Query 012634
Match_columns 459
No_of_seqs 49 out of 51
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 13:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 99.9 1.6E-25 5.6E-30 211.2 18.2 187 253-447 15-210 (230)
2 3he5_B Synzip2; heterodimeric 52.1 23 0.00078 26.7 4.7 40 7-46 6-45 (52)
3 4f9p_D 103.2 anti-BTN3A1 antib 46.9 2.1E+02 0.0072 27.8 12.5 57 260-320 13-86 (254)
4 4ani_A Protein GRPE; chaperone 42.9 2.2E+02 0.0076 26.8 11.4 109 29-151 63-175 (213)
5 3o0z_A RHO-associated protein 42.7 1.1E+02 0.0037 28.3 8.7 42 5-46 28-83 (168)
6 3pl0_A Uncharacterized protein 41.3 70 0.0024 30.7 7.6 123 317-445 91-247 (254)
7 4hci_A Cupredoxin 1; structura 41.2 20 0.00069 28.3 3.3 32 399-431 24-55 (100)
8 2rlo_A Centaurin-gamma 1; spli 35.4 39 0.0013 27.4 4.2 41 411-451 87-127 (128)
9 1gk7_A Vimentin; intermediate 34.6 33 0.0011 24.6 3.2 34 3-36 5-38 (39)
10 2gtv_X CM, chorismate mutase; 33.6 1.4E+02 0.0048 25.1 7.4 76 4-79 3-103 (104)
11 3efg_A Protein SLYX homolog; x 30.8 67 0.0023 25.8 4.8 34 29-65 11-46 (78)
12 3dde_A TENA/THI-4 protein, dom 29.3 48 0.0016 30.1 4.1 51 34-84 179-235 (239)
13 1nkw_E 50S ribosomal protein L 29.1 84 0.0029 29.7 5.8 54 369-423 106-165 (212)
14 4h22_A Leucine-rich repeat fli 29.0 1.2E+02 0.0039 26.2 6.1 40 32-74 58-97 (103)
15 2etd_A LEMA protein; bromodoma 27.9 45 0.0015 30.2 3.7 48 73-132 75-123 (171)
16 3tnu_B Keratin, type II cytosk 27.8 1E+02 0.0035 26.2 5.7 45 2-46 34-78 (129)
17 3oja_B Anopheles plasmodium-re 26.0 1.5E+02 0.005 30.0 7.4 30 13-42 511-540 (597)
18 3oja_B Anopheles plasmodium-re 25.3 17 0.00059 36.7 0.5 27 23-49 468-494 (597)
19 2lf0_A Uncharacterized protein 25.1 74 0.0025 28.2 4.3 36 3-38 9-56 (123)
20 1i84_S Smooth muscle myosin he 24.7 1.7E+02 0.0059 33.2 8.3 13 4-16 864-876 (1184)
21 3tnu_A Keratin, type I cytoske 24.1 79 0.0027 27.1 4.3 45 3-47 37-81 (131)
22 1iby_A Nitrosocyanin; RED copp 23.8 1.9E+02 0.0065 22.9 6.3 31 400-431 35-65 (112)
23 2cx7_A Sterol carrier protein 22.7 44 0.0015 28.4 2.4 50 247-309 29-81 (130)
24 1m1j_B Fibrinogen beta chain; 21.9 4.9E+02 0.017 27.2 10.4 17 113-129 176-192 (464)
25 2dfs_A Myosin-5A; myosin-V, in 20.4 2.9E+02 0.0099 31.5 9.0 29 102-130 1020-1048(1080)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=99.93 E-value=1.6e-25 Score=211.23 Aligned_cols=187 Identities=20% Similarity=0.322 Sum_probs=158.9
Q ss_pred ceeecccCCCcceee--cccccCCcccceeeEEEEc-ccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccce
Q 012634 253 FQIIGEATPGEKLLG--CGYPVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 329 (459)
Q Consensus 253 l~I~Gda~pG~~L~a--cG~~~ngtt~C~FqWvRhl-edGt~~~IegA~~p~Y~vTADDvd~~iAvec~PmDd~~rkGel 329 (459)
+.+-|.-..|.-|+- |--..--.|+|+|||+|++ ++|+.+.|.||+.|.|.++++|||.+|++||+| .|+.
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 345566677776653 3333334799999999999 889999999999999999999999999999998 3899
Q ss_pred eeeecccCCccccCccchHHHHHHhHhcceEEEEEeecCcccccc-eeEEEEeecceEEEeCC-CcceeeeecCCCceeE
Q 012634 330 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK 407 (459)
Q Consensus 330 Vk~~aNd~~kI~cDpemq~~I~~~l~~G~A~f~V~l~~~~~d~wE-~atL~irR~~Y~IK~~~-~~~~I~Ekfs~~~~Ik 407 (459)
+.+|+| +||+|||+|++.|++++.+|.+.|.|.++...-+.|+ ++++++.+-.++||-.. ..++++|+||++.++=
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC 166 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC 166 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence 999999 9999999999999999999999999999955567788 99999999999999985 4499999999987664
Q ss_pred ecCC--C--cceEEEEecCCceeeeecCCCCCchhhHHHHHHHH
Q 012634 408 VPCG--L--STQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQ 447 (459)
Q Consensus 408 Ip~G--~--~~qfvi~~sdG~e~~Lr~~n~~~RD~iVLtlR~F~ 447 (459)
=..| + +.-.+-.-.-|..+.|-++..|.|..+.+.-|-|-
T Consensus 167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA 210 (230)
T 4dix_A 167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA 210 (230)
T ss_dssp ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence 4443 2 33455566789999999999999999999999984
No 2
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=52.13 E-value=23 Score=26.70 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhh
Q 012634 7 HSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 46 (459)
Q Consensus 7 ~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQq 46 (459)
.-|||+||..--.-+||-.+..-|||-||.||=-+-.-.+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 5699999998888999999999999999999965544433
No 3
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=46.95 E-value=2.1e+02 Score=27.80 Aligned_cols=57 Identities=21% Similarity=0.478 Sum_probs=36.1
Q ss_pred CCCcce----eecccccCCcccceeeEEEEc-------------ccCceeeecCCCCCceeeeccccCceEEEEEEec
Q 012634 260 TPGEKL----LGCGYPVRGTTLCMFQWVRHL-------------QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPM 320 (459)
Q Consensus 260 ~pG~~L----~acG~~~ngtt~C~FqWvRhl-------------edGt~~~IegA~~p~Y~vTADDvd~~iAvec~Pm 320 (459)
-||+-| .|+||+++ ...+-|||+- .+|...|-+..++ .+++|.|.-.+.+-++..-|
T Consensus 13 kPG~Sl~lSC~~SG~tf~---~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kg-R~TiSrD~s~nt~yLqm~sL 86 (254)
T 4f9p_D 13 RPGTSVKVSCKASGYAFT---SYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKD-RTTLTADQSSSTAYMQLSSL 86 (254)
T ss_dssp CTTCCEEEEEEEESSCGG---GCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTT-TEEEEEETTTTEEEEEECSC
T ss_pred CCCCCeEEEEEEeCCChh---hCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCC-CEEEeeccCCCcCeeEEccC
Confidence 366655 35688874 2457788874 2334444443333 67899998888887776544
No 4
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=42.85 E-value=2.2e+02 Score=26.84 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=59.9
Q ss_pred hhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcC--C--CCCcccch
Q 012634 29 TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYG--L--WPHVTNAS 104 (459)
Q Consensus 29 vLErRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~FvSsLLpLLaEY~--L--qP~V~dAq 104 (459)
.|+.+|+.|.--.++.+..+.-+..--=.||+..-.|=-.+ ...-..-|+..|||.|--+. | -|.-.+..
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~------~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~ 136 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAA------EKYRAQSLASDLLPVLDNFERALKIETDNEQAK 136 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHhccccccHH
Confidence 34444444443333333333333333334555444332211 11223469999999987762 2 24445667
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 012634 105 AISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 151 (459)
Q Consensus 105 SIvsnvKvL~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~~~ 151 (459)
++..+|+.++++|..=|. ..-|+.+. | .|. .|+|+.|+-
T Consensus 137 ~l~eGvemi~k~l~~~L~--k~Gv~~I~--~---~Ge-~FDP~~HeA 175 (213)
T 4ani_A 137 SILQGMEMVYRSLVDALK--KEGVEAIE--A---VGK-PFDPYLHQA 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTEECCC--C---SSS-CCCTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CCC-CCCHHHcee
Confidence 899999999999988874 33444443 1 222 367777754
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=42.67 E-value=1.1e+02 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhh---------hh-----hhhhcchhhhHHHHhHHHHHHhHHhh
Q 012634 5 EIHSLRQQIAVACL---------KE-----LQLQNEKYTLERKVSELRMAIDEKQN 46 (459)
Q Consensus 5 ei~~LRk~Ladas~---------KE-----~QilnEKyvLErRiA~mRmAfDqqQq 46 (459)
--..|||.-++++. +| .+|.+.|-.||+-++.|.-+.++...
T Consensus 28 ~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 28 TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888877764 34 35778899999999999999887653
No 6
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}
Probab=41.34 E-value=70 Score=30.71 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=77.7
Q ss_pred EEecCCCCCccceeeeecccCCccccCccchHHHHHHhH-----hcc--eEEEEE-----eecCccc-------------
Q 012634 317 CIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYIS-----RGH--ATFSVL-----MLMDSSE------------- 371 (459)
Q Consensus 317 c~PmDd~~rkGelVk~~aNd~~kI~cDpemq~~I~~~l~-----~G~--A~f~V~-----l~~~~~d------------- 371 (459)
+|+.|=+--.|.+++.|.-=..-+.-+|.||+.|..... .++ ..+.|. .......
T Consensus 91 ~Qs~~~N~~~Ggi~R~F~pl~~~~~~~p~~~~Ll~~~~~~~~~~~~~~~~~w~I~vHq~Ri~a~~~~g~ptPEGiHrDG~ 170 (254)
T 3pl0_A 91 WQPTTYNALHGGMERWFEPLSNEMIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGV 170 (254)
T ss_dssp EECSSTTCSSCSEEECCCBCCHHHHTSHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEEEETTSSCCCCCTTCSBCCSS
T ss_pred cCchhcccccCCeEEECCCcchhhhcCHHHHHHHHHHHHHhhhccCCcCCceEEEEEEEEEEEcCCCCccCCcccccCCC
Confidence 355555566789999998877788888999999987543 333 233322 2221111
Q ss_pred ccceeEEEEeecceEEEeCCCcceeeeecCCCceeEecCCCcceEEEEecCCceeeeec---CC------CCCchhhHHH
Q 012634 372 NWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFST---YN------VRMRDTLVLT 442 (459)
Q Consensus 372 ~wE~atL~irR~~Y~IK~~~~~~~I~Ekfs~~~~IkIp~G~~~qfvi~~sdG~e~~Lr~---~n------~~~RD~iVLt 442 (459)
.|- +++.|.|.+.. |+...|-+.- .......---++.+++|+......|..++ .+ +..||++|+|
T Consensus 171 d~v-~v~lv~R~Ni~----GGet~I~~~~-~~~~~~~~l~~p~d~llv~D~~~~H~vTpI~~~~~~~~~~~g~RDvlVvt 244 (254)
T 3pl0_A 171 DFV-AVVFIGRQGVR----GGETRVFDAA-GPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPADPAVPAHRDTLVLT 244 (254)
T ss_dssp SEE-EEEEEEEESEE----ECCEEEEETT-SSEEEEECCCSTTCEEEEETTTEEEEECCEEESCTTCTTSCCEEEEEEEE
T ss_pred CEE-EEEEecCCccc----cceEEEEcCC-CCccceeEecCCCcEEEEeCCcccCCCCccccCCCCCCCCceEEEEEEEE
Confidence 344 56777776543 3444443321 12334444678899999998888888775 33 3569999999
Q ss_pred HHH
Q 012634 443 MRM 445 (459)
Q Consensus 443 lR~ 445 (459)
+|.
T Consensus 245 f~~ 247 (254)
T 3pl0_A 245 YRS 247 (254)
T ss_dssp EES
T ss_pred ecC
Confidence 864
No 7
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=41.19 E-value=20 Score=28.27 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=24.4
Q ss_pred ecCCCceeEecCCCcceEEEEecCCceeeeecC
Q 012634 399 RFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 431 (459)
Q Consensus 399 kfs~~~~IkIp~G~~~qfvi~~sdG~e~~Lr~~ 431 (459)
+|+|+. |+|+-|.+-.|++...|+..|.+...
T Consensus 24 ~F~P~~-i~v~~G~tV~~~~~n~d~~~H~~~~~ 55 (100)
T 4hci_A 24 YFNPNV-ITIPINESTTLLLKNKGKSEHTFTIK 55 (100)
T ss_dssp EEESSE-EEECTTSCEEEEEEECSSSCEEEEEG
T ss_pred EEeCCE-EEECCCCEEEEEEEcCCCceEEEEEe
Confidence 577763 78888888888888888777877653
No 8
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=35.44 E-value=39 Score=27.40 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCcceEEEEecCCceeeeecCCCCCchhhHHHHHHHHhhhh
Q 012634 411 GLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKAL 451 (459)
Q Consensus 411 G~~~qfvi~~sdG~e~~Lr~~n~~~RD~iVLtlR~F~~~Al 451 (459)
+...-|.|+..+|..+.|.+.+...||.=|-.|+.-+..+|
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l 127 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHc
Confidence 35567999999889999999999999999998888777665
No 9
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.63 E-value=33 Score=24.57 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhH
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSE 36 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~ 36 (459)
+|++..|=.|||.|.-|=-.|=.+...||.+|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999988888888889888753
No 10
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=33.62 E-value=1.4e+02 Score=25.07 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhhhh--------hhhcchhhhHHHHhHHHHHH-----hHHhh-HHHHHHHHH-----------HHH
Q 012634 4 EEIHSLRQQIAVACLKEL--------QLQNEKYTLERKVSELRMAI-----DEKQN-EAITSALNE-----------LAR 58 (459)
Q Consensus 4 eei~~LRk~Ladas~KE~--------QilnEKyvLErRiA~mRmAf-----DqqQq-dlVdAASKa-----------LSy 58 (459)
+++..||++|.+.--+=+ .|++|.-.|=+.||....+- |.... .+++...+. -..
T Consensus 3 ~~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~i 82 (104)
T 2gtv_X 3 EKLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKI 82 (104)
T ss_dssp THHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 468899999999888888 89999999999999998753 44333 333332221 123
Q ss_pred hhhhHhhhhhhhhhhhhhhhh
Q 012634 59 RKGVLEENLKLAHDLKVAEDE 79 (459)
Q Consensus 59 RqdiiEENiRLtyalq~aeQE 79 (459)
=+.||++++++-+.+-...||
T Consensus 83 f~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 83 FQRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 456777777777766655554
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.81 E-value=67 Score=25.83 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=25.3
Q ss_pred hhHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhh
Q 012634 29 TLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEE 65 (459)
Q Consensus 29 vLErRiA~--mRmAfDqqQqdlVdAASKaLSyRqdiiEE 65 (459)
.||.||.+ +|+|| |.+.|+.=++++..-|.-|..
T Consensus 11 ~le~Ri~~LE~klAf---qE~tIeeLn~~v~~Qq~~Id~ 46 (78)
T 3efg_A 11 ELEARLVELETRLSF---QEQALTELSEALADARLTGAR 46 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 36677764 47777 788899888888887777764
No 12
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=29.25 E-value=48 Score=30.10 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=38.9
Q ss_pred HhHHHHHHh------HHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHH
Q 012634 34 VSELRMAID------EKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFM 84 (459)
Q Consensus 34 iA~mRmAfD------qqQqdlVdAASKaLSyRqdiiEENiRLtyalq~aeQERs~Fv 84 (459)
+..+|-..| ++|+.+|++|-.+...-.+++++=-+--..++..+-+|+.|+
T Consensus 179 ~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f~~l~~~~~~~~~~~~~~~~~~ 235 (239)
T 3dde_A 179 AEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFL 235 (239)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCCCC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHH
Confidence 344555554 568999999999999999998886655444499999999986
No 13
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=29.05 E-value=84 Score=29.75 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=42.0
Q ss_pred cccccceeEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 012634 369 SSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 423 (459)
Q Consensus 369 ~~d~wE~atL~irR~~Y~IK~~~~~~~I~Ekfs~~~~IkIp~G------~~~qfvi~~sdG 423 (459)
-.+.|+ ..|-|-=-||.+...+..+.|.==||-.+.+.||.| .+++++|.+.|-
T Consensus 106 Vt~Gf~-kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDK 165 (212)
T 1nkw_E 106 VSDGYT-INLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDK 165 (212)
T ss_pred eccCeE-EEEEEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCH
Confidence 356777 788899999999988777888777898899999977 345666666664
No 14
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.98 E-value=1.2e+02 Score=26.20 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=22.4
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Q 012634 32 RKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLK 74 (459)
Q Consensus 32 rRiA~mRmAfDqqQqdlVdAASKaLSyRqdiiEENiRLtyalq 74 (459)
|-+..++.++|-.|.++.. .--+|.+|-++|+| ||+.||.
T Consensus 58 re~e~~Kr~~~~L~~~~~~-lk~~L~qRD~LI~E--~~~~~~~ 97 (103)
T 4h22_A 58 KEFEREKHAHSILQFQFAE-VKEALKQREEMLEP--KLAAALE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHTTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHH
Confidence 3466677788876666544 45589999999998 5666653
No 15
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=27.88 E-value=45 Score=30.19 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=37.7
Q ss_pred hhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 012634 73 LKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 132 (459)
Q Consensus 73 lq~aeQERs~FvSsLLpLLaEY-~LqP~V~dAqSIvsnvKvL~~~Lq~kl~~~e~klke~~ 132 (459)
++.||++.+.-++.|+-+..-| +|... .-|.+||.+|..+|.+|.-..
T Consensus 75 ~~~ae~~Ls~aL~~L~av~E~YP~LKan------------~~f~~Lq~eL~~~EnrIa~AR 123 (171)
T 2etd_A 75 SAQADAELSSALSRLLAIAENYPNLXAD------------ANFRQLMDELAGTENRIAVAR 123 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888877777 55443 358999999999999986555
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.75 E-value=1e+02 Score=26.19 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhh
Q 012634 2 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 46 (459)
Q Consensus 2 ~eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQq 46 (459)
.++||..||+.|-...+.=--+.+-|..||+.|+++.--|+.+-.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~ 78 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK 78 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999887776556788999999999999887765543
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.03 E-value=1.5e+02 Score=29.98 Aligned_cols=30 Identities=3% Similarity=-0.080 Sum_probs=12.1
Q ss_pred HHHHhhhhhhhhcchhhhHHHHhHHHHHHh
Q 012634 13 IAVACLKELQLQNEKYTLERKVSELRMAID 42 (459)
Q Consensus 13 Ladas~KE~QilnEKyvLErRiA~mRmAfD 42 (459)
+....-+...+..+...+++.+..+.-.++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 333333333444444444444444443443
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.29 E-value=17 Score=36.70 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=14.5
Q ss_pred hhcchhhhHHHHhHHHHHHhHHhhHHH
Q 012634 23 LQNEKYTLERKVSELRMAIDEKQNEAI 49 (459)
Q Consensus 23 ilnEKyvLErRiA~mRmAfDqqQqdlV 49 (459)
+-+|....|+-++.++.-+|++.+++.
T Consensus 468 l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 468 LTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 334444556666666666665554433
No 19
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.07 E-value=74 Score=28.17 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhh------------hhhhcchhhhHHHHhHHH
Q 012634 3 KEEIHSLRQQIAVACLKE------------LQLQNEKYTLERKVSELR 38 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE------------~QilnEKyvLErRiA~mR 38 (459)
..||.+|-.+|..+--|+ +|+..|+..|+++|+.||
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467877765555444433 588899999999999998
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.67 E-value=1.7e+02 Score=33.17 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 012634 4 EEIHSLRQQIAVA 16 (459)
Q Consensus 4 eei~~LRk~Lada 16 (459)
+|+..|+..|...
T Consensus 864 ~eL~el~~~L~~l 876 (1184)
T 1i84_S 864 EELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.09 E-value=79 Score=27.06 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhH
Q 012634 3 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 47 (459)
Q Consensus 3 eeei~~LRk~Ladas~KE~QilnEKyvLErRiA~mRmAfDqqQqd 47 (459)
++||..||+.|-...+.=-.+.+-|..||..|+++.--|+.+-.+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999988777765567788999999999998877765443
No 22
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=23.81 E-value=1.9e+02 Score=22.89 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=24.8
Q ss_pred cCCCceeEecCCCcceEEEEecCCceeeeecC
Q 012634 400 FPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 431 (459)
Q Consensus 400 fs~~~~IkIp~G~~~qfvi~~sdG~e~~Lr~~ 431 (459)
|+| ..|++|.|.+-.|.++..|+.-|.+...
T Consensus 35 f~p-~~i~v~~G~~V~~~~~n~d~~~H~~~i~ 65 (112)
T 1iby_A 35 NEP-ETLVVKKGDAVKVVVENKSPISEGFSID 65 (112)
T ss_dssp EES-CEEEEETTCEEEEEEEECSSSCEEEEEG
T ss_pred EcC-CEEEEeCCCEEEEEEEECCCCeEEEEEc
Confidence 565 4688999999999999988777877754
No 23
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 1wfr_A
Probab=22.66 E-value=44 Score=28.40 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=31.9
Q ss_pred CCCcccceeecccCCCcceeecccccCCcccceeeEEEEcccCceeeecCC--CC-Cceeeecccc
Q 012634 247 GPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA--TN-PEYVVTADDV 309 (459)
Q Consensus 247 lp~i~gl~I~Gda~pG~~L~acG~~~ngtt~C~FqWvRhledGt~~~IegA--~~-p~Y~vTADDv 309 (459)
+-|+-.+.|+|++ .||++- .-.|.=.|++|.+.+.+.. .. |+|++|+++-
T Consensus 29 ~~~~~~~~i~~~p-------~~g~~~------~~~~~l~l~~G~~~~~~~~~~~~~~d~tl~~~~e 81 (130)
T 2cx7_A 29 WEGSLALAVRPDP-------KAGFPK------GVAVVLDLWHGACRGAKAVEGEAEADFVIEADLA 81 (130)
T ss_dssp CEEEEEEEECCBG-------GGTBTT------CEEEEEEEETTEEEEEEEEESCCCCSEEEEECHH
T ss_pred CcceEEEEEecCc-------ccCCCC------CceEEEEEeCCEEEEccccCCCCCCCEEEEEcHH
Confidence 3456677888876 225431 1348888999988655522 23 8888888763
No 24
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.87 E-value=4.9e+02 Score=27.23 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhhhc
Q 012634 113 LYDQLQSQIRTSYDRIR 129 (459)
Q Consensus 113 L~~~Lq~kl~~~e~klk 129 (459)
++.+|+.||..++.++.
T Consensus 176 ~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 176 VIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666666554
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.41 E-value=2.9e+02 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=21.5
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 012634 102 NASAISNTVKHLYDQLQSQIRTSYDRIRD 130 (459)
Q Consensus 102 dAqSIvsnvKvL~~~Lq~kl~~~e~klke 130 (459)
+-+..|++++-.-+.|+.++..++..+.+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588888888888888888777754443
Done!