Query 012632
Match_columns 459
No_of_seqs 338 out of 1968
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.7 1.6E-17 3.6E-22 129.3 6.5 59 158-217 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.7 3.6E-17 7.8E-22 129.0 6.4 63 251-313 1-63 (64)
3 smart00380 AP2 DNA-binding dom 99.7 6.4E-17 1.4E-21 127.6 7.6 61 159-220 1-63 (64)
4 cd00018 AP2 DNA-binding domain 99.7 5.2E-17 1.1E-21 126.5 6.8 61 250-310 1-61 (61)
5 PHA00280 putative NHN endonucl 99.4 3.1E-13 6.8E-18 120.2 7.8 65 146-211 55-119 (121)
6 PHA00280 putative NHN endonucl 99.3 1.4E-11 3.1E-16 109.7 8.6 104 194-304 11-119 (121)
7 PF00847 AP2: AP2 domain; Int 99.1 2.9E-10 6.3E-15 86.5 5.8 50 158-207 1-55 (56)
8 PF00847 AP2: AP2 domain; Int 98.8 1.6E-08 3.5E-13 77.0 6.6 52 250-301 1-56 (56)
9 cd04518 TBP_archaea archaeal T 80.5 52 0.0011 31.4 13.4 134 158-299 34-172 (174)
10 cd00652 TBP_TLF TATA box bindi 80.0 51 0.0011 31.3 13.1 134 158-298 34-172 (174)
11 cd04517 TLF TBP-like factors ( 74.6 72 0.0016 30.3 12.5 132 159-297 35-171 (174)
12 PRK00394 transcription factor; 60.4 1.6E+02 0.0035 28.2 12.6 135 158-299 33-173 (179)
13 PLN00062 TATA-box-binding prot 53.8 2.1E+02 0.0046 27.5 12.8 134 158-298 34-171 (179)
14 cd04516 TBP_eukaryotes eukaryo 53.5 2.1E+02 0.0045 27.3 12.5 132 158-295 34-168 (174)
15 PF08846 DUF1816: Domain of un 48.4 27 0.00059 28.9 3.8 31 262-292 9-39 (68)
16 PF14657 Integrase_AP2: AP2-li 38.6 84 0.0018 23.2 4.9 36 171-206 1-42 (46)
17 PF14657 Integrase_AP2: AP2-li 32.7 1.2E+02 0.0027 22.3 5.0 38 262-299 1-42 (46)
18 PRK10927 essential cell divisi 29.1 2.5E+02 0.0054 29.7 8.1 22 275-296 285-306 (319)
19 PRK10545 nucleotide excision r 25.1 1.6E+02 0.0035 30.4 5.9 25 182-206 140-164 (286)
20 PF00352 TBP: Transcription fa 22.9 2.2E+02 0.0048 23.6 5.4 46 159-205 37-82 (86)
21 KOG3302 TATA-box binding prote 20.5 8.6E+02 0.019 24.2 9.7 118 158-280 55-175 (200)
22 PF05036 SPOR: Sporulation rel 20.3 68 0.0015 24.5 1.7 22 274-295 44-65 (76)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.71 E-value=1.6e-17 Score=129.33 Aligned_cols=59 Identities=53% Similarity=0.896 Sum_probs=55.5
Q ss_pred CCeEEEEEecCCCeEEEEeecC--CeEEEeCCCCCHHHHHHHHHHHHHHhcCcccCcccccc
Q 012632 158 SQYRGVTFYRRTGRWESHIWDS--GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE 217 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~--gK~i~LGtFdTeEEAARAYD~Aaikl~G~~A~~NFp~s 217 (459)
|+|+||++++. |||+|+|+++ +|++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 1 s~~~GV~~~~~-gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPW-GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCC-CcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 68999997654 9999999999 99999999999999999999999999999999999863
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.69 E-value=3.6e-17 Score=129.01 Aligned_cols=63 Identities=52% Similarity=0.769 Sum_probs=59.3
Q ss_pred CCcCceeeecceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCccch
Q 012632 251 KYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQ 313 (459)
Q Consensus 251 kYRGV~~~k~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl~G~~A~tNFp~s~Y~ 313 (459)
+|+||+++++|+|+|+|+...+++.++||+|+|+||||+|||.|+++++|..+.+|||.+.|+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 589999988999999997666899999999999999999999999999999999999999985
No 3
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.69 E-value=6.4e-17 Score=127.60 Aligned_cols=61 Identities=57% Similarity=0.945 Sum_probs=57.7
Q ss_pred CeEEEEEecCCCeEEEEeec--CCeEEEeCCCCCHHHHHHHHHHHHHHhcCcccCcccccccch
Q 012632 159 QYRGVTFYRRTGRWESHIWD--SGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYE 220 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~--~gK~i~LGtFdTeEEAARAYD~Aaikl~G~~A~~NFp~sdYe 220 (459)
+|+||++ +++|||+|+|++ .+++++||+|+|+||||+|||.|+++++|..+.+|||.++|+
T Consensus 1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 5899997 566999999999 899999999999999999999999999999999999999986
No 4
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.69 E-value=5.2e-17 Score=126.52 Aligned_cols=61 Identities=52% Similarity=0.797 Sum_probs=56.2
Q ss_pred CCCcCceeeecceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 012632 250 SKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (459)
Q Consensus 250 SkYRGV~~~k~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl~G~~A~tNFp~s 310 (459)
|+|+||+++++|+|+|+|+....++.++||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999988999999996544499999999999999999999999999999999999874
No 5
>PHA00280 putative NHN endonuclease
Probab=99.43 E-value=3.1e-13 Score=120.23 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=58.9
Q ss_pred cccCCCCCCCCCCCeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcCcccC
Q 012632 146 LKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEAD 211 (459)
Q Consensus 146 ~kr~rr~~r~rtSgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G~~A~ 211 (459)
..++++..+.++|||+||+|++..+||+|+|+++||+++||.|+++|+|+.||+ |+.+|+|.+|+
T Consensus 55 N~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 55 NSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred HhcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 455666778899999999999999999999999999999999999999999997 77889997764
No 6
>PHA00280 putative NHN endonuclease
Probab=99.27 E-value=1.4e-11 Score=109.67 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCcccC---cccc-cccchhhhhhccccchhhhhhhhccccCCCCCCCCCCcCceeee-cceEEEEec
Q 012632 194 AARAYDRAAIKFRGAEAD---INFS-IEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMG 268 (459)
Q Consensus 194 AARAYD~Aaikl~G~~A~---~NFp-~sdYeeeLkqmreLSKEE~VqaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~ 268 (459)
+-+++..+...++|.-.. +.+- ....+..+..|+.+|..+...+.+.. ..++|+|+||+|++ .|||+|+|
T Consensus 11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I- 85 (121)
T PHA00280 11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTV- 85 (121)
T ss_pred hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEE-
Confidence 456777788888884331 2221 12233567788888888888876544 46789999999986 79999999
Q ss_pred cccCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCC
Q 012632 269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAV 304 (459)
Q Consensus 269 ~~~~gK~v~LGtFdTeEEAARAYD~AAikl~G~~A~ 304 (459)
..++|.++||.|+|+|+|+.||+ ++.+++|..|.
T Consensus 86 -~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 86 -TAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred -EECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 68999999999999999999997 77899998764
No 7
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.06 E-value=2.9e-10 Score=86.54 Aligned_cols=50 Identities=34% Similarity=0.557 Sum_probs=46.7
Q ss_pred CCeEEEEEecCCCeEEEEeecC-----CeEEEeCCCCCHHHHHHHHHHHHHHhcC
Q 012632 158 SQYRGVTFYRRTGRWESHIWDS-----GKQVYLGGFDTAHAAARAYDRAAIKFRG 207 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~-----gK~i~LGtFdTeEEAARAYD~Aaikl~G 207 (459)
|+|+||+|++..++|+|.|++. +|.++||.|+++++|++|++.+++.++|
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~ 55 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEG 55 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999883 4899999999999999999999999887
No 8
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=98.78 E-value=1.6e-08 Score=76.97 Aligned_cols=52 Identities=37% Similarity=0.554 Sum_probs=45.1
Q ss_pred CCCcCceeee-cceEEEEecccc-C--CeeEeeccCCCHHHHHHHHHHHHHHhcCC
Q 012632 250 SKYRGVTLHK-CGRWEARMGQFL-G--KKYVYLGLFDTEVEAARAYDRAAVKCNGK 301 (459)
Q Consensus 250 SkYRGV~~~k-~GKW~ArI~~~~-~--gK~v~LGtFdTeEEAARAYD~AAikl~G~ 301 (459)
|+|+||++++ .++|+|+|+... + ++.++||.|++++||++||+.+.++++|.
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 6899999986 899999997532 1 49999999999999999999999999863
No 9
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=80.45 E-value=52 Score=31.36 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=81.9
Q ss_pred CCeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcCcc--c--Ccccccccchhhhhhccccchhh
Q 012632 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAE--A--DINFSIEDYEDDLKQMSNLTKEE 233 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G~~--A--~~NFp~sdYeeeLkqmreLSKEE 233 (459)
.+|-||.++-+.-+=.+.|+..||-+--|. .++++|..|-++.+..+.... . ..+|..........--..+..+.
T Consensus 34 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa-ks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L~~ 112 (174)
T cd04518 34 DQFPGLVYRLEDPKIAALIFRSGKMVCTGA-KSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLDA 112 (174)
T ss_pred CcCcEEEEEccCCcEEEEEECCCeEEEEcc-CCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCHHH
Confidence 568899987777788899999998877775 678888888888776664422 1 12332222111100001122222
Q ss_pred hhhhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 012632 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN 299 (459)
Q Consensus 234 ~VqaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl~ 299 (459)
+...++ .. .=...+|-|+..+- .-+=.+-| +..||-+..|. .+++|+.+|.++....+.
T Consensus 113 la~~~~-~~---~YePe~fpglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~ 172 (174)
T cd04518 113 IAIGLP-NA---EYEPEQFPGLVYRLDEPKVVLLL--FSSGKMVITGA-KSEEDAKRAVEKLLSRLK 172 (174)
T ss_pred HHhhCC-CC---ccCcccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 322222 11 11345788987763 34555666 78899888885 568889999888776653
No 10
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=79.99 E-value=51 Score=31.29 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=80.4
Q ss_pred CCeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcCc--cc--Ccccccccchhhhhhccccchhh
Q 012632 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGA--EA--DINFSIEDYEDDLKQMSNLTKEE 233 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G~--~A--~~NFp~sdYeeeLkqmreLSKEE 233 (459)
.+|-||.++...-+=.+.|+..||-+--|. .++++|..|.++.+..+... .. ..||....-......-..+..+.
T Consensus 34 e~fpgli~R~~~P~~t~lIf~sGKivitGa-ks~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~~ 112 (174)
T cd00652 34 KRFPGVIMRLREPKTTALIFSSGKMVITGA-KSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLEE 112 (174)
T ss_pred CccceEEEEcCCCcEEEEEECCCEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHHH
Confidence 468899887777788899999999877776 46778888888776665332 11 23443222111111111122233
Q ss_pred hhhhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 012632 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (459)
Q Consensus 234 ~VqaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl 298 (459)
+....+.... =...+|-|+..+- ..+=.+-| +..||-+..|. .+++|+.+|+++-.-.|
T Consensus 113 la~~~~~~~~---YePe~fpgli~r~~~pk~t~lI--F~sGkvvitGa-ks~~~~~~a~~~i~~~L 172 (174)
T cd00652 113 LALKHPENAS---YEPELFPGLIYRMDEPKVVLLI--FVSGKIVITGA-KSREDIYEAVEKIYPIL 172 (174)
T ss_pred HHhhhhcccE---ECCccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3333332211 1235688888764 34555556 77889888885 56888999987765444
No 11
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=74.55 E-value=72 Score=30.35 Aligned_cols=132 Identities=20% Similarity=0.192 Sum_probs=78.3
Q ss_pred CeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhc--Cccc--Ccccccccchhhhhhccccchhhh
Q 012632 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA--DINFSIEDYEDDLKQMSNLTKEEF 234 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~--G~~A--~~NFp~sdYeeeLkqmreLSKEE~ 234 (459)
+|-||.++-+.-+=.+.|+..||-+--| ..++++|.+|.++.+..+. |-.. ..||....-.+....-..+.-+++
T Consensus 35 ~fpgli~R~~~Pk~t~lIF~sGKiviTG-aks~~~~~~a~~~~~~~l~~~g~~~~~~~~f~v~nIvat~~~~~~i~L~~l 113 (174)
T cd04517 35 RYPKVTMRLREPRATASVWSSGKITITG-ATSEEEAKQAARRAARLLQKLGFKVVRFSNFRVVNVLATCSMPFPIRLDEL 113 (174)
T ss_pred CCCEEEEEecCCcEEEEEECCCeEEEEc-cCCHHHHHHHHHHHHHHHHHcCCCcccCCceEEEEEEEEEeCCCcccHHHH
Confidence 7889998777778889999999876666 4788999999988776663 3221 234433221111111111222222
Q ss_pred hhhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHH
Q 012632 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (459)
Q Consensus 235 VqaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAik 297 (459)
.....+... =...+|-|+..+- ..+=.+.| +..||-+..|. .+++|+.+|++.-.-.
T Consensus 114 a~~~~~~~~---YePE~fPgliyr~~~p~~t~lI--F~sGkivitGa-ks~~~~~~a~~~i~pi 171 (174)
T cd04517 114 AAKNRSSAS---YEPELHPGVVYRITGPRATLSI--FSTGSVTVTGA-RSMEDVREAVEKIYPI 171 (174)
T ss_pred HHhchhhcE---eCCccCCEEEEEECCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 221111111 1235688888764 33445555 78899888885 5678888888765543
No 12
>PRK00394 transcription factor; Reviewed
Probab=60.38 E-value=1.6e+02 Score=28.17 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=80.7
Q ss_pred CCeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--ccc--Ccccccccchhhhhhccccchhh
Q 012632 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AEA--DINFSIEDYEDDLKQMSNLTKEE 233 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G--~~A--~~NFp~sdYeeeLkqmreLSKEE 233 (459)
.+|-|+.++-+.-+=.+.|+..||-+--|.. ++++|..|-++.+..+.. -.. ..+|..........--..+..+.
T Consensus 33 e~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa~-S~~~a~~a~~~~~~~l~~~g~~~~~~~~~~i~NiVas~~l~~~i~L~~ 111 (179)
T PRK00394 33 EQFPGLVYRLEDPKIAALIFRSGKVVCTGAK-SVEDLHEAVKIIIKKLKELGIKVIDEPEIKVQNIVASADLGVELNLNA 111 (179)
T ss_pred ccCceEEEEecCCceEEEEEcCCcEEEEccC-CHHHHHHHHHHHHHHHHHcCCCccCCCceEEEEEEEEEEcCCeEcHHH
Confidence 3577998877777889999999998888875 566788887776655533 221 12333222111000001112222
Q ss_pred hhhhhc-cccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 012632 234 FVHVLR-RQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN 299 (459)
Q Consensus 234 ~VqaLR-RqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl~ 299 (459)
+...+. +.. .=...+|-|+..+- ..+=..-| +..||-+..|. .+++|+.+|.++....+.
T Consensus 112 la~~~~~~~~---~YePe~fPglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~ 173 (179)
T PRK00394 112 IAIGLGLENI---EYEPEQFPGLVYRLDDPKVVVLL--FGSGKLVITGA-KSEEDAEKAVEKILEKLE 173 (179)
T ss_pred HHHhcCcCCc---EECcccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 222220 111 11245788987763 44556666 78899888885 578889999888776653
No 13
>PLN00062 TATA-box-binding protein; Provisional
Probab=53.77 E-value=2.1e+02 Score=27.49 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred CCeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcCcccC---cccccccchhhhhhccccchhhh
Q 012632 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEAD---INFSIEDYEDDLKQMSNLTKEEF 234 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G~~A~---~NFp~sdYeeeLkqmreLSKEE~ 234 (459)
..|-||.++-+.-+=.+.|+..||-+--|. .++|+|..|.++.+..+....-. .||...........-..+..+.+
T Consensus 34 e~fpgli~Rl~~Pk~t~lIF~SGKiviTGa-ks~e~a~~a~~~~~~~L~~lg~~~~~~~f~v~NIvas~~l~~~i~L~~l 112 (179)
T PLN00062 34 KRFAAVIMRIREPKTTALIFASGKMVCTGA-KSEHDSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGL 112 (179)
T ss_pred ccCcEEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcCCCccEEEEEEEEEECCCcccHHHH
Confidence 357799987777788899999998776664 67888888888877666432212 34432221111111111122222
Q ss_pred hhhhccccCCCCCCCCCCcCceeeec-ceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 012632 235 VHVLRRQSTGFPRGSSKYRGVTLHKC-GRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (459)
Q Consensus 235 VqaLRRqS~g~~r~sSkYRGV~~~k~-GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl 298 (459)
....+... .=....|-|+..+-. -+=..-| +..||-+..|. .+++|+..|.+.-.-.|
T Consensus 113 a~~~~~~~---~YePE~fPgliyr~~~pk~~~li--F~sGkvvitGa-ks~~~~~~ai~~i~p~L 171 (179)
T PLN00062 113 AYAHGAFS---SYEPELFPGLIYRMKQPKIVLLI--FVSGKIVITGA-KVREEIYTAFENIYPVL 171 (179)
T ss_pred HHhchhhc---ccCcccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22111111 123457888877642 2344445 78899888885 55777888876654443
No 14
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=53.48 E-value=2.1e+02 Score=27.33 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=75.9
Q ss_pred CCeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcCccc---Ccccccccchhhhhhccccchhhh
Q 012632 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEA---DINFSIEDYEDDLKQMSNLTKEEF 234 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G~~A---~~NFp~sdYeeeLkqmreLSKEE~ 234 (459)
.+|-||.++...-+=.+.|+..||-+--|. .++|+|..|.++.+..+....- ..||...........-..+.-+.+
T Consensus 34 e~fpgli~Rl~~Pk~t~lIF~SGKiviTGa-ks~e~a~~a~~~i~~~L~~~g~~~~~~~~~v~Nivat~~l~~~i~L~~l 112 (174)
T cd04516 34 KRFAAVIMRIREPKTTALIFSSGKMVCTGA-KSEDDSKLAARKYARIIQKLGFPAKFTDFKIQNIVGSCDVKFPIRLEGL 112 (174)
T ss_pred ccCcEEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEEEEEECCCcccHHHH
Confidence 467799887777788899999999887776 4677888888887666633221 134432222111111111222222
Q ss_pred hhhhccccCCCCCCCCCCcCceeeecceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHH
Q 012632 235 VHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAA 295 (459)
Q Consensus 235 VqaLRRqS~g~~r~sSkYRGV~~~k~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AA 295 (459)
....+... .=....|-|+..+-.+ +.+.+-.+..||-+.+|. .+++|+.+|++.-.
T Consensus 113 a~~~~~~~---~YePE~fPgliyr~~~-pk~~~liF~sGkvvitGa-ks~~~~~~a~~~i~ 168 (174)
T cd04516 113 AHAHKQFS---SYEPELFPGLIYRMVK-PKIVLLIFVSGKIVLTGA-KSREEIYQAFENIY 168 (174)
T ss_pred HHhChhcc---EeCCccCceEEEEecC-CcEEEEEeCCCEEEEEec-CCHHHHHHHHHHHH
Confidence 22111111 1134578888776422 333333378899888884 56777888876543
No 15
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=48.43 E-value=27 Score=28.91 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.0
Q ss_pred eEEEEeccccCCeeEeeccCCCHHHHHHHHH
Q 012632 262 RWEARMGQFLGKKYVYLGLFDTEVEAARAYD 292 (459)
Q Consensus 262 KW~ArI~~~~~gK~v~LGtFdTeEEAARAYD 292 (459)
.|.++|.-.......|.|-|.|.+||..+..
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~ 39 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALP 39 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhc
Confidence 5999997556678999999999999988754
No 16
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=38.64 E-value=84 Score=23.23 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=26.8
Q ss_pred eEEEEee--c--CC--eEEEeCCCCCHHHHHHHHHHHHHHhc
Q 012632 171 RWESHIW--D--SG--KQVYLGGFDTAHAAARAYDRAAIKFR 206 (459)
Q Consensus 171 KW~A~I~--~--~g--K~i~LGtFdTeEEAARAYD~Aaikl~ 206 (459)
+|...|. . .| ++++-+.|.|..||-.+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 4666662 2 24 57889999999999999888766553
No 17
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=32.72 E-value=1.2e+02 Score=22.30 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=27.7
Q ss_pred eEEEEec--cccCC--eeEeeccCCCHHHHHHHHHHHHHHhc
Q 012632 262 RWEARMG--QFLGK--KYVYLGLFDTEVEAARAYDRAAVKCN 299 (459)
Q Consensus 262 KW~ArI~--~~~~g--K~v~LGtFdTeEEAARAYD~AAikl~ 299 (459)
+|..+|. ....| ++++-+-|.|..||-.+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 4677772 22133 67788899999999999998877663
No 18
>PRK10927 essential cell division protein FtsN; Provisional
Probab=29.13 E-value=2.5e+02 Score=29.70 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.4
Q ss_pred eEeeccCCCHHHHHHHHHHHHH
Q 012632 275 YVYLGLFDTEVEAARAYDRAAV 296 (459)
Q Consensus 275 ~v~LGtFdTeEEAARAYD~AAi 296 (459)
+|.||-|.+.++|-++.++..-
T Consensus 285 RVrVGPf~sr~eAe~a~~rLk~ 306 (319)
T PRK10927 285 RVVIGPVKGKENADSTLNRLKM 306 (319)
T ss_pred EEEeCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999877543
No 19
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=25.11 E-value=1.6e+02 Score=30.38 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHhc
Q 012632 182 QVYLGGFDTAHAAARAYDRAAIKFR 206 (459)
Q Consensus 182 ~i~LGtFdTeEEAARAYD~Aaikl~ 206 (459)
..++|.|.+..+|-++-...+..++
T Consensus 140 ~~~~GpF~s~~~a~~~L~~l~~~fr 164 (286)
T PRK10545 140 PNLFGLFANRRAALQALQSIADEQK 164 (286)
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHc
Confidence 4699999999999999988887763
No 20
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=22.88 E-value=2.2e+02 Score=23.56 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=36.5
Q ss_pred CeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHh
Q 012632 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl 205 (459)
.|-||.++-..-+-.+.|+..||-+..|. .++++|..|.+.....+
T Consensus 37 ~fpgl~~r~~~p~~t~~IF~sGki~itGa-ks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 37 RFPGLIYRLRNPKATVLIFSSGKIVITGA-KSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TESSEEEEETTTTEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred cCCeEEEeecCCcEEEEEEcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 57788877777788999999999887775 67888888888766544
No 21
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.47 E-value=8.6e+02 Score=24.25 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=65.6
Q ss_pred CCeEEEEEecCCCeEEEEeecCCeEEEeCCCCC--HHHHHHHHHHHHHHhcCcccCcccccccchhhhhhccccchhhhh
Q 012632 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDT--AHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFV 235 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdT--eEEAARAYD~Aaikl~G~~A~~NFp~sdYeeeLkqmreLSKEE~V 235 (459)
..+..|-.+.+.=+=.|.||..||-+-.|.+.- +.-|||-|-+...++.=..--+||....-...+..--.+-.+++.
T Consensus 55 k~~~aVimrir~P~~ta~I~ssGKi~ctgA~se~~ar~aark~aRilqkLgf~~~f~~fki~nv~asc~vpF~IrLe~~~ 134 (200)
T KOG3302|consen 55 KRFAAVIMRIRSPRTTALIFSSGKIVCTGAKSEDSARLAARKYARILQKLGFPVKFRDFKINNVVASCDVPFPIRLEGLA 134 (200)
T ss_pred ccccEEEEEEcCCceEEEEecCCcEEEeccCCHHHHHHHHHHHHHHHHHcCCCceehheeeEEEEEEEeccceeehhHhh
Confidence 346678777788888899999999988888743 233444444443333222223566544333222211122223332
Q ss_pred hhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeecc
Q 012632 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGL 280 (459)
Q Consensus 236 qaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGt 280 (459)
..-+..+ +-..+.|-|+.++- .-|-+=.| +..|+.+-+|.
T Consensus 135 ~~h~~~s---sYepel~PgliYrm~~pkv~l~I--F~tG~VvvtgA 175 (200)
T KOG3302|consen 135 LRHPVFS---SYEPELFPGLIYRMVKPKVVLLI--FVTGKVVVTGA 175 (200)
T ss_pred hhCCccc---ccCcccCceeEEEecCCcEEEEE--ecCCEEEEEec
Confidence 2222221 22457888988863 34444445 88899888884
No 22
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=20.29 E-value=68 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=17.9
Q ss_pred eeEeeccCCCHHHHHHHHHHHH
Q 012632 274 KYVYLGLFDTEVEAARAYDRAA 295 (459)
Q Consensus 274 K~v~LGtFdTeEEAARAYD~AA 295 (459)
-+|.+|.|++.++|..+..+..
T Consensus 44 yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 44 YRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 3577899999999988877655
Done!