Query 012634
Match_columns 459
No_of_seqs 49 out of 51
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14988 DUF4515: Domain of un 73.1 12 0.00026 36.3 7.0 74 2-75 83-174 (206)
2 PLN03144 Carbon catabolite rep 72.8 3.1 6.8E-05 46.3 3.3 32 293-324 174-205 (606)
3 PRK11637 AmiB activator; Provi 71.4 67 0.0015 33.6 12.4 69 4-72 54-135 (428)
4 COG1704 LemA Uncharacterized c 61.4 18 0.0004 35.2 5.6 47 74-132 91-138 (185)
5 PRK09039 hypothetical protein; 60.4 55 0.0012 33.9 9.1 119 2-132 51-171 (343)
6 PF03961 DUF342: Protein of un 59.9 15 0.00033 38.7 5.2 84 242-365 117-200 (451)
7 PF10186 Atg14: UV radiation r 57.9 1.1E+02 0.0025 29.2 10.3 84 4-88 34-125 (302)
8 TIGR01005 eps_transp_fam exopo 54.4 1.1E+02 0.0024 34.1 10.9 109 3-111 200-329 (754)
9 PRK14153 heat shock protein Gr 51.4 1.7E+02 0.0037 28.6 10.3 113 26-152 34-150 (194)
10 COG2900 SlyX Uncharacterized p 48.7 37 0.00081 28.7 4.7 37 27-66 3-41 (72)
11 PF15294 Leu_zip: Leucine zipp 48.5 1.6E+02 0.0034 30.5 10.1 36 4-39 139-174 (278)
12 PRK09239 chorismate mutase; Pr 48.1 1.9E+02 0.0042 25.3 9.9 94 29-132 7-100 (104)
13 KOG0977 Nuclear envelope prote 47.8 1.1E+02 0.0023 34.4 9.3 40 3-42 41-80 (546)
14 CHL00140 rpl6 ribosomal protei 44.4 35 0.00076 32.3 4.5 53 370-423 80-138 (178)
15 PF12128 DUF3584: Protein of u 44.3 3.4E+02 0.0074 32.7 13.3 82 22-104 813-894 (1201)
16 PRK14148 heat shock protein Gr 41.2 3.1E+02 0.0067 26.8 10.4 113 25-151 40-156 (195)
17 PRK14154 heat shock protein Gr 39.6 3.3E+02 0.0071 27.0 10.4 66 80-152 101-171 (208)
18 COG1579 Zn-ribbon protein, pos 39.5 1.9E+02 0.0042 29.2 8.9 92 3-103 37-129 (239)
19 PF11464 Rbsn: Rabenosyn Rab b 39.3 70 0.0015 24.5 4.5 40 4-45 3-42 (42)
20 PRK14140 heat shock protein Gr 39.2 3.8E+02 0.0082 26.2 10.7 65 80-152 86-154 (191)
21 PRK14160 heat shock protein Gr 37.7 3E+02 0.0065 27.3 9.8 63 80-152 110-174 (211)
22 PRK02793 phi X174 lysis protei 36.9 80 0.0017 26.0 4.9 33 29-64 5-39 (72)
23 PRK14162 heat shock protein Gr 36.5 4E+02 0.0087 26.1 10.3 64 81-152 89-156 (194)
24 PRK02119 hypothetical protein; 36.3 81 0.0018 26.1 4.9 37 25-64 2-40 (73)
25 TIGR03185 DNA_S_dndD DNA sulfu 35.6 1.5E+02 0.0033 32.9 8.3 48 3-50 404-453 (650)
26 TIGR03185 DNA_S_dndD DNA sulfu 34.9 1.3E+02 0.0029 33.3 7.7 58 340-400 585-649 (650)
27 PF04156 IncA: IncA protein; 33.5 2.4E+02 0.0052 25.9 8.1 101 26-130 82-183 (191)
28 TIGR01795 CM_mono_cladeE monof 32.9 3.2E+02 0.0069 23.5 8.4 84 32-128 3-89 (94)
29 PRK11020 hypothetical protein; 32.9 68 0.0015 29.5 4.2 45 3-50 4-60 (118)
30 PRK14139 heat shock protein Gr 32.5 3.7E+02 0.008 26.1 9.3 64 81-152 82-147 (185)
31 PRK12595 bifunctional 3-deoxy- 32.0 1.7E+02 0.0037 30.7 7.6 53 1-53 1-58 (360)
32 PRK00295 hypothetical protein; 31.7 1.1E+02 0.0024 25.0 4.9 31 30-63 3-35 (68)
33 PF01025 GrpE: GrpE; InterPro 29.9 2.2E+02 0.0047 25.7 7.0 53 78-132 58-114 (165)
34 TIGR01801 CM_A chorismate muta 29.5 1.7E+02 0.0036 25.6 5.9 86 1-86 1-98 (102)
35 PRK09293 fructose-1,6-bisphosp 29.2 77 0.0017 32.9 4.5 77 260-355 145-222 (327)
36 PRK14146 heat shock protein Gr 29.0 5.8E+02 0.013 25.3 10.4 64 81-152 104-171 (215)
37 PRK04406 hypothetical protein; 28.9 1.3E+02 0.0029 25.1 5.0 32 29-63 8-41 (75)
38 PLN02542 fructose-1,6-bisphosp 28.6 85 0.0018 34.0 4.8 80 260-357 234-314 (412)
39 cd01253 PH_beta_spectrin Beta- 28.4 2.5E+02 0.0055 23.1 6.7 75 370-444 20-102 (104)
40 cd01246 PH_oxysterol_bp Oxyste 28.3 2.9E+02 0.0062 21.5 8.3 77 368-444 10-89 (91)
41 PRK05498 rplF 50S ribosomal pr 28.2 1E+02 0.0022 29.1 4.8 53 370-423 80-138 (178)
42 PRK11281 hypothetical protein; 28.1 3E+02 0.0065 33.4 9.5 91 29-121 357-487 (1113)
43 PRK06342 transcription elongat 28.1 78 0.0017 29.7 3.9 14 3-16 40-53 (160)
44 PF04849 HAP1_N: HAP1 N-termin 27.8 1.3E+02 0.0028 31.6 5.7 46 2-47 232-277 (306)
45 PRK10361 DNA recombination pro 27.7 5.2E+02 0.011 28.7 10.5 26 21-46 77-102 (475)
46 COG4942 Membrane-bound metallo 27.3 8.7E+02 0.019 26.7 12.8 94 5-99 39-132 (420)
47 KOG3083 Prohibitin [Posttransl 27.2 58 0.0013 33.3 3.1 41 44-84 141-199 (271)
48 PRK14147 heat shock protein Gr 27.2 5.1E+02 0.011 24.7 9.2 64 81-152 68-133 (172)
49 PF15070 GOLGA2L5: Putative go 26.9 2.7E+02 0.0058 31.6 8.4 75 4-78 87-195 (617)
50 COG1579 Zn-ribbon protein, pos 26.6 3.3E+02 0.0072 27.6 8.2 42 2-43 64-114 (239)
51 PRK14149 heat shock protein Gr 26.5 3.9E+02 0.0085 26.1 8.4 64 80-152 85-152 (191)
52 PRK14151 heat shock protein Gr 26.4 5.8E+02 0.013 24.4 9.7 64 81-152 70-138 (176)
53 PF00038 Filament: Intermediat 25.6 1.6E+02 0.0034 29.1 5.7 46 3-48 215-260 (312)
54 COG1196 Smc Chromosome segrega 25.6 4.7E+02 0.01 31.4 10.4 57 3-59 375-431 (1163)
55 cd05829 Sortase_E Sortase E (S 25.0 1.9E+02 0.0041 26.2 5.7 51 257-307 42-96 (144)
56 KOG0978 E3 ubiquitin ligase in 24.6 2.7E+02 0.0059 32.2 8.0 108 22-132 500-621 (698)
57 TIGR03654 L6_bact ribosomal pr 24.6 1.3E+02 0.0028 28.5 4.7 53 370-423 79-137 (175)
58 PRK04325 hypothetical protein; 24.2 1.8E+02 0.0038 24.2 4.9 32 30-64 7-40 (74)
59 PRK14143 heat shock protein Gr 24.1 7.2E+02 0.016 25.0 10.0 64 80-151 116-184 (238)
60 PRK14141 heat shock protein Gr 24.0 7.2E+02 0.016 24.7 9.8 64 80-151 80-153 (209)
61 PF04012 PspA_IM30: PspA/IM30 23.8 3.7E+02 0.008 25.4 7.7 34 99-132 106-139 (221)
62 PF11629 Mst1_SARAH: C termina 23.5 2.6E+02 0.0056 22.3 5.4 23 29-51 23-45 (49)
63 TIGR02169 SMC_prok_A chromosom 23.5 6E+02 0.013 29.2 10.4 17 340-356 606-622 (1164)
64 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 23.5 69 0.0015 30.5 2.7 119 319-443 46-195 (195)
65 PF13600 DUF4140: N-terminal d 23.2 1.2E+02 0.0026 25.5 3.9 35 3-37 69-103 (104)
66 TIGR01076 sortase_fam LPXTG-si 22.8 82 0.0018 28.0 2.9 43 263-306 42-85 (136)
67 TIGR00547 lolA periplasmic cha 22.2 1.3E+02 0.0028 29.0 4.3 86 341-432 90-178 (204)
68 PLN02939 transferase, transfer 22.1 5.3E+02 0.011 31.2 9.8 77 15-94 152-280 (977)
69 cd00354 FBPase Fructose-1,6-bi 22.0 1.2E+02 0.0026 31.4 4.3 79 260-356 138-217 (315)
70 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.6 5.3E+02 0.012 23.0 7.8 66 4-69 59-124 (132)
71 PF04508 Pox_A_type_inc: Viral 21.6 1.1E+02 0.0024 21.0 2.6 12 4-15 1-12 (23)
72 PLN02262 fructose-1,6-bisphosp 21.5 1.2E+02 0.0026 31.9 4.2 77 261-355 158-235 (340)
73 cd05163 TRRAP TRansformation/t 21.5 1.2E+02 0.0025 30.2 3.9 55 398-452 2-61 (253)
74 PF08838 DUF1811: Protein of u 21.1 1.1E+02 0.0024 27.5 3.3 31 3-35 13-43 (102)
75 PF11932 DUF3450: Protein of u 21.1 4.8E+02 0.01 25.5 8.0 85 8-93 39-127 (251)
76 TIGR01000 bacteriocin_acc bact 20.9 3.1E+02 0.0068 29.0 7.2 27 4-30 97-123 (457)
77 PRK14164 heat shock protein Gr 20.7 6.4E+02 0.014 25.2 8.8 62 80-152 119-181 (218)
78 PRK14150 heat shock protein Gr 20.0 8.1E+02 0.017 23.8 10.1 121 19-152 28-156 (193)
79 PF04102 SlyX: SlyX; InterPro 20.0 2.5E+02 0.0054 22.8 4.9 32 30-64 2-35 (69)
No 1
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=73.09 E-value=12 Score=36.29 Aligned_cols=74 Identities=27% Similarity=0.340 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHH----hh----hhhhhhcchhhhHHHHhHHHHHH---------hHHhhHHHHHHHHHHH-HhhhhH
Q 012634 2 QKEEIHSLRQQIAVA----CL----KELQLQNEKYTLERKVSELRMAI---------DEKQNEAITSALNELA-RRKGVL 63 (459)
Q Consensus 2 ~eeei~~LRk~Lada----s~----KE~QilnEKyvLErRiA~mRmAf---------DqqQqdlVdAASKaLS-yRqdii 63 (459)
||.||..|++.++.. +. =+.|.+.||.-||+-..+++++- .++=|-|.-||-++|. +=++|-
T Consensus 83 qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~ 162 (206)
T PF14988_consen 83 QEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIK 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999998888752 22 25789999999999887777651 2223334444444443 568899
Q ss_pred hhhhhhhhhhhh
Q 012634 64 EENLKLAHDLKV 75 (459)
Q Consensus 64 EENiRLtyalq~ 75 (459)
.||.+|.-+|.-
T Consensus 163 ~EN~~L~k~L~~ 174 (206)
T PF14988_consen 163 RENQQLRKELLQ 174 (206)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 2
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=72.77 E-value=3.1 Score=46.27 Aligned_cols=32 Identities=34% Similarity=0.632 Sum_probs=27.8
Q ss_pred eecCCCCCceeeeccccCceEEEEEEecCCCC
Q 012634 293 YIEGATNPEYVVTADDVDKLIAVECIPMDDQG 324 (459)
Q Consensus 293 ~IegA~~p~Y~vTADDvd~~iAvec~PmDd~~ 324 (459)
.|+=..+..|+.|+||||-.|-+||+|+|...
T Consensus 174 w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~ 205 (606)
T PLN03144 174 WIEVGRSKTYTPTADDVGHVLKFECVVVDAET 205 (606)
T ss_pred eEEeCCCccccCChhhCCceEEEEEEEccccc
Confidence 45655788999999999999999999998764
No 3
>PRK11637 AmiB activator; Provisional
Probab=71.41 E-value=67 Score=33.61 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHH-------------HHHHHHHHHHhhhhHhhhhhhh
Q 012634 4 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKGVLEENLKLA 70 (459)
Q Consensus 4 eei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdl-------------VdAASKaLSyRqdiiEENiRLt 70 (459)
.+|..+.+.|.+..-+..++.++...|+++|+.+.-.++..|+++ |+.+-+.|..+++.+.+=+|-.
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555565555666677777777777777766666655544 2333445555566666666666
Q ss_pred hh
Q 012634 71 HD 72 (459)
Q Consensus 71 ya 72 (459)
|.
T Consensus 134 Y~ 135 (428)
T PRK11637 134 FR 135 (428)
T ss_pred HH
Confidence 65
No 4
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=61.38 E-value=18 Score=35.18 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=40.0
Q ss_pred hhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 012634 74 KVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 132 (459)
Q Consensus 74 q~aeQERs~FvSsLLpLLaEY-~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~ 132 (459)
+.||.|.+-+.+.|+=+-.-| +|.-. ..|..||++|..||.++.-+.
T Consensus 91 ~~aq~~Ls~~L~rl~a~~E~YPdLKAn------------~~f~~Lq~ql~~tEn~Ia~aR 138 (185)
T COG1704 91 QEAQAELSSALGRLFAVAEAYPDLKAN------------ENFLELQSQLEGTENRIAVAR 138 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhh------------hHHHHHHHHHHhHHHHHHHHH
Confidence 778899999999999888889 77643 469999999999999987666
No 5
>PRK09039 hypothetical protein; Validated
Probab=60.36 E-value=55 Score=33.92 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhh-hhhhhhhh
Q 012634 2 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHD-LKVAEDER 80 (459)
Q Consensus 2 ~eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtya-lq~aeQER 80 (459)
+++|+..|..+|++.+.--.==.+..-.|+.+|+.||--|+.-+ -+.+-+|.-+--.++ ...++..-
T Consensus 51 ~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~------------~~r~~Le~~~~~~~~~~~~~~~~~ 118 (343)
T PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAE------------AERSRLQALLAELAGAGAAAEGRA 118 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhhhcchHHHHH
Confidence 46788888888888442222223445567777777777666111 111222221110111 00011111
Q ss_pred HHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 012634 81 YFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 132 (459)
Q Consensus 81 s~FvSsLLpLLaEY-~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~ 132 (459)
...-.-|=-+.++| .-+|.|.-.++=+..+|.=-..|+..|...+.+.++.+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123444555667 47777777777777777777777777776666665555
No 6
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.91 E-value=15 Score=38.70 Aligned_cols=84 Identities=24% Similarity=0.275 Sum_probs=52.0
Q ss_pred ccCCCCCCcccceeecccCCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecC
Q 012634 242 SISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMD 321 (459)
Q Consensus 242 a~~dplp~i~gl~I~Gda~pG~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA~~p~Y~vTADDvd~~iAvec~PmD 321 (459)
.--.|.||.+|..+.|+.+|...-.-.-+. .++.-.+..+|=.+++|
T Consensus 117 ~~~p~~~G~~G~~V~G~~I~~~~~~~~~~~--------------------------~g~~~~~~~~d~~~~~A------- 163 (451)
T PF03961_consen 117 EKIPPTPGEPGRDVFGEPIPAKPGKDIPLK--------------------------AGKNTEVSEEDGNKLYA------- 163 (451)
T ss_pred EEccCCCCCCCcccCCCCcCCCCCCcccee--------------------------CCCCEEEEcCCCCEEEE-------
Confidence 444578999999999999987654322111 12333344444444443
Q ss_pred CCCCccceeeeecccCCccccCccchHHHHHHhHhcceEEEEEe
Q 012634 322 DQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLM 365 (459)
Q Consensus 322 d~~rkGelVk~~aNd~~kI~cDpemq~~I~~~l~~G~A~f~V~l 365 (459)
...|-++. +++.|..+|.+.=. +--+++|+..|.=.+
T Consensus 164 --~~~G~~~~----~~~~i~V~~~l~i~-dVd~~TGnI~f~G~V 200 (451)
T PF03961_consen 164 --AIDGRPVF----ENGKISVDPVLEIN-DVDYSTGNIDFDGDV 200 (451)
T ss_pred --ecCCEEEE----ECCEEEEEEeeEeC-CCCCCCCCEeeeEEE
Confidence 23444554 45567788877777 777888999986433
No 7
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.91 E-value=1.1e+02 Score=29.21 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhh--------hhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Q 012634 4 EEIHSLRQQIAVACL--------KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKV 75 (459)
Q Consensus 4 eei~~LRk~Ladas~--------KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~ 75 (459)
++...|+.++.++-- .=.++..|...++.|++.+|....++++.+-+.=-+--..|+.+-...-.|. +.+.
T Consensus 34 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~ 112 (302)
T PF10186_consen 34 EENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQD 112 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344566666666433 3345566777788888888888887776654443333333444433344444 4444
Q ss_pred hhhhhHHHHHHHH
Q 012634 76 AEDERYFFMSSML 88 (459)
Q Consensus 76 aeQERs~FvSsLL 88 (459)
..+++..++..+.
T Consensus 113 ~~~~~~~~~~~~~ 125 (302)
T PF10186_consen 113 LVESRQEQLEELQ 125 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 8
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.44 E-value=1.1e+02 Score=34.13 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcc--------hhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh--h-----
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNE--------KYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN--L----- 67 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnE--------KyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEEN--i----- 67 (459)
++++..||++|.++-.+=.+...+ .-+.+.+++++.-..-.-|.++++|.++.-+.|..+-.-+ .
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~ 279 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEV 279 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhh
Confidence 456777888877765443333222 1134588888887777777777776666555443332111 0
Q ss_pred -----hhhhhhhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHH
Q 012634 68 -----KLAHDLKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVK 111 (459)
Q Consensus 68 -----RLtyalq~aeQERs~FvSsLLpLLaEY-~LqP~V~dAqSIvsnvK 111 (459)
.+.=.++...++....-+-+--|...| .-+|.|.+++.=...+|
T Consensus 280 ~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~ 329 (754)
T TIGR01005 280 LSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLD 329 (754)
T ss_pred hcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 000112222333333344444566778 77888877544444443
No 9
>PRK14153 heat shock protein GrpE; Provisional
Probab=51.43 E-value=1.7e+02 Score=28.63 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=62.6
Q ss_pred chhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhc--CCC--CCcc
Q 012634 26 EKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADY--GLW--PHVT 101 (459)
Q Consensus 26 EKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~FvSsLLpLLaEY--~Lq--P~V~ 101 (459)
|+-.++..|+.++--.++....+.-+..--=.||+..-.|-- ++-..-...|+..|||.+-.+ -|. +.-.
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e------~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~ 107 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREME------ENRKFVLEQVLLDLLEVTDNFERALESARTAE 107 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHhHHHHHHhcccccc
Confidence 334444444444433333333333333333345554443311 112223457899999999887 232 2234
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 102 NASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 102 dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
+..+|+.+|+..+++|..-|. ...|+++. ..| ..|+|+.|+..
T Consensus 108 ~~~~l~~Gvemi~k~~~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEAv 150 (194)
T PRK14153 108 DMNSIVEGIEMVSKQFFSILE--KYGLERIE-CEG-----EEFDPHRHEAM 150 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HCCCeeeC-CCC-----CCCChhHhcee
Confidence 568899999999999998885 55556555 113 24667666543
No 10
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.71 E-value=37 Score=28.75 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=29.5
Q ss_pred hhhhHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 012634 27 KYTLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEEN 66 (459)
Q Consensus 27 KyvLErRiA~--mRmAfDqqQqdlVdAASKaLSyRqdiiEEN 66 (459)
...||+||.+ +|+|| |.+.|+.-|-+|..-|-+|+.+
T Consensus 3 ~~~lE~Ri~eLE~r~Af---QE~tieeLn~~laEq~~~i~k~ 41 (72)
T COG2900 3 DMELEARIIELEIRLAF---QEQTIEELNDALAEQQLVIDKL 41 (72)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999986 58898 7778999898888888777754
No 11
>PF15294 Leu_zip: Leucine zipper
Probab=48.54 E-value=1.6e+02 Score=30.48 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHH
Q 012634 4 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRM 39 (459)
Q Consensus 4 eei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRm 39 (459)
+|...||.||...--.=...+.||..|++.+.+||.
T Consensus 139 ~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 139 EENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999998888878889999999999999998
No 12
>PRK09239 chorismate mutase; Provisional
Probab=48.13 E-value=1.9e+02 Score=25.34 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=61.3
Q ss_pred hhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhh
Q 012634 29 TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISN 108 (459)
Q Consensus 29 vLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~FvSsLLpLLaEY~LqP~V~dAqSIvs 108 (459)
-+...+.++|-.+|+-=..||+.-+|-+++=+.|.+-...-...+-..++|... +..+--+.++++|.|.+
T Consensus 7 ~~~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~~~~i~dp~RE~~v-l~~~~~~a~~~gl~p~~-------- 77 (104)
T PRK09239 7 RAPAELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEHGLPPADPAREAYQ-IERLRQLAKDANLDPDF-------- 77 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHCCCCHHH--------
Confidence 455668888988888777777665555444444444333322223334444443 35567777889999974
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccc
Q 012634 109 TVKHLYDQLQSQIRTSYDRIRDLT 132 (459)
Q Consensus 109 nvKvL~~~Lq~kl~~~e~klke~~ 132 (459)
++.+|+.+-+.....++++...+
T Consensus 78 -~~~i~~~ii~esir~q~~i~~~~ 100 (104)
T PRK09239 78 -AEKFLNFIIKEVIRHHERIAAEH 100 (104)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999888888888776655
No 13
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.77 E-value=1.1e+02 Score=34.42 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHh
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 42 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfD 42 (459)
++||..|=.|||+|.=|=-+|=.|...||-.|-.+|-.|-
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~ 80 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG 80 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6899999999999999999999999999999998887764
No 14
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=44.45 E-value=35 Score=32.30 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=40.2
Q ss_pred ccccceeEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 012634 370 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 423 (459)
Q Consensus 370 ~d~wE~atL~irR~~Y~IK~~~~~~~I~Ekfs~~~~IkIp~G------~~~qfvi~~sdG 423 (459)
.+.|+ ..|-|.=-||.+...++.+.|.==||-...+.||.| .+++.+|.+.|-
T Consensus 80 t~Gf~-~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dk 138 (178)
T CHL00140 80 SEGFE-KKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDK 138 (178)
T ss_pred ccCce-EEEEEEEEEEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 46666 778888888999998777888777888899999977 345566666654
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.33 E-value=3.4e+02 Score=32.70 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=57.3
Q ss_pred hhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcc
Q 012634 22 QLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVT 101 (459)
Q Consensus 22 QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~FvSsLLpLLaEY~LqP~V~ 101 (459)
.++.+|-.|+.+++.++-++.+.++++-.. .+++..+..=+|+.+.-.-+.+..-++.-.-+..++.-|+++.+-|+..
T Consensus 813 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 891 (1201)
T PF12128_consen 813 ELREEKPELEEQLRDLEQELQELEQELNQL-QKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAE 891 (1201)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCch
Confidence 456678888888888888888877776543 4455556666666666555555555555555666666678888888888
Q ss_pred cch
Q 012634 102 NAS 104 (459)
Q Consensus 102 dAq 104 (459)
+|+
T Consensus 892 ~~~ 894 (1201)
T PF12128_consen 892 DAE 894 (1201)
T ss_pred hhh
Confidence 888
No 16
>PRK14148 heat shock protein GrpE; Provisional
Probab=41.16 E-value=3.1e+02 Score=26.84 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=62.6
Q ss_pred cchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhc----CCCCCc
Q 012634 25 NEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADY----GLWPHV 100 (459)
Q Consensus 25 nEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~FvSsLLpLLaEY----~LqP~V 100 (459)
+|.-.|+.+++.++=..++....+.-+..-.=.||+..-.|-- ++-..-..-|+..|||.+--+ +.-+.-
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e------~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~ 113 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVS------NARKFGIEKFAKELLPVIDSIEQALKHEVKL 113 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHhHHHHHHhccccc
Confidence 3334444555555444444444444333333344443332211 111122346899999999877 223433
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 012634 101 TNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 151 (459)
Q Consensus 101 ~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~ 151 (459)
.++.+|+.+|+..+++|..=|. ..-|+++. +.| ..|+|+.|+-
T Consensus 114 ~~~~~l~~Gv~mi~k~l~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEA 156 (195)
T PRK14148 114 EEAIAMKEGIELTAKMLVDILK--KNGVEELD-PKG-----EKFDPNLHEA 156 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhe
Confidence 4567899999999999988885 44555554 112 2367777754
No 17
>PRK14154 heat shock protein GrpE; Provisional
Probab=39.58 E-value=3.3e+02 Score=27.03 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhhhc--CCC--C-CcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 80 RYFFMSSMLGLLADY--GLW--P-HVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 80 Rs~FvSsLLpLLaEY--~Lq--P-~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
..-|+..|||.+-.+ -|. + .-.+..+|+..|+..+++|..-|. ..-|+++.-.+| ..|+|+.|+-.
T Consensus 101 ~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~--k~GVe~I~~~~G-----~~FDP~~HEAv 171 (208)
T PRK14154 101 SKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLA--KHGVQVINPNPG-----DPFDPALHEAM 171 (208)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEecCCCC-----CCCChhHhhee
Confidence 456899999998877 232 2 223468899999999999988885 555666552233 24667666543
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=39.50 E-value=1.9e+02 Score=29.21 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHH
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYF 82 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~ 82 (459)
+.|+..+++.+.+.=+.=--|-+++.-||-.|..+|=-.+--+..+ ++++++=-|+. |+.+++.|++.+-.
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~a--------L~~E~~~ak~r~~~ 107 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRA--------LNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHH--------HHHHHHHHHHHHHH
Confidence 4566666666666655555566777777777777765444444444 66665544443 77788888888888
Q ss_pred HHHHHHHHhhhc-CCCCCcccc
Q 012634 83 FMSSMLGLLADY-GLWPHVTNA 103 (459)
Q Consensus 83 FvSsLLpLLaEY-~LqP~V~dA 103 (459)
.-+.|.+|+-++ .|+=-..+.
T Consensus 108 le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 554443333
No 19
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=39.28 E-value=70 Score=24.55 Aligned_cols=40 Identities=38% Similarity=0.426 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHh
Q 012634 4 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 45 (459)
Q Consensus 4 eei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQ 45 (459)
|.|..+|..|-+| |.+.=..|-.+||+-+.+|+-.|++||
T Consensus 3 eQi~~I~~~I~qA--k~~~r~dEV~~L~~NL~EL~~e~~~qq 42 (42)
T PF11464_consen 3 EQINIIESYIKQA--KAARRFDEVATLEENLRELQDEIDEQQ 42 (42)
T ss_dssp HHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888876 667778999999999999999999987
No 20
>PRK14140 heat shock protein GrpE; Provisional
Probab=39.19 E-value=3.8e+02 Score=26.18 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhhhc--CC--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 80 RYFFMSSMLGLLADY--GL--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 80 Rs~FvSsLLpLLaEY--~L--qP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
..-|+..|||.|--+ -| -|.-.+..+|+.+|+-.+++|..=|. .-.++.+. ..| ..|+|+.|+.-
T Consensus 86 ~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l~~~L~--k~GV~~i~-~~G-----e~FDP~~HEAv 154 (191)
T PRK14140 86 AQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQLLEALK--KEGVEVIE-AVG-----EQFDPNLHQAV 154 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHH--HCCCEeeC-CCC-----CCCChHHhccc
Confidence 456899999999877 22 24444567889999988888877774 23333332 112 24777777643
No 21
>PRK14160 heat shock protein GrpE; Provisional
Probab=37.72 E-value=3e+02 Score=27.31 Aligned_cols=63 Identities=10% Similarity=0.176 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhhhc--CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 80 RYFFMSSMLGLLADY--GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 80 Rs~FvSsLLpLLaEY--~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
..-|+..|||.+--+ -|.- ..+..+|+.+|+..+++|..=|. ..-|+++. | .| -|+|+.|+.-
T Consensus 110 ~e~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~kql~~vL~--k~GVe~I~--~---~G--~FDP~~HEAv 174 (211)
T PRK14160 110 CEDVLKELLPVLDNLERAAAV-EGSVEDLKKGIEMTVKQFKTSLE--KLGVEEIS--T---EG--EFDPNLHNAV 174 (211)
T ss_pred HHHHHHHHhhHHhHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CC--CCChHHhcee
Confidence 356899999998877 2321 24557899999999999888774 33445543 2 23 4888877644
No 22
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.85 E-value=80 Score=26.04 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.6
Q ss_pred hhHHHHhHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012634 29 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 64 (459)
Q Consensus 29 vLErRiA~m--RmAfDqqQqdlVdAASKaLSyRqdiiE 64 (459)
.+|.||.+| |+|| |++.|+.=++++..=|..|.
T Consensus 5 ~~e~Ri~~LE~~laf---Qe~tIe~Ln~~v~~Qq~~I~ 39 (72)
T PRK02793 5 SLEARLAELESRLAF---QEITIEELNVTVTAHEMEMA 39 (72)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 377888754 7777 88999999999988775553
No 23
>PRK14162 heat shock protein GrpE; Provisional
Probab=36.46 E-value=4e+02 Score=26.06 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcC--CC--CCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 81 YFFMSSMLGLLADYG--LW--PHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 81 s~FvSsLLpLLaEY~--Lq--P~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
.-|+..|||.+--+. |. |.-.+..+|+.+|+..+++|..=|. ..-|+++. ..| ..++|+.|+--
T Consensus 89 ~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l~~vL~--~~GV~~I~-~~G-----~~FDP~~HEAv 156 (194)
T PRK14162 89 QSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHLVKALK--DHGVTEIK-ADG-----EKFDPTLHQAV 156 (194)
T ss_pred HHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhhh
Confidence 458999999998873 22 3323457899999999999988875 44555554 122 24667766543
No 24
>PRK02119 hypothetical protein; Provisional
Probab=36.34 E-value=81 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=28.0
Q ss_pred cchhhhHHHHhHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012634 25 NEKYTLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 64 (459)
Q Consensus 25 nEKyvLErRiA~m--RmAfDqqQqdlVdAASKaLSyRqdiiE 64 (459)
+|-..||.||.+| |+|| |.+.|+.=++++..=|..|.
T Consensus 2 ~~~~~~e~Ri~~LE~rla~---QE~tie~LN~~v~~Qq~~id 40 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAF---QENLLEELNQALIEQQFVID 40 (73)
T ss_pred cchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455688888864 7777 88999999999887776653
No 25
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.60 E-value=1.5e+02 Score=32.86 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhh--hhhhcchhhhHHHHhHHHHHHhHHhhHHHH
Q 012634 3 KEEIHSLRQQIAVACLKE--LQLQNEKYTLERKVSELRMAIDEKQNEAIT 50 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE--~QilnEKyvLErRiA~mRmAfDqqQqdlVd 50 (459)
|+||..|.++|+.+.-.| .++..++..++++++.++-.+...++.+-.
T Consensus 404 e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~ 453 (650)
T TIGR03185 404 EEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLET 453 (650)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999998775533 345677788999999999999988887753
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.88 E-value=1.3e+02 Score=33.29 Aligned_cols=58 Identities=19% Similarity=0.416 Sum_probs=30.6
Q ss_pred cccCccchHHH-HHHhHhcceEEEEEeecCcccccceeEE-EEe---ecceEEEeCC--Ccceeeeec
Q 012634 340 IKCDLGMQSEI-DAYISRGHATFSVLMLMDSSENWEQATL-ILR---RSIYRIKIDS--TEAIIEERF 400 (459)
Q Consensus 340 I~cDpemq~~I-~~~l~~G~A~f~V~l~~~~~d~wE~atL-~ir---R~~Y~IK~~~--~~~~I~Ekf 400 (459)
-..|++-+..| +.++.. ++-+|-+++.. ..|..-+. .|+ -..|.|..+. +..+|++.|
T Consensus 585 ~~lD~~~r~~l~~~~~~~--~~~QvIils~d-~e~~~~~~~~l~~~i~~~y~l~y~~~~~~t~i~~gY 649 (650)
T TIGR03185 585 GRLDSSHRENLVVNYFPK--ASHQVLLLSTD-EEVDEKHYNLLKPNISHEYLLEFDDEARTSVVTEGY 649 (650)
T ss_pred cccChHHHHHHHHHHhhc--cCCeEEEEech-HhhCHHHHHHHHHHhhhheEEEecCCcCceeecCCC
Confidence 45777777775 356654 46777777442 23332111 111 1137777774 435666555
No 27
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.52 E-value=2.4e+02 Score=25.92 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=48.1
Q ss_pred chhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhc-CCCCCcccch
Q 012634 26 EKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADY-GLWPHVTNAS 104 (459)
Q Consensus 26 EKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~FvSsLLpLLaEY-~LqP~V~dAq 104 (459)
|--.++.+++.+.=-+|+.|+.+-+-.+.-...+.+.-+.+ -.++..+++-..|-++.-.+-+|+ .++=.+.+..
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 157 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKELEKEIRELQKELQDSR 157 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333333333332222 444555555555555555555555 4443334444
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhcc
Q 012634 105 AISNTVKHLYDQLQSQIRTSYDRIRD 130 (459)
Q Consensus 105 SIvsnvKvL~~~Lq~kl~~~e~klke 130 (459)
.-+...+.-+.+++..+....+++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554444
No 28
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=32.94 E-value=3.2e+02 Score=23.51 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=53.6
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhh--hhhhhhhhhhHHH-HHHHHHHhhhcCCCCCcccchhhhh
Q 012634 32 RKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLA--HDLKVAEDERYFF-MSSMLGLLADYGLWPHVTNASAISN 108 (459)
Q Consensus 32 rRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLt--yalq~aeQERs~F-vSsLLpLLaEY~LqP~V~dAqSIvs 108 (459)
++++++|-.+|+-=..||+- |+.|..+..+--++- ..+-+-+.+|-.- +..+.-+..++||.|.+
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L----L~~R~~~~~~ia~~K~~~~~~v~dp~Re~~vl~~~~~~a~~~gl~p~~-------- 70 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM----LAERFKCTSQVGVLKANAGLAPADPAREDYQIARLRRLAIDAGLDPEF-------- 70 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH--------
Confidence 35677887777766666654 555555555543333 2344444444433 35678888999999985
Q ss_pred hHHHHHHHHHHHHHhhhhhh
Q 012634 109 TVKHLYDQLQSQIRTSYDRI 128 (459)
Q Consensus 109 nvKvL~~~Lq~kl~~~e~kl 128 (459)
+..||+.+.+.....++++
T Consensus 71 -~e~i~~~i~~esir~q~~~ 89 (94)
T TIGR01795 71 -AEKFLNFIVTEVIKHHERI 89 (94)
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 3677888888777666553
No 29
>PRK11020 hypothetical protein; Provisional
Probab=32.87 E-value=68 Score=29.48 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=30.2
Q ss_pred HHHHHHHHHH-------HHHHhhh-----hhhhhcchhhhHHHHhHHHHHHhHHhhHHHH
Q 012634 3 KEEIHSLRQQ-------IAVACLK-----ELQLQNEKYTLERKVSELRMAIDEKQNEAIT 50 (459)
Q Consensus 3 eeei~~LRk~-------Ladas~K-----E~QilnEKyvLErRiA~mRmAfDqqQqdlVd 50 (459)
..||.+|-.+ ||.+... =+|+..|+..|+++|+.|+= +|.++|-.
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~---~~~~~lsk 60 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKE---VQSQKLSK 60 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4677766544 4544432 36899999999999999983 44444433
No 30
>PRK14139 heat shock protein GrpE; Provisional
Probab=32.52 E-value=3.7e+02 Score=26.13 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhc--CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 81 YFFMSSMLGLLADY--GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 81 s~FvSsLLpLLaEY--~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
.-|+..|||.+-.+ -|.=.-.+..+|+.+|+..+++|..=|. ..-|+++. ..| ..|+|+.|+--
T Consensus 82 ~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEAv 147 (185)
T PRK14139 82 ESFAESLLPVKDSLEAALADESGDLEKLREGVELTLKQLTSAFE--KGRVVEIN-PVG-----EKFDPHQHQAI 147 (185)
T ss_pred HHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH--HCCCceeC-CCC-----CCCChHHhhee
Confidence 46889999998877 2321113567899999999999888774 44555554 223 24667666543
No 31
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=32.01 E-value=1.7e+02 Score=30.70 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHH-----HhHHhhHHHHHHH
Q 012634 1 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSAL 53 (459)
Q Consensus 1 ~~eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmA-----fDqqQqdlVdAAS 53 (459)
|..+++..||++|.+.--.=+.||+|...+=++|+...-+ ||.++.+-|=...
T Consensus 1 ~~~~~L~~lR~~ID~ID~eIl~LL~~R~~~~~~I~~~K~~~g~pi~dp~RE~~vl~~~ 58 (360)
T PRK12595 1 MMNEELEQLRKEIDEINLQLLELLSKRGELVQEIGEEKTKQGTKRYDPVREREMLDMI 58 (360)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 5678899999999999888899999999999999999987 7777766554443
No 32
>PRK00295 hypothetical protein; Provisional
Probab=31.71 E-value=1.1e+02 Score=24.98 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=22.0
Q ss_pred hHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhH
Q 012634 30 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVL 63 (459)
Q Consensus 30 LErRiA~--mRmAfDqqQqdlVdAASKaLSyRqdii 63 (459)
+|.||.+ +|+|| |++.|+.=++++..=|..|
T Consensus 3 ~e~Ri~~LE~kla~---qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 3 LEERVTELESRQAF---QDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5666664 46676 7888888888887777444
No 33
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=29.93 E-value=2.2e+02 Score=25.68 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHhhhc----CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 012634 78 DERYFFMSSMLGLLADY----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 132 (459)
Q Consensus 78 QERs~FvSsLLpLLaEY----~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~ 132 (459)
....-|+..|||++.-+ .--+.-.+..++..+++.++++|..=|. .-.+.++.
T Consensus 58 ~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~~~l~~~L~--~~Gv~~i~ 114 (165)
T PF01025_consen 58 YALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMILKQLEDILE--KNGVEEIE 114 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHHHHHHHHHH--TTTEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH--HCCCEecC
Confidence 45567888999998766 2222334567888888888888876663 33444444
No 34
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=29.48 E-value=1.7e+02 Score=25.60 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHH-----HhHHhhHHHHHHHHHHH-------HhhhhHhhhhh
Q 012634 1 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELA-------RRKGVLEENLK 68 (459)
Q Consensus 1 ~~eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmA-----fDqqQqdlVdAASKaLS-------yRqdiiEENiR 68 (459)
|-++++..||++|.+.--+=+.|++|.-.+=.+|+...-+ ||..+..-|=....+.. +=..|.++=|.
T Consensus 1 m~~~~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~~~g~l~~~~i~~If~~I~~ 80 (102)
T TIGR01801 1 MSNQSLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQGPNHYDPAREEQMLNELIKINPGPFPTATIKGIFKEIFK 80 (102)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4567899999999998888889999999999999999876 77766655544333322 11223334444
Q ss_pred hhhhhhhhhhhhHHHHHH
Q 012634 69 LAHDLKVAEDERYFFMSS 86 (459)
Q Consensus 69 Ltyalq~aeQERs~FvSs 86 (459)
..-.+|....+.-..||+
T Consensus 81 ~Sr~~Q~~~~~~~~~~~~ 98 (102)
T TIGR01801 81 ASLALQESNDKKQLLVSR 98 (102)
T ss_pred HHHHHHHhccccceeeec
Confidence 444455555554444443
No 35
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=29.22 E-value=77 Score=32.93 Aligned_cols=77 Identities=25% Similarity=0.525 Sum_probs=55.7
Q ss_pred CCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccceeeeec-ccCC
Q 012634 260 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 338 (459)
Q Consensus 260 ~pG~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA~~p~Y~vTADDvd~~iAvec~PmDd~~rkGelVk~~a-Nd~~ 338 (459)
-||+++.|.||-+-|.+.-. |=.+.+|...+.=....-+|++|-+++- +|- ++ ++|+ |+++
T Consensus 145 q~G~~~vaAgy~~YG~~t~l---v~t~g~gv~~ftld~~~g~f~l~~~~i~-------ip~--~~------~~ys~n~~n 206 (327)
T PRK09293 145 QPGNNQVAAGYVLYGPSTML---VLTTGDGVHGFTLDPSLGEFVLTHENIR-------IPE--DG------KEYAINEGN 206 (327)
T ss_pred CCchhheeEEEEEEcCceEE---EEEeCCCEEEEEEeCCCCeEEEecCCce-------eCC--CC------CEEccCchh
Confidence 39999999999998876543 2334677666655555567888877654 232 22 6899 8888
Q ss_pred ccccCccchHHHHHHhH
Q 012634 339 KIKCDLGMQSEIDAYIS 355 (459)
Q Consensus 339 kI~cDpemq~~I~~~l~ 355 (459)
-=.+|+.+|+-| .++.
T Consensus 207 ~~~w~~~~~~yi-~~~~ 222 (327)
T PRK09293 207 QRHWEPGVKKYI-ELLA 222 (327)
T ss_pred hhhcCHHHHHHH-HHhc
Confidence 889999999999 5553
No 36
>PRK14146 heat shock protein GrpE; Provisional
Probab=29.01 E-value=5.8e+02 Score=25.29 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 81 YFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 81 s~FvSsLLpLLaEY~--L--qP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
.-|+..|||.|--+. | -+.-.+..+|+.+|+-.+++|..=|. ..-|+++. .-| ..|+|+.|+-.
T Consensus 104 e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~~L~--k~Gv~~i~-~~G-----~~FDP~~HeAv 171 (215)
T PRK14146 104 KSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILKEFYSVLE--KSNVIRFD-PKG-----EPFDPMSMEAL 171 (215)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH--HCcCeeeC-CCC-----CCCChhHhcee
Confidence 468999999998873 2 22234568899999999999988874 34444443 112 24677777543
No 37
>PRK04406 hypothetical protein; Provisional
Probab=28.92 E-value=1.3e+02 Score=25.09 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=24.5
Q ss_pred hhHHHHhHH--HHHHhHHhhHHHHHHHHHHHHhhhhH
Q 012634 29 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVL 63 (459)
Q Consensus 29 vLErRiA~m--RmAfDqqQqdlVdAASKaLSyRqdii 63 (459)
.||.||.+| |+|| |++.|+.=++++..=|.-|
T Consensus 8 ~le~Ri~~LE~~lAf---QE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 8 QLEERINDLECQLAF---QEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 477888754 7777 8899999999888777444
No 38
>PLN02542 fructose-1,6-bisphosphatase
Probab=28.62 E-value=85 Score=33.99 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=56.9
Q ss_pred CCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccceeeeec-ccCC
Q 012634 260 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 338 (459)
Q Consensus 260 ~pG~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA~~p~Y~vTADDvd~~iAvec~PmDd~~rkGelVk~~a-Nd~~ 338 (459)
-||+++.|.||-+-|.+.-. |=.+.+|...+.=....=+|++|.+++ . +|- + =++|+ |++|
T Consensus 234 qpG~~qvAAGY~lYGpsT~L---Vlt~G~GV~~FtLDp~~geFvLt~~~i------~-IP~--~------g~iySiN~~N 295 (412)
T PLN02542 234 QPGSNLLAAGYCMYSSSVIF---VLTIGTGVFSFTLDPMYGEFVLTQENI------Q-IPK--A------GKIYSFNEGN 295 (412)
T ss_pred CcchhhhEEEEEEEccceEE---EEEECCCEEEEEEcCCCCeEEEeCCCe------e-eCC--C------CcEeeeCccc
Confidence 39999999999998865322 223467777666444555788888775 1 222 2 26788 7788
Q ss_pred ccccCccchHHHHHHhHhc
Q 012634 339 KIKCDLGMQSEIDAYISRG 357 (459)
Q Consensus 339 kI~cDpemq~~I~~~l~~G 357 (459)
-=.+|+.+|.-|+.....|
T Consensus 296 ~~~W~~~~~~yi~~~~~~~ 314 (412)
T PLN02542 296 YQLWDDKLKKYIDDLKDPG 314 (412)
T ss_pred ccccCHHHHHHHHHHhhCC
Confidence 8889999999999998644
No 39
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=28.36 E-value=2.5e+02 Score=23.13 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=46.8
Q ss_pred ccccceeEEEEeecceEEEeCCCcceeeee----cC-CCceeEecC---CCcceEEEEecCCceeeeecCCCCCchhhHH
Q 012634 370 SENWEQATLILRRSIYRIKIDSTEAIIEER----FP-KEVSIKVPC---GLSTQFVLTFSDGSSYPFSTYNVRMRDTLVL 441 (459)
Q Consensus 370 ~d~wE~atL~irR~~Y~IK~~~~~~~I~Ek----fs-~~~~IkIp~---G~~~qfvi~~sdG~e~~Lr~~n~~~RD~iVL 441 (459)
.-.|..-.++|+.....+-.+......... .+ ..+.|.+.. .++.-|.|...+|..+.|.+.+....+.=|-
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~ 99 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVR 99 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHH
Confidence 568999999999877666554221100000 00 134444442 5667899999999999999988766555444
Q ss_pred HHH
Q 012634 442 TMR 444 (459)
Q Consensus 442 tlR 444 (459)
.||
T Consensus 100 aL~ 102 (104)
T cd01253 100 ALK 102 (104)
T ss_pred HHh
Confidence 443
No 40
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.26 E-value=2.9e+02 Score=21.47 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=48.5
Q ss_pred CcccccceeEEEEeecceEEEeC-CCc--ceeeeecCCCceeEecCCCcceEEEEecCCceeeeecCCCCCchhhHHHHH
Q 012634 368 DSSENWEQATLILRRSIYRIKID-STE--AIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMR 444 (459)
Q Consensus 368 ~~~d~wE~atL~irR~~Y~IK~~-~~~--~~I~Ekfs~~~~IkIp~G~~~qfvi~~sdG~e~~Lr~~n~~~RD~iVLtlR 444 (459)
.....|..-.++|+.....+-.. ++. .....-.=....|.++.+.+..|.|...+|..+.|.+.+...++.=|-.||
T Consensus 10 ~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~ 89 (91)
T cd01246 10 NYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDDSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALE 89 (91)
T ss_pred ccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHH
Confidence 34578999999998665444222 221 222211122234666777788999999988899999988776665554443
No 41
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=28.24 E-value=1e+02 Score=29.15 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=38.0
Q ss_pred ccccceeEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 012634 370 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 423 (459)
Q Consensus 370 ~d~wE~atL~irR~~Y~IK~~~~~~~I~Ekfs~~~~IkIp~G------~~~qfvi~~sdG 423 (459)
.+.|+ ..|-|.=.||.+...++.+.|.==||-...++||.| .+++.+|.+.|-
T Consensus 80 t~Gf~-~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dk 138 (178)
T PRK05498 80 TEGFE-KKLEIVGVGYRAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDK 138 (178)
T ss_pred CCCeE-EEEEEEeEEEEEEEeCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 45666 677777788888887666777666777788888875 345666666664
No 42
>PRK11281 hypothetical protein; Provisional
Probab=28.09 E-value=3e+02 Score=33.40 Aligned_cols=91 Identities=19% Similarity=0.384 Sum_probs=59.6
Q ss_pred hhHHHHhHHHHHH---hHHhhHH------H----------------HHHHHHHHHhhhhHhhhhh-------hhhhhhhh
Q 012634 29 TLERKVSELRMAI---DEKQNEA------I----------------TSALNELARRKGVLEENLK-------LAHDLKVA 76 (459)
Q Consensus 29 vLErRiA~mRmAf---DqqQqdl------V----------------dAASKaLSyRqdiiEENiR-------Ltyalq~a 76 (459)
.|.++||++|+.- .||+..| + ++..+-|.-|+++|++=++ +.=.||.+
T Consensus 357 ~l~~~iAdlrl~~f~~~q~~~~l~~~~~y~~~l~~~~~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~ 436 (1113)
T PRK11281 357 GLADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLN 436 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999753 2222111 1 2344678889999988433 45577888
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCcccchhh--------hhhHHHHHHHHHHHH
Q 012634 77 EDERYFFMSSMLGLLADYGLWPHVTNASAI--------SNTVKHLYDQLQSQI 121 (459)
Q Consensus 77 eQERs~FvSsLLpLLaEY~LqP~V~dAqSI--------vsnvKvL~~~Lq~kl 121 (459)
+|+-..-+.+|=-.|.|.-+|=+ ++..| ...+|.+++.+.|+.
T Consensus 437 q~Ql~~~~~~l~~~L~~~lfWv~--s~~pid~~w~~~~p~~~~~~~~~~~~~~ 487 (1113)
T PRK11281 437 QQQLLSVSDSLQSTLTQQIFWVN--SNKPMDLDWLKAFPQALKDQFKSLKITV 487 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhccC--CCCCcCHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999889999999999988844 33333 344444455544443
No 43
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.06 E-value=78 Score=29.72 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 012634 3 KEEIHSLRQQIAVA 16 (459)
Q Consensus 3 eeei~~LRk~Lada 16 (459)
++|+..|++.|++|
T Consensus 40 ~~El~~L~~~i~~A 53 (160)
T PRK06342 40 EDQLAQARAAYEAA 53 (160)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777666665
No 44
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.82 E-value=1.3e+02 Score=31.56 Aligned_cols=46 Identities=30% Similarity=0.265 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhH
Q 012634 2 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 47 (459)
Q Consensus 2 ~eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqd 47 (459)
|.|||.+|..+|+|.--|.-|+-.|+.-|=..+...+-+=.+-|-+
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999988887776554433333
No 45
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.69 E-value=5.2e+02 Score=28.68 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=14.3
Q ss_pred hhhhcchhhhHHHHhHHHHHHhHHhh
Q 012634 21 LQLQNEKYTLERKVSELRMAIDEKQN 46 (459)
Q Consensus 21 ~QilnEKyvLErRiA~mRmAfDqqQq 46 (459)
..+..+...|+.|+...|-+..+|++
T Consensus 77 ~~~~~~~~~l~~~le~~~~~~~ek~~ 102 (475)
T PRK10361 77 TSLEADLREVTTRMEAAQQHADDKIR 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666666655444
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.28 E-value=8.7e+02 Score=26.73 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHH
Q 012634 5 EIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFM 84 (459)
Q Consensus 5 ei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~Fv 84 (459)
.+.+.++.|+.-+-+=.+.-.+...||+-|+.+.-...+--..|+..+..-=.-+++|-+=|=+| -+|++.+.||.-++
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l-~~l~~q~r~qr~~L 117 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL-NALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34555555555555555555666666666666665555544445554443333334443333333 36778888999999
Q ss_pred HHHHHHhhhcCCCCC
Q 012634 85 SSMLGLLADYGLWPH 99 (459)
Q Consensus 85 SsLLpLLaEY~LqP~ 99 (459)
+-+|--+--.+..||
T Consensus 118 a~~L~A~~r~g~~p~ 132 (420)
T COG4942 118 AEQLAALQRSGRNPP 132 (420)
T ss_pred HHHHHHHHhccCCCC
Confidence 999888877788885
No 47
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=27.23 E-value=58 Score=33.25 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=30.8
Q ss_pred HhhHHHHH-HHHHHHHh---hhhHhhhhhhhh------------hhhhhhhh--hHHHH
Q 012634 44 KQNEAITS-ALNELARR---KGVLEENLKLAH------------DLKVAEDE--RYFFM 84 (459)
Q Consensus 44 qQqdlVdA-ASKaLSyR---qdiiEENiRLty------------alq~aeQE--Rs~Fv 84 (459)
-|.++|++ .+++|..| -+++-+++-+|| +-|+|||| |.-||
T Consensus 141 TqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFv 199 (271)
T KOG3083|consen 141 TQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFV 199 (271)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788887 78888888 467778888766 56888885 67775
No 48
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.21 E-value=5.1e+02 Score=24.71 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhc--CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 81 YFFMSSMLGLLADY--GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 81 s~FvSsLLpLLaEY--~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
.-|+..|||.+-.+ .|.-.-.+..+|+.+|+-.+++|..=|. ..-|+++. .-| ..++|+.|+--
T Consensus 68 ~~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~mi~k~l~~~L~--~~Gv~~i~-~~G-----~~FDP~~HeAv 133 (172)
T PRK14147 68 EKLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTYKQLLKVAA--DNGLTLLD-PVG-----QPFNPEHHQAI 133 (172)
T ss_pred HHHHHHHhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChHHhcee
Confidence 56899999999887 3332223457889999999999988775 33445544 112 24677777543
No 49
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=26.89 E-value=2.7e+02 Score=31.59 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHh------hhhhhhhcch-hhhHHHHhHHHHHHhHHhhHHHHH-------------HHHHHHHhhhh-
Q 012634 4 EEIHSLRQQIAVAC------LKELQLQNEK-YTLERKVSELRMAIDEKQNEAITS-------------ALNELARRKGV- 62 (459)
Q Consensus 4 eei~~LRk~Ladas------~KE~QilnEK-yvLErRiA~mRmAfDqqQqdlVdA-------------ASKaLSyRqdi- 62 (459)
+|+..||+.+-... +++-+-|+.. .-.|-||++|-..+..++.++.|. ||+||+.-+..
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK 166 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELK 166 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHH
Confidence 45667777664333 3344444433 355889999998888888888764 68888876543
Q ss_pred -------------Hhhhhhhhhhhhhhhh
Q 012634 63 -------------LEENLKLAHDLKVAED 78 (459)
Q Consensus 63 -------------iEENiRLtyalq~aeQ 78 (459)
=.+|+=||-+||.+++
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 3478888888887443
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.59 E-value=3.3e+02 Score=27.57 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHhhhh---------hhhhcchhhhHHHHhHHHHHHhH
Q 012634 2 QKEEIHSLRQQIAVACLKE---------LQLQNEKYTLERKVSELRMAIDE 43 (459)
Q Consensus 2 ~eeei~~LRk~Ladas~KE---------~QilnEKyvLErRiA~mRmAfDq 43 (459)
.+.||.-+|+|++++..|= ..|-.|.+++++|++.|+-...+
T Consensus 64 ~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 64 LESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777765442 13455666666666666554443
No 51
>PRK14149 heat shock protein GrpE; Provisional
Probab=26.50 E-value=3.9e+02 Score=26.13 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 80 RYFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 80 Rs~FvSsLLpLLaEY~--L--qP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
..-|+..|||.|-.+. | -+...+..+|+.+|+..+++|..-|. ..-++++. | .| .|+|+.|+.-
T Consensus 85 ~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~GV~~I~--~---~G--~FDP~~HEAv 152 (191)
T PRK14149 85 YEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLHEVLA--RHGIEGIE--C---LE--EFDPNFHNAI 152 (191)
T ss_pred HHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CC--CCChHHhhee
Confidence 3568999999998882 2 23335667899999999999988775 33444443 2 23 3888877643
No 52
>PRK14151 heat shock protein GrpE; Provisional
Probab=26.40 E-value=5.8e+02 Score=24.45 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhc--CCC--CCcc-cchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 81 YFFMSSMLGLLADY--GLW--PHVT-NASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 81 s~FvSsLLpLLaEY--~Lq--P~V~-dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
.-|+..|||.+--+ -|. ++-. ...+|+.+|+..+++|..-|. ..-|+++. ..| ..++|+.|+--
T Consensus 70 ~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~--k~Gv~~i~-~~G-----~~FDP~~HEAv 138 (176)
T PRK14151 70 EKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELTLKMFQDTLK--RYQLEAVD-PHG-----EPFNPEHHQAM 138 (176)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCCHHHhhcc
Confidence 46899999998877 222 2222 247899999999999988774 44555554 223 24677777543
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.61 E-value=1.6e+02 Score=29.09 Aligned_cols=46 Identities=35% Similarity=0.473 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHH
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA 48 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdl 48 (459)
.+|+..+|+.+.....+=..|.+.+..||++|++|.--++.+.++.
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~ 260 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY 260 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.59 E-value=4.7e+02 Score=31.39 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHh
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARR 59 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyR 59 (459)
++.+..+|..+++.--.-+++.++...|++.|.+++...+.....+-+.-.+-..-+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (1163)
T COG1196 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELE 431 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888999999999998888877776666554444433333
No 55
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=24.96 E-value=1.9e+02 Score=26.17 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=35.5
Q ss_pred cccCCC--cceeecccccCCcccceeeEEEEcccCceeeecCCCC--Cceeeecc
Q 012634 257 GEATPG--EKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATN--PEYVVTAD 307 (459)
Q Consensus 257 Gda~pG--~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA~~--p~Y~vTAD 307 (459)
+.+.|| +...-.||....-.-..|-.+..|+-|..-+|..+.+ -+|.||.-
T Consensus 42 ~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~ 96 (144)
T cd05829 42 GGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVDRV 96 (144)
T ss_pred CCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEEEeEE
Confidence 344444 3455567775422567899999999999999988543 77877753
No 56
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=2.7e+02 Score=32.24 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=75.6
Q ss_pred hhhcchhhhHHHHhHHHHHHhHHhhHH-------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHH
Q 012634 22 QLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSML 88 (459)
Q Consensus 22 QilnEKyvLErRiA~mRmAfDqqQqdl-------------VdAASKaLSyRqdiiEENiRLtyalq~aeQERs~FvSsLL 88 (459)
-|++||++|+.-|+.|--+.|-.++.+ +..-+|.|--++..||.+=|.+=++.---...-.++..
T Consensus 500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek-- 577 (698)
T KOG0978|consen 500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEK-- 577 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 367899999999999887777666543 33456777778888887776654433222222222222
Q ss_pred HHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 012634 89 GLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 132 (459)
Q Consensus 89 pLLaEY-~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~ 132 (459)
.=+.+ .+++.+.|+.+=+...+--.+||++++..+..||....
T Consensus 578 -~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 578 -SEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22344 67888888888888888888999999999999888776
No 57
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=24.63 E-value=1.3e+02 Score=28.48 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=38.0
Q ss_pred ccccceeEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 012634 370 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 423 (459)
Q Consensus 370 ~d~wE~atL~irR~~Y~IK~~~~~~~I~Ekfs~~~~IkIp~G------~~~qfvi~~sdG 423 (459)
.+.|+ ..|-|-=.||.+...++.+.|.==||-...+.||.| .+++.+|.+.|-
T Consensus 79 t~Gf~-~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dk 137 (175)
T TIGR03654 79 SEGFE-KKLEIVGVGYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDK 137 (175)
T ss_pred ccCcE-EEEEEEEEEEEEEEeCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 45666 677777888988887766777767787788888876 345666666654
No 58
>PRK04325 hypothetical protein; Provisional
Probab=24.25 E-value=1.8e+02 Score=24.17 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=23.6
Q ss_pred hHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012634 30 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVLE 64 (459)
Q Consensus 30 LErRiA~--mRmAfDqqQqdlVdAASKaLSyRqdiiE 64 (459)
+|.||.+ +|+|| |++.|+.=++++..=|..|.
T Consensus 7 ~e~Ri~~LE~klAf---QE~tIe~LN~vv~~Qq~~I~ 40 (74)
T PRK04325 7 MEDRITELEIQLAF---QEDLIDGLNATVARQQQTLD 40 (74)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5566664 46776 88899999999988775553
No 59
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.06 E-value=7.2e+02 Score=25.04 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhhhc-----CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 012634 80 RYFFMSSMLGLLADY-----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 151 (459)
Q Consensus 80 Rs~FvSsLLpLLaEY-----~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~ 151 (459)
..-|+..|||.+--+ .+.|.-.++.+|+.+++.++++|..-|. ..-|+++. ..| ..|+|+.|.-
T Consensus 116 ~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~--k~GV~~i~-~~G-----~~FDP~~HEA 184 (238)
T PRK14143 116 KCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLK--RLGVSPMR-VVG-----QEFDPNLHEA 184 (238)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCeeeC-CCC-----CCCChHHhhe
Confidence 456999999998877 2345445568899999999998877664 33344443 112 2366666643
No 60
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.99 E-value=7.2e+02 Score=24.66 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhhhcC--CC--CC------cccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCC
Q 012634 80 RYFFMSSMLGLLADYG--LW--PH------VTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRH 149 (459)
Q Consensus 80 Rs~FvSsLLpLLaEY~--Lq--P~------V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~ 149 (459)
..-|+..|||.+--+. |. +. -.+..+|+.+|+..+++|..=|. ...|+++. ..| ..|+|+.|
T Consensus 80 ~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLe--k~GV~~I~-~~G-----e~FDP~~H 151 (209)
T PRK14141 80 IAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALE--RHGVKKLD-PEG-----QKFDPNFH 151 (209)
T ss_pred HHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEEC-CCC-----CCCChHHh
Confidence 3468999999988762 21 21 12357899999999999988775 44555554 223 24667666
Q ss_pred CC
Q 012634 150 GV 151 (459)
Q Consensus 150 ~~ 151 (459)
+-
T Consensus 152 EA 153 (209)
T PRK14141 152 QA 153 (209)
T ss_pred ce
Confidence 53
No 61
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.85 E-value=3.7e+02 Score=25.45 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=24.3
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 012634 99 HVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 132 (459)
Q Consensus 99 ~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~ 132 (459)
.+..+...|..+|.-++.|..||..+..|.....
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888887777755444
No 62
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=23.54 E-value=2.6e+02 Score=22.34 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.2
Q ss_pred hhHHHHhHHHHHHhHHhhHHHHH
Q 012634 29 TLERKVSELRMAIDEKQNEAITS 51 (459)
Q Consensus 29 vLErRiA~mRmAfDqqQqdlVdA 51 (459)
.+|+-|.+||-.|-++.|=++||
T Consensus 23 ~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 23 EMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHH
Confidence 47999999999999999999987
No 63
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=23.52 E-value=6e+02 Score=29.20 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=13.2
Q ss_pred cccCccchHHHHHHhHh
Q 012634 340 IKCDLGMQSEIDAYISR 356 (459)
Q Consensus 340 I~cDpemq~~I~~~l~~ 356 (459)
|.||++....|+..+.+
T Consensus 606 i~~~~~~~~~~~~~lg~ 622 (1164)
T TIGR02169 606 VEFDPKYEPAFKYVFGD 622 (1164)
T ss_pred ccCcHHHHHHHHHHCCC
Confidence 78898888888776654
No 64
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=23.47 E-value=69 Score=30.52 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=65.0
Q ss_pred ecCCCCCccceeeeecccCCccccCccchHHHHHHhH--hcce----EEEEEe-----ecCccc--------------cc
Q 012634 319 PMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYIS--RGHA----TFSVLM-----LMDSSE--------------NW 373 (459)
Q Consensus 319 PmDd~~rkGelVk~~aNd~~kI~cDpemq~~I~~~l~--~G~A----~f~V~l-----~~~~~d--------------~w 373 (459)
+.+-+--.|.+++.|+-=..-+..+|-|+..|..-.. .... .+.|.+ ..+... .|
T Consensus 46 s~~~N~~~gg~~R~F~~l~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~d~ 125 (195)
T PF10014_consen 46 SKEYNPLNGGVVRHFEPLEDEFLSNPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGVDF 125 (195)
T ss_dssp ESSTT-SS-CEEE---B--HHHHTSHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SSSE
T ss_pred ccccchhcCCeeEECCcCChhHhcCHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCCCE
Confidence 3333444688999998877778899999998876632 2222 444331 111111 34
Q ss_pred ceeEEEEeecceEEEeCCCcceeeeecCCCceeEecCCCcceEEEEecCCceeeeec---C---CCCCchhhHHHH
Q 012634 374 EQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFST---Y---NVRMRDTLVLTM 443 (459)
Q Consensus 374 E~atL~irR~~Y~IK~~~~~~~I~Ekfs~~~~IkIp~G~~~qfvi~~sdG~e~~Lr~---~---n~~~RD~iVLtl 443 (459)
- ++++|.|.+. .|+...|.+. ........---++.+++|+......|..++ . .+..||++|+|+
T Consensus 126 v-~~~li~r~Ni----~GG~s~i~~~-~~~~~~~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlvitf 195 (195)
T PF10014_consen 126 V-FIHLINRHNI----EGGESQIYDN-DKEILFFFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLVITF 195 (195)
T ss_dssp E-EEEEEEEESE----EE--EEEEET-TSSEEEEE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEEEEE
T ss_pred E-EEEEEcCCCc----cCceEEEEeC-CCCcceEEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEEEeC
Confidence 4 6777888665 3444555222 233555666789999999999999998885 2 246799999874
No 65
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.23 E-value=1.2e+02 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHH
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL 37 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~m 37 (459)
.+++..|+++|.++--+-..+.+++.+++.+++.|
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45777888888877777777777777777777654
No 66
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=22.81 E-value=82 Score=28.02 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=30.6
Q ss_pred cceeecccccCCcccceeeEEEEcccCceeeecCCC-CCceeeec
Q 012634 263 EKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGAT-NPEYVVTA 306 (459)
Q Consensus 263 ~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA~-~p~Y~vTA 306 (459)
+-..-.||... .....|..+..|+.|..-+|.... ..+|.||+
T Consensus 42 gN~vIaGH~~~-~~~~~F~~L~~l~~GD~i~v~~~~~~~~Y~V~~ 85 (136)
T TIGR01076 42 TRIVITGHRGL-PTATMFTNLDKLKKGDMLYLHVGNEVLTYQVTS 85 (136)
T ss_pred CeEEEEecCCC-CCCCccCCHHHCCCCCEEEEEECCcEEEEEEEE
Confidence 45566677754 345799999999999998877443 45777765
No 67
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=22.16 E-value=1.3e+02 Score=28.97 Aligned_cols=86 Identities=17% Similarity=0.294 Sum_probs=47.2
Q ss_pred ccCccchHHHHHHhHh--cceEEEEEeecCcccccceeEEEEeecceEEEeCCCcceeeeecCCCceeEe-cCCCcceEE
Q 012634 341 KCDLGMQSEIDAYISR--GHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKV-PCGLSTQFV 417 (459)
Q Consensus 341 ~cDpemq~~I~~~l~~--G~A~f~V~l~~~~~d~wE~atL~irR~~Y~IK~~~~~~~I~Ekfs~~~~IkI-p~G~~~qfv 417 (459)
.+||+....+.+.+.. |..-+. .|++...+.|+.+.+.-.-..|.|+....+..++ .+.|.+ +.|...++.
T Consensus 90 ~Ydp~leQvt~~~~~~~~~~TP~~-lL~~~~~~~~~~f~v~~~~~~~~L~Pk~~~~~f~-----~~~l~fd~~~~l~~~~ 163 (204)
T TIGR00547 90 FYDPFVEQATAQWLKDATGNTPFM-LIARNDKSDWHQYNIKQNGDDFVLKPKASNGNIK-----QFDINVDADGIIHNFS 163 (204)
T ss_pred EECCCCceeeeeeccccccCCcHH-hhcCCchhhhhceEEEecCCEEEEEECCCCCCeE-----EEEEEECCCCCEEEEE
Confidence 3666655444333333 222211 2334445678866543322236665542111111 123555 477899999
Q ss_pred EEecCCceeeeecCC
Q 012634 418 LTFSDGSSYPFSTYN 432 (459)
Q Consensus 418 i~~sdG~e~~Lr~~n 432 (459)
|+++.|..-.+++.|
T Consensus 164 v~D~~Gq~t~i~f~~ 178 (204)
T TIGR00547 164 ATEKDDQRNLYQLKN 178 (204)
T ss_pred EEecCCCEEEEEEcC
Confidence 999999998888865
No 68
>PLN02939 transferase, transferring glycosyl groups
Probab=22.08 E-value=5.3e+02 Score=31.16 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=48.1
Q ss_pred HHhhhhhh-hhcchhhhHHHHh--HHHHHHhHHhhH--------------------------------HHHHHHHHHHHh
Q 012634 15 VACLKELQ-LQNEKYTLERKVS--ELRMAIDEKQNE--------------------------------AITSALNELARR 59 (459)
Q Consensus 15 das~KE~Q-ilnEKyvLErRiA--~mRmAfDqqQqd--------------------------------lVdAASKaLSyR 59 (459)
.-.+.+++ ||+||..|.++|. +||+|=-.-+-. -|.+-+++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 229 (977)
T PLN02939 152 LQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELD-- 229 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHH--
Confidence 33445554 8999999988865 666664211110 1112355554
Q ss_pred hhhHhhhhhhhhhhhh-----------------hhhhhHHHHHHHHHHhhhc
Q 012634 60 KGVLEENLKLAHDLKV-----------------AEDERYFFMSSMLGLLADY 94 (459)
Q Consensus 60 qdiiEENiRLtyalq~-----------------aeQERs~FvSsLLpLLaEY 94 (459)
.+-|||+-|--+++. .+.||+..=+||-.|=+.+
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 230 -VLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245899999988876 4567777778877776555
No 69
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=22.04 E-value=1.2e+02 Score=31.38 Aligned_cols=79 Identities=22% Similarity=0.414 Sum_probs=53.6
Q ss_pred CCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccceeeeec-ccCC
Q 012634 260 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 338 (459)
Q Consensus 260 ~pG~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA~~p~Y~vTADDvd~~iAvec~PmDd~~rkGelVk~~a-Nd~~ 338 (459)
-||+++.|.||-+-|.+.... =.+.+|...|.=....=+|++|..++ ++ | +++ ++|+ |++|
T Consensus 138 q~G~~~vAAgy~lYGp~T~lv---~t~g~gv~~ftld~~~g~f~lt~~~~------~i-p--~~~------~~ys~n~~n 199 (315)
T cd00354 138 QPGRNQVAAGYALYGPSTMLV---LTLGQGVHGFTLDPSLGEFILTHPNV------KI-P--KKG------KIYSINEGN 199 (315)
T ss_pred CcchhhheEEEEEEcCceEEE---EEeCCceEEEEEcCCCCeEEEecCCc------ee-C--CCC------CEECCCCcc
Confidence 489999999999988765543 23346766555444344677776552 22 2 222 6788 6566
Q ss_pred ccccCccchHHHHHHhHh
Q 012634 339 KIKCDLGMQSEIDAYISR 356 (459)
Q Consensus 339 kI~cDpemq~~I~~~l~~ 356 (459)
.=.+|+.+|+.|+..+..
T Consensus 200 ~~~w~~~~~~yi~~~~~~ 217 (315)
T cd00354 200 YRYWDEPVKKYIDDCKAG 217 (315)
T ss_pred hhcCCHHHHHHHHHHhcc
Confidence 667999999999988764
No 70
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.63 E-value=5.3e+02 Score=22.99 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhh
Q 012634 4 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKL 69 (459)
Q Consensus 4 eei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRL 69 (459)
++|..||+.+..+-..=.++..+.......+...+-.+..+...|-..-+.+=..+.|+-+-|=-|
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777776666777777777777777777777777776666666666666666666433
No 71
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.56 E-value=1.1e+02 Score=20.97 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 012634 4 EEIHSLRQQIAV 15 (459)
Q Consensus 4 eei~~LRk~Lad 15 (459)
+|+..||.+|.|
T Consensus 1 ~E~~rlr~rI~d 12 (23)
T PF04508_consen 1 REMNRLRNRISD 12 (23)
T ss_pred ChHHHHHHHHHH
Confidence 477888888776
No 72
>PLN02262 fructose-1,6-bisphosphatase
Probab=21.55 E-value=1.2e+02 Score=31.90 Aligned_cols=77 Identities=17% Similarity=0.335 Sum_probs=52.7
Q ss_pred CCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccceeeeec-ccCCc
Q 012634 261 PGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQNK 339 (459)
Q Consensus 261 pG~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA~~p~Y~vTADDvd~~iAvec~PmDd~~rkGelVk~~a-Nd~~k 339 (459)
||+++.|.||-+-|.+....=.+ .+|...|.=....=+|++|..++- + |- + =++|+ |++|-
T Consensus 158 ~G~~qvAAGY~lYG~~T~lV~t~---g~gv~~Ftld~~~gef~lt~~~i~------i-p~--~------~~~ys~N~~n~ 219 (340)
T PLN02262 158 PGKEMVAAGYCMYGSSCTLVLST---GGGVNGFTLDPSLGEFILTHPDIK------I-PK--K------GKIYSVNEGNA 219 (340)
T ss_pred chHhhhheeeeeecCceEEEEEe---CCCeeEEEEcCCCCEEEEeCCCce------e-CC--C------CCEeccCccch
Confidence 99999999999999876655443 456554443333445666665541 1 22 2 26888 66777
Q ss_pred cccCccchHHHHHHhH
Q 012634 340 IKCDLGMQSEIDAYIS 355 (459)
Q Consensus 340 I~cDpemq~~I~~~l~ 355 (459)
=.+|+.+|.-|+....
T Consensus 220 ~~w~~~~~~yi~~~~~ 235 (340)
T PLN02262 220 KNWDGPTAKYVEKCKF 235 (340)
T ss_pred hhcCHHHHHHHHHHhh
Confidence 7899999999998763
No 73
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=21.51 E-value=1.2e+02 Score=30.18 Aligned_cols=55 Identities=29% Similarity=0.337 Sum_probs=39.3
Q ss_pred eecCCCceeEecCC-CcceEEEEecCCceeeeecCCCCC----chhhHHHHHHHHhhhhc
Q 012634 398 ERFPKEVSIKVPCG-LSTQFVLTFSDGSSYPFSTYNVRM----RDTLVLTMRMLQGKALD 452 (459)
Q Consensus 398 Ekfs~~~~IkIp~G-~~~qfvi~~sdG~e~~Lr~~n~~~----RD~iVLtlR~F~~~Ale 452 (459)
|+|-|.+.|-+=.+ .|.+..|.++||..|++=++.... +|.-|.-|=-+.+..+.
T Consensus 2 ~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~ 61 (253)
T cd05163 2 ERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLS 61 (253)
T ss_pred cccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHh
Confidence 67888887766565 488888999999999998875433 55556555445566665
No 74
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=21.11 E-value=1.1e+02 Score=27.46 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 35 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA 35 (459)
++||..|+.+-..| ...-+.||--|||||++
T Consensus 13 ~~Ei~~L~ekarKA--Eq~G~~nE~aV~erK~~ 43 (102)
T PF08838_consen 13 RQEIARLKEKARKA--EQLGIVNEYAVYERKII 43 (102)
T ss_dssp HHHHHHHHHHHHHH--HHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 35777777776443 34567899999999985
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.08 E-value=4.8e+02 Score=25.47 Aligned_cols=85 Identities=22% Similarity=0.231 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhh----hhhhhhhhhhhhhhhHHH
Q 012634 8 SLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEE----NLKLAHDLKVAEDERYFF 83 (459)
Q Consensus 8 ~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEE----NiRLtyalq~aeQERs~F 83 (459)
+..+++....-.-.+++.|...|++.+.-|+. |-++.+..|++.-+.+..-+.=|++ .-.|.=-+...-++.-.|
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEV-YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677777778888887775 5666666777666555443333321 111222223333444455
Q ss_pred HHHHHHHhhh
Q 012634 84 MSSMLGLLAD 93 (459)
Q Consensus 84 vSsLLpLLaE 93 (459)
|..-||++.+
T Consensus 118 v~~d~Pf~~~ 127 (251)
T PF11932_consen 118 VELDLPFLLE 127 (251)
T ss_pred HhcCCCCChH
Confidence 5555555444
No 76
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.89 E-value=3.1e+02 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhh
Q 012634 4 EEIHSLRQQIAVACLKELQLQNEKYTL 30 (459)
Q Consensus 4 eei~~LRk~Ladas~KE~QilnEKyvL 30 (459)
.++.+|+.+++.+..+..+|..|+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888777777776666544
No 77
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.70 E-value=6.4e+02 Score=25.21 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCcccchhhhhh-HHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 80 RYFFMSSMLGLLADYGLWPHVTNASAISNT-VKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 80 Rs~FvSsLLpLLaEY~LqP~V~dAqSIvsn-vKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
..-|+..|||.|-.+.+-=. +.+.... +|.+.++|..-|. ...|+++. ..| ..|+|+.|+-.
T Consensus 119 ~~~~~~~LLpVlDnLerAl~---~~~~~~g~l~~i~~~l~~vL~--k~Gve~I~-~~G-----e~FDP~~HEAV 181 (218)
T PRK14164 119 KAGVATDLLPILDDLDLAEQ---HGDLNEGPLKAFSDKLTNVLA--GLKVEKFG-EEG-----DAFDPEIHEAV 181 (218)
T ss_pred HHHHHHHHhhHHhHHHHHHh---cccccccHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhee
Confidence 45789999998877632101 1112222 6666666666554 33444443 222 24677777543
No 78
>PRK14150 heat shock protein GrpE; Provisional
Probab=20.04 E-value=8.1e+02 Score=23.76 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=65.8
Q ss_pred hhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhh---hhHHHHHHHHHHhhhc-
Q 012634 19 KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED---ERYFFMSSMLGLLADY- 94 (459)
Q Consensus 19 KE~QilnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQ---ERs~FvSsLLpLLaEY- 94 (459)
.|...-++.-.++..|..|.-..++.+.++-|.-..+++ + =||+|--.+-...+- -..-|+..|||.+-.+
T Consensus 28 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~kd~~lR~~A---e--feN~rkR~~kE~~~~~~~a~~~~~~~lL~v~Dnle 102 (193)
T PRK14150 28 DEAELEDELDEADARIAELEAQLAEAQAEERDSVLRARA---E--VENIRRRAEQDVEKAHKFALEKFANELLPVIDNLE 102 (193)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 444444444444455555554444433322222222221 1 245554443333222 2346899999999887
Q ss_pred -CC---CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 012634 95 -GL---WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 152 (459)
Q Consensus 95 -~L---qP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~~ 152 (459)
-| .+.-.+..+|+.+|+-.+++|..-|. ..-|+++. ..| ..|+|+.|+.-
T Consensus 103 rAl~~~~~~~~~~~~~~~Gv~mi~~~l~~~L~--~~Gv~~i~-~~G-----~~FDP~~HeAv 156 (193)
T PRK14150 103 RALQAADKENEALKALIEGVELTLKSLLDTVA--KFGVEVVG-PVG-----EPFNPEVHQAI 156 (193)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCeeeC-CCC-----CCCCHhHccee
Confidence 22 23334468899999999999988885 44456655 223 23677777543
No 79
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.01 E-value=2.5e+02 Score=22.78 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=19.9
Q ss_pred hHHHHhHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012634 30 LERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 64 (459)
Q Consensus 30 LErRiA~m--RmAfDqqQqdlVdAASKaLSyRqdiiE 64 (459)
||.||.+| |+|| |.+.|+.=++.+..-|.-|+
T Consensus 2 le~Ri~~LE~~la~---qe~~ie~Ln~~v~~Qq~~I~ 35 (69)
T PF04102_consen 2 LEERIEELEIKLAF---QEDTIEELNDVVTEQQRQID 35 (69)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 55566543 5565 66777777777666665554
Done!