BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012634
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 367 MDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFS 421
+ SS ++E L +Y +K+DS ++ + + + VPCG+ QF + F
Sbjct: 102 LSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFG 156
>pdb|4DIX|A Chain A, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
Protein Scab1
pdb|4DIX|B Chain B, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
Protein Scab1
Length = 230
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 278 CMFQWVRHLQDGT-RHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFAND 336
C QW R DG+ + I GAT Y DV +++ + I D V
Sbjct: 42 CTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADII-YDGHSLSLSTV------ 94
Query: 337 QNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATL-ILRRSIYRIKIDSTEAI 395
KI G+ S ++A + + F+V++ S E+ ++ + RIK+ + +
Sbjct: 95 -GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTV 153
Query: 396 IEERF 400
I + +
Sbjct: 154 IAKEY 158
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 327 GELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYR 386
G+ + R + DQN +K D G DAYI G N EQA + LR++
Sbjct: 27 GQQMGRTSGDQNPLKTDKGRDEARDAYIQLGLGYL-------QRGNTEQAKVPLRKA--- 76
Query: 387 IKIDSTEA 394
++ID + A
Sbjct: 77 LEIDPSSA 84
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 2 QKEEIHSLRQQIAV-------ACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALN 54
QK E+H L +Q+ + A L EL + R + + +DE+ EA+ L+
Sbjct: 323 QKYEMHELLRQMGIRRIFSPFADLSELSATGRNLQVSRVLQRTVIEVDERGTEAVAGILS 382
Query: 55 ELARR 59
E+ R
Sbjct: 383 EITAR 387
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 367 MDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFS 421
+ SS ++E L + +Y + ID + + + + + VPCG+ QF + F
Sbjct: 104 LSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFG 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,838,353
Number of Sequences: 62578
Number of extensions: 507420
Number of successful extensions: 1231
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 14
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)