4.1 31 94-137 13-43 (47)
193 KOG1963 WD40 repeat protein [G 56.0 49 0.0011 36.6 8.2 100 96-234 209-312 (792)
194 KOG0268 Sof1-like rRNA process 55.6 83 0.0018 31.7 9.0 29 220-250 319-347 (433)
195 KOG0303 Actin-binding protein 55.6 2.5E+02 0.0053 28.8 13.7 51 72-135 151-203 (472)
196 KOG4283 Transcription-coupled 55.2 43 0.00093 32.7 6.9 87 73-176 166-262 (397)
197 KOG1408 WD40 repeat protein [F 54.6 72 0.0016 35.0 9.0 115 92-250 78-196 (1080)
198 PLN02442 S-formylglutathione h 52.9 24 0.00053 34.2 5.2 39 398-439 16-55 (283)
199 KOG2281 Dipeptidyl aminopeptid 52.8 38 0.00083 36.6 6.7 31 357-387 515-548 (867)
200 PF01731 Arylesterase: Arylest 52.5 35 0.00076 26.9 5.0 40 71-111 32-72 (86)
201 PRK13615 lipoprotein LpqB; Pro 52.4 3E+02 0.0065 29.7 13.5 76 161-251 418-503 (557)
202 KOG0647 mRNA export protein (c 52.3 1.2E+02 0.0026 29.8 9.4 105 93-236 28-135 (347)
203 KOG1009 Chromatin assembly com 50.9 67 0.0014 32.7 7.7 58 160-233 124-182 (434)
204 KOG2041 WD40 repeat protein [G 50.3 37 0.00081 37.0 6.1 30 96-138 160-189 (1189)
205 KOG1539 WD repeat protein [Gen 50.0 89 0.0019 34.8 8.9 59 74-144 223-284 (910)
206 TIGR02604 Piru_Ver_Nterm putat 49.5 2.3E+02 0.0049 28.6 11.8 33 220-252 127-174 (367)
207 KOG0647 mRNA export protein (c 49.3 1.3E+02 0.0029 29.5 9.1 78 74-177 51-131 (347)
208 PF13449 Phytase-like: Esteras 49.2 2.8E+02 0.006 27.5 16.5 110 296-421 95-225 (326)
209 KOG0319 WD40-repeat-containing 48.9 73 0.0016 34.8 8.0 116 2-138 15-138 (775)
210 KOG0278 Serine/threonine kinas 48.2 2.6E+02 0.0056 26.9 13.4 108 85-232 93-200 (334)
211 PRK13615 lipoprotein LpqB; Pro 46.7 2.6E+02 0.0055 30.2 11.9 64 92-172 416-482 (557)
212 TIGR02821 fghA_ester_D S-formy 46.5 34 0.00073 33.0 5.0 40 398-440 11-51 (275)
213 PF03088 Str_synth: Strictosid 46.2 78 0.0017 25.1 6.1 70 97-180 2-76 (89)
214 PRK02888 nitrous-oxide reducta 46.1 43 0.00093 36.3 6.0 52 73-136 294-352 (635)
215 KOG0771 Prolactin regulatory e 45.7 2.1E+02 0.0044 29.3 10.2 38 92-143 186-224 (398)
216 COG2382 Fes Enterochelin ester 44.9 21 0.00045 35.0 3.1 42 398-441 67-108 (299)
217 TIGR03606 non_repeat_PQQ dehyd 44.2 3.1E+02 0.0067 28.8 11.8 83 160-249 146-261 (454)
218 KOG2110 Uncharacterized conser 44.0 1.1E+02 0.0023 30.9 7.8 79 74-176 152-234 (391)
219 PF12715 Abhydrolase_7: Abhydr 43.5 36 0.00078 34.6 4.7 38 398-439 86-123 (390)
220 KOG2106 Uncharacterized conser 43.5 3E+02 0.0066 29.1 11.2 59 163-235 451-510 (626)
221 PF05694 SBP56: 56kDa selenium 42.6 56 0.0012 33.9 5.9 77 92-181 311-394 (461)
222 KOG1230 Protein containing rep 41.3 2.6E+02 0.0055 28.9 10.1 110 126-252 153-277 (521)
223 TIGR02276 beta_rpt_yvtn 40-res 41.0 95 0.0021 19.8 5.7 24 102-137 1-24 (42)
224 COG3670 Lignostilbene-alpha,be 41.0 4.5E+02 0.0098 27.6 20.8 70 66-143 145-222 (490)
225 COG2936 Predicted acyl esteras 39.9 38 0.00083 36.3 4.4 38 399-441 18-57 (563)
226 KOG0289 mRNA splicing factor [ 39.8 3.9E+02 0.0084 27.7 11.1 22 93-114 304-325 (506)
227 PF10584 Proteasome_A_N: Prote 39.3 14 0.00031 21.4 0.6 9 98-106 6-14 (23)
228 KOG3914 WD repeat protein WDR4 38.3 2.7E+02 0.0059 28.3 9.8 39 208-248 143-181 (390)
229 COG3204 Uncharacterized protei 38.2 3.6E+02 0.0079 26.5 10.3 23 93-115 181-203 (316)
230 KOG2377 Uncharacterized conser 38.1 1.2E+02 0.0026 31.6 7.3 103 92-234 66-172 (657)
231 KOG0290 Conserved WD40 repeat- 37.1 1.6E+02 0.0034 28.9 7.6 65 160-235 288-357 (364)
232 PRK13613 lipoprotein LpqB; Pro 36.8 3.8E+02 0.0082 29.3 11.5 41 71-111 331-381 (599)
233 KOG2111 Uncharacterized conser 36.3 1.4E+02 0.003 29.5 7.2 31 92-135 226-256 (346)
234 PF04841 Vps16_N: Vps16, N-ter 36.1 1.7E+02 0.0036 30.2 8.4 20 93-112 217-236 (410)
235 COG3490 Uncharacterized protei 35.8 4.4E+02 0.0095 26.0 15.9 74 163-249 71-147 (366)
236 PF12566 DUF3748: Protein of u 35.5 2E+02 0.0044 24.0 7.0 79 97-179 5-86 (122)
237 PRK13614 lipoprotein LpqB; Pro 35.4 5.3E+02 0.012 28.0 12.2 38 73-111 319-361 (573)
238 COG1225 Bcp Peroxiredoxin [Pos 35.2 25 0.00054 31.1 1.9 33 403-445 13-45 (157)
239 PF11768 DUF3312: Protein of u 34.7 1.1E+02 0.0023 32.6 6.7 50 73-135 279-329 (545)
240 KOG1009 Chromatin assembly com 34.4 48 0.001 33.7 3.8 55 92-172 123-178 (434)
241 COG1770 PtrB Protease II [Amin 33.3 6.9E+02 0.015 27.5 19.0 86 163-261 132-219 (682)
242 PF09910 DUF2139: Uncharacteri 33.3 1.6E+02 0.0035 29.0 7.0 70 313-390 78-151 (339)
243 TIGR03606 non_repeat_PQQ dehyd 33.0 6E+02 0.013 26.7 14.0 119 96-234 33-163 (454)
244 KOG4391 Predicted alpha/beta h 32.3 1.2E+02 0.0025 28.6 5.7 42 391-439 45-86 (300)
245 KOG0282 mRNA splicing factor [ 32.1 1.7E+02 0.0038 30.4 7.4 57 92-173 214-272 (503)
246 PLN02298 hydrolase, alpha/beta 31.7 73 0.0016 31.3 4.9 43 394-440 26-68 (330)
247 PF07995 GSDH: Glucose / Sorbo 30.6 3.4E+02 0.0073 27.0 9.4 55 96-170 5-59 (331)
248 PF06977 SdiA-regulated: SdiA- 30.3 4.8E+02 0.01 24.9 9.9 22 94-115 119-140 (248)
249 COG3391 Uncharacterized conser 29.1 6.2E+02 0.013 25.6 13.9 142 74-251 139-284 (381)
250 PF05787 DUF839: Bacterial pro 28.7 60 0.0013 34.7 3.8 37 77-114 482-522 (524)
251 TIGR03032 conserved hypothetic 28.6 2.3E+02 0.005 28.2 7.4 39 193-235 222-260 (335)
252 KOG0295 WD40 repeat-containing 28.0 1.2E+02 0.0027 30.4 5.4 47 77-136 316-365 (406)
253 KOG1963 WD40 repeat protein [G 27.9 1.2E+02 0.0027 33.6 5.9 54 93-172 252-305 (792)
254 PF06500 DUF1100: Alpha/beta h 27.6 1E+02 0.0022 31.8 5.0 34 398-437 163-196 (411)
255 KOG0855 Alkyl hydroperoxide re 27.2 72 0.0016 28.5 3.3 31 404-443 73-103 (211)
256 smart00135 LY Low-density lipo 27.0 1.6E+02 0.0034 18.6 4.4 29 161-201 10-38 (43)
257 PF00135 COesterase: Carboxyle 26.5 57 0.0012 34.3 3.2 38 406-447 104-141 (535)
258 KOG0289 mRNA splicing factor [ 26.5 2.1E+02 0.0045 29.6 6.8 58 93-176 348-405 (506)
259 KOG0306 WD40-repeat-containing 26.1 6.4E+02 0.014 28.2 10.6 126 85-248 406-538 (888)
260 KOG0307 Vesicle coat complex C 26.0 3.1E+02 0.0068 31.7 8.7 135 48-227 165-307 (1049)
261 PF04053 Coatomer_WDAD: Coatom 25.9 1.9E+02 0.0042 30.2 6.8 35 76-111 127-163 (443)
262 KOG1523 Actin-related protein 25.8 2.9E+02 0.0063 27.4 7.4 97 95-228 13-112 (361)
263 KOG0265 U5 snRNP-specific prot 25.8 6.6E+02 0.014 24.8 16.0 55 73-140 67-126 (338)
264 KOG0269 WD40 repeat-containing 25.5 3.8E+02 0.0082 29.8 8.9 114 92-247 176-295 (839)
265 KOG0640 mRNA cleavage stimulat 25.4 6.8E+02 0.015 24.9 10.9 31 93-136 306-336 (430)
266 KOG0641 WD40 repeat protein [G 25.1 1.9E+02 0.0042 27.2 5.8 75 75-170 253-330 (350)
267 KOG1036 Mitotic spindle checkp 25.1 5.3E+02 0.012 25.5 9.0 35 93-140 14-48 (323)
268 KOG1520 Predicted alkaloid syn 24.8 87 0.0019 31.7 3.8 39 73-111 197-237 (376)
269 PF04053 Coatomer_WDAD: Coatom 24.5 2.4E+02 0.0053 29.4 7.3 76 129-235 128-213 (443)
270 PF08553 VID27: VID27 cytoplas 24.5 1.5E+02 0.0033 33.3 6.0 115 36-176 511-635 (794)
271 PF05935 Arylsulfotrans: Aryls 24.3 8.5E+02 0.018 25.6 17.8 110 73-212 126-238 (477)
272 KOG1538 Uncharacterized conser 24.0 1.3E+02 0.0027 32.9 4.9 52 94-172 14-66 (1081)
273 KOG0299 U3 snoRNP-associated p 24.0 75 0.0016 32.8 3.2 31 95-138 205-235 (479)
274 KOG0286 G-protein beta subunit 23.9 2.7E+02 0.0059 27.3 6.8 40 90-142 53-93 (343)
275 KOG0639 Transducin-like enhanc 23.6 3.2E+02 0.0069 28.9 7.6 131 62-234 518-651 (705)
276 KOG4640 Anaphase-promoting com 23.2 1.2E+02 0.0026 32.7 4.7 27 96-135 66-92 (665)
277 PRK10162 acetyl esterase; Prov 22.6 1.6E+02 0.0035 29.0 5.4 39 398-443 55-93 (318)
278 KOG0771 Prolactin regulatory e 22.0 2.2E+02 0.0047 29.1 6.0 22 92-113 281-302 (398)
279 KOG0284 Polyadenylation factor 21.9 2.2E+02 0.0047 29.2 5.9 115 92-248 264-380 (464)
280 PRK13613 lipoprotein LpqB; Pro 21.8 8.2E+02 0.018 26.7 10.9 81 161-252 456-541 (599)
281 KOG0310 Conserved WD40 repeat- 21.1 9.7E+02 0.021 25.1 12.5 158 95-326 71-230 (487)
282 PF10313 DUF2415: Uncharacteri 21.1 2.4E+02 0.0053 19.1 4.2 35 95-141 3-40 (43)
283 COG3391 Uncharacterized conser 20.7 8.8E+02 0.019 24.5 13.0 119 94-252 117-241 (381)
284 cd00312 Esterase_lipase Estera 20.6 95 0.0021 32.5 3.5 35 407-445 75-109 (493)
285 KOG0275 Conserved WD40 repeat- 20.6 2.7E+02 0.0059 27.6 6.1 41 71-111 411-456 (508)
No 1
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=2.3e-16 Score=163.02 Aligned_cols=266 Identities=14% Similarity=0.126 Sum_probs=167.5
Q ss_pred CCCeEeecCCCcccccccccccCCChhhHHHHHHHhhcceEEEcC-CCceeecCCC-ceeeecccCCCCCeE--EEEEec
Q 012630 38 FGPKIQSNEQQNVIQNRYTEGLLKDEFDEYLFEHYTTTQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYI--LITSID 113 (459)
Q Consensus 38 ~~p~i~~~~~~~~~~~rt~~d~l~~~~D~~~f~~~~~sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l--~~~~~~ 113 (459)
..|.+. . .+++++.+..+.-+++ ..++||++|. ++++++||.. ....+++|||||+.+ +|++.+
T Consensus 140 g~~g~~--~-~~iayv~~~~~~~~~~---------~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~ 207 (428)
T PRK01029 140 GVPGIS--S-GKIIFSLSTTNSDTEL---------KQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYK 207 (428)
T ss_pred CCCccc--c-CEEEEEEeeCCccccc---------ccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEcc
Confidence 335555 2 4555665544443332 4789999999 6789999974 445799999999984 457643
Q ss_pred cCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCC
Q 012630 114 RPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPR 193 (459)
Q Consensus 114 ~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~ 193 (459)
....+||+.+++|++.++|+..+.... .+.|||||+ .|+|+...++ .
T Consensus 208 ----------~g~~~I~~~~l~~g~~~~lt~~~g~~~-------------~p~wSPDG~-~Laf~s~~~g-~-------- 254 (428)
T PRK01029 208 ----------LGVPKIFLGSLENPAGKKILALQGNQL-------------MPTFSPRKK-LLAFISDRYG-N-------- 254 (428)
T ss_pred ----------CCCceEEEEECCCCCceEeecCCCCcc-------------ceEECCCCC-EEEEEECCCC-C--------
Confidence 123689999999999999988654333 459999999 8888763322 1
Q ss_pred CeEEec--cCCCCCCCCceEeccccc-eeccceeCCCCcEEEEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCC
Q 012630 194 DIIYTQ--PAEPVEGEEPEILHKLDL-RFRGVSWCDDSLALVQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSD 270 (459)
Q Consensus 194 ~~l~~~--~~~pf~g~~~~~L~~~~~-~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~ 270 (459)
..+|++ +..--.+++++.|+.... ....+.|+|||..|++...+ ....++|+++....++.++.|+......
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~---- 329 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNS---- 329 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCc----
Confidence 134443 320001247788886432 34668999998666655432 3556899998753233356664322100
Q ss_pred CCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECCCCceEEEeecCcccceEEEEEeecCCCcc
Q 012630 271 PGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVG 350 (459)
Q Consensus 271 pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~ 350 (459)
....++|||+.+++... ..+ ...|+.+|+++|+.+.+..... ..+.+ .
T Consensus 330 ---~~p~wSPDG~~Laf~~~-----------------~~g-~~~I~v~dl~~g~~~~Lt~~~~--~~~~p-~-------- 377 (428)
T PRK01029 330 ---SCPAWSPDGKKIAFCSV-----------------IKG-VRQICVYDLATGRDYQLTTSPE--NKESP-S-------- 377 (428)
T ss_pred ---cceeECCCCCEEEEEEc-----------------CCC-CcEEEEEECCCCCeEEccCCCC--Cccce-E--------
Confidence 12357999987765431 011 2358889999998887765431 11111 1
Q ss_pred ccccCCCEEEEEeecCCCCcceEEEECCCcceeeccc
Q 012630 351 DVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 351 ~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~ 387 (459)
.+.|+..+++.... ....++|++++.+++.++||.
T Consensus 378 -wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 378 -WAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeec
Confidence 34455677776654 345789999998888888885
No 2
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=6.9e-15 Score=152.28 Aligned_cols=237 Identities=13% Similarity=0.069 Sum_probs=156.9
Q ss_pred hcceEEEcC-CCceeecCCCc-eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGPPA-IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~~~-~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
.++||++|. ++..++++... .+..++|||||++|+|++... ...+++++++.+++.+.|+..+.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~----------g~~~i~i~dl~~G~~~~l~~~~~---- 243 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----------GRSALVIQTLANGAVRQVASFPR---- 243 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC----------CCcEEEEEECCCCCeEEccCCCC----
Confidence 579999999 55778887744 567999999999999996321 23578999999888888876532
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
....+.|||||+ .|+|+...+ | ...||+++. .+++.+.|+........+.|+|||..|
T Consensus 244 ---------~~~~~~~SPDG~-~La~~~~~~-g--------~~~I~~~d~---~tg~~~~lt~~~~~~~~~~wSPDG~~I 301 (429)
T PRK03629 244 ---------HNGAPAFSPDGS-KLAFALSKT-G--------SLNLYVMDL---ASGQIRQVTDGRSNNTEPTWFPDSQNL 301 (429)
T ss_pred ---------CcCCeEECCCCC-EEEEEEcCC-C--------CcEEEEEEC---CCCCEEEccCCCCCcCceEECCCCCEE
Confidence 122569999999 888875422 1 236999988 666888888765566789999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++...+ ....++|.+++++++ .+.++.... ......+++||+++++... ++.
T Consensus 302 ~f~s~~-~g~~~Iy~~d~~~g~--~~~lt~~~~-------~~~~~~~SpDG~~Ia~~~~------------------~~g 353 (429)
T PRK03629 302 AYTSDQ-AGRPQVYKVNINGGA--PQRITWEGS-------QNQDADVSSDGKFMVMVSS------------------NGG 353 (429)
T ss_pred EEEeCC-CCCceEEEEECCCCC--eEEeecCCC-------CccCEEECCCCCEEEEEEc------------------cCC
Confidence 655432 345689999987643 355532110 0112356888887654321 111
Q ss_pred cceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeecccc
Q 012630 312 VPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITDF 388 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~ 388 (459)
...|+.+|+++++.+.|.... ..+.. .++.|+..+++.... ..-..++++++.++..++|+..
T Consensus 354 ~~~I~~~dl~~g~~~~Lt~~~---~~~~p----------~~SpDG~~i~~~s~~-~~~~~l~~~~~~G~~~~~l~~~ 416 (429)
T PRK03629 354 QQHIAKQDLATGGVQVLTDTF---LDETP----------SIAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFKARLPAT 416 (429)
T ss_pred CceEEEEECCCCCeEEeCCCC---CCCCc----------eECCCCCEEEEEEcC-CCceEEEEEECCCCCeEECccC
Confidence 235788899888877664321 11111 145566677776543 3345688889866667777753
No 3
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=5.9e-15 Score=153.25 Aligned_cols=237 Identities=13% Similarity=0.094 Sum_probs=156.0
Q ss_pred hcceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++|. ++..++++.. ..+..++|||||++|+|++... ...+++++|+.+++.++++..+.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~----------g~~~i~~~dl~~g~~~~l~~~~g---- 246 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN----------GRPRVYLLDLETGQRELVGNFPG---- 246 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC----------CCCEEEEEECCCCcEEEeecCCC----
Confidence 569999999 5678888864 4668999999999999997431 23679999999888888876432
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
....+.|||||+ .|+++...++ ..+||+++. .+++.+.|+........+.|+|||..|
T Consensus 247 ---------~~~~~~~SPDG~-~la~~~~~~g---------~~~Iy~~d~---~~~~~~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 247 ---------MTFAPRFSPDGR-KVVMSLSQGG---------NTDIYTMDL---RSGTTTRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred ---------cccCcEECCCCC-EEEEEEecCC---------CceEEEEEC---CCCceEEccCCCCccCceeEcCCCCEE
Confidence 123569999999 7777654322 347999998 667888888755555668999998655
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++... .....++|++++++++ .+.++.... .+. ...+++||+.|++... +++
T Consensus 305 ~f~s~-~~g~~~Iy~~d~~g~~--~~~lt~~~~--~~~-----~~~~SpdG~~ia~~~~------------------~~~ 356 (435)
T PRK05137 305 VFESD-RSGSPQLYVMNADGSN--PRRISFGGG--RYS-----TPVWSPRGDLIAFTKQ------------------GGG 356 (435)
T ss_pred EEEEC-CCCCCeEEEEECCCCC--eEEeecCCC--ccc-----CeEECCCCCEEEEEEc------------------CCC
Confidence 55442 2345689999987543 355542110 011 1247889887755431 111
Q ss_pred cceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCC--cceEEEECCCcceeeccc
Q 012630 312 VPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEI--TQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P--~ely~~~~~~g~~~~LT~ 387 (459)
...|+.++++++..+.+ .... ..+.+ .++.|+..|++........ ..||++++.+++.++|+.
T Consensus 357 ~~~i~~~d~~~~~~~~l-t~~~--~~~~p----------~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 357 QFSIGVMKPDGSGERIL-TSGF--LVEGP----------TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred ceEEEEEECCCCceEec-cCCC--CCCCC----------eECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 23577788776655433 2221 11111 1455667888877655543 579999987777777763
No 4
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.6e-14 Score=148.50 Aligned_cols=240 Identities=10% Similarity=-0.041 Sum_probs=158.4
Q ss_pred hcceEEEcCCC-ceeecCCCceeeecccCCCCCe-EEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATLDG-TVKEFGPPAIYTAVEPSPDQKY-ILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~~G-~~~~l~~~~~~~~~~~SPDG~~-l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++|.+| ..++++..+....++|||||++ ++|++.+. -..++|++|+.+++.++|+..+..
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~----------~~~~Iyv~dl~tg~~~~lt~~~g~--- 234 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGE----------RKPTLYKYNLYTGKKEKIASSQGM--- 234 (419)
T ss_pred cceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccC----------CCCEEEEEECCCCcEEEEecCCCc---
Confidence 47999999955 5777887766679999999997 65565431 124799999999999999874321
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
.....|||||+ .|+++...+ + ..+||++++ .+++.+.|+........+.|+|||..|
T Consensus 235 ----------~~~~~~SPDG~-~la~~~~~~-g--------~~~Iy~~dl---~~g~~~~LT~~~~~d~~p~~SPDG~~I 291 (419)
T PRK04043 235 ----------LVVSDVSKDGS-KLLLTMAPK-G--------QPDIYLYDT---NTKTLTQITNYPGIDVNGNFVEDDKRI 291 (419)
T ss_pred ----------EEeeEECCCCC-EEEEEEccC-C--------CcEEEEEEC---CCCcEEEcccCCCccCccEECCCCCEE
Confidence 12458999999 777776432 1 357999998 677889998766545668999998555
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++...+ ....+||++++++++ .+.++... .+ ...++|||+++++.... .+ .. ....
T Consensus 292 ~F~Sdr-~g~~~Iy~~dl~~g~--~~rlt~~g---~~------~~~~SPDG~~Ia~~~~~----~~------~~--~~~~ 347 (419)
T PRK04043 292 VFVSDR-LGYPNIFMKKLNSGS--VEQVVFHG---KN------NSSVSTYKNYIVYSSRE----TN------NE--FGKN 347 (419)
T ss_pred EEEECC-CCCceEEEEECCCCC--eEeCccCC---Cc------CceECCCCCEEEEEEcC----CC------cc--cCCC
Confidence 554432 355789999998653 34443211 01 12579999988765421 00 00 0001
Q ss_pred cceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeeccc
Q 012630 312 VPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~ 387 (459)
...|+.+|+++|+.+.|.... ..+. .. ++.||..|+|.... ..-..|+++++.++..++|..
T Consensus 348 ~~~I~v~d~~~g~~~~LT~~~---~~~~-p~---------~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 348 TFNLYLISTNSDYIRRLTANG---VNQF-PR---------FSSDGGSIMFIKYL-GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CcEEEEEECCCCCeEECCCCC---CcCC-eE---------ECCCCCEEEEEEcc-CCcEEEEEEecCCCeeEEeec
Confidence 246889999999888775532 1121 11 45566788887654 444568999986555555653
No 5
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.66 E-value=1.5e-13 Score=148.54 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=74.7
Q ss_pred ccCCCEEEEEeecCCCCcceEEEECCCcceeecccccCC-CCCCcCCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCc
Q 012630 353 NLNQLKILTSKESKTEITQYWIQSWPHKKCRQITDFPHP-YPLLSTLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHL 431 (459)
Q Consensus 353 ~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~~~~-~~~~~~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~ky 431 (459)
+.+++.+++..+++++|+++|+++. ++..+++..+.. +.+..+.++|.|+|++.||.+|+|||++|++++++| ||
T Consensus 319 ~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k--~y 394 (620)
T COG1506 319 DVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRK--KY 394 (620)
T ss_pred eeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCC--CC
Confidence 4467899999999999999999985 566677765555 667889999999999999999999999999999887 89
Q ss_pred eEEEEEcCCc
Q 012630 432 LCLFWAYPGE 441 (459)
Q Consensus 432 P~Il~~Yp~e 441 (459)
|+|||+|+.-
T Consensus 395 P~i~~~hGGP 404 (620)
T COG1506 395 PLIVYIHGGP 404 (620)
T ss_pred CEEEEeCCCC
Confidence 9999999985
No 6
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.2e-13 Score=143.83 Aligned_cols=236 Identities=14% Similarity=0.077 Sum_probs=152.8
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+|+++|. ++..+.++. ...+..++|||||++|+|++... ...++|++|+.+++.++++..+...
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----------g~~~L~~~dl~tg~~~~lt~~~g~~-- 264 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----------RKAEIFVQDIYTQVREKVTSFPGIN-- 264 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----------CCcEEEEEECCCCCeEEecCCCCCc--
Confidence 368999999 446777776 44567899999999999997431 1357899999988887787653211
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
..+.|||||+ .|+++...++ +..||.++. ++++.+.|+........+.|++||..|
T Consensus 265 -----------~~~~wSPDG~-~La~~~~~~g---------~~~Iy~~dl---~tg~~~~lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 265 -----------GAPRFSPDGK-KLALVLSKDG---------QPEIYVVDI---ATKALTRITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred -----------CCeeECCCCC-EEEEEEeCCC---------CeEEEEEEC---CCCCeEECccCCCCccceEECCCCCEE
Confidence 2469999999 7887653321 347999998 767888888654445678999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++...+ ....++|++++++++ .+.|+... .+. ....+++||+++++... ...
T Consensus 321 ~f~s~~-~g~~~Iy~~dl~~g~--~~~Lt~~g---~~~----~~~~~SpDG~~l~~~~~------------------~~g 372 (448)
T PRK04792 321 IFTSER-GGKPQIYRVNLASGK--VSRLTFEG---EQN----LGGSITPDGRSMIMVNR------------------TNG 372 (448)
T ss_pred EEEECC-CCCceEEEEECCCCC--EEEEecCC---CCC----cCeeECCCCCEEEEEEe------------------cCC
Confidence 655432 345789999987653 35453111 111 11246888886644321 112
Q ss_pred cceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeeccc
Q 012630 312 VPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~ 387 (459)
...|+++|+++++.+.+..... -+.. .++.|+..+++..... .-..+|+++.+++..++|+.
T Consensus 373 ~~~I~~~dl~~g~~~~lt~~~~---d~~p----------s~spdG~~I~~~~~~~-g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 373 KFNIARQDLETGAMQVLTSTRL---DESP----------SVAPNGTMVIYSTTYQ-GKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred ceEEEEEECCCCCeEEccCCCC---CCCc----------eECCCCCEEEEEEecC-CceEEEEEECCCCceEECcC
Confidence 2358889999888776643211 0111 1455667787766533 34569998876555666764
No 7
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.6e-13 Score=142.11 Aligned_cols=235 Identities=16% Similarity=0.109 Sum_probs=151.2
Q ss_pred hcceEEEcCCC-ceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATLDG-TVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~~G-~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++|.+| ..++++. ...+..++|||||++|+|++... ...++|++|+.+++.+.++..+.
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~----------~~~~I~~~dl~~g~~~~l~~~~g---- 240 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES----------KKPVVYVHDLATGRRRVVANFKG---- 240 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC----------CCcEEEEEECCCCCEEEeecCCC----
Confidence 46899999955 5677765 45567999999999999997431 23568999999888777775432
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
....+.|||||+ .|+++...++ ..+||.++. .+++.+.|+........+.|++||..|
T Consensus 241 ---------~~~~~~~SPDG~-~la~~~~~~g---------~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 241 ---------SNSAPAWSPDGR-TLAVALSRDG---------NSQIYTVNA---DGSGLRRLTQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred ---------CccceEECCCCC-EEEEEEccCC---------CceEEEEEC---CCCCcEECCCCCCCCcCeEEcCCCCEE
Confidence 123569999999 7877653322 347999988 666788887654445668999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++... +....++|.++.+++. .+.++... .++ .-..+++||++|++... ++.
T Consensus 299 ~f~s~-~~g~~~Iy~~~~~~g~--~~~lt~~g---~~~----~~~~~SpDG~~Ia~~s~------------------~~g 350 (427)
T PRK02889 299 YFTSD-RGGAPQIYRMPASGGA--AQRVTFTG---SYN----TSPRISPDGKLLAYISR------------------VGG 350 (427)
T ss_pred EEEec-CCCCcEEEEEECCCCc--eEEEecCC---CCc----CceEECCCCCEEEEEEc------------------cCC
Confidence 65443 2356789999986543 34443111 111 11246888887754321 111
Q ss_pred cceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeecc
Q 012630 312 VPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQIT 386 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT 386 (459)
...|+.+|+.+++.+.+.... ..+.+ . ++.|+..+++.....- -..+|+.+..++..++|+
T Consensus 351 ~~~I~v~d~~~g~~~~lt~~~---~~~~p-~---------~spdg~~l~~~~~~~g-~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 351 AFKLYVQDLATGQVTALTDTT---RDESP-S---------FAPNGRYILYATQQGG-RSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred cEEEEEEECCCCCeEEccCCC---CccCc-e---------ECCCCCEEEEEEecCC-CEEEEEEECCCCceEEee
Confidence 235778888888877664332 11111 1 3456677877765443 356888887544455565
No 8
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.6e-13 Score=140.84 Aligned_cols=237 Identities=13% Similarity=0.052 Sum_probs=154.3
Q ss_pred hcceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++|. ++..++|+.. ..+.+++|||||++|+|++... ...+++++|+.+++.++++..+..
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~----------~~~~l~~~dl~~g~~~~l~~~~g~--- 249 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER----------GRSAIYVQDLATGQRELVASFRGI--- 249 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC----------CCcEEEEEECCCCCEEEeccCCCC---
Confidence 457999999 5578888874 4567999999999999997331 235789999998888777764321
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
...+.|||||+ .|+++...++ ...||+++. .+++.+.|+........+.|++||..|
T Consensus 250 ----------~~~~~~SpDG~-~l~~~~s~~g---------~~~Iy~~d~---~~g~~~~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 250 ----------NGAPSFSPDGR-RLALTLSRDG---------NPEIYVMDL---GSRQLTRLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred ----------ccCceECCCCC-EEEEEEeCCC---------CceEEEEEC---CCCCeEECccCCCCccceEECCCCCEE
Confidence 12569999999 7777654322 247999988 666888887654444568999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++...+ ....++|.++..+++ .+.++.. ..++ ....+++||++|++... ++.
T Consensus 307 ~f~sd~-~g~~~iy~~dl~~g~--~~~lt~~---g~~~----~~~~~SpDG~~Ia~~~~------------------~~~ 358 (433)
T PRK04922 307 YFTSDR-GGRPQIYRVAASGGS--AERLTFQ---GNYN----ARASVSPDGKKIAMVHG------------------SGG 358 (433)
T ss_pred EEEECC-CCCceEEEEECCCCC--eEEeecC---CCCc----cCEEECCCCCEEEEEEC------------------CCC
Confidence 655432 345689999987543 3444311 1111 11356888887654321 111
Q ss_pred cceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeecccc
Q 012630 312 VPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITDF 388 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~ 388 (459)
...|+.+|+.+++.+.+..... .+.+ .++.|+..+++.... ..-..||++++.++..++|+..
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~~~~---~~~p----------~~spdG~~i~~~s~~-~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTPGSL---DESP----------SFAPNGSMVLYATRE-GGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred ceeEEEEECCCCCeEECCCCCC---CCCc----------eECCCCCEEEEEEec-CCceEEEEEECCCCceEEcccC
Confidence 2357788888888776643321 1111 134556778877655 3346799999866666777753
No 9
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8.5e-14 Score=144.57 Aligned_cols=193 Identities=15% Similarity=0.183 Sum_probs=130.9
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++++ +|+.++++. ++....++|||||++|+|+... ....++|++|++++..++|+..+..+
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~----------~g~~~Iy~~d~~~~~~~~Lt~~~~~~-- 292 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ----------GGNTDIYTMDLRSGTTTRLTDSPAID-- 292 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec----------CCCceEEEEECCCCceEEccCCCCcc--
Confidence 479999999 888888885 4556789999999999998643 12467999999998888888754322
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
..+.|+|||+ .|+|+... .| ..+||++++ +|++.+.|+.....+..+.|+|||..|
T Consensus 293 -----------~~~~~spDG~-~i~f~s~~-~g--------~~~Iy~~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 293 -----------TSPSYSPDGS-QIVFESDR-SG--------SPQLYVMNA---DGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred -----------CceeEcCCCC-EEEEEECC-CC--------CCeEEEEEC---CCCCeEEeecCCCcccCeEECCCCCEE
Confidence 2569999999 78877532 22 347999998 777888888655566778999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++... +....++++++++++. .++++... +... ..+++||+.|++.... +. ..+
T Consensus 349 a~~~~-~~~~~~i~~~d~~~~~--~~~lt~~~------~~~~--p~~spDG~~i~~~~~~-------------~~-~~~- 402 (435)
T PRK05137 349 AFTKQ-GGGQFSIGVMKPDGSG--ERILTSGF------LVEG--PTWAPNGRVIMFFRQT-------------PG-SGG- 402 (435)
T ss_pred EEEEc-CCCceEEEEEECCCCc--eEeccCCC------CCCC--CeECCCCCEEEEEEcc-------------CC-CCC-
Confidence 65442 2345689999986532 35553211 1112 2468888876544310 00 001
Q ss_pred cceEEEEECCCCceEEE
Q 012630 312 VPFLDLFNINTGSKERI 328 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l 328 (459)
...|+.++++++..+.+
T Consensus 403 ~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 403 APKLYTVDLTGRNEREV 419 (435)
T ss_pred cceEEEEECCCCceEEc
Confidence 24688888877666544
No 10
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.1e-13 Score=139.20 Aligned_cols=234 Identities=14% Similarity=0.113 Sum_probs=150.8
Q ss_pred ceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccc
Q 012630 76 QLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPI 153 (459)
Q Consensus 76 qL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~ 153 (459)
+|+++|. ++..++++.. ..+..++|||||++|+|++.+. ...++|+++++++..+.++..+.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~----------~~~~l~~~~l~~g~~~~l~~~~g------ 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ----------KRPRIFVQNLDTGRREQITNFEG------ 243 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC----------CCCEEEEEECCCCCEEEccCCCC------
Confidence 6999999 5577777654 4557999999999999997431 23578999999888887776432
Q ss_pred cccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEE
Q 012630 154 AYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQ 233 (459)
Q Consensus 154 ~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~ 233 (459)
....+.|||||+ .|+|+...++ ...||++++ .+++.+.|+........+.|++||..|++
T Consensus 244 -------~~~~~~~SpDG~-~la~~~~~~g---------~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~~spDg~~i~f 303 (430)
T PRK00178 244 -------LNGAPAWSPDGS-KLAFVLSKDG---------NPEIYVMDL---ASRQLSRVTNHPAIDTEPFWGKDGRTLYF 303 (430)
T ss_pred -------CcCCeEECCCCC-EEEEEEccCC---------CceEEEEEC---CCCCeEEcccCCCCcCCeEECCCCCEEEE
Confidence 112569999999 7887754322 247999988 66688888765544566899999866665
Q ss_pred EeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcc
Q 012630 234 ETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVP 313 (459)
Q Consensus 234 ~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~ 313 (459)
... .....++|.+++.+++ .+.++... .+. ....+++||+++++... .++ ..
T Consensus 304 ~s~-~~g~~~iy~~d~~~g~--~~~lt~~~---~~~----~~~~~Spdg~~i~~~~~-----------------~~~-~~ 355 (430)
T PRK00178 304 TSD-RGGKPQIYKVNVNGGR--AERVTFVG---NYN----ARPRLSADGKTLVMVHR-----------------QDG-NF 355 (430)
T ss_pred EEC-CCCCceEEEEECCCCC--EEEeecCC---CCc----cceEECCCCCEEEEEEc-----------------cCC-ce
Confidence 443 2345689999987653 34443111 111 12346888886654321 111 23
Q ss_pred eEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeeccc
Q 012630 314 FLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 314 ~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~ 387 (459)
.|+.+|+.+++.+.+...... +.. .++.|+..++++..... -..+|+++..++..++|+.
T Consensus 356 ~l~~~dl~tg~~~~lt~~~~~---~~p----------~~spdg~~i~~~~~~~g-~~~l~~~~~~g~~~~~l~~ 415 (430)
T PRK00178 356 HVAAQDLQRGSVRILTDTSLD---ESP----------SVAPNGTMLIYATRQQG-RGVLMLVSINGRVRLPLPT 415 (430)
T ss_pred EEEEEECCCCCEEEccCCCCC---CCc----------eECCCCCEEEEEEecCC-ceEEEEEECCCCceEECcC
Confidence 588899998887776433211 111 14556677777765432 2468898875555555653
No 11
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.2e-13 Score=142.22 Aligned_cols=189 Identities=15% Similarity=0.134 Sum_probs=130.5
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++|+ +|+.++|+. ++....+.|||||++|+|+..+. ...++|++|++|+..++|+..+..+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~----------g~~~Iy~~dl~~g~~~~LT~~~~~d~- 280 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK----------GQPDIYLYDTNTKTLTQITNYPGIDV- 280 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC----------CCcEEEEEECCCCcEEEcccCCCccC-
Confidence 579999999 999999986 45556799999999999997431 24789999999998999988654332
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
...|||||+ .|+|+... .+ ..+||++++ ++|+.+.++.... ....|||||..|
T Consensus 281 ------------~p~~SPDG~-~I~F~Sdr-~g--------~~~Iy~~dl---~~g~~~rlt~~g~--~~~~~SPDG~~I 333 (419)
T PRK04043 281 ------------NGNFVEDDK-RIVFVSDR-LG--------YPNIFMKKL---NSGSVEQVVFHGK--NNSSVSTYKNYI 333 (419)
T ss_pred ------------ccEECCCCC-EEEEEECC-CC--------CceEEEEEC---CCCCeEeCccCCC--cCceECCCCCEE
Confidence 348999999 88888532 11 348999999 7778888875322 246999998655
Q ss_pred EEEeecC-----CccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCC
Q 012630 232 VQETWFK-----TTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGA 306 (459)
Q Consensus 232 ~~~~~~~-----~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~ 306 (459)
++..... ....+||++++++++ .+.|+.... + . ...++|||+.|++...
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~~~-~-----~--~p~~SPDG~~I~f~~~---------------- 387 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTANGV-N-----Q--FPRFSSDGGSIMFIKY---------------- 387 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCCCC-c-----C--CeEECCCCCEEEEEEc----------------
Confidence 5543211 133789999998653 577754210 0 1 2357899987755431
Q ss_pred CCCCCcceEEEEECCCCceEEE
Q 012630 307 TPEGDVPFLDLFNINTGSKERI 328 (459)
Q Consensus 307 s~~gd~~~l~~~~l~tg~~~~l 328 (459)
.++...|+.+++++....++
T Consensus 388 --~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 388 --LGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred --cCCcEEEEEEecCCCeeEEe
Confidence 23334577788775544444
No 12
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.6e-13 Score=140.58 Aligned_cols=191 Identities=20% Similarity=0.194 Sum_probs=128.7
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++++ +|+.++++. ++....++|||||++|+|+.... ...++|++|++++..++++....
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~----------g~~~I~~~d~~tg~~~~lt~~~~---- 287 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT----------GSLNLYVMDLASGQIRQVTDGRS---- 287 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC----------CCcEEEEEECCCCCEEEccCCCC----
Confidence 468999999 889888876 45556899999999999986321 23469999999888888876432
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
....+.|+|||+ .|+|+... .+ ..+||.++. ++++.+.|+........+.|+|||..|
T Consensus 288 ---------~~~~~~wSPDG~-~I~f~s~~-~g--------~~~Iy~~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 288 ---------NNTEPTWFPDSQ-NLAYTSDQ-AG--------RPQVYKVNI---NGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred ---------CcCceEECCCCC-EEEEEeCC-CC--------CceEEEEEC---CCCCeEEeecCCCCccCEEECCCCCEE
Confidence 223679999999 88887532 11 347999988 776888887544445668999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++... +....++|++++++++ .+.|+... .+ .. ..+++||+.|++... ++.
T Consensus 346 a~~~~-~~g~~~I~~~dl~~g~--~~~Lt~~~-~~-----~~--p~~SpDG~~i~~~s~------------------~~~ 396 (429)
T PRK03629 346 VMVSS-NGGQQHIAKQDLATGG--VQVLTDTF-LD-----ET--PSIAPNGTMVIYSSS------------------QGM 396 (429)
T ss_pred EEEEc-cCCCceEEEEECCCCC--eEEeCCCC-CC-----CC--ceECCCCCEEEEEEc------------------CCC
Confidence 55432 2345689999987653 46665211 01 11 246899887755431 222
Q ss_pred cceEEEEECCCCceEEEe
Q 012630 312 VPFLDLFNINTGSKERIW 329 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~ 329 (459)
...|+.++++++..+++.
T Consensus 397 ~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 397 GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred ceEEEEEECCCCCeEECc
Confidence 334667777655555553
No 13
>PRK10115 protease 2; Provisional
Probab=99.57 E-value=4.3e-12 Score=138.19 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=66.8
Q ss_pred CCCEEEEEeecCCCCcceEEEECCCcceeecccccCC-CCCCcCCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceE
Q 012630 355 NQLKILTSKESKTEITQYWIQSWPHKKCRQITDFPHP-YPLLSTLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLC 433 (459)
Q Consensus 355 d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~~~~-~~~~~~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~ 433 (459)
+++++++..+|+++|+++|.++..+++.+.|+..+.+ +... ..++|.|+|++.||++|++||+.|++.... ++.|+
T Consensus 371 ~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~-~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~--~~~P~ 447 (686)
T PRK10115 371 ETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAA-NYRSEHLWITARDGVEVPVSLVYHRKHFRK--GHNPL 447 (686)
T ss_pred CCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCcc-ccEEEEEEEECCCCCEEEEEEEEECCCCCC--CCCCE
Confidence 4568999999999999999999988888888876544 4333 459999999999999999988876654322 36899
Q ss_pred EEEEcC
Q 012630 434 LFWAYP 439 (459)
Q Consensus 434 Il~~Yp 439 (459)
||++|.
T Consensus 448 ll~~hG 453 (686)
T PRK10115 448 LVYGYG 453 (686)
T ss_pred EEEEEC
Confidence 999998
No 14
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=8.1e-13 Score=137.57 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=115.8
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++++ +|+.++++. ++....++|||||++|+|+.... ...++|++|+++++.++|+.....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~----------g~~~Iy~~dl~tg~~~~lt~~~~~--- 307 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD----------GQPEIYVVDIATKALTRITRHRAI--- 307 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC----------CCeEEEEEECCCCCeEECccCCCC---
Confidence 479999999 888888886 44456899999999999986431 236799999998888888764221
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
...+.|||||+ .|+|+... .+ ..+||.+++ .+++.+.|+........+.|++||..|
T Consensus 308 ----------~~~p~wSpDG~-~I~f~s~~-~g--------~~~Iy~~dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 308 ----------DTEPSWHPDGK-SLIFTSER-GG--------KPQIYRVNL---ASGKVSRLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred ----------ccceEECCCCC-EEEEEECC-CC--------CceEEEEEC---CCCCEEEEecCCCCCcCeeECCCCCEE
Confidence 12569999999 78777432 11 247999988 666888886433334457999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEE
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAK 288 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~ 288 (459)
++... +....+||++++++++ .++|+.... + ..| .+++||+.|++.
T Consensus 365 ~~~~~-~~g~~~I~~~dl~~g~--~~~lt~~~~-d-----~~p--s~spdG~~I~~~ 410 (448)
T PRK04792 365 IMVNR-TNGKFNIARQDLETGA--MQVLTSTRL-D-----ESP--SVAPNGTMVIYS 410 (448)
T ss_pred EEEEe-cCCceEEEEEECCCCC--eEEccCCCC-C-----CCc--eECCCCCEEEEE
Confidence 65443 2455789999987653 465542211 1 112 468888877554
No 15
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=8.7e-13 Score=136.78 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=116.3
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++++ +|+.++++. .+....++|||||++|+|+..+. ...++|++|++++..++|+..+..+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~----------g~~~Iy~~d~~~~~~~~lt~~~~~~-- 289 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD----------GNPEIYVMDLASRQLSRVTNHPAID-- 289 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC----------CCceEEEEECCCCCeEEcccCCCCc--
Confidence 468999999 888888886 44556899999999999986431 2367999999988888887643221
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
..+.|+|||+ .|+|+... .+ ..+||.+++ .+++.+.|+........+.|++||..|
T Consensus 290 -----------~~~~~spDg~-~i~f~s~~-~g--------~~~iy~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 290 -----------TEPFWGKDGR-TLYFTSDR-GG--------KPQIYKVNV---NGGRAERVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred -----------CCeEECCCCC-EEEEEECC-CC--------CceEEEEEC---CCCCEEEeecCCCCccceEECCCCCEE
Confidence 2469999999 78877422 11 247999987 666888776443344567999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEE
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAK 288 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~ 288 (459)
++... ..+..+||++++.+++ .++|++... + ..+ .+++||+.+++.
T Consensus 346 ~~~~~-~~~~~~l~~~dl~tg~--~~~lt~~~~-~-----~~p--~~spdg~~i~~~ 391 (430)
T PRK00178 346 VMVHR-QDGNFHVAAQDLQRGS--VRILTDTSL-D-----ESP--SVAPNGTMLIYA 391 (430)
T ss_pred EEEEc-cCCceEEEEEECCCCC--EEEccCCCC-C-----CCc--eECCCCCEEEEE
Confidence 65442 2345679999988653 466653211 1 112 468888876554
No 16
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=9e-13 Score=136.30 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=126.6
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEE--EecCC---ceeeeeeccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQV--WTADG---KFVRQLCELP 146 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v--~d~~g---~~~~~lt~~p 146 (459)
..|||++++ +|+.++++. ++....++|||||++|+|++.... ..++++ +++++ +..++|+...
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~ 279 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEA 279 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCC----------CcceeEEEeecccCCCCcceEeecCC
Confidence 579999999 889999987 455568999999999999974321 124555 45442 4556676532
Q ss_pred ccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCC
Q 012630 147 LVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCD 226 (459)
Q Consensus 147 ~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~ 226 (459)
.. ....+.|||||+ .|+|+...+ | ..+||.++. .-.+++++.|+........+.|||
T Consensus 280 ~~------------~~~~p~wSPDG~-~Laf~s~~~-g--------~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 280 FG------------TQGNPSFSPDGT-RLVFVSNKD-G--------RPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred CC------------CcCCeEECCCCC-EEEEEECCC-C--------CceEEEEEC-cccccceEEeccCCCCccceeECC
Confidence 10 112569999999 888875322 1 236888876 112346777876555567789999
Q ss_pred CCcEEEEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCC
Q 012630 227 DSLALVQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGA 306 (459)
Q Consensus 227 D~~al~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~ 306 (459)
||..|++... +....+||++++++++ .+.|+...... .. ..+++||+.|++...
T Consensus 337 DG~~Laf~~~-~~g~~~I~v~dl~~g~--~~~Lt~~~~~~-----~~--p~wSpDG~~L~f~~~---------------- 390 (428)
T PRK01029 337 DGKKIAFCSV-IKGVRQICVYDLATGR--DYQLTTSPENK-----ES--PSWAIDSLHLVYSAG---------------- 390 (428)
T ss_pred CCCEEEEEEc-CCCCcEEEEEECCCCC--eEEccCCCCCc-----cc--eEECCCCCEEEEEEC----------------
Confidence 9866665442 2345689999998654 46664321110 11 246888886654321
Q ss_pred CCCCCcceEEEEECCCCceEEEeecC
Q 012630 307 TPEGDVPFLDLFNINTGSKERIWESD 332 (459)
Q Consensus 307 s~~gd~~~l~~~~l~tg~~~~l~~~~ 332 (459)
.+....|+.+|+++++.++|....
T Consensus 391 --~~g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 391 --NSNESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred --CCCCceEEEEECCCCCEEEeecCC
Confidence 111245888898888887776543
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.8e-12 Score=134.24 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=114.7
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++++ +|+.++++. ++....++|||||++|+|+.... ...++|++|++++..++|+.....+
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~----------g~~~Iy~~d~~~~~~~~lt~~~~~~-- 286 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRD----------GNSQIYTVNADGSGLRRLTQSSGID-- 286 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC----------CCceEEEEECCCCCcEECCCCCCCC--
Confidence 468999999 888888874 55567899999999999986431 2467899999888888887643211
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
..+.|||||+ .|+|+... .| ..+||.++. ++++.+.++........+.|||||..|
T Consensus 287 -----------~~~~wSpDG~-~l~f~s~~-~g--------~~~Iy~~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 287 -----------TEPFFSPDGR-SIYFTSDR-GG--------APQIYRMPA---SGGAAQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred -----------cCeEEcCCCC-EEEEEecC-CC--------CcEEEEEEC---CCCceEEEecCCCCcCceEECCCCCEE
Confidence 2468999999 78876421 22 347999987 666777776433334568999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEe
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKI 289 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~ 289 (459)
++... ..+..+||++++.+++ .+.++.... .-...+++||+.+++..
T Consensus 343 a~~s~-~~g~~~I~v~d~~~g~--~~~lt~~~~--------~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 343 AYISR-VGGAFKLYVQDLATGQ--VTALTDTTR--------DESPSFAPNGRYILYAT 389 (427)
T ss_pred EEEEc-cCCcEEEEEEECCCCC--eEEccCCCC--------ccCceECCCCCEEEEEE
Confidence 65442 2344689999987643 355542211 01225788888775543
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.1e-12 Score=134.04 Aligned_cols=190 Identities=18% Similarity=0.175 Sum_probs=126.0
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++++ +|+.++++. ++....++|||||++|+|+.... ...++|++|++++..++++.....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~----------g~~~Iy~~d~~~g~~~~lt~~~~~--- 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD----------GNPEIYVMDLGSRQLTRLTNHFGI--- 293 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC----------CCceEEEEECCCCCeEECccCCCC---
Confidence 578999999 888888875 44556899999999999986431 236799999998888888764221
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
...+.|+|||+ .|+|+...+ | ..+||.+++ .+++.+.|+........+.|++||..|
T Consensus 294 ----------~~~~~~spDG~-~l~f~sd~~-g--------~~~iy~~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 294 ----------DTEPTWAPDGK-SIYFTSDRG-G--------RPQIYRVAA---SGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred ----------ccceEECCCCC-EEEEEECCC-C--------CceEEEEEC---CCCCeEEeecCCCCccCEEECCCCCEE
Confidence 12469999999 888875321 1 247999988 666777777544344568999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++... +....+|+++++.+++ .+.|+.... + .. ..+++||+.+++... .++
T Consensus 351 a~~~~-~~~~~~I~v~d~~~g~--~~~Lt~~~~-~-----~~--p~~spdG~~i~~~s~------------------~~g 401 (433)
T PRK04922 351 AMVHG-SGGQYRIAVMDLSTGS--VRTLTPGSL-D-----ES--PSFAPNGSMVLYATR------------------EGG 401 (433)
T ss_pred EEEEC-CCCceeEEEEECCCCC--eEECCCCCC-C-----CC--ceECCCCCEEEEEEe------------------cCC
Confidence 55432 2345689999987643 455542211 1 01 246888887655431 122
Q ss_pred cceEEEEECCCCceEEE
Q 012630 312 VPFLDLFNINTGSKERI 328 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l 328 (459)
+..|+.++++++..+++
T Consensus 402 ~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 402 RGVLAAVSTDGRVRQRL 418 (433)
T ss_pred ceEEEEEECCCCceEEc
Confidence 34577777765554444
No 19
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.2e-12 Score=129.08 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=144.6
Q ss_pred cceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccc
Q 012630 75 TQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIP 152 (459)
Q Consensus 75 sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P 152 (459)
++||++|. ++..+.++.. ..+.+++|||||++|+|++.. ....++++||+.++..+.++..+..
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~----------~~~~~i~i~dl~tg~~~~l~~~~g~---- 249 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFE----------NKKSQLVVHDLRSGARKVVASFRGH---- 249 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEec----------CCCcEEEEEeCCCCceEEEecCCCc----
Confidence 68999999 4466777763 456899999999999999742 1235689999988777777654321
Q ss_pred ccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEE
Q 012630 153 IAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALV 232 (459)
Q Consensus 153 ~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~ 232 (459)
...+.|||||+ .|+++...++ .-.||.++. ++++.+.|+........+.|+|||..|+
T Consensus 250 ---------~~~~~wSPDG~-~La~~~~~~g---------~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 250 ---------NGAPAFSPDGS-RLAFASSKDG---------VLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred ---------cCceeECCCCC-EEEEEEecCC---------cEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCCEEE
Confidence 12469999999 8887753322 125899987 6668888887655567799999986666
Q ss_pred EEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCc
Q 012630 233 QETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDV 312 (459)
Q Consensus 233 ~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~ 312 (459)
+... .....++|.++..++. .+.+. .. .+ ...+++||+++++. +. +
T Consensus 308 f~s~-~~g~~~I~~~~~~~~~--~~~l~-~~---~~------~~~~SpDG~~ia~~--------------~~----~--- 353 (429)
T PRK01742 308 FTSD-RSGSPQVYRMSASGGG--ASLVG-GR---GY------SAQISADGKTLVMI--------------NG----D--- 353 (429)
T ss_pred EEEC-CCCCceEEEEECCCCC--eEEec-CC---CC------CccCCCCCCEEEEE--------------cC----C---
Confidence 5443 2456789999886532 24431 11 01 12358888865433 21 1
Q ss_pred ceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeecccc
Q 012630 313 PFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITDF 388 (459)
Q Consensus 313 ~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~ 388 (459)
.++++|+.+|+.+.+.... . .+.+ .++.++..+++... ...-..+++.+..++..++|+..
T Consensus 354 -~i~~~Dl~~g~~~~lt~~~-~--~~~~----------~~sPdG~~i~~~s~-~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 354 -NVVKQDLTSGSTEVLSSTF-L--DESP----------SISPNGIMIIYSST-QGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred -CEEEEECCCCCeEEecCCC-C--CCCc----------eECCCCCEEEEEEc-CCCceEEEEEECCCCceEEccCC
Confidence 2566888888766553221 1 1111 13455566666543 33344566767554556667643
No 20
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=5e-11 Score=122.86 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=145.2
Q ss_pred hcceEEEcC-CCceeecCCCc-eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGPPA-IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~~~-~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
..+||++|. ++..++++... ....+.|||||++|+|++... ...+++++|+.++..+.++..+.
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~----------~~~~i~v~d~~~g~~~~~~~~~~---- 234 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES----------GKPEIYVQDLATGQREKVASFPG---- 234 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC----------CCcEEEEEECCCCCEEEeecCCC----
Confidence 446999999 56788888754 467899999999999996431 12578999998776666654321
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
....+.|+|||+ .|+++...++ ...||.++. .++..+.|+........+.|++||..|
T Consensus 235 ---------~~~~~~~spDg~-~l~~~~~~~~---------~~~i~~~d~---~~~~~~~l~~~~~~~~~~~~s~dg~~l 292 (417)
T TIGR02800 235 ---------MNGAPAFSPDGS-KLAVSLSKDG---------NPDIYVMDL---DGKQLTRLTNGPGIDTEPSWSPDGKSI 292 (417)
T ss_pred ---------CccceEECCCCC-EEEEEECCCC---------CccEEEEEC---CCCCEEECCCCCCCCCCEEECCCCCEE
Confidence 122469999999 7777643221 346898887 655777777544334567999998666
Q ss_pred EEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGD 311 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd 311 (459)
++...+ ....++|.+++.+++ .+.+.... .+ .....++++|+++++... ++.
T Consensus 293 ~~~s~~-~g~~~iy~~d~~~~~--~~~l~~~~---~~----~~~~~~spdg~~i~~~~~------------------~~~ 344 (417)
T TIGR02800 293 AFTSDR-GGSPQIYMMDADGGE--VRRLTFRG---GY----NASPSWSPDGDLIAFVHR------------------EGG 344 (417)
T ss_pred EEEECC-CCCceEEEEECCCCC--EEEeecCC---CC----ccCeEECCCCCEEEEEEc------------------cCC
Confidence 554432 344589999987543 24443111 00 112246788776654431 112
Q ss_pred cceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeeccc
Q 012630 312 VPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 312 ~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~ 387 (459)
...|+.+|+.++..+.+.... ..+.. .++.+++.+++....... ..+|+.+..++..++|+.
T Consensus 345 ~~~i~~~d~~~~~~~~l~~~~---~~~~p----------~~spdg~~l~~~~~~~~~-~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLTDTG---LDESP----------SFAPNGRMILYATTRGGR-GVLGLVSTDGRFRARLPL 406 (417)
T ss_pred ceEEEEEeCCCCCeEEccCCC---CCCCc----------eECCCCCEEEEEEeCCCc-EEEEEEECCCceeeECCC
Confidence 335778888877666553321 11111 134556778777665443 578888865444555553
No 21
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.43 E-value=2e-11 Score=123.38 Aligned_cols=265 Identities=15% Similarity=0.184 Sum_probs=156.8
Q ss_pred hhcceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 73 TTTQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
..+.+|+.|+ +++.++++.+ .....+.|||||++|+|+.. .++|+.++.++...+||... .+.
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~--------------~nly~~~~~~~~~~~lT~dg-~~~ 85 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD--------------NNLYLRDLATGQETQLTTDG-EPG 85 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET--------------TEEEEESSTTSEEEESES---TTT
T ss_pred cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec--------------CceEEEECCCCCeEEecccc-cee
Confidence 5678999999 9999999986 55679999999999999963 57999998888999999843 111
Q ss_pred c----c--ccccccccceeeeEEecCCCceEEEEEeccCCcccccc------------------------CCCCeEEecc
Q 012630 151 I----P--IAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEV------------------------SPRDIIYTQP 200 (459)
Q Consensus 151 ~----P--~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~------------------------~~~~~l~~~~ 200 (459)
. | +-..-+-.....+.|||||+ .|+|.+..+..-+.... ...-.|++++
T Consensus 86 i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~ 164 (353)
T PF00930_consen 86 IYNGVPDWVYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVD 164 (353)
T ss_dssp EEESB--HHHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEE
T ss_pred EEcCccceeccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEE
Confidence 1 1 00000012246789999999 88888766544222110 0112555555
Q ss_pred CCCCCCCCceEec------cccceeccceeCCCCc-EEEEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCC
Q 012630 201 AEPVEGEEPEILH------KLDLRFRGVSWCDDSL-ALVQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGL 273 (459)
Q Consensus 201 ~~pf~g~~~~~L~------~~~~~~~~~~Ws~D~~-al~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~ 273 (459)
+ .+++.+.+. ..+..+..+.|++|+. +++....|..+..+++.++++++.. +++. ....+.+.+...
T Consensus 165 ~---~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~--~~~~-~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 165 L---ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET--RVVL-EETSDGWVDVYD 238 (353)
T ss_dssp S---SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC--EEEE-EEESSSSSSSSS
T ss_pred C---CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce--eEEE-EecCCcceeeec
Confidence 5 443433322 1233356789999875 4444445667889999999877543 4443 222223333222
Q ss_pred CCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccc
Q 012630 274 PMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVN 353 (459)
Q Consensus 274 ~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 353 (459)
......++|. .+++... ..+..+|+.+++.++..+.|..++.. +..+..+ +..
T Consensus 239 ~~~~~~~~~~--------------~~l~~s~----~~G~~hly~~~~~~~~~~~lT~G~~~--V~~i~~~-d~~------ 291 (353)
T PF00930_consen 239 PPHFLGPDGN--------------EFLWISE----RDGYRHLYLYDLDGGKPRQLTSGDWE--VTSILGW-DED------ 291 (353)
T ss_dssp EEEE-TTTSS--------------EEEEEEE----TTSSEEEEEEETTSSEEEESS-SSS---EEEEEEE-ECT------
T ss_pred ccccccCCCC--------------EEEEEEE----cCCCcEEEEEcccccceeccccCcee--ecccceE-cCC------
Confidence 2211223333 3333331 22367999999998888877666542 3334433 332
Q ss_pred cCCCEEEEEeecCCCCc--ceEEEECC-Ccceeeccccc
Q 012630 354 LNQLKILTSKESKTEIT--QYWIQSWP-HKKCRQITDFP 389 (459)
Q Consensus 354 ~d~~~i~~~~~s~~~P~--ely~~~~~-~g~~~~LT~~~ 389 (459)
++.|.|+... .+|. .||..+++ +++.++||...
T Consensus 292 --~~~iyf~a~~-~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 292 --NNRIYFTANG-DNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp --SSEEEEEESS-GGTTSBEEEEEETTETTEEEESSTTS
T ss_pred --CCEEEEEecC-CCCCceEEEEEEeCCCCCeEeccCCC
Confidence 4677776644 4455 48888988 78999999753
No 22
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.31 E-value=9.2e-11 Score=120.35 Aligned_cols=148 Identities=20% Similarity=0.131 Sum_probs=111.8
Q ss_pred cceEEEcC-CCceeecC-CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccc
Q 012630 75 TQLVLATL-DGTVKEFG-PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIP 152 (459)
Q Consensus 75 sqL~~v~~-~G~~~~l~-~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P 152 (459)
++++++++ +|+...+. .++....++|||||++|+|+..+. ...++|++|+.|+..++|++.+..+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd----------g~~~iy~~dl~~~~~~~Lt~~~gi~~-- 285 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD----------GSPDIYLMDLDGKNLPRLTNGFGINT-- 285 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC----------CCccEEEEcCCCCcceecccCCcccc--
Confidence 78999999 66555544 477778999999999999998552 35789999999999888888765444
Q ss_pred ccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEE
Q 012630 153 IAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALV 232 (459)
Q Consensus 153 ~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~ 232 (459)
..+|+|||+ .|+|+. |.++ +..||.++. +|+..+.++........+.|+|||..|+
T Consensus 286 -----------~Ps~spdG~-~ivf~S--dr~G-------~p~I~~~~~---~g~~~~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 286 -----------SPSWSPDGS-KIVFTS--DRGG-------RPQIYLYDL---EGSQVTRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred -----------CccCCCCCC-EEEEEe--CCCC-------CcceEEECC---CCCceeEeeccCCCCcCccCCCCCCEEE
Confidence 349999999 888883 3332 458999999 8888888887766667899999997777
Q ss_pred EEeecCCccEEEEEEcCCCCCCCceEEe
Q 012630 233 QETWFKTTQTRTWLISPGSKDTAPLILF 260 (459)
Q Consensus 233 ~~~~~~~~~~~ly~v~~~~~~~~~~~l~ 260 (459)
++.. .....++...++.++.. .++|.
T Consensus 342 ~~~~-~~g~~~i~~~~~~~~~~-~~~lt 367 (425)
T COG0823 342 FESS-SGGQWDIDKNDLASGGK-IRILT 367 (425)
T ss_pred EEec-cCCceeeEEeccCCCCc-EEEcc
Confidence 6652 23346677777765442 45553
No 23
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.5e-08 Score=105.09 Aligned_cols=203 Identities=11% Similarity=0.117 Sum_probs=125.9
Q ss_pred CCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccC
Q 012630 104 QKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDG 183 (459)
Q Consensus 104 G~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~ 183 (459)
+++|+|++.+..-+ ...+++++|.+|...+.|+.... ....+.|||||+ .|+|+...+
T Consensus 168 ~~ria~v~~~~~~~-------~~~~i~i~d~dg~~~~~lt~~~~-------------~v~~p~wSPDG~-~la~~s~~~- 225 (429)
T PRK01742 168 RTRIAYVVQKNGGS-------QPYEVRVADYDGFNQFIVNRSSQ-------------PLMSPAWSPDGS-KLAYVSFEN- 225 (429)
T ss_pred CCEEEEEEEEcCCC-------ceEEEEEECCCCCCceEeccCCC-------------ccccceEcCCCC-EEEEEEecC-
Confidence 67888886432111 12678999999887777766321 234679999999 888875321
Q ss_pred CccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEEEEcCCCCCCCceEEeecC
Q 012630 184 GAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPGSKDTAPLILFDRS 263 (459)
Q Consensus 184 g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~ 263 (459)
+ +..||.++. .+++.+.+.........+.|+|||..|++... ..+..+||.+++.++. .+.++...
T Consensus 226 ~--------~~~i~i~dl---~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~-~~g~~~Iy~~d~~~~~--~~~lt~~~ 291 (429)
T PRK01742 226 K--------KSQLVVHDL---RSGARKVVASFRGHNGAPAFSPDGSRLAFASS-KDGVLNIYVMGANGGT--PSQLTSGA 291 (429)
T ss_pred C--------CcEEEEEeC---CCCceEEEecCCCccCceeECCCCCEEEEEEe-cCCcEEEEEEECCCCC--eEeeccCC
Confidence 1 347899988 65577777765545567899999866655432 2456789999987543 35554322
Q ss_pred CCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECCCCceEEEeecCcccceEEEEEe
Q 012630 264 SEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNINTGSKERIWESDKEKYYETAVAL 343 (459)
Q Consensus 264 ~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~ 343 (459)
..+ ....+++||+.+++. +. ....+.|+.+++.++..+++ ... .+. .
T Consensus 292 ~~~-------~~~~wSpDG~~i~f~--------------s~----~~g~~~I~~~~~~~~~~~~l-~~~---~~~--~-- 338 (429)
T PRK01742 292 GNN-------TEPSWSPDGQSILFT--------------SD----RSGSPQVYRMSASGGGASLV-GGR---GYS--A-- 338 (429)
T ss_pred CCc-------CCEEECCCCCEEEEE--------------EC----CCCCceEEEEECCCCCeEEe-cCC---CCC--c--
Confidence 111 123568888765433 21 11235688888877666554 221 110 1
Q ss_pred ecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeeccc
Q 012630 344 NLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 344 ~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~ 387 (459)
.++.|+..+++... ..++++++.+|+.++|+.
T Consensus 339 -------~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 339 -------QISADGKTLVMING-----DNVVKQDLTSGSTEVLSS 370 (429)
T ss_pred -------cCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecC
Confidence 13556677777543 368889988888877774
No 24
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.12 E-value=8.3e-09 Score=106.33 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=111.9
Q ss_pred cceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccc
Q 012630 75 TQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIP 152 (459)
Q Consensus 75 sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P 152 (459)
.+|+++++ +|+.+.+.. .+....+.|||||++|+|+.... ...++|++++.++..++++.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~----------~~~~i~~~d~~~~~~~~l~~~~~~---- 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD----------GNPDIYVMDLDGKQLTRLTNGPGI---- 279 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC----------CCccEEEEECCCCCEEECCCCCCC----
Confidence 68999999 787777765 34446799999999999985321 235789999988877777654221
Q ss_pred ccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEE
Q 012630 153 IAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALV 232 (459)
Q Consensus 153 ~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~ 232 (459)
...+.|+|||+ .|+|+... .+ ...||.+++ .+++.+.|+........+.|++||..|+
T Consensus 280 ---------~~~~~~s~dg~-~l~~~s~~-~g--------~~~iy~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 280 ---------DTEPSWSPDGK-SIAFTSDR-GG--------SPQIYMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred ---------CCCEEECCCCC-EEEEEECC-CC--------CceEEEEEC---CCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 12458999999 78776422 11 237999988 6667777765444456789999986666
Q ss_pred EEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEe
Q 012630 233 QETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKI 289 (459)
Q Consensus 233 ~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~ 289 (459)
+... +....++|.+++.++. .+++.+... . .. ..+++||+.+++..
T Consensus 338 ~~~~-~~~~~~i~~~d~~~~~--~~~l~~~~~-~-----~~--p~~spdg~~l~~~~ 383 (417)
T TIGR02800 338 FVHR-EGGGFNIAVMDLDGGG--ERVLTDTGL-D-----ES--PSFAPNGRMILYAT 383 (417)
T ss_pred EEEc-cCCceEEEEEeCCCCC--eEEccCCCC-C-----CC--ceECCCCCEEEEEE
Confidence 5442 2356789999987642 355542111 0 11 14678888775543
No 25
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.10 E-value=2.6e-09 Score=109.73 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=123.3
Q ss_pred hhcceEEEcCCCc-eeecCCCc-eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 73 TTTQLVLATLDGT-VKEFGPPA-IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 73 ~~sqL~~v~~~G~-~~~l~~~~-~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
...+|++.|-+|. .+.++... ....+.|||||+.|+|++.. .+...++++++++.+....+...+....
T Consensus 171 ~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~---------~~~~~~i~~~~l~~g~~~~i~~~~g~~~ 241 (425)
T COG0823 171 LPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFE---------LGGCPRIYYLDLNTGKRPVILNFNGNNG 241 (425)
T ss_pred CCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEe---------cCCCceEEEEeccCCccceeeccCCccC
Confidence 5679999998664 55566544 44689999999999999632 1112568999998777777777666555
Q ss_pred ccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcE
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLA 230 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~a 230 (459)
.| .|||||+ +|+|+...|+ .-.||+++. .++..+.|+........+.|+|||..
T Consensus 242 ~P-------------~fspDG~-~l~f~~~rdg---------~~~iy~~dl---~~~~~~~Lt~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 242 AP-------------AFSPDGS-KLAFSSSRDG---------SPDIYLMDL---DGKNLPRLTNGFGINTSPSWSPDGSK 295 (425)
T ss_pred Cc-------------cCCCCCC-EEEEEECCCC---------CccEEEEcC---CCCcceecccCCccccCccCCCCCCE
Confidence 44 9999998 9999987663 237999999 77777778887777778999999977
Q ss_pred EEEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEe
Q 012630 231 LVQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKI 289 (459)
Q Consensus 231 l~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~ 289 (459)
|++...+ .+...||+++++++. ++.++..-... ....+++||+++++..
T Consensus 296 ivf~Sdr-~G~p~I~~~~~~g~~--~~riT~~~~~~-------~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 296 IVFTSDR-GGRPQIYLYDLEGSQ--VTRLTFSGGGN-------SNPVWSPDGDKIVFES 344 (425)
T ss_pred EEEEeCC-CCCcceEEECCCCCc--eeEeeccCCCC-------cCccCCCCCCEEEEEe
Confidence 7776543 567799999998643 34443211111 1234699999887654
No 26
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.04 E-value=1.2e-08 Score=103.22 Aligned_cols=247 Identities=14% Similarity=0.126 Sum_probs=138.9
Q ss_pred HHHHhhcceEEEcC-CCceeecCCCc-------------------eeeecccCCCCCeEEEEEecc----Ccccc-----
Q 012630 69 FEHYTTTQLVLATL-DGTVKEFGPPA-------------------IYTAVEPSPDQKYILITSIDR----PYSFT----- 119 (459)
Q Consensus 69 f~~~~~sqL~~v~~-~G~~~~l~~~~-------------------~~~~~~~SPDG~~l~~~~~~~----p~s~~----- 119 (459)
+.|.....||+.++ +|+.++||..+ ....+.|||||++|||..... .+.+.
T Consensus 57 ~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 57 IAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP 136 (353)
T ss_dssp EEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS
T ss_pred eEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCc
Confidence 33555678999998 88889998743 124667999999999998542 11110
Q ss_pred ---------ccc----CC-CCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCc
Q 012630 120 ---------VSY----TK-FPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGA 185 (459)
Q Consensus 120 ---------v~~----~~-~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~ 185 (459)
+++ .. -.-+++|+|++++....+.... .......-...+.|++|+. .|++.... ...
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~-------~~~~~~~yl~~v~W~~d~~-~l~~~~~n-R~q 207 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN-------SLNPQDYYLTRVGWSPDGK-RLWVQWLN-RDQ 207 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H-------HHHTSSEEEEEEEEEETTE-EEEEEEEE-TTS
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc-------ccCCCccCcccceecCCCc-EEEEEEcc-cCC
Confidence 000 00 1256777888877665443320 0011233446889999988 45554432 211
Q ss_pred cccccCCCCeEEeccCCCCCCCCceEecc-cc-ce---ecccee-CCCCcEEEEEeecCCccEEEEEEcCCCCCCCceEE
Q 012630 186 AKVEVSPRDIIYTQPAEPVEGEEPEILHK-LD-LR---FRGVSW-CDDSLALVQETWFKTTQTRTWLISPGSKDTAPLIL 259 (459)
Q Consensus 186 ~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~-~~---~~~~~W-s~D~~al~~~~~~~~~~~~ly~v~~~~~~~~~~~l 259 (459)
.+-.|+.+++ ..++.+.+.. .. .- ...+.+ ++++..|+.-.. ++++.|||.++.+++. ++.|
T Consensus 208 ------~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~--~~~l 275 (353)
T PF00930_consen 208 ------NRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGK--PRQL 275 (353)
T ss_dssp ------TEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSE--EEES
T ss_pred ------CEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccc--eecc
Confidence 1234556665 3345555543 11 11 122343 366544444333 4679999999987542 4555
Q ss_pred eecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECC-CCceEEEeecCcccceE
Q 012630 260 FDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNIN-TGSKERIWESDKEKYYE 338 (459)
Q Consensus 260 ~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~-tg~~~~l~~~~~~~~~e 338 (459)
+..+ ... ..++... .+++.||+++.+.. -...+|++++++ +++.++|....+. .+
T Consensus 276 T~G~----------~~V------~~i~~~d----~~~~~iyf~a~~~~--p~~r~lY~v~~~~~~~~~~LT~~~~~-~~- 331 (353)
T PF00930_consen 276 TSGD----------WEV------TSILGWD----EDNNRIYFTANGDN--PGERHLYRVSLDSGGEPKCLTCEDGD-HY- 331 (353)
T ss_dssp S-SS----------S-E------EEEEEEE----CTSSEEEEEESSGG--TTSBEEEEEETTETTEEEESSTTSST-TE-
T ss_pred ccCc----------eee------cccceEc----CCCCEEEEEecCCC--CCceEEEEEEeCCCCCeEeccCCCCC-ce-
Confidence 3222 111 0122222 34668999985432 335789999999 8888888655433 21
Q ss_pred EEEEeecCCCccccccCCCEEEEEeecCCCCc
Q 012630 339 TAVALNLDQSVGDVNLNQLKILTSKESKTEIT 370 (459)
Q Consensus 339 ~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ 370 (459)
... ++.+++.++.+.+++..|+
T Consensus 332 --~~~--------~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 332 --SAS--------FSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp --EEE--------E-TTSSEEEEEEESSSSCE
T ss_pred --EEE--------ECCCCCEEEEEEcCCCCCC
Confidence 111 4556688999999998885
No 27
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.82 E-value=5.2e-08 Score=104.11 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=109.9
Q ss_pred CCCCCeEeecCCCcccccccccccCCChhhHHHHHHHhhcceEEEcCCCceeecCCCceeeecccCCCCCeEEEEEeccC
Q 012630 36 VPFGPKIQSNEQQNVIQNRYTEGLLKDEFDEYLFEHYTTTQLVLATLDGTVKEFGPPAIYTAVEPSPDQKYILITSIDRP 115 (459)
Q Consensus 36 ~~~~p~i~~~~~~~~~~~rt~~d~l~~~~D~~~f~~~~~sqL~~v~~~G~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p 115 (459)
....|.|+++. ..++..++-.|. ++. ..++||+++.+|+.++++.......++|||||+.|+|++...+
T Consensus 351 ~vsspaiSpdG-~~vA~v~~~~~~-~~d---------~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 351 NITSAALSRSG-RQVAAVVTLGRG-APD---------PASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred CcccceECCCC-CEEEEEEeecCC-CCC---------cceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcc
Confidence 35678899887 787787776652 111 4689999999888899988666789999999999999975433
Q ss_pred cccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCe
Q 012630 116 YSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDI 195 (459)
Q Consensus 116 ~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~ 195 (459)
-.+.. ......+++++++++++.++ .. ..++.++.|||||. +|+++. +| +
T Consensus 420 ~~~v~-~~~~~gql~~~~vd~ge~~~--~~-------------~g~Issl~wSpDG~-RiA~i~---~g----------~ 469 (591)
T PRK13616 420 VVRVI-RDPATGQLARTPVDASAVAS--RV-------------PGPISELQLSRDGV-RAAMII---GG----------K 469 (591)
T ss_pred eEEEe-ccCCCceEEEEeccCchhhh--cc-------------CCCcCeEEECCCCC-EEEEEE---CC----------E
Confidence 22221 11123577777777766553 21 22466899999999 888775 11 4
Q ss_pred EEe---ccCCCCCCCC-----ceEeccccce-eccceeCCCCcEEEEEeecCCccEEEEEEcCCCC
Q 012630 196 IYT---QPAEPVEGEE-----PEILHKLDLR-FRGVSWCDDSLALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 196 l~~---~~~~pf~g~~-----~~~L~~~~~~-~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
||+ +.. .+|+ ++.|...... ...+.|..|+..++... .....+|.+++++.
T Consensus 470 v~Va~Vvr~---~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~---~~~~~v~~v~vDG~ 529 (591)
T PRK13616 470 VYLAVVEQT---EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS---DPEHPVWYVNLDGS 529 (591)
T ss_pred EEEEEEEeC---CCCceeecccEEeecccCCccccceEecCCEEEEEec---CCCCceEEEecCCc
Confidence 554 333 3344 2224432222 36689998874444332 23456899998753
No 28
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.71 E-value=2.2e-05 Score=82.27 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=156.0
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceE
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTL 175 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l 175 (459)
..++.|||+++||+..... .+-.-.+-+.|+..++.. |....+ -..++.|.+|++ ++
T Consensus 132 g~~~~s~D~~~la~s~D~~--------G~e~y~lr~kdL~tg~~~-----------~d~i~~---~~~~~~Wa~d~~-~l 188 (682)
T COG1770 132 GAASISPDHNLLAYSVDVL--------GDEQYTLRFKDLATGEEL-----------PDEITN---TSGSFAWAADGK-TL 188 (682)
T ss_pred eeeeeCCCCceEEEEEecc--------cccEEEEEEEeccccccc-----------chhhcc---cccceEEecCCC-eE
Confidence 4889999999999986321 001122334455432211 111111 123789999999 99
Q ss_pred EEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-cccee-ccceeCCCC-cEEEEEeecCCccEEEEEEcCCCC
Q 012630 176 YWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRF-RGVSWCDDS-LALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 176 ~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~-~~~~Ws~D~-~al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
+|+...+.+-+ +.|+.-...- ..+..+.+.. .+.++ -.+.=+... ..++... +.....++.++.+.+
T Consensus 189 fYt~~d~~~rp-------~kv~~h~~gt-~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~--~~~tsE~~ll~a~~p 258 (682)
T COG1770 189 FYTRLDENHRP-------DKVWRHRLGT-PGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLG--SHITSEVRLLDADDP 258 (682)
T ss_pred EEEEEcCCCCc-------ceEEEEecCC-CCCcceEEEEcCCCcEEEEeeeccCCceEEEEcC--CCcceeEEEEecCCC
Confidence 99986554422 3444333300 1124444554 22222 122223333 3334332 344567888888777
Q ss_pred CCCceEEeecCCCCccC-CCCC--CCeeeCCCCCEE-EEEeee-cc----------CC----------CcEEEEEcCCCC
Q 012630 253 DTAPLILFDRSSEDVYS-DPGL--PMMRKSSTGTRV-IAKIKK-EN----------DQ----------GTYILLNGRGAT 307 (459)
Q Consensus 253 ~~~~~~l~d~~~~d~y~-~pg~--~~~~~~~dg~~v-~~~~~~-~~----------~~----------~~~ly~~~~g~s 307 (459)
+..++++.-|.-..-|. +.++ +.-..+.+|+.. |+...- .+ .+ .+.|.+.-
T Consensus 259 ~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~e---- 334 (682)
T COG1770 259 EAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLE---- 334 (682)
T ss_pred CCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEe----
Confidence 77788886443211111 1111 111224444321 111100 00 00 00111111
Q ss_pred CCCCcceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeeccc
Q 012630 308 PEGDVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITD 387 (459)
Q Consensus 308 ~~gd~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~ 387 (459)
..+..|.+...+..+|+...|--.+ . .|.. -+... -..+..++.+..+|.+.|..+|-+|+.+++.+.|..
T Consensus 335 R~~glp~v~v~~~~~~~~~~i~f~~-~-ay~~---~l~~~----~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkq 405 (682)
T COG1770 335 RQEGLPRVVVRDRKTGEERGIAFDD-E-AYSA---GLSGN----PEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQ 405 (682)
T ss_pred cccCCceEEEEecCCCceeeEEecc-h-hhhc---cccCC----CCCCCccEEEEeecccccceeEEeeccCCcEEEEEe
Confidence 1233444555555544443321111 1 1100 00000 112456899999999999999999999888877665
Q ss_pred ccCCCCC-Cc--CCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCC
Q 012630 388 FPHPYPL-LS--TLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPG 440 (459)
Q Consensus 388 ~~~~~~~-~~--~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~ 440 (459)
- +.+. .. .=..|.|+.++.||++|.=.|+.=.+++ ++++-|++||.|..
T Consensus 406 q--eV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~--~~g~~p~lLygYGa 457 (682)
T COG1770 406 Q--EVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTK--LDGSAPLLLYGYGA 457 (682)
T ss_pred c--cCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccC--CCCCCcEEEEEecc
Confidence 2 3343 32 2468899999999999999999988865 45589999999864
No 29
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.70 E-value=1.1e-06 Score=81.24 Aligned_cols=136 Identities=17% Similarity=0.172 Sum_probs=87.1
Q ss_pred HHhhcceEEEcC-CCcee--ecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccc
Q 012630 71 HYTTTQLVLATL-DGTVK--EFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPL 147 (459)
Q Consensus 71 ~~~~sqL~~v~~-~G~~~--~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~ 147 (459)
||...+||.++. +.... .+...+.+.+++|||+|++++++.- ..+..+.+||+.+..+..+-..
T Consensus 35 ~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-----------~~~~~v~lyd~~~~~i~~~~~~-- 101 (194)
T PF08662_consen 35 YYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG-----------SMPAKVTLYDVKGKKIFSFGTQ-- 101 (194)
T ss_pred EEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc-----------cCCcccEEEcCcccEeEeecCC--
Confidence 456678999987 55444 3444555799999999999988852 2356789999987666655332
Q ss_pred cccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc-cceeccceeCC
Q 012630 148 VENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL-DLRFRGVSWCD 226 (459)
Q Consensus 148 ~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~-~~~~~~~~Ws~ 226 (459)
....+.|||+|+ .|+..... .....|..++. . +...+... ......+.|+|
T Consensus 102 -------------~~n~i~wsP~G~-~l~~~g~~---------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsP 153 (194)
T PF08662_consen 102 -------------PRNTISWSPDGR-FLVLAGFG---------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWSP 153 (194)
T ss_pred -------------CceEEEECCCCC-EEEEEEcc---------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEcC
Confidence 223679999999 66654321 11245777777 3 33444332 22356789999
Q ss_pred CCcEEEEEe--ecC--CccEEEEEE
Q 012630 227 DSLALVQET--WFK--TTQTRTWLI 247 (459)
Q Consensus 227 D~~al~~~~--~~~--~~~~~ly~v 247 (459)
||..|+... ++. +...+||.+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe
Confidence 997777543 111 456677776
No 30
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.67 E-value=3.2e-06 Score=84.35 Aligned_cols=224 Identities=17% Similarity=0.200 Sum_probs=114.7
Q ss_pred ccccCCChhhHHHHH--HHhhcceEEEcC-CCceeecCCCc--eeeecccCCCCCeEEEEEeccCcccccccCCCCcceE
Q 012630 56 TEGLLKDEFDEYLFE--HYTTTQLVLATL-DGTVKEFGPPA--IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQ 130 (459)
Q Consensus 56 ~~d~l~~~~D~~~f~--~~~~sqL~~v~~-~G~~~~l~~~~--~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~ 130 (459)
|++-....++..+|. +....|||++|| +|+++|||... ...+..+||+.+.|.|+... +.+.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------------~~l~ 105 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------------RSLR 105 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------------TEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------------CeEE
Confidence 344444443333331 346789999999 99999999843 33478999999999888532 5688
Q ss_pred EEecCCceeeeeecccccccccccccccccceeeeEEecCCCc-eEEEEEeccCCcc--c--------cccCCCCeEEec
Q 012630 131 VWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS-TLYWVETQDGGAA--K--------VEVSPRDIIYTQ 199 (459)
Q Consensus 131 v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~-~l~~~~~~d~g~~--~--------~~~~~~~~l~~~ 199 (459)
.+|+++.+.+.|...|-. -...-.|+.+... .++-++....... . ........|+.+
T Consensus 106 ~vdL~T~e~~~vy~~p~~------------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 106 RVDLDTLEERVVYEVPDD------------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEETTT--EEEEEE--TT------------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEECCcCcEEEEEECCcc------------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 899999999999887531 1113588744333 4555554322110 0 011234689999
Q ss_pred cCCCCCCCCceEeccccceeccceeCC-CC--cEEEEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCe
Q 012630 200 PAEPVEGEEPEILHKLDLRFRGVSWCD-DS--LALVQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMM 276 (459)
Q Consensus 200 ~~~pf~g~~~~~L~~~~~~~~~~~Ws~-D~--~al~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~ 276 (459)
+. .+|+.+.+.....-.+-+..|| |. ++|-.+..++.-..++|.++.++.. .+.+..+. ++..+.
T Consensus 174 dl---~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~-------~~e~~g 241 (386)
T PF14583_consen 174 DL---KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRM-------EGESVG 241 (386)
T ss_dssp ET---TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----------TTEEEE
T ss_pred EC---CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc--ceeeecCC-------CCcccc
Confidence 98 6679999987666667788887 43 3333444445334579999987543 34443221 121221
Q ss_pred --eeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECCCCceEEEeecC
Q 012630 277 --RKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNINTGSKERIWESD 332 (459)
Q Consensus 277 --~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~~~ 332 (459)
.+.+||..|.+.. ++ +.+...+|+.+|+.|++.+.+...+
T Consensus 242 HEfw~~DG~~i~y~~----------~~------~~~~~~~i~~~d~~t~~~~~~~~~p 283 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDS----------YT------PGGQDFWIAGYDPDTGERRRLMEMP 283 (386)
T ss_dssp EEEE-TTSS-EEEEE----------EE------TTT--EEEEEE-TTT--EEEEEEE-
T ss_pred cccccCCCCEEEEEe----------ec------CCCCceEEEeeCCCCCCceEEEeCC
Confidence 4688888665421 22 2333457889999998887665544
No 31
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.62 E-value=3e-06 Score=84.60 Aligned_cols=235 Identities=16% Similarity=0.214 Sum_probs=136.6
Q ss_pred HHhhcceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccc
Q 012630 71 HYTTTQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLV 148 (459)
Q Consensus 71 ~~~~sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~ 148 (459)
|-+-..||..++ +|+.++||+. +.+..+.+||||+.|||+..-.--+ .-..++|+++.++++.++||=.-
T Consensus 55 Ft~~DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss------~~taDly~v~~e~Ge~kRiTyfG-- 126 (668)
T COG4946 55 FTCCDDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSS------LQTADLYVVPSEDGEAKRITYFG-- 126 (668)
T ss_pred EEechHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCC------CccccEEEEeCCCCcEEEEEEec--
Confidence 345667888888 9999999985 6668999999999999965322111 22578999999999999998741
Q ss_pred ccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCC
Q 012630 149 ENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDS 228 (459)
Q Consensus 149 ~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~ 228 (459)
+.--|-.-|+|||. .|+.+.+- . +...-..+|.+.. +|.+-..|.-++ ...+.. .||
T Consensus 127 ----------r~fT~VaG~~~dg~-iiV~TD~~---t---PF~q~~~lYkv~~---dg~~~e~LnlGp--athiv~-~dg 183 (668)
T COG4946 127 ----------RRFTRVAGWIPDGE-IIVSTDFH---T---PFSQWTELYKVNV---DGIKTEPLNLGP--ATHIVI-KDG 183 (668)
T ss_pred ----------cccceeeccCCCCC-EEEEeccC---C---CcccceeeeEEcc---CCceeeeccCCc--eeeEEE-eCC
Confidence 12234458999999 77766432 1 1121247888877 764444443222 122222 355
Q ss_pred cEEEEEe------e--cC-CccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEE
Q 012630 229 LALVQET------W--FK-TTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYI 299 (459)
Q Consensus 229 ~al~~~~------~--~~-~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~l 299 (459)
+.++... | ++ .+...+|.=. .++.. -+.+.|.+..- ..| +++ +.++
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWis~-d~g~t-FeK~vdl~~~v-----S~P----------mIV--------~~Rv 238 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKT-FEKFVDLDGNV-----SSP----------MIV--------GERV 238 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEEEe-cCCcc-eeeeeecCCCc-----CCc----------eEE--------cceE
Confidence 5555432 2 11 3456677532 22211 12222222111 011 222 4478
Q ss_pred EEEcCCCCCCCCcceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCC
Q 012630 300 LLNGRGATPEGDVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPH 379 (459)
Q Consensus 300 y~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~ 379 (459)
||++. .+| .-.|+.+||++...++...- .++|-+. ..-||.+|+|.. -+++|+++.++
T Consensus 239 YFlsD---~eG-~GnlYSvdldGkDlrrHTnF--tdYY~R~-----------~nsDGkrIvFq~-----~GdIylydP~t 296 (668)
T COG4946 239 YFLSD---HEG-VGNLYSVDLDGKDLRRHTNF--TDYYPRN-----------ANSDGKRIVFQN-----AGDIYLYDPET 296 (668)
T ss_pred EEEec---ccC-ccceEEeccCCchhhhcCCc--hhccccc-----------cCCCCcEEEEec-----CCcEEEeCCCc
Confidence 99872 121 12488999997776655322 2244332 122568898854 68899999765
Q ss_pred ccee
Q 012630 380 KKCR 383 (459)
Q Consensus 380 g~~~ 383 (459)
...+
T Consensus 297 d~le 300 (668)
T COG4946 297 DSLE 300 (668)
T ss_pred Ccce
Confidence 4443
No 32
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.59 E-value=4.8e-05 Score=78.49 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=77.2
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceE
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTL 175 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l 175 (459)
...++||||++|||..... ..-...++++|+++++.. .+ ..+ . .....+.|++|+. .+
T Consensus 127 ~~~~~Spdg~~la~~~s~~--------G~e~~~l~v~Dl~tg~~l--~d-----~i~----~--~~~~~~~W~~d~~-~~ 184 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG--------GSEWYTLRVFDLETGKFL--PD-----GIE----N--PKFSSVSWSDDGK-GF 184 (414)
T ss_dssp EEEEETTTSSEEEEEEEET--------TSSEEEEEEEETTTTEEE--EE-----EEE----E--EESEEEEECTTSS-EE
T ss_pred eeeeECCCCCEEEEEecCC--------CCceEEEEEEECCCCcCc--CC-----ccc----c--cccceEEEeCCCC-EE
Confidence 4789999999999996432 111356889999766332 11 000 0 1122389999999 88
Q ss_pred EEEEeccCCccccccCCCCeEEeccCCCCCCC--CceEeccccc-e--eccceeCCCCcE-EEEEeecCCccEEEEEEcC
Q 012630 176 YWVETQDGGAAKVEVSPRDIIYTQPAEPVEGE--EPEILHKLDL-R--FRGVSWCDDSLA-LVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 176 ~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~--~~~~L~~~~~-~--~~~~~Ws~D~~a-l~~~~~~~~~~~~ly~v~~ 249 (459)
+|+...+..... .......||.... ... +.+.|+.... . +-.+.++.|+.. ++.... ......+|.++.
T Consensus 185 ~y~~~~~~~~~~-~~~~~~~v~~~~~---gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~-~~~~s~v~~~d~ 259 (414)
T PF02897_consen 185 FYTRFDEDQRTS-DSGYPRQVYRHKL---GTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS-GTSESEVYLLDL 259 (414)
T ss_dssp EEEECSTTTSS--CCGCCEEEEEEET---TS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES-SSSEEEEEEEEC
T ss_pred EEEEeCcccccc-cCCCCcEEEEEEC---CCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc-cccCCeEEEEec
Confidence 888754432200 1111246776665 211 2235554322 2 345677888744 444432 222589999998
Q ss_pred CCC---CCCceEEeec
Q 012630 250 GSK---DTAPLILFDR 262 (459)
Q Consensus 250 ~~~---~~~~~~l~d~ 262 (459)
.++ ...++++..+
T Consensus 260 ~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPR 275 (414)
T ss_dssp CCTTTSS-SEEEEEES
T ss_pred cccCCCcCCcEEEeCC
Confidence 753 3456766543
No 33
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.42 E-value=1.6e-05 Score=79.48 Aligned_cols=249 Identities=19% Similarity=0.270 Sum_probs=141.5
Q ss_pred ecccCCC--CCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCce
Q 012630 97 AVEPSPD--QKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPST 174 (459)
Q Consensus 97 ~~~~SPD--G~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~ 174 (459)
..=.-|| |..|+|++- .++|.+++..++.+.||..-.--+ ...++|||+ .
T Consensus 41 n~~l~PDI~GD~IiFt~~--------------DdlWe~slk~g~~~ritS~lGVvn-------------n~kf~pdGr-k 92 (668)
T COG4946 41 NYYLNPDIYGDRIIFTCC--------------DDLWEYSLKDGKPLRITSGLGVVN-------------NPKFSPDGR-K 92 (668)
T ss_pred hhhcCCcccCcEEEEEec--------------hHHHHhhhccCCeeEEecccceec-------------cccCCCCCc-E
Confidence 4456677 999999974 456777887677777776322122 448999999 8
Q ss_pred EEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccc-eeCCCCcEEEEEeecC--CccEEEEEEcCCC
Q 012630 175 LYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGV-SWCDDSLALVQETWFK--TTQTRTWLISPGS 251 (459)
Q Consensus 175 l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~-~Ws~D~~al~~~~~~~--~~~~~ly~v~~~~ 251 (459)
++|.+..-+.. .....||+++. ++||++.+|-...++..+ .|.+||..|++..... ..++.+|.++.++
T Consensus 93 vaf~rv~~~ss-----~~taDly~v~~---e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg 164 (668)
T COG4946 93 VAFSRVMLGSS-----LQTADLYVVPS---EDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDG 164 (668)
T ss_pred EEEEEEEecCC-----CccccEEEEeC---CCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCC
Confidence 88865432211 11357999988 778999998765566664 7999998888765433 5789999999875
Q ss_pred CCCCceEEeecCCCCccCCCCCCCe-eeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECCCCceEEEee
Q 012630 252 KDTAPLILFDRSSEDVYSDPGLPMM-RKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNINTGSKERIWE 330 (459)
Q Consensus 252 ~~~~~~~l~d~~~~d~y~~pg~~~~-~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~ 330 (459)
...++-.| .|.+ ..-.||. ..+|.+ .-|.|+--.+ ++|..-.||-
T Consensus 165 ~~~e~Lnl-------------Gpathiv~~dg~----------------ivigRn---tydLP~WK~Y--kGGtrGklWi 210 (668)
T COG4946 165 IKTEPLNL-------------GPATHIVIKDGI----------------IVIGRN---TYDLPHWKGY--KGGTRGKLWI 210 (668)
T ss_pred ceeeeccC-------------CceeeEEEeCCE----------------EEEccC---cccCcccccc--cCCccceEEE
Confidence 42221111 1111 1122232 222210 1112221111 2333444554
Q ss_pred cCcc-cceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeecccccCCCCCCcCCceEEEEEECCC
Q 012630 331 SDKE-KYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITDFPHPYPLLSTLQKELIKYQRKD 409 (459)
Q Consensus 331 ~~~~-~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~~~~~~~~~~~~~E~i~yks~D 409 (459)
+... ..+|.++.+ +.+..-++- -++++.| .+.-.--+|+|..++.+..+|+=|+|.+=++.-....-+.|.|...
T Consensus 211 s~d~g~tFeK~vdl-~~~vS~PmI-V~~RvYF-lsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~- 286 (668)
T COG4946 211 SSDGGKTFEKFVDL-DGNVSSPMI-VGERVYF-LSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNA- 286 (668)
T ss_pred EecCCcceeeeeec-CCCcCCceE-EcceEEE-EecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecC-
Confidence 3211 133433211 111000001 1245554 3567778999999998888999999977677433344455556543
Q ss_pred CcEEEEEEEccCC
Q 012630 410 GVQLTAKLYLPTG 422 (459)
Q Consensus 410 G~~l~g~L~lP~~ 422 (459)
| .=|||-|..
T Consensus 287 G---dIylydP~t 296 (668)
T COG4946 287 G---DIYLYDPET 296 (668)
T ss_pred C---cEEEeCCCc
Confidence 1 237777754
No 34
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.2e-05 Score=79.51 Aligned_cols=129 Identities=18% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCcEEEEEcCCCCCCCCcceEEEEECC-CCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceE
Q 012630 295 QGTYILLNGRGATPEGDVPFLDLFNIN-TGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYW 373 (459)
Q Consensus 295 ~~~~ly~~~~g~s~~gd~~~l~~~~l~-tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely 373 (459)
..+-+||.|+..+|-. .+|+.+.+. .|+..++.... |.--.. ++. +-+.++....+...|+..-
T Consensus 514 ~~~LVYf~gt~d~PlE--~hLyvvsye~~g~~~rlt~~g----~sh~~~-l~~--------~~d~fv~~~~sv~sP~cv~ 578 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLE--HHLYVVSYENPGEIARLTEPG----YSHSCE-LDQ--------QCDHFVSYYSSVGSPPCVS 578 (867)
T ss_pred cceEEEEEccCCCCce--eeEEEEEEecCCceeeccCCC----cccchh-hhh--------hhhhHhhhhhcCCCCceEE
Confidence 3557899985444433 467777776 67777774432 211110 122 1234666777888999977
Q ss_pred EEECCCcc----eeeccc---ccC-CCCCCcCCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCC
Q 012630 374 IQSWPHKK----CRQITD---FPH-PYPLLSTLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPG 440 (459)
Q Consensus 374 ~~~~~~g~----~~~LT~---~~~-~~~~~~~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~ 440 (459)
++.+..++ .++... .-. ..++-+...+|.|.|.+.-|..+.|-+|||.+|+++| |||+++++|..
T Consensus 579 ~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgk--kYptvl~VYGG 651 (867)
T KOG2281|consen 579 LYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGK--KYPTVLNVYGG 651 (867)
T ss_pred EEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCC--CCceEEEEcCC
Confidence 77664332 122111 001 1223345778999999999999999999999999999 99999999975
No 35
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.28 E-value=5e-05 Score=75.91 Aligned_cols=319 Identities=11% Similarity=0.090 Sum_probs=142.0
Q ss_pred eeEe-cCCcEEEEEeeCCCCCCCCCCCCCCCCeEeecCCCcccccccccccCCChhhHHHHHHHhhcceEEEcC-CCcee
Q 012630 10 FVWV-NSSVLLVYTIPLSRGDSPKKSLVPFGPKIQSNEQQNVIQNRYTEGLLKDEFDEYLFEHYTTTQLVLATL-DGTVK 87 (459)
Q Consensus 10 ~~w~-d~~~l~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~rt~~d~l~~~~D~~~f~~~~~sqL~~v~~-~G~~~ 87 (459)
=.|. ||+.|+|..--.++... =.-.|.++-+.|.+. +.- .-++--.++.+ |.++|.+-...+|+.|++ +++.+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nl-y~lDL~t~~i~QLTd-g~g--~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNL-YLLDLATGEITQLTD-GPG--DNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EE-EEEETTT-EEEE----SS---B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EE
T ss_pred CCcCCCCCEEEEEeccCCCcce-EEEEcccCEEEECcc-CCC--CCccceEEecC-CCeEEEEECCCeEEEEECCcCcEE
Confidence 4699 99999996421111000 001245566677776 321 11222233322 333321112348999999 88887
Q ss_pred ecCC-Ccee---eecccCCCCCeEEEEEecc-Cccccccc--------CCCCcceEEEecCCceeeeeeccccccccccc
Q 012630 88 EFGP-PAIY---TAVEPSPDQKYILITSIDR-PYSFTVSY--------TKFPQKVQVWTADGKFVRQLCELPLVENIPIA 154 (459)
Q Consensus 88 ~l~~-~~~~---~~~~~SPDG~~l~~~~~~~-p~s~~v~~--------~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~ 154 (459)
.+-. +... .......|++.++.....+ .+...-.+ .+-...|..+|+.+++.+.|-+...
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~------- 188 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD------- 188 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-------
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-------
Confidence 6653 3322 2444467899887776443 32221111 2235888999999888877765311
Q ss_pred ccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc-cce-eccceeCCCCcEEE
Q 012630 155 YNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL-DLR-FRGVSWCDDSLALV 232 (459)
Q Consensus 155 ~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~-~~~-~~~~~Ws~D~~al~ 232 (459)
=..-+..||.-+.+|.|..- |... ....+||.++. +|+..+.+... ..- .+---|++||..|.
T Consensus 189 ------wlgH~~fsP~dp~li~fCHE---Gpw~---~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 189 ------WLGHVQFSPTDPTLIMFCHE---GPWD---LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp -------EEEEEEETTEEEEEEEEE----S-TT---TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred ------cccCcccCCCCCCEEEEecc---CCcc---eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEE
Confidence 11256888888888888642 2110 11238999999 88777777642 222 23357999998888
Q ss_pred EEeecC-CccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEc-CCCCCCC
Q 012630 233 QETWFK-TTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNG-RGATPEG 310 (459)
Q Consensus 233 ~~~~~~-~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~-~g~s~~g 310 (459)
+..... ....-|+.+++.+++. +.+....... =...++||+.++.-..+ ..+.... .|... .
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~--~~~~~~p~~~--------H~~ss~Dg~L~vGDG~d-----~p~~v~~~~~~~~-~ 317 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGER--RRLMEMPWCS--------HFMSSPDGKLFVGDGGD-----APVDVADAGGYKI-E 317 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--E--EEEEEE-SEE--------EEEE-TTSSEEEEEE----------------------
T ss_pred EEeecCCCCceEEEeeCCCCCCc--eEEEeCCcee--------eeEEcCCCCEEEecCCC-----CCcccccccccee-c
Confidence 766422 3455688889987643 4443221100 01247777755432211 0111111 01111 2
Q ss_pred CcceEEEEECCCCceEEEeecCcccceEEEEEeecCCC-----ccccccCCCEEEEEeecCCCCcceEEEECC
Q 012630 311 DVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQS-----VGDVNLNQLKILTSKESKTEITQYWIQSWP 378 (459)
Q Consensus 311 d~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~-----~~~~~~d~~~i~~~~~s~~~P~ely~~~~~ 378 (459)
+.|+|+.+++.++....|.+.... . ..++.+. --.+++|+..|||+ ++..-++.+|+.++.
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~s----w--~v~~~~~q~~hPhp~FSPDgk~VlF~-Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDTS----W--KVLDGDRQVTHPHPSFSPDGKWVLFR-SDMEGPPAVYLVEIP 383 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------------BTTBSSTT----EE-TTSSEEEEE-E-TTSS-EEEEEE--
T ss_pred CCcEEEEeccccCceeeeeeccCc----c--eeecCCCccCCCCCccCCCCCEEEEE-CCCCCCccEEEEeCc
Confidence 357888899887776666544311 0 0111110 12367787777775 577888999998853
No 36
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0022 Score=70.98 Aligned_cols=56 Identities=32% Similarity=0.364 Sum_probs=43.4
Q ss_pred CceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCCccCCcccccCcCCCCCC
Q 012630 398 LQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPGEFRSKDAAGQVRGSPNE 457 (459)
Q Consensus 398 ~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~e~~~~~~a~q~~~s~~~ 457 (459)
...|..+.+- ||..++.++++|++|++++ |||+||++|+..- |..++++.+-+.+.
T Consensus 496 p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~-sq~v~~~~~~~~~~ 551 (755)
T KOG2100|consen 496 PIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPG-SQSVTSKFSVDWNE 551 (755)
T ss_pred CcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCC-cceeeeeEEecHHH
Confidence 3444444444 9999999999999999988 9999999999987 66666666655443
No 37
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.01 E-value=4.7e-05 Score=81.67 Aligned_cols=129 Identities=13% Similarity=0.067 Sum_probs=78.2
Q ss_pred hcceEEEcCCCceeecCC----CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccc
Q 012630 74 TTQLVLATLDGTVKEFGP----PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVE 149 (459)
Q Consensus 74 ~sqL~~v~~~G~~~~l~~----~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~ 149 (459)
.++|+.++ ++.+.++.. .....++++||||++++|+..... ........+|+++..| ..++++.... .
T Consensus 328 ~G~l~~~~-~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~-----~~~d~~s~Lwv~~~gg-~~~~lt~g~~-~ 399 (591)
T PRK13616 328 DGSLVSVD-GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGR-----GAPDPASSLWVGPLGG-VAVQVLEGHS-L 399 (591)
T ss_pred CCeEEEec-CCCeeeCCCccccccCcccceECCCCCEEEEEEeecC-----CCCCcceEEEEEeCCC-cceeeecCCC-C
Confidence 45566555 444444432 234579999999999999974321 0011236788888644 4466655321 2
Q ss_pred cccccccccccceeeeEEecCCCceEEEEEeccCCccccc---cCCCCeEEeccCCCCCCCCceEeccccceeccceeCC
Q 012630 150 NIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVE---VSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCD 226 (459)
Q Consensus 150 ~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~---~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~ 226 (459)
. .++|+|||+ .|+++.. + ..... .....++|+++. ++++.+. ..+..+..+.||+
T Consensus 400 t-------------~PsWspDG~-~lw~v~d--g-~~~~~v~~~~~~gql~~~~v---d~ge~~~--~~~g~Issl~wSp 457 (591)
T PRK13616 400 T-------------RPSWSLDAD-AVWVVVD--G-NTVVRVIRDPATGQLARTPV---DASAVAS--RVPGPISELQLSR 457 (591)
T ss_pred C-------------CceECCCCC-ceEEEec--C-cceEEEeccCCCceEEEEec---cCchhhh--ccCCCcCeEEECC
Confidence 2 459999998 6777642 1 11000 012357888877 6667765 4455688899999
Q ss_pred CCcEEE
Q 012630 227 DSLALV 232 (459)
Q Consensus 227 D~~al~ 232 (459)
||..++
T Consensus 458 DG~RiA 463 (591)
T PRK13616 458 DGVRAA 463 (591)
T ss_pred CCCEEE
Confidence 984333
No 38
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.84 E-value=0.026 Score=54.38 Aligned_cols=134 Identities=12% Similarity=0.025 Sum_probs=72.7
Q ss_pred cceEEEcC-CCceee-cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce-eeeeecccccccc
Q 012630 75 TQLVLATL-DGTVKE-FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF-VRQLCELPLVENI 151 (459)
Q Consensus 75 sqL~~v~~-~G~~~~-l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~-~~~lt~~p~~~~~ 151 (459)
..|+++++ +|+... +........+.|+|||++|++... ....+.+||+.... +..+. .
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------------~~~~l~~~d~~~~~~~~~~~---~---- 113 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE------------DDNLVTVIDIETRKVLAEIP---V---- 113 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC------------CCCeEEEEECCCCeEEeEee---C----
Confidence 46888888 676543 433333457889999998866531 13568999987543 22221 1
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEE
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al 231 (459)
...+..+.|+|||. .++.... + ...++.++. ..++.............+.|++|+..|
T Consensus 114 -------~~~~~~~~~~~dg~-~l~~~~~-~----------~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 114 -------GVEPEGMAVSPDGK-IVVNTSE-T----------TNMAHFIDT---KTYEIVDNVLVDQRPRFAEFTADGKEL 171 (300)
T ss_pred -------CCCcceEEECCCCC-EEEEEec-C----------CCeEEEEeC---CCCeEEEEEEcCCCccEEEECCCCCEE
Confidence 11235789999998 5554321 1 112334444 222322211122233457899998655
Q ss_pred EEEeecCCccEEEEEEcCCCC
Q 012630 232 VQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v~~~~~ 252 (459)
+..... . ..++.++++++
T Consensus 172 ~~~~~~-~--~~v~i~d~~~~ 189 (300)
T TIGR03866 172 WVSSEI-G--GTVSVIDVATR 189 (300)
T ss_pred EEEcCC-C--CEEEEEEcCcc
Confidence 433211 2 24667777654
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.79 E-value=0.0084 Score=57.80 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=68.9
Q ss_pred hcceEEEcC-CCceee-cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCcee-eeeeccccccc
Q 012630 74 TTQLVLATL-DGTVKE-FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFV-RQLCELPLVEN 150 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~-l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~-~~lt~~p~~~~ 150 (459)
...|.++|+ +|+... +........+.|||||++|+++.. ....+.+||..+++. +.+..
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~------------~~~~v~~~d~~~~~~~~~~~~------ 71 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS------------DSDTIQVIDLATGEVIGTLPS------ 71 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC------------CCCeEEEEECCCCcEEEeccC------
Confidence 356888888 676543 332333457999999998766642 135688999875543 22211
Q ss_pred ccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcE
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLA 230 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~a 230 (459)
...+..+.|+||++ .++..... ...|++++. ..++.............+.|++|+..
T Consensus 72 --------~~~~~~~~~~~~g~-~l~~~~~~-----------~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~dg~~ 128 (300)
T TIGR03866 72 --------GPDPELFALHPNGK-ILYIANED-----------DNLVTVIDI---ETRKVLAEIPVGVEPEGMAVSPDGKI 128 (300)
T ss_pred --------CCCccEEEECCCCC-EEEEEcCC-----------CCeEEEEEC---CCCeEEeEeeCCCCcceEEECCCCCE
Confidence 11245689999998 55433211 125777776 32122111112223456899999866
Q ss_pred EEEEe
Q 012630 231 LVQET 235 (459)
Q Consensus 231 l~~~~ 235 (459)
++...
T Consensus 129 l~~~~ 133 (300)
T TIGR03866 129 VVNTS 133 (300)
T ss_pred EEEEe
Confidence 65443
No 40
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.60 E-value=0.069 Score=53.68 Aligned_cols=94 Identities=19% Similarity=0.071 Sum_probs=55.1
Q ss_pred hhcceEEEcC-CCceee-cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeecccccc
Q 012630 73 TTTQLVLATL-DGTVKE-FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVE 149 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~~-l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~ 149 (459)
..+++.++|. ++++.- +..+..-.. .+||||++|++...- |+. .....-...+.|+|.+ ++.++.|.-.+
T Consensus 25 ~~~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~--~~R-~~~G~~~d~V~v~D~~t~~~~~~i~~p~--- 97 (352)
T TIGR02658 25 ATTQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTV--YSR-IARGKRTDYVEVIDPQTHLPIADIELPE--- 97 (352)
T ss_pred cCceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEecc--ccc-cccCCCCCEEEEEECccCcEEeEEccCC---
Confidence 3489999998 776553 333222233 499999999777531 111 1222224678999976 44455553211
Q ss_pred cccccccccccceeeeEEecCCCceEEE
Q 012630 150 NIPIAYNSVREGMRLISWRADRPSTLYW 177 (459)
Q Consensus 150 ~~P~~~~~~~~~~r~~~WspDg~~~l~~ 177 (459)
.| ...+...+..+..||||+ +|+.
T Consensus 98 -~p--~~~~~~~~~~~~ls~dgk-~l~V 121 (352)
T TIGR02658 98 -GP--RFLVGTYPWMTSLTPDNK-TLLF 121 (352)
T ss_pred -Cc--hhhccCccceEEECCCCC-EEEE
Confidence 11 112345666899999999 5553
No 41
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.60 E-value=0.011 Score=59.61 Aligned_cols=147 Identities=15% Similarity=0.221 Sum_probs=76.0
Q ss_pred HHhhcceEEEcC--CCceeecC---------------CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEe
Q 012630 71 HYTTTQLVLATL--DGTVKEFG---------------PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWT 133 (459)
Q Consensus 71 ~~~~sqL~~v~~--~G~~~~l~---------------~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d 133 (459)
.|..+.+.++++ +|...... .....+.+.++|||++|++.-. ....|++++
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl------------G~D~v~~~~ 172 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL------------GADRVYVYD 172 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET------------TTTEEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec------------CCCEEEEEE
Confidence 345677877777 46544321 1122358999999999976632 245678887
Q ss_pred cCCce--eeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceE
Q 012630 134 ADGKF--VRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEI 211 (459)
Q Consensus 134 ~~g~~--~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~ 211 (459)
++... ........+ ....|||.+.|+|||+ .+|.+... ...|.+++..+ ..+..+.
T Consensus 173 ~~~~~~~l~~~~~~~~---------~~G~GPRh~~f~pdg~-~~Yv~~e~-----------s~~v~v~~~~~-~~g~~~~ 230 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKV---------PPGSGPRHLAFSPDGK-YAYVVNEL-----------SNTVSVFDYDP-SDGSLTE 230 (345)
T ss_dssp E-TTS-TEEEEEEEEC---------STTSSEEEEEE-TTSS-EEEEEETT-----------TTEEEEEEEET-TTTEEEE
T ss_pred EeCCCceEEEeecccc---------ccCCCCcEEEEcCCcC-EEEEecCC-----------CCcEEEEeecc-cCCceeE
Confidence 65332 322222111 1246899999999998 66655421 23344443300 1223332
Q ss_pred ecc---c------cceeccceeCCCCcEEEEEeecCCccEEEEEEcCCCC
Q 012630 212 LHK---L------DLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 212 L~~---~------~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
+.. . ....+.+..++||..|+... +.....-+|.++.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG 279 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC
Confidence 211 1 11234577899985444333 2345566777766544
No 42
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.57 E-value=0.0034 Score=57.90 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=75.7
Q ss_pred eecccCCCCCeEEEEEecc-CcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCce
Q 012630 96 TAVEPSPDQKYILITSIDR-PYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPST 174 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~-p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~ 174 (459)
..+.|+|+|++|++.+.++ .-+-...+ ....++.++..+..+..+.- .. ...+..++|+|+|. .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~--~~~~l~~~~~~~~~~~~i~l---~~---------~~~I~~~~WsP~g~-~ 73 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYY--GEFELFYLNEKNIPVESIEL---KK---------EGPIHDVAWSPNGN-E 73 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEE--eeEEEEEEecCCCccceeec---cC---------CCceEEEEECcCCC-E
Confidence 4789999999999998632 21111100 12455556555443333321 11 11367999999999 5
Q ss_pred EEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEEEEcCCCCCC
Q 012630 175 LYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPGSKDT 254 (459)
Q Consensus 175 l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~~~ 254 (459)
++.+.. .. + ..+...+. .+ ++..-.. ......+.|+|+|..|+.... ......+...|..+.
T Consensus 74 favi~g----~~----~--~~v~lyd~---~~-~~i~~~~-~~~~n~i~wsP~G~~l~~~g~-~n~~G~l~~wd~~~~-- 135 (194)
T PF08662_consen 74 FAVIYG----SM----P--AKVTLYDV---KG-KKIFSFG-TQPRNTISWSPDGRFLVLAGF-GNLNGDLEFWDVRKK-- 135 (194)
T ss_pred EEEEEc----cC----C--cccEEEcC---cc-cEeEeec-CCCceEEEECCCCCEEEEEEc-cCCCcEEEEEECCCC--
Confidence 554431 10 1 12333334 33 2222111 223445899999855554331 222233555555432
Q ss_pred CceEEeecCCCCccCCCCCCCeeeCCCCCEEEEE
Q 012630 255 APLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAK 288 (459)
Q Consensus 255 ~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~ 288 (459)
..+... ..+..-...|+|||++++..
T Consensus 136 --~~i~~~------~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 136 --KKISTF------EHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred --EEeecc------ccCcEEEEEEcCCCCEEEEE
Confidence 233111 11111134689999988654
No 43
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.41 E-value=0.073 Score=53.56 Aligned_cols=151 Identities=13% Similarity=0.173 Sum_probs=74.1
Q ss_pred hcceEEEcC--C-CceeecCC----CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeec-
Q 012630 74 TTQLVLATL--D-GTVKEFGP----PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCE- 144 (459)
Q Consensus 74 ~sqL~~v~~--~-G~~~~l~~----~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~- 144 (459)
.+.|....+ + |+.+.+.. +.....+.++|||++|++..- ....+.+++++. +.+.....
T Consensus 61 ~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------------~~g~v~v~~l~~~g~l~~~~~~ 128 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------------GGGSVSVFPLDDDGSLGEVVQT 128 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------------TTTEEEEEEECTTSEEEEEEEE
T ss_pred CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------------cCCeEEEEEccCCcccceeeee
Confidence 345555555 3 66665443 233357899999999977631 135677777642 33322211
Q ss_pred ccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEec----cccceec
Q 012630 145 LPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILH----KLDLRFR 220 (459)
Q Consensus 145 ~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~----~~~~~~~ 220 (459)
.......|..-.....++..+.++|||+ .++.+ |-| .|.|++.+.+. .+++-.... .....-.
T Consensus 129 ~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~---dlG--------~D~v~~~~~~~-~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 129 VRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVP---DLG--------ADRVYVYDIDD-DTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp EESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEE---ETT--------TTEEEEEEE-T-TS-TEEEEEEEECSTTSSEE
T ss_pred cccCCCCCcccccccccceeEEECCCCC-EEEEE---ecC--------CCEEEEEEEeC-CCceEEEeeccccccCCCCc
Confidence 1000111111113356888999999999 55532 333 34555555411 111221111 1111123
Q ss_pred cceeCCCC-cEEEEEeecCCccEEEEEEcCCC
Q 012630 221 GVSWCDDS-LALVQETWFKTTQTRTWLISPGS 251 (459)
Q Consensus 221 ~~~Ws~D~-~al~~~~~~~~~~~~ly~v~~~~ 251 (459)
.+.+++|+ ++++... ......+|.++..+
T Consensus 196 h~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNE--LSNTVSVFDYDPSD 225 (345)
T ss_dssp EEEE-TTSSEEEEEET--TTTEEEEEEEETTT
T ss_pred EEEEcCCcCEEEEecC--CCCcEEEEeecccC
Confidence 47889997 5555433 24556666666443
No 44
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0022 Score=65.81 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=95.2
Q ss_pred hHHHHHHHhhcceEEEcCCCc--eeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeee
Q 012630 65 DEYLFEHYTTTQLVLATLDGT--VKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQL 142 (459)
Q Consensus 65 D~~~f~~~~~sqL~~v~~~G~--~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~l 142 (459)
|..+=.||..+.||+++..|+ ..+|...+-++++.|||+|+-.+++- .-+|..+-|+|+.|..+.-+
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vvy-----------GfMPAkvtifnlr~~~v~df 309 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVY-----------GFMPAKVTIFNLRGKPVFDF 309 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEE-----------ecccceEEEEcCCCCEeEeC
Confidence 333334999999999999664 44777777789999999999988883 22488899999998877654
Q ss_pred ecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccce-ecc
Q 012630 143 CELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLR-FRG 221 (459)
Q Consensus 143 t~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~-~~~ 221 (459)
-+.|. ..+.|+|-|. +|+.+.- + -.+..+-++|+ . ..+.|.+.... ..-
T Consensus 310 ~egpR---------------N~~~fnp~g~-ii~lAGF----G-----NL~G~mEvwDv---~--n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 310 PEGPR---------------NTAFFNPHGN-IILLAGF----G-----NLPGDMEVWDV---P--NRKLIAKFKAANTTV 359 (566)
T ss_pred CCCCc---------------cceEECCCCC-EEEEeec----C-----CCCCceEEEec---c--chhhccccccCCceE
Confidence 33322 2468999999 6665432 1 11345556666 2 34444443322 233
Q ss_pred ceeCCCCcEEEEEee----cCCccEEEEEEc
Q 012630 222 VSWCDDSLALVQETW----FKTTQTRTWLIS 248 (459)
Q Consensus 222 ~~Ws~D~~al~~~~~----~~~~~~~ly~v~ 248 (459)
..|+|||..|+...- +-+...+||.+.
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 689999988876431 125677888883
No 45
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.03 Score=54.96 Aligned_cols=214 Identities=15% Similarity=0.184 Sum_probs=109.7
Q ss_pred cccccCCChhhHHHHH-HHhhcceEEEcC--CCceeecCC----Cce----------eeecccCCCCCeEEEEEeccCcc
Q 012630 55 YTEGLLKDEFDEYLFE-HYTTTQLVLATL--DGTVKEFGP----PAI----------YTAVEPSPDQKYILITSIDRPYS 117 (459)
Q Consensus 55 t~~d~l~~~~D~~~f~-~~~~sqL~~v~~--~G~~~~l~~----~~~----------~~~~~~SPDG~~l~~~~~~~p~s 117 (459)
+|..+..+. +.+|. -|..+.+.+.++ +|.+..... .+. .....+.|||++|++....
T Consensus 92 ~yvsvd~~g--~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG---- 165 (346)
T COG2706 92 CYVSVDEDG--RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG---- 165 (346)
T ss_pred eEEEECCCC--CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----
Confidence 566664433 22222 344566666666 565543311 111 3578899999999887543
Q ss_pred cccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEE
Q 012630 118 FTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIY 197 (459)
Q Consensus 118 ~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~ 197 (459)
..++++++++-+.....+...+ .| ..|+|-+.++|+|+ .+|.+.-.+ ..|.
T Consensus 166 --------~Dri~~y~~~dg~L~~~~~~~v---~~------G~GPRHi~FHpn~k-~aY~v~EL~-----------stV~ 216 (346)
T COG2706 166 --------TDRIFLYDLDDGKLTPADPAEV---KP------GAGPRHIVFHPNGK-YAYLVNELN-----------STVD 216 (346)
T ss_pred --------CceEEEEEcccCcccccccccc---CC------CCCcceEEEcCCCc-EEEEEeccC-----------CEEE
Confidence 4678888876333332222221 12 46899999999998 555443221 2333
Q ss_pred eccCCCCCCCCceEec---cccce------eccceeCCCCcEEEEEeecCCccEEEEEEcCCCCCCCceEEeecCCCCcc
Q 012630 198 TQPAEPVEGEEPEILH---KLDLR------FRGVSWCDDSLALVQETWFKTTQTRTWLISPGSKDTAPLILFDRSSEDVY 268 (459)
Q Consensus 198 ~~~~~pf~g~~~~~L~---~~~~~------~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y 268 (459)
++...++.| +-+.|- ..+.. .+.|.-++||.-|+... |.....-+|.|++.++. .+++.-.+.+-.
T Consensus 217 v~~y~~~~g-~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN-Rg~dsI~~f~V~~~~g~--L~~~~~~~teg~- 291 (346)
T COG2706 217 VLEYNPAVG-KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN-RGHDSIAVFSVDPDGGK--LELVGITPTEGQ- 291 (346)
T ss_pred EEEEcCCCc-eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec-CCCCeEEEEEEcCCCCE--EEEEEEeccCCc-
Confidence 333322222 444331 12222 34466688885555433 22335667778876542 233321121110
Q ss_pred CCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECCCCceEEEe
Q 012630 269 SDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNINTGSKERIW 329 (459)
Q Consensus 269 ~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~~l~ 329 (459)
.|-.| ..++.|++++... -++|.-.+++.|-.||+.+.+.
T Consensus 292 -~PR~F--~i~~~g~~Liaa~------------------q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 292 -FPRDF--NINPSGRFLIAAN------------------QKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred -CCccc--eeCCCCCEEEEEc------------------cCCCcEEEEEEcCCCceEEecc
Confidence 11111 2356666554432 2333445667777778776553
No 46
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.31 E-value=0.015 Score=56.86 Aligned_cols=139 Identities=21% Similarity=0.199 Sum_probs=81.5
Q ss_pred cceEEEcC-CCcee-ecCCC---ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccc
Q 012630 75 TQLVLATL-DGTVK-EFGPP---AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVE 149 (459)
Q Consensus 75 sqL~~v~~-~G~~~-~l~~~---~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~ 149 (459)
..++++|. +|+.. .+..+ ..+.--.|||||++|+.+-++ +......|.|||... .-+.+.+.+..
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd--------~~~g~G~IgVyd~~~-~~~ri~E~~s~- 97 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND--------YETGRGVIGVYDAAR-GYRRIGEFPSH- 97 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc--------cCCCcEEEEEEECcC-CcEEEeEecCC-
Confidence 45666787 77655 44443 234588999999988665443 123457899999882 34445444322
Q ss_pred cccccccccccceeeeEEecCCCceEEEEEe-----ccCCcccccc-CCCCeEEeccCCCCCCCCceEeccc-----cce
Q 012630 150 NIPIAYNSVREGMRLISWRADRPSTLYWVET-----QDGGAAKVEV-SPRDIIYTQPAEPVEGEEPEILHKL-----DLR 218 (459)
Q Consensus 150 ~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~-----~d~g~~~~~~-~~~~~l~~~~~~pf~g~~~~~L~~~-----~~~ 218 (459)
--|+.++.|.|||+ +|+...- +|.|..+... .+...|..++. -+| +...-... ...
T Consensus 98 ---------GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~--~sG-~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 98 ---------GIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA--RSG-ALLEQVELPPDLHQLS 164 (305)
T ss_pred ---------CcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEec--CCC-ceeeeeecCccccccc
Confidence 33778999999998 7775431 1222111121 34456666754 144 53332222 223
Q ss_pred eccceeCCCCcEEEEEee
Q 012630 219 FRGVSWCDDSLALVQETW 236 (459)
Q Consensus 219 ~~~~~Ws~D~~al~~~~~ 236 (459)
+.-++|+.||.+++...|
T Consensus 165 iRHLa~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQY 182 (305)
T ss_pred eeeEEecCCCcEEEEEec
Confidence 566899999988776654
No 47
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.26 E-value=0.064 Score=51.00 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=83.7
Q ss_pred hhcceEEEcC-CCceeecCCCceeeecccC-CCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 73 TTTQLVLATL-DGTVKEFGPPAIYTAVEPS-PDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~~l~~~~~~~~~~~S-PDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
..++|++++. +++.+.+..++ ..++.+. +||+. ++... ..+.++|...+.+..+...+...
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l-~v~~~--------------~~~~~~d~~~g~~~~~~~~~~~~- 82 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRL-YVADS--------------GGIAVVDPDTGKVTVLADLPDGG- 82 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEE-EEEET--------------TCEEEEETTTTEEEEEEEEETTC-
T ss_pred CCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEE-EEEEc--------------CceEEEecCCCcEEEEeeccCCC-
Confidence 4567888887 55555555555 3455666 77554 44431 34566688877887777753211
Q ss_pred ccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcE
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLA 230 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~a 230 (459)
.....+..+...|||. |++........... ....||.++. ++ +.+.+...-..-.+++|++|+..
T Consensus 83 ------~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~---~~g~v~~~~~---~~-~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 83 ------VPFNRPNDVAVDPDGN--LYVTDSGGGGASGI---DPGSVYRIDP---DG-KVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp ------SCTEEEEEEEE-TTS---EEEEEECCBCTTCG---GSEEEEEEET---TS-EEEEEEEEESSEEEEEEETTSSE
T ss_pred ------cccCCCceEEEcCCCC--EEEEecCCCccccc---cccceEEECC---CC-eEEEEecCcccccceEECCcchh
Confidence 0134566889999987 66654432221110 0167999988 64 66666554444567999999865
Q ss_pred EEEEeecCCccEEEEEEcCC
Q 012630 231 LVQETWFKTTQTRTWLISPG 250 (459)
Q Consensus 231 l~~~~~~~~~~~~ly~v~~~ 250 (459)
|+... +...+||+++++
T Consensus 148 lyv~d---s~~~~i~~~~~~ 164 (246)
T PF08450_consen 148 LYVAD---SFNGRIWRFDLD 164 (246)
T ss_dssp EEEEE---TTTTEEEEEEEE
T ss_pred eeecc---cccceeEEEecc
Confidence 55433 233458888764
No 48
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.15 Score=54.05 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCEEEEEeecCCCCcceEEEECCCcceee-cc-cccCCCCCCcC--CceEEEEEECCCCcEEEEEEEccCCCCCCCCCC
Q 012630 355 NQLKILTSKESKTEITQYWIQSWPHKKCRQ-IT-DFPHPYPLLST--LQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGH 430 (459)
Q Consensus 355 d~~~i~~~~~s~~~P~ely~~~~~~g~~~~-LT-~~~~~~~~~~~--~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~k 430 (459)
+...+-|...|+..|+-+|-+++.+++..+ +. ..-..++-... -..|.+.|+|.||..|.=.++.=.+.+ .+++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k--~dg~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIK--LDGS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhh--hcCC
Confidence 456788999999999999999998774321 11 11122343333 389999999999999999999855544 3558
Q ss_pred ceEEEEEcCC
Q 012630 431 LLCLFWAYPG 440 (459)
Q Consensus 431 yP~Il~~Yp~ 440 (459)
.|++||+|..
T Consensus 470 ~P~LLygYGa 479 (712)
T KOG2237|consen 470 KPLLLYGYGA 479 (712)
T ss_pred CceEEEEecc
Confidence 9999999975
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.20 E-value=0.023 Score=58.22 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=46.1
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEec-CCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTA-DGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~-~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
.+..+++||||++.+-+. ....++++|. +|+.+..|...+ +...++-.++||||+.
T Consensus 192 FV~~VRysPDG~~Fat~g-------------sDgki~iyDGktge~vg~l~~~~----------aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG-------------SDGKIYIYDGKTGEKVGELEDSD----------AHKGSIFALSWSPDST 248 (603)
T ss_pred ceeeEEECCCCCeEEEec-------------CCccEEEEcCCCccEEEEecCCC----------CccccEEEEEECCCCc
Confidence 456999999999977664 4588999994 577777776532 3455778999999999
Q ss_pred ceEEEE
Q 012630 173 STLYWV 178 (459)
Q Consensus 173 ~~l~~~ 178 (459)
+++-+
T Consensus 249 -~~~T~ 253 (603)
T KOG0318|consen 249 -QFLTV 253 (603)
T ss_pred -eEEEe
Confidence 66654
No 50
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.0096 Score=59.95 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=77.7
Q ss_pred eeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCce
Q 012630 95 YTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPST 174 (459)
Q Consensus 95 ~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~ 174 (459)
+....++|+|+..+|++.+++|- |.||+...++.+|.+.-..+ ..+.+.|.-|+|++ .
T Consensus 260 i~~a~f~p~G~~~i~~s~rrky~------------ysyDle~ak~~k~~~~~g~e---------~~~~e~FeVShd~~-f 317 (514)
T KOG2055|consen 260 IQKAEFAPNGHSVIFTSGRRKYL------------YSYDLETAKVTKLKPPYGVE---------EKSMERFEVSHDSN-F 317 (514)
T ss_pred cceeeecCCCceEEEecccceEE------------EEeeccccccccccCCCCcc---------cchhheeEecCCCC-e
Confidence 35788999999777887777765 67898876666665532222 34778999999999 6
Q ss_pred EEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEEEEcCCC
Q 012630 175 LYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPGS 251 (459)
Q Consensus 175 l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~ 251 (459)
|+.+. ...+|+++.+ ..++-.--.+-.+....+.|+.|+..|+.... ++ .+|+.|+..
T Consensus 318 ia~~G------------~~G~I~lLha---kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~--~G--eV~v~nl~~ 375 (514)
T KOG2055|consen 318 IAIAG------------NNGHIHLLHA---KTKELITSFKIEGVVSDFTFSSDSKELLASGG--TG--EVYVWNLRQ 375 (514)
T ss_pred EEEcc------------cCceEEeehh---hhhhhhheeeeccEEeeEEEecCCcEEEEEcC--Cc--eEEEEecCC
Confidence 66431 2457888877 33232222235677888999999866655432 22 588888764
No 51
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.49 Score=46.66 Aligned_cols=250 Identities=12% Similarity=0.122 Sum_probs=113.3
Q ss_pred ceEEEcC-CCceeecCC---Cce-eeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEec--CCceeeeeecc-cc
Q 012630 76 QLVLATL-DGTVKEFGP---PAI-YTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTA--DGKFVRQLCEL-PL 147 (459)
Q Consensus 76 qL~~v~~-~G~~~~l~~---~~~-~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~--~g~~~~~lt~~-p~ 147 (459)
.-|.+|- +|+...+.. ++. -..+++++||++|+... |. ...+-|+-+ +|.. ..+.+. ..
T Consensus 67 aay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An------Y~------~g~v~v~p~~~dG~l-~~~v~~~~h 133 (346)
T COG2706 67 AAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN------YH------SGSVSVYPLQADGSL-QPVVQVVKH 133 (346)
T ss_pred EEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE------cc------CceEEEEEcccCCcc-ccceeeeec
Confidence 3444554 577776543 222 25789999999986553 21 133334332 2322 111110 00
Q ss_pred cccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEec----cccceeccce
Q 012630 148 VENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILH----KLDLRFRGVS 223 (459)
Q Consensus 148 ~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~----~~~~~~~~~~ 223 (459)
.+..|- -.-..+........||++ .|+ +.|-| .|.|++.++ +.|.-.... +....-..+.
T Consensus 134 ~g~~p~-~rQ~~~h~H~a~~tP~~~-~l~---v~DLG--------~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 134 TGSGPH-ERQESPHVHSANFTPDGR-YLV---VPDLG--------TDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred CCCCCC-ccccCCccceeeeCCCCC-EEE---EeecC--------CceEEEEEc---ccCccccccccccCCCCCcceEE
Confidence 111110 011234567788999988 454 23333 355666655 212222211 1111223478
Q ss_pred eCCCC-cEEE-EEeecCCccEEEEEEcCCCCCCCceEEeec-CCCCccCCC-CCCCeeeCCCCCEEEEEeeeccCCCcEE
Q 012630 224 WCDDS-LALV-QETWFKTTQTRTWLISPGSKDTAPLILFDR-SSEDVYSDP-GLPMMRKSSTGTRVIAKIKKENDQGTYI 299 (459)
Q Consensus 224 Ws~D~-~al~-~~~~~~~~~~~ly~v~~~~~~~~~~~l~d~-~~~d~y~~p-g~~~~~~~~dg~~v~~~~~~~~~~~~~l 299 (459)
++|++ +|.+ .+- +....+|.++...++ .+.|.-. ...+.|... +...-..++||+++....++
T Consensus 198 FHpn~k~aY~v~EL---~stV~v~~y~~~~g~--~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg-------- 264 (346)
T COG2706 198 FHPNGKYAYLVNEL---NSTVDVLEYNPAVGK--FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG-------- 264 (346)
T ss_pred EcCCCcEEEEEecc---CCEEEEEEEcCCCce--EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC--------
Confidence 99997 4444 333 456778999876433 3444211 111112211 11112347777766544322
Q ss_pred EEEcCCCCCCCCcceEEEEECCCCceEEEeecCcccceEEEEEeecCCCccccccCCCEEEEEeecCCCCcceEEEECCC
Q 012630 300 LLNGRGATPEGDVPFLDLFNINTGSKERIWESDKEKYYETAVALNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPH 379 (459)
Q Consensus 300 y~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~ 379 (459)
. +.-.++++|-.+|+.+.+-...-....-+ .+.++.+++-+++..+...+ -.+|.++-++
T Consensus 265 ------~----dsI~~f~V~~~~g~L~~~~~~~teg~~PR---------~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~T 324 (346)
T COG2706 265 ------H----DSIAVFSVDPDGGKLELVGITPTEGQFPR---------DFNINPSGRFLIAANQKSDN-ITVFERDKET 324 (346)
T ss_pred ------C----CeEEEEEEcCCCCEEEEEEEeccCCcCCc---------cceeCCCCCEEEEEccCCCc-EEEEEEcCCC
Confidence 1 12235566766665543211110000000 11223333445444444444 5677777666
Q ss_pred cceeeccc
Q 012630 380 KKCRQITD 387 (459)
Q Consensus 380 g~~~~LT~ 387 (459)
|.+..+..
T Consensus 325 G~L~~~~~ 332 (346)
T COG2706 325 GRLTLLGR 332 (346)
T ss_pred ceEEeccc
Confidence 76655443
No 52
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.91 E-value=0.41 Score=47.54 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=51.6
Q ss_pred hhcceEEEcC-CCceeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCC--CcceEEEecCCceeeeeecccccc
Q 012630 73 TTTQLVLATL-DGTVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKF--PQKVQVWTADGKFVRQLCELPLVE 149 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~--~~~~~v~d~~g~~~~~lt~~p~~~ 149 (459)
.+++++++|. +|+..=....+....+.+||||+.+++...- |+- ..+. ..-+.+||.+.=... .+.
T Consensus 15 ~~~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~--~sR---~~rG~RtDvv~~~D~~TL~~~--~EI---- 83 (342)
T PF06433_consen 15 MTSRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETF--YSR---GTRGERTDVVEIWDTQTLSPT--GEI---- 83 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEE--EEE---TTEEEEEEEEEEEETTTTEEE--EEE----
T ss_pred ccceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEE--Eec---cccccceeEEEEEecCcCccc--ceE----
Confidence 4689999997 6665433344555678899999999876421 111 1111 234667776542221 111
Q ss_pred ccccc-ccccccceeeeEEecCCCceEEEEEe
Q 012630 150 NIPIA-YNSVREGMRLISWRADRPSTLYWVET 180 (459)
Q Consensus 150 ~~P~~-~~~~~~~~r~~~WspDg~~~l~~~~~ 180 (459)
.+|-+ ...+-...+.+.-|+||+..+++.-+
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred ecCCcchheecccccceEEccCCcEEEEEccC
Confidence 11221 22333566788999999955555443
No 53
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0049 Score=64.42 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=65.6
Q ss_pred cCCCEEEEEeecCCCCcceEEEECCCcceeecccccCCCCCCcCCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceE
Q 012630 354 LNQLKILTSKESKTEITQYWIQSWPHKKCRQITDFPHPYPLLSTLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLC 433 (459)
Q Consensus 354 ~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~~~~~~~~~~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~ 433 (459)
.++..+.++..+.+.|+.+|..+..+++++.+-.-+..|. -..-+.|+...+|+||..|+=.++. ++.+. + +-|+
T Consensus 349 ~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~FD-a~~~~veQ~~atSkDGT~IPYFiv~-K~~~~--d-~~pT 423 (648)
T COG1505 349 KDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQFD-ADNYEVEQFFATSKDGTRIPYFIVR-KGAKK--D-ENPT 423 (648)
T ss_pred CCCcEEEEEeecccCCCceEEEecCCceehhhhhccCCcC-ccCceEEEEEEEcCCCccccEEEEe-cCCcC--C-CCce
Confidence 3567899999999999999999987777776665433332 2345899999999999999999998 77653 3 6899
Q ss_pred EEEEcCC
Q 012630 434 LFWAYPG 440 (459)
Q Consensus 434 Il~~Yp~ 440 (459)
+||+|..
T Consensus 424 ll~aYGG 430 (648)
T COG1505 424 LLYAYGG 430 (648)
T ss_pred EEEeccc
Confidence 9999975
No 54
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.76 E-value=0.0015 Score=43.29 Aligned_cols=28 Identities=36% Similarity=0.370 Sum_probs=20.5
Q ss_pred eecCC-CceeeecccCCCCCeEEEEEecc
Q 012630 87 KEFGP-PAIYTAVEPSPDQKYILITSIDR 114 (459)
Q Consensus 87 ~~l~~-~~~~~~~~~SPDG~~l~~~~~~~ 114 (459)
++++. ++....+.|||||++|+|++.+.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCC
Confidence 45554 45668999999999999998653
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.68 E-value=0.017 Score=57.55 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=66.5
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.+=-+++||+|||||-.+... ..-+|.+.-++. .+ |..+ .-+-..++..+.||||.+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~-----------Taiiw~v~~d~~-~k-l~~t---------lvgh~~~V~yi~wSPDdr- 282 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDS-----------TAIIWIVVYDVH-FK-LKKT---------LVGHSQPVSYIMWSPDDR- 282 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCc-----------eEEEEEEecCcc-ee-eeee---------eecccCceEEEEECCCCC-
Confidence 345789999999998876331 122333333333 11 1111 012234666899999999
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecccc--ceeccceeCCCCcEEEEEeecCCccEEEEEEcCCC
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLD--LRFRGVSWCDDSLALVQETWFKTTQTRTWLISPGS 251 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~--~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~ 251 (459)
.|+-.. .-+.+..+|+ ++| +-+.++... ......+|.|||..|+.... + ..++..+.++
T Consensus 283 yLlaCg------------~~e~~~lwDv--~tg-d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~--d--r~i~~wdlDg 343 (519)
T KOG0293|consen 283 YLLACG------------FDEVLSLWDV--DTG-DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP--D--RTIIMWDLDG 343 (519)
T ss_pred eEEecC------------chHheeeccC--Ccc-hhhhhcccCcCCCcceeEEccCCceeEecCC--C--CcEEEecCCc
Confidence 443111 1123667777 344 766666533 44556799999988887553 1 2366666653
No 56
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.58 E-value=0.12 Score=52.47 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=71.3
Q ss_pred hhcceEEEcC-CCce-eecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeeccccc
Q 012630 73 TTTQLVLATL-DGTV-KEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLV 148 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~-~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~ 148 (459)
..++|+++|. +.++ ..+... ..+..+.+||||+|+++.+ + ...+.++|+. ++.+++|.-
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r------------dg~vsviD~~~~~~v~~i~~---- 76 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-R------------DGTVSVIDLATGKVVATIKV---- 76 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-T------------TSEEEEEETTSSSEEEEEE-----
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-C------------CCeEEEEECCcccEEEEEec----
Confidence 4578999997 5553 345443 3356788999999987764 2 2467899976 455555522
Q ss_pred ccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc--------cceec
Q 012630 149 ENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL--------DLRFR 220 (459)
Q Consensus 149 ~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~--------~~~~~ 220 (459)
..+++++..|+||+ .|+-.... .+.+.++|+ ...++..-..+ ..|..
T Consensus 77 ----------G~~~~~i~~s~DG~-~~~v~n~~-----------~~~v~v~D~---~tle~v~~I~~~~~~~~~~~~Rv~ 131 (369)
T PF02239_consen 77 ----------GGNPRGIAVSPDGK-YVYVANYE-----------PGTVSVIDA---ETLEPVKTIPTGGMPVDGPESRVA 131 (369)
T ss_dssp ----------SSEEEEEEE--TTT-EEEEEEEE-----------TTEEEEEET---TT--EEEEEE--EE-TTTS---EE
T ss_pred ----------CCCcceEEEcCCCC-EEEEEecC-----------CCceeEecc---ccccceeecccccccccccCCCce
Confidence 34678999999999 55433211 234566665 32233332221 12334
Q ss_pred cceeCCCCcEEEEEeecCCccEEEEEEcCCCC
Q 012630 221 GVSWCDDSLALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 221 ~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
++.-++++..++.... + ..++|.++..+.
T Consensus 132 aIv~s~~~~~fVv~lk-d--~~~I~vVdy~d~ 160 (369)
T PF02239_consen 132 AIVASPGRPEFVVNLK-D--TGEIWVVDYSDP 160 (369)
T ss_dssp EEEE-SSSSEEEEEET-T--TTEEEEEETTTS
T ss_pred eEEecCCCCEEEEEEc-c--CCeEEEEEeccc
Confidence 4555666554554331 1 236888886543
No 57
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.50 E-value=0.65 Score=47.79 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=64.7
Q ss_pred eeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc-cce-eccceeCCCCcEEEEEeecC-C
Q 012630 163 RLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL-DLR-FRGVSWCDDSLALVQETWFK-T 239 (459)
Q Consensus 163 r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~-~~~-~~~~~Ws~D~~al~~~~~~~-~ 239 (459)
..+.+||||+ .|+|.....|.+ ...|+++++ ..| +.+... ... +.++.|++|+..|++....+ .
T Consensus 127 ~~~~~Spdg~-~la~~~s~~G~e-------~~~l~v~Dl---~tg--~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 127 GGFSVSPDGK-RLAYSLSDGGSE-------WYTLRVFDL---ETG--KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEETTTSS-EEEEEEEETTSS-------EEEEEEEET---TTT--EEEEEEEEEEESEEEEECTTSSEEEEEECSTTT
T ss_pred eeeeECCCCC-EEEEEecCCCCc-------eEEEEEEEC---CCC--cCcCCcccccccceEEEeCCCCEEEEEEeCccc
Confidence 4678999999 888886554433 346888888 543 333322 222 33499999988888876423 3
Q ss_pred c------cEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEe
Q 012630 240 T------QTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKI 289 (459)
Q Consensus 240 ~------~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~ 289 (459)
+ ..++|...+.++..+.+++++......+ ..-...+.||+++++..
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~----~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFW----FVSVSRSKDGRYLFISS 245 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTS----EEEEEE-TTSSEEEEEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcE----EEEEEecCcccEEEEEE
Confidence 4 7789998887665444566643321110 00123578888775543
No 58
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.45 E-value=0.015 Score=57.40 Aligned_cols=145 Identities=22% Similarity=0.253 Sum_probs=75.8
Q ss_pred CcccccccccccCCChhhHHHHHHHhhcceEEEcCCCcee---ecCC-CceeeecccCCCCCeEEEEEeccCcccccccC
Q 012630 48 QNVIQNRYTEGLLKDEFDEYLFEHYTTTQLVLATLDGTVK---EFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYT 123 (459)
Q Consensus 48 ~~~~~~rt~~d~l~~~~D~~~f~~~~~sqL~~v~~~G~~~---~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~ 123 (459)
.+++..| |+-.++... |.+-.---.-+|++.+-.-..+ +++. ...+..+.+||||+|||-.+
T Consensus 321 ~~~Al~r-Y~~~~~~~~-erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS------------ 386 (480)
T KOG0271|consen 321 QKKALER-YEAVLKDSG-ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS------------ 386 (480)
T ss_pred HHHHHHH-HHHhhccCc-ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee------------
Confidence 3444455 666666554 3332222233566665411222 3332 45668999999999998775
Q ss_pred CCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCC
Q 012630 124 KFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEP 203 (459)
Q Consensus 124 ~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~p 203 (459)
|...+-+|+... -+.|+..- . -...+..+.||.|.+ .|+ ....|. .|.+++.
T Consensus 387 -FDkSVkLW~g~t--Gk~lasfR--G--------Hv~~VYqvawsaDsR-LlV-S~SkDs-----------TLKvw~V-- 438 (480)
T KOG0271|consen 387 -FDKSVKLWDGRT--GKFLASFR--G--------HVAAVYQVAWSADSR-LLV-SGSKDS-----------TLKVWDV-- 438 (480)
T ss_pred -cccceeeeeCCC--cchhhhhh--h--------ccceeEEEEeccCcc-EEE-EcCCCc-----------eEEEEEe--
Confidence 668889998542 22333321 1 112445789999977 444 322222 2333333
Q ss_pred CCC-CCceEeccccceeccceeCCCCcEEEEEe
Q 012630 204 VEG-EEPEILHKLDLRFRGVSWCDDSLALVQET 235 (459)
Q Consensus 204 f~g-~~~~~L~~~~~~~~~~~Ws~D~~al~~~~ 235 (459)
.. .-...|..-......+.|+|||..+.+..
T Consensus 439 -~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 439 -RTKKLKQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred -eeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence 11 01112221122234489999997776543
No 59
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.11 E-value=0.022 Score=62.63 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=71.4
Q ss_pred cccccCCChhhHHHHHHHhhcceEEEcCCC-ceeec-C-CCceeeecccCCCCCeEEE-EEeccCcccccccCCCCcceE
Q 012630 55 YTEGLLKDEFDEYLFEHYTTTQLVLATLDG-TVKEF-G-PPAIYTAVEPSPDQKYILI-TSIDRPYSFTVSYTKFPQKVQ 130 (459)
Q Consensus 55 t~~d~l~~~~D~~~f~~~~~sqL~~v~~~G-~~~~l-~-~~~~~~~~~~SPDG~~l~~-~~~~~p~s~~v~~~~~~~~~~ 130 (459)
|+.-.|.+..| .++.|+++|.+| ..+.+ . ....+.+|.|||||++|+| ++.+. + .....||
T Consensus 316 ~f~tkiAfv~~-------~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~-----~---~g~s~vY 380 (912)
T TIGR02171 316 TYKAKLAFRND-------VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG-----L---PGKSSVY 380 (912)
T ss_pred cceeeEEEEEc-------CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC-----C---CCCceEE
Confidence 35555555543 334999999944 66655 3 4555678999999999999 54321 0 0235588
Q ss_pred EEecCCceeeeeecccccccccccccccccceeeeEEe--cCCCceEEEEEeccCCccccccCCC-CeEEeccCCCCC-C
Q 012630 131 VWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWR--ADRPSTLYWVETQDGGAAKVEVSPR-DIIYTQPAEPVE-G 206 (459)
Q Consensus 131 v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~Ws--pDg~~~l~~~~~~d~g~~~~~~~~~-~~l~~~~~~pf~-g 206 (459)
|.++...... +..+++. +...++|+ ..|.-.|+||- |.+....+..+. ...|.+ ||. |
T Consensus 381 v~~L~t~~~~-~vkl~ve------------~aaiprwrv~e~gdt~ivyv~--~a~nn~d~~~~~~~stw~v---~f~~g 442 (912)
T TIGR02171 381 VRNLNASGSG-LVKLPVE------------NAAIPRWRVLENGDTVIVYVS--DASNNKDDATFAAYSTWQV---PFANG 442 (912)
T ss_pred EEehhccCCC-ceEeecc------------cccccceEecCCCCeEEEEEc--CCCCCcchhhhhhcceEEE---EecCC
Confidence 8887522111 1122221 11123676 66776677764 333322222222 355555 444 2
Q ss_pred --CCceEecccc
Q 012630 207 --EEPEILHKLD 216 (459)
Q Consensus 207 --~~~~~L~~~~ 216 (459)
|+|+.|..+.
T Consensus 443 kfg~p~kl~dga 454 (912)
T TIGR02171 443 KFGTPKKLFDGA 454 (912)
T ss_pred CCCCchhhhccc
Confidence 4888887643
No 60
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.38 Score=46.28 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=41.7
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.|..=.+||||++|..+-+. |+ .-..-|.|||.. ..-..+.+.+ .---|+..+.|.+||+
T Consensus 115 fyGHGvfs~dG~~LYATEnd--fd------~~rGViGvYd~r-~~fqrvgE~~----------t~GiGpHev~lm~DGr- 174 (366)
T COG3490 115 FYGHGVFSPDGRLLYATEND--FD------PNRGVIGVYDAR-EGFQRVGEFS----------THGIGPHEVTLMADGR- 174 (366)
T ss_pred eecccccCCCCcEEEeecCC--CC------CCCceEEEEecc-cccceecccc----------cCCcCcceeEEecCCc-
Confidence 45567899999988776543 21 113567888865 2223333322 2335788999999999
Q ss_pred eEEEE
Q 012630 174 TLYWV 178 (459)
Q Consensus 174 ~l~~~ 178 (459)
+|+.+
T Consensus 175 tlvva 179 (366)
T COG3490 175 TLVVA 179 (366)
T ss_pred EEEEe
Confidence 77755
No 61
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=0.13 Score=48.81 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=70.0
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.+.+++|||.|++|+..+ |...+-||--.+++-..++.+...|+ .+..++||++|.
T Consensus 63 sVRsvAwsp~g~~La~aS-------------FD~t~~Iw~k~~~efecv~~lEGHEn----------EVK~Vaws~sG~- 118 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASAS-------------FDATVVIWKKEDGEFECVATLEGHEN----------EVKCVAWSASGN- 118 (312)
T ss_pred eeeeeeecCCCcEEEEee-------------ccceEEEeecCCCceeEEeeeecccc----------ceeEEEEcCCCC-
Confidence 467999999999998875 55677777666666666666544443 567899999999
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc----ccceeccceeCCCCcEEEEEeecCCccEEEEEEcC
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK----LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~----~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
.|+... . -..+|++.. +.++.-+... -....-.+.|.|-.-.|++-. + +...++|.-..
T Consensus 119 ~LATCS-R-----------DKSVWiWe~---deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-Y-DnTIk~~~~~~ 181 (312)
T KOG0645|consen 119 YLATCS-R-----------DKSVWIWEI---DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-Y-DNTIKVYRDED 181 (312)
T ss_pred EEEEee-C-----------CCeEEEEEe---cCCCcEEEEeeeccccccccEEEEcCCcceeEEec-c-CCeEEEEeecC
Confidence 666331 1 125666666 3223333222 222345589998432344333 2 34467777654
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.88 E-value=0.074 Score=58.77 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=67.7
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-----------cee-----eeeeccccccccccccc
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-----------KFV-----RQLCELPLVENIPIAYN 156 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-----------~~~-----~~lt~~p~~~~~P~~~~ 156 (459)
+.+.-++|||||+|||+-+.. +-+.||..++ +.. +.+..+ -
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD-------------~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l----------~ 126 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDD-------------RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL----------R 126 (942)
T ss_pred CceeEEEECCCCCeEeeccCc-------------ceEEEeeecccCCcccccccccccccceeeEEEEE----------e
Confidence 345688999999999998743 3445555431 100 111111 0
Q ss_pred ccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEee
Q 012630 157 SVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETW 236 (459)
Q Consensus 157 ~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~ 236 (459)
.-...+-++.|+||+. .|+-+.. -..|-+++++-| . ..+.|-.-..-.-++.|.|=|..|....
T Consensus 127 ~H~~DV~Dv~Wsp~~~-~lvS~s~------------DnsViiwn~~tF-~-~~~vl~~H~s~VKGvs~DP~Gky~ASqs- 190 (942)
T KOG0973|consen 127 GHDSDVLDVNWSPDDS-LLVSVSL------------DNSVIIWNAKTF-E-LLKVLRGHQSLVKGVSWDPIGKYFASQS- 190 (942)
T ss_pred cCCCccceeccCCCcc-EEEEecc------------cceEEEEccccc-e-eeeeeecccccccceEECCccCeeeeec-
Confidence 1123456889999988 6664432 123444444334 2 3333322233356789999898888776
Q ss_pred cCCccEEEEEEc
Q 012630 237 FKTTQTRTWLIS 248 (459)
Q Consensus 237 ~~~~~~~ly~v~ 248 (459)
+++..++|+.+
T Consensus 191 -dDrtikvwrt~ 201 (942)
T KOG0973|consen 191 -DDRTLKVWRTS 201 (942)
T ss_pred -CCceEEEEEcc
Confidence 47888999854
No 63
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.78 E-value=0.1 Score=56.88 Aligned_cols=109 Identities=16% Similarity=0.265 Sum_probs=65.1
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeeccccccccccccccc-ccceeeeEEec
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSV-REGMRLISWRA 169 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~-~~~~r~~~Wsp 169 (459)
.+.+..++++|.|++||+++. ...+++|+++ |...+.++.++-. ++.. ..-...++|+|
T Consensus 138 ~apVl~l~~~p~~~fLAvss~-------------dG~v~iw~~~~~~~~~tl~~v~k~------n~~~~s~i~~~~aW~P 198 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSC-------------DGKVQIWDLQDGILSKTLTGVDKD------NEFILSRICTRLAWHP 198 (933)
T ss_pred CCceeeeeEcCCCCEEEEEec-------------CceEEEEEcccchhhhhcccCCcc------ccccccceeeeeeecC
Confidence 455679999999999999974 3789999987 4445556554321 1111 22334679999
Q ss_pred CCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc---cceeccceeCCCCcEEEEEe
Q 012630 170 DRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL---DLRFRGVSWCDDSLALVQET 235 (459)
Q Consensus 170 Dg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~---~~~~~~~~Ws~D~~al~~~~ 235 (459)
+|. +++...+ .+.|.+.+. .|.+..--... ...+..++|+|.|..|....
T Consensus 199 k~g-~la~~~~------------d~~Vkvy~r---~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 199 KGG-TLAVPPV------------DNTVKVYSR---KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred CCC-eEEeecc------------CCeEEEEcc---CCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 988 5554422 233444444 33232221111 11266689999987777653
No 64
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.77 E-value=0.47 Score=45.56 Aligned_cols=104 Identities=16% Similarity=0.030 Sum_probs=52.6
Q ss_pred cceEEEcCCCceeecCC----C-ceeeecccCCCCCeEEEEE--eccCccc-----------------ccc-cCCCCcce
Q 012630 75 TQLVLATLDGTVKEFGP----P-AIYTAVEPSPDQKYILITS--IDRPYSF-----------------TVS-YTKFPQKV 129 (459)
Q Consensus 75 sqL~~v~~~G~~~~l~~----~-~~~~~~~~SPDG~~l~~~~--~~~p~s~-----------------~v~-~~~~~~~~ 129 (459)
++|+.++ ++..+++.. . ....++.+||||+.+||+. ..+.--+ .-| |..+ ..+
T Consensus 2 G~l~~~~-~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~-g~~ 79 (253)
T PF10647_consen 2 GQLVRVS-GGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPD-GWV 79 (253)
T ss_pred CcEEEec-CCceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCC-CCE
Confidence 4566655 555666543 1 1456899999999998887 2111011 111 1222 445
Q ss_pred EEEecCCceeeeeeccccccccccccccccc--ceeeeEEecCCCceEEEEEec
Q 012630 130 QVWTADGKFVRQLCELPLVENIPIAYNSVRE--GMRLISWRADRPSTLYWVETQ 181 (459)
Q Consensus 130 ~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~--~~r~~~WspDg~~~l~~~~~~ 181 (459)
|+++......+.+.........++..+.... .+..+.+||||. +++++...
T Consensus 80 W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~ 132 (253)
T PF10647_consen 80 WTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGT-RVAVVVED 132 (253)
T ss_pred EEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCc-EEEEEEec
Confidence 5554322222222111111112222222222 678999999999 78777543
No 65
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.61 E-value=1.5 Score=43.57 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=46.8
Q ss_pred cceEEEcC--CCceee---cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeeccccc
Q 012630 75 TQLVLATL--DGTVKE---FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLV 148 (459)
Q Consensus 75 sqL~~v~~--~G~~~~---l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~ 148 (459)
.+|.++++ +|+.+. +...+....+.+||||++|++.... ...+.+|+++ .+....+...+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~------------~~~i~~~~~~~~g~l~~~~~~~~- 78 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP------------EFRVLSYRIADDGALTFAAESPL- 78 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC------------CCcEEEEEECCCCceEEeeeecC-
Confidence 56677776 465443 3233445678999999999776421 2456667665 223333332221
Q ss_pred ccccccccccccceeeeEEecCCCceEEEE
Q 012630 149 ENIPIAYNSVREGMRLISWRADRPSTLYWV 178 (459)
Q Consensus 149 ~~~P~~~~~~~~~~r~~~WspDg~~~l~~~ 178 (459)
...+..+.++|||+ .|+-+
T Consensus 79 ----------~~~p~~i~~~~~g~-~l~v~ 97 (330)
T PRK11028 79 ----------PGSPTHISTDHQGR-FLFSA 97 (330)
T ss_pred ----------CCCceEEEECCCCC-EEEEE
Confidence 12456789999998 56543
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.60 E-value=0.38 Score=45.62 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=76.3
Q ss_pred cceEEEcC-CCceeecCC------C-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccc
Q 012630 75 TQLVLATL-DGTVKEFGP------P-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELP 146 (459)
Q Consensus 75 sqL~~v~~-~G~~~~l~~------~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p 146 (459)
..+.++|+ +|+.+.+.. + ....++.+.|||+ |.|+.......... ....++.++.+ +.+..+...
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~----~~g~v~~~~~~-~~~~~~~~~- 132 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGI----DPGSVYRIDPD-GKVTVVADG- 132 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCG----GSEEEEEEETT-SEEEEEEEE-
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccc----cccceEEECCC-CeEEEEecC-
Confidence 45566687 787775543 1 2336999999999 66665432111110 01568888888 444444331
Q ss_pred ccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCC---CceEeccccc---eec
Q 012630 147 LVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGE---EPEILHKLDL---RFR 220 (459)
Q Consensus 147 ~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~---~~~~L~~~~~---~~~ 220 (459)
-..+..+.|+||++ +||+++. ....|+.++... .++ ..+.+..... ..-
T Consensus 133 ------------~~~pNGi~~s~dg~-~lyv~ds-----------~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 133 ------------LGFPNGIAFSPDGK-TLYVADS-----------FNGRIWRFDLDA-DGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp ------------ESSEEEEEEETTSS-EEEEEET-----------TTTEEEEEEEET-TTCCEEEEEEEEE-SSSSCEEE
T ss_pred ------------cccccceEECCcch-heeeccc-----------ccceeEEEeccc-cccceeeeeeEEEcCCCCcCCC
Confidence 12456889999999 8887653 244577776500 221 1233322221 234
Q ss_pred cceeCCCCcEEEEEeecCCccEEEEEEcCC
Q 012630 221 GVSWCDDSLALVQETWFKTTQTRTWLISPG 250 (459)
Q Consensus 221 ~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~ 250 (459)
++....+|..++... ...+|++++++
T Consensus 188 G~~vD~~G~l~va~~----~~~~I~~~~p~ 213 (246)
T PF08450_consen 188 GLAVDSDGNLWVADW----GGGRIVVFDPD 213 (246)
T ss_dssp EEEEBTTS-EEEEEE----TTTEEEEEETT
T ss_pred cceEcCCCCEEEEEc----CCCEEEEECCC
Confidence 567777776555432 22358888876
No 67
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.51 E-value=1.4 Score=43.68 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=54.0
Q ss_pred hhcceEEEcC-CCce-eecCCC------ceeeecccCCCCCeEEEEEec---cCcccccccCCCCcceEEEecCCceeee
Q 012630 73 TTTQLVLATL-DGTV-KEFGPP------AIYTAVEPSPDQKYILITSID---RPYSFTVSYTKFPQKVQVWTADGKFVRQ 141 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~-~~l~~~------~~~~~~~~SPDG~~l~~~~~~---~p~s~~v~~~~~~~~~~v~d~~g~~~~~ 141 (459)
....++++++ .|.. +.++.. ....+....|||++ .|.... .+.+ ..+....+|.+|..|..++.
T Consensus 83 ~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~-wfgt~~~~~~~~~----~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 83 CEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI-WFGDMGYFDLGKS----EERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred EccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE-EEeCCCccccCcc----ccCCcceEEEEcCCCCEEEe
Confidence 3344555555 4544 555441 12248889999975 466544 1112 11223478889887888877
Q ss_pred eecccccccccccccccccceeeeEEecCCCceEEEEEe
Q 012630 142 LCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVET 180 (459)
Q Consensus 142 lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~ 180 (459)
+...- ..+.++.||||++ ++|++.+
T Consensus 158 ~~~~~-------------~~~NGla~SpDg~-tly~aDT 182 (307)
T COG3386 158 LDDDL-------------TIPNGLAFSPDGK-TLYVADT 182 (307)
T ss_pred ecCcE-------------EecCceEECCCCC-EEEEEeC
Confidence 76621 1223679999999 9998864
No 68
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.47 E-value=0.52 Score=46.77 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=64.1
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC--CceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD--GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~--g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
..+.|+|||++|+++.. ....+.+|+++ ++..+.+.... ..|..+.. ...+..+.++|||+
T Consensus 178 ~~~~~~pdg~~lyv~~~------------~~~~v~v~~~~~~~~~~~~~~~~~---~~p~~~~~-~~~~~~i~~~pdg~- 240 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNE------------LNSSVDVWQLKDPHGEIECVQTLD---MMPADFSD-TRWAADIHITPDGR- 240 (330)
T ss_pred ceEEECCCCCEEEEEec------------CCCEEEEEEEeCCCCCEEEEEEEe---cCCCcCCC-CccceeEEECCCCC-
Confidence 47899999999877642 24677888875 23332222211 11211111 11234578999998
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc---ccceeccceeCCCCcEEEEEeecCCccEEEEEEcCC
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK---LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPG 250 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~---~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~ 250 (459)
.||-. +.++ +.|.+++..+ ++ ....+.. +......+.+++||..|+.... ......+|.++..
T Consensus 241 ~lyv~---~~~~--------~~I~v~~i~~-~~-~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~~ 306 (330)
T PRK11028 241 HLYAC---DRTA--------SLISVFSVSE-DG-SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDGE 306 (330)
T ss_pred EEEEe---cCCC--------CeEEEEEEeC-CC-CeEEEeEEEeccccCCceEECCCCCEEEEEEc-cCCcEEEEEEcCC
Confidence 55533 2221 2344443300 33 2222222 2222345788999854443332 3556778888765
Q ss_pred CC
Q 012630 251 SK 252 (459)
Q Consensus 251 ~~ 252 (459)
++
T Consensus 307 ~g 308 (330)
T PRK11028 307 TG 308 (330)
T ss_pred CC
Confidence 43
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.17 Score=48.90 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=41.0
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEec-CCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTA-DGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~-~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
....+.+|||||+|+.+++. ..++++|. +|......+..|...+.| -+..++|||+
T Consensus 189 ew~~l~FS~dGK~iLlsT~~-------------s~~~~lDAf~G~~~~tfs~~~~~~~~~----------~~a~ftPds~ 245 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNA-------------SFIYLLDAFDGTVKSTFSGYPNAGNLP----------LSATFTPDSK 245 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCC-------------CcEEEEEccCCcEeeeEeeccCCCCcc----------eeEEECCCCc
Confidence 45799999999999999753 55688884 566666666655544444 3679999998
No 70
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.35 E-value=0.042 Score=54.88 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
..-+..++|-|+|+||+-.+ |....-+||+..+...-+ .+ +-+.++.+++|.+||
T Consensus 261 ~~RVs~VafHPsG~~L~Tas-------------fD~tWRlWD~~tk~ElL~-----QE-------GHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTAS-------------FDSTWRLWDLETKSELLL-----QE-------GHSKGVFSIAFQPDG 315 (459)
T ss_pred hhhheeeeecCCCceeeecc-------------cccchhhcccccchhhHh-----hc-------ccccccceeEecCCC
Confidence 34457999999999997775 445666889875432211 11 235577899999999
Q ss_pred CceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc-cceeccceeCCCCcEEEEEeecCCccEEEEEEc
Q 012630 172 PSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL-DLRFRGVSWCDDSLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 172 ~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~-~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~ 248 (459)
. |+-+ +| .+ ....||-+.. | .-..+..+ ...+-++.|+|+|+.+..... +...+||.+.
T Consensus 316 S--L~~t----GG-lD----~~~RvWDlRt----g-r~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDLR 375 (459)
T KOG0272|consen 316 S--LAAT----GG-LD----SLGRVWDLRT----G-RCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDLR 375 (459)
T ss_pred c--eeec----cC-cc----chhheeeccc----C-cEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeeec
Confidence 8 3322 22 11 1223333322 3 33222221 223455899999988887542 4556677663
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.23 E-value=0.14 Score=51.32 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=71.0
Q ss_pred cceEEEcCCCcee----ecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 75 TQLVLATLDGTVK----EFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 75 sqL~~v~~~G~~~----~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
.-+|.|.-+++.+ ..+....+.-+.||||.+||+... +...+.+||++.++.+......
T Consensus 248 aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg-------------~~e~~~lwDv~tgd~~~~y~~~---- 310 (519)
T KOG0293|consen 248 AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG-------------FDEVLSLWDVDTGDLRHLYPSG---- 310 (519)
T ss_pred EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC-------------chHheeeccCCcchhhhhcccC----
Confidence 3445444444422 223345567899999999996663 3456899999877666554431
Q ss_pred ccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc--cceeccceeCCCC
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL--DLRFRGVSWCDDS 228 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~--~~~~~~~~Ws~D~ 228 (459)
....+.+-.|-|||.. ++ +..+ ...+++++. +| +...-+.. ..+...++-++||
T Consensus 311 -------~~~S~~sc~W~pDg~~-~V-~Gs~-----------dr~i~~wdl---Dg-n~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 311 -------LGFSVSSCAWCPDGFR-FV-TGSP-----------DRTIIMWDL---DG-NILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred -------cCCCcceeEEccCCce-eE-ecCC-----------CCcEEEecC---Cc-chhhcccccccceeEEEEEcCCC
Confidence 1234557799999994 33 1122 246888888 76 43332321 2335667778888
Q ss_pred cEEEEE
Q 012630 229 LALVQE 234 (459)
Q Consensus 229 ~al~~~ 234 (459)
..++..
T Consensus 367 k~vl~v 372 (519)
T KOG0293|consen 367 KYVLLV 372 (519)
T ss_pred cEEEEE
Confidence 555543
No 72
>PRK10115 protease 2; Provisional
Probab=95.11 E-value=0.19 Score=55.40 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=56.5
Q ss_pred ceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCC--ceEeccccceeccceeCCCCcEEEEEeecC
Q 012630 161 GMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEE--PEILHKLDLRFRGVSWCDDSLALVQETWFK 238 (459)
Q Consensus 161 ~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~--~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~ 238 (459)
....+.|||||+ .|+|.... .|+. +-.|++++. .+|+ +..+.... ..+.|++|+..|++....+
T Consensus 128 ~l~~~~~Spdg~-~la~~~d~-~G~E------~~~l~v~d~---~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~ 193 (686)
T PRK10115 128 TLGGMAITPDNT-IMALAEDF-LSRR------QYGIRFRNL---ETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHP 193 (686)
T ss_pred EEeEEEECCCCC-EEEEEecC-CCcE------EEEEEEEEC---CCCCCCCccccCcc---eEEEEeeCCCEEEEEEecC
Confidence 345789999999 88887543 3332 457888887 5545 33343222 4489999986666654322
Q ss_pred --CccEEEEEEcCCCCCCCceEEee
Q 012630 239 --TTQTRTWLISPGSKDTAPLILFD 261 (459)
Q Consensus 239 --~~~~~ly~v~~~~~~~~~~~l~d 261 (459)
.+..++|+.++.++..+.+++++
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~ 218 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYE 218 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEe
Confidence 35688999999876434566654
No 73
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.02 E-value=0.42 Score=50.38 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=56.4
Q ss_pred ccccCCChhhHHHHHH---HhhcceEEEcCCCceeecCC--------CceeeecccCCCCCeEEEEEeccCcccccccCC
Q 012630 56 TEGLLKDEFDEYLFEH---YTTTQLVLATLDGTVKEFGP--------PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTK 124 (459)
Q Consensus 56 ~~d~l~~~~D~~~f~~---~~~sqL~~v~~~G~~~~l~~--------~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~ 124 (459)
..|+--++.|...+.- ...=.||++..+|-.+.... ...+.+++|-|=-.-++.++ +
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a-----s------- 697 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA-----S------- 697 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh-----h-------
Confidence 6788888888766542 23345666666554443333 23345666666443333332 2
Q ss_pred CCcceEEEecCC-ceeeeeecccccccccccccccccceeeeEEecCCCceEEEEE
Q 012630 125 FPQKVQVWTADG-KFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVE 179 (459)
Q Consensus 125 ~~~~~~v~d~~g-~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~ 179 (459)
....|.+||+.. .+-..+... ..++-+++|||||+ +++-+.
T Consensus 698 yd~Ti~lWDl~~~~~~~~l~gH-------------tdqIf~~AWSpdGr-~~AtVc 739 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRLVGH-------------TDQIFGIAWSPDGR-RIATVC 739 (1012)
T ss_pred ccceeeeeehhhhhhhheeccC-------------cCceeEEEECCCCc-ceeeee
Confidence 237789999763 332222221 22455899999999 777663
No 74
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.97 E-value=0.23 Score=49.04 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=64.4
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.+.+++|.+||..|+-.+. ....+-|||.+.+....|-. .+ ..|...+.|||||.
T Consensus 197 pVtsmqwn~dgt~l~tAS~------------gsssi~iWdpdtg~~~pL~~--------~g----lgg~slLkwSPdgd- 251 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASF------------GSSSIMIWDPDTGQKIPLIP--------KG----LGGFSLLKWSPDGD- 251 (445)
T ss_pred eeeEEEEcCCCCEEeeccc------------CcceEEEEcCCCCCcccccc--------cC----CCceeeEEEcCCCC-
Confidence 3469999999998755531 14678899987554443321 11 23556889999999
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEEEEcC
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
.|+ ....|++- .|+...- -.+ .|+-.+. .++.....|+|+|.-|++.- .....+|.+.-
T Consensus 252 ~lf-aAt~davf---------rlw~e~q-~wt-~erw~lg--sgrvqtacWspcGsfLLf~~---sgsp~lysl~f 310 (445)
T KOG2139|consen 252 VLF-AATCDAVF---------RLWQENQ-SWT-KERWILG--SGRVQTACWSPCGSFLLFAC---SGSPRLYSLTF 310 (445)
T ss_pred EEE-Eeccccee---------eeehhcc-cce-ecceecc--CCceeeeeecCCCCEEEEEE---cCCceEEEEee
Confidence 333 33333321 1221111 112 1333332 33788899999985555543 22345777753
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.90 E-value=0.08 Score=49.99 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=41.0
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc-eeeeeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK-FVRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~-~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
+....-+.++|||||+|.-+.. ..+-+||++-= =+|.++++ .-++|.+++|-|
T Consensus 189 ~snCicI~f~p~GryfA~GsAD-------------AlvSLWD~~ELiC~R~isRl-------------dwpVRTlSFS~d 242 (313)
T KOG1407|consen 189 PSNCICIEFDPDGRYFATGSAD-------------ALVSLWDVDELICERCISRL-------------DWPVRTLSFSHD 242 (313)
T ss_pred CcceEEEEECCCCceEeecccc-------------ceeeccChhHhhhheeeccc-------------cCceEEEEeccC
Confidence 4445678999999999988632 45667886521 13555554 347889999999
Q ss_pred CCceEE
Q 012630 171 RPSTLY 176 (459)
Q Consensus 171 g~~~l~ 176 (459)
|+ .|+
T Consensus 243 g~-~lA 247 (313)
T KOG1407|consen 243 GR-MLA 247 (313)
T ss_pred cc-eee
Confidence 99 665
No 76
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.90 E-value=1.3 Score=47.72 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=71.3
Q ss_pred eeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc-eeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 95 YTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK-FVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 95 ~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~-~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
+..++.||||++|+--.. ...+-|||...+ -....++ -..++..+.|+-+|..
T Consensus 353 i~~l~YSpDgq~iaTG~e-------------DgKVKvWn~~SgfC~vTFte-------------Hts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAE-------------DGKVKVWNTQSGFCFVTFTE-------------HTSGVTAVQFTARGNV 406 (893)
T ss_pred eeeEEECCCCcEEEeccC-------------CCcEEEEeccCceEEEEecc-------------CCCceEEEEEEecCCE
Confidence 468999999999977653 366788886533 2222222 2346667788877763
Q ss_pred eEEEEEeccCCcccc----------------------------c---cCCCC--eEEeccCCCCCCCCceEecc-cccee
Q 012630 174 TLYWVETQDGGAAKV----------------------------E---VSPRD--IIYTQPAEPVEGEEPEILHK-LDLRF 219 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~----------------------------~---~~~~~--~l~~~~~~pf~g~~~~~L~~-~~~~~ 219 (459)
.+ ....|+--... + ....+ .|++++. ..|.-.++.+ -++..
T Consensus 407 ll--ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~---qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 407 LL--SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV---QTGQLLDILSGHEGPV 481 (893)
T ss_pred EE--EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe---ecCeeeehhcCCCCcc
Confidence 22 22333321000 0 01111 4555655 2234444443 35556
Q ss_pred ccceeCCCCcEEEEEeecCCccEEEEEEcCCCC
Q 012630 220 RGVSWCDDSLALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 220 ~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
.++.+++++..|++..| +...++|-+=...+
T Consensus 482 s~l~f~~~~~~LaS~SW--DkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSW--DKTVRIWDIFSSSG 512 (893)
T ss_pred eeeEEccccCeEEeccc--cceEEEEEeeccCc
Confidence 77788998888888887 45678888754433
No 77
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.58 E-value=1.2 Score=45.35 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=73.0
Q ss_pred hcceEEEcC-CCc-eeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeeccccccc
Q 012630 74 TTQLVLATL-DGT-VKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVEN 150 (459)
Q Consensus 74 ~sqL~~v~~-~G~-~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~ 150 (459)
.+.|-++|+ +++ ++.+..+....++++||||+||++.. . .+..+-|+|.+ .+.++.|.-......
T Consensus 57 dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n-~-----------~~~~v~v~D~~tle~v~~I~~~~~~~~ 124 (369)
T PF02239_consen 57 DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVAN-Y-----------EPGTVSVIDAETLEPVKTIPTGGMPVD 124 (369)
T ss_dssp TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEE-E-----------ETTEEEEEETTT--EEEEEE--EE-TT
T ss_pred CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEe-c-----------CCCceeEeccccccceeeccccccccc
Confidence 467899999 665 44565566667999999999997764 2 24678888865 444555533211110
Q ss_pred ccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEec--cccceeccceeCCCC
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILH--KLDLRFRGVSWCDDS 228 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~--~~~~~~~~~~Ws~D~ 228 (459)
.....+..+.=+|+++..++ . . ...++|+.++. ....+.... .......+..|++|+
T Consensus 125 ------~~~~Rv~aIv~s~~~~~fVv-~--l---------kd~~~I~vVdy---~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 125 ------GPESRVAAIVASPGRPEFVV-N--L---------KDTGEIWVVDY---SDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp ------TS---EEEEEE-SSSSEEEE-E--E---------TTTTEEEEEET---TTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred ------ccCCCceeEEecCCCCEEEE-E--E---------ccCCeEEEEEe---ccccccceeeecccccccccccCccc
Confidence 01122335555777663222 1 1 11457888887 321222211 223334557899998
Q ss_pred cEEEEEeecCCccEEEEEEcCCC
Q 012630 229 LALVQETWFKTTQTRTWLISPGS 251 (459)
Q Consensus 229 ~al~~~~~~~~~~~~ly~v~~~~ 251 (459)
..|+..... ..++-+++.++
T Consensus 184 ry~~va~~~---sn~i~viD~~~ 203 (369)
T PF02239_consen 184 RYFLVAANG---SNKIAVIDTKT 203 (369)
T ss_dssp SEEEEEEGG---GTEEEEEETTT
T ss_pred ceeeecccc---cceeEEEeecc
Confidence 666544321 11677777664
No 78
>PTZ00421 coronin; Provisional
Probab=94.42 E-value=0.51 Score=49.90 Aligned_cols=111 Identities=13% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCceeeecccCC-CCCeEEEEEeccCcccccccCCCCcceEEEecCCce-eeeeecccccccccccccccccceeeeEEe
Q 012630 91 PPAIYTAVEPSP-DQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF-VRQLCELPLVENIPIAYNSVREGMRLISWR 168 (459)
Q Consensus 91 ~~~~~~~~~~SP-DG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~-~~~lt~~p~~~~~P~~~~~~~~~~r~~~Ws 168 (459)
..+.+.+++||| |+++|+..+. ...|.|||+..+. ...+.. ++ ..+..-...+..+.|+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~-------------DgtIkIWdi~~~~~~~~~~~-~l-----~~L~gH~~~V~~l~f~ 134 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASE-------------DGTIMGWGIPEEGLTQNISD-PI-----VHLQGHTKKVGIVSFH 134 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeC-------------CCEEEEEecCCCccccccCc-ce-----EEecCCCCcEEEEEeC
Confidence 345678999999 8888766653 3678899975321 111100 00 0111123456789999
Q ss_pred cCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-ccceeccceeCCCCcEEEEEe
Q 012630 169 ADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRFRGVSWCDDSLALVQET 235 (459)
Q Consensus 169 pDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~~~~~Ws~D~~al~~~~ 235 (459)
|++...|+ +...| ..|.+++. ..++...... -...+..+.|++|+..|+...
T Consensus 135 P~~~~iLa-Sgs~D-----------gtVrIWDl---~tg~~~~~l~~h~~~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 135 PSAMNVLA-SAGAD-----------MVVNVWDV---ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187 (493)
T ss_pred cCCCCEEE-EEeCC-----------CEEEEEEC---CCCeEEEEEcCCCCceEEEEEECCCCEEEEec
Confidence 99763444 32221 24666665 3223332222 233467789999987666544
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.35 E-value=0.64 Score=43.11 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=68.8
Q ss_pred hcceEEEcC-CCcee-ecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeecccccc
Q 012630 74 TTQLVLATL-DGTVK-EFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCELPLVE 149 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~-~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~~p~~~ 149 (459)
.+.|.++++ +++.. .+.. ...+..+.|+|||++|++... ...+.+||... ..+..+...
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~~---- 218 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-------------DGTIKLWDLSTGKCLGTLRGH---- 218 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-------------CCcEEEEECCCCceecchhhc----
Confidence 456777777 45433 3333 335678999999999988753 36788999764 333333111
Q ss_pred cccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCce-EeccccceeccceeCCCC
Q 012630 150 NIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPE-ILHKLDLRFRGVSWCDDS 228 (459)
Q Consensus 150 ~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~-~L~~~~~~~~~~~Ws~D~ 228 (459)
...+..+.|+|++. .++ +... ...|+.++. ..++.. .+.........+.|++++
T Consensus 219 ---------~~~i~~~~~~~~~~-~~~-~~~~-----------~~~i~i~~~---~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (289)
T cd00200 219 ---------ENGVNSVAFSPDGY-LLA-SGSE-----------DGTIRVWDL---RTGECVQTLSGHTNSVTSLAWSPDG 273 (289)
T ss_pred ---------CCceEEEEEcCCCc-EEE-EEcC-----------CCcEEEEEc---CCceeEEEccccCCcEEEEEECCCC
Confidence 22556789999955 333 2211 124556655 322333 233233346678899987
Q ss_pred cEEEEEe
Q 012630 229 LALVQET 235 (459)
Q Consensus 229 ~al~~~~ 235 (459)
..|+...
T Consensus 274 ~~l~~~~ 280 (289)
T cd00200 274 KRLASGS 280 (289)
T ss_pred CEEEEec
Confidence 6665543
No 80
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.33 E-value=1.1 Score=41.61 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=69.4
Q ss_pred hcceEEEcC-CCcee-ecC-CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc-eeeeeecccccc
Q 012630 74 TTQLVLATL-DGTVK-EFG-PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK-FVRQLCELPLVE 149 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~-~l~-~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~-~~~~lt~~p~~~ 149 (459)
.++|.++++ +++.. .+. ....+..+.|+|++++|+.... ...+.+||+..+ ....+..
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~----- 175 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-------------DGTIKLWDLRTGKCVATLTG----- 175 (289)
T ss_pred CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-------------CCcEEEEEccccccceeEec-----
Confidence 456777777 45433 333 2345679999999888766641 256889998633 3333321
Q ss_pred cccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEec-cccceeccceeCCCC
Q 012630 150 NIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILH-KLDLRFRGVSWCDDS 228 (459)
Q Consensus 150 ~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~-~~~~~~~~~~Ws~D~ 228 (459)
-...+..+.|+|++. .|+.... ...|.+++. ..++..... ........+.|++++
T Consensus 176 --------~~~~i~~~~~~~~~~-~l~~~~~------------~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 176 --------HTGEVNSVAFSPDGE-KLLSSSS------------DGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred --------CccccceEEECCCcC-EEEEecC------------CCcEEEEEC---CCCceecchhhcCCceEEEEEcCCC
Confidence 112456889999987 5554321 124555655 322333333 233356678999987
Q ss_pred cEEEEEe
Q 012630 229 LALVQET 235 (459)
Q Consensus 229 ~al~~~~ 235 (459)
..++...
T Consensus 232 ~~~~~~~ 238 (289)
T cd00200 232 YLLASGS 238 (289)
T ss_pred cEEEEEc
Confidence 6665543
No 81
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.12 E-value=14 Score=42.45 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=25.3
Q ss_pred hhcceEEE----cC-CCceeecCC-CceeeecccCCCCCeEEEEEe
Q 012630 73 TTTQLVLA----TL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSI 112 (459)
Q Consensus 73 ~~sqL~~v----~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~ 112 (459)
..+.|.++ +. +.+..-++. ...+...+||||+..|++++.
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTG 140 (928)
T ss_pred CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC
Confidence 34445555 33 233333443 445689999999999999973
No 82
>PTZ00420 coronin; Provisional
Probab=94.09 E-value=6.9 Score=42.14 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=39.4
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce-eeeeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF-VRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~-~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
...+..++|+|+|++|+++.. ....+.|||+..+. +..+.. ...+..+.|+||
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS------------~DgtIrIWDl~tg~~~~~i~~--------------~~~V~Slswspd 178 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSG------------FDSFVNIWDIENEKRAFQINM--------------PKKLSSLKWNIK 178 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEe------------CCCeEEEEECCCCcEEEEEec--------------CCcEEEEEECCC
Confidence 345679999999999876642 23678999987443 333321 124568999999
Q ss_pred CCceEE
Q 012630 171 RPSTLY 176 (459)
Q Consensus 171 g~~~l~ 176 (459)
|. .|+
T Consensus 179 G~-lLa 183 (568)
T PTZ00420 179 GN-LLS 183 (568)
T ss_pred CC-EEE
Confidence 98 554
No 83
>PTZ00421 coronin; Provisional
Probab=94.02 E-value=9.2 Score=40.53 Aligned_cols=115 Identities=12% Similarity=0.145 Sum_probs=61.0
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce-eeeeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF-VRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~-~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
...+..+.|+|++..++++.. ....+.|||+..+. +..+.. -...+..+.|+||
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs------------~DgtVrIWDl~tg~~~~~l~~-------------h~~~V~sla~spd 179 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAG------------ADMVVNVWDVERGKAVEVIKC-------------HSDQITSLEWNLD 179 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEe------------CCCEEEEEECCCCeEEEEEcC-------------CCCceEEEEEECC
Confidence 345678999999865555532 24678999987443 333321 1234678999999
Q ss_pred CCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCce-Eecc-ccceeccceeCCCCcEEEEEee--cCCccEEEEE
Q 012630 171 RPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPE-ILHK-LDLRFRGVSWCDDSLALVQETW--FKTTQTRTWL 246 (459)
Q Consensus 171 g~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~-~L~~-~~~~~~~~~Ws~D~~al~~~~~--~~~~~~~ly~ 246 (459)
|. .|+-. ..| ..|.++|. ..++.. .+.. .......+.|.+++..|+.... ..++..++|-
T Consensus 180 G~-lLatg-s~D-----------g~IrIwD~---rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 180 GS-LLCTT-SKD-----------KKLNIIDP---RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CC-EEEEe-cCC-----------CEEEEEEC---CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 88 55522 111 24566665 322322 2221 1112234688887544443221 1235555665
Q ss_pred E
Q 012630 247 I 247 (459)
Q Consensus 247 v 247 (459)
+
T Consensus 244 l 244 (493)
T PTZ00421 244 T 244 (493)
T ss_pred C
Confidence 4
No 84
>PTZ00420 coronin; Provisional
Probab=94.00 E-value=1 Score=48.32 Aligned_cols=122 Identities=12% Similarity=0.234 Sum_probs=65.6
Q ss_pred CceeeecccCCC-CCeEEEEEeccCcccccccCCCCcceEEEecC-Cce-eeeeecccccccccccccccccceeeeEEe
Q 012630 92 PAIYTAVEPSPD-QKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKF-VRQLCELPLVENIPIAYNSVREGMRLISWR 168 (459)
Q Consensus 92 ~~~~~~~~~SPD-G~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~-~~~lt~~p~~~~~P~~~~~~~~~~r~~~Ws 168 (459)
.+.+.+++|||+ +++|+-.+. ...+.|||+. ++. +..+.. +. ..+.+-...+..+.|+
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~-------------DgtIrIWDi~t~~~~~~~i~~-p~-----~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSE-------------DLTIRVWEIPHNDESVKEIKD-PQ-----CILKGHKKKISIIDWN 134 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeC-------------CCeEEEEECCCCCcccccccc-ce-----EEeecCCCcEEEEEEC
Confidence 445689999998 666655542 3678899975 322 211110 00 0011123456789999
Q ss_pred cCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCce-EeccccceeccceeCCCCcEEEEEeecCCccEEEEEE
Q 012630 169 ADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPE-ILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 169 pDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~-~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v 247 (459)
|++. .++.+...| ..|.+++. ..++.. .+. .......+.|++||..|+.... ++. +.++
T Consensus 135 P~g~-~iLaSgS~D-----------gtIrIWDl---~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~--D~~--IrIw 194 (568)
T PTZ00420 135 PMNY-YIMCSSGFD-----------SFVNIWDI---ENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV--GKH--MHII 194 (568)
T ss_pred CCCC-eEEEEEeCC-----------CeEEEEEC---CCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec--CCE--EEEE
Confidence 9987 443232222 24556665 322322 222 2334677899999877765431 333 4445
Q ss_pred cCCCC
Q 012630 248 SPGSK 252 (459)
Q Consensus 248 ~~~~~ 252 (459)
|+.++
T Consensus 195 D~Rsg 199 (568)
T PTZ00420 195 DPRKQ 199 (568)
T ss_pred ECCCC
Confidence 66543
No 85
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.97 E-value=0.41 Score=47.57 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=60.8
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
.+.+..+++||||++|+--+ ....+-+||+..+...... +++ ..=+-.+.|||||
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGs-------------GD~TvR~WD~~TeTp~~t~---------KgH---~~WVlcvawsPDg 169 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGS-------------GDTTVRLWDLDTETPLFTC---------KGH---KNWVLCVAWSPDG 169 (480)
T ss_pred CCcEEEEEecCCCceEEecC-------------CCceEEeeccCCCCcceee---------cCC---ccEEEEEEECCCc
Confidence 44567899999999996554 3466778887743322111 111 1122467999999
Q ss_pred CceEEEEEeccCCccccccCCCCeEEeccCCCCCCC-CceEeccccceeccceeCC-----CCcEEEEEeecCCccEEEE
Q 012630 172 PSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGE-EPEILHKLDLRFRGVSWCD-----DSLALVQETWFKTTQTRTW 245 (459)
Q Consensus 172 ~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~-~~~~L~~~~~~~~~~~Ws~-----D~~al~~~~~~~~~~~~ly 245 (459)
+ .|+ .| ...+.|..++. -+|+ .-+.|..-...+..++|.| +...|.+.. +++..+||
T Consensus 170 k-~iA------SG------~~dg~I~lwdp--ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s--kDg~vrIW 232 (480)
T KOG0271|consen 170 K-KIA------SG------SKDGSIRLWDP--KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS--KDGSVRIW 232 (480)
T ss_pred c-hhh------cc------ccCCeEEEecC--CCCCcccccccCcccceeEEeecccccCCCccceeccc--CCCCEEEE
Confidence 9 555 11 11234555553 1221 1223333333456677854 234444433 34555666
Q ss_pred EEc
Q 012630 246 LIS 248 (459)
Q Consensus 246 ~v~ 248 (459)
-+.
T Consensus 233 d~~ 235 (480)
T KOG0271|consen 233 DTK 235 (480)
T ss_pred Ecc
Confidence 554
No 86
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.87 E-value=0.71 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=18.5
Q ss_pred ecCCCceeeecccCCCCCeEEEEE
Q 012630 88 EFGPPAIYTAVEPSPDQKYILITS 111 (459)
Q Consensus 88 ~l~~~~~~~~~~~SPDG~~l~~~~ 111 (459)
++-....+..+++||||..|+.+-
T Consensus 51 ~~e~~~NI~~ialSp~g~lllavd 74 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGTLLLAVD 74 (893)
T ss_pred EeecCCceEEEEeCCCceEEEEEc
Confidence 444566678999999999887763
No 87
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.79 E-value=1.3 Score=44.69 Aligned_cols=117 Identities=9% Similarity=0.081 Sum_probs=58.5
Q ss_pred cceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCC
Q 012630 127 QKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEG 206 (459)
Q Consensus 127 ~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g 206 (459)
..++++|+.+..+........-......-...+.|...+..+|||+ +||....+ ++....+ ..-++|+++|+ ..
T Consensus 215 G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-~lyV~~~~-~~~~thk-~~~~~V~ViD~---~t 288 (352)
T TIGR02658 215 GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-RIYLLADQ-RAKWTHK-TASRFLFVVDA---KT 288 (352)
T ss_pred CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-EEEEEecC-Ccccccc-CCCCEEEEEEC---CC
Confidence 6677777665544433221110000000011222334478888887 55543321 1110000 11358999998 43
Q ss_pred CCceEeccccceeccceeCCCCc-EEEEEeecCCccEEEEEEcCCCC
Q 012630 207 EEPEILHKLDLRFRGVSWCDDSL-ALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 207 ~~~~~L~~~~~~~~~~~Ws~D~~-al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
++...-.....+..++..++|+. .|+...+ ....+.++|.+++
T Consensus 289 ~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~---~s~~VsViD~~t~ 332 (352)
T TIGR02658 289 GKRLRKIELGHEIDSINVSQDAKPLLYALST---GDKTLYIFDAETG 332 (352)
T ss_pred CeEEEEEeCCCceeeEEECCCCCeEEEEeCC---CCCcEEEEECcCC
Confidence 34444334566677889999987 4443332 1234888888764
No 88
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.72 E-value=7.9 Score=38.32 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=30.3
Q ss_pred CCeEEeccCCCCCCCCceEeccc-cceeccceeCCCCcEEEEEeecCCccEEEEEEcCC
Q 012630 193 RDIIYTQPAEPVEGEEPEILHKL-DLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPG 250 (459)
Q Consensus 193 ~~~l~~~~~~pf~g~~~~~L~~~-~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~ 250 (459)
...||.++. .| ....+... -..-.+++||||+..|++.. +...++|+++.+
T Consensus 142 ~G~lyr~~p---~g-~~~~l~~~~~~~~NGla~SpDg~tly~aD---T~~~~i~r~~~d 193 (307)
T COG3386 142 TGSLYRVDP---DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVAD---TPANRIHRYDLD 193 (307)
T ss_pred cceEEEEcC---CC-CEEEeecCcEEecCceEECCCCCEEEEEe---CCCCeEEEEecC
Confidence 358999985 55 44555444 33346799999985544432 223356666543
No 89
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=93.70 E-value=0.73 Score=47.63 Aligned_cols=129 Identities=21% Similarity=0.363 Sum_probs=69.6
Q ss_pred ceEEEcC-CCc----eeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 76 QLVLATL-DGT----VKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 76 qL~~v~~-~G~----~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
.|++..+ +++ ++.+-..+.++.+++||||+|||..- ..+.+-+||++.++++ ..+-
T Consensus 466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D-------------a~rkvv~yd~~s~~~~-~~~w----- 526 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD-------------ASRKVVLYDVASREVK-TNRW----- 526 (603)
T ss_pred eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec-------------cCCcEEEEEcccCcee-ccee-----
Confidence 3555555 333 23344567789999999999998873 3477888898876662 1111
Q ss_pred ccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc--cceeccceeCCCC
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL--DLRFRGVSWCDDS 228 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~--~~~~~~~~Ws~D~ 228 (459)
+|. ..-+..++||||.. .++ +...| ..-.||.++- | . +- ...+. ......+.|-.+.
T Consensus 527 ---~FH--takI~~~aWsP~n~-~vA-TGSlD---------t~Viiysv~k-P--~-~~-i~iknAH~~gVn~v~wlde~ 585 (603)
T KOG0318|consen 527 ---AFH--TAKINCVAWSPNNK-LVA-TGSLD---------TNVIIYSVKK-P--A-KH-IIIKNAHLGGVNSVAWLDES 585 (603)
T ss_pred ---eee--eeeEEEEEeCCCce-EEE-ecccc---------ceEEEEEccC-h--h-hh-eEeccccccCceeEEEecCc
Confidence 111 01234679999977 444 21111 1235666655 3 2 22 22221 2225667887654
Q ss_pred cEEEEEeecCCccEEEEEE
Q 012630 229 LALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 229 ~al~~~~~~~~~~~~ly~v 247 (459)
. +++.. .+-..++|.+
T Consensus 586 t-vvSsG--~Da~iK~W~v 601 (603)
T KOG0318|consen 586 T-VVSSG--QDANIKVWNV 601 (603)
T ss_pred e-EEecc--CcceeEEecc
Confidence 3 33322 1344566655
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.62 E-value=10 Score=44.14 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=40.3
Q ss_pred ecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc--cccccccccceeeeEEecCCCce
Q 012630 97 AVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI--PIAYNSVREGMRLISWRADRPST 174 (459)
Q Consensus 97 ~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~--P~~~~~~~~~~r~~~WspDg~~~ 174 (459)
++.++|++..|.++.. ...+|+++|..++.+..+......... -......-..+..+.++|||. +
T Consensus 687 gVa~dp~~g~LyVad~------------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~ 753 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMA------------GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-E 753 (1057)
T ss_pred EEEEecCCCeEEEEEC------------CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC-E
Confidence 6788997777765531 346788888876665544321000000 000112224677899999998 7
Q ss_pred EEEEE
Q 012630 175 LYWVE 179 (459)
Q Consensus 175 l~~~~ 179 (459)
||.+.
T Consensus 754 LYVAD 758 (1057)
T PLN02919 754 LYIAD 758 (1057)
T ss_pred EEEEE
Confidence 77554
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=1 Score=43.64 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=42.6
Q ss_pred eeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecccccee----ccceeCCCCcEEEEEeecC
Q 012630 163 RLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRF----RGVSWCDDSLALVQETWFK 238 (459)
Q Consensus 163 r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~----~~~~Ws~D~~al~~~~~~~ 238 (459)
..+.+||||+.+|+-+. .+.++++|| |+| ....-......- ....++||+.-++... +
T Consensus 191 ~~l~FS~dGK~iLlsT~-------------~s~~~~lDA--f~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs--~ 252 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTN-------------ASFIYLLDA--FDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS--D 252 (311)
T ss_pred eeeEEcCCCCEEEEEeC-------------CCcEEEEEc--cCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEec--C
Confidence 46799999997666332 347899999 787 533222221111 2457889987666554 3
Q ss_pred CccEEEEEE
Q 012630 239 TTQTRTWLI 247 (459)
Q Consensus 239 ~~~~~ly~v 247 (459)
++..++|.+
T Consensus 253 dg~i~vw~~ 261 (311)
T KOG1446|consen 253 DGTIHVWNL 261 (311)
T ss_pred CCcEEEEEc
Confidence 566777776
No 92
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=93.55 E-value=0.26 Score=48.67 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=39.2
Q ss_pred cccccCCChhhHHHHH--HHhhcceEEEcC-CCceeecC--CCceeeecccCCCCCeEEEEE
Q 012630 55 YTEGLLKDEFDEYLFE--HYTTTQLVLATL-DGTVKEFG--PPAIYTAVEPSPDQKYILITS 111 (459)
Q Consensus 55 t~~d~l~~~~D~~~f~--~~~~sqL~~v~~-~G~~~~l~--~~~~~~~~~~SPDG~~l~~~~ 111 (459)
++.+-|+...|+..+. -+..++|.+.|+ .|.-.+|- ..+.++.+.|||||.+|...+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 4555555555544332 346678888888 77666665 356678999999999986664
No 93
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=93.52 E-value=1.3 Score=42.47 Aligned_cols=122 Identities=14% Similarity=0.190 Sum_probs=64.3
Q ss_pred cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEe
Q 012630 89 FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWR 168 (459)
Q Consensus 89 l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~Ws 168 (459)
++..+....+.+||||..++.- +-..++++||++.++- +..+.. ...++++.++
T Consensus 189 ~gh~~~v~t~~vSpDGslcasG-------------gkdg~~~LwdL~~~k~--lysl~a-----------~~~v~sl~fs 242 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASG-------------GKDGEAMLWDLNEGKN--LYSLEA-----------FDIVNSLCFS 242 (315)
T ss_pred ccccccEEEEEECCCCCEEecC-------------CCCceEEEEEccCCce--eEeccC-----------CCeEeeEEec
Confidence 3445667899999999977542 2357889999874332 333221 1245688999
Q ss_pred cCCCceEEEEEeccCCccccccC---CCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEE
Q 012630 169 ADRPSTLYWVETQDGGAAKVEVS---PRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTW 245 (459)
Q Consensus 169 pDg~~~l~~~~~~d~g~~~~~~~---~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly 245 (459)
|... .|. .+-+.. ++++ ....|..+.. -+.| . -.-..+...-.++|++||+.|+... .++..++|
T Consensus 243 pnry-wL~--~at~~s---IkIwdl~~~~~v~~l~~-d~~g-~--s~~~~~~~clslaws~dG~tLf~g~--td~~irv~ 310 (315)
T KOG0279|consen 243 PNRY-WLC--AATATS---IKIWDLESKAVVEELKL-DGIG-P--SSKAGDPICLSLAWSADGQTLFAGY--TDNVIRVW 310 (315)
T ss_pred CCce-eEe--eccCCc---eEEEeccchhhhhhccc-cccc-c--ccccCCcEEEEEEEcCCCcEEEeee--cCCcEEEE
Confidence 9854 222 111111 1110 0011111111 0011 1 1111233345589999998888654 35667788
Q ss_pred EEc
Q 012630 246 LIS 248 (459)
Q Consensus 246 ~v~ 248 (459)
.+.
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 774
No 94
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=93.45 E-value=0.21 Score=48.62 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=41.6
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
+..+..+|||||++|+-++ .|..++-||.+......-|-. ...+...+++.|||+
T Consensus 92 agls~~~WSPdgrhiL~ts------------eF~lriTVWSL~t~~~~~~~~-------------pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTS------------EFDLRITVWSLNTQKGYLLPH-------------PKTNVKGYAFHPDGQ 146 (447)
T ss_pred CcceeeeECCCcceEeeee------------cceeEEEEEEeccceeEEecc-------------cccCceeEEECCCCc
Confidence 4467899999999999886 367889999887554443322 234667899999999
Q ss_pred c
Q 012630 173 S 173 (459)
Q Consensus 173 ~ 173 (459)
.
T Consensus 147 f 147 (447)
T KOG4497|consen 147 F 147 (447)
T ss_pred e
Confidence 3
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=93.44 E-value=7.4 Score=37.14 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=24.2
Q ss_pred cceEEEcC-CCcee-ecCCCceeeecccCCCCCeEEEEEe
Q 012630 75 TQLVLATL-DGTVK-EFGPPAIYTAVEPSPDQKYILITSI 112 (459)
Q Consensus 75 sqL~~v~~-~G~~~-~l~~~~~~~~~~~SPDG~~l~~~~~ 112 (459)
-.+-++|. .|+.. ++-..+....+.|||||+|+++...
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k 126 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK 126 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC
Confidence 34455555 55433 3333444467999999999999953
No 96
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=93.26 E-value=0.38 Score=50.71 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=73.0
Q ss_pred ceeEe--cCCcEEEEE---------eeCCCCCCCCCCCCCCCCeEeecCCCcccccccccccCCChhhHHHHHHHhhcce
Q 012630 9 SFVWV--NSSVLLVYT---------IPLSRGDSPKKSLVPFGPKIQSNEQQNVIQNRYTEGLLKDEFDEYLFEHYTTTQL 77 (459)
Q Consensus 9 ~~~w~--d~~~l~~~~---------~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~rt~~d~l~~~~D~~~f~~~~~sqL 77 (459)
++.|- |.++|++.+ ++++... .....| .-.+..+. .+.-.-| +..|-.+----+. |..+ |
T Consensus 632 Dl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--e~~~tP-e~~lt~h~-eKI~slR-fHPLAadvLa~as--yd~T--i 702 (1012)
T KOG1445|consen 632 DLHWDPFDDERLAVATDDGQINLWRLTANGLP--ENEMTP-EKILTIHG-EKITSLR-FHPLAADVLAVAS--YDST--I 702 (1012)
T ss_pred ecccCCCChHHeeecccCceEEEEEeccCCCC--cccCCc-ceeeeccc-ceEEEEE-ecchhhhHhhhhh--ccce--e
Confidence 79999 999998863 3333332 221221 12333333 4443344 4444222211111 4444 4
Q ss_pred EEEcC-CC--ceeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc-cc
Q 012630 78 VLATL-DG--TVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI-PI 153 (459)
Q Consensus 78 ~~v~~-~G--~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~-P~ 153 (459)
-++|+ ++ ..+..+..+.+-+++|||||++||-+... ..+.|+.-..++ .|+.|+. |+
T Consensus 703 ~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-------------g~~rVy~Prs~e------~pv~Eg~gpv 763 (1012)
T KOG1445|consen 703 ELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-------------GTLRVYEPRSRE------QPVYEGKGPV 763 (1012)
T ss_pred eeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC-------------ceEEEeCCCCCC------CccccCCCCc
Confidence 45566 55 34456667777899999999999988632 556777643222 2222221 32
Q ss_pred cccccccceeeeEEecCCCceEEEE
Q 012630 154 AYNSVREGMRLISWRADRPSTLYWV 178 (459)
Q Consensus 154 ~~~~~~~~~r~~~WspDg~~~l~~~ 178 (459)
+ .-...+.|.=||. .|+.+
T Consensus 764 g-----tRgARi~wacdgr-~viv~ 782 (1012)
T KOG1445|consen 764 G-----TRGARILWACDGR-IVIVV 782 (1012)
T ss_pred c-----CcceeEEEEecCc-EEEEe
Confidence 2 2233578999988 55544
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=1.3 Score=46.31 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=75.7
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
...+-.+.||+||+++|---+ ...+.|||... .....++. -..-++.+.|+|=
T Consensus 301 ~qeVCgLkws~d~~~lASGgn-------------DN~~~Iwd~~~~~p~~~~~~-------------H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGN-------------DNVVFIWDGLSPEPKFTFTE-------------HTAAVKALAWCPW 354 (484)
T ss_pred cceeeeeEECCCCCeeccCCC-------------ccceEeccCCCccccEEEec-------------cceeeeEeeeCCC
Confidence 445569999999999865532 47789998732 22233333 2446678999999
Q ss_pred CCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEEEEcC
Q 012630 171 RPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 171 g~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
.+..|+- +|+- .-..|..++. ++| +......+...+..+.|++...-|+....+......||.++.
T Consensus 355 q~~lLAs-----GGGs-----~D~~i~fwn~--~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 355 QSGLLAT-----GGGS-----ADRCIKFWNT--NTG-ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ccCceEE-----cCCC-----cccEEEEEEc--CCC-cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 8866662 2221 1124555555 233 655555566678889999986555554433455778998864
No 98
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=93.24 E-value=0.34 Score=47.28 Aligned_cols=95 Identities=17% Similarity=0.312 Sum_probs=63.1
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
....++||+|..|++-... ..|.-+|+||+.-.++..+-.. ...+|.|.|-|..+
T Consensus 320 g~g~lafs~Ds~y~aTrnd-----------~~PnalW~Wdlq~l~l~avLiQ-------------k~piraf~WdP~~p- 374 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRND-----------KYPNALWLWDLQNLKLHAVLIQ-------------KHPIRAFEWDPGRP- 374 (447)
T ss_pred ccceeeecCCceEEeeecC-----------CCCceEEEEechhhhhhhhhhh-------------ccceeEEEeCCCCc-
Confidence 3468999999999876632 3578899999885554433221 34678999999999
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCC
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDS 228 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~ 228 (459)
.|+..- + ..+||.+.. .|........-+..+..+.|.-+|
T Consensus 375 rL~vct---g---------~srLY~W~p---sg~~~V~vP~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 375 RLVVCT---G---------KSRLYFWAP---SGPRVVGVPKKGFNIQKLQWLQPG 414 (447)
T ss_pred eEEEEc---C---------CceEEEEcC---CCceEEecCCCCceeeeEEecCCC
Confidence 565431 1 346888866 552233334445667778998766
No 99
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.14 E-value=2.1 Score=44.90 Aligned_cols=131 Identities=20% Similarity=0.288 Sum_probs=79.6
Q ss_pred hcceEEEcC--CCc-eeec-CCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeeccccc
Q 012630 74 TTQLVLATL--DGT-VKEF-GPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCELPLV 148 (459)
Q Consensus 74 ~sqL~~v~~--~G~-~~~l-~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~~p~~ 148 (459)
..+|.+.|+ .|. .+.| +....+..+.|+|+|+.|+..+ +...+.|||+.+ ..++.|...
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-------------~D~tvriWd~~~~~~~~~l~~h--- 287 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-------------DDGTVRIWDVRTGECVRKLKGH--- 287 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec-------------CCCcEEEEeccCCeEEEeeecc---
Confidence 346666666 333 3344 3456668999999996655553 457899999885 444444332
Q ss_pred ccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCc---eEeccccc--eeccce
Q 012630 149 ENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEP---EILHKLDL--RFRGVS 223 (459)
Q Consensus 149 ~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~---~~L~~~~~--~~~~~~ 223 (459)
..++..+..++||. .|+-. . ....|.++|. ..+.- +.+..... ....+.
T Consensus 288 ----------s~~is~~~f~~d~~-~l~s~-s-----------~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 288 ----------SDGISGLAFSPDGN-LLVSA-S-----------YDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred ----------CCceEEEEECCCCC-EEEEc-C-----------CCccEEEEEC---CCCceeeeecccCCCCCCceeEEE
Confidence 33566788999988 44421 1 1234666666 44341 23333222 356678
Q ss_pred eCCCCcEEEEEeecCCccEEEEEEc
Q 012630 224 WCDDSLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 224 Ws~D~~al~~~~~~~~~~~~ly~v~ 248 (459)
|++++..|+... .++..++|-+.
T Consensus 342 fsp~~~~ll~~~--~d~~~~~w~l~ 364 (456)
T KOG0266|consen 342 FSPNGKYLLSAS--LDRTLKLWDLR 364 (456)
T ss_pred ECCCCcEEEEec--CCCeEEEEEcc
Confidence 899987777655 35667788775
No 100
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=92.60 E-value=0.19 Score=51.86 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=17.0
Q ss_pred eeeecccCCCCCeEEEEEec
Q 012630 94 IYTAVEPSPDQKYILITSID 113 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~ 113 (459)
.+.++.+||||++||.++.+
T Consensus 292 ~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred cccceeEcCCCceEEEEecC
Confidence 45789999999999999743
No 101
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.59 E-value=1.1 Score=42.19 Aligned_cols=156 Identities=12% Similarity=0.116 Sum_probs=88.7
Q ss_pred cccCCChhhHHHHHHHhhcceEEEcC-CC-ceeecC-CC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEE
Q 012630 57 EGLLKDEFDEYLFEHYTTTQLVLATL-DG-TVKEFG-PP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVW 132 (459)
Q Consensus 57 ~d~l~~~~D~~~f~~~~~sqL~~v~~-~G-~~~~l~-~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~ 132 (459)
..++-.++-..+|.=...++|++.|+ .. -..++. +. ..+.++..-|||++|+...++ ...|+|
T Consensus 128 n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-------------G~cyvW 194 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-------------GNCYVW 194 (311)
T ss_pred ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-------------ccEEEE
Confidence 44555555566666667788899998 33 233444 32 345799999999999888654 667999
Q ss_pred ecCCce-eeeeecccccccccc-cccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCce
Q 012630 133 TADGKF-VRQLCELPLVENIPI-AYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPE 210 (459)
Q Consensus 133 d~~g~~-~~~lt~~p~~~~~P~-~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~ 210 (459)
++-+.. ..+| .|+ .|.+-....-.-..|||++ .|+-..+ |.. -.||..+- -|.+ ..
T Consensus 195 ~l~~~~~~s~l--------~P~~k~~ah~~~il~C~lSPd~k-~lat~ss----dkt------v~iwn~~~-~~kl--e~ 252 (311)
T KOG0315|consen 195 RLLNHQTASEL--------EPVHKFQAHNGHILRCLLSPDVK-YLATCSS----DKT------VKIWNTDD-FFKL--EL 252 (311)
T ss_pred EccCCCccccc--------eEhhheecccceEEEEEECCCCc-EEEeecC----Cce------EEEEecCC-ceee--EE
Confidence 865422 2222 121 1223334455678999999 5553321 211 12333333 1122 23
Q ss_pred EeccccceeccceeCCCCcEEEEEeecCCccEEEEEEcC
Q 012630 211 ILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 211 ~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
.|.....-..+-++|.||..|+.... +...++|-+..
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTass--d~~~rlW~~~~ 289 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASS--DHTARLWDLSA 289 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCC--CCceeeccccc
Confidence 33333322445667889988886552 45677887654
No 102
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=92.43 E-value=0.15 Score=50.74 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEE--cCCc
Q 012630 397 TLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWA--YPGE 441 (459)
Q Consensus 397 ~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~--Yp~e 441 (459)
.++...|+|++.+|..|+|||++|.+- ++|+|+||.+ |...
T Consensus 53 ~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~ 95 (320)
T PF05448_consen 53 GVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGR 95 (320)
T ss_dssp SEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT--
T ss_pred CEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCC
Confidence 467888999999999999999999852 2489999987 5544
No 103
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=92.40 E-value=1.4 Score=49.13 Aligned_cols=86 Identities=10% Similarity=0.078 Sum_probs=57.3
Q ss_pred CeEEeccCCCCCCCCceEe-ccccceeccceeCCCCcEEEEEeecCC--ccEEEEEEcCCCCCCCceEEeecCCCCccCC
Q 012630 194 DIIYTQPAEPVEGEEPEIL-HKLDLRFRGVSWCDDSLALVQETWFKT--TQTRTWLISPGSKDTAPLILFDRSSEDVYSD 270 (459)
Q Consensus 194 ~~l~~~~~~pf~g~~~~~L-~~~~~~~~~~~Ws~D~~al~~~~~~~~--~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~ 270 (459)
..|..+|. +|..++.+ +......-.+.|||||.-|.|...++. +...||+-++.+.+..+..| +++.
T Consensus 329 ~~L~~~D~---dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl---~ve~---- 398 (912)
T TIGR02171 329 GNLAYIDY---TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL---PVEN---- 398 (912)
T ss_pred CeEEEEec---CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe---eccc----
Confidence 37889999 88788877 666666777999999977766322344 77889999987654433333 2221
Q ss_pred CCCCCeeeCCCCCEEEEEe
Q 012630 271 PGLPMMRKSSTGTRVIAKI 289 (459)
Q Consensus 271 pg~~~~~~~~dg~~v~~~~ 289 (459)
..=|.++..++|..+|...
T Consensus 399 aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 399 AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred ccccceEecCCCCeEEEEE
Confidence 2234566788888775544
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=92.21 E-value=1 Score=49.42 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=40.2
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
.++..++|+|||..+|+...+ ..+-+++..|.+....-+.. .........+|||.|+
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d-------------~~Vkvy~r~~we~~f~Lr~~----------~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVD-------------NTVKVYSRKGWELQFKLRDK----------LSSSKFSDLQWSPNGK 245 (933)
T ss_pred ceeeeeeecCCCCeEEeeccC-------------CeEEEEccCCceeheeeccc----------ccccceEEEEEcCCCc
Confidence 345689999998888888644 55677777776654333321 1223356789999999
Q ss_pred ceEE
Q 012630 173 STLY 176 (459)
Q Consensus 173 ~~l~ 176 (459)
.|+
T Consensus 246 -YiA 248 (933)
T KOG1274|consen 246 -YIA 248 (933)
T ss_pred -EEe
Confidence 555
No 105
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=92.20 E-value=2.3 Score=41.64 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=89.1
Q ss_pred ceeEe-cCCcEEEEE---------eeCCCCC--CCCCCCCCCCCeEeecCCCcccccccccccCCCh-hhHHHHHHH-hh
Q 012630 9 SFVWV-NSSVLLVYT---------IPLSRGD--SPKKSLVPFGPKIQSNEQQNVIQNRYTEGLLKDE-FDEYLFEHY-TT 74 (459)
Q Consensus 9 ~~~w~-d~~~l~~~~---------~~~~~~~--~~~~~~~~~~p~i~~~~~~~~~~~rt~~d~l~~~-~D~~~f~~~-~~ 74 (459)
+..|| ||+-||... +|..-.- ++.....+.-+.+.--+ +..++-+..-.+|+.. .+--+|.-- +.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e-g~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE-GETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc-CCEEEEEEeeeccccCCCccceeeecccc
Confidence 57899 999998863 3322211 11122223334444444 4444544433333322 112222211 11
Q ss_pred cceEEEcC-CCceeecCC-------CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC--Cceeeeeec
Q 012630 75 TQLVLATL-DGTVKEFGP-------PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD--GKFVRQLCE 144 (459)
Q Consensus 75 sqL~~v~~-~G~~~~l~~-------~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~--g~~~~~lt~ 144 (459)
.-|.++|. +|+.|---. -....+++|||||.+|..- +.+-|.|+|.. |..-..-+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--------------ykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--------------YKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--------------ccceEEEeeccCCCCCCcchhh
Confidence 23566677 787763221 1122589999999998333 45667777752 322111111
Q ss_pred ccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-ccceeccce
Q 012630 145 LPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRFRGVS 223 (459)
Q Consensus 145 ~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~~~~~ 223 (459)
..... .+...=..-++.+|-...+++|-.. .-+--||..+- .+|-.|.. -...+..+.
T Consensus 199 ~~~~k------~gq~giisc~a~sP~~~~~~a~gsY----------~q~~giy~~~~-----~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 199 VTKGK------FGQKGIISCFAFSPMDSKTLAVGSY----------GQRVGIYNDDG-----RRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred hhccc------ccccceeeeeeccCCCCcceeeecc----------cceeeeEecCC-----CCceeeecccCCCeeeEE
Confidence 00000 0001111345666665544443211 01223554433 35555543 344467789
Q ss_pred eCCCCcEEEEEe
Q 012630 224 WCDDSLALVQET 235 (459)
Q Consensus 224 Ws~D~~al~~~~ 235 (459)
|.+||..|+...
T Consensus 258 ~~edGn~lfsGa 269 (406)
T KOG2919|consen 258 WCEDGNKLFSGA 269 (406)
T ss_pred eccCcCeecccc
Confidence 999986665443
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.07 E-value=0.67 Score=51.53 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=59.7
Q ss_pred CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce-eeeeecccccccccccccccccceeeeEEec
Q 012630 91 PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF-VRQLCELPLVENIPIAYNSVREGMRLISWRA 169 (459)
Q Consensus 91 ~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~-~~~lt~~p~~~~~P~~~~~~~~~~r~~~Wsp 169 (459)
....+.++.||||+++|+-.+.. ..+.||+....+ ++.+-. . ..-+.++.|-|
T Consensus 128 H~~DV~Dv~Wsp~~~~lvS~s~D-------------nsViiwn~~tF~~~~vl~~---H----------~s~VKGvs~DP 181 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSLLVSVSLD-------------NSVIIWNAKTFELLKVLRG---H----------QSLVKGVSWDP 181 (942)
T ss_pred CCCccceeccCCCccEEEEeccc-------------ceEEEEccccceeeeeeec---c----------cccccceEECC
Confidence 45667899999999999877643 667888865432 222211 1 12344779999
Q ss_pred CCCceEEEEEeccCCccccccCCC-C--eEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEE
Q 012630 170 DRPSTLYWVETQDGGAAKVEVSPR-D--IIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQE 234 (459)
Q Consensus 170 Dg~~~l~~~~~~d~g~~~~~~~~~-~--~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~ 234 (459)
-|+ .++-. .+|...+++.. + ....+.. ||.- ......+..+.|||||..|+.-
T Consensus 182 ~Gk-y~ASq----sdDrtikvwrt~dw~i~k~It~-pf~~------~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 182 IGK-YFASQ----SDDRTLKVWRTSDWGIEKSITK-PFEE------SPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ccC-eeeee----cCCceEEEEEcccceeeEeecc-chhh------CCCcceeeecccCCCcCeecch
Confidence 999 44422 22322222211 1 1222223 4431 0123356779999999777654
No 107
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.01 E-value=3.5 Score=47.89 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=66.7
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecc-cc-cccc--c-----ccccccccceeeeE
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCEL-PL-VENI--P-----IAYNSVREGMRLIS 166 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~-p~-~~~~--P-----~~~~~~~~~~r~~~ 166 (459)
.++.+||||++|++.. . ....|.+||++++....++.. +. .... . .+....-..+..+.
T Consensus 743 ~GIavspdG~~LYVAD-s-----------~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 743 SGISLSPDLKELYIAD-S-----------ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred cEEEEeCCCCEEEEEE-C-----------CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 3688999999886663 1 346788999875544433311 00 0000 0 00112234567889
Q ss_pred EecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecccc--------------ceeccceeCCCCcEEE
Q 012630 167 WRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLD--------------LRFRGVSWCDDSLALV 232 (459)
Q Consensus 167 WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~--------------~~~~~~~Ws~D~~al~ 232 (459)
+++||. ||.+. .+ ...|.+++. +++....+.... ..-.+++.++||.+++
T Consensus 811 vd~dG~--LYVAD---s~--------N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 811 CAKDGQ--IYVAD---SY--------NHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred EeCCCc--EEEEE---CC--------CCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 999986 44332 22 234555555 333333332211 1224567788887676
Q ss_pred EEeecCCccEEEEEEcCCCCC
Q 012630 233 QETWFKTTQTRTWLISPGSKD 253 (459)
Q Consensus 233 ~~~~~~~~~~~ly~v~~~~~~ 253 (459)
.+. .+..|.++++.++.
T Consensus 875 aDt----~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 875 ADT----NNSLIRYLDLNKGE 891 (1057)
T ss_pred EEC----CCCEEEEEECCCCc
Confidence 654 22357777776543
No 108
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=91.99 E-value=0.44 Score=47.72 Aligned_cols=58 Identities=12% Similarity=0.270 Sum_probs=37.2
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
..+..++|+|+|++|+.-+.. .++-+|+..+-.-..|-+ +-...+|.+.||++|.
T Consensus 97 c~V~~v~WtPeGRRLltgs~S-------------GEFtLWNg~~fnFEtilQ------------aHDs~Vr~m~ws~~g~ 151 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQS-------------GEFTLWNGTSFNFETILQ------------AHDSPVRTMKWSHNGT 151 (464)
T ss_pred cceeeEEEcCCCceeEeeccc-------------ccEEEecCceeeHHHHhh------------hhcccceeEEEccCCC
Confidence 345689999999999888744 455677754322111111 1123567899999999
Q ss_pred ceEE
Q 012630 173 STLY 176 (459)
Q Consensus 173 ~~l~ 176 (459)
+++
T Consensus 152 -wmi 154 (464)
T KOG0284|consen 152 -WMI 154 (464)
T ss_pred -EEE
Confidence 444
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=91.34 E-value=0.68 Score=50.32 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=55.5
Q ss_pred HhhcceEEEcC-CCc-eeecC-CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeecccc
Q 012630 72 YTTTQLVLATL-DGT-VKEFG-PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPL 147 (459)
Q Consensus 72 ~~~sqL~~v~~-~G~-~~~l~-~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~ 147 (459)
...-+|.++|+ +-+ +|.|- ..+-+.++.+|||||+|+..++. ..|.+||+- |..+-.+-
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD-------------~tIr~wDlpt~~lID~~~---- 615 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD-------------STIRTWDLPTGTLIDGLL---- 615 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC-------------CcEEEEeccCcceeeeEe----
Confidence 34567888897 554 44544 56677899999999999888753 678899964 54443221
Q ss_pred cccccccccccccceeeeEEecCCCceEEEEEe
Q 012630 148 VENIPIAYNSVREGMRLISWRADRPSTLYWVET 180 (459)
Q Consensus 148 ~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~ 180 (459)
+....-++++||.|+ .|+-+..
T Consensus 616 ----------vd~~~~sls~SPngD-~LAT~Hv 637 (910)
T KOG1539|consen 616 ----------VDSPCTSLSFSPNGD-FLATVHV 637 (910)
T ss_pred ----------cCCcceeeEECCCCC-EEEEEEe
Confidence 112234789999999 7776543
No 110
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.33 E-value=2.1 Score=44.85 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEec-CC-ceeeeeecccccccccccccccccceeeeEEec
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTA-DG-KFVRQLCELPLVENIPIAYNSVREGMRLISWRA 169 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~-~g-~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~Wsp 169 (459)
...+.++.|||||++|+-.+. ...+.|||+ +. ..++.+... ...+-.+.++|
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~-------------D~tiriwd~~~~~~~~~~l~gH-------------~~~v~~~~f~p 256 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSD-------------DKTLRIWDLKDDGRNLKTLKGH-------------STYVTSVAFSP 256 (456)
T ss_pred ccceeeeEECCCCcEEEEecC-------------CceEEEeeccCCCeEEEEecCC-------------CCceEEEEecC
Confidence 345689999999998766653 377899998 43 344544322 22445889999
Q ss_pred CCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-ccceeccceeCCCCcEEEEEeecCCccEEEEEE
Q 012630 170 DRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 170 Dg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v 247 (459)
+|. .|+-.. .| ..|++++. .+++.....+ -......+..++|+..|+.... ++..++|-+
T Consensus 257 ~g~-~i~Sgs----~D--------~tvriWd~---~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--d~~i~vwd~ 317 (456)
T KOG0266|consen 257 DGN-LLVSGS----DD--------GTVRIWDV---RTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--DGTIRVWDL 317 (456)
T ss_pred CCC-EEEEec----CC--------CcEEEEec---cCCeEEEeeeccCCceEEEEECCCCCEEEEcCC--CccEEEEEC
Confidence 994 665331 11 24556665 3335554443 3446777889999877776542 455555544
No 111
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=91.16 E-value=5.3 Score=39.71 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=69.0
Q ss_pred ecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeecccccccccccccccccceeee
Q 012630 88 EFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLI 165 (459)
Q Consensus 88 ~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~ 165 (459)
.++. ...+....||-||.+||-- .+..++.||..+ |++...+. .+. ...-.+
T Consensus 101 eltgHKDSVt~~~FshdgtlLATG-------------dmsG~v~v~~~stg~~~~~~~-~e~------------~dieWl 154 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATG-------------DMSGKVLVFKVSTGGEQWKLD-QEV------------EDIEWL 154 (399)
T ss_pred EecCCCCceEEEEEccCceEEEec-------------CCCccEEEEEcccCceEEEee-ccc------------CceEEE
Confidence 4443 5677899999999998544 356889999876 44444443 222 234478
Q ss_pred EEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEE
Q 012630 166 SWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTW 245 (459)
Q Consensus 166 ~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly 245 (459)
.|.|-+. +|+ +...| ..||++.+ |-.+ ..+.+..-..+..--.+.|||..++.... +.. |.
T Consensus 155 ~WHp~a~-ill-AG~~D-----------GsvWmw~i-p~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~--dgt--i~ 215 (399)
T KOG0296|consen 155 KWHPRAH-ILL-AGSTD-----------GSVWMWQI-PSQA-LCKVMSGHNSPCTCGEFIPDGKRILTGYD--DGT--II 215 (399)
T ss_pred Eeccccc-EEE-eecCC-----------CcEEEEEC-CCcc-eeeEecCCCCCcccccccCCCceEEEEec--Cce--EE
Confidence 9999654 443 33222 36888877 4222 33333332333444567788866654432 232 44
Q ss_pred EEcCCCC
Q 012630 246 LISPGSK 252 (459)
Q Consensus 246 ~v~~~~~ 252 (459)
+.++.++
T Consensus 216 ~Wn~ktg 222 (399)
T KOG0296|consen 216 VWNPKTG 222 (399)
T ss_pred EEecCCC
Confidence 4466654
No 112
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.08 E-value=0.57 Score=47.00 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=50.7
Q ss_pred hhcceEEEcC-CCceee-cCCC-----ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce-eeeeec
Q 012630 73 TTTQLVLATL-DGTVKE-FGPP-----AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF-VRQLCE 144 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~~-l~~~-----~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~-~~~lt~ 144 (459)
..--|-++|+ +-++++ +.+. ...+.+.|||||.|+|.-+. ...+|||++.++. .+.+..
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-------------dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-------------DGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-------------CCcEEEEEccCceEEEEecc
Confidence 3344556777 555554 3332 22457899999999988763 4789999987554 454433
Q ss_pred ccccccccccccccccceeeeEEecCCCceE
Q 012630 145 LPLVENIPIAYNSVREGMRLISWRADRPSTL 175 (459)
Q Consensus 145 ~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l 175 (459)
. . ...++-.++|.|-|...|
T Consensus 428 s-~----------s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 428 S-T----------SNAAITSLSWNPSGSGLL 447 (459)
T ss_pred C-C----------CCcceEEEEEcCCCchhh
Confidence 2 1 122566889999988443
No 113
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.07 E-value=15 Score=35.20 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=67.6
Q ss_pred cceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCC
Q 012630 160 EGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKT 239 (459)
Q Consensus 160 ~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~ 239 (459)
.....+.+|+||. .++++...++ +..||+... .+ ....+. ....+..+.|++++.++.... ..
T Consensus 24 ~~~~s~AvS~dg~-~~A~v~~~~~---------~~~L~~~~~---~~-~~~~~~-~g~~l~~PS~d~~g~~W~v~~--~~ 86 (253)
T PF10647_consen 24 YDVTSPAVSPDGS-RVAAVSEGDG---------GRSLYVGPA---GG-PVRPVL-TGGSLTRPSWDPDGWVWTVDD--GS 86 (253)
T ss_pred ccccceEECCCCC-eEEEEEEcCC---------CCEEEEEcC---CC-cceeec-cCCccccccccCCCCEEEEEc--CC
Confidence 3567889999999 7777762111 457888877 54 666654 333778899999987766654 23
Q ss_pred ccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCC--eeeCCCCCEEEEEeeeccCCCcEEEEEc
Q 012630 240 TQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPM--MRKSSTGTRVIAKIKKENDQGTYILLNG 303 (459)
Q Consensus 240 ~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~--~~~~~dg~~v~~~~~~~~~~~~~ly~~~ 303 (459)
...++++ +..++...+..+ +.... ...+ .+.++||..+++.... .++..+|+.+
T Consensus 87 ~~~~~~~-~~~~g~~~~~~v-~~~~~------~~~I~~l~vSpDG~RvA~v~~~--~~~~~v~va~ 142 (253)
T PF10647_consen 87 GGVRVVR-DSASGTGEPVEV-DWPGL------RGRITALRVSPDGTRVAVVVED--GGGGRVYVAG 142 (253)
T ss_pred CceEEEE-ecCCCcceeEEe-ccccc------CCceEEEEECCCCcEEEEEEec--CCCCeEEEEE
Confidence 3444444 222233322222 11100 0023 3569999998776543 2234666665
No 114
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=90.97 E-value=1.3 Score=44.63 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=71.2
Q ss_pred EcC-CCceeecCCC--ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccccccc
Q 012630 80 ATL-DGTVKEFGPP--AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYN 156 (459)
Q Consensus 80 v~~-~G~~~~l~~~--~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~ 156 (459)
+|+ +|.-..+.++ ..+.++.|||.|-.||--+. ....-|||+.+... +...|...+
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~-------------Dnt~kVWDLR~r~~--ly~ipAH~n------ 388 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS-------------DNTCKVWDLRMRSE--LYTIPAHSN------ 388 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCC-------------CCcEEEeeeccccc--ceecccccc------
Confidence 355 6655544443 34579999999998877653 36678999875433 333332211
Q ss_pred ccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEee
Q 012630 157 SVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETW 236 (459)
Q Consensus 157 ~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~ 236 (459)
-+..+.++|++...|+-.. .|.. -.||.-. +..-.+.|..-+.....+..++|+.+|+...+
T Consensus 389 ----lVS~Vk~~p~~g~fL~Tas----yD~t------~kiWs~~----~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 389 ----LVSQVKYSPQEGYFLVTAS----YDNT------VKIWSTR----TWSPLKSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred ----hhhheEecccCCeEEEEcc----cCcc------eeeecCC----CcccchhhcCCccceEEEEeccCCceEEEecc
Confidence 2335688886664555321 1211 1222211 12233334444555666788999988887764
Q ss_pred cCCccEEEEE
Q 012630 237 FKTTQTRTWL 246 (459)
Q Consensus 237 ~~~~~~~ly~ 246 (459)
+|..++|.
T Consensus 451 --DRT~KLW~ 458 (459)
T KOG0272|consen 451 --DRTIKLWR 458 (459)
T ss_pred --Cceeeecc
Confidence 46566663
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=2.2 Score=44.65 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=30.6
Q ss_pred ceEEEcC-CCceeecCCC--ceeeecccCCCCCeEEEEEec
Q 012630 76 QLVLATL-DGTVKEFGPP--AIYTAVEPSPDQKYILITSID 113 (459)
Q Consensus 76 qL~~v~~-~G~~~~l~~~--~~~~~~~~SPDG~~l~~~~~~ 113 (459)
-+|+.+. +|++.+|.+- ..+.++.|||||++|++-...
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC
Confidence 5677777 8888887764 667899999999999988643
No 116
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.65 E-value=2.1 Score=44.71 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=50.5
Q ss_pred hhcceEEEcC-CCceee-cCC---Cc-eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccc
Q 012630 73 TTTQLVLATL-DGTVKE-FGP---PA-IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELP 146 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~~-l~~---~~-~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p 146 (459)
-..||.+.|+ +|.... |.. +. .-.-++||-|+||+|-... ..|-|++... .-
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--------------~sisIyEtps--------f~ 337 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--------------NSISIYETPS--------FM 337 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--------------ceEEEEecCc--------ee
Confidence 3478999999 886553 322 22 2258999999999977653 2233443221 00
Q ss_pred ccccccccccccccceeeeEEecCCCceEEEEEec
Q 012630 147 LVENIPIAYNSVREGMRLISWRADRPSTLYWVETQ 181 (459)
Q Consensus 147 ~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~ 181 (459)
+-|..++. ..|+|+|+|||-+.-..||++..
T Consensus 338 lld~Kslk----i~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 338 LLDKKSLK----ISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred eecccccC----CccccCcccCCCcceEEEEcccc
Confidence 11111211 35889999999998666787643
No 117
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.62 E-value=0.48 Score=45.38 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEc
Q 012630 397 TLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAY 438 (459)
Q Consensus 397 ~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Y 438 (459)
.++.=.++|++.+|-+|.|||++|.- + ++|+|+||-+.
T Consensus 53 ~ve~ydvTf~g~~g~rI~gwlvlP~~---~-~~~~P~vV~fh 90 (321)
T COG3458 53 RVEVYDVTFTGYGGARIKGWLVLPRH---E-KGKLPAVVQFH 90 (321)
T ss_pred ceEEEEEEEeccCCceEEEEEEeecc---c-CCccceEEEEe
Confidence 35777799999999999999999964 1 24899999753
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=90.51 E-value=4.4 Score=39.59 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=56.7
Q ss_pred eeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCce
Q 012630 95 YTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPST 174 (459)
Q Consensus 95 ~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~ 174 (459)
....+||+-|.+||+-... ..+.|||..... +++.-.+--.| +.++.||+||+ .
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-------------G~vvI~D~~T~~---iar~lsaH~~p---------i~sl~WS~dgr-~ 79 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-------------GRVVIYDFDTFR---IARMLSAHVRP---------ITSLCWSRDGR-K 79 (405)
T ss_pred cceEEeccCcceeeeeccC-------------CcEEEEEccccc---hhhhhhccccc---------eeEEEecCCCC-E
Confidence 4578999999999998743 678899976433 33322222223 34889999999 5
Q ss_pred EEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCC-C-CcEEEE
Q 012630 175 LYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCD-D-SLALVQ 233 (459)
Q Consensus 175 l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~-D-~~al~~ 233 (459)
|.-.. . | ..+-.+|. ..| .+-.-...+....+..|.| + ..+++.
T Consensus 80 LltsS-~---D--------~si~lwDl--~~g-s~l~rirf~spv~~~q~hp~k~n~~va~ 125 (405)
T KOG1273|consen 80 LLTSS-R---D--------WSIKLWDL--LKG-SPLKRIRFDSPVWGAQWHPRKRNKCVAT 125 (405)
T ss_pred eeeec-C---C--------ceeEEEec--cCC-CceeEEEccCccceeeeccccCCeEEEE
Confidence 55321 1 1 24555665 133 3332222344455567776 3 445544
No 119
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.23 E-value=3 Score=43.18 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=82.0
Q ss_pred HHhhcceEEEcCCCceeec--CCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccc
Q 012630 71 HYTTTQLVLATLDGTVKEF--GPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLV 148 (459)
Q Consensus 71 ~~~~sqL~~v~~~G~~~~l--~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~ 148 (459)
||..+.|++.++++.-.++ ...+-+.++.|+|+++..++++-- .+..+-++|+.|..+..+-+.
T Consensus 251 yfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~-----------~pa~~s~~~lr~Nl~~~~Pe~--- 316 (561)
T COG5354 251 YFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGY-----------MPASVSVFDLRGNLRFYFPEQ--- 316 (561)
T ss_pred eeccceEEEEeecccccceeccccccceeeeecccCCceeEEecc-----------cccceeecccccceEEecCCc---
Confidence 8899999999996543332 224556899999999999888622 246677788888744433222
Q ss_pred ccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccce-eccceeCCC
Q 012630 149 ENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLR-FRGVSWCDD 227 (459)
Q Consensus 149 ~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~-~~~~~Ws~D 227 (459)
....+.+||.+.+ ++++.- | .....+-.++. .| .-......... .+-..|+||
T Consensus 317 ------------~rNT~~fsp~~r~-il~agF----~-----nl~gni~i~~~---~~-rf~~~~~~~~~n~s~~~wspd 370 (561)
T COG5354 317 ------------KRNTIFFSPHERY-ILFAGF----D-----NLQGNIEIFDP---AG-RFKVAGAFNGLNTSYCDWSPD 370 (561)
T ss_pred ------------ccccccccCcccE-EEEecC----C-----ccccceEEecc---CC-ceEEEEEeecCCceEeeccCC
Confidence 1124588999884 443322 1 11234445555 44 54444333222 344589999
Q ss_pred CcEEEEEe--ec--CCccEEEEEEc
Q 012630 228 SLALVQET--WF--KTTQTRTWLIS 248 (459)
Q Consensus 228 ~~al~~~~--~~--~~~~~~ly~v~ 248 (459)
+.-+..+. .+ .+....||.|.
T Consensus 371 ~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 371 GQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ceEEEecCCCcccccCcceEEEEec
Confidence 85554332 22 24566777774
No 120
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.19 E-value=0.74 Score=30.09 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=23.7
Q ss_pred eEeccccceeccceeCCCCcEEEEEeecC-CccEEEEE
Q 012630 210 EILHKLDLRFRGVSWCDDSLALVQETWFK-TTQTRTWL 246 (459)
Q Consensus 210 ~~L~~~~~~~~~~~Ws~D~~al~~~~~~~-~~~~~ly~ 246 (459)
++|+........+.|||||..|++...+. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 35565666677899999997777766432 36677774
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=89.82 E-value=1 Score=46.51 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=23.2
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD 135 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~ 135 (459)
.++.++||+||++||-. .|...+-|||+.
T Consensus 366 ~Itsi~FS~dg~~LlSR-------------g~D~tLKvWDLr 394 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSR-------------GFDDTLKVWDLR 394 (641)
T ss_pred ceeEEEeccccchhhhc-------------cCCCceeeeecc
Confidence 56899999999999644 356778899976
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=89.40 E-value=8.3 Score=37.82 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=41.9
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
.+.++.+.||-|||+|+-.+. .+.|-||++.--+.+.- .-++-+.|. ..+-.+.++||.
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~-------------Dr~Ir~w~~~DF~~~eH--r~~R~nve~------dhpT~V~FapDc 144 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISG-------------DRSIRLWDVRDFENKEH--RCIRQNVEY------DHPTRVVFAPDC 144 (420)
T ss_pred CCceeeeEEcCCCceeEEEeC-------------CceEEEEecchhhhhhh--hHhhccccC------CCceEEEECCCc
Confidence 455689999999999988863 36677887643221100 011111111 144578999999
Q ss_pred CceEEEEE
Q 012630 172 PSTLYWVE 179 (459)
Q Consensus 172 ~~~l~~~~ 179 (459)
++.++|+.
T Consensus 145 ~s~vv~~~ 152 (420)
T KOG2096|consen 145 KSVVVSVK 152 (420)
T ss_pred ceEEEEEc
Confidence 98888775
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=89.30 E-value=3.1 Score=40.71 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=28.0
Q ss_pred ceEEEcCCCceee-cCCCc-eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEe
Q 012630 76 QLVLATLDGTVKE-FGPPA-IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWT 133 (459)
Q Consensus 76 qL~~v~~~G~~~~-l~~~~-~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d 133 (459)
-|.++++.|..-+ +-... ...+.+.||||++|+... |..++.||.
T Consensus 210 ~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~g-------------FTpDVkVwE 256 (420)
T KOG2096|consen 210 KICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSG-------------FTPDVKVWE 256 (420)
T ss_pred cEEEEecCCceeeeeccccccccceeeCCCCcEEEEec-------------CCCCceEEE
Confidence 4455555443322 22222 335899999999998874 667777775
No 124
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.23 E-value=0.81 Score=36.43 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=38.2
Q ss_pred HHHHHHhhcceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC
Q 012630 67 YLFEHYTTTQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG 136 (459)
Q Consensus 67 ~~f~~~~~sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g 136 (459)
..++.-.+++|+..|. +++.+-|-.. ....++++||||++|+|.-. ...+|..+++.|
T Consensus 29 ~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et------------~~~Ri~rywl~G 88 (89)
T PF03088_consen 29 DLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET------------GRYRILRYWLKG 88 (89)
T ss_dssp HHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG------------GGTEEEEEESSS
T ss_pred eeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec------------cCceEEEEEEeC
Confidence 3444568899999999 8888766553 33368999999999988852 235566666665
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.16 E-value=2.1 Score=43.71 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=78.2
Q ss_pred hhcceEEEcC-CCcee-ecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCcee-eeeecccccc
Q 012630 73 TTTQLVLATL-DGTVK-EFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFV-RQLCELPLVE 149 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~-~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~-~~lt~~p~~~ 149 (459)
..++|++++. +++.. -+.-++.++++.||-||+.|+.+. ...++|+||+....+ +...+ +
T Consensus 323 ~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-------------~~GeV~v~nl~~~~~~~rf~D----~ 385 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-------------GTGEVYVWNLRQNSCLHRFVD----D 385 (514)
T ss_pred cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-------------CCceEEEEecCCcceEEEEee----c
Confidence 4566677766 55432 333478889999999999998774 246899999875422 11111 1
Q ss_pred cccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc---cceeccceeCC
Q 012630 150 NIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL---DLRFRGVSWCD 226 (459)
Q Consensus 150 ~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~---~~~~~~~~Ws~ 226 (459)
+ .-+.-.+.=|++|. .++ -..+.|- -.||-... -|.++.|+.+... -..+..+.+++
T Consensus 386 G--------~v~gts~~~S~ng~-ylA--~GS~~Gi--------VNIYd~~s-~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 386 G--------SVHGTSLCISLNGS-YLA--TGSDSGI--------VNIYDGNS-CFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred C--------ccceeeeeecCCCc-eEE--eccCcce--------EEEeccch-hhccCCCCchhhhhhhheeeeeeeeCc
Confidence 1 11344667777877 222 2223331 13444333 3445577776542 33467789999
Q ss_pred CCcEEE-EEeecCCccEEEEEEc
Q 012630 227 DSLALV-QETWFKTTQTRTWLIS 248 (459)
Q Consensus 227 D~~al~-~~~~~~~~~~~ly~v~ 248 (459)
|+..|. .+.. .....+|..++
T Consensus 446 d~qiLAiaS~~-~knalrLVHvP 467 (514)
T KOG2055|consen 446 DAQILAIASRV-KKNALRLVHVP 467 (514)
T ss_pred chhhhhhhhhc-cccceEEEecc
Confidence 973333 2221 34455666664
No 126
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=89.04 E-value=4.3 Score=41.64 Aligned_cols=57 Identities=16% Similarity=0.310 Sum_probs=42.6
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
..++.++|+-||..|+.-+ +...+.+|+..|..+..+..- +.++-.+.|+-+|.
T Consensus 236 kdVT~L~Wn~~G~~LatG~-------------~~G~~riw~~~G~l~~tl~~H-------------kgPI~slKWnk~G~ 289 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGS-------------EDGEARIWNKDGNLISTLGQH-------------KGPIFSLKWNKKGT 289 (524)
T ss_pred CCcceEEecCCCCeEEEee-------------cCcEEEEEecCchhhhhhhcc-------------CCceEEEEEcCCCC
Confidence 4567999999999998875 457888999999888776653 22344778888886
Q ss_pred ceE
Q 012630 173 STL 175 (459)
Q Consensus 173 ~~l 175 (459)
++|
T Consensus 290 yil 292 (524)
T KOG0273|consen 290 YIL 292 (524)
T ss_pred EEE
Confidence 444
No 127
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=88.92 E-value=5.1 Score=39.20 Aligned_cols=67 Identities=21% Similarity=0.365 Sum_probs=37.4
Q ss_pred cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEe
Q 012630 89 FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWR 168 (459)
Q Consensus 89 l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~Ws 168 (459)
|+........+|||||+||+-.+.. .=+.||+-..+.++.--.....| .|+-....+.-+.+|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvD-------------GFiEVWny~~GKlrKDLkYQAqd----~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVD-------------GFIEVWNYTTGKLRKDLKYQAQD----NFMMMDDAVLCISFS 272 (508)
T ss_pred cccccchhheeeCCCCceEeecccc-------------ceeeeehhccchhhhhhhhhhhc----ceeecccceEEEeec
Confidence 4444444688999999999766532 34678885433333221222222 233444555667777
Q ss_pred cCCC
Q 012630 169 ADRP 172 (459)
Q Consensus 169 pDg~ 172 (459)
-|..
T Consensus 273 RDsE 276 (508)
T KOG0275|consen 273 RDSE 276 (508)
T ss_pred ccHH
Confidence 6654
No 128
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=88.84 E-value=6.4 Score=37.32 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=75.1
Q ss_pred eEEEcC-CC-ceeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccccc
Q 012630 77 LVLATL-DG-TVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIA 154 (459)
Q Consensus 77 L~~v~~-~G-~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~ 154 (459)
+-++|. +| ++..|..+..+.++.+|+||++|-..- ...+-.||...-.+..-.
T Consensus 167 VRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~--------------gssV~Fwdaksf~~lKs~----------- 221 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY--------------GSSVKFWDAKSFGLLKSY----------- 221 (334)
T ss_pred eEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec--------------CceeEEeccccccceeec-----------
Confidence 344455 66 455566666678999999999874441 234455665432221111
Q ss_pred ccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEec-cc-cceeccceeCCCCcEEE
Q 012630 155 YNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILH-KL-DLRFRGVSWCDDSLALV 232 (459)
Q Consensus 155 ~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~-~~-~~~~~~~~Ws~D~~al~ 232 (459)
.++..+-+.+-+|+.. +|+. +|. + --+|..|. ..|+...+. +. .....-+.++|||..+.
T Consensus 222 --k~P~nV~SASL~P~k~---~fVa---Gge-d------~~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 222 --KMPCNVESASLHPKKE---FFVA---GGE-D------FKVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred --cCccccccccccCCCc---eEEe---cCc-c------eEEEEEec---cCCceeeecccCCCCceEEEEECCCCceee
Confidence 1233445668888864 3332 221 1 13566665 434766664 22 12234468899997776
Q ss_pred EEeecCCccEEEEEEcCCC
Q 012630 233 QETWFKTTQTRTWLISPGS 251 (459)
Q Consensus 233 ~~~~~~~~~~~ly~v~~~~ 251 (459)
+.. .++..+||+..+..
T Consensus 284 sGS--EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 284 SGS--EDGTIRLWQTTPGK 300 (334)
T ss_pred ccC--CCceEEEEEecCCC
Confidence 554 36788999998754
No 129
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=88.63 E-value=1.7 Score=45.37 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=51.1
Q ss_pred cceEEEcCCCceeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccccc
Q 012630 75 TQLVLATLDGTVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIA 154 (459)
Q Consensus 75 sqL~~v~~~G~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~ 154 (459)
+-+.+.++.|.++--...+-...+-|||-|++|++.- +...+.++.|||+.. .+.|+.....
T Consensus 294 Akvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAG----------FGNL~G~mEvwDv~n--~K~i~~~~a~------ 355 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAG----------FGNLPGDMEVWDVPN--RKLIAKFKAA------ 355 (566)
T ss_pred ceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEee----------cCCCCCceEEEeccc--hhhccccccC------
Confidence 3444556666666444444456889999999998874 223479999999875 4455553222
Q ss_pred ccccccceeeeEEecCCCceEE
Q 012630 155 YNSVREGMRLISWRADRPSTLY 176 (459)
Q Consensus 155 ~~~~~~~~r~~~WspDg~~~l~ 176 (459)
+-.-+.|+|||.+.+.
T Consensus 356 ------~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 356 ------NTTVFEWSPDGEYFLT 371 (566)
T ss_pred ------CceEEEEcCCCcEEEE
Confidence 2236799999995444
No 130
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=88.24 E-value=9.7 Score=36.65 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=70.6
Q ss_pred cceEEEcC-CCcee-ecC-CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 75 TQLVLATL-DGTVK-EFG-PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 75 sqL~~v~~-~G~~~-~l~-~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
.-|.+.|+ +|+.+ +|- ....+.++++|||.++|.--+. .+.+-+|+.-|.-...+.+.-
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr-------------DkTiklwnt~g~ck~t~~~~~----- 146 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR-------------DKTIKLWNTLGVCKYTIHEDS----- 146 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC-------------cceeeeeeecccEEEEEecCC-----
Confidence 45777888 77655 443 4556689999999999854432 367889998887777776631
Q ss_pred cccccccccceeeeEEecCCCc-eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEec-cccceeccceeCCCCc
Q 012630 152 PIAYNSVREGMRLISWRADRPS-TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILH-KLDLRFRGVSWCDDSL 229 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~-~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~-~~~~~~~~~~Ws~D~~ 229 (459)
.+.=+.-+.|+|.... +|+ .+ +.| ..|.+++. .+-+-+.-. .-......+..||||.
T Consensus 147 ------~~~WVscvrfsP~~~~p~Iv--s~--s~D--------ktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 147 ------HREWVSCVRFSPNESNPIIV--SA--SWD--------KTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred ------CcCcEEEEEEcCCCCCcEEE--Ec--cCC--------ceEEEEcc---CCcchhhccccccccEEEEEECCCCC
Confidence 0222346799999532 333 11 222 23445555 332222111 1122234478899997
Q ss_pred EEEEE
Q 012630 230 ALVQE 234 (459)
Q Consensus 230 al~~~ 234 (459)
.+.+.
T Consensus 206 lcasG 210 (315)
T KOG0279|consen 206 LCASG 210 (315)
T ss_pred EEecC
Confidence 77764
No 131
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.18 E-value=7 Score=37.84 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=78.0
Q ss_pred eEEEcC-CCceee-c-CCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccc
Q 012630 77 LVLATL-DGTVKE-F-GPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPI 153 (459)
Q Consensus 77 L~~v~~-~G~~~~-l-~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~ 153 (459)
-.++|+ .|..+| | +....+..+++=|+|..++--+.. ...-++|+.......+.+.
T Consensus 211 aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~-------- 269 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD-------------ATCRLYDLRADQELAVYSH-------- 269 (343)
T ss_pred eeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC-------------ceeEEEeecCCcEEeeecc--------
Confidence 344566 555444 3 234566899999999876555422 3345666543322222221
Q ss_pred cccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEE
Q 012630 154 AYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQ 233 (459)
Q Consensus 154 ~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~ 233 (459)
+....|+-++.+|-.|+ |.|....|. ...++|. ..|...-.|..-+.|++-+.-+|||.++..
T Consensus 270 --~~~~~gitSv~FS~SGR--lLfagy~d~-----------~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 270 --DSIICGITSVAFSKSGR--LLFAGYDDF-----------TCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVAT 332 (343)
T ss_pred --CcccCCceeEEEccccc--EEEeeecCC-----------ceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEe
Confidence 23455777889999988 444433222 2445554 244344456666888999999999999998
Q ss_pred EeecCCccEEEE
Q 012630 234 ETWFKTTQTRTW 245 (459)
Q Consensus 234 ~~~~~~~~~~ly 245 (459)
..| +...+||
T Consensus 333 gSW--Ds~lriW 342 (343)
T KOG0286|consen 333 GSW--DSTLRIW 342 (343)
T ss_pred cch--hHheeec
Confidence 887 3445665
No 132
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.79 E-value=2.5 Score=45.67 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=54.0
Q ss_pred CcceEEEecC-CceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCC
Q 012630 126 PQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPV 204 (459)
Q Consensus 126 ~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf 204 (459)
.+.+.+||+. |..+|..+-. ...+..+.+||+|+ +|+ .|+. -..|..+|.
T Consensus 556 D~tVRlWDv~~G~~VRiF~GH-------------~~~V~al~~Sp~Gr-~La------Sg~e------d~~I~iWDl--- 606 (707)
T KOG0263|consen 556 DRTVRLWDVSTGNSVRIFTGH-------------KGPVTALAFSPCGR-YLA------SGDE------DGLIKIWDL--- 606 (707)
T ss_pred CceEEEEEcCCCcEEEEecCC-------------CCceEEEEEcCCCc-eEe------eccc------CCcEEEEEc---
Confidence 3677888864 6666654331 22445889999999 666 2221 235777777
Q ss_pred CCCCceEec-cccceeccceeCCCCcEEEEEeecCCccEEEEEE
Q 012630 205 EGEEPEILH-KLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 205 ~g~~~~~L~-~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v 247 (459)
.+|...... .-...+..+.+|.||.+|+.... +...++|-+
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lWD~ 648 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLWDL 648 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEEEc
Confidence 332333222 22333556889999988887552 455667744
No 133
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.34 E-value=4.8 Score=40.62 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=66.4
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
.+.+.++.+|+||..|+..+.. ..+-++|+.+.++++...- +..-.+ .......+|||+
T Consensus 341 gg~vtSl~ls~~g~~lLsssRD-------------dtl~viDlRt~eI~~~~sA---~g~k~a-----sDwtrvvfSpd~ 399 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSSSRD-------------DTLKVIDLRTKEIRQTFSA---EGFKCA-----SDWTRVVFSPDG 399 (459)
T ss_pred CcceeeEeeccCCeEEeeecCC-------------CceeeeecccccEEEEeec---cccccc-----cccceeEECCCC
Confidence 5677899999999999877522 4567888888888776552 221111 123456899999
Q ss_pred CceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecccc---ceeccceeCCCCcEEEEE
Q 012630 172 PSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLD---LRFRGVSWCDDSLALVQE 234 (459)
Q Consensus 172 ~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~---~~~~~~~Ws~D~~al~~~ 234 (459)
. .++ + | .....||+++. |+| +-....+.. ..+..+.|++-|..++..
T Consensus 400 ~-Yva---A---G------S~dgsv~iW~v--~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 400 S-YVA---A---G------SADGSVYIWSV--FTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred c-eee---e---c------cCCCcEEEEEc--cCc-eEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 8 232 1 1 22347888888 444 555444322 235567898877666643
No 134
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.14 E-value=1.3 Score=47.68 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=51.1
Q ss_pred hhcceEEEcCCCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeeccccccc
Q 012630 73 TTTQLVLATLDGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCELPLVEN 150 (459)
Q Consensus 73 ~~sqL~~v~~~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~~p~~~~ 150 (459)
.+-++|-+..+..+|.|+. .+-+..+.+||+|+||+--.. ...|-+||+.+ ..+.++-..
T Consensus 557 ~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e-------------d~~I~iWDl~~~~~v~~l~~H----- 618 (707)
T KOG0263|consen 557 RTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE-------------DGLIKIWDLANGSLVKQLKGH----- 618 (707)
T ss_pred ceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc-------------CCcEEEEEcCCCcchhhhhcc-----
Confidence 4456777664446666654 456789999999999976642 36789999875 444433221
Q ss_pred ccccccccccceeeeEEecCCCceEE
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLY 176 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~ 176 (459)
...+-++++|.||. .|+
T Consensus 619 --------t~ti~SlsFS~dg~-vLa 635 (707)
T KOG0263|consen 619 --------TGTIYSLSFSRDGN-VLA 635 (707)
T ss_pred --------cCceeEEEEecCCC-EEE
Confidence 22445789999998 444
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=84.64 E-value=3.4 Score=42.73 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=44.2
Q ss_pred hcceEEEcC-CCceeec-CCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEF-GPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l-~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
+++++++|. +-....+ +.....+-+++||||.+||+-+ ..++-|+ |.++..|.....+-.--. .
T Consensus 427 ~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyi----------y~Vs~~g~~y~r~~k~~g---s 492 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYI----------YRVSANGRKYSRVGKCSG---S 492 (626)
T ss_pred cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEE----------EEECCCCcEEEEeeeecC---c
Confidence 344555555 3222222 2345567899999999999996 3343332 555666665544433211 2
Q ss_pred cccccccccceeeeEEecCCC
Q 012630 152 PIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~ 172 (459)
|+ -.+-||+|++
T Consensus 493 ~i---------thLDwS~Ds~ 504 (626)
T KOG2106|consen 493 PI---------THLDWSSDSQ 504 (626)
T ss_pred ee---------EEeeecCCCc
Confidence 32 3679999988
No 136
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.98 E-value=14 Score=36.89 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred hhcceEEEcC--CCceee----cCC---CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeee
Q 012630 73 TTTQLVLATL--DGTVKE----FGP---PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLC 143 (459)
Q Consensus 73 ~~sqL~~v~~--~G~~~~----l~~---~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt 143 (459)
..+.|..|.+ .|+..+ +.. ...+..+.++.++..++|++ |...+|-.|+.|..++...
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S-------------y~G~v~~~dlsg~~~~~~~ 221 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS-------------YEGNVYSADLSGDSAKFGK 221 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB-------------TTSEEEEEEETTSSEEEEE
T ss_pred cCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe-------------cCCEEEEEeccCCcccccC
Confidence 3456666666 564431 221 12345666677777777775 4588888898888766554
Q ss_pred cccccccccccccccccceeeeEEecCCCceEE--------EEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc
Q 012630 144 ELPLVENIPIAYNSVREGMRLISWRADRPSTLY--------WVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL 215 (459)
Q Consensus 144 ~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~--------~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~ 215 (459)
...+... ..+.-.|+|-|-+.++ |+....++...-+ ..-.+||++|. ..++...-...
T Consensus 222 ~~~~~t~----------~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK-dpgteVWv~D~---~t~krv~Ri~l 287 (342)
T PF06433_consen 222 PWSLLTD----------AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK-DPGTEVWVYDL---KTHKRVARIPL 287 (342)
T ss_dssp EEESS-H----------HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT-S-EEEEEEEET---TTTEEEEEEEE
T ss_pred cccccCc----------cccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc-CCceEEEEEEC---CCCeEEEEEeC
Confidence 4322110 0112256666553332 2222222211111 11248999988 43122222223
Q ss_pred cceeccceeCCCCcEEEEEeecCCccEEEEEEcCCCC
Q 012630 216 DLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 216 ~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
+.....+.-+.|..=+++... .....|+++|+.+|
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~--~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALS--AGDGTLDVYDAATG 322 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEE--TTTTEEEEEETTT-
T ss_pred CCccceEEEccCCCcEEEEEc--CCCCeEEEEeCcCC
Confidence 333445666766543443221 12245888887765
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=83.97 E-value=16 Score=37.89 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=70.4
Q ss_pred ecCCC--ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeee
Q 012630 88 EFGPP--AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLI 165 (459)
Q Consensus 88 ~l~~~--~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~ 165 (459)
.|+.+ ..+.-+.+||--++|+.+... ...+.+||+.|....--+.. .-...-+++
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd------------~G~VtlwDv~g~sp~~~~~~-----------~HsAP~~gi 214 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASD------------KGAVTLWDVQGMSPIFHASE-----------AHSAPCRGI 214 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeecc------------CCeEEEEeccCCCcccchhh-----------hccCCcCcc
Confidence 45543 344578899999999888632 36788999988543321111 112234688
Q ss_pred EEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc---ccceeccceeCCCCcEEEEEeecCCccE
Q 012630 166 SWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK---LDLRFRGVSWCDDSLALVQETWFKTTQT 242 (459)
Q Consensus 166 ~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~---~~~~~~~~~Ws~D~~al~~~~~~~~~~~ 242 (459)
.++|-.++.|+-+. +-..|++.|. . .+.+++ .+..++.++++++|..|.... ...
T Consensus 215 cfspsne~l~vsVG------------~Dkki~~yD~---~---s~~s~~~l~y~~Plstvaf~~~G~~L~aG~----s~G 272 (673)
T KOG4378|consen 215 CFSPSNEALLVSVG------------YDKKINIYDI---R---SQASTDRLTYSHPLSTVAFSECGTYLCAGN----SKG 272 (673)
T ss_pred eecCCccceEEEec------------ccceEEEeec---c---cccccceeeecCCcceeeecCCceEEEeec----CCc
Confidence 99999886666442 1235666655 1 222222 234466788899986666432 223
Q ss_pred EEEEEcCCC
Q 012630 243 RTWLISPGS 251 (459)
Q Consensus 243 ~ly~v~~~~ 251 (459)
+||.+|...
T Consensus 273 ~~i~YD~R~ 281 (673)
T KOG4378|consen 273 ELIAYDMRS 281 (673)
T ss_pred eEEEEeccc
Confidence 577777653
No 138
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=83.93 E-value=18 Score=35.27 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=66.5
Q ss_pred CCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEec
Q 012630 90 GPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRA 169 (459)
Q Consensus 90 ~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~Wsp 169 (459)
+.++.+....|+|||.+++-. ++.++|++|++.|...-.-+-. .-+.-+-++.|..
T Consensus 45 gh~geI~~~~F~P~gs~~aSg-------------G~Dr~I~LWnv~gdceN~~~lk-----------gHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASG-------------GSDRAIVLWNVYGDCENFWVLK-----------GHSGAVMELHGMR 100 (338)
T ss_pred CCcceEEEEEECCCCCeEeec-------------CCcceEEEEeccccccceeeec-----------cccceeEeeeecc
Confidence 345667889999999987544 3568999999776543222111 1122334779999
Q ss_pred CCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCC-CcEEEEEeecCCccEEEEEEc
Q 012630 170 DRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDD-SLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 170 Dg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D-~~al~~~~~~~~~~~~ly~v~ 248 (459)
|+. .|+-. .. -..++.+|+ ..|+...-.+...++-+..--.+ |..++.... +++..+||-+-
T Consensus 101 d~s-~i~S~-gt-----------Dk~v~~wD~---~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs-dD~t~kl~D~R 163 (338)
T KOG0265|consen 101 DGS-HILSC-GT-----------DKTVRGWDA---ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS-DDGTLKLWDIR 163 (338)
T ss_pred CCC-EEEEe-cC-----------CceEEEEec---ccceeeehhccccceeeecCccccCCeEEEecC-CCceEEEEeec
Confidence 998 44432 11 126778887 43243333333333333221113 555665442 46677777664
No 139
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=83.81 E-value=4.3 Score=42.32 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHhhcceEEEcC--CCceeecCC-CceeeecccCCCCCeEE
Q 012630 71 HYTTTQLVLATL--DGTVKEFGP-PAIYTAVEPSPDQKYIL 108 (459)
Q Consensus 71 ~~~~sqL~~v~~--~G~~~~l~~-~~~~~~~~~SPDG~~l~ 108 (459)
|-...|+.+-++ .-++.++.+ .+++..++|||...-|+
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA 202 (737)
T ss_pred EecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee
Confidence 556678888888 456666665 46778999999888663
No 140
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.73 E-value=13 Score=42.58 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=25.9
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEec
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSID 113 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~ 113 (459)
.+.|.++|. ++...-++. ...+...+||||++.+++++.+
T Consensus 89 ~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 89 LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC
Confidence 344445544 444444443 3446889999999999999754
No 141
>PLN00181 protein SPA1-RELATED; Provisional
Probab=82.80 E-value=14 Score=41.68 Aligned_cols=123 Identities=11% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecC
Q 012630 91 PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 91 ~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
....+..++|||||++|+.... ...+.||+......... ....|+........+..+.|+|.
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~-------------D~~I~iwd~~~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~ 543 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGV-------------NKKIKIFECESIIKDGR-----DIHYPVVELASRSKLSGICWNSY 543 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeC-------------CCEEEEEECCccccccc-----ccccceEEecccCceeeEEeccC
Confidence 3455688999999999877653 36788898653211000 00011110111234567899987
Q ss_pred CCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCce-EeccccceeccceeCC-CCcEEEEEeecCCccEEEEEEc
Q 012630 171 RPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPE-ILHKLDLRFRGVSWCD-DSLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 171 g~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~-~L~~~~~~~~~~~Ws~-D~~al~~~~~~~~~~~~ly~v~ 248 (459)
....|+-. .. ...|.+++. ..++.. .+..-......+.|++ |+..|+... .++..++|-+.
T Consensus 544 ~~~~las~-~~-----------Dg~v~lWd~---~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs--~Dg~v~iWd~~ 606 (793)
T PLN00181 544 IKSQVASS-NF-----------EGVVQVWDV---ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS--DDGSVKLWSIN 606 (793)
T ss_pred CCCEEEEE-eC-----------CCeEEEEEC---CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc--CCCEEEEEECC
Confidence 55355422 11 225666666 322222 2222233456688986 666666544 24556666553
No 142
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.08 E-value=30 Score=32.80 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=67.1
Q ss_pred EEecCCCceEEEEE-eccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEE
Q 012630 166 SWRADRPSTLYWVE-TQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRT 244 (459)
Q Consensus 166 ~WspDg~~~l~~~~-~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~l 244 (459)
.-+|||+. |.. ..|.++ ..+ ....+||++-+ . +.+..++.--.--.+++|+-|...|++-. +.+..+
T Consensus 115 kvdP~Gry---y~GtMad~~~-~le-~~~g~Ly~~~~---~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD---sln~~V 182 (310)
T KOG4499|consen 115 KVDPDGRY---YGGTMADFGD-DLE-PIGGELYSWLA---G-HQVELIWNCVGISNGLAWDSDAKKFYYID---SLNYEV 182 (310)
T ss_pred ccCCCCce---eeeeeccccc-ccc-ccccEEEEecc---C-CCceeeehhccCCccccccccCcEEEEEc---cCceEE
Confidence 55788882 332 223332 111 34578999877 4 37777664332235689998876665533 333334
Q ss_pred --EEEcCCCCCC-CceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEc-CCCCCCCCcceEEEEEC
Q 012630 245 --WLISPGSKDT-APLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNG-RGATPEGDVPFLDLFNI 320 (459)
Q Consensus 245 --y~v~~~~~~~-~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~-~g~s~~gd~~~l~~~~l 320 (459)
|-++..+|.. .++.+++..-. ++.-..-|||-.| +....||... +|. .+.++|+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~-------~~~e~~~PDGm~I--------D~eG~L~Va~~ng~-------~V~~~dp 240 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKS-------QPFESLEPDGMTI--------DTEGNLYVATFNGG-------TVQKVDP 240 (310)
T ss_pred eeeecCCCcccccCcceeEEeccC-------CCcCCCCCCcceE--------ccCCcEEEEEecCc-------EEEEECC
Confidence 7777665533 24555543211 1111235676655 1123466654 322 2778888
Q ss_pred CCCce
Q 012630 321 NTGSK 325 (459)
Q Consensus 321 ~tg~~ 325 (459)
.||+.
T Consensus 241 ~tGK~ 245 (310)
T KOG4499|consen 241 TTGKI 245 (310)
T ss_pred CCCcE
Confidence 88875
No 143
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=81.79 E-value=2.7 Score=41.03 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=34.0
Q ss_pred hcceEEEcC-C-CceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeee
Q 012630 74 TTQLVLATL-D-GTVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQL 142 (459)
Q Consensus 74 ~sqL~~v~~-~-G~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~l 142 (459)
.+.+.+.|+ + +-.+-|++. .-+.++.||+||+.|+-.+.. ..+-+||+- |...+++
T Consensus 44 nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D-------------~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 44 NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD-------------WSIKLWDLLKGSPLKRI 103 (405)
T ss_pred CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCC-------------ceeEEEeccCCCceeEE
Confidence 345555555 3 233344442 345799999999999777632 446788854 5544444
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=81.63 E-value=26 Score=35.21 Aligned_cols=140 Identities=14% Similarity=0.241 Sum_probs=81.9
Q ss_pred hhcceEEEcC-CC----ceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc-eeeeeecc
Q 012630 73 TTTQLVLATL-DG----TVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK-FVRQLCEL 145 (459)
Q Consensus 73 ~~sqL~~v~~-~G----~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~-~~~~lt~~ 145 (459)
...+|++... +| ..++|+. ...+.+++|||--+-++++..- ...|-|||+..+ ....+...
T Consensus 232 c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEee
Confidence 5566777666 55 2345654 4567899999999988777632 356789996543 22223221
Q ss_pred cccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-ccceecccee
Q 012630 146 PLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRFRGVSW 224 (459)
Q Consensus 146 p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~~~~~W 224 (459)
+-...+.-++|+-+-+ .|+. ++| ...+-++|..-|..+.|...++ -...+..+.|
T Consensus 300 -----------Ah~sDVNVISWnr~~~-lLas-----G~D-------dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 300 -----------AHNSDVNVISWNRREP-LLAS-----GGD-------DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred -----------ccCCceeeEEccCCcc-eeee-----cCC-------CceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 2233556789998876 5552 222 1123334433356556665544 2445778999
Q ss_pred CCC-CcEEEEEeecCCccEEEEEEcCC
Q 012630 225 CDD-SLALVQETWFKTTQTRTWLISPG 250 (459)
Q Consensus 225 s~D-~~al~~~~~~~~~~~~ly~v~~~ 250 (459)
+|. ...|.... .+.+.-+|-+.++
T Consensus 356 ~p~e~s~iaasg--~D~QitiWDlsvE 380 (440)
T KOG0302|consen 356 HPHEDSVIAASG--EDNQITIWDLSVE 380 (440)
T ss_pred ccccCceEEecc--CCCcEEEEEeecc
Confidence 984 34444333 2456678877664
No 145
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=81.23 E-value=28 Score=33.48 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=61.9
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-CceeeeeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
...+-.++||++|.|||.-+.. +.+|||-.+ +++.-.++=+ .+. ...+....|.|-
T Consensus 105 EnEVK~Vaws~sG~~LATCSRD-------------KSVWiWe~deddEfec~aVL--~~H--------tqDVK~V~WHPt 161 (312)
T KOG0645|consen 105 ENEVKCVAWSASGNYLATCSRD-------------KSVWIWEIDEDDEFECIAVL--QEH--------TQDVKHVIWHPT 161 (312)
T ss_pred ccceeEEEEcCCCCEEEEeeCC-------------CeEEEEEecCCCcEEEEeee--ccc--------cccccEEEEcCC
Confidence 3455799999999999988743 668999765 3333322221 111 235568899996
Q ss_pred CCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceec----cceeCCCCcEEEEEeecCCccEEEEE
Q 012630 171 RPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFR----GVSWCDDSLALVQETWFKTTQTRTWL 246 (459)
Q Consensus 171 g~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~----~~~Ws~D~~al~~~~~~~~~~~~ly~ 246 (459)
.. .|+ .. .+-+.|....- +++ ..-++..+-..+. .+++.+.|.-++.-. +++..+||.
T Consensus 162 ~d-lL~-S~-----------SYDnTIk~~~~--~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s--dD~tv~Iw~ 223 (312)
T KOG0645|consen 162 ED-LLF-SC-----------SYDNTIKVYRD--EDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCS--DDGTVSIWR 223 (312)
T ss_pred cc-eeE-Ee-----------ccCCeEEEEee--cCC-CCeeEEEEecCccceEEEEEecCCCceEEEec--CCcceEeee
Confidence 55 444 22 12233333333 112 3233332222222 244456676666544 367777887
No 146
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.87 E-value=21 Score=34.86 Aligned_cols=117 Identities=13% Similarity=0.211 Sum_probs=61.8
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
....+++.|+||-+.|..+.+. | ..+.-++.+|..++.+.-.-.. .+-.+.|.-++
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~-p-----------~~iVElt~~GdlirtiPL~g~~------------DpE~Ieyig~n 140 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNK-P-----------AAIVELTKEGDLIRTIPLTGFS------------DPETIEYIGGN 140 (316)
T ss_pred cccccceeeCCCcceEEEecCC-C-----------ceEEEEecCCceEEEecccccC------------ChhHeEEecCC
Confidence 3447899999999998666543 2 3334457888888877432221 22245777666
Q ss_pred CceEEEEEeccCCccccccCCCCeEEeccCCCCCCC------CceEeccc---cceeccceeCCCCcEEEEEeecCCccE
Q 012630 172 PSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGE------EPEILHKL---DLRFRGVSWCDDSLALVQETWFKTTQT 242 (459)
Q Consensus 172 ~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~------~~~~L~~~---~~~~~~~~Ws~D~~al~~~~~~~~~~~ 242 (459)
.. .+ ++ . .+..+|.+..++ ++. ....|-.. ...+.+++|++.+..|+....++ -.
T Consensus 141 ~f-vi-~d---E--------R~~~l~~~~vd~-~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~--P~ 204 (316)
T COG3204 141 QF-VI-VD---E--------RDRALYLFTVDA-DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN--PI 204 (316)
T ss_pred EE-EE-Ee---h--------hcceEEEEEEcC-CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC--Cc
Confidence 52 11 11 1 112333332200 210 01112111 33578899999766666555434 34
Q ss_pred EEEEEc
Q 012630 243 RTWLIS 248 (459)
Q Consensus 243 ~ly~v~ 248 (459)
.||.+.
T Consensus 205 ~I~~~~ 210 (316)
T COG3204 205 GIFEVT 210 (316)
T ss_pred EEEEEe
Confidence 577775
No 147
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=80.17 E-value=18 Score=37.60 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=88.3
Q ss_pred cccCCChhhHHHHHHHhhcceEEEcCCCceee--cCC--CceeeecccCCCCCe--EEEEEeccCcccccccCCCCcceE
Q 012630 57 EGLLKDEFDEYLFEHYTTTQLVLATLDGTVKE--FGP--PAIYTAVEPSPDQKY--ILITSIDRPYSFTVSYTKFPQKVQ 130 (459)
Q Consensus 57 ~d~l~~~~D~~~f~~~~~sqL~~v~~~G~~~~--l~~--~~~~~~~~~SPDG~~--l~~~~~~~p~s~~v~~~~~~~~~~ 130 (459)
.++++...|...-.+...+.|+++.+++...+ +.. +..+.+++|||-|.+ |+|-+-.+ ..-+..+-
T Consensus 134 Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk--------~~kpa~~~ 205 (561)
T COG5354 134 WPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK--------LNKPAMVR 205 (561)
T ss_pred cceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc--------CCCCcEEE
Confidence 45788888888888899999999998664443 332 456789999998643 55544221 11134445
Q ss_pred EEecC-CceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCC--CeEEeccCCCCCCC
Q 012630 131 VWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPR--DIIYTQPAEPVEGE 207 (459)
Q Consensus 131 v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~--~~l~~~~~~pf~g~ 207 (459)
|+.+- +..+++.+-..+ ..=.+.|.+.|.++|+-++..-.-. + .+. ..||.++. ++
T Consensus 206 i~sIp~~s~l~tk~lfk~-------------~~~qLkW~~~g~~ll~l~~t~~ksn---K-syfgesnLyl~~~---~e- 264 (561)
T COG5354 206 ILSIPKNSVLVTKNLFKV-------------SGVQLKWQVLGKYLLVLVMTHTKSN---K-SYFGESNLYLLRI---TE- 264 (561)
T ss_pred EEEccCCCeeeeeeeEee-------------cccEEEEecCCceEEEEEEEeeecc---c-ceeccceEEEEee---cc-
Confidence 55443 222222221111 1125799999998888777543111 1 223 57888877 43
Q ss_pred CceEec-cccceeccceeCCC--CcEEEEE
Q 012630 208 EPEILH-KLDLRFRGVSWCDD--SLALVQE 234 (459)
Q Consensus 208 ~~~~L~-~~~~~~~~~~Ws~D--~~al~~~ 234 (459)
....+- ..........|.|+ ++++++.
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEec
Confidence 222221 34455677899886 4777763
No 148
>COG4099 Predicted peptidase [General function prediction only]
Probab=80.11 E-value=3.6 Score=40.10 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=27.9
Q ss_pred CCCCcEEEEEEEccCCCCCCCCCCc-eEEEEEcCC
Q 012630 407 RKDGVQLTAKLYLPTGYDPSKDGHL-LCLFWAYPG 440 (459)
Q Consensus 407 s~DG~~l~g~L~lP~~yd~~k~~ky-P~Il~~Yp~ 440 (459)
-+-|.+|.--||.|.+|+++| || |++||....
T Consensus 168 ~~tgneLkYrly~Pkdy~pdk--ky~PLvlfLHga 200 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDK--KYYPLVLFLHGA 200 (387)
T ss_pred cccCceeeEEEecccccCCCC--ccccEEEEEecC
Confidence 347899999999999999988 88 999998754
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=79.93 E-value=14 Score=36.45 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCceeecCC--Ccee-eecccCCCCCeEEEEEe
Q 012630 83 DGTVKEFGP--PAIY-TAVEPSPDQKYILITSI 112 (459)
Q Consensus 83 ~G~~~~l~~--~~~~-~~~~~SPDG~~l~~~~~ 112 (459)
.|....+.. |..+ .+..|||||.-||..+.
T Consensus 37 ~g~~~~~stt~p~nf~kgckWSPDGSciL~~se 69 (406)
T KOG2919|consen 37 GGNVIAFSTTKPLNFLKGCKWSPDGSCILSLSE 69 (406)
T ss_pred cCceEEeccCCchhhhccceeCCCCceEEeecc
Confidence 555554433 4433 58999999999998873
No 150
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=78.89 E-value=50 Score=31.84 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=73.2
Q ss_pred EEEcC-CCcee-ecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccc
Q 012630 78 VLATL-DGTVK-EFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAY 155 (459)
Q Consensus 78 ~~v~~-~G~~~-~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~ 155 (459)
.++|+ +|+.. ++..+..+..+.+|++|.++++++.+. ......+.++|+.-.......+.|..- +|
T Consensus 77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~--------mg~~~~v~~fdi~~~~~~~~s~ep~~k-I~--- 144 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ--------MGYTCFVSVFDIRDDSSDIDSEEPYLK-IP--- 144 (327)
T ss_pred EEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh--------cCcceEEEEEEccCChhhhcccCceEE-ec---
Confidence 34455 66544 555666678999999999999997442 122456677775421111111111100 00
Q ss_pred cccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc----cceeccceeCCCCcEE
Q 012630 156 NSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL----DLRFRGVSWCDDSLAL 231 (459)
Q Consensus 156 ~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~----~~~~~~~~Ws~D~~al 231 (459)
.....+-..-|.|-++ .|+.-. + ...|-.+|+ ..| .++... ...+..++.++|...|
T Consensus 145 -t~~skit~a~Wg~l~~-~ii~Gh--e----------~G~is~~da---~~g--~~~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 145 -TPDSKITSALWGPLGE-TIIAGH--E----------DGSISIYDA---RTG--KELVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred -CCccceeeeeecccCC-EEEEec--C----------CCcEEEEEc---ccC--ceeeechhhhccccccccccCCcceE
Confidence 0012334679999999 665221 1 123445555 211 222221 2246778999999889
Q ss_pred EEEeecCCccEEEEEE
Q 012630 232 VQETWFKTTQTRTWLI 247 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v 247 (459)
+.... +...+++-+
T Consensus 206 iT~s~--Dttakl~D~ 219 (327)
T KOG0643|consen 206 ITGSK--DTTAKLVDV 219 (327)
T ss_pred Eeccc--Cccceeeec
Confidence 87652 444455443
No 151
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=78.66 E-value=20 Score=41.18 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=39.7
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceE
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTL 175 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l 175 (459)
..++|-.||+|.|+.+.... .+..+.+-||+.+|. ..-.++ |... =...++|+|.|. .|
T Consensus 213 ~~ISWRGDG~yFAVss~~~~-------~~~~R~iRVy~ReG~-L~stSE-~v~g-----------Le~~l~WrPsG~-lI 271 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPE-------TGSRRVIRVYSREGE-LQSTSE-PVDG-----------LEGALSWRPSGN-LI 271 (928)
T ss_pred eEEEECCCCcEEEEEEEEcC-------CCceeEEEEECCCce-EEeccc-cCCC-----------ccCCccCCCCCC-EE
Confidence 57999999999999975211 112477888998864 222222 2211 123679999998 66
Q ss_pred EEEE
Q 012630 176 YWVE 179 (459)
Q Consensus 176 ~~~~ 179 (459)
+-+.
T Consensus 272 A~~q 275 (928)
T PF04762_consen 272 ASSQ 275 (928)
T ss_pred EEEE
Confidence 6443
No 152
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=77.10 E-value=13 Score=38.22 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=66.7
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceee-eeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVR-QLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~-~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
...+.+++||.+|..++-.+ |.+-+-+||.+.|.+. .... ..-+.-+...||
T Consensus 258 ~k~Vrd~~~s~~g~~fLS~s-------------fD~~lKlwDtETG~~~~~f~~--------------~~~~~cvkf~pd 310 (503)
T KOG0282|consen 258 RKPVRDASFNNCGTSFLSAS-------------FDRFLKLWDTETGQVLSRFHL--------------DKVPTCVKFHPD 310 (503)
T ss_pred hhhhhhhhccccCCeeeeee-------------cceeeeeeccccceEEEEEec--------------CCCceeeecCCC
Confidence 44567999999999986664 5677889998855443 2222 111224578888
Q ss_pred CCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-ccceeccceeCCCCcEEEEEeecCCccEEEEEEcC
Q 012630 171 RPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 171 g~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
++ -++++...| ..|..+|. ..++..+=+. .-.....+.+-++|..||+.. ++...++|....
T Consensus 311 ~~-n~fl~G~sd-----------~ki~~wDi---Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissS--Ddks~riWe~~~ 373 (503)
T KOG0282|consen 311 NQ-NIFLVGGSD-----------KKIRQWDI---RSGKVVQEYDRHLGAILDITFVDEGRRFISSS--DDKSVRIWENRI 373 (503)
T ss_pred CC-cEEEEecCC-----------CcEEEEec---cchHHHHHHHhhhhheeeeEEccCCceEeeec--cCccEEEEEcCC
Confidence 86 455554332 24566665 3223222111 122234466777888888766 355677887653
No 153
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.06 E-value=34 Score=37.48 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCceeecCC-CceeeecccCCCCCeEEEEEe
Q 012630 83 DGTVKEFGP-PAIYTAVEPSPDQKYILITSI 112 (459)
Q Consensus 83 ~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~ 112 (459)
+-++.-+++ ..+++.+.++|||++.++-+.
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred cCeeEeehhhhhhheeEEeccCCceEEEEEe
Confidence 445555555 577899999999999988863
No 154
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.77 E-value=81 Score=31.13 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=75.5
Q ss_pred eeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecccccee--ccceeCCCCcEEE-EEeecC
Q 012630 162 MRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRF--RGVSWCDDSLALV-QETWFK 238 (459)
Q Consensus 162 ~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~--~~~~Ws~D~~al~-~~~~~~ 238 (459)
...+..+|+.+..++|.+-+ | ..++++|. .+|.....+...+.++ +-..+|+||..|+ .+..++
T Consensus 7 gH~~a~~p~~~~avafaRRP--G---------~~~~v~D~--~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP--G---------TFALVFDC--RTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE 73 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC--C---------cEEEEEEc--CCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC
Confidence 45678888777566766532 1 24566665 3443444555555553 4468999986555 555566
Q ss_pred CccEEEEEEcCCCCCCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEE---c-CCCCCCCCcce
Q 012630 239 TTQTRTWLISPGSKDTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLN---G-RGATPEGDVPF 314 (459)
Q Consensus 239 ~~~~~ly~v~~~~~~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~---~-~g~s~~gd~~~ 314 (459)
+....|-+.+...+ .+.+-+.+..= -.|- ...+.+||+.+++-.-+ |-.. | ..-+.+...|-
T Consensus 74 ~g~G~IgVyd~~~~---~~ri~E~~s~G--IGPH--el~l~pDG~tLvVANGG-------I~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 74 TGRGVIGVYDAARG---YRRIGEFPSHG--IGPH--ELLLMPDGETLVVANGG-------IETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred CCcEEEEEEECcCC---cEEEeEecCCC--cChh--hEEEcCCCCEEEEEcCC-------CccCcccCceecChhhcCCc
Confidence 67777777777521 23332222100 0122 23467888755443211 1111 0 01123455677
Q ss_pred EEEEECCCCceEEEee
Q 012630 315 LDLFNINTGSKERIWE 330 (459)
Q Consensus 315 l~~~~l~tg~~~~l~~ 330 (459)
|..+|..+|+.-.-|.
T Consensus 140 L~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 140 LVYLDARSGALLEQVE 155 (305)
T ss_pred eEEEecCCCceeeeee
Confidence 8888878887654443
No 155
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=76.13 E-value=13 Score=39.01 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=75.1
Q ss_pred HHHHhhcceEEEcC-CCceeecCC------CceeeecccCCCCCeEEEEEeccCccccc----ccCCCCcceEEEecCCc
Q 012630 69 FEHYTTTQLVLATL-DGTVKEFGP------PAIYTAVEPSPDQKYILITSIDRPYSFTV----SYTKFPQKVQVWTADGK 137 (459)
Q Consensus 69 f~~~~~sqL~~v~~-~G~~~~l~~------~~~~~~~~~SPDG~~l~~~~~~~p~s~~v----~~~~~~~~~~v~d~~g~ 137 (459)
..++.++|+.+++. .-++.+|.. ...+.-+.|=|-++.+..++-..+..|.- ++..-+- -|..-.+|.
T Consensus 189 lIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p-~~~~~k~~~ 267 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP-SYQALKDGD 267 (636)
T ss_pred EEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC-cccccCCCC
Confidence 34678889999887 544444332 23345788988887775554333333221 0000000 000001122
Q ss_pred eeeeeeccccccccccccc-ccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc-
Q 012630 138 FVRQLCELPLVENIPIAYN-SVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL- 215 (459)
Q Consensus 138 ~~~~lt~~p~~~~~P~~~~-~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~- 215 (459)
.-..++..-.....|+.-- -...++.+|.+||||+ .|+-| .+|+ -|.+.+. +. .+|...
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~V-SqDG-----------fLRvF~f---dt---~eLlg~m 328 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATV-SQDG-----------FLRIFDF---DT---QELLGVM 328 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEE-ecCc-----------eEEEeec---cH---HHHHHHH
Confidence 2222222111111232110 1112567899999999 67755 2333 3444444 32 223222
Q ss_pred cceecc---ceeCCCCcEEEEEeecCCccEEEEEE
Q 012630 216 DLRFRG---VSWCDDSLALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 216 ~~~~~~---~~Ws~D~~al~~~~~~~~~~~~ly~v 247 (459)
...+++ +.|||||..|+.... +....||.+
T Consensus 329 kSYFGGLLCvcWSPDGKyIvtGGE--DDLVtVwSf 361 (636)
T KOG2394|consen 329 KSYFGGLLCVCWSPDGKYIVTGGE--DDLVTVWSF 361 (636)
T ss_pred HhhccceEEEEEcCCccEEEecCC--cceEEEEEe
Confidence 223455 589999988776542 333445655
No 156
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=75.90 E-value=30 Score=35.75 Aligned_cols=136 Identities=17% Similarity=0.231 Sum_probs=73.2
Q ss_pred eEEEcC--CCceee-cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeeccccccccc
Q 012630 77 LVLATL--DGTVKE-FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIP 152 (459)
Q Consensus 77 L~~v~~--~G~~~~-l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P 152 (459)
|++.-+ ++.+.. .+..+.+..+.|.|-|+-||-.+.. ..+-||... +.-..-+
T Consensus 341 i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD-------------~TlkiWs~~~~~~~~~l---------- 397 (524)
T KOG0273|consen 341 IHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDD-------------GTLKIWSMGQSNSVHDL---------- 397 (524)
T ss_pred EEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCC-------------CeeEeeecCCCcchhhh----------
Confidence 455444 333333 3445677899999999988766532 566777632 2222111
Q ss_pred ccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCce-EeccccceeccceeCCCCcEE
Q 012630 153 IAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPE-ILHKLDLRFRGVSWCDDSLAL 231 (459)
Q Consensus 153 ~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~-~L~~~~~~~~~~~Ws~D~~al 231 (459)
.+-....-.+.|||+|+.+- .+..+.......+...|.++++ ..|.+. .|++.......++++|||..+
T Consensus 398 ---~~Hskei~t~~wsp~g~v~~----n~~~~~~l~sas~dstV~lwdv---~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 398 ---QAHSKEIYTIKWSPTGPVTS----NPNMNLMLASASFDSTVKLWDV---ESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred ---hhhccceeeEeecCCCCccC----CCcCCceEEEeecCCeEEEEEc---cCCceeEeeccCCCceEEEEecCCCcEE
Confidence 12233455779999998211 1111222222233445666666 322322 333333345668899999888
Q ss_pred EEEeecCCccEEEEEE
Q 012630 232 VQETWFKTTQTRTWLI 247 (459)
Q Consensus 232 ~~~~~~~~~~~~ly~v 247 (459)
.+... +...++|-+
T Consensus 468 AsGs~--dg~V~iws~ 481 (524)
T KOG0273|consen 468 ASGSL--DGCVHIWST 481 (524)
T ss_pred EecCC--CCeeEeccc
Confidence 87542 445556654
No 157
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=74.32 E-value=79 Score=31.16 Aligned_cols=136 Identities=13% Similarity=0.237 Sum_probs=73.5
Q ss_pred HHhhcceEEEcC-CCceeec--------------CCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC
Q 012630 71 HYTTTQLVLATL-DGTVKEF--------------GPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD 135 (459)
Q Consensus 71 ~~~~sqL~~v~~-~G~~~~l--------------~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~ 135 (459)
|.-+.+|..-.- ++.++.| .+...+..+++-|-|.+|++-+.. ..+.++|++
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH-------------p~~rlYdv~ 246 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH-------------PTLRLYDVN 246 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC-------------CceeEEecc
Confidence 556666655433 5555543 234556799999999999998643 234566665
Q ss_pred CceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-
Q 012630 136 GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK- 214 (459)
Q Consensus 136 g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~- 214 (459)
..+-- +...|. +....++-.+.+|+.|. ||.+..-|+ .|..+| |-..+-+..
T Consensus 247 T~Qcf-vsanPd--------~qht~ai~~V~Ys~t~~--lYvTaSkDG-----------~IklwD-----GVS~rCv~t~ 299 (430)
T KOG0640|consen 247 TYQCF-VSANPD--------DQHTGAITQVRYSSTGS--LYVTASKDG-----------AIKLWD-----GVSNRCVRTI 299 (430)
T ss_pred ceeEe-eecCcc--------cccccceeEEEecCCcc--EEEEeccCC-----------cEEeec-----cccHHHHHHH
Confidence 43221 222122 12344566788998866 555543333 233332 211111111
Q ss_pred ----ccceeccceeCCCCcEEEEEeecCCccEEEEEEc
Q 012630 215 ----LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 215 ----~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~ 248 (459)
....+-...++.||..++++. .+...+||.+.
T Consensus 300 ~~AH~gsevcSa~Ftkn~kyiLsSG--~DS~vkLWEi~ 335 (430)
T KOG0640|consen 300 GNAHGGSEVCSAVFTKNGKYILSSG--KDSTVKLWEIS 335 (430)
T ss_pred HhhcCCceeeeEEEccCCeEEeecC--Ccceeeeeeec
Confidence 111233356778887777765 24567788774
No 158
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=74.24 E-value=28 Score=36.43 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=47.4
Q ss_pred cceEEEcCCCceeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccccc
Q 012630 75 TQLVLATLDGTVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIA 154 (459)
Q Consensus 75 sqL~~v~~~G~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~ 154 (459)
+-+++|+.+-|+..-....+++.+.+-|.|-+++--+. .-.+-.||.+|=...--.. ..-.|
T Consensus 150 ~~~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~-------------Dy~v~~wDf~gMdas~~~f---r~l~P-- 211 (641)
T KOG0772|consen 150 SIIKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSL-------------DYTVKFWDFQGMDASMRSF---RQLQP-- 211 (641)
T ss_pred chhhcCCccceEeccCCceEEEEeeecCCCceeeeccc-------------cceEEEEecccccccchhh---hccCc--
Confidence 34556664555554444567789999999988744432 2446778877633211111 11112
Q ss_pred ccccccceeeeEEecCCCceEE
Q 012630 155 YNSVREGMRLISWRADRPSTLY 176 (459)
Q Consensus 155 ~~~~~~~~r~~~WspDg~~~l~ 176 (459)
.....+++++||+.|..+|+
T Consensus 212 --~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 212 --CETHQINSLQYSVTGDQILV 231 (641)
T ss_pred --ccccccceeeecCCCCeEEE
Confidence 12345578999999995444
No 159
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.21 E-value=1.6e+02 Score=33.22 Aligned_cols=129 Identities=13% Similarity=0.183 Sum_probs=68.1
Q ss_pred hcceEEEcC-CCc-eeecC-CCceeeecccCC-CCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeeccccc
Q 012630 74 TTQLVLATL-DGT-VKEFG-PPAIYTAVEPSP-DQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCELPLV 148 (459)
Q Consensus 74 ~sqL~~v~~-~G~-~~~l~-~~~~~~~~~~SP-DG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~~p~~ 148 (459)
.+.|.++|+ +++ ...+. ..+.+..++|+| ||.+|+..+. ...+.+||+.. ..+..+..
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-------------Dg~v~iWd~~~~~~~~~~~~---- 616 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-------------DGSVKLWSINQGVSIGTIKT---- 616 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-------------CCEEEEEECCCCcEEEEEec----
Confidence 345666677 553 33343 245567999997 7887765542 36789999863 33333321
Q ss_pred ccccccccccccceeeeEEec-CCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCC-ce-EeccccceeccceeC
Q 012630 149 ENIPIAYNSVREGMRLISWRA-DRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEE-PE-ILHKLDLRFRGVSWC 225 (459)
Q Consensus 149 ~~~P~~~~~~~~~~r~~~Wsp-Dg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~-~~-~L~~~~~~~~~~~Ws 225 (459)
...+..+.|++ +|. .|+.. .. ...|++++. ..+. +. .+..-......+.|.
T Consensus 617 ----------~~~v~~v~~~~~~g~-~latg-s~-----------dg~I~iwD~---~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 617 ----------KANICCVQFPSESGR-SLAFG-SA-----------DHKVYYYDL---RNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred ----------CCCeEEEEEeCCCCC-EEEEE-eC-----------CCeEEEEEC---CCCCccceEecCCCCCEEEEEEe
Confidence 11234667855 455 55532 21 124666665 2211 22 222222335567786
Q ss_pred CCCcEEEEEeecCCccEEEEEEc
Q 012630 226 DDSLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 226 ~D~~al~~~~~~~~~~~~ly~v~ 248 (459)
|+..|+.... +...++|-+.
T Consensus 671 -~~~~lvs~s~--D~~ikiWd~~ 690 (793)
T PLN00181 671 -DSSTLVSSST--DNTLKLWDLS 690 (793)
T ss_pred -CCCEEEEEEC--CCEEEEEeCC
Confidence 4445554432 4557777764
No 160
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.16 E-value=69 Score=35.19 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=41.6
Q ss_pred ecCCCceeeecccCCCC-CeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeE
Q 012630 88 EFGPPAIYTAVEPSPDQ-KYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLIS 166 (459)
Q Consensus 88 ~l~~~~~~~~~~~SPDG-~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~ 166 (459)
-|..+..++.++|.|-- +|++=-+ ....+-||++...++.-.+++. .-+-.+.
T Consensus 405 ~F~HndfVTcVaFnPvDDryFiSGS-------------LD~KvRiWsI~d~~Vv~W~Dl~-------------~lITAvc 458 (712)
T KOG0283|consen 405 VFSHNDFVTCVAFNPVDDRYFISGS-------------LDGKVRLWSISDKKVVDWNDLR-------------DLITAVC 458 (712)
T ss_pred EEecCCeeEEEEecccCCCcEeecc-------------cccceEEeecCcCeeEeehhhh-------------hhheeEE
Confidence 34446777888888854 4432222 3477889998877777666642 2233789
Q ss_pred EecCCCceEE
Q 012630 167 WRADRPSTLY 176 (459)
Q Consensus 167 WspDg~~~l~ 176 (459)
++|||++.|+
T Consensus 459 y~PdGk~avI 468 (712)
T KOG0283|consen 459 YSPDGKGAVI 468 (712)
T ss_pred eccCCceEEE
Confidence 9999996664
No 161
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=74.12 E-value=31 Score=34.89 Aligned_cols=69 Identities=10% Similarity=0.144 Sum_probs=40.7
Q ss_pred ceeeeEEecCCCceEEEEEeccCC-------cc-ccccCCCCeEEeccCCCCCCCCceEeccccce-eccceeCCCCcEE
Q 012630 161 GMRLISWRADRPSTLYWVETQDGG-------AA-KVEVSPRDIIYTQPAEPVEGEEPEILHKLDLR-FRGVSWCDDSLAL 231 (459)
Q Consensus 161 ~~r~~~WspDg~~~l~~~~~~d~g-------~~-~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~-~~~~~Ws~D~~al 231 (459)
.+..+.|.|||. ||+....... .. .........|+.++. +|++.+.+. ...+ -.+++|+++|..+
T Consensus 125 ~~~~l~~gpDG~--LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a-~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 125 SLNSLAWGPDGW--LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVA-HGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred cccCceECCCCC--EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEe-cCcCCCccceECCCCCEE
Confidence 456889999986 6655431111 00 011123457888887 764554443 3444 4568999988777
Q ss_pred EEEe
Q 012630 232 VQET 235 (459)
Q Consensus 232 ~~~~ 235 (459)
+.+.
T Consensus 199 ~tdn 202 (367)
T TIGR02604 199 FCDN 202 (367)
T ss_pred EEcc
Confidence 7654
No 162
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=73.70 E-value=1e+02 Score=30.92 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=65.2
Q ss_pred CceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeeecccccccccccccccccc
Q 012630 84 GTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREG 161 (459)
Q Consensus 84 G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~ 161 (459)
-...-|.. .+.+-.++++|+- .|+.+- +....-+||+.. |...-+++.. ...
T Consensus 55 dS~~tF~~H~~svFavsl~P~~-~l~aTG------------GgDD~AflW~~~~ge~~~eltgH-------------KDS 108 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNN-NLVATG------------GGDDLAFLWDISTGEFAGELTGH-------------KDS 108 (399)
T ss_pred cceeehhhcCCceEEEEeCCCC-ceEEec------------CCCceEEEEEccCCcceeEecCC-------------CCc
Confidence 33344443 4556789999944 444442 234556889876 4444444432 224
Q ss_pred eeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCcc
Q 012630 162 MRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQ 241 (459)
Q Consensus 162 ~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~ 241 (459)
+-...||-||. .|+ .||. -..|++... -+|++...|...-..+..+.|+|-+..|+... ++..
T Consensus 109 Vt~~~Fshdgt-lLA------TGdm------sG~v~v~~~--stg~~~~~~~~e~~dieWl~WHp~a~illAG~--~DGs 171 (399)
T KOG0296|consen 109 VTCCSFSHDGT-LLA------TGDM------SGKVLVFKV--STGGEQWKLDQEVEDIEWLKWHPRAHILLAGS--TDGS 171 (399)
T ss_pred eEEEEEccCce-EEE------ecCC------CccEEEEEc--ccCceEEEeecccCceEEEEecccccEEEeec--CCCc
Confidence 55789999988 555 2221 223444443 12445555553334456678888654555433 2344
Q ss_pred EEEEEEc
Q 012630 242 TRTWLIS 248 (459)
Q Consensus 242 ~~ly~v~ 248 (459)
.-.|+|+
T Consensus 172 vWmw~ip 178 (399)
T KOG0296|consen 172 VWMWQIP 178 (399)
T ss_pred EEEEECC
Confidence 4445554
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=72.73 E-value=6.5 Score=42.24 Aligned_cols=19 Identities=42% Similarity=0.567 Sum_probs=16.6
Q ss_pred eeecccCCCCCeEEEEEec
Q 012630 95 YTAVEPSPDQKYILITSID 113 (459)
Q Consensus 95 ~~~~~~SPDG~~l~~~~~~ 113 (459)
+..+.|||||+|||-++..
T Consensus 575 VT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred EEEEEECCCCcEEEEeecC
Confidence 4689999999999999855
No 164
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=70.99 E-value=18 Score=34.89 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.6
Q ss_pred ceeeeEEecCCCceEEEEE
Q 012630 161 GMRLISWRADRPSTLYWVE 179 (459)
Q Consensus 161 ~~r~~~WspDg~~~l~~~~ 179 (459)
.=|-+.||||+. .|++++
T Consensus 45 QWRkl~WSpD~t-lLa~a~ 62 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAE 62 (282)
T ss_pred hheEEEECCCCc-EEEEEc
Confidence 447899999999 788765
No 165
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=70.77 E-value=7.2 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.2
Q ss_pred CceeeecccCCCCCeEEEEEe
Q 012630 92 PAIYTAVEPSPDQKYILITSI 112 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~ 112 (459)
...+..++|+|++++|+..+.
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~ 31 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSS 31 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEET
T ss_pred CCcEEEEEEecccccceeeCC
Confidence 456689999999999988863
No 166
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=70.11 E-value=32 Score=36.21 Aligned_cols=60 Identities=17% Similarity=0.360 Sum_probs=41.7
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
.+.+..-+|||||.-|+-+- ....+-+|...|-....+++. .+.++.+.|-|++
T Consensus 104 ~~A~~~gRW~~dGtgLlt~G-------------EDG~iKiWSrsGMLRStl~Q~-------------~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 104 AAAISSGRWSPDGAGLLTAG-------------EDGVIKIWSRSGMLRSTVVQN-------------EESIRCARWAPNS 157 (737)
T ss_pred hhhhhhcccCCCCceeeeec-------------CCceEEEEeccchHHHHHhhc-------------CceeEEEEECCCC
Confidence 34557889999999886552 246678888777554444442 3467889999999
Q ss_pred CceEEEE
Q 012630 172 PSTLYWV 178 (459)
Q Consensus 172 ~~~l~~~ 178 (459)
. .++|.
T Consensus 158 ~-~vl~c 163 (737)
T KOG1524|consen 158 N-SIVFC 163 (737)
T ss_pred C-ceEEe
Confidence 9 55555
No 167
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=70.00 E-value=7.9 Score=40.01 Aligned_cols=40 Identities=8% Similarity=-0.052 Sum_probs=31.8
Q ss_pred CceEEEEEECC-CCcEEEEEEEccCCCCCCCCCCceEEEEEcCC
Q 012630 398 LQKELIKYQRK-DGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPG 440 (459)
Q Consensus 398 ~~~E~i~yks~-DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~ 440 (459)
+..+.++|.|. -|.+..-|+|+|++|+ .+ +||+|+..=..
T Consensus 178 g~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~--~~PvlyllDG~ 218 (411)
T PRK10439 178 SPAKEIIWKSERLGNSRRVWIYTTGDAA-PE--ERPLAILLDGQ 218 (411)
T ss_pred CceEEEEEEccccCCceEEEEEECCCCC-CC--CCCEEEEEECH
Confidence 45677888776 7888999999999997 34 79999887443
No 168
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=69.06 E-value=8.6 Score=39.77 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=30.3
Q ss_pred CceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcC
Q 012630 398 LQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYP 439 (459)
Q Consensus 398 ~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp 439 (459)
...|.|+++..||.+|.|+|++|.+ ++ ++|+||.+-.
T Consensus 166 ~~~e~v~i~~~~g~~l~g~l~~P~~---~~--~~P~Vli~gG 202 (414)
T PRK05077 166 GELKELEFPIPGGGPITGFLHLPKG---DG--PFPTVLVCGG 202 (414)
T ss_pred CceEEEEEEcCCCcEEEEEEEECCC---CC--CccEEEEeCC
Confidence 4688999999999999999999973 23 7899997643
No 169
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=68.67 E-value=21 Score=38.99 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=61.4
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.+.++..+|+|+.++++.....+. .......+|+.|... ++.++. ..+...+.|||||.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~d~~~--~~~~~~--------------~~~~~~~~~spdg~- 72 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFL----KPLYKSSLWVSDGKT--VRLLTF--------------GGGVSELRWSPDGS- 72 (620)
T ss_pred cccCcccCCCCceeEEeecccccc----ccccccceEEEeccc--cccccc--------------CCcccccccCCCCC-
Confidence 356899999999999997542211 122345566654332 222222 22445679999999
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEE
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQ 233 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~ 233 (459)
.++++.. +++ ...++|.++. . + .+.........+.|++++..++.
T Consensus 73 ~~~~~~~-~~~-------~~~~l~l~~~---~-g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 73 VLAFVST-DGG-------RVAQLYLVDV---G-G---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred EEEEEec-cCC-------CcceEEEEec---C-C---ceeeeecccccceeCCCCCeEEE
Confidence 7887762 121 1467888877 4 2 33334444566888888644433
No 170
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=68.27 E-value=85 Score=32.16 Aligned_cols=154 Identities=17% Similarity=0.249 Sum_probs=85.1
Q ss_pred cccCCChhhHHHHHHHh-hcceEEEcC-CCcee--ecC--CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceE
Q 012630 57 EGLLKDEFDEYLFEHYT-TTQLVLATL-DGTVK--EFG--PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQ 130 (459)
Q Consensus 57 ~d~l~~~~D~~~f~~~~-~sqL~~v~~-~G~~~--~l~--~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~ 130 (459)
.|.--...++.+|..-. .+.|.++|+ .++.+ ... ..+.+..++|+|=+.+|+.+.. -...+.
T Consensus 231 eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S------------~D~tV~ 298 (422)
T KOG0264|consen 231 EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS------------ADKTVA 298 (422)
T ss_pred ehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc------------CCCcEE
Confidence 44444445566665433 356777787 54221 111 1455679999999999988853 247789
Q ss_pred EEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCC----
Q 012630 131 VWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEG---- 206 (459)
Q Consensus 131 v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g---- 206 (459)
+||+. .+.. .+..+.+-...+-.+.|||.-. ++.-.. +-|. .|.++|+ ---|
T Consensus 299 LwDlR-----nL~~------~lh~~e~H~dev~~V~WSPh~e-tvLASS---g~D~--------rl~vWDl-s~ig~eq~ 354 (422)
T KOG0264|consen 299 LWDLR-----NLNK------PLHTFEGHEDEVFQVEWSPHNE-TVLASS---GTDR--------RLNVWDL-SRIGEEQS 354 (422)
T ss_pred Eeech-----hccc------CceeccCCCcceEEEEeCCCCC-ceeEec---ccCC--------cEEEEec-cccccccC
Confidence 99854 2222 1233344455667889999988 444222 2222 1222222 0012
Q ss_pred ------CCceEecc-ccc--eeccceeCCCC-cEEEEEeecCCccEEEEEEc
Q 012630 207 ------EEPEILHK-LDL--RFRGVSWCDDS-LALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 207 ------~~~~~L~~-~~~--~~~~~~Ws~D~-~al~~~~~~~~~~~~ly~v~ 248 (459)
|.|..|+. +.. ....+.|.|.. ..|.+.. ++...+||++.
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva--eDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA--EDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec--CCceEEEeecc
Confidence 23443432 222 24668999976 4455444 35677888874
No 171
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.99 E-value=1.1e+02 Score=29.14 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=39.0
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceE
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTL 175 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l 175 (459)
.+-..+|||||..-+....++.+ ......+|.| +.|..+..+...-.- ...+.|+.|.+ +.
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~l----e~~~g~Ly~~-~~~h~v~~i~~~v~I-------------sNgl~Wd~d~K-~f 172 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDL----EPIGGELYSW-LAGHQVELIWNCVGI-------------SNGLAWDSDAK-KF 172 (310)
T ss_pred ccCccCCCCceeeeeeccccccc----cccccEEEEe-ccCCCceeeehhccC-------------CccccccccCc-EE
Confidence 57789999999655543334322 2234666666 444455444442111 12579999988 88
Q ss_pred EEEEec
Q 012630 176 YWVETQ 181 (459)
Q Consensus 176 ~~~~~~ 181 (459)
||+...
T Consensus 173 Y~iDsl 178 (310)
T KOG4499|consen 173 YYIDSL 178 (310)
T ss_pred EEEccC
Confidence 877543
No 172
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=67.37 E-value=1.2e+02 Score=29.07 Aligned_cols=145 Identities=13% Similarity=0.083 Sum_probs=83.8
Q ss_pred cCCChhhHHHHHHHhhcceEEEcC-CCceeecCC----CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEe
Q 012630 59 LLKDEFDEYLFEHYTTTQLVLATL-DGTVKEFGP----PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWT 133 (459)
Q Consensus 59 ~l~~~~D~~~f~~~~~sqL~~v~~-~G~~~~l~~----~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d 133 (459)
.|.-..|...+.-....++-+.|+ ++...++.. ...+..+.|--||++++-.+ ....+-|||
T Consensus 45 rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-------------eDgt~kIWd 111 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-------------EDGTVKIWD 111 (311)
T ss_pred eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-------------CCceEEEEe
Confidence 344445566666678889999999 776655443 35678899999999875443 236678888
Q ss_pred cCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCC-CCceEe
Q 012630 134 ADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEG-EEPEIL 212 (459)
Q Consensus 134 ~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g-~~~~~L 212 (459)
+..-...++.+.+ ..+..+.-.|+.. .|+ +..+ ...|+++|. .. .-.++|
T Consensus 112 lR~~~~qR~~~~~-------------spVn~vvlhpnQt-eLi-s~dq-----------sg~irvWDl---~~~~c~~~l 162 (311)
T KOG0315|consen 112 LRSLSCQRNYQHN-------------SPVNTVVLHPNQT-ELI-SGDQ-----------SGNIRVWDL---GENSCTHEL 162 (311)
T ss_pred ccCcccchhccCC-------------CCcceEEecCCcc-eEE-eecC-----------CCcEEEEEc---cCCcccccc
Confidence 7653333333321 1233556666655 333 1111 235777776 11 123444
Q ss_pred cc-ccceeccceeCCCCcEEEEEeecCCccEEEEEE
Q 012630 213 HK-LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 213 ~~-~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v 247 (459)
.. .+..+..+.-.+||..++.... .++-.+|.+
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nn--kG~cyvW~l 196 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANN--KGNCYVWRL 196 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecC--CccEEEEEc
Confidence 43 3334566777889877776542 344445554
No 173
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=66.19 E-value=1.2e+02 Score=30.08 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=73.1
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccccc---ccccccccceeeeEEecCCC
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIP---IAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P---~~~~~~~~~~r~~~WspDg~ 172 (459)
.++++.+||.++ ++.... . .......|+.++.+|...+.+ ..|..-... ...-....|.-+++.+|||+
T Consensus 88 Egi~~~~~g~~~-is~E~~-~-----~~~~~p~I~~~~~~G~~~~~~-~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 88 EGIAVPPDGSFW-ISSEGG-R-----TGGIPPRIRRFDLDGRVIRRF-PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred hHeEEecCCCEE-EEeCCc-c-----CCCCCCEEEEECCCCcccceE-ccccccccccCccccccCCCCeEEEEECCCCC
Confidence 477777888654 333221 0 011135678888887765555 222211000 01123356778899999999
Q ss_pred ceEEEE-EeccCCccccc---cCCCCeEEeccCCCCCCCC-ceE-ecc--------ccceeccceeCCCCcEEEEEeecC
Q 012630 173 STLYWV-ETQDGGAAKVE---VSPRDIIYTQPAEPVEGEE-PEI-LHK--------LDLRFRGVSWCDDSLALVQETWFK 238 (459)
Q Consensus 173 ~~l~~~-~~~d~g~~~~~---~~~~~~l~~~~~~pf~g~~-~~~-L~~--------~~~~~~~~~Ws~D~~al~~~~~~~ 238 (459)
+|+.+ |..-.++.... ....-.|+..+. . ++++ .++ .+. .....+.+.+-+|+..|+-++.+.
T Consensus 160 -~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~-~-~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 160 -TLFAAMESPLKQDGPRANPDNGSPLRILRYDP-K-TPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred -EEEEEECccccCCCcccccccCceEEEEEecC-C-CCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence 44433 33311221111 111134555554 1 1111 222 122 234467788888876777666422
Q ss_pred ---CccEEEEEEcCCC
Q 012630 239 ---TTQTRTWLISPGS 251 (459)
Q Consensus 239 ---~~~~~ly~v~~~~ 251 (459)
....+||.+++..
T Consensus 237 ~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 237 PGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCccceEEEEEEEccc
Confidence 3577899998753
No 174
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.48 E-value=20 Score=39.13 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=48.1
Q ss_pred cceEEEcC---CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 75 TQLVLATL---DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 75 sqL~~v~~---~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
+-|-+.|+ .-=.++|++ .+-+.-+.|+|++.+||--.. ...+-||+.++.+.+.+.-. .
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR-------------DK~vkiWd~t~~~~~~~~tI--n-- 261 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR-------------DKMVKIWDMTDSRAKPKHTI--N-- 261 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC-------------CccEEEEeccCCCccceeEE--e--
Confidence 44455555 222345666 455678999999999976642 36678999876544322211 1
Q ss_pred ccccccccccceeeeEEecCCCceEEE
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYW 177 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~ 177 (459)
....+.-+.|+|+-++.|+-
T Consensus 262 -------Tiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 262 -------TIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred -------ecceeeeeeeccCccchhhh
Confidence 11233467999999976653
No 175
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=64.26 E-value=1.4e+02 Score=28.62 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=30.3
Q ss_pred eeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeee
Q 012630 86 VKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLC 143 (459)
Q Consensus 86 ~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt 143 (459)
.++|.. ....++++|.||.+.|+.+.+. +..++.++.+|+.++.+.
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~ 60 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIP 60 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEe
Confidence 445544 3347999999999998887643 356778889888777664
No 176
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=63.86 E-value=1.1e+02 Score=31.86 Aligned_cols=115 Identities=18% Similarity=0.264 Sum_probs=47.4
Q ss_pred CCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEec-----------cCCccccccC
Q 012630 123 TKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQ-----------DGGAAKVEVS 191 (459)
Q Consensus 123 ~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~-----------d~g~~~~~~~ 191 (459)
.++.+.+.+||....+..|.-+++-...+|+ ++.|..|-.+.--|+.+. +.|...
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL----------EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~---- 283 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL----------EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA---- 283 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEE----------EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE----
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceE----------EEEecCCCCccceEEEEeccceEEEEEEcCCCCee----
Confidence 3566999999998888777767654444443 344444433434444322 111110
Q ss_pred CCCeEEeccCCCCCCCCceEecc-------ccceeccceeCCCCcEEEEEeecCCccEEEEEEcCCCCCCCceEE
Q 012630 192 PRDIIYTQPAEPVEGEEPEILHK-------LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLISPGSKDTAPLIL 259 (459)
Q Consensus 192 ~~~~l~~~~~~pf~g~~~~~L~~-------~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~~~~~~~~~l 259 (459)
...+-.++.++.++ -.|.. .+.-+..|.-|-|+..|+...|. .+ ++.++|+.+. ..|++.
T Consensus 284 -a~kVi~ip~~~v~~---~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~-~G--dvrqYDISDP-~~Pkl~ 350 (461)
T PF05694_consen 284 -AEKVIDIPAKKVEG---WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL-HG--DVRQYDISDP-FNPKLV 350 (461)
T ss_dssp -EEEEEEE--EE--S---S---GGGGGG-EE------EEE-TTS-EEEEEETT-TT--EEEEEE-SST-TS-EEE
T ss_pred -eeEEEECCCcccCc---ccccccccccccCCCceEeEEEccCCCEEEEEccc-CC--cEEEEecCCC-CCCcEE
Confidence 12333333311111 11211 12335667888887667666663 33 4666666554 346666
No 177
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=63.64 E-value=8.7 Score=37.03 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=29.5
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeec
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCE 144 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~ 144 (459)
.-++||||+..||+.... ..|.++|+.|.+...|..
T Consensus 47 Rkl~WSpD~tlLa~a~S~-------------G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAEST-------------GTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eEEEECCCCcEEEEEcCC-------------CeEEEEecccceeEEcCc
Confidence 579999999999998643 678899999988776654
No 178
>PRK13614 lipoprotein LpqB; Provisional
Probab=62.65 E-value=1.6e+02 Score=31.89 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=40.5
Q ss_pred eeeeEEecCCCceEEEEEeccCCccccccCCCCeEEe--ccCCCCCCCCceEeccc-----cceeccceeCCCC-cEEEE
Q 012630 162 MRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYT--QPAEPVEGEEPEILHKL-----DLRFRGVSWCDDS-LALVQ 233 (459)
Q Consensus 162 ~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~--~~~~pf~g~~~~~L~~~-----~~~~~~~~Ws~D~-~al~~ 233 (459)
+..+.-|+||- +++.+...+++ .+|++ +-. .-+| +|+.|+.. ......+.|..++ ++++.
T Consensus 436 I~~lrvSrDG~-R~Avi~~~~g~---------~~V~va~V~R-~~~G-~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 436 VKELRVSREGV-RALVISEQNGK---------SRVQVAGIVR-NEDG-TPRELTAPITLAADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred eEEEEECCCcc-EEEEEEEeCCc---------cEEEEEEEEe-CCCC-CeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence 67899999999 66655433332 12332 221 1144 77777642 1234558998876 44554
Q ss_pred EeecCCccEEEEEEcCC
Q 012630 234 ETWFKTTQTRTWLISPG 250 (459)
Q Consensus 234 ~~~~~~~~~~ly~v~~~ 250 (459)
... ..+..++.+.+.
T Consensus 504 ~~~--~~~~~~~~v~v~ 518 (573)
T PRK13614 504 ASA--TSNVVPELLSVD 518 (573)
T ss_pred ccC--CCcceEEEEEeC
Confidence 332 233345555553
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=61.86 E-value=1.2e+02 Score=30.65 Aligned_cols=138 Identities=14% Similarity=0.221 Sum_probs=77.5
Q ss_pred hhcceEEEcC-CCcee---ecC--CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccc
Q 012630 73 TTTQLVLATL-DGTVK---EFG--PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELP 146 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~---~l~--~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p 146 (459)
-..+||+.|+ +=+.- ..+ .+.....+++|+.+.||+|-..+ -..++.|||+.. .+.++-..
T Consensus 104 Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-----------t~GdV~l~d~~n--l~~v~~I~ 170 (391)
T KOG2110|consen 104 LEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-----------TSGDVVLFDTIN--LQPVNTIN 170 (391)
T ss_pred EcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-----------CCceEEEEEccc--ceeeeEEE
Confidence 3456888887 32222 112 23445678888888999887533 257889998642 22222221
Q ss_pred ccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc--ccceecccee
Q 012630 147 LVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK--LDLRFRGVSW 224 (459)
Q Consensus 147 ~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~--~~~~~~~~~W 224 (459)
.. .....-+.+++||. .|+-+ .+.|. .|.+... | +|....++-. ...++..+++
T Consensus 171 aH----------~~~lAalafs~~G~-llATA--SeKGT---------VIRVf~v-~-~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 171 AH----------KGPLAALAFSPDGT-LLATA--SEKGT---------VIRVFSV-P-EGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ec----------CCceeEEEECCCCC-EEEEe--ccCce---------EEEEEEc-C-CccEeeeeeCCceeeEEEEEEE
Confidence 11 22445789999998 66632 23332 3334443 2 2312222211 1334566899
Q ss_pred CCCCcEEEEEeecCCccEEEEEEcC
Q 012630 225 CDDSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 225 s~D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
++|+..|.... ++...|++.++-
T Consensus 227 s~ds~~L~~sS--~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 227 SPDSQFLAASS--NTETVHIFKLEK 249 (391)
T ss_pred CCCCCeEEEec--CCCeEEEEEecc
Confidence 99987666554 366788888863
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.85 E-value=20 Score=40.71 Aligned_cols=144 Identities=19% Similarity=0.318 Sum_probs=80.6
Q ss_pred hhcceEEEcCCCceeecCC-----CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc-eeeeeeccc
Q 012630 73 TTTQLVLATLDGTVKEFGP-----PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK-FVRQLCELP 146 (459)
Q Consensus 73 ~~sqL~~v~~~G~~~~l~~-----~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~-~~~~lt~~p 146 (459)
..++|+++|+..-..+++- +..+..++|.=.=++|+..... ....-|||+..+ .+-.++..+
T Consensus 137 ~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~ 204 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTP 204 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCC
Confidence 4589999999555555554 2344566666666666544311 236788998744 233333322
Q ss_pred ccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCC
Q 012630 147 LVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCD 226 (459)
Q Consensus 147 ~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~ 226 (459)
.+.....+.|.||.. +.+++...|...+ .|-.+|. =|...-.+.+..-...+-.+.|++
T Consensus 205 -----------~~~~~S~l~WhP~~a-Tql~~As~dd~~P--------viqlWDl-R~assP~k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 205 -----------GRMHCSVLAWHPDHA-TQLLVASGDDSAP--------VIQLWDL-RFASSPLKILEGHQRGILSLSWCP 263 (1049)
T ss_pred -----------CccceeeeeeCCCCc-eeeeeecCCCCCc--------eeEeecc-cccCCchhhhcccccceeeeccCC
Confidence 123455889999998 6666665544433 3444553 334322333433344466689987
Q ss_pred -CCcEEEEEeecCCccEEEEEEcCCCCC
Q 012630 227 -DSLALVQETWFKTTQTRTWLISPGSKD 253 (459)
Q Consensus 227 -D~~al~~~~~~~~~~~~ly~v~~~~~~ 253 (459)
|...+++... | .+++.-++.++|
T Consensus 264 ~D~~lllSsgk-D---~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 264 QDPRLLLSSGK-D---NRIICWNPNTGE 287 (1049)
T ss_pred CCchhhhcccC-C---CCeeEecCCCce
Confidence 4455555432 2 236666776643
No 181
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.48 E-value=56 Score=31.31 Aligned_cols=121 Identities=11% Similarity=0.225 Sum_probs=68.7
Q ss_pred eecccCCC-CCeEEEEEeccCcccccccCCCCcceEEEecC-CceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 96 TAVEPSPD-QKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 96 ~~~~~SPD-G~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.++++||= -.+||+.+.. -|-. ....+++|.+++ ++.+.........| +.-++.|++....
T Consensus 12 ysvqfSPf~~nrLavAt~q---~yGl---~G~G~L~ile~~~~~gi~e~~s~d~~D-----------~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQ---HYGL---AGNGRLFILEVTDPKGIQECQSYDTED-----------GLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehh---hccc---ccCceEEEEecCCCCCeEEEEeeeccc-----------ceeEeeecCCCcc
Confidence 47889994 3456555422 1110 125789999885 55555555543333 4458899999885
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc-cceeccceeCC-CCcEEEEEeecCCccEEEEEEcC
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL-DLRFRGVSWCD-DSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~-~~~~~~~~Ws~-D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
+++ +.. ||. .|...+. ++.. .|...++. ....-.+.|++ ++..++...| +...+||.-+.
T Consensus 75 ~~~-~a~---GDG--------SLrl~d~-~~~s-~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW--D~TiKLW~~~r 136 (311)
T KOG0277|consen 75 QVI-AAS---GDG--------SLRLFDL-TMPS-KPIHKFKEHKREVYSVDWNTVRRRIFLTSSW--DGTIKLWDPNR 136 (311)
T ss_pred eEE-EEe---cCc--------eEEEecc-CCCC-cchhHHHhhhhheEEeccccccceeEEeecc--CCceEeecCCC
Confidence 555 322 221 3444454 3343 44444432 32355688986 5677776676 45577777654
No 182
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=60.22 E-value=1.9e+02 Score=31.38 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.7
Q ss_pred CceeeecccCCCCCeEEEEEec
Q 012630 92 PAIYTAVEPSPDQKYILITSID 113 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~ 113 (459)
...++..+.||||+.|++.+..
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~ 403 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS 403 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc
Confidence 5677899999999999999743
No 183
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=59.83 E-value=9.4 Score=31.58 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=14.9
Q ss_pred eecccCCCCCeEEEEEec
Q 012630 96 TAVEPSPDQKYILITSID 113 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~ 113 (459)
.--.|||||++|.|+-+.
T Consensus 71 HvHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 71 HVHVFSPDGSWLSFTYND 88 (122)
T ss_pred cceEECCCCCEEEEEecc
Confidence 456899999999999654
No 184
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=59.38 E-value=31 Score=37.32 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=62.6
Q ss_pred eecCCCceeeecccCCCCCeEEEEEe--ccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceee
Q 012630 87 KEFGPPAIYTAVEPSPDQKYILITSI--DRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRL 164 (459)
Q Consensus 87 ~~l~~~~~~~~~~~SPDG~~l~~~~~--~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~ 164 (459)
+..+.+..+..+..||+|+.||-... ...+ ..|.+|+.+.-...+ .++.. +-.+-.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh----------AvI~lw~t~~W~~~~--~L~~H----------sLTVT~ 577 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEH----------AVIRLWNTANWLQVQ--ELEGH----------SLTVTR 577 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccc----------eEEEEEeccchhhhh--eeccc----------ceEEEE
Confidence 34455666789999999998866542 1233 345777654322211 11111 123446
Q ss_pred eEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecccccee----ccceeCCCCcEEEEEeecCCc
Q 012630 165 ISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRF----RGVSWCDDSLALVQETWFKTT 240 (459)
Q Consensus 165 ~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~----~~~~Ws~D~~al~~~~~~~~~ 240 (459)
+.|||||+ .|.-+. .|.- -.||...- --.+ +-+ +.....+ -...|+||+..|+... ++.
T Consensus 578 l~FSpdg~-~LLsvs-RDRt---------~sl~~~~~-~~~~-e~~--fa~~k~HtRIIWdcsW~pde~~FaTaS--RDK 640 (764)
T KOG1063|consen 578 LAFSPDGR-YLLSVS-RDRT---------VSLYEVQE-DIKD-EFR--FACLKAHTRIIWDCSWSPDEKYFATAS--RDK 640 (764)
T ss_pred EEECCCCc-EEEEee-cCce---------EEeeeeec-ccch-hhh--hccccccceEEEEcccCcccceeEEec--CCc
Confidence 79999999 444331 1111 12333211 0001 111 1111122 3356788887777655 356
Q ss_pred cEEEEEEcC
Q 012630 241 QTRTWLISP 249 (459)
Q Consensus 241 ~~~ly~v~~ 249 (459)
...+|..+-
T Consensus 641 ~VkVW~~~~ 649 (764)
T KOG1063|consen 641 KVKVWEEPD 649 (764)
T ss_pred eEEEEeccC
Confidence 677888753
No 185
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.75 E-value=57 Score=33.88 Aligned_cols=95 Identities=14% Similarity=0.275 Sum_probs=56.6
Q ss_pred cCCceeeeeecccccccccccccccccce-eeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEe
Q 012630 134 ADGKFVRQLCELPLVENIPIAYNSVREGM-RLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEIL 212 (459)
Q Consensus 134 ~~g~~~~~lt~~p~~~~~P~~~~~~~~~~-r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L 212 (459)
..|+..-.++..|. +..|++|+....|+ +++.+|+|.+ .|+..+... .|-.+.. -|.++...
T Consensus 41 rSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~------------~v~f~nf---~~d~~~l~ 103 (657)
T KOG2377|consen 41 RSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSK------------TVDFCNF---IPDNSQLE 103 (657)
T ss_pred ecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcc-eEEEEecCc------------eEEEEec---CCCchhhH
Confidence 34555556666554 66799998888775 9999999999 676544211 1111111 22233322
Q ss_pred c-c---c-cceeccceeCCC-CcEEEEEeecCCccEEEEEEcCC
Q 012630 213 H-K---L-DLRFRGVSWCDD-SLALVQETWFKTTQTRTWLISPG 250 (459)
Q Consensus 213 ~-~---~-~~~~~~~~Ws~D-~~al~~~~~~~~~~~~ly~v~~~ 250 (459)
. . . ...+-|..|+.. .+||+... ..++|.+.+.
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~~~-----G~e~y~v~pe 142 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSSTEIAFITDQ-----GIEFYQVLPE 142 (657)
T ss_pred HHHHhccCcceeEEEEEecCeeEEEEecC-----CeEEEEEchh
Confidence 1 1 1 223667899876 58888643 3458888765
No 186
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=58.33 E-value=90 Score=34.36 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=39.1
Q ss_pred ceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCc
Q 012630 161 GMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTT 240 (459)
Q Consensus 161 ~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~ 240 (459)
.+-.++.||||+ .|+.. -.|. .-.||-+|.--| --.|+.-....-.+.-|+|+..++... .++
T Consensus 510 dvL~v~~Spdgk-~LaVs-LLdn---------TVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgS--ADK 572 (888)
T KOG0306|consen 510 DVLCVSVSPDGK-LLAVS-LLDN---------TVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGS--ADK 572 (888)
T ss_pred cEEEEEEcCCCc-EEEEE-eccC---------eEEEEEecceee----eeeecccccceeEEeccCCcCeEEecc--CCC
Confidence 344779999999 55533 2222 224555543000 111222222233356688887777654 257
Q ss_pred cEEEEEEcCC
Q 012630 241 QTRTWLISPG 250 (459)
Q Consensus 241 ~~~ly~v~~~ 250 (459)
+.++|=++-.
T Consensus 573 nVKiWGLdFG 582 (888)
T KOG0306|consen 573 NVKIWGLDFG 582 (888)
T ss_pred ceEEeccccc
Confidence 7788877653
No 187
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=58.15 E-value=23 Score=36.11 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=52.5
Q ss_pred hcceEEEcC-CCceee--cCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC--Cceeeeeecccc
Q 012630 74 TTQLVLATL-DGTVKE--FGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD--GKFVRQLCELPL 147 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~--l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~--g~~~~~lt~~p~ 147 (459)
.+-|.+.|+ +=.... +-. ...+..++|||.-..|+.++. +.+++.|||+. |++.. ....
T Consensus 294 D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg------------~D~rl~vWDls~ig~eq~---~eda 358 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG------------TDRRLNVWDLSRIGEEQS---PEDA 358 (422)
T ss_pred CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc------------cCCcEEEEeccccccccC---hhhh
Confidence 345566665 322222 222 456679999999999998873 46889999976 33221 1111
Q ss_pred ccccc---ccccccccceeeeEEecCCCceEEEE
Q 012630 148 VENIP---IAYNSVREGMRLISWRADRPSTLYWV 178 (459)
Q Consensus 148 ~~~~P---~~~~~~~~~~r~~~WspDg~~~l~~~ 178 (459)
.++.| ..+.+=...+..|.|.|..+++|.-+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV 392 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence 22222 11222334467899999999666544
No 188
>PRK13604 luxD acyl transferase; Provisional
Probab=57.66 E-value=14 Score=36.50 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=24.8
Q ss_pred EEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcC
Q 012630 404 KYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYP 439 (459)
Q Consensus 404 ~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp 439 (459)
..++.||.+|.|||.+|.+-+. + +.|+||.+..
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~~~-~--~~~~vIi~HG 45 (307)
T PRK13604 13 VICLENGQSIRVWETLPKENSP-K--KNNTILIASG 45 (307)
T ss_pred eEEcCCCCEEEEEEEcCcccCC-C--CCCEEEEeCC
Confidence 4578899999999999985332 2 6788887643
No 189
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=56.82 E-value=1.3e+02 Score=30.04 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=45.4
Q ss_pred ccceeeeEEecCCCceEEEEEeccCCccc---cccCCCCeEEeccCCCCCCC------------CceEeccccce-eccc
Q 012630 159 REGMRLISWRADRPSTLYWVETQDGGAAK---VEVSPRDIIYTQPAEPVEGE------------EPEILHKLDLR-FRGV 222 (459)
Q Consensus 159 ~~~~r~~~WspDg~~~l~~~~~~d~g~~~---~~~~~~~~l~~~~~~pf~g~------------~~~~L~~~~~~-~~~~ 222 (459)
....+.+.+.||| .||+.- -+.++.. .....+..|+.++. +|. ...+++....| ..++
T Consensus 113 ~H~g~~l~fgpDG--~LYvs~-G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~ 186 (331)
T PF07995_consen 113 NHNGGGLAFGPDG--KLYVSV-GDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGL 186 (331)
T ss_dssp SS-EEEEEE-TTS--EEEEEE-B-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEE
T ss_pred CCCCccccCCCCC--cEEEEe-CCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccE
Confidence 4556789999998 466553 3444311 11234567888876 442 12233333333 4568
Q ss_pred eeCCC-CcEEEEEeecCCccEEEEEEcC
Q 012630 223 SWCDD-SLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 223 ~Ws~D-~~al~~~~~~~~~~~~ly~v~~ 249 (459)
+|.+. |..++.+... .....|.+|..
T Consensus 187 ~~d~~tg~l~~~d~G~-~~~dein~i~~ 213 (331)
T PF07995_consen 187 AFDPNTGRLWAADNGP-DGWDEINRIEP 213 (331)
T ss_dssp EEETTTTEEEEEEE-S-SSSEEEEEE-T
T ss_pred EEECCCCcEEEEccCC-CCCcEEEEecc
Confidence 99987 7777776532 35577888754
No 190
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=56.53 E-value=38 Score=36.49 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=39.5
Q ss_pred hcceEEEcC-CCc---eeecCC---CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeee
Q 012630 74 TTQLVLATL-DGT---VKEFGP---PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLC 143 (459)
Q Consensus 74 ~sqL~~v~~-~G~---~~~l~~---~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt 143 (459)
..+|..+.+ ++. ...+.. -..+..+..||||+||++.+.. .+|++|++.+.+-+.+.
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 356666666 332 222222 2345789999999999999743 78999999988887776
No 191
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=56.41 E-value=2.8e+02 Score=29.68 Aligned_cols=157 Identities=11% Similarity=0.149 Sum_probs=81.0
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-CceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
.+.+++|||-+.-|||=+-.. +..|.++-+..+- +.+++...-..+++- -+.|...|.
T Consensus 348 gIr~FswsP~~~llAYwtpe~--------~~~parvtL~evPs~~~iRt~nlfnVsDc-------------kLhWQk~gd 406 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPET--------NNIPARVTLMEVPSKREIRTKNLFNVSDC-------------KLHWQKSGD 406 (698)
T ss_pred cccCcccCCCcceEEEEcccc--------cCCcceEEEEecCccceeeeccceeeecc-------------EEEeccCCc
Confidence 357999999999999876321 1224445555443 233332211111221 469999999
Q ss_pred ceEEEEEeccCCccccccC-CCCeEEeccCCCCCCCCceEeccccceeccceeCCCC--cEEEEEeecCCccEEEEEEcC
Q 012630 173 STLYWVETQDGGAAKVEVS-PRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDS--LALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 173 ~~l~~~~~~d~g~~~~~~~-~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~--~al~~~~~~~~~~~~ly~v~~ 249 (459)
..-+.++.-.... ...- +.=+|+.+.- .. -|.........+-..+|-|.| +++++... .......|.+..
T Consensus 407 yLcvkvdR~tK~~--~~g~f~n~eIfrire---Kd-Ipve~velke~vi~FaWEP~gdkF~vi~g~~-~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 407 YLCVKVDRHTKSK--VKGQFSNLEIFRIRE---KD-IPVEVVELKESVIAFAWEPHGDKFAVISGNT-VKNTVSFYAVET 479 (698)
T ss_pred EEEEEEEeecccc--ccceEeeEEEEEeec---cC-CCceeeecchheeeeeeccCCCeEEEEEccc-cccceeEEEeec
Confidence 5555554322211 0000 1125666644 22 333333334445567898865 77776542 245667788764
Q ss_pred CCCCCCceEEe--ecCCCCccCCCCCCCeeeCCCCCEEEEE
Q 012630 250 GSKDTAPLILF--DRSSEDVYSDPGLPMMRKSSTGTRVIAK 288 (459)
Q Consensus 250 ~~~~~~~~~l~--d~~~~d~y~~pg~~~~~~~~dg~~v~~~ 288 (459)
. ...++++- +....+ -..++|.|++++..
T Consensus 480 ~--~~~~~lVk~~dk~~~N--------~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 480 N--IKKPSLVKELDKKFAN--------TVFWSPKGRFVVVA 510 (698)
T ss_pred C--CCchhhhhhhcccccc--------eEEEcCCCcEEEEE
Confidence 2 23455552 221100 23568888877543
No 192
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=56.10 E-value=24 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=23.5
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK 137 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~ 137 (459)
.+..++|||....||+.+.+ .++.|+-+++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~-------------g~v~v~Rl~~q 43 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTED-------------GEVLVYRLNWQ 43 (47)
T ss_pred cEEEEEECCCCCEEEEEECC-------------CeEEEEECCCc
Confidence 35689999999999998743 56777766553
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=55.96 E-value=49 Score=36.63 Aligned_cols=100 Identities=22% Similarity=0.327 Sum_probs=53.3
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC--ceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG--KFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g--~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.-.++||.|++||..-.. .+|.||.--| +..-..+ -+..=...+-.++||+||.
T Consensus 209 t~~~~spn~~~~Aa~d~d-------------GrI~vw~d~~~~~~~~t~t----------~lHWH~~~V~~L~fS~~G~- 264 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSD-------------GRILVWRDFGSSDDSETCT----------LLHWHHDEVNSLSFSSDGA- 264 (792)
T ss_pred eeEEeccccceEEEeccC-------------CcEEEEeccccccccccce----------EEEecccccceeEEecCCc-
Confidence 347899999998777432 5567774333 1111111 1111122334678888888
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCC--cEEEEE
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDS--LALVQE 234 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~--~al~~~ 234 (459)
.|+ .+|.+ ..+..+.. ..++++-|......+-.+.||+|+ .+++.+
T Consensus 265 ~Ll-----SGG~E-------~VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 265 YLL-----SGGRE-------GVLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred eEe-----ecccc-------eEEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEEec
Confidence 444 13211 22222322 223666666667677889999986 444444
No 194
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.62 E-value=83 Score=31.65 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=22.3
Q ss_pred ccceeCCCCcEEEEEeecCCccEEEEEEcCC
Q 012630 220 RGVSWCDDSLALVQETWFKTTQTRTWLISPG 250 (459)
Q Consensus 220 ~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~~ 250 (459)
..+.||-|...+++.. ++.+.++|...+.
T Consensus 319 ~~Vk~S~Dskyi~SGS--dd~nvRlWka~As 347 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGS--DDGNVRLWKAKAS 347 (433)
T ss_pred eEEEEeccccEEEecC--CCcceeeeecchh
Confidence 4578999988887765 5788899998754
No 195
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=55.56 E-value=2.5e+02 Score=28.76 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=39.4
Q ss_pred HhhcceEEEcC-CCc-eeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC
Q 012630 72 YTTTQLVLATL-DGT-VKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD 135 (459)
Q Consensus 72 ~~~sqL~~v~~-~G~-~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~ 135 (459)
...-.+.++++ +|+ ...|..+.++.+++|+-||.+|+-++.. ..+-|||..
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr 203 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPR 203 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCC
Confidence 35567788888 775 5568889999999999999999777633 567788854
No 196
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=55.22 E-value=43 Score=32.70 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=53.4
Q ss_pred hhcceEEEcC-CCcee--ecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC--Cceeeeeecc--
Q 012630 73 TTTQLVLATL-DGTVK--EFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD--GKFVRQLCEL-- 145 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~--~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~--g~~~~~lt~~-- 145 (459)
...|+-+.|+ +|.-. .-+..+.+..+.|||-..+++++.. -...+-+||+. .+-.+.+...
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgs------------aDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGS------------ADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecC------------CCceEEEEEeecccceeEEeecccC
Confidence 4457777777 67543 3344667789999999999999852 23556677742 3333333331
Q ss_pred ---cccccccccccccccceeeeEEecCCCceEE
Q 012630 146 ---PLVENIPIAYNSVREGMRLISWRADRPSTLY 176 (459)
Q Consensus 146 ---p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~ 176 (459)
|..+. ..+...-+.++.|+.||. .|+
T Consensus 234 k~~p~~~~----n~ah~gkvngla~tSd~~-~l~ 262 (397)
T KOG4283|consen 234 KRPPILKT----NTAHYGKVNGLAWTSDAR-YLA 262 (397)
T ss_pred ccCccccc----cccccceeeeeeecccch-hhh
Confidence 22221 124445567889999998 454
No 197
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=54.64 E-value=72 Score=34.96 Aligned_cols=115 Identities=15% Similarity=0.276 Sum_probs=63.8
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-CceeeeeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
...++.+++||+|+|++----.+ ..-+-||+++ -+.+..+.+ -..++.-..+||-
T Consensus 78 Rk~~t~vAfS~~GryvatGEcG~-----------~pa~kVw~la~h~vVAEfvd-------------HKY~vtcvaFsp~ 133 (1080)
T KOG1408|consen 78 RKPLTCVAFSQNGRYVATGECGR-----------TPASKVWSLAFHGVVAEFVD-------------HKYNVTCVAFSPG 133 (1080)
T ss_pred CcceeEEEEcCCCcEEEecccCC-----------Cccceeeeeccccchhhhhh-------------ccccceeeeecCC
Confidence 34567999999999986553111 1234677765 122222211 1235556789999
Q ss_pred CCceEEEEEeccCCccccccCCCCeEEec---cCCCCCCCCceEeccccceeccceeCCCCcEEEEEeecCCccEEEEEE
Q 012630 171 RPSTLYWVETQDGGAAKVEVSPRDIIYTQ---PAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 171 g~~~l~~~~~~d~g~~~~~~~~~~~l~~~---~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v 247 (459)
++ .|+-+..+ .|.|..+ .+ -..+ ...++ ..+.+.+.++.||..|+... .+|.++|-+
T Consensus 134 ~k-yvvSVGsQ-----------HDMIVnv~dWr~-N~~~-asnki---ss~Vsav~fsEdgSYfvT~g---nrHvk~wyl 193 (1080)
T KOG1408|consen 134 NK-YVVSVGSQ-----------HDMIVNVNDWRV-NSSG-ASNKI---SSVVSAVAFSEDGSYFVTSG---NRHVKLWYL 193 (1080)
T ss_pred Cc-EEEeeccc-----------cceEEEhhhhhh-cccc-ccccc---ceeEEEEEEccCCceeeeee---eeeEEEEEe
Confidence 88 55544322 1222111 11 0012 22222 23456678899998888765 477888888
Q ss_pred cCC
Q 012630 248 SPG 250 (459)
Q Consensus 248 ~~~ 250 (459)
+..
T Consensus 194 ~~~ 196 (1080)
T KOG1408|consen 194 QIQ 196 (1080)
T ss_pred ecc
Confidence 754
No 198
>PLN02442 S-formylglutathione hydrolase
Probab=52.90 E-value=24 Score=34.19 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=30.9
Q ss_pred CceEEEEEECC-CCcEEEEEEEccCCCCCCCCCCceEEEEEcC
Q 012630 398 LQKELIKYQRK-DGVQLTAKLYLPTGYDPSKDGHLLCLFWAYP 439 (459)
Q Consensus 398 ~~~E~i~yks~-DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp 439 (459)
+..+.++|.|. =|.++.-.+|+|++ .+++ +||+|+++-.
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~--~~Pvv~~lHG 55 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPA-SDSG--KVPVLYWLSG 55 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCc-ccCC--CCCEEEEecC
Confidence 56777788774 78899999999994 3344 8999999876
No 199
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=52.80 E-value=38 Score=36.64 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=22.8
Q ss_pred CEEEEEeecCCCCcc--eEEEECC-Ccceeeccc
Q 012630 357 LKILTSKESKTEITQ--YWIQSWP-HKKCRQITD 387 (459)
Q Consensus 357 ~~i~~~~~s~~~P~e--ly~~~~~-~g~~~~LT~ 387 (459)
.++++-..+-..|-| ||+.... .|+.+|||.
T Consensus 515 ~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~ 548 (867)
T KOG2281|consen 515 RKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTE 548 (867)
T ss_pred ceEEEEEccCCCCceeeEEEEEEecCCceeeccC
Confidence 467776777777765 8887776 588888886
No 200
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=52.47 E-value=35 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHhhcceEEEcCCCceeecCCC-ceeeecccCCCCCeEEEEE
Q 012630 71 HYTTTQLVLATLDGTVKEFGPP-AIYTAVEPSPDQKYILITS 111 (459)
Q Consensus 71 ~~~~sqL~~v~~~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~ 111 (459)
...++.+.-.| +++.+.+... ....++..|||+|+|.+.+
T Consensus 32 ~~~~~~Vvyyd-~~~~~~va~g~~~aNGI~~s~~~k~lyVa~ 72 (86)
T PF01731_consen 32 GLPWGNVVYYD-GKEVKVVASGFSFANGIAISPDKKYLYVAS 72 (86)
T ss_pred cCCCceEEEEe-CCEeEEeeccCCCCceEEEcCCCCEEEEEe
Confidence 34667777777 5566665554 2335899999999997775
No 201
>PRK13615 lipoprotein LpqB; Provisional
Probab=52.36 E-value=3e+02 Score=29.73 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=41.4
Q ss_pred ceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEe--ccCCCCCCCCceEe-cc------ccceeccceeCCCC-cE
Q 012630 161 GMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYT--QPAEPVEGEEPEIL-HK------LDLRFRGVSWCDDS-LA 230 (459)
Q Consensus 161 ~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~--~~~~pf~g~~~~~L-~~------~~~~~~~~~Ws~D~-~a 230 (459)
.+..+.-|+||- +++.+-..+++ .+|++ +-. +|+.|+.| +. .......+.|..|+ ++
T Consensus 418 ~I~~lrvSrDG~-R~Avi~~~~g~---------~~V~va~V~R---~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 418 RVVSLEVARDGA-RVLVQLETGAG---------PQLLVASIVR---DGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred eeEEEEeCCCcc-EEEEEEecCCC---------CEEEEEEEEe---CCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 467889999999 66655322222 23333 322 23456666 32 12234558898775 66
Q ss_pred EEEEeecCCccEEEEEEcCCC
Q 012630 231 LVQETWFKTTQTRTWLISPGS 251 (459)
Q Consensus 231 l~~~~~~~~~~~~ly~v~~~~ 251 (459)
++.... .....++.+.+.+
T Consensus 485 Vl~~~~--~~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAP--DGERQVELHQVGG 503 (557)
T ss_pred EEeccC--CCCceEEEEECCC
Confidence 776332 2333466666654
No 202
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=52.34 E-value=1.2e+02 Score=29.78 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=56.9
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
..++.++|||.-..++..+ | ....+-+|+++- +.. .|+...+....+-...|+.||
T Consensus 28 DsIS~l~FSP~~~~~~~A~-----S-------WD~tVR~wevq~~g~~-----------~~ka~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAG-----S-------WDGTVRIWEVQNSGQL-----------VPKAQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred cchheeEeccccCceEEec-----c-------cCCceEEEEEecCCcc-----------cchhhhccCCCeEEEEEccCC
Confidence 4568999999555554332 2 346777787642 111 122223334455688999998
Q ss_pred CceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCC--CcEEEEEee
Q 012630 172 PSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDD--SLALVQETW 236 (459)
Q Consensus 172 ~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D--~~al~~~~~ 236 (459)
. .+|+..-|+ ++.++|+ ..+...++..-+....-+.|=+. -..|+...|
T Consensus 85 s--kVf~g~~Dk-----------~~k~wDL---~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW 135 (347)
T KOG0647|consen 85 S--KVFSGGCDK-----------QAKLWDL---ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSW 135 (347)
T ss_pred c--eEEeeccCC-----------ceEEEEc---cCCCeeeeeecccceeEEEEecCCCcceeEeccc
Confidence 5 455543333 3334444 32366666544444555677433 245555554
No 203
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=50.94 E-value=67 Score=32.67 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=31.6
Q ss_pred cceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-ccceeccceeCCCCcEEEE
Q 012630 160 EGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRFRGVSWCDDSLALVQ 233 (459)
Q Consensus 160 ~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~~~~~Ws~D~~al~~ 233 (459)
..+-.+.|+||+. .++... .-+.++.+|+ ..|....+.. -.....+++|.|-+.++..
T Consensus 124 ~diydL~Ws~d~~-~l~s~s------------~dns~~l~Dv---~~G~l~~~~~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 124 DDIYDLAWSPDSN-FLVSGS------------VDNSVRLWDV---HAGQLLAILDDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred cchhhhhccCCCc-eeeeee------------ccceEEEEEe---ccceeEeeccccccccceeecchhhhhhhh
Confidence 3455789999988 454332 1234555555 2123333332 2334567899886555543
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=50.35 E-value=37 Score=37.03 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=22.2
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF 138 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~ 138 (459)
..+.||||-+.++|-.. ..++.++|.+|.-
T Consensus 160 ~hv~ws~D~~~~Lf~~a-------------nge~hlydnqgnF 189 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKA-------------NGETHLYDNQGNF 189 (1189)
T ss_pred cceeecccHHHHHhhhc-------------CCcEEEecccccH
Confidence 47999999999988742 3566777776653
No 205
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=49.98 E-value=89 Score=34.76 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=39.9
Q ss_pred hcceEEEcC-CC-ceeecCCC-ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeec
Q 012630 74 TTQLVLATL-DG-TVKEFGPP-AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCE 144 (459)
Q Consensus 74 ~sqL~~v~~-~G-~~~~l~~~-~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~ 144 (459)
.+++.+.++ .+ ...-|-.. +.+++++|.-||..|+.+... ...+.+||++++....++.
T Consensus 223 ~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~------------~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 223 NGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS------------NGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred CceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC------------CceEEEEEcCCCeeeeeee
Confidence 345555555 23 33344443 677899999999999988632 3667899999877665554
No 206
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=49.54 E-value=2.3e+02 Score=28.61 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=20.1
Q ss_pred ccceeCCCCcEEEEEeecC---------------CccEEEEEEcCCCC
Q 012630 220 RGVSWCDDSLALVQETWFK---------------TTQTRTWLISPGSK 252 (459)
Q Consensus 220 ~~~~Ws~D~~al~~~~~~~---------------~~~~~ly~v~~~~~ 252 (459)
.++.|++||..++...... .....+|+++++++
T Consensus 127 ~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 127 NSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred cCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 4689999986655433100 01246888888754
No 207
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.30 E-value=1.3e+02 Score=29.52 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=49.5
Q ss_pred hcceEEEcCCCceee---cCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 74 TTQLVLATLDGTVKE---FGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 74 ~sqL~~v~~~G~~~~---l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
+=.+|-|.-+|...+ ....+-+.++.||-||..++... -..++-+||++.+.+.++...
T Consensus 51 tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-------------~Dk~~k~wDL~S~Q~~~v~~H----- 112 (347)
T KOG0647|consen 51 TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-------------CDKQAKLWDLASGQVSQVAAH----- 112 (347)
T ss_pred ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------------cCCceEEEEccCCCeeeeeec-----
Confidence 334554443443332 12244456999999997764443 237789999998888877653
Q ss_pred ccccccccccceeeeEEecCCCceEEE
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYW 177 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~ 177 (459)
..++|..+|-+.....++.
T Consensus 113 --------d~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 113 --------DAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred --------ccceeEEEEecCCCcceeE
Confidence 2356788898886654543
No 208
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=49.19 E-value=2.8e+02 Score=27.49 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=54.6
Q ss_pred CcEEEEEcCCCCCCCCcceEEEEECCCCceEEEeecCcc--------------cceEEEEEeecCCCccccccCCCEEEE
Q 012630 296 GTYILLNGRGATPEGDVPFLDLFNINTGSKERIWESDKE--------------KYYETAVALNLDQSVGDVNLNQLKILT 361 (459)
Q Consensus 296 ~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~~l~~~~~~--------------~~~e~~~~~~~~~~~~~~~~d~~~i~~ 361 (459)
++.+|+..++....+..|+|.++++. |....-+.-+.. ..+|.+. ++.++.++++
T Consensus 95 ~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la----------~~~dG~~l~~ 163 (326)
T PF13449_consen 95 DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA----------VSPDGRTLFA 163 (326)
T ss_pred CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE----------ECCCCCEEEE
Confidence 33566665554444557899999987 554322211100 0233332 3445667888
Q ss_pred EeecCC-CCcceEEEECCCcceeecccccCCCCCCcCCceEEEEEECC------CCcEEEEEEEccC
Q 012630 362 SKESKT-EITQYWIQSWPHKKCRQITDFPHPYPLLSTLQKELIKYQRK------DGVQLTAKLYLPT 421 (459)
Q Consensus 362 ~~~s~~-~P~ely~~~~~~g~~~~LT~~~~~~~~~~~~~~E~i~yks~------DG~~l~g~L~lP~ 421 (459)
..|++. ..+...-. .++...+|..+...-. .....++.|+-. .+..|...+.+|.
T Consensus 164 ~~E~~l~~d~~~~~~--~~~~~~ri~~~d~~~~---~~~~~~~~y~ld~~~~~~~~~~isd~~al~d 225 (326)
T PF13449_consen 164 AMESPLKQDGPRANP--DNGSPLRILRYDPKTP---GEPVAEYAYPLDPPPTAPGDNGISDIAALPD 225 (326)
T ss_pred EECccccCCCccccc--ccCceEEEEEecCCCC---CccceEEEEeCCccccccCCCCceeEEEECC
Confidence 888772 22221111 1333455555432111 112555666654 4666777777764
No 209
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=48.91 E-value=73 Score=34.84 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=61.6
Q ss_pred ccccccc--ceeEe-cCCcEEEEEeeCCCCCCCCCCCCCCCCe-EeecCCCcccccccccccCCChhhHHHHHHHhhcce
Q 012630 2 CLNAVFG--SFVWV-NSSVLLVYTIPLSRGDSPKKSLVPFGPK-IQSNEQQNVIQNRYTEGLLKDEFDEYLFEHYTTTQL 77 (459)
Q Consensus 2 ~~n~~~~--~~~w~-d~~~l~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~~~~~~rt~~d~l~~~~D~~~f~~~~~sqL 77 (459)
.++..++ +++|+ +|+.|+...... .+...+.++-. +...+ .+-...+|-.++-.+ ++.++.-++...|
T Consensus 15 s~epiYtGG~~~~s~nG~~L~t~~~d~-----Vi~idv~t~~~~l~s~~-~ed~d~ita~~l~~d--~~~L~~a~rs~ll 86 (775)
T KOG0319|consen 15 SLEPIYTGGPVAWSSNGQHLYTACGDR-----VIIIDVATGSIALPSGS-NEDEDEITALALTPD--EEVLVTASRSQLL 86 (775)
T ss_pred cccceecCCceeECCCCCEEEEecCce-----EEEEEccCCceecccCC-ccchhhhheeeecCC--ccEEEEeeccceE
Confidence 3555553 89999 999888763110 00001111111 11111 121134444444333 4666666666777
Q ss_pred EEEcC-CCceee-cCC--CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce
Q 012630 78 VLATL-DGTVKE-FGP--PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF 138 (459)
Q Consensus 78 ~~v~~-~G~~~~-l~~--~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~ 138 (459)
-++++ +|+... +.. .+-.....++|-| .|+.+- +-...+-|||..++.
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtg------------gaD~~v~VWdi~~~~ 138 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATG------------GADGRVKVWDIKNGY 138 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEec------------cccceEEEEEeeCCE
Confidence 77788 775443 322 3334578899999 444432 234677899987554
No 210
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=48.24 E-value=2.6e+02 Score=26.89 Aligned_cols=108 Identities=16% Similarity=0.212 Sum_probs=62.1
Q ss_pred ceeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceee
Q 012630 85 TVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRL 164 (459)
Q Consensus 85 ~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~ 164 (459)
+..-|....++..+.+|-|.++|+--.. ..-+-|+|++ ..+..|.-+..-..++|.
T Consensus 93 elhsf~hkhivk~~af~~ds~~lltgg~-------------ekllrvfdln-----------~p~App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 93 ELHSFEHKHIVKAVAFSQDSNYLLTGGQ-------------EKLLRVFDLN-----------RPKAPPKEISGHTGGIRT 148 (334)
T ss_pred hhhhhhhhheeeeEEecccchhhhccch-------------HHHhhhhhcc-----------CCCCCchhhcCCCCccee
Confidence 4445555677788999999998854432 1223344443 234456666777788999
Q ss_pred eEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEE
Q 012630 165 ISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALV 232 (459)
Q Consensus 165 ~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~ 232 (459)
+.|--..+ .|.-. +.|+ .|.++|. -+| ...+-.........+..+.||..|.
T Consensus 149 v~wc~eD~-~iLSS-add~-----------tVRLWD~--rTg-t~v~sL~~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 149 VLWCHEDK-CILSS-ADDK-----------TVRLWDH--RTG-TEVQSLEFNSPVTSLEVSQDGRILT 200 (334)
T ss_pred EEEeccCc-eEEee-ccCC-----------ceEEEEe--ccC-cEEEEEecCCCCcceeeccCCCEEE
Confidence 99987766 44432 3222 2444443 134 4333333454556677778874444
No 211
>PRK13615 lipoprotein LpqB; Provisional
Probab=46.74 E-value=2.6e+02 Score=30.25 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=37.3
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEE--EecCCceeeee-ecccccccccccccccccceeeeEEe
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQV--WTADGKFVRQL-CELPLVENIPIAYNSVREGMRLISWR 168 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v--~d~~g~~~~~l-t~~p~~~~~P~~~~~~~~~~r~~~Ws 168 (459)
++.++.+++|+||-++|++.... ...+++| +-..|+..+.| +.. +.+.. +.. .+.++.|.
T Consensus 416 ~~~I~~lrvSrDG~R~Avi~~~~----------g~~~V~va~V~R~~~~P~~L~~~p-----~~l~~-~l~-~v~sl~W~ 478 (557)
T PRK13615 416 TGRVVSLEVARDGARVLVQLETG----------AGPQLLVASIVRDGGVPTSLTTTP-----LELLA-SPG-TPLDATWV 478 (557)
T ss_pred CCeeEEEEeCCCccEEEEEEecC----------CCCEEEEEEEEeCCCcceEeeecc-----EEccc-CcC-cceeeEEc
Confidence 34678999999999999996421 1133444 22234444455 331 01111 112 66789999
Q ss_pred cCCC
Q 012630 169 ADRP 172 (459)
Q Consensus 169 pDg~ 172 (459)
.|+.
T Consensus 479 ~~~~ 482 (557)
T PRK13615 479 DELD 482 (557)
T ss_pred CCCE
Confidence 9966
No 212
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=46.51 E-value=34 Score=32.96 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=31.2
Q ss_pred CceEEEEEECC-CCcEEEEEEEccCCCCCCCCCCceEEEEEcCC
Q 012630 398 LQKELIKYQRK-DGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPG 440 (459)
Q Consensus 398 ~~~E~i~yks~-DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~ 440 (459)
++.+..++++. -|.++.-.+|+|++++. + ++|+|+++...
T Consensus 11 ~~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~--~~P~vvllHG~ 51 (275)
T TIGR02821 11 GTQGFYRHKSETCGVPMTFGVFLPPQAAA-G--PVPVLWYLSGL 51 (275)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCCccC-C--CCCEEEEccCC
Confidence 46677777776 77899999999998753 3 68999987653
No 213
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=46.21 E-value=78 Score=25.11 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=40.5
Q ss_pred ecccCCCCCeEEEEEeccCccc-----ccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 97 AVEPSPDQKYILITSIDRPYSF-----TVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 97 ~~~~SPDG~~l~~~~~~~p~s~-----~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
++.+++|+..|.|+-....|.. .+--.+-..++..+|...++++.|.+. -..+.+++-|+|+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-------------L~fpNGVals~d~ 68 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-------------LYFPNGVALSPDE 68 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-------------ESSEEEEEE-TTS
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-------------CCccCeEEEcCCC
Confidence 5677889778888864332222 111133358899999998888776552 1244578999999
Q ss_pred CceEEEEEe
Q 012630 172 PSTLYWVET 180 (459)
Q Consensus 172 ~~~l~~~~~ 180 (459)
. .|+++|.
T Consensus 69 ~-~vlv~Et 76 (89)
T PF03088_consen 69 S-FVLVAET 76 (89)
T ss_dssp S-EEEEEEG
T ss_pred C-EEEEEec
Confidence 9 6777764
No 214
>PRK02888 nitrous-oxide reductase; Validated
Probab=46.09 E-value=43 Score=36.33 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=34.1
Q ss_pred hhcceEEEcC-C----C-c-eeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC
Q 012630 73 TTTQLVLATL-D----G-T-VKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG 136 (459)
Q Consensus 73 ~~sqL~~v~~-~----G-~-~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g 136 (459)
....+.+||. + | + ...+.-+....++.+||||+||++.. .....+-|+|++.
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan------------klS~tVSVIDv~k 352 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG------------KLSPTVTVIDVRK 352 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC------------CCCCcEEEEEChh
Confidence 3456888886 4 3 2 22344466667999999999997663 2345667777653
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.67 E-value=2.1e+02 Score=29.25 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=26.3
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceeeeee
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLC 143 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt 143 (459)
.+.+.++.||||||.|+.+.. ....||+.+ |-.+...+
T Consensus 186 ~~eV~DL~FS~dgk~lasig~--------------d~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGA--------------DSARVWSVNTGAALARKT 224 (398)
T ss_pred cCccccceeCCCCcEEEEecC--------------CceEEEEeccCchhhhcC
Confidence 445679999999999988852 246788865 43344443
No 216
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=44.93 E-value=21 Score=35.00 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=31.9
Q ss_pred CceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCCc
Q 012630 398 LQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPGE 441 (459)
Q Consensus 398 ~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~e 441 (459)
+..|.+.|.+.=..+..-.+++|+||.+.. |||+|+..=...
T Consensus 67 ~~~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~ 108 (299)
T COG2382 67 GPVEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQD 108 (299)
T ss_pred CchhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHH
Confidence 455666676665567888999999999877 999998765443
No 217
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=44.23 E-value=3.1e+02 Score=28.78 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=47.6
Q ss_pred cceeeeEEecCCCceEEEEEeccCCccc----------c------------ccCCCCeEEeccCCCCCCCC---------
Q 012630 160 EGMRLISWRADRPSTLYWVETQDGGAAK----------V------------EVSPRDIIYTQPAEPVEGEE--------- 208 (459)
Q Consensus 160 ~~~r~~~WspDg~~~l~~~~~~d~g~~~----------~------------~~~~~~~l~~~~~~pf~g~~--------- 208 (459)
...+.+.+.|||. ||+. .-|.+... . ....+..|+.++. +|+-
T Consensus 146 H~GgrI~FgPDG~--LYVs-~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~---DGsiP~dNPf~~g 219 (454)
T TIGR03606 146 HNGGRLVFGPDGK--IYYT-IGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNL---DGSIPKDNPSING 219 (454)
T ss_pred cCCceEEECCCCc--EEEE-ECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcC---CCCCCCCCCccCC
Confidence 4567789999986 5544 33443110 0 0123457888876 5421
Q ss_pred -ceEeccccce-eccceeCCCCcEEEEEeecCCccEEEEEEcC
Q 012630 209 -PEILHKLDLR-FRGVSWCDDSLALVQETWFKTTQTRTWLISP 249 (459)
Q Consensus 209 -~~~L~~~~~~-~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~~ 249 (459)
..+++....| -.+++|.++|..++.+... .....|.+|..
T Consensus 220 ~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp-~~~DEiN~I~~ 261 (454)
T TIGR03606 220 VVSHIFTYGHRNPQGLAFTPDGTLYASEQGP-NSDDELNIIVK 261 (454)
T ss_pred CcceEEEEeccccceeEECCCCCEEEEecCC-CCCcEEEEecc
Confidence 2345555555 3568898888777776532 24556777753
No 218
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=43.98 E-value=1.1e+02 Score=30.91 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=49.6
Q ss_pred hcceEEEcC-CCcee-ecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEec-CCceeeeeecccccc
Q 012630 74 TTQLVLATL-DGTVK-EFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTA-DGKFVRQLCELPLVE 149 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~-~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~-~g~~~~~lt~~p~~~ 149 (459)
.+++.+.|+ +-... .+-+ .+...-+++||||..||-.+.+ .+-|-|+.+ +|..+.+.-+.-
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeK------------GTVIRVf~v~~G~kl~eFRRG~--- 216 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEK------------GTVIRVFSVPEGQKLYEFRRGT--- 216 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccC------------ceEEEEEEcCCccEeeeeeCCc---
Confidence 678888886 33322 2322 4556789999999999888743 245566664 355555443321
Q ss_pred cccccccccccceeeeEEecCCCceEE
Q 012630 150 NIPIAYNSVREGMRLISWRADRPSTLY 176 (459)
Q Consensus 150 ~~P~~~~~~~~~~r~~~WspDg~~~l~ 176 (459)
.....-+++++||++ .|.
T Consensus 217 --------~~~~IySL~Fs~ds~-~L~ 234 (391)
T KOG2110|consen 217 --------YPVSIYSLSFSPDSQ-FLA 234 (391)
T ss_pred --------eeeEEEEEEECCCCC-eEE
Confidence 122456789999998 554
No 219
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=43.54 E-value=36 Score=34.62 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=26.9
Q ss_pred CceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcC
Q 012630 398 LQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYP 439 (459)
Q Consensus 398 ~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp 439 (459)
-..|.+.|...+|..+.++|+.|.+.+ ++.|+||....
T Consensus 86 Y~~EKv~f~~~p~~~vpaylLvPd~~~----~p~PAVL~lHg 123 (390)
T PF12715_consen 86 YTREKVEFNTTPGSRVPAYLLVPDGAK----GPFPAVLCLHG 123 (390)
T ss_dssp EEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--
T ss_pred eEEEEEEEEccCCeeEEEEEEecCCCC----CCCCEEEEeCC
Confidence 478889999999999999999998752 38999998743
No 220
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=43.52 E-value=3e+02 Score=29.06 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=34.3
Q ss_pred eeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc-ccceeccceeCCCCcEEEEEe
Q 012630 163 RLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK-LDLRFRGVSWCDDSLALVQET 235 (459)
Q Consensus 163 r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~-~~~~~~~~~Ws~D~~al~~~~ 235 (459)
.-+.++|||. .|+.. ..|. .--||.+++ +|-.-..+-+ ....+..+.||.|+..|+...
T Consensus 451 s~v~ysp~G~-~lAvg-s~d~---------~iyiy~Vs~---~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 451 SVVRYSPDGA-FLAVG-SHDN---------HIYIYRVSA---NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEEEEcCCCC-EEEEe-cCCC---------eEEEEEECC---CCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 3679999998 66632 2221 124667777 5522112211 123456689999998888654
No 221
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=42.63 E-value=56 Score=33.87 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=28.8
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC-ceeeeeecccccccc-----c-ccccccccceee
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG-KFVRQLCELPLVENI-----P-IAYNSVREGMRL 164 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g-~~~~~lt~~p~~~~~-----P-~~~~~~~~~~r~ 164 (459)
|+.++++.+|.|.|+|.|..-- ..++..+|++- ...+.+-+..+.... | +.--.+..|+..
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWL------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ------EEE-TTS-EEEEEETT------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred CCceEeEEEccCCCEEEEEccc------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 4567899999999999888511 23444444331 112222211111100 1 011134457788
Q ss_pred eEEecCCCceEEEEEec
Q 012630 165 ISWRADRPSTLYWVETQ 181 (459)
Q Consensus 165 ~~WspDg~~~l~~~~~~ 181 (459)
++-|-||+ +||++...
T Consensus 379 vqlS~DGk-RlYvTnSL 394 (461)
T PF05694_consen 379 VQLSLDGK-RLYVTNSL 394 (461)
T ss_dssp EEE-TTSS-EEEEE---
T ss_pred EEEccCCe-EEEEEeec
Confidence 89999999 88887644
No 222
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=41.25 E-value=2.6e+02 Score=28.92 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=62.9
Q ss_pred CcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCC
Q 012630 126 PQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVE 205 (459)
Q Consensus 126 ~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~ 205 (459)
..++|++|+....-.+|...- -| +.+.|.|.+.|-.. .|+|-.-.|. .....+.+.||+.++.-|
T Consensus 153 YkD~W~fd~~trkweql~~~g----~P----S~RSGHRMvawK~~---lilFGGFhd~---nr~y~YyNDvy~FdLdty- 217 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFGG----GP----SPRSGHRMVAWKRQ---LILFGGFHDS---NRDYIYYNDVYAFDLDTY- 217 (521)
T ss_pred hhheeeeeeccchheeeccCC----CC----CCCccceeEEeeee---EEEEcceecC---CCceEEeeeeEEEeccce-
Confidence 588999998866555554421 13 45779999999754 6666544333 122244577888877222
Q ss_pred CCCceEecc---ccceeccce--eCCCCcEEEEEee----------cCCccEEEEEEcCCCC
Q 012630 206 GEEPEILHK---LDLRFRGVS--WCDDSLALVQETW----------FKTTQTRTWLISPGSK 252 (459)
Q Consensus 206 g~~~~~L~~---~~~~~~~~~--Ws~D~~al~~~~~----------~~~~~~~ly~v~~~~~ 252 (459)
.-..|-. .+...++.+ -+|+|-++++... ...++.++|+++++.+
T Consensus 218 --kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~ 277 (521)
T KOG1230|consen 218 --KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG 277 (521)
T ss_pred --eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence 2222211 122234444 4577655554311 1157999999999875
No 223
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=40.99 E-value=95 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=15.8
Q ss_pred CCCCeEEEEEeccCcccccccCCCCcceEEEecCCc
Q 012630 102 PDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK 137 (459)
Q Consensus 102 PDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~ 137 (459)
|||++|.++. + ....+.++|...+
T Consensus 1 pd~~~lyv~~-~-----------~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTN-S-----------GSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEe-C-----------CCCEEEEEECCCC
Confidence 7999986553 2 2456778887543
No 224
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.97 E-value=4.5e+02 Score=27.59 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHHHHhhcceEEEcC-CCcee---ecC--C-Ccee-eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc
Q 012630 66 EYLFEHYTTTQLVLATL-DGTVK---EFG--P-PAIY-TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK 137 (459)
Q Consensus 66 ~~~f~~~~~sqL~~v~~-~G~~~---~l~--~-~~~~-~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~ 137 (459)
+++...+..++.+.+|. +-+.. -+. . ...+ ..++.-|++..|.+.....-.+ .-.+++++.+|+
T Consensus 145 ~~LlalwEgG~pyrLdp~tL~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~--------~l~~~~v~~~G~ 216 (490)
T COG3670 145 DELLALWEGGSPYRLDPDTLETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALP--------YLTYYVVDADGE 216 (490)
T ss_pred hHHHHHHhcCCccccChhHhhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCC--------eeEEEEECCCCc
Confidence 66777777788888885 22111 122 1 1112 3678889998777765432111 245778888888
Q ss_pred eeeeee
Q 012630 138 FVRQLC 143 (459)
Q Consensus 138 ~~~~lt 143 (459)
.++...
T Consensus 217 l~r~~~ 222 (490)
T COG3670 217 LRRTVD 222 (490)
T ss_pred EEEeee
Confidence 776543
No 225
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=39.91 E-value=38 Score=36.25 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=29.9
Q ss_pred ceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEc--CCc
Q 012630 399 QKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAY--PGE 441 (459)
Q Consensus 399 ~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Y--p~e 441 (459)
-...+..+-+||+.|..-||+|++- +++|+||-.= |..
T Consensus 18 ~~~~v~V~MRDGvrL~~dIy~Pa~~-----g~~Pvll~~~~~Py~ 57 (563)
T COG2936 18 IERDVMVPMRDGVRLAADIYRPAGA-----GPLPVLLSRTRLPYR 57 (563)
T ss_pred eeeeeeEEecCCeEEEEEEEccCCC-----CCCceeEEeeccccc
Confidence 3445778889999999999999762 3799998865 543
No 226
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=39.78 E-value=3.9e+02 Score=27.73 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.2
Q ss_pred ceeeecccCCCCCeEEEEEecc
Q 012630 93 AIYTAVEPSPDQKYILITSIDR 114 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~ 114 (459)
+.+..++.-|.|+||+-.+++.
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc
Confidence 3456888999999998887654
No 227
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=39.30 E-value=14 Score=21.44 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=7.2
Q ss_pred cccCCCCCe
Q 012630 98 VEPSPDQKY 106 (459)
Q Consensus 98 ~~~SPDG~~ 106 (459)
-.|||||+-
T Consensus 6 t~FSp~Grl 14 (23)
T PF10584_consen 6 TTFSPDGRL 14 (23)
T ss_dssp TSBBTTSSB
T ss_pred eeECCCCeE
Confidence 469999984
No 228
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=38.27 E-value=2.7e+02 Score=28.26 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=22.6
Q ss_pred CceEeccccceeccceeCCCCcEEEEEeecCCccEEEEEEc
Q 012630 208 EPEILHKLDLRFRGVSWCDDSLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 208 ~~~~L~~~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~ 248 (459)
..+.+...-.....++|++|+..|++... +.+.++-.++
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDR--DEkIRvs~yp 181 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADR--DEKIRVSRYP 181 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecC--CceEEEEecC
Confidence 45555544445677999999866665431 3344444443
No 229
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.24 E-value=3.6e+02 Score=26.53 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=18.6
Q ss_pred ceeeecccCCCCCeEEEEEeccC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRP 115 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p 115 (459)
..+.+++|+|+.+.|.|...++|
T Consensus 181 ~GfEGlA~d~~~~~l~~aKEr~P 203 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKERNP 203 (316)
T ss_pred cCceeeecCCCCceEEEEEccCC
Confidence 35679999999999988875544
No 230
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=1.2e+02 Score=31.61 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=57.0
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
.+.+.++.||||.|-||+.... ..+..++..|.+.+++.... .-.-.....+|.|+...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~-------------~~v~f~nf~~d~~~l~~~~~--------ck~k~~~IlGF~W~~s~ 124 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTS-------------KTVDFCNFIPDNSQLEYTQE--------CKTKNANILGFCWTSST 124 (657)
T ss_pred CCceeEEEeccCcceEEEEecC-------------ceEEEEecCCCchhhHHHHH--------hccCcceeEEEEEecCe
Confidence 4556799999999999998533 45566665554443322210 01123456789999883
Q ss_pred CceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEe--cc-ccceeccceeCCC-CcEEEEE
Q 012630 172 PSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEIL--HK-LDLRFRGVSWCDD-SLALVQE 234 (459)
Q Consensus 172 ~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L--~~-~~~~~~~~~Ws~D-~~al~~~ 234 (459)
-|+++.. .| -++|.++- +.+.| .+ .........|.++ ..+|+..
T Consensus 125 --e~A~i~~--~G---------~e~y~v~p------ekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 125 --EIAFITD--QG---------IEFYQVLP------EKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred --eEEEEec--CC---------eEEEEEch------hhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 4666642 22 14666544 22222 22 2223444567787 4666654
No 231
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=37.09 E-value=1.6e+02 Score=28.93 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=37.1
Q ss_pred cceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCC--CCCceEeccccceeccceeC---CCCcEEEEE
Q 012630 160 EGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVE--GEEPEILHKLDLRFRGVSWC---DDSLALVQE 234 (459)
Q Consensus 160 ~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~--g~~~~~L~~~~~~~~~~~Ws---~D~~al~~~ 234 (459)
..+..+.|.|-++.-|.- .|| .....||-+.- ++. +..|...+....-..++.|+ +|.+++.+.
T Consensus 288 a~VNgIaWaPhS~~hict-----aGD-----D~qaliWDl~q-~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICT-----AGD-----DCQALIWDLQQ-MPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccccceEecCCCCceeee-----cCC-----cceEEEEeccc-ccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 345688999999865552 222 11224444433 221 22343444556667889997 456888876
Q ss_pred e
Q 012630 235 T 235 (459)
Q Consensus 235 ~ 235 (459)
.
T Consensus 357 k 357 (364)
T KOG0290|consen 357 K 357 (364)
T ss_pred C
Confidence 5
No 232
>PRK13613 lipoprotein LpqB; Provisional
Probab=36.81 E-value=3.8e+02 Score=29.29 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=27.6
Q ss_pred HHhhcceEEEcC-C----CceeecCC----Cc-eeeecccCCCCCeEEEEE
Q 012630 71 HYTTTQLVLATL-D----GTVKEFGP----PA-IYTAVEPSPDQKYILITS 111 (459)
Q Consensus 71 ~~~~sqL~~v~~-~----G~~~~l~~----~~-~~~~~~~SPDG~~l~~~~ 111 (459)
|...++++++++ + +...++.. .. ...++..|+||+.+|++.
T Consensus 331 ~~~~G~~~~~~~~~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~v~ 381 (599)
T PRK13613 331 YFIDGQLWLLRISGTSNGTDPEPVPGALGSGRVPLRRVAVSRDESRAAGIS 381 (599)
T ss_pred EEeCCceEEEeccccccCCCcccCCCccCCCCCCccceEEcCCCceEEEEc
Confidence 445667777776 2 34444432 22 346899999999999995
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=36.34 E-value=1.4e+02 Score=29.53 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=24.1
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD 135 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~ 135 (459)
.+.+..+.+|||+++|++.|.+ ..+.|+.+.
T Consensus 226 ~A~iy~iaFSp~~s~LavsSdK-------------gTlHiF~l~ 256 (346)
T KOG2111|consen 226 RADIYCIAFSPNSSWLAVSSDK-------------GTLHIFSLR 256 (346)
T ss_pred hheEEEEEeCCCccEEEEEcCC-------------CeEEEEEee
Confidence 4556789999999999999855 566676554
No 234
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.12 E-value=1.7e+02 Score=30.22 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.0
Q ss_pred ceeeecccCCCCCeEEEEEe
Q 012630 93 AIYTAVEPSPDQKYILITSI 112 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~ 112 (459)
+.+..++.||+|++||+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~ 236 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTD 236 (410)
T ss_pred CCeEEEEECCCCCEEEEEEC
Confidence 45688999999999999963
No 235
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.83 E-value=4.4e+02 Score=25.98 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=42.9
Q ss_pred eeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccce--eccceeCCCCcEEE-EEeecCC
Q 012630 163 RLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLR--FRGVSWCDDSLALV-QETWFKT 239 (459)
Q Consensus 163 r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~--~~~~~Ws~D~~al~-~~~~~~~ 239 (459)
..+..+|-.+..++|++-+ | ..-+++|. -.+.++..+.+...| ++.-.+|+||..|+ .+...+.
T Consensus 71 Hgi~~~p~~~ravafARrP--G---------tf~~vfD~--~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 71 HGIAFHPALPRAVAFARRP--G---------TFAMVFDP--NGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CCeecCCCCcceEEEEecC--C---------ceEEEECC--CCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 3678888888788877632 1 23444444 123466667665555 35568999996655 4444444
Q ss_pred ccEEEEEEcC
Q 012630 240 TQTRTWLISP 249 (459)
Q Consensus 240 ~~~~ly~v~~ 249 (459)
...-|=+++.
T Consensus 138 ~rGViGvYd~ 147 (366)
T COG3490 138 NRGVIGVYDA 147 (366)
T ss_pred CCceEEEEec
Confidence 4344444443
No 236
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=35.54 E-value=2e+02 Score=23.96 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=43.1
Q ss_pred ecccCCCCC-eEEEEEeccCcccccccCCCCcceEEE--ecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 97 AVEPSPDQK-YILITSIDRPYSFTVSYTKFPQKVQVW--TADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 97 ~~~~SPDG~-~l~~~~~~~p~s~~v~~~~~~~~~~v~--d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
-+.+||.-. +++|+---+.-. .--.+.|..+..|+ +.+.+....|..... ..|-+-.+++.|-.--.|||||.
T Consensus 5 vvT~sP~~~~ryvFIHGpe~pd-~~w~YdfhhRrGViv~~~~~~~a~~lDA~di--t~Pyt~GALRGGtHvHvfSpDG~- 80 (122)
T PF12566_consen 5 VVTVSPVEPPRYVFIHGPENPD-AEWQYDFHHRRGVIVSDEQPGVAINLDAMDI--TPPYTPGALRGGTHVHVFSPDGS- 80 (122)
T ss_pred EEEeCCCCCceEEEEeCCCCCC-CCCccccccceeEEEecCCCCceeecchhcc--cCCCCCccccCCccceEECCCCC-
Confidence 467888877 777874222000 00013354444444 334344443333211 11344457777777789999999
Q ss_pred eEEEEE
Q 012630 174 TLYWVE 179 (459)
Q Consensus 174 ~l~~~~ 179 (459)
+|-|+.
T Consensus 81 ~lSFTY 86 (122)
T PF12566_consen 81 WLSFTY 86 (122)
T ss_pred EEEEEe
Confidence 888875
No 237
>PRK13614 lipoprotein LpqB; Provisional
Probab=35.44 E-value=5.3e+02 Score=27.97 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=24.7
Q ss_pred hhcceEEEcCCCceeecCC----Cc-eeeecccCCCCCeEEEEE
Q 012630 73 TTTQLVLATLDGTVKEFGP----PA-IYTAVEPSPDQKYILITS 111 (459)
Q Consensus 73 ~~sqL~~v~~~G~~~~l~~----~~-~~~~~~~SPDG~~l~~~~ 111 (459)
..++|+.++ ++.+.++.. .+ ....+..|+||+.++++.
T Consensus 319 ~~G~l~~~~-~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~ 361 (573)
T PRK13614 319 SDGELVRYE-NGQISPLPDIQSVAGLGPASPAESPVSQTVAFLN 361 (573)
T ss_pred cCCeEEEec-CCCcccCCCccCcCcccccceeecCCCceEEEec
Confidence 345666655 445555432 22 345789999999999984
No 238
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=25 Score=31.10 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=22.1
Q ss_pred EEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCCccCCc
Q 012630 403 IKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPGEFRSK 445 (459)
Q Consensus 403 i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~e~~~~ 445 (459)
++-+..||.. +.|- +|. || |+|||+||+-+...
T Consensus 13 F~Lp~~~g~~----v~Ls-d~~----Gk-~VVLyFYPk~~Tpg 45 (157)
T COG1225 13 FELPDQDGET----VSLS-DLR----GK-PVVLYFYPKDFTPG 45 (157)
T ss_pred eEeecCCCCE----EehH-Hhc----CC-cEEEEECCCCCCCc
Confidence 4557777766 3343 443 24 99999999987643
No 239
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.74 E-value=1.1e+02 Score=32.64 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=33.5
Q ss_pred hhcceEEEcCCCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC
Q 012630 73 TTTQLVLATLDGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD 135 (459)
Q Consensus 73 ~~sqL~~v~~~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~ 135 (459)
..+.|.+.|.+-.+..++. +-....++|.|||..+++.+.+ .++++||++
T Consensus 279 ~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-------------GelQ~FD~A 329 (545)
T PF11768_consen 279 EDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-------------GELQCFDMA 329 (545)
T ss_pred cCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCC-------------ceEEEEEee
Confidence 4456667776333444443 3334689999999988877643 788999976
No 240
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=34.43 E-value=48 Score=33.66 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=37.2
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-CceeeeeecccccccccccccccccceeeeEEecC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
...+.+++||||+.+|.+.+.. ..+.+||+. |.....+.+ .+ .-+..+.|-|-
T Consensus 123 ~~diydL~Ws~d~~~l~s~s~d-------------ns~~l~Dv~~G~l~~~~~d---h~----------~yvqgvawDpl 176 (434)
T KOG1009|consen 123 RDDIYDLAWSPDSNFLVSGSVD-------------NSVRLWDVHAGQLLAILDD---HE----------HYVQGVAWDPL 176 (434)
T ss_pred ccchhhhhccCCCceeeeeecc-------------ceEEEEEeccceeEeeccc---cc----------cccceeecchh
Confidence 3455799999999999888743 567889976 444444433 11 23446788888
Q ss_pred CC
Q 012630 171 RP 172 (459)
Q Consensus 171 g~ 172 (459)
.+
T Consensus 177 ~q 178 (434)
T KOG1009|consen 177 NQ 178 (434)
T ss_pred hh
Confidence 77
No 241
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=33.27 E-value=6.9e+02 Score=27.50 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=48.9
Q ss_pred eeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccc-cceeccceeCCCCcEEEEEeecC-Cc
Q 012630 163 RLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKL-DLRFRGVSWCDDSLALVQETWFK-TT 240 (459)
Q Consensus 163 r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~-~~~~~~~~Ws~D~~al~~~~~~~-~~ 240 (459)
..++-|||+. .++|+.. ..|+... .|..-+. . +...+... ..-.+++.|.+|+..|+|....+ .+
T Consensus 132 g~~~~s~D~~-~la~s~D-~~G~e~y------~lr~kdL---~--tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 132 GAASISPDHN-LLAYSVD-VLGDEQY------TLRFKDL---A--TGEELPDEITNTSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeCCCCc-eEEEEEe-cccccEE------EEEEEec---c--cccccchhhcccccceEEecCCCeEEEEEEcCCCC
Confidence 4678889988 7888753 2333221 2222233 1 11223322 22356689999987777655322 47
Q ss_pred cEEEEEEcCCCCCCCceEEee
Q 012630 241 QTRTWLISPGSKDTAPLILFD 261 (459)
Q Consensus 241 ~~~ly~v~~~~~~~~~~~l~d 261 (459)
..++|.-...+....-+++++
T Consensus 199 p~kv~~h~~gt~~~~d~lvye 219 (682)
T COG1770 199 PDKVWRHRLGTPGSSDELVYE 219 (682)
T ss_pred cceEEEEecCCCCCcceEEEE
Confidence 778888877664344466654
No 242
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.26 E-value=1.6e+02 Score=28.97 Aligned_cols=70 Identities=9% Similarity=0.134 Sum_probs=47.1
Q ss_pred ceEEEEECCCCceEEEeecCcccceEE---EEE-eecCCCccccccCCCEEEEEeecCCCCcceEEEECCCcceeecccc
Q 012630 313 PFLDLFNINTGSKERIWESDKEKYYET---AVA-LNLDQSVGDVNLNQLKILTSKESKTEITQYWIQSWPHKKCRQITDF 388 (459)
Q Consensus 313 ~~l~~~~l~tg~~~~l~~~~~~~~~e~---~~~-~~~~~~~~~~~~d~~~i~~~~~s~~~P~ely~~~~~~g~~~~LT~~ 388 (459)
.|+-.+|.+.++.+.||.....+..++ +.. +.|+. .+++++.+++-..---+|.++..+|+.++|...
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~--------~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPY--------EDRLLLARADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCC--------cCEEEEEecCCcceeeeEEEcccCCceeeccCC
Confidence 467788988899999997653211111 111 22333 468999998887655588888888999988875
Q ss_pred cC
Q 012630 389 PH 390 (459)
Q Consensus 389 ~~ 390 (459)
+.
T Consensus 150 ps 151 (339)
T PF09910_consen 150 PS 151 (339)
T ss_pred CC
Confidence 43
No 243
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=33.04 E-value=6e+02 Score=26.69 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=57.2
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC---C
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR---P 172 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg---~ 172 (459)
.++.|.|||+ |+++. + -..+|.+++..++....+..+|... ......|.-.+.++||= .
T Consensus 33 w~maflPDG~-llVtE-R-----------~~G~I~~v~~~~~~~~~~~~l~~v~-----~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 33 WALLWGPDNQ-LWVTE-R-----------ATGKILRVNPETGEVKVVFTLPEIV-----NDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred eEEEEcCCCe-EEEEE-e-----------cCCEEEEEeCCCCceeeeecCCcee-----ccCCCCceeeEEECCCccccC
Confidence 4789999996 44443 1 1256777776554444444432110 01124566788999984 2
Q ss_pred --ceEEEEEeccCCccccccCCCCeEEeccCCCCCC--CCceEecc-cc----ceeccceeCCCCcEEEEE
Q 012630 173 --STLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEG--EEPEILHK-LD----LRFRGVSWCDDSLALVQE 234 (459)
Q Consensus 173 --~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g--~~~~~L~~-~~----~~~~~~~Ws~D~~al~~~ 234 (459)
..||+..+...++.. ...+..|..+...+-.. .+.+.|.. .+ ...+.+.+++||..++..
T Consensus 95 ~n~~lYvsyt~~~~~~~--~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~ 163 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKE--LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTI 163 (454)
T ss_pred CCcEEEEEEeccCCCCC--ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEE
Confidence 145554433222211 01234555443300000 12344432 11 113457899999666643
No 244
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=32.31 E-value=1.2e+02 Score=28.62 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=33.0
Q ss_pred CCCCCcCCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcC
Q 012630 391 PYPLLSTLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYP 439 (459)
Q Consensus 391 ~~~~~~~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp 439 (459)
+.|..-...-|.|+.+..|-++|++|+++-. . .-|++||+.+
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E-----~--S~pTlLyfh~ 86 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSE-----S--SRPTLLYFHA 86 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeeccc-----C--CCceEEEEcc
Confidence 4454445678889999999999999999932 2 4699999876
No 245
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=32.13 E-value=1.7e+02 Score=30.43 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=38.5
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC--CceeeeeecccccccccccccccccceeeeEEec
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD--GKFVRQLCELPLVENIPIAYNSVREGMRLISWRA 169 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~--g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~Wsp 169 (459)
...++.++|.|---+|+.+. .....++||++- ++.++ +|..-+.++|.+.|++
T Consensus 214 ~kgvsai~~fp~~~hLlLS~------------gmD~~vklW~vy~~~~~lr-------------tf~gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSG------------GMDGLVKLWNVYDDRRCLR-------------TFKGHRKPVRDASFNN 268 (503)
T ss_pred ccccchhhhccceeeEEEec------------CCCceEEEEEEecCcceeh-------------hhhcchhhhhhhhccc
Confidence 45678999999555554443 245888999864 33332 2334456788999999
Q ss_pred CCCc
Q 012630 170 DRPS 173 (459)
Q Consensus 170 Dg~~ 173 (459)
+|..
T Consensus 269 ~g~~ 272 (503)
T KOG0282|consen 269 CGTS 272 (503)
T ss_pred cCCe
Confidence 9994
No 246
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=31.65 E-value=73 Score=31.27 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=32.8
Q ss_pred CCcCCceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCC
Q 012630 394 LLSTLQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPG 440 (459)
Q Consensus 394 ~~~~~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~ 440 (459)
..+..+.+...|+..||.+|+++.+.|++-. . ..|+||++..-
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~--~--~~~~VvllHG~ 68 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSSS--P--PRALIFMVHGY 68 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCCC--C--CceEEEEEcCC
Confidence 3444577788899999999999999986521 2 46889998876
No 247
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=30.61 E-value=3.4e+02 Score=26.96 Aligned_cols=55 Identities=18% Similarity=0.395 Sum_probs=32.5
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecC
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspD 170 (459)
.+++|.|||+.+ ++. + ..+|++++.+|.....+...+- -......+.-.+.+.|+
T Consensus 5 ~~~a~~pdG~l~-v~e-~------------~G~i~~~~~~g~~~~~v~~~~~------v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 5 RSMAFLPDGRLL-VAE-R------------SGRIWVVDKDGSLKTPVADLPE------VFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEETTSCEE-EEE-T------------TTEEEEEETTTEECEEEEE-TT------TBTSTTBSEEEEEE-TT
T ss_pred eEEEEeCCCcEE-EEe-C------------CceEEEEeCCCcCcceeccccc------ccccccCCcccceeccc
Confidence 478899998653 442 1 3778888866665344444321 01223457788899995
No 248
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=30.35 E-value=4.8e+02 Score=24.91 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=16.4
Q ss_pred eeeecccCCCCCeEEEEEeccC
Q 012630 94 IYTAVEPSPDQKYILITSIDRP 115 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p 115 (459)
.+.+++|.|.++.|+++..+.|
T Consensus 119 G~EGla~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 119 GFEGLAYDPKTNRLFVAKERKP 140 (248)
T ss_dssp --EEEEEETTTTEEEEEEESSS
T ss_pred ceEEEEEcCCCCEEEEEeCCCC
Confidence 4679999999999988765444
No 249
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=6.2e+02 Score=25.62 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=74.4
Q ss_pred hcceEEEcC-CCceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 74 TTQLVLATL-DGTVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 74 ~sqL~~v~~-~G~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
...+.++|- ++....... ......+.++|||+++++... -...+.++|.++..+.+ ...
T Consensus 139 ~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~------------~~~~v~vi~~~~~~v~~-~~~------ 199 (381)
T COG3391 139 NNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNS------------DDNTVSVIDTSGNSVVR-GSV------ 199 (381)
T ss_pred CceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEec------------CCCeEEEEeCCCcceec-ccc------
Confidence 455666665 444333222 112268999999999977741 13567788877655554 221
Q ss_pred cccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEe--ccccceeccceeCCCCc
Q 012630 152 PIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEIL--HKLDLRFRGVSWCDDSL 229 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L--~~~~~~~~~~~Ws~D~~ 229 (459)
........+++.+.++|||. .+|-...... ...+..++. ..+..... ......-.++.-+|+|.
T Consensus 200 -~~~~~~~~~P~~i~v~~~g~-~~yV~~~~~~---------~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~ 265 (381)
T COG3391 200 -GSLVGVGTGPAGIAVDPDGN-RVYVANDGSG---------SNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGK 265 (381)
T ss_pred -ccccccCCCCceEEECCCCC-EEEEEeccCC---------CceEEEEeC---CCceEEEeccccccCCCCceeECCCCC
Confidence 11123456778999999999 5554332111 235666655 22122222 11111223456678874
Q ss_pred EEEEEeecCCccEEEEEEcCCC
Q 012630 230 ALVQETWFKTTQTRTWLISPGS 251 (459)
Q Consensus 230 al~~~~~~~~~~~~ly~v~~~~ 251 (459)
.+...... ...++.++..+
T Consensus 266 ~~yv~~~~---~~~V~vid~~~ 284 (381)
T COG3391 266 AAYVANSQ---GGTVSVIDGAT 284 (381)
T ss_pred EEEEEecC---CCeEEEEeCCC
Confidence 44433211 23477777544
No 250
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=28.72 E-value=60 Score=34.70 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=24.9
Q ss_pred eEEEcC-CCceeecCC---CceeeecccCCCCCeEEEEEecc
Q 012630 77 LVLATL-DGTVKEFGP---PAIYTAVEPSPDQKYILITSIDR 114 (459)
Q Consensus 77 L~~v~~-~G~~~~l~~---~~~~~~~~~SPDG~~l~~~~~~~ 114 (459)
++..+. .|++++|.. ...+.++.|||||+.| |+....
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tl-FvniQH 522 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTL-FVNIQH 522 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEE-EEEEeC
Confidence 444455 677777664 3456799999999986 554443
No 251
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=28.63 E-value=2.3e+02 Score=28.22 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCeEEeccCCCCCCCCceEeccccceeccceeCCCCcEEEEEe
Q 012630 193 RDIIYTQPAEPVEGEEPEILHKLDLRFRGVSWCDDSLALVQET 235 (459)
Q Consensus 193 ~~~l~~~~~~pf~g~~~~~L~~~~~~~~~~~Ws~D~~al~~~~ 235 (459)
+.+++.++. +.|+...+...++...++.|. .+.+++..+
T Consensus 222 tGev~~vD~---~~G~~e~Va~vpG~~rGL~f~-G~llvVgmS 260 (335)
T TIGR03032 222 RGELGYVDP---QAGKFQPVAFLPGFTRGLAFA-GDFAFVGLS 260 (335)
T ss_pred CCEEEEEcC---CCCcEEEEEECCCCCccccee-CCEEEEEec
Confidence 456666666 534777777777778889998 457777654
No 252
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.96 E-value=1.2e+02 Score=30.44 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=31.8
Q ss_pred eEEEcC-CCce--eecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC
Q 012630 77 LVLATL-DGTV--KEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG 136 (459)
Q Consensus 77 L~~v~~-~G~~--~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g 136 (459)
|-.+++ +|.. +..+....+.++.+||-||||+-.+. ...+.|||+..
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-------------Dktlrvwdl~~ 365 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-------------DKTLRVWDLKN 365 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-------------CCcEEEEEecc
Confidence 333444 5532 23445667889999999999976653 36788999763
No 253
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=27.90 E-value=1.2e+02 Score=33.60 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=34.3
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
..+..++||+||.||+--- --..+-+|-++.+..+.|-+ .......+.||||+.
T Consensus 252 ~~V~~L~fS~~G~~LlSGG-------------~E~VLv~Wq~~T~~kqfLPR-------------Lgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGG-------------REGVLVLWQLETGKKQFLPR-------------LGSPILHIVVSPDSD 305 (792)
T ss_pred cccceeEEecCCceEeecc-------------cceEEEEEeecCCCcccccc-------------cCCeeEEEEEcCCCC
Confidence 3556899999999984331 12445666666555333322 234567899999988
No 254
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=27.58 E-value=1e+02 Score=31.84 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=24.9
Q ss_pred CceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEE
Q 012630 398 LQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWA 437 (459)
Q Consensus 398 ~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~ 437 (459)
...|.|.++=. |..|.|+|.+|.+ ++ ++|+||.+
T Consensus 163 ~~i~~v~iP~e-g~~I~g~LhlP~~---~~--p~P~VIv~ 196 (411)
T PF06500_consen 163 YPIEEVEIPFE-GKTIPGYLHLPSG---EK--PYPTVIVC 196 (411)
T ss_dssp SEEEEEEEEET-TCEEEEEEEESSS---SS---EEEEEEE
T ss_pred CCcEEEEEeeC-CcEEEEEEEcCCC---CC--CCCEEEEe
Confidence 45677777664 4899999999983 23 89999975
No 255
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=27.21 E-value=72 Score=28.46 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCCccC
Q 012630 404 KYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPGEFR 443 (459)
Q Consensus 404 ~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~e~~ 443 (459)
+.+..||..|.=- .+.. +.|+|+|+||+...
T Consensus 73 tL~dedg~sisLk-----kit~----nk~vV~f~YP~asT 103 (211)
T KOG0855|consen 73 TLKDEDGKSISLK-----KITG----NKPVVLFFYPAAST 103 (211)
T ss_pred ccccCCCCeeeee-----eecC----CCcEEEEEeccCCC
Confidence 3467788777632 2331 34999999998643
No 256
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=26.99 E-value=1.6e+02 Score=18.56 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=21.0
Q ss_pred ceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccC
Q 012630 161 GMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPA 201 (459)
Q Consensus 161 ~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~ 201 (459)
.+..+.|.++++ .|||+... +..|+..+.
T Consensus 10 ~~~~la~d~~~~-~lYw~D~~-----------~~~I~~~~~ 38 (43)
T smart00135 10 HPNGLAVDWIEG-RLYWTDWG-----------LDVIEVANL 38 (43)
T ss_pred CcCEEEEeecCC-EEEEEeCC-----------CCEEEEEeC
Confidence 445789999999 99998632 346666666
No 257
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=26.54 E-value=57 Score=34.31 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=25.5
Q ss_pred ECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCCccCCccc
Q 012630 406 QRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPGEFRSKDA 447 (459)
Q Consensus 406 ks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~e~~~~~~ 447 (459)
.+.|= |.=-++.|.+...+. ++|+|||+|..-|.....
T Consensus 104 ~sEDC--L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~ 141 (535)
T PF00135_consen 104 QSEDC--LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSG 141 (535)
T ss_dssp BES-----EEEEEEETSSSSTT--SEEEEEEE--STTTSSCT
T ss_pred CCchH--HHHhhhhcccccccc--ccceEEEeecccccCCCc
Confidence 45665 555689998876443 799999999999987655
No 258
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.51 E-value=2.1e+02 Score=29.61 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=37.9
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
-.+++.++-||| |+|..- .....+-|||+.... .++..|... ..++.+.++.+|-
T Consensus 348 v~~ts~~fHpDg--Lifgtg-----------t~d~~vkiwdlks~~--~~a~Fpght----------~~vk~i~FsENGY 402 (506)
T KOG0289|consen 348 VEYTSAAFHPDG--LIFGTG-----------TPDGVVKIWDLKSQT--NVAKFPGHT----------GPVKAISFSENGY 402 (506)
T ss_pred ceeEEeeEcCCc--eEEecc-----------CCCceEEEEEcCCcc--ccccCCCCC----------CceeEEEeccCce
Confidence 346788899999 445531 124678899987543 566665532 2456889999887
Q ss_pred ceEE
Q 012630 173 STLY 176 (459)
Q Consensus 173 ~~l~ 176 (459)
+|+
T Consensus 403 -~La 405 (506)
T KOG0289|consen 403 -WLA 405 (506)
T ss_pred -EEE
Confidence 555
No 259
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.10 E-value=6.4e+02 Score=28.17 Aligned_cols=126 Identities=14% Similarity=0.161 Sum_probs=63.2
Q ss_pred ceeecCCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceee
Q 012630 85 TVKEFGPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRL 164 (459)
Q Consensus 85 ~~~~l~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~ 164 (459)
..|.++... .....+-|-+++|+.-. -..++.|+|+.+.......+ ..+ .-.+.
T Consensus 406 ciRTi~~~y-~l~~~Fvpgd~~Iv~G~-------------k~Gel~vfdlaS~~l~Eti~--AHd----------gaIWs 459 (888)
T KOG0306|consen 406 CIRTITCGY-ILASKFVPGDRYIVLGT-------------KNGELQVFDLASASLVETIR--AHD----------GAIWS 459 (888)
T ss_pred eeEEecccc-EEEEEecCCCceEEEec-------------cCCceEEEEeehhhhhhhhh--ccc----------cceee
Confidence 556666663 35677888888886653 24788899977543221111 111 23456
Q ss_pred eEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEe-------ccccceeccceeCCCCcEEEEEeec
Q 012630 165 ISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEIL-------HKLDLRFRGVSWCDDSLALVQETWF 237 (459)
Q Consensus 165 ~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L-------~~~~~~~~~~~Ws~D~~al~~~~~~ 237 (459)
++-+||++. .+-. ++|..++ +-+..++.+. .|...+.| ...+...-.+..||||..|...--
T Consensus 460 i~~~pD~~g-~vT~----saDktVk--fWdf~l~~~~---~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL- 528 (888)
T KOG0306|consen 460 ISLSPDNKG-FVTG----SADKTVK--FWDFKLVVSV---PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL- 528 (888)
T ss_pred eeecCCCCc-eEEe----cCCcEEE--EEeEEEEecc---CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec-
Confidence 677788883 3311 2232222 2233333333 22122211 112333455788999855544321
Q ss_pred CCccEEEEEEc
Q 012630 238 KTTQTRTWLIS 248 (459)
Q Consensus 238 ~~~~~~ly~v~ 248 (459)
+...++|.+|
T Consensus 529 -dnTVkVyflD 538 (888)
T KOG0306|consen 529 -DNTVKVYFLD 538 (888)
T ss_pred -cCeEEEEEec
Confidence 2345666664
No 260
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.03 E-value=3.1e+02 Score=31.65 Aligned_cols=135 Identities=18% Similarity=0.278 Sum_probs=73.5
Q ss_pred CcccccccccccCCChhhHHHHHHHhhcceEEEcCCC--ceeecCCC---ceeeecccCCCCCeEEEEEeccCccccccc
Q 012630 48 QNVIQNRYTEGLLKDEFDEYLFEHYTTTQLVLATLDG--TVKEFGPP---AIYTAVEPSPDQKYILITSIDRPYSFTVSY 122 (459)
Q Consensus 48 ~~~~~~rt~~d~l~~~~D~~~f~~~~~sqL~~v~~~G--~~~~l~~~---~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~ 122 (459)
.-.+-+|..+-+|..-+ .++...++|+.. .+..|... ...+.++|-||+..-+.++.....
T Consensus 165 ~~lsWNrkvqhILAS~s--------~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~------ 230 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGS--------PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS------ 230 (1049)
T ss_pred eEeccchhhhHHhhccC--------CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC------
Confidence 44445666666666553 334666777733 35556553 346899999998665555544322
Q ss_pred CCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCC
Q 012630 123 TKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAE 202 (459)
Q Consensus 123 ~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~ 202 (459)
..-|.+||+. -+..|+... ..-..|+-.+.|.+.+...|+ ....| ..|+.+..
T Consensus 231 ---~PviqlWDlR------~assP~k~~-----~~H~~GilslsWc~~D~~lll-SsgkD-----------~~ii~wN~- 283 (1049)
T KOG0307|consen 231 ---APVIQLWDLR------FASSPLKIL-----EGHQRGILSLSWCPQDPRLLL-SSGKD-----------NRIICWNP- 283 (1049)
T ss_pred ---CceeEeeccc------ccCCchhhh-----cccccceeeeccCCCCchhhh-cccCC-----------CCeeEecC-
Confidence 2446788853 111222111 123457778999999874333 32211 24555544
Q ss_pred CCCCCCceEecc---ccceeccceeCCC
Q 012630 203 PVEGEEPEILHK---LDLRFRGVSWCDD 227 (459)
Q Consensus 203 pf~g~~~~~L~~---~~~~~~~~~Ws~D 227 (459)
. ....|.. ...-+..+.|++-
T Consensus 284 --~--tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 284 --N--TGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred --C--CceEeeecCCCCcceeeeeecCC
Confidence 2 2223322 2233677899874
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=25.91 E-value=1.9e+02 Score=30.19 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=21.1
Q ss_pred ceEEEcC-CCc-eeecCCCceeeecccCCCCCeEEEEE
Q 012630 76 QLVLATL-DGT-VKEFGPPAIYTAVEPSPDQKYILITS 111 (459)
Q Consensus 76 qL~~v~~-~G~-~~~l~~~~~~~~~~~SPDG~~l~~~~ 111 (459)
.|.+.|. +++ ++.+.-+. +..+.||+||+++++++
T Consensus 127 ~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVT 163 (443)
T ss_dssp EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-
T ss_pred CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEe
Confidence 3777777 554 44455444 57899999999999996
No 262
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=25.77 E-value=2.9e+02 Score=27.44 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=53.4
Q ss_pred eeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCce
Q 012630 95 YTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPST 174 (459)
Q Consensus 95 ~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~ 174 (459)
+..-+|++|+..||+..+. .++.|+...|...-+..+.- .+. + ..+-.+-|+|.+. .
T Consensus 13 itchAwn~drt~iAv~~~~-------------~evhiy~~~~~~~w~~~htl-s~H-----d---~~vtgvdWap~sn-r 69 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNN-------------HEVHIYSMLGADLWEPAHTL-SEH-----D---KIVTGVDWAPKSN-R 69 (361)
T ss_pred eeeeeecCCCceEEeccCC-------------ceEEEEEecCCCCceeceeh-hhh-----C---cceeEEeecCCCC-c
Confidence 4678999999999998643 67788876665522222211 111 1 1233579999988 6
Q ss_pred EEEEEeccCCccccccCCCCeEEeccCCCCCCCCceE---eccccceeccceeCCCC
Q 012630 175 LYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEI---LHKLDLRFRGVSWCDDS 228 (459)
Q Consensus 175 l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~---L~~~~~~~~~~~Ws~D~ 228 (459)
|+-. .+|.+ ..||...- |++-+. |.........+.|+|.+
T Consensus 70 Ivtc-s~drn---------ayVw~~~~----~~~WkptlvLlRiNrAAt~V~WsP~e 112 (361)
T KOG1523|consen 70 IVTC-SHDRN---------AYVWTQPS----GGTWKPTLVLLRINRAATCVKWSPKE 112 (361)
T ss_pred eeEc-cCCCC---------ccccccCC----CCeeccceeEEEeccceeeEeecCcC
Confidence 6633 22222 23444322 223322 22233335668999874
No 263
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=25.75 E-value=6.6e+02 Score=24.83 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=37.5
Q ss_pred hhcceEEEcCCCceeecC----CCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-Cceee
Q 012630 73 TTTQLVLATLDGTVKEFG----PPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVR 140 (459)
Q Consensus 73 ~~sqL~~v~~~G~~~~l~----~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~ 140 (459)
...||+++.+.|.-..+. ..+.+.++.|++||+.|+-.+. .+.+..||++ |+.++
T Consensus 67 ~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt-------------Dk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT-------------DKTVRGWDAETGKRIR 126 (338)
T ss_pred CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC-------------CceEEEEecccceeee
Confidence 345777777756544332 3456689999999999866643 3778899976 54444
No 264
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.54 E-value=3.8e+02 Score=29.84 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=60.0
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCc--eeeeeecccccccccccccccccceeeeEEec
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGK--FVRQLCELPLVENIPIAYNSVREGMRLISWRA 169 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~--~~~~lt~~p~~~~~P~~~~~~~~~~r~~~Wsp 169 (459)
-..+.+++|||--.+..+.... ..-+++||+.-- -.+++ .+=...+--..|+|
T Consensus 176 SESiRDV~fsp~~~~~F~s~~d------------sG~lqlWDlRqp~r~~~k~-------------~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHD------------SGYLQLWDLRQPDRCEKKL-------------TAHNGPVLCLNWHP 230 (839)
T ss_pred chhhhceeeccCCCceEEEecC------------CceEEEeeccCchhHHHHh-------------hcccCceEEEeecC
Confidence 4456789999976554333211 356788886411 01112 22233445779999
Q ss_pred CCCceEEEEEeccCCccccccCCC-CeEEeccCCCCCCCCceEec--cccceeccceeCCCC-cEEEEEeecCCccEEEE
Q 012630 170 DRPSTLYWVETQDGGAAKVEVSPR-DIIYTQPAEPVEGEEPEILH--KLDLRFRGVSWCDDS-LALVQETWFKTTQTRTW 245 (459)
Q Consensus 170 Dg~~~l~~~~~~d~g~~~~~~~~~-~~l~~~~~~pf~g~~~~~L~--~~~~~~~~~~Ws~D~-~al~~~~~~~~~~~~ly 245 (459)
++. .|+ .|+ | ..|.+++. +++++..+. .+....+.+.|-|+. ..|....-..+...+||
T Consensus 231 nr~-~lA------TGG-------RDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 231 NRE-WLA------TGG-------RDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVW 293 (839)
T ss_pred CCc-eee------ecC-------CCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEE
Confidence 866 555 222 2 24555555 433444332 345556778999874 33333222234455566
Q ss_pred EE
Q 012630 246 LI 247 (459)
Q Consensus 246 ~v 247 (459)
-|
T Consensus 294 Dv 295 (839)
T KOG0269|consen 294 DV 295 (839)
T ss_pred ee
Confidence 55
No 265
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=25.40 E-value=6.8e+02 Score=24.90 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=21.6
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCC
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADG 136 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g 136 (459)
..+-+..|+-+||||+-+- ....+.+|.+..
T Consensus 306 sevcSa~Ftkn~kyiLsSG-------------~DS~vkLWEi~t 336 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSG-------------KDSTVKLWEIST 336 (430)
T ss_pred ceeeeEEEccCCeEEeecC-------------CcceeeeeeecC
Confidence 3456899999999997653 235566776653
No 266
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=25.12 E-value=1.9e+02 Score=27.18 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=46.8
Q ss_pred cceEEEcC-CCceeecCC--CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccc
Q 012630 75 TQLVLATL-DGTVKEFGP--PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENI 151 (459)
Q Consensus 75 sqL~~v~~-~G~~~~l~~--~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~ 151 (459)
|.-.+.|+ +|...|-.. ...+..++|||..-|++--+ | ...|-+-|++|...++|...-+.|..
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s------y-------d~~ikltdlqgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS------Y-------DMKIKLTDLQGDLAHELPIMVVAEHK 319 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec------c-------cceEEEeecccchhhcCceEEEEecc
Confidence 44556666 665544333 34557899999998887664 2 25677889999887777554443332
Q ss_pred cccccccccceeeeEEecC
Q 012630 152 PIAYNSVREGMRLISWRAD 170 (459)
Q Consensus 152 P~~~~~~~~~~r~~~WspD 170 (459)
.-.-...|.|.
T Consensus 320 --------dk~i~~rwh~~ 330 (350)
T KOG0641|consen 320 --------DKAIQCRWHPQ 330 (350)
T ss_pred --------CceEEEEecCc
Confidence 12235577776
No 267
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=25.06 E-value=5.3e+02 Score=25.46 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=25.7
Q ss_pred ceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceee
Q 012630 93 AIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVR 140 (459)
Q Consensus 93 ~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~ 140 (459)
..++++++||.+..||+.+- ...+-+|+....+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssW-------------DgslrlYdv~~~~l~ 48 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSW-------------DGSLRLYDVPANSLK 48 (323)
T ss_pred hceeeEEEcCcCCcEEEEec-------------cCcEEEEeccchhhh
Confidence 45689999999999999972 356677776655443
No 268
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=24.82 E-value=87 Score=31.75 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=27.6
Q ss_pred hhcceEEEcC-CCceeecCCC-ceeeecccCCCCCeEEEEE
Q 012630 73 TTTQLVLATL-DGTVKEFGPP-AIYTAVEPSPDQKYILITS 111 (459)
Q Consensus 73 ~~sqL~~v~~-~G~~~~l~~~-~~~~~~~~SPDG~~l~~~~ 111 (459)
.++.|+..|. +.+++-|-+. ....++++||||.+++|.-
T Consensus 197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEe
Confidence 5667777777 5555555443 3335899999999999884
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=24.54 E-value=2.4e+02 Score=29.42 Aligned_cols=76 Identities=24% Similarity=0.464 Sum_probs=36.0
Q ss_pred eEEEecC-CceeeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCC-----
Q 012630 129 VQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAE----- 202 (459)
Q Consensus 129 ~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~----- 202 (459)
+.++|.+ +..++++.-. +++.+.||+||. .++.+- .+.+|++...
T Consensus 128 i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~~g~-~val~t-------------~~~i~il~~~~~~~~ 178 (443)
T PF04053_consen 128 ICFYDWETGKLIRRIDVS---------------AVKYVIWSDDGE-LVALVT-------------KDSIYILKYNLEAVA 178 (443)
T ss_dssp EEEE-TTT--EEEEESS----------------E-EEEEE-TTSS-EEEEE--------------S-SEEEEEE-HHHHH
T ss_pred EEEEEhhHcceeeEEecC---------------CCcEEEEECCCC-EEEEEe-------------CCeEEEEEecchhcc
Confidence 7777765 5555655321 257899999998 666542 2234444330
Q ss_pred --CCCCCC-ceEecc-ccceeccceeCCCCcEEEEEe
Q 012630 203 --PVEGEE-PEILHK-LDLRFRGVSWCDDSLALVQET 235 (459)
Q Consensus 203 --pf~g~~-~~~L~~-~~~~~~~~~Ws~D~~al~~~~ 235 (459)
+-+|-+ .-.+.. ...++....|-.| +|+|..
T Consensus 179 ~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 179 AIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp HBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred cccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 112211 223322 2556777889877 788765
No 270
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=24.54 E-value=1.5e+02 Score=33.30 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=69.1
Q ss_pred CCCCCeEeecCCCcccccccccccCCCh--hhHHHHHHHhhcceEEEcC--CC-cee-----ecCCCceeeecccCCCCC
Q 012630 36 VPFGPKIQSNEQQNVIQNRYTEGLLKDE--FDEYLFEHYTTTQLVLATL--DG-TVK-----EFGPPAIYTAVEPSPDQK 105 (459)
Q Consensus 36 ~~~~p~i~~~~~~~~~~~rt~~d~l~~~--~D~~~f~~~~~sqL~~v~~--~G-~~~-----~l~~~~~~~~~~~SPDG~ 105 (459)
|..|-.|+++...+-.+.+.+.+--|.. ..+.-|.=+....|++||. .| ++. +......++.++-+-+|
T Consensus 511 Le~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G- 589 (794)
T PF08553_consen 511 LERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG- 589 (794)
T ss_pred cCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-
Confidence 4778889998854433344443322211 1356666677788999998 55 222 23334456677777888
Q ss_pred eEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCceEE
Q 012630 106 YILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLY 176 (459)
Q Consensus 106 ~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~ 176 (459)
+||+.+.. .+|-++|..|...+ |.+|. +...+..+--+.||++.|+
T Consensus 590 ~iavgs~~-------------G~IRLyd~~g~~AK--T~lp~----------lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 590 YIAVGSNK-------------GDIRLYDRLGKRAK--TALPG----------LGDPIIGIDVTADGKWILA 635 (794)
T ss_pred eEEEEeCC-------------CcEEeecccchhhh--hcCCC----------CCCCeeEEEecCCCcEEEE
Confidence 57777643 67788886664433 33332 2334557788899995554
No 271
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=24.30 E-value=8.5e+02 Score=25.60 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=50.3
Q ss_pred hhcceEEEcCCCceeecCCCceeee--cccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeeccccccc
Q 012630 73 TTTQLVLATLDGTVKEFGPPAIYTA--VEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVEN 150 (459)
Q Consensus 73 ~~sqL~~v~~~G~~~~l~~~~~~~~--~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~ 150 (459)
..+.++++|..|.+|-......... +..-+||.+|.... ..+..+|..|+.++.. .+|...
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---------------~~~~e~D~~G~v~~~~-~l~~~~- 188 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---------------NRLYEIDLLGKVIWEY-DLPGGY- 188 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB---------------TEEEEE-TT--EEEEE-E--TTE-
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC---------------CceEEEcCCCCEEEee-ecCCcc-
Confidence 5678999999999884333221222 66789999876553 5677888888866552 322100
Q ss_pred ccccccccccceeeeEEecCCCceEEEEEeccCCc-cccccCCCCeEEeccCCCCCCCCceEe
Q 012630 151 IPIAYNSVREGMRLISWRADRPSTLYWVETQDGGA-AKVEVSPRDIIYTQPAEPVEGEEPEIL 212 (459)
Q Consensus 151 ~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~-~~~~~~~~~~l~~~~~~pf~g~~~~~L 212 (459)
..-.+++.+-|+|. .|+.+......+ ........|.|..++. +| +....
T Consensus 189 --------~~~HHD~~~l~nGn-~L~l~~~~~~~~~~~~~~~~~D~Ivevd~---tG-~vv~~ 238 (477)
T PF05935_consen 189 --------YDFHHDIDELPNGN-LLILASETKYVDEDKDVDTVEDVIVEVDP---TG-EVVWE 238 (477)
T ss_dssp --------E-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-EEEEE-T---TS--EEEE
T ss_pred --------cccccccEECCCCC-EEEEEeecccccCCCCccEecCEEEEECC---CC-CEEEE
Confidence 11235778889988 665554211000 0011133567777766 55 55444
No 272
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.99 E-value=1.3e+02 Score=32.90 Aligned_cols=52 Identities=12% Similarity=0.328 Sum_probs=34.6
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC-CceeeeeecccccccccccccccccceeeeEEecCCC
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRP 172 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~ 172 (459)
-+.++.+-|||..|++.. ..+++|+|.. |+....|-.. ..-+.-++||-||+
T Consensus 14 ci~d~afkPDGsqL~lAA--------------g~rlliyD~ndG~llqtLKgH-------------KDtVycVAys~dGk 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--------------GSRLLVYDTSDGTLLQPLKGH-------------KDTVYCVAYAKDGK 66 (1081)
T ss_pred chheeEECCCCceEEEec--------------CCEEEEEeCCCcccccccccc-------------cceEEEEEEccCCc
Confidence 457899999999998775 2568899865 6555444221 12334567777776
No 273
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=23.95 E-value=75 Score=32.78 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=23.6
Q ss_pred eeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce
Q 012630 95 YTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF 138 (459)
Q Consensus 95 ~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~ 138 (459)
+..++.||||+|||+.- +.+.+.||+.+..+
T Consensus 205 il~~avS~Dgkylatgg-------------~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGG-------------RDRHVQIWDCDTLE 235 (479)
T ss_pred eEEEEEcCCCcEEEecC-------------CCceEEEecCcccc
Confidence 45889999999998773 45778899876443
No 274
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=23.85 E-value=2.7e+02 Score=27.31 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCCceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEec-CCceeeee
Q 012630 90 GPPAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTA-DGKFVRQL 142 (459)
Q Consensus 90 ~~~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~-~g~~~~~l 142 (459)
+.-+.+..+.||+|+|+|+-.+. ...+-|||. .+.++..|
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSq-------------DGklIvWDs~TtnK~hai 93 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQ-------------DGKLIVWDSFTTNKVHAI 93 (343)
T ss_pred ccccceeeeEecCCcCeEEeecc-------------CCeEEEEEcccccceeEE
Confidence 34566789999999999966653 367888984 45555544
No 275
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.62 E-value=3.2e+02 Score=28.91 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHhhcceEEEcC-CC-ceeecCC-CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCce
Q 012630 62 DEFDEYLFEHYTTTQLVLATL-DG-TVKEFGP-PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKF 138 (459)
Q Consensus 62 ~~~D~~~f~~~~~sqL~~v~~-~G-~~~~l~~-~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~ 138 (459)
++--...|.-...+.|.++|+ +- -+|+|.. +...+.+.+|+||..|.-- +....+--||+..
T Consensus 518 spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG-------------GlDntvRcWDlre-- 582 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG-------------GLDNTVRCWDLRE-- 582 (705)
T ss_pred CCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC-------------CCccceeehhhhh--
Confidence 333366788888999999999 54 5667754 5566899999999998322 2245566677642
Q ss_pred eeeeecccccccccccccccccceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEeccccce
Q 012630 139 VRQLCELPLVENIPIAYNSVREGMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHKLDLR 218 (459)
Q Consensus 139 ~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~~~~~ 218 (459)
.+++.+..+ ...+-++...|.+. +|+.-+. ...+.++.. .+.+..+|..-+.-
T Consensus 583 grqlqqhdF-----------~SQIfSLg~cP~~d-WlavGMe------------ns~vevlh~---skp~kyqlhlheSc 635 (705)
T KOG0639|consen 583 GRQLQQHDF-----------SSQIFSLGYCPTGD-WLAVGME------------NSNVEVLHT---SKPEKYQLHLHESC 635 (705)
T ss_pred hhhhhhhhh-----------hhhheecccCCCcc-ceeeecc------------cCcEEEEec---CCccceeecccccE
Confidence 233322211 22333567788888 4442221 235666666 55455555432322
Q ss_pred eccceeCCCCcEEEEE
Q 012630 219 FRGVSWCDDSLALVQE 234 (459)
Q Consensus 219 ~~~~~Ws~D~~al~~~ 234 (459)
.-.+-++.=|..|++.
T Consensus 636 VLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVST 651 (705)
T ss_pred EEEEEecccCceeeec
Confidence 3334444445555543
No 276
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=1.2e+02 Score=32.69 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=21.9
Q ss_pred eecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecC
Q 012630 96 TAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTAD 135 (459)
Q Consensus 96 ~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~ 135 (459)
.++.|-|||+.|||--. ...|-+.|++
T Consensus 66 ~sL~W~~DGkllaVg~k-------------dG~I~L~Dve 92 (665)
T KOG4640|consen 66 ASLCWRPDGKLLAVGFK-------------DGTIRLHDVE 92 (665)
T ss_pred eeeeecCCCCEEEEEec-------------CCeEEEEEcc
Confidence 48999999999988742 3778888876
No 277
>PRK10162 acetyl esterase; Provisional
Probab=22.62 E-value=1.6e+02 Score=28.97 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=31.1
Q ss_pred CceEEEEEECCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCCccC
Q 012630 398 LQKELIKYQRKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPGEFR 443 (459)
Q Consensus 398 ~~~E~i~yks~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~e~~ 443 (459)
...|.++.+..+| +|...+|.|.. + ..|+|||+...-|.
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~----~--~~p~vv~~HGGg~~ 93 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP----D--SQATLFYLHGGGFI 93 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC----C--CCCEEEEEeCCccc
Confidence 3578888998888 69999999952 2 36999999997764
No 278
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=2.2e+02 Score=29.09 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.5
Q ss_pred CceeeecccCCCCCeEEEEEec
Q 012630 92 PAIYTAVEPSPDQKYILITSID 113 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~ 113 (459)
...++++..|+||+++++-++.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccC
Confidence 3467899999999999999754
No 279
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=21.92 E-value=2.2e+02 Score=29.19 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=61.3
Q ss_pred CceeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCC
Q 012630 92 PAIYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADR 171 (459)
Q Consensus 92 ~~~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg 171 (459)
...+..+.|+|+|.+||-.+.. ..+.++|+.. .+.|- .+-+-...++.+.|+|--
T Consensus 264 KntVl~~~f~~n~N~Llt~skD-------------~~~kv~DiR~--mkEl~----------~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKD-------------QSCKVFDIRT--MKELF----------TYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCC-------------ceEEEEehhH--hHHHH----------Hhhcchhhheeecccccc
Confidence 4456799999999999888632 4456777541 11110 111223456788999988
Q ss_pred CceEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceEecc--ccceeccceeCCCCcEEEEEeecCCccEEEEEEc
Q 012630 172 PSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEILHK--LDLRFRGVSWCDDSLALVQETWFKTTQTRTWLIS 248 (459)
Q Consensus 172 ~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~L~~--~~~~~~~~~Ws~D~~al~~~~~~~~~~~~ly~v~ 248 (459)
+..+. +..-|+ .|+-..+ ...+|..... -+..+..++|.|=|..|.... +++..+.|.-+
T Consensus 319 ~~lft-sgg~Dg-----------svvh~~v---~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 ESLFT-SGGSDG-----------SVVHWVV---GLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRN 380 (464)
T ss_pred cccee-eccCCC-----------ceEEEec---cccccccCCCcccccceeeeeccccceeEeecC--CCcceeeeccC
Confidence 84333 222111 2222222 1113332221 233456678888786666533 35556666544
No 280
>PRK13613 lipoprotein LpqB; Provisional
Probab=21.80 E-value=8.2e+02 Score=26.71 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=40.9
Q ss_pred ceeeeEEecCCCceEEEEEeccCCccccccCCCCeEEeccCCCCCC----CCceEeccccceeccceeCCCC-cEEEEEe
Q 012630 161 GMRLISWRADRPSTLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEG----EEPEILHKLDLRFRGVSWCDDS-LALVQET 235 (459)
Q Consensus 161 ~~r~~~WspDg~~~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g----~~~~~L~~~~~~~~~~~Ws~D~-~al~~~~ 235 (459)
.+..+.-|+||- +++.+...+++. .. .|-.+-. .-+| .+++.|...-.....+.|..++ ++++...
T Consensus 456 ~I~~lrvSrDG~-RvAvv~~~~g~~-~v------~va~V~R-~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~ 526 (599)
T PRK13613 456 RVVAVRVARDGV-RVALIVEKDGRR-SL------QIGRIVR-DAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGRE 526 (599)
T ss_pred EeEEEEECCCcc-EEEEEEecCCCc-EE------EEEEEEe-CCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEecc
Confidence 467899999999 666654322221 11 1111211 0022 1233333222235668999876 4444432
Q ss_pred ecCCccEEEEEEcCCCC
Q 012630 236 WFKTTQTRTWLISPGSK 252 (459)
Q Consensus 236 ~~~~~~~~ly~v~~~~~ 252 (459)
.....-+|.+++++.
T Consensus 527 --~~~~~~v~~v~vdG~ 541 (599)
T PRK13613 527 --EGGVQQARYVQVDGS 541 (599)
T ss_pred --CCCCcceEEEecCCc
Confidence 233455888888743
No 281
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.14 E-value=9.7e+02 Score=25.14 Aligned_cols=158 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred eeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCce
Q 012630 95 YTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPST 174 (459)
Q Consensus 95 ~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~~ 174 (459)
+.++.+--||+-||.--.. ..+.|+|.....+...-. +-...++...++|++. +
T Consensus 71 v~s~~fR~DG~LlaaGD~s-------------G~V~vfD~k~r~iLR~~~------------ah~apv~~~~f~~~d~-t 124 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDES-------------GHVKVFDMKSRVILRQLY------------AHQAPVHVTKFSPQDN-T 124 (487)
T ss_pred eeEEEeecCCeEEEccCCc-------------CcEEEeccccHHHHHHHh------------hccCceeEEEecccCC-e
Q ss_pred EEEEEeccCCccccccCCCCeEEeccCCCCCCCCce-EeccccceeccceeCC-CCcEEEEEeecCCccEEEEEEcCCCC
Q 012630 175 LYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPE-ILHKLDLRFRGVSWCD-DSLALVQETWFKTTQTRTWLISPGSK 252 (459)
Q Consensus 175 l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~-~L~~~~~~~~~~~Ws~-D~~al~~~~~~~~~~~~ly~v~~~~~ 252 (459)
++-....|. .+..+++ +++... .|........-.+|+| ++..+++..+ +...++|-.-..+.
T Consensus 125 ~l~s~sDd~-----------v~k~~d~---s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY--Dg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 125 MLVSGSDDK-----------VVKYWDL---STAYVQAELSGHTDYVRCGDISPANDHIVVTGSY--DGKVRLWDTRSLTS 188 (487)
T ss_pred EEEecCCCc-----------eEEEEEc---CCcEEEEEecCCcceeEeeccccCCCeEEEecCC--CceEEEEEeccCCc
Q ss_pred CCCceEEeecCCCCccCCCCCCCeeeCCCCCEEEEEeeeccCCCcEEEEEcCCCCCCCCcceEEEEECCCCceE
Q 012630 253 DTAPLILFDRSSEDVYSDPGLPMMRKSSTGTRVIAKIKKENDQGTYILLNGRGATPEGDVPFLDLFNINTGSKE 326 (459)
Q Consensus 253 ~~~~~~l~d~~~~d~y~~pg~~~~~~~~dg~~v~~~~~~~~~~~~~ly~~~~g~s~~gd~~~l~~~~l~tg~~~ 326 (459)
.. .-| +.|.|+ ..|++.. +..++.++.|.+ +-.+|+.+|...
T Consensus 189 ~v--~el----------nhg~pV-------e~vl~lp------sgs~iasAgGn~-------vkVWDl~~G~ql 230 (487)
T KOG0310|consen 189 RV--VEL----------NHGCPV-------ESVLALP------SGSLIASAGGNS-------VKVWDLTTGGQL 230 (487)
T ss_pred ee--EEe----------cCCCce-------eeEEEcC------CCCEEEEcCCCe-------EEEEEecCCcee
No 282
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=21.11 E-value=2.4e+02 Score=19.12 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=20.4
Q ss_pred eeecccCCCCC--eEEEEEeccCcccccccCCCCcceEEEecC-Cceeee
Q 012630 95 YTAVEPSPDQK--YILITSIDRPYSFTVSYTKFPQKVQVWTAD-GKFVRQ 141 (459)
Q Consensus 95 ~~~~~~SPDG~--~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~-g~~~~~ 141 (459)
+....+||+.. -|++.+.. ...+.|+|+. +-..+|
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~------------~g~vhi~D~R~~f~~~Q 40 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEH------------QGRVHIVDTRSNFMRRQ 40 (43)
T ss_pred eEEEEeCCCCCcccEEEEEcc------------CCeEEEEEcccCccceE
Confidence 46788998654 44444322 3567888866 444443
No 283
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=8.8e+02 Score=24.49 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=66.1
Q ss_pred eeeecccCCCCCeEEEEEeccCcccccccCCCCcceEEEecCCceeeeeecccccccccccccccccceeeeEEecCCCc
Q 012630 94 IYTAVEPSPDQKYILITSIDRPYSFTVSYTKFPQKVQVWTADGKFVRQLCELPLVENIPIAYNSVREGMRLISWRADRPS 173 (459)
Q Consensus 94 ~~~~~~~SPDG~~l~~~~~~~p~s~~v~~~~~~~~~~v~d~~g~~~~~lt~~p~~~~~P~~~~~~~~~~r~~~WspDg~~ 173 (459)
.-..+.++|||+++.+.-.. .+...+.++|.....+..- .|..+ .+..+..+|+|.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~----------~~~~~vsvid~~t~~~~~~--~~vG~-----------~P~~~a~~p~g~- 172 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG----------NGNNTVSVIDAATNKVTAT--IPVGN-----------TPTGVAVDPDGN- 172 (381)
T ss_pred CCceEEECCCCCEEEEEecc----------cCCceEEEEeCCCCeEEEE--EecCC-----------CcceEEECCCCC-
Confidence 34689999999999777421 1357788888664433322 22111 224678999988
Q ss_pred eEEEEEeccCCccccccCCCCeEEeccCCCCCCCCceE-----eccccceeccceeCCCC-cEEEEEeecCCccEEEEEE
Q 012630 174 TLYWVETQDGGAAKVEVSPRDIIYTQPAEPVEGEEPEI-----LHKLDLRFRGVSWCDDS-LALVQETWFKTTQTRTWLI 247 (459)
Q Consensus 174 ~l~~~~~~d~g~~~~~~~~~~~l~~~~~~pf~g~~~~~-----L~~~~~~~~~~~Ws~D~-~al~~~~~~~~~~~~ly~v 247 (459)
.++-+. . ..+.|..++. .+..... .......-.++.+++|| .+++.... .....+..+
T Consensus 173 ~vyv~~---~--------~~~~v~vi~~---~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~--~~~~~v~~i 236 (381)
T COG3391 173 KVYVTN---S--------DDNTVSVIDT---SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG--SGSNNVLKI 236 (381)
T ss_pred eEEEEe---c--------CCCeEEEEeC---CCcceeccccccccccCCCCceEEECCCCCEEEEEecc--CCCceEEEE
Confidence 555332 1 1345666665 4312221 11122233557889987 45555432 112457788
Q ss_pred cCCCC
Q 012630 248 SPGSK 252 (459)
Q Consensus 248 ~~~~~ 252 (459)
+..++
T Consensus 237 d~~~~ 241 (381)
T COG3391 237 DTATG 241 (381)
T ss_pred eCCCc
Confidence 87653
No 284
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=20.58 E-value=95 Score=32.55 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=25.5
Q ss_pred CCCCcEEEEEEEccCCCCCCCCCCceEEEEEcCCccCCc
Q 012630 407 RKDGVQLTAKLYLPTGYDPSKDGHLLCLFWAYPGEFRSK 445 (459)
Q Consensus 407 s~DG~~l~g~L~lP~~yd~~k~~kyP~Il~~Yp~e~~~~ 445 (459)
+.|- |.--++.|.+..+++ ++|+|||+|..-|...
T Consensus 75 sEdc--l~l~i~~p~~~~~~~--~~pv~v~ihGG~~~~g 109 (493)
T cd00312 75 SEDC--LYLNVYTPKNTKPGN--SLPVMVWIHGGGFMFG 109 (493)
T ss_pred CCcC--CeEEEEeCCCCCCCC--CCCEEEEEcCCccccC
Confidence 5675 445788898765444 8999999999877543
No 285
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=20.56 E-value=2.7e+02 Score=27.63 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=30.9
Q ss_pred HHhhcceEEEcCCCc-eeecCC----CceeeecccCCCCCeEEEEE
Q 012630 71 HYTTTQLVLATLDGT-VKEFGP----PAIYTAVEPSPDQKYILITS 111 (459)
Q Consensus 71 ~~~~sqL~~v~~~G~-~~~l~~----~~~~~~~~~SPDG~~l~~~~ 111 (459)
-.+..-++++.+.|. ++-|++ ++.+....+||-|.+|....
T Consensus 411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred EcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 446678899999665 555664 45667899999999997774
Done!