Query 012632
Match_columns 459
No_of_seqs 338 out of 1968
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 7E-20 2.4E-24 144.2 6.9 60 251-310 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 2.4E-19 8.2E-24 141.2 5.7 58 159-217 2-62 (63)
3 3igm_B PF14_0633 protein; AP2 93.4 0.039 1.3E-06 45.1 2.6 29 155-183 3-31 (77)
4 1u3e_M HNH homing endonuclease 83.9 0.1 3.5E-06 47.1 -2.0 88 197-292 55-146 (174)
5 1u3e_M HNH homing endonuclease 75.6 0.12 4.2E-06 46.6 -4.4 38 160-199 109-146 (174)
6 3eik_A Tata-box-binding protei 70.2 40 0.0014 32.1 11.4 133 159-298 76-212 (218)
7 2z8u_A Tata-box-binding protei 69.7 59 0.002 30.1 12.2 133 158-298 45-182 (188)
8 1ais_A TBP, protein (tata-bind 64.4 65 0.0022 29.6 11.2 132 159-298 42-178 (182)
9 1mp9_A Tata-binding protein; t 63.2 84 0.0029 29.3 11.9 133 159-299 46-183 (198)
10 3igm_B PF14_0633 protein; AP2 60.8 4.6 0.00016 33.0 2.4 28 247-276 3-31 (77)
11 1z1b_A Integrase; protein-DNA 46.0 35 0.0012 32.0 6.3 41 162-205 15-55 (356)
12 1x60_A Sporulation-specific N- 41.0 48 0.0016 25.3 5.4 21 182-202 11-31 (79)
13 1z1b_A Integrase; protein-DNA 31.7 64 0.0022 30.2 5.6 42 253-298 14-55 (356)
14 1ytb_A Protein (tata binding p 28.3 3.2E+02 0.011 24.9 9.6 132 159-297 38-173 (180)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.79 E-value=7e-20 Score=144.22 Aligned_cols=60 Identities=38% Similarity=0.592 Sum_probs=55.9
Q ss_pred CCcCceeeecceEEEEecccc-CCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 012632 251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (459)
Q Consensus 251 kYRGV~~~k~GKW~ArI~~~~-~gK~v~LGtFdTeEEAARAYD~AAikl~G~~A~tNFp~s 310 (459)
+|+||+++++|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..|.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999988999999997655 479999999999999999999999999999999999975
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.77 E-value=2.4e-19 Score=141.19 Aligned_cols=58 Identities=48% Similarity=0.823 Sum_probs=53.9
Q ss_pred CeEEEEEecCCCeEEEEeecC---CeEEEeCCCCCHHHHHHHHHHHHHHhcCcccCcccccc
Q 012632 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE 217 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~---gK~i~LGtFdTeEEAARAYD~Aaikl~G~~A~~NFp~s 217 (459)
+||||++ +++|||+|+|+++ |+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999997 4689999999984 78999999999999999999999999999999999864
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.44 E-value=0.039 Score=45.08 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.4
Q ss_pred CCCCCeEEEEEecCCCeEEEEeecCCeEE
Q 012632 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV 183 (459)
Q Consensus 155 ~rtSgYRGV~~~r~~GKW~A~I~~~gK~i 183 (459)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46799999999999999999999988753
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=83.91 E-value=0.1 Score=47.09 Aligned_cols=88 Identities=9% Similarity=-0.032 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCccc---Ccccccc-cchhhhhhccccchhhhhhhhccccCCCCCCCCCCcCceeeecceEEEEeccccC
Q 012632 197 AYDRAAIKFRGAEA---DINFSIE-DYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 272 (459)
Q Consensus 197 AYD~Aaikl~G~~A---~~NFp~s-dYeeeLkqmreLSKEE~VqaLRRqS~g~~r~sSkYRGV~~~k~GKW~ArI~~~~~ 272 (459)
++...+..|.|... ..++-.. -....+..|..+|..|.......... . ..++||.+.+.++|.+.| ...
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeeeccCCCCceEE--EEc
Confidence 56665666666432 1233211 12346777888888888766554431 1 124577653356788888 344
Q ss_pred CeeEeeccCCCHHHHHHHHH
Q 012632 273 KKYVYLGLFDTEVEAARAYD 292 (459)
Q Consensus 273 gK~v~LGtFdTeEEAARAYD 292 (459)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 5667999999999999964
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=75.60 E-value=0.12 Score=46.59 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=31.7
Q ss_pred eEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHH
Q 012632 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYD 199 (459)
Q Consensus 160 YRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD 199 (459)
++||.+ +..++|.+.|... +.++||.|.|.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 467876 6667899999888 7788999999999999874
No 6
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=70.23 E-value=40 Score=32.12 Aligned_cols=133 Identities=15% Similarity=0.167 Sum_probs=82.9
Q ss_pred CeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcCcccCccc---ccccchhhhhhccccchhhhh
Q 012632 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF---SIEDYEDDLKQMSNLTKEEFV 235 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G~~A~~NF---p~sdYeeeLkqmreLSKEE~V 235 (459)
+|-||.++-+.-+=.+-|+..||-+..|. .++++|..|.++.+..+....-...| ...........--.+..+.+.
T Consensus 76 ~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la 154 (218)
T 3eik_A 76 RFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLA 154 (218)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred cCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHH
Confidence 46688877788888999999999988886 56889999988887766532222222 211111111101112223333
Q ss_pred hhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 012632 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (459)
Q Consensus 236 qaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl 298 (459)
...+.... =....|-|+..+- .-+=..-| +..||-+..|. .+++|+..|++...-.|
T Consensus 155 ~~~~~~~~---YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 155 YAHSNYCS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHSTTTEE---CCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HhccCCcE---ECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22222211 1234678887763 45667777 88899998886 77999999998866544
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=69.74 E-value=59 Score=30.08 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=76.9
Q ss_pred CCeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhc--Ccc-c-Ccccccccchhhhhhccccchhh
Q 012632 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (459)
Q Consensus 158 SgYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~--G~~-A-~~NFp~sdYeeeLkqmreLSKEE 233 (459)
.+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+. |-. . ..+|.+..-.....--..+..+.
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 123 (188)
T ss_dssp ----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHH
T ss_pred CCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHH
Confidence 3577888777778889999999998888864 55677777777655443 221 1 12332211111100001122222
Q ss_pred hhhhhccccCCCCCCCCCCcCceee-ecceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 012632 234 FVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (459)
Q Consensus 234 ~VqaLRRqS~g~~r~sSkYRGV~~~-k~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl 298 (459)
+...++. . .=...+|-|+..+ ..-|-.+-| +..||-+..|. .+++|+..|+++....+
T Consensus 124 la~~~~~-~---eYePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 124 IALMVEG-T---EYEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHSTT-E---EECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHhhCcC-c---EECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3222211 1 1123578898876 355677777 88999998885 56788999988866554
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=64.35 E-value=65 Score=29.57 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=78.9
Q ss_pred CeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--cc-c-Ccccccccchhhhhhccccchhhh
Q 012632 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEEF 234 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G--~~-A-~~NFp~sdYeeeLkqmreLSKEE~ 234 (459)
+|-||.++-+.-+=.+.|+..||-+--|. .++++|..|....+..+.. -. . ..+|.+..-.....--..+..+.+
T Consensus 42 ~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~l 120 (182)
T 1ais_A 42 EFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVV 120 (182)
T ss_dssp TCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHH
T ss_pred ccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHH
Confidence 46678766666677899999998776664 6778888888876655533 21 1 133332211111000011222222
Q ss_pred hhhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 012632 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (459)
Q Consensus 235 VqaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl 298 (459)
...++ .. .=...+|-|+..+- .-+=.+-| +..||-+..|. .+++++..|+++....+
T Consensus 121 a~~~~-~~---~YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 121 ALTLP-NC---EYEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHST-TE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HhhCC-CC---EECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22221 11 11235788988763 45667777 78899998885 56789999998877655
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=63.18 E-value=84 Score=29.28 Aligned_cols=133 Identities=18% Similarity=0.212 Sum_probs=80.0
Q ss_pred CeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--cc-c-Ccccccccchhhhhhccccchhhh
Q 012632 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEEF 234 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~G--~~-A-~~NFp~sdYeeeLkqmreLSKEE~ 234 (459)
+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+.. -. . ..+|....-.....--..+..+.+
T Consensus 46 ~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~l 124 (198)
T 1mp9_A 46 QFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKA 124 (198)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHH
T ss_pred cccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHH
Confidence 466888777777889999999998888875 556777777776655533 21 1 123322111111000111222223
Q ss_pred hhhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 012632 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN 299 (459)
Q Consensus 235 VqaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl~ 299 (459)
...++ .. .=...+|-|+..+- .-|-.+-| +..||-+..|. .+++++..|+++....+.
T Consensus 125 a~~~~-~~---~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 125 AFLLE-NN---MYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp HHHSS-SE---ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HhhcC-Cc---EECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 22221 11 11235788988763 45677777 88999998985 467789999988776663
No 10
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=60.84 E-value=4.6 Score=33.00 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCCCCCcCceeee-cceEEEEeccccCCeeE
Q 012632 247 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYV 276 (459)
Q Consensus 247 r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v 276 (459)
..+|+|.||+|.+ .+.|.|.- ..++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W--~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFF--YDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEE--EETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEE--ecCCeEe
Confidence 3578999999987 68999997 3455544
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=46.01 E-value=35 Score=31.99 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.6
Q ss_pred EEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHh
Q 012632 162 GVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (459)
Q Consensus 162 GV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl 205 (459)
||+ .+..|.|.......||++.+|. |..+|-.+...+...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 4677899988888899999996 8888776666554443
No 12
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=40.95 E-value=48 Score=25.30 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHH
Q 012632 182 QVYLGGFDTAHAAARAYDRAA 202 (459)
Q Consensus 182 ~i~LGtFdTeEEAARAYD~Aa 202 (459)
.|.+|.|.+.+.|.+...+..
T Consensus 11 ~vQvGaf~~~~~A~~~~~~L~ 31 (79)
T 1x60_A 11 KVQIGAFKVKANADSLASNAE 31 (79)
T ss_dssp EEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHH
Confidence 578899999999988776654
No 13
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=31.70 E-value=64 Score=30.15 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=30.6
Q ss_pred cCceeeecceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 012632 253 RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (459)
Q Consensus 253 RGV~~~k~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAikl 298 (459)
.||..++.|.|..+. ...||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 467777788999887 45678899996 8888877666554444
No 14
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=28.31 E-value=3.2e+02 Score=24.91 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=75.8
Q ss_pred CeEEEEEecCCCeEEEEeecCCeEEEeCCCCCHHHHHHHHHHHHHHhc--Cccc-Ccccccccchhhhhhccccchhhhh
Q 012632 159 QYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFR--GAEA-DINFSIEDYEDDLKQMSNLTKEEFV 235 (459)
Q Consensus 159 gYRGV~~~r~~GKW~A~I~~~gK~i~LGtFdTeEEAARAYD~Aaikl~--G~~A-~~NFp~sdYeeeLkqmreLSKEE~V 235 (459)
.|-||.++-+.-+=.+-|+..||-+--|. .++++|..|.+..+..+. |... ..||...........-..+..+.+.
T Consensus 38 ~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la 116 (180)
T 1ytb_A 38 RFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLA 116 (180)
T ss_dssp TCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHH
T ss_pred ccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHHH
Confidence 46688877777888999999999888776 456778887777655543 3211 1334321111111001112222232
Q ss_pred hhhccccCCCCCCCCCCcCceeee-cceEEEEeccccCCeeEeeccCCCHHHHHHHHHHHHHH
Q 012632 236 HVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297 (459)
Q Consensus 236 qaLRRqS~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~gK~v~LGtFdTeEEAARAYD~AAik 297 (459)
....... .=....|-|+..+- ..|=..-| +..||-+..|. .+++|+..|++.-.-.
T Consensus 117 ~~~~~~~---~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~ 173 (180)
T 1ytb_A 117 FSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPV 173 (180)
T ss_dssp HHTTTTE---ECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred Hhcccce---EECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 2222211 11235677887663 33445555 78899888885 5677888888875543
Done!