BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012635
         (459 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
          Length = 479

 Score = 32.7 bits (73), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFMK 268
           D+T SR+   I+  +A +G +K  ++ HSMG  + + ++ 
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVN 147


>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
 pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
          Length = 484

 Score = 32.3 bits (72), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFMK 268
           D+T SR+   I+  +A +G +K  ++ HSMG  + + ++ 
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVN 147


>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
 pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
          Length = 475

 Score = 32.3 bits (72), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFMK 268
           D+T SR+   I+  +A +G +K  ++ HSMG  + + ++ 
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVN 147


>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
 pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
          Length = 475

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 24/40 (60%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFMK 268
           D+T SR+   I+  +A +G +K  ++ H+MG  + + ++ 
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHAMGTFFLVRYVN 147


>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
          Length = 302

 Score = 28.9 bits (63), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 399 SQRKHVNFGRI-------ISFGKDIAEAPSSQIDMIDFRVSLSVLPYSRKTSDFIMVTGI 451
           S R H N+  +        + GK ++ AP+  + ++D    L++LP +R+ ++ + +TG+
Sbjct: 192 SGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGL 251


>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
           Thaliana
          Length = 359

 Score = 28.5 bits (62), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 399 SQRKHVNFGRI-------ISFGKDIAEAPSSQIDMIDFRVSLSVLPYSRKTSDFIMVTGI 451
           S R H N+  +        + GK ++ AP+  + ++D    L++LP +R+ ++ + +TG+
Sbjct: 249 SGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGL 308


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,369,595
Number of Sequences: 62578
Number of extensions: 615555
Number of successful extensions: 1098
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 6
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)