BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012638
(459 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/472 (54%), Positives = 328/472 (69%), Gaps = 27/472 (5%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MGMGFRLNLKW P+ T S RL ++SV+G+E SF+S R SF S SED S ++D
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKSTSC---------------IGQD--------- 96
P K + CS QT ENDYS E ++ K C IG+D
Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
AS S F LL+ENLD+LE FADS+ +RLER+I+ QLG+LGALKLF LSR +KTS
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213
DL TE E + N + D H+ K++V S +K +RK K R E++ LPS+ +
Sbjct: 181 DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
++G +P++ + +R LNSR +RL A+NEAEMSKGV++VANLERI+ TLE+E G ASL+
Sbjct: 241 RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS 300
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+AAGV ++VL+Q L FGWYCR+EL++ST LVL++ARNYRG+G+ F D+LQAGN+GV
Sbjct: 301 NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGV 360
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
LQGAERFDHT+GY+FSTYVQYWIRKS+S +VARHARG+KIP LNR I +IQKARKAL
Sbjct: 361 LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYK 420
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
SHG+YP+D EIAK+TGLSLA+IRSA CLR+VGS DQ DC A L P
Sbjct: 421 SHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTP 472
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/441 (54%), Positives = 308/441 (69%), Gaps = 27/441 (6%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTS 91
++G+E SF+S R SF S SED S ++DP K + CS QT ENDYS E ++ K
Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141
Query: 92 C---------------IGQD---------ASSRSDFRLLMENLDVLESTFADSDALRLER 127
C IG+D AS S F LL+ENLD+LE FADS+ +RLER
Sbjct: 142 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201
Query: 128 EILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTE---EQKMNDSRDYHMGKILVPSK 184
+I+ QLG+LGALKLF LSR +KTS DL TE E + N + D H+ K++V S
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261
Query: 185 RKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAE 244
+K +RK K R E++ LPS+ +++G +P++ + +R LNSR +RL A+NEAE
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MSKGV++VANLERI+ TLE+E G ASL+ WA+AAGV ++VL+Q L FGWYCR+EL++ST
Sbjct: 322 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 381
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LVL++ARNYRG+G+ F D+LQAGN+GVLQGAERFDHT+GY+FSTYVQYWIRKS+S +V
Sbjct: 382 HSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLV 441
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
ARHARG+KIP LNR I +IQKARKAL SHG+YP+D EIAK+TGLSLA+IRSA CLR+
Sbjct: 442 ARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRV 501
Query: 425 VGSIDQKIGDCLNAKYLNIPP 445
VGS DQ DC A L P
Sbjct: 502 VGSTDQSFQDCWGATILEFTP 522
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 251/486 (51%), Positives = 331/486 (68%), Gaps = 35/486 (7%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG+GFRL KW SP+QSH T S+ SS S RG E S N ARLSFLS +SE+ +
Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS--------TSCIGQD--------ASSRSDFR 104
K++ CS Q VEND + E ++ + +G D ++S + R
Sbjct: 61 SFKSFACSSA-AQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLR 119
Query: 105 --------LLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
L++NLD LE AD DAL+LER+IL QLG+LGAL+ FN+ LSR ++TSNVL
Sbjct: 120 ERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVL 179
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARV-SEESIETSLLSLPSEA 212
DLS V TE E K + GK +V + +K +RK + R S+ +T+ LSLPS+
Sbjct: 180 DLSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKT 239
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
+Q L +PT +R +S RR IARNEA+M++GV+V ++LERI+TTLE+E+G+ SL
Sbjct: 240 VQNNLPKPTF--VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSL 297
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+CWA+A G+ ++VL+Q L FGWYCR+ELIK+T LVL++ARNYRG+GI DL+QAGN+G
Sbjct: 298 SCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLG 357
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+LQGAERFD TRGY+FSTYVQYWIRKS+ K+V RHARGI+IP L+R I+KIQKARKAL+
Sbjct: 358 LLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALS 417
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPPFFFPSFA 452
NSHG+YP+D E+AK+TGLSLA+I SA +CLR+V S+DQKIG+ AKY F P +
Sbjct: 418 NSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSE----FIPDMS 473
Query: 453 IWEWEE 458
I EE
Sbjct: 474 IQNPEE 479
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 261/485 (53%), Positives = 343/485 (70%), Gaps = 32/485 (6%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTS-VRGREGSFNSARLSFLSTISEDSASYFQ 59
MG GFRLNLK P S + S+S VRGRE + +RLSFLS ISE+ +
Sbjct: 1 MGFGFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHR 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETE--------------------EIRQKSTSCIGQDASS 99
DP+K Y S+ QTVEN++S+ E E+ K + ++
Sbjct: 61 DPLKTYAYSYA-VQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPSSTK 119
Query: 100 R--SDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLD 157
S F LL+ENL++LE +FADSDA +LE +IL QLGKLGALKLFN+ L+R ++T+NVL+
Sbjct: 120 ERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLE 179
Query: 158 LSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS-EESIETSLLSLPSEAL 213
+SDVHTE E +N + + K++V + +K +RK + R S + ++ L LPS +
Sbjct: 180 VSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPI 239
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
Q G ++PT+ S ++A S+ RRL IARNEAEM++G++V+A+LE+I+TTLE+E+ + SL+
Sbjct: 240 QSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLS 299
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
CWA+AAG+ +VL+Q L+FGWYCR+ELIKSTR LVL+ ARNYRG GI DLLQAGN+GV
Sbjct: 300 CWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGV 359
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
L+GAERFDHTRGY+FSTYVQYWIRKS+SK+V+R ARGI+IPC L+R I +IQKARKALT
Sbjct: 360 LEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTT 419
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPPFFFPSFAI 453
S+GKYP+D EIAKYTGLSLA+I SAS CLR+VGSIDQKIG+ LNAKYL F P ++
Sbjct: 420 SNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLE----FLPDTSV 475
Query: 454 WEWEE 458
EE
Sbjct: 476 QSPEE 480
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/464 (49%), Positives = 314/464 (67%), Gaps = 23/464 (4%)
Query: 1 MGMGFRLNL-KWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQ 59
MG G +LN+ + V P FTT+S STS RG+E F SARLS L+ ++S + +
Sbjct: 1 MGFGCKLNMMRCVLPSLRSPFTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRK 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETEE-IRQKSTSCIGQDASSRSD---------------- 102
D ++ + S TVENDYS E I ++S + D SD
Sbjct: 61 DTLRPHAGSSSVPLTVENDYSNLETTISKRSCKDLISDTEVLSDRDVSVYVRSVQSCSAS 120
Query: 103 -FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LM N+++LE+ +DS+ L+LE++IL QLG+LGAL+LF++ LSRI+ S DL +
Sbjct: 121 HFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSRIIDMS---DLPGL 177
Query: 162 HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPT 221
TE+ K N +D + K LV SKRK +RKL+ R + S + + SE+ E
Sbjct: 178 ITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQAST-SKRCACKSESSIESSIHHV 236
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ +A + +RGRR IA+NEAEMS+G++VVA LE++K TLEKE+GKA SLNCWA+AAG+
Sbjct: 237 VSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGI 296
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E+VL+ L FGWYCR+EL+KS R LVL+L+R YRGLG+ DL+QAGN+G+LQGAERFD
Sbjct: 297 DEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFD 356
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
HTRGY+FSTYVQYWIRK++S++V+RH RGIK+P L+ I+++QKARK L S GK+P+D
Sbjct: 357 HTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDD 416
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+E++K TGLSL +I+SA CLRIVGS+DQK+G +N KYL P
Sbjct: 417 VEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTP 460
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 231/473 (48%), Positives = 314/473 (66%), Gaps = 41/473 (8%)
Query: 1 MGMGFRLN--LKWVSPVQS-HFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASY 57
+G GF LN L++ + + H FT S LS +S RE FN RLSF ST E+ +
Sbjct: 3 LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62
Query: 58 FQDPVKAYTCSFVNTQTVENDYSETEEIR----QKSTSCIGQ----------DASSRSD- 102
+D + + S +T+END EE + ++S S + + + S+ S
Sbjct: 63 QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGEVSTVSKK 122
Query: 103 --------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSN 154
FRLLMENL VLE TF DS+ALRLE+ I+ QLGKLGAL+LFN LSR + TS
Sbjct: 123 FESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLGTSL 182
Query: 155 VLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSL--LSLPSEA 212
V + +D K++D +D K++V S +K + K + R E + T++ SL +A
Sbjct: 183 VSNYAD------KVDDYKD----KVVVQSSKKKENKTRRKR---EFVSTAVSSQSLTLKA 229
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
QE L + +RA N++ +R+ +A+ EAEMSKGV+V+A LE+I+T +E+++ + ASL
Sbjct: 230 NQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASL 289
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+ WA+A+GV E+VL++ L G+YC++ELI+STR LVL+LAR YRG+GI DLLQAG VG
Sbjct: 290 STWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVG 349
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
VLQGAERFD TRGYKFSTYVQYWIRKSI ++VAR+ARGI IP LNR I++IQKARKA+
Sbjct: 350 VLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMK 409
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
++H K P+D EIAK TGLSL +I+SAS CLRIV SIDQK+GD L +Y+ + P
Sbjct: 410 STHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELLP 462
>gi|449461399|ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/472 (46%), Positives = 300/472 (63%), Gaps = 36/472 (7%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG FR NL+W +Q+H S +LS + +GRE +FNS RLSF S+I E+ S ++
Sbjct: 1 MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS------------------------TSCIGQD 96
+K YTC QT ND EEI S +SC
Sbjct: 61 TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
S F +LMENLDVLE TF +S L LER+I+ QL KLGAL+ FN+ LSR +KTS+
Sbjct: 121 TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180
Query: 157 DLSDV-------HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLP 209
D S + H QK ND D + V S +K R+ R + + + + L
Sbjct: 181 DSSGLPIEGGEDHNVNQKTNDQND----NVTVYSAKKAGRRSVKKRAMDNADKIASRLLT 236
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
+ A++E + + T+FS +++ NS RRL +A NEAEMS GV+VVANLERI+ TLEKESG+
Sbjct: 237 TRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRI 296
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
AS++CWA+AA V + L++ L FG +CR+EL++ST LV+FLA+ YR G+P DL+QAG
Sbjct: 297 ASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAG 356
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
+GVLQG ERFD RG++ STY+QYWIRKS+S++VAR++RGI+IP L + I++IQKARK
Sbjct: 357 ALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARK 416
Query: 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441
L +S +Y +D +IA+ TGL LA++R AS CL++VGS DQK+GD +N KY+
Sbjct: 417 VLNHSGRRYSDD-DIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYM 467
>gi|7363220|emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/417 (49%), Positives = 281/417 (67%), Gaps = 26/417 (6%)
Query: 41 SARLSFLSTISEDSASYFQD-PVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASS 99
++R SFLS+I E S S+ +D P+KA C+ + T EN Y E ++ ++ C+ D S
Sbjct: 76 ASRWSFLSSIKEGSRSHRRDHPLKACGCA---SATAENVYVELKDPKENIGMCLVGDQMS 132
Query: 100 RSD----------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRI 149
++ + LL +NL LE TF D+LR+ER+I+ Q+ KLGA +LFN+ LSR
Sbjct: 133 SAEKAHLSRSMLQYNLLGKNLLALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSRS 192
Query: 150 VKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLP 209
+S L D T E + +++ K V S RK ++K +T + S S
Sbjct: 193 RVSSATSCLPDTGTPELVDDTTQEQ---KTFVHSTRKLRKKARTGNGDQGSSTIS----- 244
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
S EG+ P + + R +R I+RNEAEMS+GV++VA++ERI+T LE+E+GK
Sbjct: 245 SRTTWEGIDVPRV---RKPSKYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEETGKV 301
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
AS++CWA+AAG+++++L +L FGWYCR+EL+KSTR LVLFLARNYRGLGI DL+QAG
Sbjct: 302 ASMSCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAG 361
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
VGVLQGAERFDHTRGYKFSTYV+YWIRKS+S MV+RHARG+ IP + R +S+IQKARK
Sbjct: 362 YVGVLQGAERFDHTRGYKFSTYVRYWIRKSMSTMVSRHARGVHIPASIIRTMSQIQKARK 421
Query: 390 ALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
L S G KYP D EI+K TG SL +IR+A++CL++VGSID+K+GDC ++L P
Sbjct: 422 TLKTSQGIKYPADEEISKLTGYSLKKIRAANQCLKVVGSIDKKVGDCFTTRFLEFTP 478
>gi|312281919|dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]
Length = 562
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 202/398 (50%), Positives = 271/398 (68%), Gaps = 18/398 (4%)
Query: 57 YFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDAS------SRS--DFRLLME 108
Y + P+KA C+ T EN Y E ++ + KS + Q +S SRS + LL +
Sbjct: 85 YQKYPLKACGCASATPCTAENVYVELKDPK-KSIGVVEQMSSAEKANLSRSMLQYNLLGK 143
Query: 109 NLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKM 168
NL LE TF D+LR+ER+I+ Q+GKLGA +LF + LSR +S LSD TE
Sbjct: 144 NLLALEETFVSLDSLRMERDIMLQMGKLGATELFKTCLSRSRGSSVTSCLSDTGTELVVA 203
Query: 169 NDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERA 228
+ + + VPS+RK K+K + + +S + L + S + P + ++
Sbjct: 204 TEEQ-----QTFVPSRRKLKKKARRSSLSTGKGDQGSLLIGSRTTWNDIDAPRL---RKS 255
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
R +R I+RNEAEMS G ++VA++ERI+T LE+ESGK AS++CWA+AAG++E +L +
Sbjct: 256 SKYRKKRERISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMNEILLMR 315
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
+L +GWYCR+EL+KSTR LVLFL+RNYRGLGI DL+QAGNVGVLQGAERFDHTRGYKF
Sbjct: 316 NLHYGWYCRDELLKSTRSLVLFLSRNYRGLGIAHEDLIQAGNVGVLQGAERFDHTRGYKF 375
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKY 407
STYVQYWIRKS+S MV+RHARG+ IP + R +S+IQKARK L SHG KYP D EI+K
Sbjct: 376 STYVQYWIRKSMSMMVSRHARGVYIPSSVIRTMSQIQKARKTLKTSHGIKYPADEEISKE 435
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
TG SL +IR+A++CL++VGSID+K+GDC K+L P
Sbjct: 436 TGYSLKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTP 473
>gi|297820128|ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 211/438 (48%), Positives = 292/438 (66%), Gaps = 17/438 (3%)
Query: 14 PVQSHFFTTSSCRLSSTS--VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVN 71
P+ H+ + C +S VR SF + R SFLS++ E+S Y +DP+KA C+
Sbjct: 53 PLIKHWLSLLRCDQTSFPIFVRIPVSSFVATRWSFLSSVKEESRIYQKDPLKA--CASSA 110
Query: 72 TQTVENDYSETEEIRQK-STSCIGQDASSRS--DFRLLMENLDVLESTFADSDALRLERE 128
T EN + E ++ ++ + SSRS + LL +NL LE TF D+ R+ER+
Sbjct: 111 PYTAENVFLELKDPKENIGVGSAEKSCSSRSMLQYNLLAKNLLALEETFVALDSARMERD 170
Query: 129 ILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGK 188
I+ Q+GKLGA LF + LSR +S LSD TE ++ ++ V S+RK K
Sbjct: 171 IMLQMGKLGAADLFKTCLSRSRGSSVASCLSDT-TELVGTTPNQ-----QVFVSSRRKLK 224
Query: 189 RKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKG 248
+K + + V+ E+ + L + + P + R R +R I++NEAEMS G
Sbjct: 225 KKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRV---RRPPKYRKKRERISKNEAEMSTG 281
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
V++VA++ERI+T LE+ESGK ASL+CWA+AAG++E++L ++L +GWYCR+EL+KSTR LV
Sbjct: 282 VKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLV 341
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
LFLARNYRGLGI DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHA
Sbjct: 342 LFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHA 401
Query: 369 RGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
RG+ IP + R I++IQKARK L SHG KYP D +I+K T LS+ +IR+A++CL++VGS
Sbjct: 402 RGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGS 461
Query: 428 IDQKIGDCLNAKYLNIPP 445
I++K+GDC + K+L P
Sbjct: 462 IEKKVGDCFSTKFLEFTP 479
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 209/423 (49%), Positives = 283/423 (66%), Gaps = 22/423 (5%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRGLGI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHE 359
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHARG+ IP + R I+
Sbjct: 360 DLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINH 419
Query: 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLN 442
IQKARK L SHG KY D EIAK TG S+ +IR+A++CL++VGSID+K+GDC K+L
Sbjct: 420 IQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLE 479
Query: 443 IPP 445
P
Sbjct: 480 FTP 482
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/423 (49%), Positives = 283/423 (66%), Gaps = 22/423 (5%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRG+GI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHE 359
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHARG+ IP + R I+
Sbjct: 360 DLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINH 419
Query: 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLN 442
IQKARK L SHG KY D EIAK TG S+ +IR+A++CL++VGSID+K+GDC K+L
Sbjct: 420 IQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLE 479
Query: 443 IPP 445
P
Sbjct: 480 FTP 482
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 217/455 (47%), Positives = 291/455 (63%), Gaps = 26/455 (5%)
Query: 1 MGM--GFRLNLKW-VSPVQSH----FFTTSSCRLSSTS-VRGREGSFNSARLSFLSTISE 52
MG+ GFRLN K S V H FF+ S LSS+S GRE FN RLS LST+ E
Sbjct: 1 MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSSAGGRETLFNPVRLSLLSTVYE 60
Query: 53 DSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQ-----KSTSCIGQ--DAS----SRS 101
+ + +D K + S + E D + E+ + +S S + + D S S
Sbjct: 61 EGETLQKDFRKTFAFSSA-LEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFEES 119
Query: 102 DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LLMENL VLE TFADS+ALRLE+ I+ QL KLGAL+LFN L+ TS + + +
Sbjct: 120 HFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCTHK 179
Query: 162 ---HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEG-L 217
EE K N D + GK++V S ++ ++ + + SI S SLP + QE L
Sbjct: 180 VLEQVEENKRNHKVDDYTGKVIVHSSKR--KENRRRKRGSVSIAPSSRSLPLDDNQEDPL 237
Query: 218 KQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQ 277
+ +RA N++ +R IA+ E EMSKGV+V+A LE+I+T +E+++ + SL+ WA+
Sbjct: 238 RSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAE 297
Query: 278 AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
+GV E+VL+Q L G+YCR+ELI+STR LVL+ AR YRG+GI DLLQ G +GVLQGA
Sbjct: 298 TSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGA 357
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
ERFD T+GY+FSTYVQYWIRKS+S+MVA++ARGI +P +N+ IS+IQKARK L N+ K
Sbjct: 358 ERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMK 417
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI 432
YP D+EIAK TGLSL +I SAS CLR V S+ + I
Sbjct: 418 YPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGI 452
>gi|22135904|gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/202 (67%), Positives = 168/202 (83%), Gaps = 1/202 (0%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MS GV++VA++ERI+T LE+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KST
Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKST 60
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
R LVLFLARNYRGLGI DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV
Sbjct: 61 RSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMV 120
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLR 423
+RHARG+ IP + R I+ IQKARK L SHG KY D EIAK TG S+ +IR+A++CL+
Sbjct: 121 SRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLK 180
Query: 424 IVGSIDQKIGDCLNAKYLNIPP 445
+VGSID+K+GDC K+L P
Sbjct: 181 VVGSIDKKVGDCFTTKFLEFTP 202
>gi|357128317|ref|XP_003565820.1| PREDICTED: uncharacterized protein LOC100824063 [Brachypodium
distachyon]
Length = 989
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 215/358 (60%), Gaps = 19/358 (5%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR--IVKTSNV 155
SS ++ LLM+N+ LES+ A D + LER IL + +LGAL+LFN+ SR + +TS+
Sbjct: 551 SSSLEYSLLMQNIHALESSLAGQDLVLLERNILVHIEQLGALQLFNASRSRAIVTQTSHE 610
Query: 156 LDLS--------DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLS 207
D + D T + +D +++V S + +RKLK R E+ + +
Sbjct: 611 SDFALPGSVAEFDPVTPLGEESD-------RLIVRSGKSQERKLKRIRSLEKVSGVCVKA 663
Query: 208 LPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESG 267
+ + + F AE N GRR +I R ++ + ++ ANLE+I+ + KE G
Sbjct: 664 SSRKQKKSCKSSSSQFIAEWK-NYPGRRRSIVREQSALLMTIKECANLEKIRENMVKE-G 721
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ S + WA+AAGV E VLK L G++CRE L+ +T LV ++AR Y G+G F DLLQ
Sbjct: 722 QEVSYDRWAKAAGVDEAVLKSRLQAGYFCRERLLVTTEWLVKYIARTYTGMGTAFEDLLQ 781
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387
AG +GVL GA+RFD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++A
Sbjct: 782 AGKMGVLNGADRFDSNKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMESIIRKVKEA 841
Query: 388 RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
++A+ +S G+ P D EIA + G+S++ +R A +C R V S+ +IG NAK++ + P
Sbjct: 842 KRAIRSSTGRNPIDAEIATFVGVSVSNVRLARKCSRRVVSLYMEIGTGQNAKFMEVTP 899
>gi|218197356|gb|EEC79783.1| hypothetical protein OsI_21197 [Oryza sativa Indica Group]
Length = 557
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 215/359 (59%), Gaps = 25/359 (6%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYES 183
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
N++ L ++ EEQ + ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGNIIKLDPEIPLEEQNV---------VVIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 350 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 409
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++ + P
Sbjct: 410 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFVEVTP 468
>gi|47777365|gb|AAT37999.1| putative RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 882
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 215/359 (59%), Gaps = 25/359 (6%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 449 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 508
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 509 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 559
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ ++ + Q F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 560 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 614
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 615 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 674
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 675 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 734
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++ + P
Sbjct: 735 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFVEVTP 793
>gi|49328110|gb|AAT58808.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 799
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 216/359 (60%), Gaps = 25/359 (6%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 366 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 425
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S +
Sbjct: 426 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKG---SRV 473
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 474 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 531
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 532 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 591
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 592 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 651
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++ + P
Sbjct: 652 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFVEVTP 710
>gi|297605001|ref|NP_001056480.2| Os05g0589200 [Oryza sativa Japonica Group]
gi|255676623|dbj|BAF18394.2| Os05g0589200, partial [Oryza sativa Japonica Group]
Length = 464
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 214/355 (60%), Gaps = 25/355 (7%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 183
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P ++ I K+++
Sbjct: 350 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVRE 409
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441
AR+A+ + G+ P D EIA G+S+A +R A +C R V S+ +IG NAK++
Sbjct: 410 ARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFV 464
>gi|222632746|gb|EEE64878.1| hypothetical protein OsJ_19735 [Oryza sativa Japonica Group]
Length = 1012
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 216/383 (56%), Gaps = 49/383 (12%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 555 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 614
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 615 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 665
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEM---------SKGVQV------ 251
+ ++ + Q F AE N GRR +I R ++ + GVQ
Sbjct: 666 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKRRSADAGVQWKASAAE 721
Query: 252 ---------VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
ANLE+I+ L K+ G S WA+AAG+ E +L+ L G+ CRE L+
Sbjct: 722 ERRRASAAECANLEKIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLV 780
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+T LV ++A+ Y G+G F DLLQAG +GVL GAE+FD +G KFSTYV+YWIRK++
Sbjct: 781 TTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLA 840
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422
++A ++ I++P ++ I K+++AR+A+ + G+ P D EIA G+S+A +R A +C
Sbjct: 841 LLAENSGVIQLPARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCS 900
Query: 423 RIVGSIDQKIGDCLNAKYLNIPP 445
R V S+ +IG NAK++ + P
Sbjct: 901 RRVVSLYTEIGVGQNAKFVEVTP 923
>gi|162463525|ref|NP_001105185.1| sigma factor protein [Zea mays]
gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays]
Length = 568
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 143/464 (30%), Positives = 237/464 (51%), Gaps = 46/464 (9%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSR-DYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPT 221
++ + D M ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQM--VVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASS 257
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 258 SQFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGV 316
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQAG +GVL GAE+FD
Sbjct: 317 DEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFD 376
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+G +FSTYV+YWIRK + ++A ++ +P ++ + K+++AR+ + G+ P D
Sbjct: 377 SRKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARMESIMRKVKEARRGIRYRQGRNPSD 436
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
E+A G+S+A +R A +C R S+ ++ + K+ + P
Sbjct: 437 SEVAAAVGVSVANVRLARKCSRRAVSLYSEVAIGQDVKFAEVIP 480
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 165/270 (61%), Gaps = 13/270 (4%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLPS--------EALQE-GLKQPTIFSAERAL 229
I V SKR+ +RK + R +E+++ TS+LS S ++QE P + RA
Sbjct: 220 ITVKSKRQTERKARRTRAAEKTV-TSVLSFKSGSSSRKKRNSVQEVDYSDPLRYL--RAT 276
Query: 230 NSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQH 289
+ R LT A E E+S+G+Q + LER++ L + G + WA AAGV++R L++
Sbjct: 277 TNTSRLLT-ATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKR 335
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
L +G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFS
Sbjct: 336 LNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 395
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WI++++ K ++ +R I++P + ++++ARK L + +G++P+D EIA+ G
Sbjct: 396 TYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAG 455
Query: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAK 439
LS+ + + + S++QKIG N K
Sbjct: 456 LSMKRLAAVLMTPKAPRSLEQKIGINQNLK 485
>gi|242089059|ref|XP_002440362.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
gi|241945647|gb|EES18792.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
Length = 529
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 13/353 (3%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSH----------LSRIVKT 152
+ LLM+NL+ LE++ A D LE +IL + +LGAL+ F++ L+
Sbjct: 83 YGLLMQNLEELETSLAGKDLKILENDILAHIQQLGALRSFDASTAVGATLLDTLTHDQPD 142
Query: 153 SNVLD--LSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
S++LD + + E +++ ++V S + +RKLK R SE+ S+ P
Sbjct: 143 SSLLDQQIIEFDPETTPLDEEEQEDSQVVVVRSGKSEERKLKRVRASEKGSRISVKVNPR 202
Query: 211 EALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
+ K + + GRR I R ++ + ++ A+LE+I+ + KE G+
Sbjct: 203 RPKKSSRKASSSQFISEWKSHPGRRRIIVREQSALLATIKECASLEKIREKMVKE-GQEV 261
Query: 271 SLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGN 330
S + WA+AAG+ E L L G+ CRE L+ +T LV +AR+Y G+G DLLQAG
Sbjct: 262 SYHRWAEAAGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTGMGTALDDLLQAGK 321
Query: 331 VGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKA 390
+GVL GAE+FD +G +FSTYV+YWIRK + ++A ++ +P ++ + K+++AR+
Sbjct: 322 MGVLDGAEKFDTRKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARMESIMRKVKEARRG 381
Query: 391 LTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+ S G+ P D E+A G+S+A +R A +C R S+ +IG +AK+ +
Sbjct: 382 IRYSEGRNPSDSEVAAAVGVSVANVRLARKCSRRPVSLYSEIGIGQHAKFAEV 434
>gi|413946740|gb|AFW79389.1| sigma factor protein [Zea mays]
Length = 568
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/463 (30%), Positives = 236/463 (50%), Gaps = 44/463 (9%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPTI 222
++ ++ ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQ-VVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASSS 258
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 259 QFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVD 317
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQAG +GVL GAE+FD
Sbjct: 318 EAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFDS 377
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+G +FSTYV+YWIRK + ++A ++ +P ++ + K+++AR+ + G+ P D
Sbjct: 378 RKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARMESIMRKVKEARRGIRYRQGRNPSDS 437
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
E+A G+S+A +R A +C R S+ ++ + K+ + P
Sbjct: 438 EVAAAVGVSVANVRLARKCSRRAVSLYSEVAIGQDVKFAEVIP 480
>gi|223975681|gb|ACN32028.1| unknown [Zea mays]
gi|413946741|gb|AFW79390.1| hypothetical protein ZEAMMB73_416951 [Zea mays]
Length = 565
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 227/433 (52%), Gaps = 37/433 (8%)
Query: 33 RGREGSFNSARLSFLSTISED---SASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKS 89
R R+G+ A S + I+ED +A+ + V A + + ND + +R ++
Sbjct: 62 RSRDGATALASSSGVLQIAEDKSSAANLTKHKVSA-------ERKLLNDALDRTGVRYET 114
Query: 90 TSCIGQDASSRSD---------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALK 140
S + ++ SS D +RLLM+NL+ LE++ D LE +IL+QLG LG+
Sbjct: 115 ESWMDEETSSWMDRDLTDSDLRYRLLMQNLEELETSLVGKD---LEMDILEQLGALGS-- 169
Query: 141 LFNSHLSRIVKT------SNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTA 194
FN+ ++R V ++LD D E ++ ++ ++V S + +RKL+
Sbjct: 170 -FNASVARGVSALHGRPDGSLLD--DPEPETTPLDAGQEDSQ-VVVVRSGKSQERKLRRM 225
Query: 195 RVS--EESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVV 252
R S E+ TS+ P ++ K + + G+R I R ++ + ++
Sbjct: 226 RASSDEKGSRTSVKVNPPRRPKKSRKASSSQFISEWKSHPGQRRIIVREQSALLSTIKEC 285
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
A LE+I+ + KE G+ S + WA+AAGV E L L G+ CR+ L+ +T LV +A
Sbjct: 286 AGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIA 344
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
R Y G+G DLLQAG +GVL GAE+FD +G +FSTYV+YWIRK + ++A ++
Sbjct: 345 RTYTGMGTALDDLLQAGKMGVLDGAEKFDSRKGCRFSTYVKYWIRKGMLALLAENSGVTL 404
Query: 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI 432
+P ++ + K+++AR+ + G+ P D E+A G+S+A +R A +C R S+ ++
Sbjct: 405 LPARMESIMRKVKEARRGIRYRQGRNPSDSEVAAAVGVSVANVRLARKCSRRAVSLYSEV 464
Query: 433 GDCLNAKYLNIPP 445
+ K+ + P
Sbjct: 465 AIGQDVKFAEVIP 477
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 159/271 (58%), Gaps = 15/271 (5%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAE----------RA 228
+ V S R+ +RK + A+ +E + +PS K+ + + E R
Sbjct: 210 LAVRSTRQTERKARRAK----GLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRM 265
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
S + LT+ R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q
Sbjct: 266 TTSSSKLLTV-REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQ 324
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
+ G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KF
Sbjct: 325 RIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKF 384
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 444
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAK 439
GLS+ + + + S+DQKIG N K
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGMNQNLK 475
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 133/205 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ TGLS+
Sbjct: 391 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR 450
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQKIG N K
Sbjct: 451 LMAVLLSPKPPRSLDQKIGMNQNLK 475
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 133/205 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L AR E ++S+G+Q + LER++ L + G + + WA AAGV ++ L++ + G
Sbjct: 271 KLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++ +IKS LV+ +A+NY+G G+ F DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 QCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + GK P++ E+A+ TGLS+
Sbjct: 391 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSMKR 450
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQKIG LN K
Sbjct: 451 LMAVLLSPKPPRSLDQKIGINLNLK 475
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 133/205 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 273 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 332
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 333 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 392
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ TGLS+
Sbjct: 393 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR 452
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+D+KIG N K
Sbjct: 453 LMAVLLSPKPPRSLDRKIGMNQNLK 477
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 132/205 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL + E E+S G+Q + LE++ L+ GK+ S WA AAG+ +R L++ L G
Sbjct: 276 RLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGT 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 336 FCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 395
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + +GK P + E+A+ TGLS+
Sbjct: 396 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKR 455
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQKIG +N K
Sbjct: 456 LTAVLMTPKAPRSLDQKIGFNMNLK 480
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 132/205 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + G+ + WA AAGV ++ L++ + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + GK+P++ EIA+ TGLS+
Sbjct: 391 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR 450
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQKIG N K
Sbjct: 451 LMAVLLSPKPPRSLDQKIGMNQNLK 475
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 132/199 (66%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L AR E ++S +Q + LE IK+ LE+E G+ A++ W++A G+ + + L G
Sbjct: 275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGR 334
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +++++ S LV+ +A+NY+G G+ DL+Q G++G+++GAE+FD T+G+KFSTY +
Sbjct: 335 FAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHW 394
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+++++ +A +R I++P L IS+I KA++ L HG+ + E+A+ GL++ +
Sbjct: 395 WIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEK 454
Query: 415 IRSASECLRIVGSIDQKIG 433
++S + + GS+++ IG
Sbjct: 455 LKSVVKSAKAPGSMERPIG 473
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 131/209 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 196 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 255
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++I LV+ +A+NY+ G+ DL+QAG++G+++ AE+FD++RG+KFSTY +
Sbjct: 256 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 315
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+SI+K + +R I++P + +++I+ A + L H + P E+A+ G+S+
Sbjct: 316 WIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTR 375
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+R + C R+ S+D+ +G ++ K+ I
Sbjct: 376 LRHVTRCSRVPTSLDRCVGKDMDEKFSEI 404
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 131/209 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 293 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 352
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++I LV+ +A+NY+ G+ DL+QAG++G+++ AE+FD++RG+KFSTY +
Sbjct: 353 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 412
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+SI+K + +R I++P + +++I+ A + L H + P E+A+ G+S+
Sbjct: 413 WIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTR 472
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+R + C R+ S+D+ +G ++ K+ I
Sbjct: 473 LRHVTRCSRVPTSLDRCVGKDMDEKFSEI 501
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 157/267 (58%), Gaps = 7/267 (2%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQE--GLKQPTIFSAE----RALNSR 232
I V S+R+ +RK + AR E++ + + P ++ G Q +S R S
Sbjct: 209 IAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTST 268
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R LT A E E+S +Q + LER++ L + G + WA AAGV +R L++ +
Sbjct: 269 SRLLT-ASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINH 327
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY
Sbjct: 328 GTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 387
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K ++ +R I++P + ++++ARK L + +G++P+D E+A+ GLS+
Sbjct: 388 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSM 447
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQKIG ++ K
Sbjct: 448 KRLSAVLLTPKAPRSLDQKIGMNMDLK 474
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 166/293 (56%), Gaps = 18/293 (6%)
Query: 157 DLSDVHTE----EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIE--TSLLSLPS 210
DL H E +++++DS I V S+R+ +RK K R +E++ TS S
Sbjct: 179 DLEPSHEELERLQEQLSDS-------IAVRSRRQTERKAKRVRATEKATTNFTSFKPGSS 231
Query: 211 EALQEGLKQPTIFSAE----RALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ Q +S R S R LT E ++S G+Q + LE+I+ L +
Sbjct: 232 SRRKRVSMQEVDYSDPLRYLRTTTSASRLLT-PTEEIKLSAGIQDLLKLEKIQEDLAERF 290
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G + WA AGV ++ L++ L +G +C++++IKS LV+ +A+NY+G G+ DL+
Sbjct: 291 GSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLV 350
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQK 386
Q G G+++GAE+FD T+G+KFSTY +WI++++ K ++ +R I++P + ++++
Sbjct: 351 QEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 410
Query: 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAK 439
ARK L + +G+ P+D E+A+ TGLS+ + + + S++QKIG N K
Sbjct: 411 ARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLK 463
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 132/205 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 276 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 336 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 395
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + +G++P + E+A+ TGLS+
Sbjct: 396 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 455
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQKIG N K
Sbjct: 456 LNAVLLTPKAPRSLDQKIGINQNLK 480
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 132/205 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 279 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 338
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 339 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 398
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WI++++ K ++ +R I++P + ++++ARK L + +G++P + E+A+ TGLS+
Sbjct: 399 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 458
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQKIG N K
Sbjct: 459 LNAVLLTPKAPRSLDQKIGINQNLK 483
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 130/198 (65%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+S+G+Q + LERI+ L++ G S WA AAGV + L++ L +G C++++I
Sbjct: 275 EVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMI 334
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
KS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +WI++++
Sbjct: 335 KSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 394
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
K ++ +R I++P + ++++ARK L + +G++P+D E+A+ GLS+ + +
Sbjct: 395 KSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLT 454
Query: 422 LRIVGSIDQKIGDCLNAK 439
+ S+DQK+G ++ K
Sbjct: 455 PKAPRSLDQKMGFNMDLK 472
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 125/199 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L + E E+++G+Q + +E +K L ++ G+ +L WA+A G L+ + G
Sbjct: 316 KLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESRIKSGQ 375
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++ ++ S LV+ +A+ Y+G G+ DL+Q G++G+++GAE+FDHTRG+KFSTY +
Sbjct: 376 ACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFSTYAHW 435
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P + +S+I KA+ L HG+ P D E+A+ GLS+ +
Sbjct: 436 WIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELVGLSIEK 495
Query: 415 IRSASECLRIVGSIDQKIG 433
++ + R S++ +G
Sbjct: 496 LKMVIKSARSPKSMEFPVG 514
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 130/205 (63%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LERI+ L++ G + WA AA V + L++ L +
Sbjct: 265 RLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAI 324
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++G E+FD ++G+KFSTY +
Sbjct: 325 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHW 384
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+++ + ++ +R I++P + ++++ARK + +G++P+D E+A+ TGLS+
Sbjct: 385 WIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKR 444
Query: 415 IRSASECLRIVGSIDQKIGDCLNAK 439
+ + + S+DQK+G ++ K
Sbjct: 445 LSAVLLTPKAPRSLDQKMGFNMDLK 469
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 127/192 (66%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + S+G+Q + LE+++ L ++ G + WA AGV ++ L++ L +G +C+E++I
Sbjct: 280 EIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 339
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
KS LV+ +A+NY+G G+ DL+Q G G+++GAE++D ++G+KFSTY +WI++++
Sbjct: 340 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVR 399
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
K ++ +R I++P + K+++ARK L + +G+ P+D E+A+ TGLS+ + +
Sbjct: 400 KSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLT 459
Query: 422 LRIVGSIDQKIG 433
+ S++QK+G
Sbjct: 460 PKAPRSLEQKVG 471
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 135/220 (61%), Gaps = 10/220 (4%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
+L A E +S+ +Q + LE++K+ L++E G+ S+ W++A G+ + + +
Sbjct: 287 KLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFELRVKE 346
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y +++++ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD +G+KFSTY
Sbjct: 347 GRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKGFKFSTYA 406
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A +R I++P L IS+I KA+K L HG+ P D E+A+ G+S+
Sbjct: 407 HWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDEEVAELVGMSV 466
Query: 413 AEI-------RSASECLRIVG-SIDQKIGDCLNAKYLNIP 444
++ ++ S R++G DQ IG+ + K + P
Sbjct: 467 EKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESP 506
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 193 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 252
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 253 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 312
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 313 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 372
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S+ K+G C + Y I P
Sbjct: 373 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITP 404
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 39 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 98
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 99 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 158
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 159 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 218
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S+ K+G C + Y I P
Sbjct: 219 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITP 250
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 355
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 356 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 415
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S+ K+G C + Y I P
Sbjct: 416 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITP 447
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 120/185 (64%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
LER++ L + G + WA AAGV++R L++ L +G C++++IKS LV+ + +N
Sbjct: 7 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIXKN 66
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +WI++++ K ++ +R I++P
Sbjct: 67 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 126
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++++ARK L + +G++P+D EIA+ GLS+ + + + S++QKIG
Sbjct: 127 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 186
Query: 435 CLNAK 439
N K
Sbjct: 187 NQNLK 191
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
RRL A+ E E+S+G+Q LE I+ + +G + WA AAG E L++ L++
Sbjct: 233 ARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLSY 292
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 293 GIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYS 352
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TGL+
Sbjct: 353 HWWIKQAIRKSVLEQTQIIRLPTHMAEASSRVKECRRRLRRQLNRLPTNEEIASDTGLTT 412
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A R S+ K+G C + Y I P
Sbjct: 413 RRVEAAMSLPRYSVSLSGKVG-CTDVTYQEIMP 444
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 124/213 (58%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GWRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 355
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ R+ L + P + EIA TG+ L
Sbjct: 356 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPL 415
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S+ K+G C + Y I P
Sbjct: 416 RRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITP 447
>gi|357128311|ref|XP_003565817.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 251
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 103/150 (68%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE L+ +T LV ++AR Y G+G F DLLQAG +GVL GAERFD +G KFSTYV+YW
Sbjct: 13 ARERLLVTTEWLVKYIARTYTGMGTAFDDLLQAGKMGVLDGAERFDSEKGCKFSTYVKYW 72
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IRK++ ++A ++ I++P ++ I K+++A++ + +S G+ P D EIA + G+S++ +
Sbjct: 73 IRKAMLALLAENSGVIQLPARMESIIRKVKEAKRVIRSSMGRNPIDAEIATFIGVSVSNV 132
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
R A +C R V S+ +IG NAK++ + P
Sbjct: 133 RLARKCSRRVVSLYTEIGTGQNAKFMEVTP 162
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 123/199 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L A E +S+ +Q + LE+I+ L+++ G+ +L+ W+QA + + L+ + G
Sbjct: 282 KLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVKEGR 341
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++L+ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD GYKFSTY +
Sbjct: 342 SAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKFDPEMGYKFSTYATW 401
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+++++ +A +R I++P + IS+I KA+ ++ G+ P D E+A G+S+ +
Sbjct: 402 WIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPRDEEVAAMVGMSVEK 461
Query: 415 IRSASECLRIVGSIDQKIG 433
+ + R S+D+ IG
Sbjct: 462 LLFIVKSARPPTSMDRPIG 480
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 121/201 (60%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ F DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYS 354
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 355 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPI 414
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 415 KRVEAAVNLPKYSVSLDSKIG 435
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 127/202 (62%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRQLKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L ++G+ E+A GL+
Sbjct: 140 YWWIRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPELADELGLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVRDYLEKSRQPLSLDLRVGD 221
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 121/201 (60%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ F DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYS 354
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 355 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPI 414
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 415 KRVEAAVNLPKYSVSLDSKIG 435
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 127/202 (62%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRELKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L ++G+ E+A GL+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASIPELADELGLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVRDYLEKSRQPLSLDLRVGD 221
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 126/206 (61%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ LE+ + + WA+AAG+ + +
Sbjct: 75 LQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGMPLKDFR 134
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 135 RRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 194
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 195 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIATR 254
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 255 MEMTIEKLRFIAKSAQLPISLETPIG 280
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 121/213 (56%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 124 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 183
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 184 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 243
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 244 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTI 303
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S K+G C + Y I P
Sbjct: 304 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMP 335
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 121/213 (56%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 343
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 344 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTI 403
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S K+G C + Y I P
Sbjct: 404 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMP 435
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 122/213 (57%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + +G + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYS 343
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 344 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLRRELKRLPSNEEIAVDTGMTI 403
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S K+G C + Y I P
Sbjct: 404 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMP 435
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 121/213 (56%), Gaps = 1/213 (0%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 223 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 282
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 283 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 342
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI+++I K V + I++P + S++++ + L + P + EIA TG+++
Sbjct: 343 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTI 402
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ +A + S K+G C + Y I P
Sbjct: 403 RRVEAAMSLPKYSVSFTSKVG-CTDVTYQEIMP 434
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 118/201 (58%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG 460
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 118/201 (58%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG 460
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 118/201 (58%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 259 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 378
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 379 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 438
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 439 KRVEAAVNLPKYSVSLDSKIG 459
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 118/201 (58%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ ++ ++P + ++++ K L + P + EIA TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG 460
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 123/199 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L + + + WA+AAG+ + ++ L G
Sbjct: 78 RLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGR 137
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 138 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 197
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++ +
Sbjct: 198 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEK 257
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 258 LRFIAKSAQLPISLETPIG 276
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 123/199 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L + + + WA+AAG+ + ++ L G
Sbjct: 94 RLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 274 LRFIAKSAQLPISLETPIG 292
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L +E + N WA A G+ + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 274 LRFIAKSAQLPISLETPIG 292
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+SK V ++ +LE+ + + +E GK+ + + WAQ G + V L++H+ G +E
Sbjct: 296 EIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKER 355
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
++ + LV+ +A+ Y G+ DL+Q G++G+++G E+FD RG++FSTY +WIR+S
Sbjct: 356 MVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQS 415
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ +R I++P ++ IS I+K KAL G+ P + EI + G+ A+ R
Sbjct: 416 ITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESVGIDRAKYRLVM 475
Query: 420 ECLRIVGSIDQKIGDCLNAKYL 441
EC R + S++ + + +L
Sbjct: 476 ECSRNIVSLETPLRSGDDVHFL 497
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 128/220 (58%), Gaps = 2/220 (0%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 59 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDK 118
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WAQ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 119 EWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 178
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 179 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQ 238
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 239 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 278
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVDMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 203
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 204 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 263
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 264 MEMTIEKLRFIAKSAQLPISLETPIG 289
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 120/199 (60%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ +L+++ + WA A ++ + L G
Sbjct: 85 RLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNMTLPAFRHRLHLGR 144
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 145 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 204
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 205 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 264
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 265 LRFIAKSAQLPISLETPIG 283
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 140/246 (56%), Gaps = 3/246 (1%)
Query: 191 LKTARVSEESIETSLLSLPSEALQEGLKQP--TIFSAERALNSRGR-RLTIARNEAEMSK 247
L+ A SEE+ ++ + E +E K+ T S L GR RL A E E+++
Sbjct: 49 LEVAEASEETSTKAVTATKEENSKEDSKKKSYTEDSIRLYLQEIGRIRLLRADEEIELAR 108
Query: 248 GVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPL 307
+ + LER +T LE G + WA+ + + ++ L G +E++++S L
Sbjct: 109 KIADLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFRRRLMLGRRAKEKMVQSNLRL 168
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A
Sbjct: 169 VVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 228
Query: 368 ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
+R I++P L IS+I+K K L+ G+ P + EIA+ +++ ++R ++ ++ S
Sbjct: 229 SRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPIS 288
Query: 428 IDQKIG 433
++ IG
Sbjct: 289 LETPIG 294
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + NLE I E E+G S WA + +
Sbjct: 121 LQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEMPVIRFR 180
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 181 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 240
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 241 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 300
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 301 MEMTIEKLRFIAKSAQLPISLETPIG 326
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 112/188 (59%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ G+ SL W Q G++E LK+ + G ++++I++
Sbjct: 43 KQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETELKKTVLEGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIPSEIAKELDLEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDVRVGD 230
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVEMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 203
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 204 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 263
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 264 MEMTIEKLRFIAKSAQLPISLETPIG 289
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + ++ WA A + K
Sbjct: 82 LQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVDMELPKFK 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 142 RRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 201
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 202 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATS 261
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 262 MEMTIEKLRFIAKSAQLPISLETPIG 287
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 128/220 (58%), Gaps = 2/220 (0%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 58 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDK 117
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 118 EWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 177
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 178 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQ 237
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 238 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 277
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + NE E+ G QV A + + K+ LEK+ + SL W+++A +SE L + L
Sbjct: 30 RVPLLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKL 89
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD +GYKFSTY
Sbjct: 90 GQRAKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYA 149
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ G+ P EIA L
Sbjct: 150 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRNPNPREIAAELELET 209
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++IR R S+D ++GD
Sbjct: 210 SQIREYLSIARQPISLDVRVGD 231
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+++ + WA+A + + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 274 LRFIAKSAQLPISLETPIG 292
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 117/190 (61%), Gaps = 2/190 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+S+ V V+ +LER + + ++ GK+ + WA+ G E V L++H+ G +E
Sbjct: 426 EVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGEDVEALRKHIRDGRSAKER 485
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
++ + LV+ +A+ Y G+ DL+Q G++G+++G E+FD RG++FSTY +WIR+S
Sbjct: 486 MVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAGRGFRFSTYATWWIRQS 545
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ ++ +R I++P ++ IS I+K KAL G+ P + EI + G+ +A+ R
Sbjct: 546 ITRAISDSSRSIRLPVHVHDTISMIRKHTKALHTQLGRPPREDEICESVGIDIAKYRLIM 605
Query: 420 ECLRIVGSID 429
EC + + S++
Sbjct: 606 ECSQNIVSLE 615
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL A E E+++ + + +LE I++TL + G+ + WA A+ + R + L G
Sbjct: 88 RLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIG 147
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 148 RKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 207
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++
Sbjct: 208 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 267
Query: 414 EIRSASECLRIVGSIDQKIG 433
++R ++ ++ S++ IG
Sbjct: 268 KLRFIAKSAQLPISLETPIG 287
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 118/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+ + + WA+A + + L G
Sbjct: 95 RLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGR 154
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 155 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 214
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 215 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 274
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 275 LRFIAKSAQLPISLETPIG 293
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 124/202 (61%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G+ AS A+AAG+SE LK+ L
Sbjct: 22 RVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQS 81
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 82 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 142 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPE 201
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
E++ R S++ K+GD
Sbjct: 202 EEVKDLMCRARQPMSLEMKVGD 223
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 120/199 (60%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+++ + + WA+A + + L G
Sbjct: 96 RLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGR 155
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 156 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 275
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 276 LRFIAKSAQLPISLETPIG 294
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 136/232 (58%), Gaps = 7/232 (3%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + NL K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQTMMNLLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK S+ WA+ + E+ L++ L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 AQRVGKEPSIQEWAKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
KI+K ++ L+ S G+ EIA+ + ++IR R S+D ++GD
Sbjct: 179 KIKKTQRELSQSLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGD 230
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 134/233 (57%), Gaps = 2/233 (0%)
Query: 203 TSLLSLPSEALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKT 260
+ L S P + G K+P + R L GR RL A E E+++ + + LERI+
Sbjct: 49 SKLASTPRRTAERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRE 108
Query: 261 TLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
+E E + S W + + R ++ L G ++++++S LV+ +A+ Y G+
Sbjct: 109 RIEDELDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 168
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380
F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L
Sbjct: 169 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 228
Query: 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
IS+I+K K L+ G+ P + EIA+ +++ ++R ++ ++ S++ IG
Sbjct: 229 ISRIKKTTKILSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIG 281
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WA+A V + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQVPLPQFRYRLHIGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 272 LRFIAKSAQLPISLETPIG 290
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WAQ ++ + L G
Sbjct: 84 RLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVDMALPAFRHRLHLGR 143
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 144 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 204 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 263
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 264 LRFIAKSAQLPISLETPIG 282
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 124/202 (61%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G+ AS A+AAG+SE LK+ L
Sbjct: 37 RVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQS 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 157 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPE 216
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
E++ R S++ K+GD
Sbjct: 217 EEVKDLMCRARQPMSLEMKVGD 238
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLARFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 233
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 234 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 293
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 294 MEMTIEKLRFIAKSAQLPISLETPIG 319
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLTRFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 233
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 234 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 293
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 294 MEMTIEKLRFIAKSAQLPISLETPIG 319
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L ++ + + WA+A +S +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQLSLPTFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 205
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 206 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 265
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 266 MEMTIEKLRFIAKSAQLPISLETPIG 291
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 118/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 273 LRFIAKSAQLPISLETPIG 291
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 118/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 273 LRFIAKSAQLPISLETPIG 291
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + WA+ + +
Sbjct: 76 LQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAFR 135
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
Q L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 136 QRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 195
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 196 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIADR 255
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 256 MEMTIEKLRFIAKSAQLPISLETPIG 281
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 116/201 (57%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + SG + WA AAG E+ L++ LA
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y + ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 308 GIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 367
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ + ++P + ++++ + L + + P + EIA G+ +
Sbjct: 368 HWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTRRLRRTLQRRPSNEEIAVDIGMPV 427
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 428 KRVEAAVNLPKYSVSLDSKIG 448
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 273 LRFIAKSAQLPISLETPIG 291
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 118/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 273 LRFIAKSAQLPISLETPIG 291
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G AS A+AAG+SE LK+ L
Sbjct: 52 RVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQI 111
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 112 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 171
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 172 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPE 231
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
E++ R S++ K+GD
Sbjct: 232 EEVKDLMCRARQPMSLEMKVGD 253
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G AS A+AAG+SE LK+ L
Sbjct: 22 RVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQS 81
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 82 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 142 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPE 201
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
E++ R S++ K+GD
Sbjct: 202 EEVKDLMCRARQPMSLEMKVGD 223
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L ++ + + WA+A + +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 205
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 206 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 265
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 266 MEMTIEKLRFIAKSAQLPISLETPIG 291
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 118/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L K G+ + WA+A + ++ L G
Sbjct: 77 RLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGR 136
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 137 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 196
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA +++ +
Sbjct: 197 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEK 256
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 257 LRFIAKSAQLPISLETPIG 275
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 112/188 (59%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 68 KQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETEVKQTVAQGKRAKQKMIEANLR 127
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 128 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 187
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 188 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPV 247
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 248 SLDVRVGD 255
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ K VQ + L +K L KE G SL+ WA SE LK ++
Sbjct: 29 RVPLLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKIST 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ P EIAK L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLNIARQPISLDVRVGD 230
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 274 LRFIAKSAQLPISLETPIG 292
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 136 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEMPVIRFR 195
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 196 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 255
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 256 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 315
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 316 MEMTIEKLRFIAKSAQLPISLETPIG 341
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +LE+ + KE+GK + WAQAA +S R L +A
Sbjct: 20 RVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARISRRELHSAIAS 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ + G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQARGRDATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVREYLERARQPLSLDLRVGD 221
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 272 LRFIAKSAQLPISLETPIG 290
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETDVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P +EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPVEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDVRVGD 230
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 146 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 205
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 206 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 265
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 266 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 325
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 326 MEMTIEKLRFIAKSAQLPISLETPIG 351
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 139 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 198
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 199 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 258
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 259 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 318
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 319 MEMTIEKLRFIAKSAQLPISLETPIG 344
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ + + G+ + W+QA + +
Sbjct: 75 LQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQ 134
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 135 RRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 194
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA
Sbjct: 195 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATR 254
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 255 MEMTIEKLRFIAKSAQLPISLETPIG 280
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 117/199 (58%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + + WA + + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVNMPLQAFRHRLYVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 136 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIADRMEMTIEK 255
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 256 LRFIAKSAQLPISLETPIG 274
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 121/204 (59%), Gaps = 5/204 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA-----SLNCWAQAAGVSERVLKQH 289
RL A E E+++ + + +ER++ L +E G A + WA+ G++ +
Sbjct: 116 RLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNPEPWAKELGMTVPAFRHR 175
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFS
Sbjct: 176 LFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 235
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 236 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRME 295
Query: 410 LSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 296 MTIEKLRFIAKSAQLPISLETPIG 319
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 124/217 (57%), Gaps = 1/217 (0%)
Query: 218 KQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
KQ T S L GR RL A E E+++ + + LERI+ L + + WA
Sbjct: 77 KQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWA 136
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
+A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++
Sbjct: 137 EAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 196
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G
Sbjct: 197 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 256
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 257 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 293
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 273 LRFIAKSAQLPISLETPIG 291
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 143 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 202
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 203 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 262
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 263 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 322
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 323 MEMTIEKLRFIAKSAQLPISLETPIG 348
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 3/225 (1%)
Query: 212 ALQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
A++ G K+P+ S L G L A E E++K +Q + +LE I+ L +E+G
Sbjct: 190 AMRIGNKRPSTDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 271 SLN--CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
L+ WA AAG++ L+Q L G + E+I++ LV+ +A+ Y + F DL+Q
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQE 309
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
G VG+++GAE+FD RGYKFSTY +WIR+++++ ++ +R I++P L IS+I K
Sbjct: 310 GCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKME 369
Query: 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ +G+ P EIA +S+ +I + + S+ Q +G
Sbjct: 370 QKFALYNGRPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMG 414
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 130/220 (59%), Gaps = 5/220 (2%)
Query: 220 PTIFSA----ERALNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNC 274
PT +S+ L+ GR + R E + K VQ + +K LE++ + A+L
Sbjct: 20 PTTYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLE 79
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ VSE+VLKQ + G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+
Sbjct: 80 WAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 139
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+G E+FD TRGYKFSTY +WIR++I++ +A+ AR I++P + +++KI++ ++ L S
Sbjct: 140 RGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELIQS 199
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P EIA+ L ++IR R S+D ++GD
Sbjct: 200 LGRSPTPSEIAQALELEPSQIREYLLMARHPISLDLRVGD 239
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETDVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDVRVGD 230
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 128/222 (57%), Gaps = 2/222 (0%)
Query: 214 QEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271
+ G K+P + R L GR RL A E E+++ + + LERI+ + + S
Sbjct: 52 ERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPS 111
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
WA+ + ++ L +G ++++++S LV+ +A+ Y G+ F DL+Q G++
Sbjct: 112 DAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 171
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L
Sbjct: 172 GLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLL 231
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ G+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 232 SQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 273
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERARQPLSLDLKVGD 221
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 115/188 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L +K LEK + +L WAQ A + +K+ + G ++++I++
Sbjct: 47 KQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTPNEVKKIIHQGKRAKQKMIEANLR 106
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY +WIR++I++ +A+
Sbjct: 107 LVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQ 166
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+K ++ L+ G+ P EIA+ L A+IR R
Sbjct: 167 QARTIRLPIHITEKLNKIKKTQRELSQKLGRSPSPNEIAEALQLEPAQIREYFSIARQPI 226
Query: 427 SIDQKIGD 434
S+D K+GD
Sbjct: 227 SLDVKVGD 234
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 7/232 (3%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQPT +SA+ L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTANVNTKTKQPT-YSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMSLLETKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK SL WA+ + E+ L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 AQSLGKEPSLQEWAKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
KI+K ++ L+ + G+ EIA+ + ++IR R S+D ++GD
Sbjct: 179 KIKKTQRELSQTLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGD 230
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL A E E+++ + + +LE I+ T + G+ + WA A + R + L G
Sbjct: 93 RLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIG 152
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 272
Query: 414 EIRSASECLRIVGSIDQKIG 433
++R ++ ++ S++ IG
Sbjct: 273 KLRFIAKSAQLPISLETPIG 292
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 1/222 (0%)
Query: 213 LQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271
+Q KQ T S L GR RL A E E+++ + + LER++ L + +
Sbjct: 60 VQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPH 119
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
WA A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++
Sbjct: 120 DREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 179
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L
Sbjct: 180 GLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLL 239
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ G+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 240 SQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 281
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 105/162 (64%)
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
L WA+AAG++ + +A+G ++++++S LV+ +A+ Y G+ F DL+Q G++
Sbjct: 140 LRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 199
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L
Sbjct: 200 GLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLL 259
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ G+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 260 SQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 301
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ K VQ + L K L KE G SL+ WA SE LK ++
Sbjct: 29 RVPLLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYVNQSENDLKHKIST 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ P EIAK L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLNIARQPISLDVRVGD 230
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E++ GK WA + +
Sbjct: 97 LQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFR 156
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 157 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 216
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 217 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 276
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 277 MEMTIEKLRFIAKSAQLPISLETPIG 302
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 114/197 (57%), Gaps = 2/197 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN--CWAQAAGVSERVLKQHLAFGWYC 296
A E E++K +Q + +LE I+ L +E+G A + WA AAG++ + L Q L G
Sbjct: 32 AGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAAGLNVQALHQRLRDGKSA 91
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
+ E+I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD RGYKFSTY +WI
Sbjct: 92 KNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFSTYAHWWI 151
Query: 357 RKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIR 416
R+++++ ++ +R I++P L IS+I K + +G+ P EIA +S +I
Sbjct: 152 RQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRNPTTEEIAAEMDMSAEKIT 211
Query: 417 SASECLRIVGSIDQKIG 433
+ + S+ Q +G
Sbjct: 212 QIKKAAQAPVSLAQTMG 228
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 122/206 (59%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LE+ + L +E + + WA + + +
Sbjct: 72 LQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEMELPAFR 131
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 132 RRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 191
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +
Sbjct: 192 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIATH 251
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 252 MEMTIEKLRFIAKSAQLPISLETPIG 277
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 116/199 (58%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVDMELPAFRYRLHVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 136 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEK 255
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 256 LRFIAKSAQLPISLETPIG 274
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++G+ WA + +
Sbjct: 167 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 226
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 227 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 286
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 287 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 346
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 347 MEMTIEKLRFIAKSAQLPISLETPIG 372
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D K+GD
Sbjct: 223 SLDVKVGD 230
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D K+GD
Sbjct: 223 SLDVKVGD 230
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 118/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ ++ + + WA A + ++ L G
Sbjct: 107 RLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGR 166
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 167 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 226
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 227 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEK 286
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 287 LRFIAKSAQLPISLETPIG 305
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 124/202 (61%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + LE++K L + +L WA+AA ++++ LK+ ++
Sbjct: 20 RVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAKITQKELKKRMSI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L +G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKNGRAATIPELAEELDLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVRDYLEKSRQPLSLDLRVGD 221
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 4/218 (1%)
Query: 221 TIFSAERA---LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWA 276
T F+A+ L GR + R+E + K VQ + L K L KE SL WA
Sbjct: 13 TKFTADMVRTYLREIGRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWA 72
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
+ E+ + Q +A G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G
Sbjct: 73 AQVNLPEKEVTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERG 132
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
E+FD TRGYKFSTY +WIR++I++ +A+ R I++P + +++KI+K ++ L G
Sbjct: 133 VEKFDPTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKFG 192
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ P EIA L +IR R S+D K+GD
Sbjct: 193 RSPTPTEIAHELELEPMQIREYLNMARQPVSLDVKVGD 230
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 114/201 (56%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + +G + WA AAG E L++ L
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTDENTLRKRLDH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +C+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 308 GIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 367
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI++++ K V+ + ++P + ++++ K L + P + EIA G+ +
Sbjct: 368 HWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTKRLRRKLKRRPSNEEIAVDIGMPV 427
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+ +A + S+D KIG
Sbjct: 428 KRVEAAVSLPKYSVSLDSKIG 448
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 135/236 (57%), Gaps = 15/236 (6%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + ++PT FSA+ L+ GR + + +E E+ G QV +++ T LEK
Sbjct: 1 MPTAKVNPKTQKPT-FSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QKMMTLLEK 54
Query: 265 ------ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
E GK +L WA +SE L + + G + ++I++ LV+ +A+ Y+
Sbjct: 55 KDQLAIELGKEPNLTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLN 378
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 174
Query: 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+++KI+K ++ L+ G+ EIAK L A+IR R S+D ++GD
Sbjct: 175 EKLNKIKKTQRELSQQLGRSATPAEIAKALDLEPAQIREFLSMSRQPISLDVRVGD 230
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 118/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA A ++ ++ L G
Sbjct: 94 RLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDMALPEFRRRLYLGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 274 LRFIAKSAQLPISLETPIG 292
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L+ + + + WA A + +
Sbjct: 79 LQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVEMPLPQFR 138
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 139 HRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 198
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 199 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 258
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 259 MEMTIEKLRFIAKSAQLPISLETPIG 284
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 114/193 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + K VQ + L+ K L++E G A+ W+QAAG+SE L L G + ++I
Sbjct: 38 EIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGERAKRKMI 97
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY +WIR++I+
Sbjct: 98 EANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWWIRQAIT 157
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A+ +R I++P + +++KI++ ++ L G+ P EI + L+ ++R
Sbjct: 158 RAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPSVGEIGQELDLTPEQVREYLTM 217
Query: 422 LRIVGSIDQKIGD 434
R S+D +IGD
Sbjct: 218 SRQPISLDVRIGD 230
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 121/208 (58%), Gaps = 9/208 (4%)
Query: 235 RLTIARNEAEMSKGVQVVA---------NLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
+L A E +S+ +QV LE+++ L+++ G+ + + W+ A G+++ +
Sbjct: 271 KLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVGMNQTL 330
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ + G +++L+ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD G
Sbjct: 331 FELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGAEKFDPEMG 390
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+++++ + +R I++P + IS+I K+R + G+ D E+A
Sbjct: 391 FKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEVISRINKSRMMIAEDQGRQARDEEVA 450
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIG 433
G+S+ ++ + R+ S+DQ IG
Sbjct: 451 TAVGISVEKLDFILKSARLPASMDQLIG 478
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 14/229 (6%)
Query: 220 PTIFSAERALNSR-------------GRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKE 265
PT+ + LN+R GR + R E K VQ + L K L K+
Sbjct: 2 PTVNTQTENLNTRFTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKK 61
Query: 266 SGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDL 325
+ ++ WA SE ++Q +A G ++++I++ LV+ +A+ Y+ + F DL
Sbjct: 62 LHREPDMSEWADVVQQSETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 326 LQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQ 385
+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+ R I++P + +++KI+
Sbjct: 122 IQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIK 181
Query: 386 KARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ L + G+ P EIAK L A+IR R S+D K+GD
Sbjct: 182 KVQRELAQTLGRSPTPAEIAKELELEPAQIREYLNMARQPVSLDVKVGD 230
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 116/199 (58%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA + + + L G
Sbjct: 81 RLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDMPLQSFRHRLHIGR 140
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 141 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 200
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 201 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 260
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 261 LRFIAKSAQLPISLETPIG 279
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE ++ LE ++G+ S + A+A+G+S LK+ L
Sbjct: 37 RVPLLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQH 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 157 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPE 216
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ R S++ K+GD + + L +
Sbjct: 217 DDVKDLMCRARQPVSLEMKVGDGDDTELLEL 247
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETEVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDVRVGD 230
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 235 RLTIARNEAEMSKGVQV---VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ G QV +A LE K TLEK+ + + WA+A G S LK +
Sbjct: 36 RVPLLTHEQEIVFGKQVQQMMAFLE-AKETLEKKLKREPTEEEWAEAVGHSVGDLKNLVK 94
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY
Sbjct: 95 IGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMRGYKFSTY 154
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A+ AR I++P + +++KI+K ++ LT + G+ P EI + L
Sbjct: 155 AYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQNLGRSPSPSEIGEALELE 214
Query: 412 LAEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 215 PAQIREYLLMARQPVSLDLRVGD 237
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 107/188 (56%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ G SL WA SE + Q + G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPTEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDVRVGD 230
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 112/193 (58%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 133 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 192
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ +S R LV+ +A Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WIR++
Sbjct: 193 INQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQA 252
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I + +A +R I++P + ++KI +AR L+ + P EIA++ ++++ +R S
Sbjct: 253 IVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVS 312
Query: 420 ECLRIVGSIDQKI 432
E R S+DQ +
Sbjct: 313 ERSRTPISVDQAV 325
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAATIAELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D K+GD
Sbjct: 200 KQVRDYLERSRQPLSLDLKVGD 221
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 92 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFR 151
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 152 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 211
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 212 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 271
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 272 MEMTIEKLRFIAKSAQLPISLETPIG 297
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 112/193 (58%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 26 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 85
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ +S R LV+ +A Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WIR++
Sbjct: 86 INQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQA 145
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I + +A +R I++P + ++KI +AR L+ + P EIA++ ++++ +R S
Sbjct: 146 IVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVS 205
Query: 420 ECLRIVGSIDQKI 432
E R S+DQ +
Sbjct: 206 ERSRTPISVDQAV 218
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 118/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G WA + +
Sbjct: 166 LQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFR 225
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 226 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 285
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 286 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 345
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 346 MEMTIEKLRFIAKSAQLPISLETPIG 371
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 93 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDMPLSKFR 152
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 153 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 212
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 213 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 272
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 273 MEMTIEKLRFIAKSAQLPISLETPIG 298
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L ++ T+ E G+ SL WA+ A +S L+ L
Sbjct: 29 RVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 89 GQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+KA++ L+ G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++IR R S+D ++GD
Sbjct: 209 SQIRDYLTIARQPISLDLRVGD 230
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L +K TL +E G+ SL WA AA + E L++ ++
Sbjct: 20 RVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAANIDELQLQKTISA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y I DL+Q G +G+ +G E+FD ++GY+FSTY
Sbjct: 80 GENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA+++L G+ E+A LS
Sbjct: 140 YWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLAQQFGRAATINELAAELELSS 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVREYLERARQPLSLDLRVGD 221
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 111/199 (55%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L E ++ + VQ + LE +K L + G+ S+ W +AA + L+ L G
Sbjct: 36 LLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAADLEIAELQTLLEKGHK 95
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++I + LV+ +A+ YR + DL+Q G +G+ + AE++D RG++FSTY +W
Sbjct: 96 AKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKYDPQRGFRFSTYAYWW 155
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +A R I++P L ++KI++ ++ L+ S G+ P E+A+ L+ ++
Sbjct: 156 IRQGITRAIAEQGRTIRLPIHLTEALNKIKRTQRELSQSLGRSPTTAEVAQALSLTPEKV 215
Query: 416 RSASECLRIVGSIDQKIGD 434
+ C SID KIGD
Sbjct: 216 QQYLHCAHHTLSIDLKIGD 234
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G VQ + L+ I+ +LE+ + + WAQAA +SE L + L
Sbjct: 28 RVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQ 87
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD +RGYKFSTY
Sbjct: 88 GRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPSRGYKFSTYA 147
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L+ G+ EIA L
Sbjct: 148 YWWIRQAITRAIAQQGRSIRLPIHITEKLNKIKKTQRELSQQLGRSATSAEIAVALELEP 207
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D K+GD
Sbjct: 208 AQIRDYLTLSRQPISLDAKVGD 229
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 123/211 (58%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G QV + ++E ++T LE G S + A+A+G++ LK+ L
Sbjct: 34 RVPLLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQH 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 94 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A+Y L
Sbjct: 154 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTITELAQYVELPE 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ R S++ K+GD + + L +
Sbjct: 214 DDVKDLMCRARQPVSLEMKVGDGDDTELLEL 244
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + ++ LER +T LE G + WA+ G + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQALPKFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA+
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTEEEIAER 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIG 288
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 268
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 269 MEMTIEKLRFIAKSAQLPISLETPIG 294
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 117/206 (56%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 160 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDMPLIKFR 219
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 220 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 279
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 280 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 339
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 340 MEMTIEKLRFIAKSAQLPISLETPIG 365
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 268
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 269 MEMTIEKLRFIAKSAQLPISLETPIG 294
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 118/212 (55%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P E+A + G+S
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 424
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
++ R S+ Q I + + I P
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 456
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 268
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 269 MEMTIEKLRFIAKSAQLPISLETPIG 294
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L +K++L E G + + WAQA + E+ L+Q +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIAT 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
+ +++++ LV+ +A+ Y I DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 AELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA+++L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLSQKLGRAATVTELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 PQVREYLERARQPLSLDLRVGD 221
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLPKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 209
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 210 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 269
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 270 MEMTIEKLRFIAKSAQLPISLETPIG 295
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 109/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESEVKQTVQQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIA+ L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPAEIAQELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D K+GD
Sbjct: 223 SLDVKVGD 230
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 119/199 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER+ L ++ + + WA+A + + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 271
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 272 LRFIAKSAQLPISLETPIG 290
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 111/194 (57%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L K L G+ S WAQA+ +S LKQ +A G Y + ++
Sbjct: 28 QEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSSAELKQAIAEGEYAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A R I++P + +++KI+KA++ L+ G+ E+A+ L+ ++R E
Sbjct: 148 TRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATAAELAQELDLTPKQVRDYLE 207
Query: 421 CLRIVGSIDQKIGD 434
R S+D ++GD
Sbjct: 208 QARQPLSLDLRVGD 221
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 266
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 267 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 326
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 327 MEMTIEKLRFIAKSAQLPISLETPIG 352
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 266
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 267 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 326
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 327 MEMTIEKLRFIAKSAQLPISLETPIG 352
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 118/212 (55%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 185 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 244
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 245 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 304
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P E+A + G+S
Sbjct: 305 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 364
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
++ R S+ Q I + + I P
Sbjct: 365 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 396
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ L +SG+ S+ WA+AA ++ L + +A
Sbjct: 34 RVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 214 KQVREYLEKARLPLSLDLRLGD 235
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLAKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 209
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 210 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 269
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 270 MEMTIEKLRFIAKSAQLPISLETPIG 295
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 112/190 (58%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
+ K VQ + +L I ++L + + WA A G+SE L + G + ++++
Sbjct: 12 LGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQAKHRMVEAN 71
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y + DL+Q G +G+ +G E+FD ++GY+FSTY +WIR++I++ +
Sbjct: 72 LRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAI 131
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A +R I++P + +++KI+KA++ T HG+ P EIA+ TG ++ ++R + R
Sbjct: 132 AEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQVREYLDRSRQ 191
Query: 425 VGSIDQKIGD 434
S+D K+GD
Sbjct: 192 PLSLDLKVGD 201
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L + + WA+A + +
Sbjct: 68 LQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDMPLPKFQ 127
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 128 RRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 187
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 188 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 247
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 248 MEMTIEKLRFIAKSAQLPISLETPIG 273
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 108/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA E +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETEVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDVRVGD 230
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + WA A +S +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVKMSVGQFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 HRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIG 288
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ A L+ K L K G+ S WA+ AGVS + LKQ L
Sbjct: 21 RVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALED 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA+++L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRSLAQDLGRAATIAELADELDLNP 200
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+IR E R+ S+D ++GD
Sbjct: 201 KQIREYLERARLPLSLDLRVGD 222
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L + + WA+A + +
Sbjct: 82 LQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVELPINSFR 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 142 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 201
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 202 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 261
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 262 MEMTIEKLRFIAKSAQLPISLETPIG 287
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 115/192 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + E I+ L+ E + + A G+SER L+ L G + ++I
Sbjct: 92 EVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRVAKRKMI 151
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 152 RSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFSTYAYWWIRQAIT 211
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A++ +S +R +
Sbjct: 212 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLQRNPSEVELAQFLEISAEHLRQLLQL 271
Query: 422 LRIVGSIDQKIG 433
R S++ ++G
Sbjct: 272 RRKSLSLNHRVG 283
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 115/190 (60%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
++K VQ L+ IK TL K + + WA+AA +SE L++ +A G +E+++++
Sbjct: 32 LAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAKISEEELRRTMAAGKAAKEKMVEAN 91
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +
Sbjct: 92 LRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAI 151
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A +R I++P + +++KI+KA++ L G+ E+A+ L+ ++R E R
Sbjct: 152 AEKSRTIRLPIHITEKLNKIKKAQRQLAQKQGRAATISELAQELELTPRQVREYLERARQ 211
Query: 425 VGSIDQKIGD 434
S+D ++GD
Sbjct: 212 PLSLDLRVGD 221
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 124/202 (61%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + WA+ A +S + L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISRKELQSIIEI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ +E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVVELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVREYLERARQPLSLDLRVGD 221
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 122/211 (57%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE ++T LE + G+ +N +A AG+S LK+ L
Sbjct: 37 RVPLLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKS 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+++Y L
Sbjct: 157 YWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEYVELPE 216
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ S++ KIGD + L++
Sbjct: 217 TDVKDLMSRAGQPVSLETKIGDGEDTILLDL 247
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 154 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFR 213
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 214 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 273
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 274 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 333
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 334 MEMTIEKLRFIAKSAQLPISLETPIG 359
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 116/199 (58%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL E E+++ + + LE + E ++G+ WA + ++ L G
Sbjct: 138 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGR 197
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 198 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 257
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++ +
Sbjct: 258 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEK 317
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 318 LRFIAKSAQLPISLETPIG 336
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + + WA+AA +S+R + +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSKREFRSIVES 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVTELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVREYLERARQPLSLDLRVGD 221
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 121/206 (58%), Gaps = 6/206 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L K L K+ + +L WA+ +S++ L++ L G ++++
Sbjct: 44 QEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQAKQKM 103
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRG++FSTY +WIR+ +
Sbjct: 104 IEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWWIRQGV 163
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A+ +R I++P + +++KI++ ++ L+ G+ P IEIA+ L ++R E
Sbjct: 164 TRAIAQQSRTIRLPIHMTEKLNKIKRTQRELSQKLGRTPTSIEIAEAIDLQPEQVR---E 220
Query: 421 CLRIVG---SIDQKIGDCLNAKYLNI 443
CL + S++ +IGD + + NI
Sbjct: 221 CLLLARHPISLEARIGDEQDTELQNI 246
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 114/199 (57%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L + L WA + + L G
Sbjct: 74 RLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGR 133
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 134 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 193
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 194 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 253
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 254 LRFIAKSAQLPISLETPIG 272
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 133/236 (56%), Gaps = 15/236 (6%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + +QP +FSA+ L+ GR + + +E E+ G QV +R+ T LEK
Sbjct: 1 MPTAKVNSNKQQP-VFSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QRMMTLLEK 54
Query: 265 ES------GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
+ G SL WA + E L + +A G + ++I++ LV+ +A+ Y+
Sbjct: 55 KEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLN 378
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 174
Query: 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+++KI+K ++ L G+ EIA+ L A+IR R S+D ++GD
Sbjct: 175 EKLNKIKKTQRELAQQLGRSATPGEIAQALDLEPAQIREYLSMARQPVSLDVRVGD 230
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 115/203 (56%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
+ E E++K +Q + E++ L + G+ + + A AAG +E L L +
Sbjct: 88 KEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRR 147
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR+
Sbjct: 148 MISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQG 207
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A R I++P + +I+K+++ + L S + P D EIA+ +SL ++R+
Sbjct: 208 ITRTIANQGRTIRLPVHVVEQINKLRRVYRDLRRSLNRIPNDTEIAQELEISLPQLRNLQ 267
Query: 420 ECLRIVGSIDQKIGDCLNAKYLN 442
+ R S++ ++G N + L+
Sbjct: 268 QIRRKTLSLNHRLGTDENTELLD 290
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 116/199 (58%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L + + + WA + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 272
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 273 LRFIAKSAQLPISLETPIG 291
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 133/231 (57%), Gaps = 5/231 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLE 263
+P+ L + +P IFSA+ L+ GR L E + K VQ + L K LE
Sbjct: 1 MPTAKLDQNNDKP-IFSADMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELE 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+E G+ A+ W Q AG+S+ L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 EELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
I+K ++ L G+ EIA+ GL ++IR R S+D ++GD
Sbjct: 180 IKKVQRELAQKLGRNATPTEIAEELGLEPSQIREYLSIARQPISLDVRVGD 230
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 117/206 (56%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 199 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFR 258
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 259 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 318
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 319 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 378
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 379 MEMTIEKLRFIAKSAQLPISLETPIG 404
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L K LE + GK SL WA +SE L + +
Sbjct: 29 RVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E++D T+GYKFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAQELELDT 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLNVARQPISLDVRVGD 230
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + + K TL +E + + WA SE LK+ +
Sbjct: 35 RVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSEAELKKAIDQ 94
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 95 GTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 154
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ + G+ EIAK L
Sbjct: 155 YWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQTLGRNATPTEIAKELDLEP 214
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 215 AQIREYLSIARQPISLDVRVGD 236
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQVVAN--LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L ++ +L + G+ SL WA AA + L +A
Sbjct: 34 RVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSAAELAQELDLTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 214 KQVREYLERARLPLSLDLRLGD 235
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 118/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 157 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFR 216
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 217 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 276
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 277 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 336
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 337 MEMTIEKLRFIAKSAQLPISLETPIG 362
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 114/188 (60%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ++ +L K L + + +L WAQAA + LK+ + G ++++I++
Sbjct: 43 KQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTPAELKKLIHQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+K ++ L+ G+ P EIA L ++IR R
Sbjct: 163 QARTIRLPIHITEKLNKIKKTQRELSQKLGRSPNQSEIANALDLEPSQIREYFSIARQPI 222
Query: 427 SIDQKIGD 434
S+D K+GD
Sbjct: 223 SLDVKVGD 230
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 118/212 (55%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P ++A + G+S
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGNYRPSKEQLASHVGVSTE 424
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
++ R S+ Q I + + + P
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTP 456
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 119/205 (58%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L ++ G+ + + WA+AAG+S LK+ L G +E
Sbjct: 26 QQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGRRAKE 85
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 86 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 145
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 146 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEEVKDL 205
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 206 MCRARQPVSLEMKVGDGDDTELLEL 230
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMS--KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+S K VQ + L+ K TL+K+ S AQ +SE +K+
Sbjct: 29 RVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSEMEVKEIFQK 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I + LV+ +A+ Y+G + F DL+Q G++G+ +G E+FD TRGYKFSTY
Sbjct: 89 GVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQEGSLGLERGVEKFDSTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI + +++ +++ +R I++P L +++K++K ++ L+ + P EIA+ L+
Sbjct: 149 YWWISQGMTRAISQQSRTIRLPIHLTEKLNKLKKVQRELSQKLNRSPSMFEIAEKMQLNP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D+++GD
Sbjct: 209 AQIRELLMISRQPVSLDKQVGD 230
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 126/211 (59%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE +++ L+ ++G+ S + A+A+G+S LK+ L
Sbjct: 37 RVPLLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQH 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 157 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPE 216
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ R S++ K+GD + + L +
Sbjct: 217 DDVKDLMCRARQPVSLEMKVGDGDDTELLEL 247
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 118/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 140 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKFR 199
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 200 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 259
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 260 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 319
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 320 MEMTIEKLRFIAKSAQLPISLETPIG 345
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 123/217 (56%), Gaps = 18/217 (8%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-----------WA 276
L GR RL A E E+++ + + LERI+ + ++ L+C WA
Sbjct: 73 LQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQ------LDCDPDDLERHPEPWA 126
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
++ + L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++
Sbjct: 127 SEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 186
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G
Sbjct: 187 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMG 246
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ P + EIA+ +++ ++R ++ ++ S++ IG
Sbjct: 247 RKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIG 283
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 116/199 (58%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ + LE I+ L + + +L WA+A +S LK+ + G ++++
Sbjct: 28 QEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEALKKTVEIGQQAKDKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ YRG + DL+Q G++G+ +G E+FD +GY+FSTY +WIR++I
Sbjct: 88 MRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A R I++P +N ++SKI+KA++ ++ G+ E+A+ L ++R
Sbjct: 148 TRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATVSEVAEKVSLPAEKVRELQR 207
Query: 421 CLRIVGSIDQKIGDCLNAK 439
R+ S++ +IG N +
Sbjct: 208 QSRLPLSLNMRIGSEQNTE 226
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 122/212 (57%), Gaps = 3/212 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L + G A S A+AAG+S VLK+ L
Sbjct: 31 RVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQ 90
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 91 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 150
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A Y L
Sbjct: 151 AYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTELAGYVELP 210
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ R S++ K+GD + + L++
Sbjct: 211 EEEVKDLLCRARQPVSLETKVGDGEDTELLDL 242
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 122/212 (57%), Gaps = 3/212 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L + G A S A+AAG+S VLK+ L
Sbjct: 15 RVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQ 74
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 75 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 134
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A Y L
Sbjct: 135 AYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTELAGYVELP 194
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ R S++ K+GD + + L++
Sbjct: 195 EEEVKDLLCRARQPVSLETKVGDGEDTELLDL 226
>gi|269926941|ref|YP_003323564.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269790601|gb|ACZ42742.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 596
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A A + +++ K +A G R+ LI++ LV+ +A+ Y G GI DL+Q GN+G+++
Sbjct: 236 ANQADIQDKITK-WIAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIK 294
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
E+F H +GYKFSTY +WIR++I++ +A AR I+IP + I+KI +AR+ LT
Sbjct: 295 AVEKFRHQKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQEL 354
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P + EIA Y G+ + +IR + + S++ +G+
Sbjct: 355 GREPTEQEIANYLGIPVEKIREVQKISQEPISLENPVGE 393
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 121/211 (57%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G QV + LE ++T LE + G+ +N +A AG+S LK+ L
Sbjct: 37 RVPLLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKS 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+++Y L
Sbjct: 157 YWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEYVELPE 216
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ S++ KIGD + L++
Sbjct: 217 TDVKDLMSRAGQPVSLETKIGDGEDTILLDL 247
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 107/188 (56%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L KE SL+ WA SE L + G ++++I++
Sbjct: 43 KQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSETELNHLMVQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L + G+ P EIAK L A+IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPTEIAKELELEPAQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++G+
Sbjct: 223 SLDVRVGE 230
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ L + G+ S+ WA+AA ++ L +A
Sbjct: 34 RVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 214 KQVREYLEKARLPLSLDLRLGD 235
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L ++ L + G +L WA +A V L +A
Sbjct: 34 RVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAE 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y I DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P IE+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAIELADELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 214 RQVRECLEKARLPLSLDLRLGD 235
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 117/202 (57%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + +E +K +L G+ L A A +SE ++Q+L G + +I
Sbjct: 100 EIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRAAKRRMI 159
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 160 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 219
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA + L + P ++E+A+ ++ ++R +
Sbjct: 220 RTIANDARTIRLPIHIVEKLNKLKKAHRDLRRELQRNPTEVELAQSLDMTPDQLRGLQQV 279
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + + +
Sbjct: 280 RRRSLSLNHRVGKGEDTELMEL 301
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 133/232 (57%), Gaps = 7/232 (3%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQV--VANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ G QV + +L +K L
Sbjct: 1 MPTANVNSKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIVYGKQVQRMMSLFEMKDQL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ G S WA+A + E LK+ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 TQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
KI+K ++ L+ G+ EIA + ++IR R S+D ++GD
Sbjct: 179 KIKKTQRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGD 230
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 122/212 (57%), Gaps = 3/212 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE + LE + G+ S WA AAG+S +LK+ L+
Sbjct: 31 RVPLLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLS 90
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 91 SGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 150
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A L
Sbjct: 151 AYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSELAVCVELP 210
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ R S++ K+GD + + L++
Sbjct: 211 EEEVKDLLCRARQPVSLETKVGDGEDTELLDL 242
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 125/203 (61%), Gaps = 3/203 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ +K +Q V +L IK +L E + G+ S + WA+AA +S R L++ +
Sbjct: 19 RVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIK 78
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 79 EGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTY 138
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A++ L+
Sbjct: 139 AYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELT 198
Query: 412 LAEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 199 PKQVREYLERSRHPLSLDLRVGD 221
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 1/207 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + L K L KE + + WA ++E L
Sbjct: 31 LHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELS 90
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+HAR I++P + +++KI+K ++ LT G+ P EIA
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIATA 210
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
L ++IR R S+D ++GD
Sbjct: 211 LELHPSQIREYLLMARHPVSLDLRVGD 237
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 122/212 (57%), Gaps = 3/212 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE + LE + G+ S WA AAG+S +LK+ L+
Sbjct: 47 RVPLLTHEQEITLGRQVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLS 106
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 107 SGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 166
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A L
Sbjct: 167 AYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSELAVCVELP 226
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ R S++ K+GD + + L++
Sbjct: 227 EEEVKDLLCRARQPVSLETKVGDGEDTELLDL 258
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ ++L+ ++ L + + +L WA+AA + L + +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIAD 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEFAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSASELASELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 200 KQVREYLEKARLPLSLDLRLGD 221
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 134/232 (57%), Gaps = 7/232 (3%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + N K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMNFLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK ++ W++ + ++ L Q L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 ADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
KI+K ++ L+ + G+ EIA+ + ++IR R S+D ++GD
Sbjct: 179 KIKKTQRELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGD 230
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 1/207 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + L K L KE + + WA ++E L
Sbjct: 31 LHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELS 90
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+HAR I++P + +++KI+K ++ LT G+ P EIA
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIAAA 210
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
L ++IR R S+D ++GD
Sbjct: 211 LELHPSQIREYLLMARHPVSLDLRVGD 237
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L ++ L + G+ +L WA A + L + +A
Sbjct: 51 RVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIAD 110
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 111 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 170
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 171 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPTAAELAQELELTP 230
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 231 KQVREYLEKARLPLSLDLRLGD 252
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ LE +K +L +E G+ ++ WA+AA ++++ L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMTQKELRSAIEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATIAELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 RQVREYLERARQPLSLDLRVGD 221
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 116/204 (56%), Gaps = 5/204 (2%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN-----CWAQAAGVSERVLKQHL 290
L E E++ +Q + LE ++ LE+E+ + + WA AA V+ER LK+ L
Sbjct: 268 LLTGEQEVELAMRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERL 327
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
G + ++I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD RGYKFST
Sbjct: 328 DAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFST 387
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR+++++ ++ +R I++P L IS++ K + L +G+ P EIA+ +
Sbjct: 388 YAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQLVMKYGRDPTTEEIAEVMDM 447
Query: 411 SLAEIRSASECLRIVGSIDQKIGD 434
++ +I + + S+ Q + D
Sbjct: 448 TVEKINQIQKASLVPISLSQSVND 471
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 120/210 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ AG++ R+L+ L G
Sbjct: 269 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 328
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 329 NRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAF 388
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I K V RH+R I++P K+ + K+ +A+K +P E+A+ G+++
Sbjct: 389 WWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVE 448
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+I RI S+ Q + N + I
Sbjct: 449 KIDKLLFSARIPISMQQTVWADQNTTFQEI 478
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV ++ L ++ L + G+ +L W++AA + + L +A
Sbjct: 20 RVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ + G+ P +E+A L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQNLGRAPSIVELATALELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 200 KQVREYLERARLPLSLDLRVGD 221
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 117/212 (55%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S LK + G
Sbjct: 244 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRG 303
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 304 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 363
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+SI K + +++R I++P + + K+ +ARK P ++A + G+S
Sbjct: 364 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTE 423
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
++ R S+ Q I + + I P
Sbjct: 424 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 455
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E E+ +Q + NLE +K LE + G+ +L WAQA G+S VLK L G
Sbjct: 233 KQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSG 292
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + +V+ +A+ Y+ G+ DLLQ G VG+++ E+F G +F+TY
Sbjct: 293 NRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAY 352
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I+K + +H+R I++P + + K+ +A+++ P EIA+ G+++
Sbjct: 353 WWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAID 412
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
++ R S+ Q + N + I
Sbjct: 413 KLEKLLCFTRTPLSMQQTVWSDQNTTFQEI 442
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 112/188 (59%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 50 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 109
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 110 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 169
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI++ ++ L +G+ EIAK L ++IR R
Sbjct: 170 NSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 229
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 230 SLDLRVGD 237
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ ++ V+ + L ++K L ++S SL+ WA A ++ L++ L
Sbjct: 32 RVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVEMTPTQLQETLDN 91
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R+++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY
Sbjct: 92 GEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQEGTLGLQRGVEKFDPDKGYKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ + + +R I++P + + + KI+KAR+ LT G+ P EI+ + L
Sbjct: 152 YWWIRQAITRALDQKSRSIRLPIHVCQTLKKIKKARRDLTQQLGRNPTISEISSHVSLKP 211
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+I+ R S+D ++G+
Sbjct: 212 AQIQDYLHMSRQPVSLDLRVGE 233
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ++A+L +T LE G+ SL WA A +S L + +
Sbjct: 20 RVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQG 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ S G+ E+A L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATINELAVELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A++R E R S+D ++GD
Sbjct: 200 AQVREYLERARQPLSLDVRVGD 221
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 115/199 (57%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER + L + + + WA + + L G
Sbjct: 94 RLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEK 273
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 274 LRFIAKSAQLPISLETPIG 292
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 112/188 (59%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 48 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI++ ++ L +G+ EIAK L ++IR R
Sbjct: 168 NSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 227
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 228 SLDLRVGD 235
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 114/188 (60%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ L K L +E + SL WA+AA + + L + LA G + +++++
Sbjct: 48 KQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEIAKRKMVEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
L++ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY +WIR++I++ +A
Sbjct: 108 LLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAE 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+KA++ L+ + G+ P E+A+ ++ ++R E R+
Sbjct: 168 KARTIRLPIHITEKLNKIKKAQRDLSQTLGRSPSIAELAQELEITPKQVRDCLEKARLPL 227
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 228 SLDLRLGD 235
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 118/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E E G + WA + +
Sbjct: 134 LQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFR 193
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 194 RRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 253
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 254 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAES 313
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 314 MEMTIEKLRFIAKSAQLPISLETPIG 339
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+S G QV + +L K L K+ G+ A+ WAQ + L++
Sbjct: 29 RVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQK 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI++ ++ L+ G+ P EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSPSEIARELELQP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSVARQPISLDVRVGD 230
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE + L EK G+A A+AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 149 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPEDEVKEL 208
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L++
Sbjct: 209 MCRARQPVSLEMKVGDGDDTELLDL 233
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 114/192 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ +Q + +E ++ E+E G+ + A A G++ER L+Q L + ++I
Sbjct: 73 EVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQVAKRKMI 132
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 133 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 192
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A ++ +++ +
Sbjct: 193 RTIANDARTIRLPIHIVEKLNKLKKAQRELRRDLKRPPTEAELATVLEITEEQLQQLLQV 252
Query: 422 LRIVGSIDQKIG 433
R S++ ++G
Sbjct: 253 RRQSLSLNVRVG 264
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L EK G+A A+AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 149 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEDEVKEL 208
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L++
Sbjct: 209 MCRARQPVSLEMKVGDGDDTELLDL 233
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 133/232 (57%), Gaps = 7/232 (3%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQV--VANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ G QV + +L +K L
Sbjct: 1 MPTANVNSKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIVYGKQVQRMMSLFEMKDQL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ G S WA+A + E L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 TQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
KI+K ++ L+ G+ EIA + ++IR R S+D ++GD
Sbjct: 179 KIKKTQRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGD 230
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 112/195 (57%), Gaps = 1/195 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 35 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 94
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 95 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 154
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I++P + +++KI+K ++ L+ G+ E+A L+ A++R
Sbjct: 155 ITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYL 214
Query: 420 ECLRIVGSIDQKIGD 434
E R S+D ++GD
Sbjct: 215 EKARHPLSLDLRVGD 229
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L I+ L + G ++ WA A+ + L Q +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAV 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+++ L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQGLGRAPTVAELSQELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 200 KQVREYLEKARLPLSLDLRLGD 221
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 134/232 (57%), Gaps = 7/232 (3%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + N K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMNFLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK ++ W++ + ++ L Q L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 ADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ +R I++P + +++
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLN 178
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
KI+K ++ L+ + G+ EIA+ + ++IR R S+D ++GD
Sbjct: 179 KIKKTQRELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGD 230
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 119/203 (58%), Gaps = 1/203 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+V+ E I+ L+++ + + W +A + S R L+ L G + ++
Sbjct: 75 EVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGRVAKRKM 134
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 135 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 194
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + P + E+A +SL+++ E
Sbjct: 195 TRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQQLQRNPNEQELANELNVSLSQLHQLLE 254
Query: 421 CLRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 255 LRRQSLSLNHRVGKAEDTELVDL 277
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 112/195 (57%), Gaps = 1/195 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 148
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I++P + +++KI+K ++ L+ G+ E+A L+ A++R
Sbjct: 149 ITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYL 208
Query: 420 ECLRIVGSIDQKIGD 434
E R S+D ++GD
Sbjct: 209 EKARHPLSLDLRVGD 223
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 113/188 (60%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ L K L +E + SL WA+AA + + L + L G + +++++
Sbjct: 48 KQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEIAKRKMVEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY +WIR++I++ +A
Sbjct: 108 LVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAE 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+KA++ L+ + G+ P E+A+ ++ ++R E R+
Sbjct: 168 KARTIRLPIHITEKLNKIKKAQRYLSQTLGRSPSIAELAQELEITPKQVRDCLEKARLPL 227
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 228 SLDLRLGD 235
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 175 LQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPLIKFR 234
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 235 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 294
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 295 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 354
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 355 MEMTIEKLRFIAKSAQLPISLETPIG 380
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 108/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + ++ W SE L + G ++++I++
Sbjct: 46 KQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSEAELNDLIRKGQRAKQKMIEANLR 105
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 106 LVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPIRGYKFSTYAYWWIRQAITRAIAQ 165
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+K ++ L + G+ P +EIA+ L A+IR R
Sbjct: 166 QARTIRLPIHITEKLNKIKKVQRELAQTLGRSPNAVEIAEALELEPAQIREYLNLARQPV 225
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 226 SLDVRVGD 233
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L+++ G A L A+AAG+S LK+ L G +E
Sbjct: 63 QQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKE 122
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 123 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 182
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 183 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEDEVKEL 242
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L++
Sbjct: 243 MCRARQPVSLEMKVGDGDDTELLDL 267
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 116/206 (56%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E G WA +S +
Sbjct: 156 LQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEMSLIKFR 215
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G + ++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 216 RRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 275
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 276 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 335
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 336 MEMTIEKLRFIAKSAQLPISLETPIG 361
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIG 288
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVRDYLERSRQPLSLDLRVGD 221
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E + G WA + +
Sbjct: 128 LQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFR 187
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E+++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 188 RRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 247
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 248 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAES 307
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 308 MEMTIEKLRFIAKSAQLPISLETPIG 333
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 68 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 127
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 128 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 187
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 188 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 247
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 248 MEMTIEKLRFIAKSAQLPISLETPIG 273
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 262
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 263 MEMTIEKLRFIAKSAQLPISLETPIG 288
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 120/211 (56%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +E ++ LE G + + A+AA +S LK+ L
Sbjct: 34 RVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 94 GHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 154 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAQFVDLPE 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ R S++ K+GD + + L +
Sbjct: 214 DEVKDLMCRARQPVSLEMKVGDGDDTELLEL 244
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 113/188 (60%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI+K ++ L +G+ EIAK L ++IR R
Sbjct: 168 NSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 227
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 228 SLDLRVGD 235
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 80 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 139
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 140 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 199
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 200 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 259
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 260 MEMTIEKLRFIAKSAQLPISLETPIG 285
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 214
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 215 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 274
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 275 MEMTIEKLRFIAKSAQLPISLETPIG 300
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 137/258 (53%), Gaps = 20/258 (7%)
Query: 206 LSLPSEALQE--GLKQPTIFSAERALNSR--GRRLTIARN---------------EAEMS 246
+S+P+ A++ G QP +A+ SR G + + R+ E +
Sbjct: 10 VSVPTVAVKSAAGASQPAKSGPTKAMASRPSGTDVDLVRSYLRDIGRVPLLSHQQEITLG 69
Query: 247 KGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTR 305
+ VQ + +LE + L EK G+A A+AAG+S LK+ L G +E ++ +
Sbjct: 70 RQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANL 129
Query: 306 PLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVA 365
LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+ I++ +A
Sbjct: 130 RLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIA 189
Query: 366 RHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIV 425
+R I++P + ++K++K ++ L+ G+ P E+A + L E++ R
Sbjct: 190 EKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPEDEVKELMCRARQP 249
Query: 426 GSIDQKIGDCLNAKYLNI 443
S++ K+GD + + L++
Sbjct: 250 VSLEMKVGDGDDTELLDL 267
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 120/211 (56%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +E ++ LE G + + A+AA +S LK+ L
Sbjct: 34 RVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 94 GHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 154 YWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAQFVDLPE 213
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ R S++ K+GD + + L +
Sbjct: 214 DEVKDLMCRARQPVSLEMKVGDGDDTELLEL 244
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+IR + R+ S+D ++GD
Sbjct: 201 KQIREYLDRARLPLSLDLRVGD 222
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 121/206 (58%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 214
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA
Sbjct: 215 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 274
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 275 MEMTIEKLRFIAKSAQLPISLETPIG 300
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 124/218 (56%), Gaps = 2/218 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ +K +L +E G +L WA AA +S L H+
Sbjct: 20 RVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L + G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQNLGRAATVGELAQELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPPFFFPS 450
++R E R S+D ++GD + + + + PS
Sbjct: 200 KQVREYLERARQPLSLDLRVGDNQDTELVELLEDTGPS 237
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 112/194 (57%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ L +KT +++ G+ S WA AA + L Q L G + ++
Sbjct: 37 QEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQAKRQM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY +WIR++I
Sbjct: 97 IEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWWIRQAI 156
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A+ AR I++P + +++KI++ ++ L+ + G+ EIA+ L + ++R
Sbjct: 157 TRAIAQQARTIRLPIHITEKLNKIKRVQRELSQTLGRSATVGEIAEALELEVTQVREYLT 216
Query: 421 CLRIVGSIDQKIGD 434
R S+D +IGD
Sbjct: 217 MARQPISLDVRIGD 230
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ IK +L + + +L WA +AG+ L + +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIAL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A LS
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATVSELAAELELSP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 200 KQVREYLERARLPLSLDLRVGD 221
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L ++ T E G+ S WA A +S L+ L
Sbjct: 29 RVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSPSQLELSLHQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 89 GQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+KA++ L+ G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++IR R S+D ++GD
Sbjct: 209 SQIRDYLTIARQPISLDLRVGD 230
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 152 LQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPVIKFR 211
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 212 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 271
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 272 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 331
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 332 MEMTIEKLRFIAKSAQLPISLETPIG 357
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ TL + G+ +L WA+A +S+ L++ +
Sbjct: 21 RVPLLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIRE 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+K ++ LT G+ EIA+ GL+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIAEELGLTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+IR E R+ S+D ++GD
Sbjct: 201 KQIRECLERARLPLSLDLRVGD 222
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+IR + R+ S+D ++GD
Sbjct: 201 KQIREYLDRARLPLSLDLRVGD 222
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 123/213 (57%), Gaps = 2/213 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + ++ + LE ++G + A + +S +K+ +
Sbjct: 24 RIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLDLSINQVKRKIIH 83
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E+++ S LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 84 GKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVEKFDPTRGYKFSTYA 143
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ ++ +R I++P + E++K++KA++ L+ S G+ P IE+AK L+
Sbjct: 144 YWWIRQGITRAISEQSRTIRLPIHITEELNKLKKAQRDLSQSLGRTPTVIELAKMIKLTE 203
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
E++ + S++ KIGD + L + P
Sbjct: 204 KEVKELLCHAKQPVSLEMKIGDGDDTVLLELLP 236
>gi|219847152|ref|YP_002461585.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219541411|gb|ACL23149.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 398
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 118/210 (56%), Gaps = 14/210 (6%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E ++++ ++ ER TL +S +AA L R+ +Q G
Sbjct: 113 LLTAEQEKQLAQMIERGQAAERKLATLPPDSPEAAKLR----------RIKEQ----GDE 158
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+++ + LV+ +A+ YR G+P DL+Q G++G+L+ E+FDHT+GYKFSTY +W
Sbjct: 159 ARQKMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWW 218
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I++++S+ +A +R +++P L +++IQ AR+ LT S G+ P D E+A + G+S ++
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
R + S+ +G+ ++ + P
Sbjct: 279 RELRRTAQDPVSLATPVGEEADSTLADFIP 308
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATISELAEELDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVRDYLERSRQPLSLDLRVGD 221
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 126/211 (59%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ + TLE+ + A+ WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLAQDLGRAATIAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
A+IR R S+D ++GD + + +++
Sbjct: 209 AQIREYFRVSRHPISLDVRVGDNQDTELMDL 239
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE +++ L+ ESG+ + A+ AG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L E++
Sbjct: 149 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEEEVKDL 208
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 209 MCRARQPVSLEMKVGDGDDTELLEL 233
>gi|1519642|gb|AAB07554.1| SigD [Chloroflexus aurantiacus J-10-fl]
Length = 398
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 14/210 (6%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E +++ ++ ER TL +S +AA L KQ A G
Sbjct: 113 LLTAEQEKRLAQLIEQGQEAERKLATLPPDSPEAARL--------------KQLKAKGEE 158
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R E+ + LV+ +A+ YR G+P DL+Q G++G+L+ E+FD+T+GYKFSTY +W
Sbjct: 159 ARHEMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDYTKGYKFSTYATWW 218
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I++++S+ +A +R +++P L +++IQ AR+ LT S G+ P D E+A + G+S ++
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ + S+ +G+ N+ + P
Sbjct: 279 ATVRRTAQDPVSLATPVGEEANSTLADFIP 308
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESG----KAASLNCWAQAAGVSERVLKQHL 290
RL A E E+++ + + LE+ + L E G + S + WA + ++ L
Sbjct: 111 RLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAVKVDMPLPRFRRRL 170
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFST
Sbjct: 171 YEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 230
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +
Sbjct: 231 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEM 290
Query: 411 SLAEIRSASECLRIVGSIDQKIG 433
++ ++R ++ ++ S++ IG
Sbjct: 291 TIEKLRFIAKSAQLPISLETPIG 313
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 114/195 (58%), Gaps = 1/195 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E ++ V+++ E I+ L ++ + S WAQA G+S R L++ L G + ++
Sbjct: 82 EVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGKVAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 201
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + P + E+A + A++R E
Sbjct: 202 TRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQKLQRNPSEQELADELKIPPAQLRQLLE 261
Query: 421 CLRIVGSIDQKIGDC 435
R S++ ++G
Sbjct: 262 LRRQSLSLNHRVGKA 276
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 114/202 (56%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + I K L ++ + + + WA +SE L + +
Sbjct: 29 RVPLLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWAAQVHLSEDELTRIITL 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L G++ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKTQRELAQKLGRHATPTEIAVALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLNIARQPVSLDVRVGD 230
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 108/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L KE + + WA +SE LK+ + G ++++I++
Sbjct: 50 KQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRRAKQKMIEANLR 109
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 110 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 169
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
HAR I++P + +++KI+K ++ L G+ P EI L ++IR R
Sbjct: 170 HARTIRLPIHITEKLNKIKKVQRELAQQLGRSPTPAEIGSALELHPSQIREYLLMARHPV 229
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 230 SLDLRVGD 237
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 122/219 (55%), Gaps = 4/219 (1%)
Query: 220 PTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCW 275
P F+A+ L+ GR L E + K VQ + L K L G+ S W
Sbjct: 29 PPTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEW 88
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A+AA +S L ++L G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +
Sbjct: 89 AEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 148
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P + +++KI+K ++ L+
Sbjct: 149 GVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQL 208
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ E+AK + ++IR R S+D ++GD
Sbjct: 209 GRSATPAEVAKALEIDPSQIREYLSLSRQPISLDVRVGD 247
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + +L + G+ +L WA+A + L + +A
Sbjct: 34 RVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELAQELELTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 214 KQVREYLEKARLPLSLDLRLGD 235
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 122/219 (55%), Gaps = 4/219 (1%)
Query: 220 PTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCW 275
P F+A+ L+ GR L E + K VQ + L K L G+ S W
Sbjct: 12 PPTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEW 71
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A+AA +S L ++L G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +
Sbjct: 72 AEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P + +++KI+K ++ L+
Sbjct: 132 GVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQL 191
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ E+AK + ++IR R S+D ++GD
Sbjct: 192 GRSATPAEVAKALEIDPSQIREYLSLSRQPISLDVRVGD 230
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 112/193 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + K VQ L ++ +L + G +L WA A+ + L Q +A + ++
Sbjct: 29 EIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPLELNQAIADADEAKRRMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 89 EANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 148
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A R I++P + +++KI+KA++ L+ G+ P E+AK L+ A++R E
Sbjct: 149 RAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAKELDLTPAQVREYLEK 208
Query: 422 LRIVGSIDQKIGD 434
R+ S+D ++GD
Sbjct: 209 ARLPLSLDLRLGD 221
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 116/198 (58%), Gaps = 1/198 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L + E +SK +++ NL + L E G S WA +S L + L +
Sbjct: 369 LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEW 428
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++++ + LV+ +A+ Y G+ +DL+Q G++G+L+G E+FDHTRGYK STYV +W
Sbjct: 429 ARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWW 488
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ +++ +A H+R +++P ++ + +I+KA+ L S G EI++ T L+ +I
Sbjct: 489 IRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLL-SEGCTASVQEISEATNLTGTKI 547
Query: 416 RSASECLRIVGSIDQKIG 433
++ + + + S+D++IG
Sbjct: 548 KNTLQVTKKLVSLDKEIG 565
>gi|163849112|ref|YP_001637156.1| RNA polymerase sigma factor RpoD [Chloroflexus aurantiacus J-10-fl]
gi|222527085|ref|YP_002571556.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163670401|gb|ABY36767.1| RNA polymerase sigma factor RpoD [Chloroflexus aurantiacus J-10-fl]
gi|222450964|gb|ACM55230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 398
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 116/210 (55%), Gaps = 14/210 (6%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E +++ ++ ER TL +S +AA L KQ A G
Sbjct: 113 LLTAEQEKRLAQLIEQGQEAERKLATLPPDSPEAARL--------------KQLKAKGEE 158
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+++ + LV+ +A+ YR G+P DL+Q G++G+L+ E+FD+T+GYKFSTY +W
Sbjct: 159 ARQQMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDYTKGYKFSTYATWW 218
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I++++S+ +A +R +++P L +++IQ AR+ LT S G+ P D E+A + G+S ++
Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
R + S+ +G+ ++ + P
Sbjct: 279 RELRRTAQDPVSLATPVGEEADSTLADFIP 308
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 115/193 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E ++K VQ L+ IK L + + + WA AA ++E L + +A G +E+++
Sbjct: 29 EIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAKITEEELHRAIAAGKAAKEKMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 89 EANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 148
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A +R I++P + +++KI+KA++ L+ + G+ E+A+ L+ ++R E
Sbjct: 149 RAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAATISELAEELELTPRQVRDYLER 208
Query: 422 LRIVGSIDQKIGD 434
R S+D K+GD
Sbjct: 209 ARQPLSLDLKVGD 221
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 115/202 (56%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L K L E G+ + WA+AAG+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHA 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQKLGRAATANELAAELELTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+IR E R+ S+D ++GD
Sbjct: 201 KQIREYLERARLPLSLDLRVGD 222
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 133/236 (56%), Gaps = 15/236 (6%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + ++PT FSA+ L+ GR + + +E E+ G QV +++ T LEK
Sbjct: 1 MPTAKVNPKNQKPT-FSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QKMMTLLEK 54
Query: 265 ESGKA------ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
+ A SL WA +SE L + + G + ++I++ LV+ +A+ Y+
Sbjct: 55 KDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLN 378
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 174
Query: 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+++KI+K ++ L+ G+ EIAK L +IR R S+D ++GD
Sbjct: 175 EKLNKIKKTQRELSQQLGRSATPSEIAKALDLEPDQIREFLSMSRQPISLDVRVGD 230
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 114/193 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E +K VQ L +IK +L+++ G+ + + WA+ A +S + LK L G + +++
Sbjct: 29 EIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEAAKRKMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 89 EANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 148
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A R I++P + +++KI+KA++ L G+ E+A+ L+ ++R E
Sbjct: 149 RAIAEKGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMATIAELAEELELTPKQVRDYLEK 208
Query: 422 LRIVGSIDQKIGD 434
R S+D K+GD
Sbjct: 209 SRQPISLDVKVGD 221
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 115/199 (57%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L WA A + ++ L G
Sbjct: 79 RLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDMPLPAFRRRLHLGR 138
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 139 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 198
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ +
Sbjct: 199 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEK 258
Query: 415 IRSASECLRIVGSIDQKIG 433
+R ++ ++ S++ IG
Sbjct: 259 LRFIAKSAQLPISLETPIG 277
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELDLEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ + TLE+ + + WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +ARN + + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ R I++P + +++KI+K ++ L G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLAQDLGRAATIAEIAEALELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
A+IR R S+D ++GD + + +++
Sbjct: 209 AQIREYFRVSRHPISLDVRVGDNQDTELMDL 239
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 109/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + ++ K L K+ + ++ WA +SE L + G ++++I++
Sbjct: 44 KQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSEADLHDTVRRGQRAKQKMIEANLR 103
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 104 LVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 163
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+K ++ L G+ P EIA L ++IR R
Sbjct: 164 QARTIRLPIHITEKLNKIKKIQRELAQRLGRSPSPAEIATELELEPSQIREYLNLARQPV 223
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 224 SLDVRVGD 231
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ +K +Q + LE+ K TL K+ +L WA+AA +SE+ L+ +
Sbjct: 20 RIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQ 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI++ ++ L+ G+ E+A+ LS
Sbjct: 140 YWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELAEALELST 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R R S+D K+GD
Sbjct: 200 EQVREYLGKARQPLSLDLKVGD 221
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E+++G WA + +
Sbjct: 165 LQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDMPPVKFR 224
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 225 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 284
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA+
Sbjct: 285 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAES 344
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 345 MEMTIEKLRFIAKSAQLPISLETPIG 370
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 118/210 (56%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ G++ R+L L G
Sbjct: 272 KQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSG 331
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 332 SRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAF 391
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I K V RH+R I++P K+ + K+ +A+K +P E+A+ G+++
Sbjct: 392 WWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVE 451
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+I RI S+ Q + N + I
Sbjct: 452 KIDKLLFSARIPISMQQTVWADQNTTFQEI 481
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQVVAN--LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ ++ +L + G+ +L WA+ + + L +A
Sbjct: 34 RVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSVGELATELDLTP 213
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 214 KQVREYLEKARLPLSLDLRLGD 235
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 114/202 (56%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G VQ + L K L + + ++ WA + E LK+ +
Sbjct: 54 RVPLLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQ 113
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 114 GTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 173
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ G+ EI + L
Sbjct: 174 YWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQRLGRNATPTEIGQELELEP 233
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 234 AQIREYLSIARQPVSLDVRVGD 255
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE +++ L+ ESG+ + A+ AG+S LK+ L G +E
Sbjct: 49 QQEITLGRQVQDLMELEALESELKSESGEEVVAPEALAKKAGLSGVQLKRKLQAGRRAKE 108
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 109 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 168
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L E++
Sbjct: 169 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEEEVKDL 228
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 229 MCRARQPVSLEMKVGDGDDTELLEL 253
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 112/188 (59%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
++R I++P + +++KI++ ++ L +G+ EIAK L ++IR R
Sbjct: 168 NSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQIRDYLLASRHPV 227
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 228 SLDLRVGD 235
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L+ + G+ + A+AAGVS LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 149 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEEVKDL 208
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 209 MCRARQPVSLEMKVGDGDDTELLEL 233
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 117/208 (56%), Gaps = 8/208 (3%)
Query: 235 RLTIARNEAEMSKGVQV------VANLERIKTTLEKESGKAASLNC--WAQAAGVSERVL 286
R+ + +E E+ G QV +A E + L + G+ A ++ WA AA + E L
Sbjct: 85 RVPLLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESEL 144
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
H+ G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GY
Sbjct: 145 DHHMRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGY 204
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
KFSTY +WIR++I++ +A+ AR I++P + +++KI++ ++ L+ G+ P EI +
Sbjct: 205 KFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQKLGRSPNAAEIGQ 264
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGD 434
L ++R R S+D +IGD
Sbjct: 265 ELELEPKQVREYLSIARQPISLDVRIGD 292
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 113/194 (58%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ ++ L +K TL ++ G + W+QAAG+S L+Q + G + ++
Sbjct: 28 QEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGETAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A R I++P + +++KI+KA + L+ G+ E+A LS +IR E
Sbjct: 148 TRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTATIGELAVELELSPKQIREYME 207
Query: 421 CLRIVGSIDQKIGD 434
R S+D ++GD
Sbjct: 208 RARHPLSLDLRVGD 221
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 119/208 (57%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +A R I++P + +++K++K + L S + P + E+A+ ++ ++
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLNKLKKVYRDLRRSLQRNPTETELAREMQVTCEQL 238
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNI 443
R + R S++ +IG +++ L++
Sbjct: 239 RYLQQVRRQSLSLNHRIGSEESSELLDV 266
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
+ K VQ + L + L KE G+ A+ WA A ++ L L G ++++I++
Sbjct: 23 LGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGERAKQKMIEAN 82
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +
Sbjct: 83 LRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAI 142
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
A+ AR I++P + +++KI++ ++ L G+ E+AK L +IR R
Sbjct: 143 AQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEVAKALELEPEQIREYLTLARQ 202
Query: 425 VGSIDQKIGD 434
S+D ++GD
Sbjct: 203 PVSLDLRVGD 212
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSMARQPISLDVRVGD 230
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 116/202 (57%), Gaps = 3/202 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESG---KAASLNCWAQAAGVSERVLKQHLA 291
RL A E E+++ + + LE + L ++ + +L WA + K L
Sbjct: 93 RLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVEMDMPLDKFKNRLH 152
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 153 SGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 212
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA ++
Sbjct: 213 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPSEEEIATRMEMT 272
Query: 412 LAEIRSASECLRIVGSIDQKIG 433
+ ++R ++ ++ S++ IG
Sbjct: 273 IEKLRFIAKSAQLPISLETPIG 294
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+ K LE+++ S WA+AA V+ L++ +
Sbjct: 20 RVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ + G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQIAQQKGRSATIAELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 RQVREYLERARQPLSLDLRVGD 221
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L ++ L + + +L WA AA + L + +A
Sbjct: 20 RVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTATELAQELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+++ E R+ S+D ++GD
Sbjct: 200 KQVQECLEKARLPLSLDLRLGD 221
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 118/208 (56%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +A R I++P + +++K++K + L S + P + E+A+ +S +
Sbjct: 179 IRQGITRTIANQGRTIRLPVHIVEQLNKLKKVYRDLKRSLQRNPTETELAREMEVSCEHL 238
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNI 443
R + R S++ +IG +++ L++
Sbjct: 239 RYLQQVRRQSLSLNHRIGSEESSELLDV 266
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 117/202 (57%), Gaps = 3/202 (1%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ AG++ R+L+ L G
Sbjct: 138 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 197
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 198 IRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAF 257
Query: 354 YWIRKSISKMVARHARGIKIPCKLNRE---ISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
+WIR++I K V RH+R I++P L + + K+ +A+K +P E+A+ G+
Sbjct: 258 WWIRQAIRKAVFRHSRTIRLPINLEKVFILLGKVIEAKKLYIQEGNLHPTKEELARRVGV 317
Query: 411 SLAEIRSASECLRIVGSIDQKI 432
++ +I RI S+ Q +
Sbjct: 318 TVEKIDKLLFSARIPISMQQTV 339
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 123/215 (57%), Gaps = 10/215 (4%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + NE E++ G VQ + +LE+++ LE +GK S A AG+S R L + L
Sbjct: 30 RVPLLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKR 89
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 90 GVRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 149
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E++ Y + +
Sbjct: 150 YWWIRQGITRAIAEKSRIIRLPIHITELLNKLKKGQRELSQHLERTPTMQELSAYVEIPV 209
Query: 413 AEIRS----ASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ AS+ + S++ K+GD + L++
Sbjct: 210 EEVKDLMFRASQPV----SLESKVGDGEDTSLLDL 240
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + L + G+ +L WA A + L +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLESTELNDIIAD 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAEELELTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 200 KQVREYLEKARLPLSLDLRLGD 221
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 120/207 (57%), Gaps = 1/207 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + +L ++ L KE + W+ AG+SE +
Sbjct: 91 LHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMT 150
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 151 EIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 210
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+++R I++P + +++KI++ ++ L +G+ EIAK
Sbjct: 211 FSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKA 270
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
L ++IR R S+D ++GD
Sbjct: 271 LDLEPSQIRDYLLASRHPVSLDLRVGD 297
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L ++ G+ + A+AAGVS LK+ L G +E
Sbjct: 43 QQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGRRAKE 102
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 103 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 162
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 163 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEEVKDL 222
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 223 MCRARQPVSLEMKVGDGDDTELLEL 247
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 122/203 (60%), Gaps = 3/203 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLA 291
R+ + +E E+ K VQ ++ L+ ++ L E G+ + + WA+A+ +++ L + +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIA 79
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 AGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTY 139
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ P E+A L+
Sbjct: 140 AYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELATELELT 199
Query: 412 LAEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 200 TKQVREYLERARLPLSLDLRVGD 222
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 108/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + + + WA ++ L + + G ++++I++
Sbjct: 43 KQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAAAELPETIKRGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+K ++ L G+ P EIA L A+IR R
Sbjct: 163 QARTIRLPIHITEKLNKIKKVQRELAQKLGRSPNANEIAIALELEPAQIREYLNLARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDIRVGD 230
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L ++ L + G+ +L WA A + L Q +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIAD 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
+ +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 AEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ P E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSVAELAQELELTS 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 200 RQVREYLEKARVPLSLDIRLGD 221
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 122/202 (60%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++K V+ + +++ ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 96 EVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRVAKRKMI 155
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 156 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 215
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + EIA++ +S+ ++R +
Sbjct: 216 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEIAEFLEMSVQQLRQLQQL 275
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 276 RRQALSLNHRVGKEEDTELMDL 297
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L ++ G+A A AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 149 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEEEVKDL 208
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 209 MCRARQPVSLEMKVGDGDDTELLEL 233
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L+ + G+ + A+AAGVS LK+ L G +E
Sbjct: 43 QQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGRRAKE 102
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 103 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 162
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 163 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEEVKDL 222
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 223 MCRARQPVSLEMKVGDGDDTELLEL 247
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 103/170 (60%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ VQ + ++ + L +E G+ + AQA ++ER + L G + ++I
Sbjct: 82 EIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQISKRKMI 141
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 142 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWWIRQAIT 201
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+ +A AR I++P + +++K++K ++ L + P++ E+A+ +S
Sbjct: 202 RTIANDARTIRLPIHIVEKLNKLKKVQRELKQKLQRTPDETELAEALDIS 251
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + +L WA E L + G ++++I++
Sbjct: 43 KQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPEAELNLTVHQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+K ++ L G+ P EIAK L +IR R
Sbjct: 163 QGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAEIAKELELEPLQIREYLNMARQPV 222
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 223 SLDVRVGD 230
>gi|367468373|ref|ZP_09468244.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365816548|gb|EHN11575.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 367
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 106/171 (61%), Gaps = 5/171 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ GK L A+ +++R+ + L ++++++S LV+ +A+NYR G+PF
Sbjct: 104 KDIGKVRLLTA-AEEVDLAKRIERGDLD----AKQKMVESNLRLVVSIAKNYRNQGLPFL 158
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G +G+++ AE+FD+ +G+KFSTY +WIR++I++ +A AR I+IP + +++K
Sbjct: 159 DLIQEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKLNK 218
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
I +A + L G+ P EIA+ TG+ E+ S + S+++ +GD
Sbjct: 219 IGRAERKLVTELGREPTPEEIAEVTGIDPEEVESIKRSAQAPVSLEKPVGD 269
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 116/199 (58%), Gaps = 1/199 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGW 294
L A E ++++ V+ + + E + L + + S A A G+ +ER L L G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A +R I++P + +++K++KA++ L S + P ++E+A+ G++
Sbjct: 184 WIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRELKQSLQRNPTEVELAEEMGINEQA 243
Query: 415 IRSASECLRIVGSIDQKIG 433
+ + R S++ ++G
Sbjct: 244 LHQLLQLKRQSLSLNHRVG 262
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 121/211 (57%), Gaps = 6/211 (2%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESG-----KAASLNCWAQAAGVS 282
L GR RL A E E+++ + + LER + + + G + WA+ +S
Sbjct: 95 LQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWAEEVKMS 154
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
++ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH
Sbjct: 155 LPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 214
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P +
Sbjct: 215 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPTEE 274
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
EIA +++ ++R ++ ++ S++ IG
Sbjct: 275 EIATRMEITIEKLRFIAKSAQLPISLETPIG 305
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+S G V+ + L+ +K +L ++ G+ + + WA A+ +++ LK +A
Sbjct: 20 RVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATASCLTDSQLKSSIAV 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRTATISELAIELNLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S++ ++GD
Sbjct: 200 DQLREYFEQARQPLSLELRVGD 221
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 122/215 (56%), Gaps = 10/215 (4%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + N+ E++ G VQ + LE ++ + G+ +L+ A AAG++ LK+
Sbjct: 37 RVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAGLTVGALKKKFRL 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 97 GERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+A+Y +S
Sbjct: 157 YWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRDLSQQLSRTPSVAELAEYIDVSE 216
Query: 413 AEIRS----ASECLRIVGSIDQKIGDCLNAKYLNI 443
E++ AS+ + S++ K+GD + L++
Sbjct: 217 EEVKDLMLKASQPV----SLEMKVGDKDDTVLLDL 247
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + LE+ K +L ++ G +L WA+A+ +SE L+ +
Sbjct: 32 RVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRA 91
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 92 GQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ + G+ E+A L+
Sbjct: 152 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELATELDLTP 211
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 212 KQVREYLEKARQPLSLDLRVGD 233
>gi|347755938|ref|YP_004863502.1| RNA polymerase sigma factor RpoD/sigma-70 family RNA polymerase
sigma factor [Candidatus Chloracidobacterium
thermophilum B]
gi|347588456|gb|AEP12986.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Candidatus
Chloracidobacterium thermophilum B]
Length = 558
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 121/217 (55%), Gaps = 17/217 (7%)
Query: 222 IFSAERALNSRGRRLTI--ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAA 279
I +A+ AL + RR I A A++ + +V+A++E K LE S SL +
Sbjct: 252 IENAQAALKDKQRRARIDEAETRAQIEQAQKVIADIE--KRYLEPASRIKGSLREIFSST 309
Query: 280 GVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNY--RGLGIPFSDLLQAGNVGVLQGA 337
+E+ R E+I++ LV+ +A+NY R G+ FSDL+Q GN+G+++
Sbjct: 310 EEAEK-----------ARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAV 358
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FD+ RGYKFSTY +WIR+++++ +A R I++P + I+KI + + + G+
Sbjct: 359 EKFDYRRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMVETINKIVRTARLMVQELGR 418
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P E+A+ T L + ++R A + + S++ IGD
Sbjct: 419 EPTHEELAQRTDLPVVKVRQALKIAQEPISLETPIGD 455
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 102/165 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E +++K VQ + +++++ L+ G+ + AQ ++ER L+ L G + ++I
Sbjct: 85 EVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKGYKFSTYAYWWIRQAIT 204
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
+ +A AR I++P + +++K++KA++ L + P + E+AK
Sbjct: 205 RTIANDARTIRLPIHIVEKLNKLKKAQRELKQGLQRNPNEEELAK 249
>gi|157273328|gb|ABV27227.1| sigma 38 RpoS [Candidatus Chloracidobacterium thermophilum]
Length = 549
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 122/217 (56%), Gaps = 17/217 (7%)
Query: 222 IFSAERALNSRGRR--LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAA 279
I +A+ AL + RR + +A A++ + +V+A++E K LE SL +
Sbjct: 243 IENAQEALKDKRRRALIDVAEVRAQIEQAQKVIADIE--KRYLEPARRIKDSLREIFTST 300
Query: 280 GVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNY--RGLGIPFSDLLQAGNVGVLQGA 337
+E+ R E+I++ LV+ +A+NY R G+ FSDL+Q GN+G+++
Sbjct: 301 EEAEK-----------ARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAV 349
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FD+ RGYKFSTY +WIR+++++ +A R I++P + I+KI + + + G+
Sbjct: 350 EKFDYRRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMVETINKIVRTARLMVQELGR 409
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P E+A+ T L +A++R A + + S++ IGD
Sbjct: 410 EPTHEELAQRTDLPVAKVRQALKIAQEPISLETPIGD 446
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + LE + + G S A + G+S VL++ L
Sbjct: 26 RVPLLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELASSFGISPAVLRRRLIN 85
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 86 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 145
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A++ L
Sbjct: 146 YWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVGELAEFLELPE 205
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
E++ R S++ K+GD
Sbjct: 206 PEVKDLLSRARQPVSLEMKVGD 227
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 6/197 (3%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 148
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTN--SHGKYPEDIEIAKYTGLSLAEIRS 417
I++ +A AR I++P + +++KI+K ++ L+ S P E+A L+ A++R
Sbjct: 149 ITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLSTATLP---ELAAALDLTPAQVRD 205
Query: 418 ASECLRIVGSIDQKIGD 434
E R S+D ++GD
Sbjct: 206 YLEKARHPLSLDLRVGD 222
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ ++ L+ I+ L + + + WA+AAGVSE L+Q +
Sbjct: 20 RVPLLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GELAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAASAAELAEELDLTT 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVRDYLEKARQPLSLDLRVGD 221
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +E+IK +L+ + G+ + + WA AA ++ L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQKGRTATISELAEELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVREYLEKSRQPISLDVRVGD 221
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 115/202 (56%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAE--MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E + K VQ + L ++ TL E G+ +L A A + L L
Sbjct: 27 RVPLLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPPEKLNLALRK 86
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 87 GQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 146
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L+ G+ EIA+ L
Sbjct: 147 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELSQGLGRSATPAEIAQALELEP 206
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 207 AQIREYLTLSRQPISLDLRVGD 228
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 124/202 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE++ G + S + A ++E+ L+ L G + ++I
Sbjct: 107 EVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRVAKRKMI 166
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 167 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 226
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A++ +++ ++R +
Sbjct: 227 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEVEMAEFLEMTVQQLRQLQQL 286
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 287 RRQALSLNHRVGKEEDTELMDL 308
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 121/211 (57%), Gaps = 6/211 (2%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESG-----KAASLNCWAQAAGVS 282
L GR RL A E E+++ + + LER + + + G + WA+ +S
Sbjct: 94 LQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLWAEEVKMS 153
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
++ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH
Sbjct: 154 LPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 213
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P +
Sbjct: 214 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQELGRKPTEE 273
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
EIA +++ ++R ++ ++ S++ IG
Sbjct: 274 EIATRMEITIEKLRFIAKSAQLPISLETPIG 304
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L ++ G+A A AAG+S LK+ L G +E
Sbjct: 17 QQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGRRAKE 76
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 77 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 136
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A +R I++P + ++K++K ++ L+ G+ P E+A + L E++
Sbjct: 137 GITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEEEVKDL 196
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
R S++ K+GD + + L +
Sbjct: 197 MCRARQPVSLEMKVGDGDDTELLEL 221
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 117/212 (55%), Gaps = 9/212 (4%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L +E G++ S WA ++ R L L G + ++
Sbjct: 80 EIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGRVAKRKM 139
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 140 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 199
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + P + E+A+ +S ++ +
Sbjct: 200 TRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQKLQRNPSETELAQELDISADQLHHLLQ 259
Query: 421 CLRIVGSIDQKIG--------DCLNAKYLNIP 444
R S++ ++G D L L +P
Sbjct: 260 LRRQSLSLNHRVGKGEDTELVDLLEDDGLQLP 291
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 2/207 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L+ + + WA+ A VS L++ L
Sbjct: 20 RFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAK 439
+I R S+D +IGD N +
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTE 226
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 2/207 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L+ + + WA+ A VS L++ L
Sbjct: 20 RFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAK 439
+I R S+D +IGD N +
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTE 226
>gi|284046131|ref|YP_003396471.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283950352|gb|ADB53096.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 367
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 91/139 (65%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++++S LV+ +A+NYR G+PF DL+Q G +G+++ AE+FD+ +G+KFSTY +W
Sbjct: 131 AKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVRAAEKFDYRKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + +++KI +A + L G+ P EIA TG+ E+
Sbjct: 191 IRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVTELGREPTAEEIADVTGIDPEEV 250
Query: 416 RSASECLRIVGSIDQKIGD 434
S + S+++ +GD
Sbjct: 251 DSIKRSAQAPVSLEKPVGD 269
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ G QV ++++ K L K+ S WA ++E L + L
Sbjct: 35 RVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVELTEDELDRILDC 94
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY
Sbjct: 95 GRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYA 154
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+W+R++I++ +A++ R I++P + +++KI++ ++ L +G+ P EIA+ L
Sbjct: 155 YWWVRQAITRAIAQNGRTIRLPIHITEKLNKIKRVQRDLVQKYGRNPTPTEIAEALELEP 214
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++IR R S+D ++GD
Sbjct: 215 SQIREYLLASRHPISLDLRVGD 236
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 117/200 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L + E+++ +Q + LE +KT+L+ + G+ ++ WA+ AG++ R +K L G
Sbjct: 265 KQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCG 324
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ LV ++A++Y+G G+ DLLQ G+ G+++ ++F G +F++Y
Sbjct: 325 NRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFASYAY 384
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WI+++I K + H+R I++P K+ ++SK+ +A+K P E+A+ G+S
Sbjct: 385 WWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNLNPTKEELARRVGISPD 444
Query: 414 EIRSASECLRIVGSIDQKIG 433
++ RI S+ +G
Sbjct: 445 KVDRLLFVARIPISMQNTVG 464
>gi|417304271|ref|ZP_12091300.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica WH47]
gi|440713474|ref|ZP_20894075.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SWK14]
gi|327539483|gb|EGF26098.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica WH47]
gi|436441940|gb|ELP35132.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SWK14]
Length = 562
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 84/128 (65%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 323 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 382
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 383 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 442
Query: 427 SIDQKIGD 434
S+DQ +GD
Sbjct: 443 SLDQPVGD 450
>gi|421611154|ref|ZP_16052305.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SH28]
gi|408497968|gb|EKK02476.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SH28]
Length = 568
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 84/128 (65%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 329 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 388
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 389 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 448
Query: 427 SIDQKIGD 434
S+DQ +GD
Sbjct: 449 SLDQPVGD 456
>gi|449134505|ref|ZP_21770001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
europaea 6C]
gi|448886780|gb|EMB17173.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
europaea 6C]
Length = 568
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 84/128 (65%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 329 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 388
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 389 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 448
Query: 427 SIDQKIGD 434
S+DQ +GD
Sbjct: 449 SLDQPVGD 456
>gi|32474487|ref|NP_867481.1| transcription initiation factor sigma 70 [Rhodopirellula baltica SH
1]
gi|32445025|emb|CAD75027.1| transcription initiation factor sigma 70 [Rhodopirellula baltica SH
1]
Length = 568
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 84/128 (65%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F+H RGYKFSTY +WIR++I++ +A
Sbjct: 329 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIAD 388
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + ++KI++ + L HG+ P E++K +GLSL + R + R
Sbjct: 389 QSRTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPL 448
Query: 427 SIDQKIGD 434
S+DQ +GD
Sbjct: 449 SLDQPVGD 456
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L + + + + G+ S WA+ +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQQMMALLQKQEAIAETLGREPSQQEWAEGVQLSEADLAKALKQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +RGYKFSTY
Sbjct: 89 GQRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPSRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI++ ++ L G+ EIA+ L
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKFGRSATPAEIAEALELET 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+IR R S+D ++GD
Sbjct: 209 EQIREYLTISRQPISLDVRVGD 230
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 2/207 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ L+ +K L+ + + +L WA A +S L++ L
Sbjct: 20 RFPLLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTIQELAVEMDLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAK 439
+I R S+D +IGD N +
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTE 226
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 113/198 (57%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ +A++E + + +E + + A A SE + L +
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 212
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +A AR I++P + +++K++K ++ L + P + E+A L+ ++
Sbjct: 213 IRQGITRTIANDARTIRLPIHIVEKLNKLKKTQRELRKQLNRTPTEAELAAELDLTPEQL 272
Query: 416 RSASECLRIVGSIDQKIG 433
RS + R S++ ++G
Sbjct: 273 RSLQQVRRKSLSLNHRVG 290
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 121/208 (58%), Gaps = 7/208 (3%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGW 294
L A +E E++K ++ LE++K ++ ++G + WA+AA +S+ L+ + G
Sbjct: 126 LLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEELRHMVRVGT 185
Query: 295 YCREELIKSTRPLVLFLARNY---RGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
R+ L+++ V+ +A+ Y RG + DL+Q GN+G+++ E+FD GY+F+TY
Sbjct: 186 LARDRLVRANLRWVVAVAKKYHKQRGT-MSMQDLIQEGNIGLIRAVEKFDPRMGYRFTTY 244
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ + +R I++P + +I++I++A AL+ S G+ P + EIA++ GL
Sbjct: 245 ATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVGLD 304
Query: 412 LAEIRSASECLRIVG--SIDQKIGDCLN 437
+ +R E V S+D I + N
Sbjct: 305 PSRMRKFVESAAAVATVSLDVPINESDN 332
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 112/199 (56%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E+E+ VQ + +LE +K + + G+ +L WA A G+S V++ L G
Sbjct: 246 KQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSG 305
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + +V+ +A+ Y+G G+ DLLQ G++G+++ E+F G +F+TY
Sbjct: 306 NRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAY 365
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+++ K + +H+R I++P + + K+ +A+++ P E+AK G++
Sbjct: 366 WWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTV 425
Query: 414 EIRSASECLRIVGSIDQKI 432
+ R+ S+ Q +
Sbjct: 426 RLERLLYMARMPLSMQQTV 444
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 198
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 199 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQ 247
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ +K +L E + +L+ WA+ A + + L++ +
Sbjct: 24 RVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEK 83
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY
Sbjct: 84 GEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYA 143
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 144 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATISELAQELDLTP 203
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R+ S+D ++GD
Sbjct: 204 KQVREYLEKARVPLSLDLRLGD 225
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 198
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 199 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQ 247
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 116/199 (58%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L E ++K +Q + LE+ + TL+K+ + S WA+AA +SE+ L ++ G
Sbjct: 23 LLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEK 82
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD +GY+FSTY +W
Sbjct: 83 AKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFDPKKGYRFSTYAYWW 142
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A +R I++P + +++KI++ ++ L+ G+ E+++ L+ ++
Sbjct: 143 IRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELSEALELTTEQV 202
Query: 416 RSASECLRIVGSIDQKIGD 434
R R S+D K+GD
Sbjct: 203 RDYLGKARQPLSLDLKVGD 221
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 115/202 (56%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ +T LE + S WA+AAG+S L Q +
Sbjct: 20 RVPLLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISVDELTQAMDA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GDLAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPLKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQKLGRAATVAELAEEVKLTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D +IGD
Sbjct: 200 KQVRDYLEKSRSPLSLDLRIGD 221
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 140/266 (52%), Gaps = 32/266 (12%)
Query: 190 KLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGV 249
+L+T S+E+++TS + E LQ ++ I + +R + G R ++ R AE
Sbjct: 95 ELRTTATSQENLDTSQV----ECLQLYIR--LIEAHDRLASQLGHRPSLERWAAEAHIA- 147
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
L +K TL A WA+ AG++ L+Q G +E +IK+ LV+
Sbjct: 148 -----LSELKPTL------VAGKRSWAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVV 196
Query: 310 FLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHAR 369
+A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R
Sbjct: 197 SVAKKYQNRGLELLDLIQEGTMGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSR 256
Query: 370 GIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI- 428
I++P + +++KI+K ++ L+ + G P EIA ++ ++R LR+ S+
Sbjct: 257 TIRLPVHITEKLNKIKKVQRQLSQTQGHTPTIEEIAAALEMTPPQVREV--LLRVPRSVS 314
Query: 429 ---------DQKIGDCLNAKYLNIPP 445
D ++GD L A+ +I P
Sbjct: 315 LEIKVGKEKDTELGDLLEAE--DISP 338
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 123/208 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + ++ ++ LE E G+ S N A ++E+ L+ L G
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + +++K++KA++ L + P + E+A+ +S+ ++
Sbjct: 199 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMAESLEISVQQL 258
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNI 443
R + R S++ ++G + + +++
Sbjct: 259 RQLQQLRRQALSLNHRVGKEEDTELMDL 286
>gi|291302005|ref|YP_003513283.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571225|gb|ADD44190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 323
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 92/152 (60%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
ER L+Q +A G + L+K+ LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+
Sbjct: 73 ERDLRQIVAEGRRAKSMLLKANLRLVVSIAKRYVGRGVALLDLIQEGNLGLIRAVEKFDY 132
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
T+G+KFSTY +WIR++I++ +A AR I++P +I++I K R+ LT G+ P
Sbjct: 133 TKGFKFSTYATWWIRQAITRAMADQARTIRVPAHTAEQINRIAKIRRELTAEQGREPRHE 192
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA+ GL + R S+DQ + D
Sbjct: 193 EIAERMGLEPYRVLELLSYDRDPISLDQPVSD 224
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 99/159 (62%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G++
Sbjct: 137 WAIKMGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLI 196
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 197 RAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQE 256
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
G+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 257 MGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 295
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 109/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ +A + I+ L E + + WA AA +SE L+ + G + +++++
Sbjct: 31 KQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGERAKRKMVEANLR 90
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +A
Sbjct: 91 LVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAE 150
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
R I++P + +++KI+KA++ L+ G+ E+A L+ A++R E R
Sbjct: 151 KGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTPAQVREYLERARQPL 210
Query: 427 SIDQKIGD 434
S+D ++GD
Sbjct: 211 SLDVRVGD 218
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 116/210 (55%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ + L + L ++ + WA+ A +S L + G ++++
Sbjct: 37 QEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQRAKQKM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I
Sbjct: 97 IEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAI 156
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A+ AR +++P + +++KI+KA++ L+ G+ EIA+ L ++IR
Sbjct: 157 TRAIAQQARTVRLPIHITEKLNKIKKAQRVLSQRLGRSATPAEIAQELELEPSQIREYLT 216
Query: 421 CLRIVGSIDQKIGDCLNAKYLNIPPFFFPS 450
R S+D ++GD + + ++ PS
Sbjct: 217 LARQPVSLDLRVGDNQDTELRDLLEDDSPS 246
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 112/189 (59%), Gaps = 1/189 (0%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR + R+E E+++ VQ + L +K +L+ G S WA+AA V LK
Sbjct: 55 LQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELK 114
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G ++++I++ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+
Sbjct: 115 RQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYR 174
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+ I++ +A +R I++P + ++++I+K ++ L+ + G+ P EIA+
Sbjct: 175 FSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIAEE 234
Query: 408 TGLSLAEIR 416
+ A +R
Sbjct: 235 LEMEPAHVR 243
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|226185420|dbj|BAH33524.1| RNA polymerase sigma factor SigA [Rhodococcus erythropolis PR4]
Length = 452
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 141 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLADKGEKLPA 199
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 200 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 259
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 260 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 319
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 320 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 353
>gi|229491308|ref|ZP_04385134.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070925|ref|ZP_21974152.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
gi|229321847|gb|EEN87642.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452760008|gb|EME18351.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
Length = 430
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 33/222 (14%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 117 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLA 169
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 170 DKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 229
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 230 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 289
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 290 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 331
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|373455986|ref|ZP_09547801.1| RNA polymerase sigma factor RpoD [Dialister succinatiphilus YIT
11850]
gi|371934329|gb|EHO62123.1| RNA polymerase sigma factor RpoD [Dialister succinatiphilus YIT
11850]
Length = 400
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 90/139 (64%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+T+GYKFSTY +W
Sbjct: 167 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYTKGYKFSTYATWW 226
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + HG+ + E++K G+S+ +I
Sbjct: 227 IRQAITRSIADQARTIRVPVHMVETINKMNRVGRRFLQEHGREATNEELSKEMGISVEKI 286
Query: 416 RSASECLRIVGSIDQKIGD 434
R A + + S++ IG+
Sbjct: 287 REAKKAAQDPISLETPIGE 305
>gi|363420387|ref|ZP_09308479.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
gi|359735629|gb|EHK84586.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
Length = 457
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATHMLQQLAAKGEKLPV 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 358
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 116/207 (56%), Gaps = 2/207 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L ++ + +L+ WA A + L++ L
Sbjct: 20 RFPLLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GQTANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N +++K++K ++ L+ + P E+A LS
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLNKLRKVKRQLSLKLHRDPTVAELATEMELSP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAK 439
++ + R S+D ++GD N +
Sbjct: 200 KKVEAFLSYARHSISLDVQVGDQQNTE 226
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 114/192 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ ++ + +E +++ L +E G+ S A A G++ER L+ L + ++I
Sbjct: 115 EVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRVAKRKMI 174
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 175 RSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 234
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A +R I++P + +++K++ A++ L + P + E+A+ ++ ++++ +
Sbjct: 235 RTIANDSRTIRLPVHIVEKLNKLKGAQRDLKRKLNRNPTEAELAEALEVTPEQLQNLQQV 294
Query: 422 LRIVGSIDQKIG 433
R S++ ++G
Sbjct: 295 HRRSLSLNYRVG 306
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ +A +++++ L G L WA AA +SE L+ +
Sbjct: 20 RVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNR 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L+ G+ E+A+ L+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATIGELAQELELTP 199
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R E R S+D ++GD
Sbjct: 200 KQVREYLERSRQPLSLDVRVGD 221
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 120/212 (56%), Gaps = 9/212 (4%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L+++ G++ + WA G+ + + L L G + ++
Sbjct: 72 EIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGRVAKRKM 131
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 132 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 191
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A AR I++P + +++K++KA++ L + + P + E+A+ ++ ++ +
Sbjct: 192 TRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQTLQRNPTEAELAQELDITADQLHQLLQ 251
Query: 421 CLRIVGSIDQKIG--------DCLNAKYLNIP 444
R S++ ++G D L L +P
Sbjct: 252 LRRQSLSLNHRVGKGEDTELVDLLEDDGLQLP 283
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 124/202 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E ++++ V+ + ++ + +L+++ + + A A ++ER L+ +L G + ++I
Sbjct: 81 EVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRVAKRKMI 140
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 141 RSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQAIT 200
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A+ +SL+ +R E
Sbjct: 201 RTIANDARTIRLPIHIVEKLNKLKKAQRELKQKLQRNPNELELAQALEISLSHLRQLLEL 260
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 261 RRRSLSLNHRVGKGEDTELMDL 282
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 128/225 (56%), Gaps = 6/225 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG-VSERVLKQHLA 291
R+ + +E E+ K VQ L+ +K +L K+ G+ SL+ WA+A+G + L Q +A
Sbjct: 24 RVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLDNTQLTQAIA 83
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+ STY
Sbjct: 84 DGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQEGTIGLHRGVEKFDPTKGYRLSTY 143
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A+++R I++P + +++KI+K ++ L+ + P E+A L+
Sbjct: 144 AYWWIRQAITRAIAQNSRNIRLPIHVTEKLNKIKKTQRQLSQHLKRTPSISELAAALELT 203
Query: 412 LAEIRSASECLRIVGSIDQKIG---DCLNAKYLNIPPFFFPSFAI 453
++ S E R S+++++G D + L P FAI
Sbjct: 204 PNQVISYLEVARQPISLEKQVGEDRDTELGEMLQDPAASPEEFAI 248
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 101/165 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + I+ L +E G + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQLENRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
+ +A AR I++P + +++K++KA++ L G+ P +IE+A+
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQRLGRNPNEIEMAE 261
>gi|302543058|ref|ZP_07295400.1| RNA polymerase principal sigma factor HrdD [Streptomyces
hygroscopicus ATCC 53653]
gi|302460676|gb|EFL23769.1| RNA polymerase principal sigma factor HrdD [Streptomyces
himastatinicus ATCC 53653]
Length = 333
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 10/171 (5%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+S+ V+ ++I +++G AAG S L+ A G ++
Sbjct: 50 AAKEVELSQAVEAGVYAQQILDGEAEDTG----------AAGASREELEAIAAEGARAKD 99
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
I+S LV+ +AR Y G+P DL+Q GN G+++ E+FD+T+G+KFSTY +WIR+
Sbjct: 100 VFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYTKGFKFSTYATWWIRQ 159
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
+I++ +A +R I++P L E+ +I++ ++ HG+ PE +EIA+ G
Sbjct: 160 AITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEHMEIAEELG 210
>gi|118469122|ref|YP_887090.1| RNA polymerase sigma factor [Mycobacterium smegmatis str. MC2 155]
gi|399987104|ref|YP_006567453.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
gi|555680|gb|AAA85642.1| sigma factor MysA [Mycobacterium smegmatis]
gi|118170409|gb|ABK71305.1| sigma factor MysA [Mycobacterium smegmatis str. MC2 155]
gi|399231665|gb|AFP39158.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
Length = 466
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 213 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 272
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 273 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 332
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 333 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 367
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 106/180 (58%), Gaps = 8/180 (4%)
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+A + W ++A ++ + + G + L+K+ LV+ +A+ Y+G G+ DL+Q
Sbjct: 81 QAVAAESWLESANLTPQQWSTIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQ 140
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387
G +G+++ AE+FD+TRG+KFSTY +WIR+ I++ +A AR I++P + ++++I+KA
Sbjct: 141 EGTLGLIRAAEKFDYTRGFKFSTYATWWIRQGITRAIAMQARTIRLPVHIVEKVNRIKKA 200
Query: 388 RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI--------DQKIGDCLNAK 439
+ L+ G+ P + EIA+ + ++R + +++ S+ D +GD + AK
Sbjct: 201 TRQLSQQLGRSPSEDEIAQAVEMDADQLRFVRKAIQLPVSLETPVGREEDTALGDLIQAK 260
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 122/202 (60%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ V+ + ++ ++ LE++ G +A+ A ++E+ L+ L G + ++I
Sbjct: 104 EVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRVAKRKMI 163
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 164 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 223
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A++ +++ ++R +
Sbjct: 224 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEAEMAEFLEMTVQQLRQLQQL 283
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 284 RRQALSLNHRVGKEEDTELMDL 305
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 104/171 (60%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + + L+++SG S A ++ER L+ L G
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + +E+FD +GYKFSTY +W
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 208
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
IR++I++ +A AR I++P + +++K++KA++ L G+ P +IE+A+
Sbjct: 209 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLGRNPSEIELAE 259
>gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [Mycobacterium gilvum PYR-GCK]
gi|315444851|ref|YP_004077730.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
gi|145217006|gb|ABP46410.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
gi|315263154|gb|ADT99895.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 488
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%)
Query: 270 ASLNCWAQAAGVSERVLK----QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLG 319
A L C A +E+ K Q + W CR+ L+++ LV+ LA+ Y G G
Sbjct: 215 AGLYCTQLMAEFAEKGEKLTTAQRRDYMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 274
Query: 320 IPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNR 379
+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP +
Sbjct: 275 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 334
Query: 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
I+K+ + ++ L G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 335 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 389
>gi|384100762|ref|ZP_10001819.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
gi|383841668|gb|EID80945.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
Length = 457
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 358
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 112/207 (54%), Gaps = 2/207 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ L+ +K L++ + + WA A +S L++ L
Sbjct: 20 RFPLLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+++++ +A R I++P +N ++SK++K R+ L+ + P E+A L+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAP 199
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAK 439
+I R S+D +IGD N +
Sbjct: 200 KKIEDYLNYARRSISLDIQIGDQQNTE 226
>gi|111023781|ref|YP_706753.1| RNA polymerase sigma factor [Rhodococcus jostii RHA1]
gi|397737315|ref|ZP_10503987.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
gi|110823311|gb|ABG98595.1| sigma factor, sigma 70 type, probable group 1 (principle sigma
factor) [Rhodococcus jostii RHA1]
gi|396926754|gb|EJI93991.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
Length = 457
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 358
>gi|432341278|ref|ZP_19590642.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
gi|430773693|gb|ELB89357.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
Length = 457
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 33/222 (14%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 144 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELS 196
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 197 DSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 256
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 257 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 316
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 317 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 358
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E + L +E + + W QA G +++ + L G +
Sbjct: 73 AQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGRTAK 132
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 133 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 192
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
++I++ +A AR I++P + +++K++KA++ L + P + E+A
Sbjct: 193 QAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELA 240
>gi|441207686|ref|ZP_20973626.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|440627869|gb|ELQ89674.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 454
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 201 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 260
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 261 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 320
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 321 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 355
>gi|226366217|ref|YP_002784000.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
gi|226244707|dbj|BAH55055.1| RNA polymerase sigma factor SigA [Rhodococcus opacus B4]
gi|254553058|dbj|BAH85841.1| RNA polymerase sigma A factor [Rhodococcus opacus]
Length = 457
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 324
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 325 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 358
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G VQ + L K L ++ + + W E L + ++
Sbjct: 29 RVPLLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDEATLNKIVSQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T+GYKFSTY
Sbjct: 89 GTWAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A+ AR I++P + +++KI+K ++ L+ G+ EI + L
Sbjct: 149 YWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQKFGRNATPAEIGQELDLEP 208
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D ++GD
Sbjct: 209 AQIREYLSIARQPVSLDVRVGD 230
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 115/206 (55%), Gaps = 1/206 (0%)
Query: 229 LNSRGRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN+ GR I E E+S+ +Q +++ + ++ G+ S A+A +S L+
Sbjct: 56 LNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLR 115
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ G + +LI + LV+ +A+ Y G+PF DL+Q GN+G+++ E+F+ RG++
Sbjct: 116 SRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFR 175
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+ I++ +A AR I++P + ++ +++ + L G+ P + E+A+
Sbjct: 176 FSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPTEAELAEA 235
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
G+ + ++R + + S+D +G
Sbjct: 236 LGIKVKKLRMIQQAAALPLSLDVPVG 261
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 127/237 (53%), Gaps = 11/237 (4%)
Query: 208 LPSEALQEGLKQPT-----IFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIK 259
+P + L + +K P SA+ L+ G+ + + NE E+ G QV + I
Sbjct: 1 MPKQKLTQSIKSPAKAKQGTLSADMVRTYLHEIGK-IPLLTNEEEIIYGKQVQHLMGYIT 59
Query: 260 T--TLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRG 317
T TL ++ + + WAQA G+ L L G + ++I++ LV+ +A+ Y+
Sbjct: 60 TQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQK 119
Query: 318 LGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKL 377
+ DL+Q G +G+ + ++FD T+G+KFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 120 RNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHI 179
Query: 378 NREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+++KI+KA++ L G+ E+A+ + ++R R S+D +IGD
Sbjct: 180 TEKLNKIKKAQRQLAQDLGRVATAAEVAETLEIKPEQVRECLSLARQPISLDLRIGD 236
>gi|404421205|ref|ZP_11002928.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659218|gb|EJZ13874.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 481
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 234 YQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 293
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 294 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 353
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ ++ + R S+DQ IGD
Sbjct: 354 KEMDITPEKVLEIQQYAREPISLDQTIGD 382
>gi|424852234|ref|ZP_18276631.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|356666899|gb|EHI46970.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 457
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 33/222 (14%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 144 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELS 196
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 197 DSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 256
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 257 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 316
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 317 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 358
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
H W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 277 HHRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 396
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 397 EELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV---------SERVLK--- 287
K ++ A+ + ++ L K+ GK A LN + AG+ SER K
Sbjct: 263 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT 321
Query: 288 -QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 322 AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 381
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 382 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 441
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 442 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 475
>gi|453073906|ref|ZP_21976704.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
gi|452765392|gb|EME23649.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
Length = 454
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 201 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 260
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 261 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 320
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 321 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 355
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV---------SERVLK--- 287
K ++ A+ + ++ L K+ GK A LN + AG+ SER K
Sbjct: 265 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT 323
Query: 288 -QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 324 AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 383
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 384 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 443
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 444 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 477
>gi|227504950|ref|ZP_03934999.1| RNA polymerase major sigma subunit [Corynebacterium striatum ATCC
6940]
gi|227198459|gb|EEI78507.1| RNA polymerase major sigma subunit [Corynebacterium striatum ATCC
6940]
Length = 465
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 100/170 (58%), Gaps = 6/170 (3%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 203 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 256
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+
Sbjct: 257 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 316
Query: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ L G+ P IE+AK ++ ++ + R S+DQ IGD
Sbjct: 317 GRIQRELLQDLGREPTPIELAKEMDITEEKVLEIQQYAREPISLDQTIGD 366
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 1/208 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E + VQ + L +T L G S WA A ++ L
Sbjct: 17 LQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLD 76
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYK
Sbjct: 77 RQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYK 136
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+ +R I++P + +++K++K ++ L+ G+ E+A+
Sbjct: 137 FSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEV 196
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDC 435
L L ++R + R S+D K+GD
Sbjct: 197 LELPLEQVREYIQMNRQPVSLDVKVGDS 224
>gi|407275560|ref|ZP_11104030.1| RNA polymerase sigma factor [Rhodococcus sp. P14]
Length = 452
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 199 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 258
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 259 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 318
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 319 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 353
>gi|452960731|gb|EME66046.1| RNA polymerase sigma factor [Rhodococcus ruber BKS 20-38]
Length = 451
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 198 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 257
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 258 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 317
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 318 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 352
>gi|383823557|ref|ZP_09978747.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
gi|383338836|gb|EID17195.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
Length = 527
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 282 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 341
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 342 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 401
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 402 MDITPEKVLEIQQYAREPISLDQTIGD 428
>gi|418051032|ref|ZP_12689117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353184689|gb|EHB50213.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 509
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 256 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 315
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 316 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 375
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 376 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 410
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 1/208 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E + VQ + L +T L G S WA A ++ L
Sbjct: 17 LQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLD 76
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYK
Sbjct: 77 REIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYK 136
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+ +R I++P + +++K++K ++ L+ G+ E+A+
Sbjct: 137 FSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEV 196
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDC 435
L L ++R + R S+D K+GD
Sbjct: 197 LELPLEQVREYIQMNRQPVSLDVKVGDS 224
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 112/194 (57%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ ++ LE+ + L +E + + WA A +SE L + G + +
Sbjct: 27 EEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDTAKRRM 86
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 87 VEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 146
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P + +++KI+KA++ L+ +G+ +E+A L+ ++R E
Sbjct: 147 TRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQQYGRAATVMELAAELELTPKQVRDYLE 206
Query: 421 CLRIVGSIDQKIGD 434
R S+D ++GD
Sbjct: 207 KARQPLSLDLRVGD 220
>gi|336283393|gb|AEI29170.1| sigma70 transcriptional factor [Rhodococcus ruber]
Length = 447
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 194 VAQRRDLNWTCRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 253
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 254 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 313
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 314 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 348
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 114/196 (58%), Gaps = 1/196 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E ++ V+ +++ E + L ++ + S A+A G+ SER L L G +
Sbjct: 67 AEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAK 126
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 127 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 186
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A +R I++P + +++K++KA++ L + P + E+A+ G++ +
Sbjct: 187 QAITRTIANDSRTIRLPIHIVEKLNKLKKAQRILKQDLQRQPTEKELAEEMGITRQALHQ 246
Query: 418 ASECLRIVGSIDQKIG 433
+ R S++ ++G
Sbjct: 247 LLQLKRQSLSLNHRVG 262
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 122/208 (58%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + + I+ L+++ G+ + A ++E+ L+ L G
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + +++K++KA++ L G P + E+A + +++ ++
Sbjct: 199 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLGHNPSEAEMAAFLEMTVQQL 258
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNI 443
R + R S++ ++G + + +++
Sbjct: 259 RQLQQLRRQALSLNHRVGKEEDTELMDL 286
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 121/202 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE+E G+ S + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A +S+ ++R +
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMATALEISIQQLRQLQQL 276
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 277 RRQALSLNHRVGKEEDTELMDL 298
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 21/200 (10%)
Query: 248 GVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPL 307
GV V+ L+RI GK WA+ AGV+ L Q + G ++ +I++ L
Sbjct: 183 GVAEVSELKRIMA-----EGK----RRWAELAGVTLEALDQMITEGIQAKDHMIQANLRL 233
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y+ G+ DL+Q G +G+ + E+FD TRGY+FSTY +WIR+ I++ +A
Sbjct: 234 VVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWIRQGITRAIATQ 293
Query: 368 ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
+R I++P + +++KI+KA++ ++ G+ +IA G++ ++R LR+ S
Sbjct: 294 SRTIRLPVHITEKLNKIKKAQRKISQEKGRTASIEDIAAELGMTAPQVREV--LLRVPRS 351
Query: 428 I----------DQKIGDCLN 437
+ D ++GD L+
Sbjct: 352 VSLETKVGNEKDTELGDLLD 371
>gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
Length = 413
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 168 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 227
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 228 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 287
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 288 MDITPEKVLEIQQYAREPISLDQTIGD 314
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 22/240 (9%)
Query: 214 QEGLKQPTIFSAERALNSR-GRRLTIAR-------------NEAEM--SKGVQVVANLER 257
+E L QPT + +R N + G + R NE E+ K VQ + L
Sbjct: 3 EEPLTQPTPKTVDRQANKQVGLSADMVRTYLHEIGKIPLLSNEEEIVYGKQVQQMMLLFE 62
Query: 258 IKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRG 317
++ + S + + WA+A G+ +L ++ G + ++I++ LV+ +A+ Y+
Sbjct: 63 VQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTRAKRKMIEANLRLVVSVAKKYQK 122
Query: 318 LGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKL 377
+ DL+Q G +G+ + ++FD T+G+KFSTY +WIR++I++ +A+ AR I++P +
Sbjct: 123 RNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHI 182
Query: 378 NREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL---RIVGSIDQKIGD 434
+++KI+KA++ L+ G+ EIA + ++R ECL R S+D +IGD
Sbjct: 183 TEKLNKIKKAQRQLSQDLGRVATVAEIAHELKIKTDQVR---ECLSLSRQPISLDLRIGD 239
>gi|375142599|ref|YP_005003248.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823220|gb|AEV76033.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 528
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 277 QRRDMSWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 396
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 397 EELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|404447267|ref|ZP_11012342.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
gi|403649131|gb|EJZ04562.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
Length = 459
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 214 WVCRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 273
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 274 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 333
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 334 MDITPEKVLEIQQYAREPISLDQTIGD 360
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 227 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 286
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 287 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 346
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 347 MDITPEKVLEIQQYAREPISLDQTIGD 373
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 275 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 334
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 335 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 394
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 395 MDITPEKVLEIQQYAREPISLDQTIGD 421
>gi|374608192|ref|ZP_09680991.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553724|gb|EHP80311.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 498
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 251 MSWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 310
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 311 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 370
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ ++ + R S+DQ IGD
Sbjct: 371 KEMDITPEKVLEIQQYAREPISLDQTIGD 399
>gi|406980685|gb|EKE02255.1| hypothetical protein ACD_20C00407G0008 [uncultured bacterium]
Length = 364
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 96/160 (60%), Gaps = 8/160 (5%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ AE+FDH RGYKFSTY
Sbjct: 123 GQIAKRKLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIRAAEKFDHERGYKFSTYA 182
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K++K + L + P + EIA+ +++
Sbjct: 183 TWWIRQAITRAIADQARTIRIPVHMVETINKLKKITRKLAQDLSRKPTEEEIAEAMAITI 242
Query: 413 AEIRS----ASECLRIVGSI----DQKIGDCLNAKYLNIP 444
++R A E L + I D ++GD + K + P
Sbjct: 243 NKLREIIKVAQEPLSLETPIGKEEDSRLGDFIEDKEADAP 282
>gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397277|gb|AAS05137.1| SigA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 509
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDPGREPTPEELAKE 383
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 384 MDITPEKVLEIQQYAREPISLDQTIGD 410
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 7/178 (3%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
C +AAG+ L+ + G ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+
Sbjct: 109 CEKKAAGIECPELEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 168
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 169 IRAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLHQ 228
Query: 394 SHGKYPEDIEIAKYTGLSLAEI----RSASECLRI---VGSIDQKIGDCLNAKYLNIP 444
G+ P EIAK L + + R A E + + +G D +GD + +P
Sbjct: 229 DLGREPTPEEIAKEMDLPVERVVEIQRIAQEPVSLQSPIGEEDSDLGDFIEDADAVVP 286
>gi|108799152|ref|YP_639349.1| RNA polymerase sigma factor [Mycobacterium sp. MCS]
gi|119868267|ref|YP_938219.1| RNA polymerase sigma factor [Mycobacterium sp. KMS]
gi|108769571|gb|ABG08293.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694356|gb|ABL91429.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
Length = 480
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 227 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 286
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 287 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 346
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 347 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 381
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 221 VAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 280
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 281 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 340
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 341 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 375
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 103/180 (57%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 258 PVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|269929031|ref|YP_003321352.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
gi|269788388|gb|ACZ40530.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 359
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 88/156 (56%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG L Q + RE+LI+ LV+ +A+ YR G+P DL+Q GN+G++ E
Sbjct: 107 AGEDSEELHQIIERAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVE 166
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
R+D GY+FSTY +WIR++I + VA +R I++P ++ ISK+++ L HG+
Sbjct: 167 RYDPELGYRFSTYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRP 226
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
D E+A+ L + I A + S+D+ IG+
Sbjct: 227 ATDQELAQALDLDVERIEQARSAIPRTSSLDKPIGE 262
>gi|126434760|ref|YP_001070451.1| RNA polymerase sigma factor [Mycobacterium sp. JLS]
gi|126234560|gb|ABN97960.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 480
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 227 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 286
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 287 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 346
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 347 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 381
>gi|422349726|ref|ZP_16430615.1| sigma-70 family RNA polymerase sigma factor [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404657935|gb|EKB30815.1| sigma-70 family RNA polymerase sigma factor [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 650
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 90/143 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y G+ +DL+Q GN+G+++ ++F++ RGYKFSTY +W+R+S
Sbjct: 415 MIEANLRLVISIAKGYVNRGLAMTDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWVRQS 474
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
+++ VA I+IP + +KI++ ++ HG+ P + E+A L LA+++ +
Sbjct: 475 VTRAVADFGNTIRIPVHMTESYNKIRRHKQHFLQEHGRQPTEQELADLAELPLAKVQLLT 534
Query: 420 ECLRIVGSIDQKIGDCLNAKYLN 442
+ +R V SID IGD +A L+
Sbjct: 535 QAMRGVESIDAPIGDDEDATKLD 557
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGVS-ERVLKQHLA----FGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ ER K+ L G +++LI+
Sbjct: 128 VPLLTAAEEIDLAMKIEAGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIE 187
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 188 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 247
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----A 418
+A AR I+IP + I+K+ + ++ L G+ P EI K GL +R +
Sbjct: 248 AIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKIS 307
Query: 419 SECLRIVGSI----DQKIGDCLNAKYLNIPP 445
E + + I D ++GD + +PP
Sbjct: 308 QEPVSLETPIGEEEDSQLGDFIEDDAAVVPP 338
>gi|288574624|ref|ZP_06392981.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570365|gb|EFC91922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 381
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 96/157 (61%), Gaps = 8/157 (5%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD++RGYKFSTY +W
Sbjct: 144 AKSQLIEANLRLVVSIAKKYMGRGMLFLDLIQEGNLGLIRAVEKFDYSRGYKFSTYATWW 203
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ +A + L S G+ P D EIA G+ A++
Sbjct: 204 IRQAITRAIADQARTIRIPVHMVETINKVMRASRNLVQSLGREPTDEEIAAEMGIEPAKV 263
Query: 416 ----RSASECLRIVGSI----DQKIGDCLNAKYLNIP 444
+ A E + + + D ++GD + K + P
Sbjct: 264 VQIRKVAQEPISLESPVGEEDDSELGDFIEDKDMISP 300
>gi|397679869|ref|YP_006521404.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
gi|395458134|gb|AFN63797.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
Length = 380
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 135 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 194
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 195 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 254
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 255 MDITPEKVLEIQQYAREPISLDQTIGD 281
>gi|365870934|ref|ZP_09410475.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|414583598|ref|ZP_11440738.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|420880896|ref|ZP_15344263.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420885019|ref|ZP_15348379.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420890160|ref|ZP_15353508.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420895746|ref|ZP_15359085.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899547|ref|ZP_15362879.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420906223|ref|ZP_15369541.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420972712|ref|ZP_15435905.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|421050011|ref|ZP_15513005.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|363994737|gb|EHM15955.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|392080782|gb|EIU06608.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392085805|gb|EIU11630.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087908|gb|EIU13730.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392095058|gb|EIU20853.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392100894|gb|EIU26685.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392104127|gb|EIU29913.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392118750|gb|EIU44518.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392165604|gb|EIU91290.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392238614|gb|EIV64107.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
Length = 467
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 222 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 281
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 282 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 341
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 342 MDITPEKVLEIQQYAREPISLDQTIGD 368
>gi|169630092|ref|YP_001703741.1| RNA polymerase sigma factor [Mycobacterium abscessus ATCC 19977]
gi|418247851|ref|ZP_12874237.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|418421111|ref|ZP_12994287.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709752|ref|ZP_14237220.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|419716769|ref|ZP_14244164.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|420864405|ref|ZP_15327795.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869196|ref|ZP_15332578.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873640|ref|ZP_15337017.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420910618|ref|ZP_15373930.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917070|ref|ZP_15380374.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922235|ref|ZP_15385532.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927897|ref|ZP_15391179.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932113|ref|ZP_15395388.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420937966|ref|ZP_15401235.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942371|ref|ZP_15405628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420947419|ref|ZP_15410669.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952630|ref|ZP_15415874.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956799|ref|ZP_15420036.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961817|ref|ZP_15425042.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967506|ref|ZP_15430710.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420978237|ref|ZP_15441415.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983622|ref|ZP_15446789.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420988844|ref|ZP_15452000.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|420992758|ref|ZP_15455905.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998610|ref|ZP_15461747.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003047|ref|ZP_15466171.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421008103|ref|ZP_15471214.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013590|ref|ZP_15476671.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018540|ref|ZP_15481598.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024704|ref|ZP_15487748.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029833|ref|ZP_15492865.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035203|ref|ZP_15498223.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421039567|ref|ZP_15502576.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421043995|ref|ZP_15506996.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|169242059|emb|CAM63087.1| Probable RNA polymerase sigma factor RpoD (Sigma-A) [Mycobacterium
abscessus]
gi|353452344|gb|EHC00738.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|363997578|gb|EHM18789.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|382940330|gb|EIC64654.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|382943633|gb|EIC67947.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|392068666|gb|EIT94513.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071380|gb|EIT97226.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072668|gb|EIT98509.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392112612|gb|EIU38381.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392121210|gb|EIU46976.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132071|gb|EIU57817.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135130|gb|EIU60871.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136872|gb|EIU62609.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143481|gb|EIU69206.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149798|gb|EIU75512.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392154449|gb|EIU80155.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157942|gb|EIU83639.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392166511|gb|EIU92196.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168618|gb|EIU94296.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392183123|gb|EIV08774.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392185542|gb|EIV11191.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186422|gb|EIV12069.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194505|gb|EIV20125.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199556|gb|EIV25166.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201938|gb|EIV27536.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208415|gb|EIV33989.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211501|gb|EIV37067.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224585|gb|EIV50105.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392224659|gb|EIV50178.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392225935|gb|EIV51450.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392237847|gb|EIV63341.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|392249282|gb|EIV74757.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250013|gb|EIV75487.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253698|gb|EIV79166.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
Length = 467
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 222 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 281
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 282 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 341
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 342 MDITPEKVLEIQQYAREPISLDQTIGD 368
>gi|443673287|ref|ZP_21138355.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414102|emb|CCQ16693.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 476
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 223 VAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 282
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 283 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 342
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 343 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 377
>gi|400536812|ref|ZP_10800346.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
gi|400329825|gb|EJO87324.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
Length = 505
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 260 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 319
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 320 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 379
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 380 MDITPEKVLEIQQYAREPISLDQTIGD 406
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 96/160 (60%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
W Q + K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 156 TWKQQSKAYLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 215
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 216 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQ 275
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ P + EIA +++ ++R ++ ++ S++ IG
Sbjct: 276 EMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 315
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 285 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 344
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 345 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 404
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 405 MDITPEKVLEIQQYAREPISLDQTIGD 431
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|357021629|ref|ZP_09083860.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
gi|356479377|gb|EHI12514.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
Length = 504
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 259 WICRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 318
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 319 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 378
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 379 MDITPEKVLEIQQYAREPISLDQTIGD 405
>gi|120403451|ref|YP_953280.1| RNA polymerase sigma factor [Mycobacterium vanbaalenii PYR-1]
gi|119956269|gb|ABM13274.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 478
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 233 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 292
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 293 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 352
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 353 MDITPEKVLEIQQYAREPISLDQTIGD 379
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 115/208 (55%), Gaps = 1/208 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E + VQ + L +T L G S WA A ++ L
Sbjct: 17 LQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLD 76
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYK
Sbjct: 77 RQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEKFDPSKGYK 136
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A+ +R I++P + +++K++K ++ L+ G+ E+A+
Sbjct: 137 FSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEV 196
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGDC 435
L L ++R + R S+D K+GD
Sbjct: 197 LELPLEQVREYIQMNRQPVSLDVKVGDS 224
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893936|gb|EFG73705.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 503
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 258 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 317
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 318 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 377
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 378 MDITPEKVLEIQQYAREPISLDQTIGD 404
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|386005579|ref|YP_005923858.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
gi|380726067|gb|AFE13862.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
Length = 324
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 79 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 138
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 139 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 198
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 199 MDITPEKVLEIQQYAREPISLDQTIGD 225
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGGRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|417749579|ref|ZP_12397971.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458801|gb|EGO37758.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 496
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 370
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 371 MDITPEKVLEIQQYAREPISLDQTIGD 397
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 237 QRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 296
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 297 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 356
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 357 EELAKEMDITPEKVLEIQQYAREPISLDQTIGD 389
>gi|440778267|ref|ZP_20957033.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721370|gb|ELP45505.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 509
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 383
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 384 MDITPEKVLEIQQYAREPISLDQTIGD 410
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 114/199 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 270 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 329
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
R++LI + +V+ +A+ Y+G G+ DLLQ G++G++ E+F G +F++Y
Sbjct: 330 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAY 389
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+++ K + +H+R I++P + + K+++A++ P EIA+ G+++
Sbjct: 390 WWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIE 449
Query: 414 EIRSASECLRIVGSIDQKI 432
+++ R+ S+ Q +
Sbjct: 450 KLQRLLLHTRMPLSMQQPV 468
>gi|392416014|ref|YP_006452619.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615790|gb|AFM16940.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 496
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 370
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 371 MDITPEKVLEIQQYAREPISLDQTIGD 397
>gi|373470015|ref|ZP_09561166.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371763329|gb|EHO51816.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 340
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 10/204 (4%)
Query: 252 VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFL 311
VA + IK L KE GK LN + +++++ R+++ +S LV+ +
Sbjct: 110 VAIEDPIKMYL-KEIGKIPLLNV-DEEMNLAKKICAPDENVRIEARKKMAESNLRLVVSI 167
Query: 312 ARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGI 371
A+ Y G G+ DL+Q GN+G+L+ E+FD+ +G+KFSTY +WIR++I++ +A AR I
Sbjct: 168 AKRYMGRGMQLLDLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQAITRSIADQARTI 227
Query: 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----ASECLRIVGS 427
+IP + I+++ K ++ L G+ P+ IE+AK G+ +A++R A E + +
Sbjct: 228 RIPVHMVETINRLIKVQRKLVQELGREPKPIEVAKVMGIPVAKVREIMSFALEPVSMETP 287
Query: 428 I----DQKIGDCLNAKYLNIPPFF 447
I D +GD L IP F
Sbjct: 288 IGDEDDSHLGDFLQDANAKIPVNF 311
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 114/202 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+++ +E + + + A A G +E L+Q L + +I
Sbjct: 175 EIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARAAKRRMI 234
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR+ I+
Sbjct: 235 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGIT 294
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P ++E+A ++ ++R+ +
Sbjct: 295 RTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVAAALEMTPEQLRTLQQV 354
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + + +
Sbjct: 355 QRKSLSLNHRVGKGEDTELMEL 376
>gi|374854339|dbj|BAL57223.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
gi|374855178|dbj|BAL58041.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
Length = 405
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 91/149 (61%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + GW RE LI + LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD+ RG
Sbjct: 157 LRKLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQEGNIGLIRATKKFDYRRG 216
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+++++ +A R I++P + +I+K+ + + LT G+ P E+A
Sbjct: 217 HKFSTYATWWIRQAVTRAIADQGRTIRVPVHMGDQINKLLRVQHQLTQKLGREPTIDELA 276
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ G+ ++ + + R S++ D
Sbjct: 277 EALGVPPRKVENMIQVARRPLSLETPTDD 305
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV-LKQHLAFGWYCREELIKSTRPL 307
V ++ E I + E G+ AS SER+ L + + G RE LI++ L
Sbjct: 116 VNLLTAQEEIMLAQQVERGEQASERLQKGDYAPSERLQLHRWVQEGQAARERLIQANLRL 175
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y G G+ DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++++A
Sbjct: 176 VVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYATWWIRQAITRVIADQ 235
Query: 368 ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
+R I++P + I+++ +A + + G+ P EIA G+ + ++R E R S
Sbjct: 236 SRTIRLPVHVGETINRVMRASNRIQQTTGRDPTPDEIALELGIPVEKVRRVLEAARQTIS 295
Query: 428 IDQKIG 433
++ IG
Sbjct: 296 LETPIG 301
>gi|118465794|ref|YP_882772.1| RNA polymerase sigma factor [Mycobacterium avium 104]
gi|254776035|ref|ZP_05217551.1| RNA polymerase sigma factor [Mycobacterium avium subsp. avium ATCC
25291]
gi|118167081|gb|ABK67978.1| sigma factor MysA [Mycobacterium avium 104]
Length = 496
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 370
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 371 MDITPEKVLEIQQYAREPISLDQTIGD 397
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 114/199 (57%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 259 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 318
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
R++LI + +V+ +A+ Y+G G+ DLLQ G++G++ E+F G +F++Y
Sbjct: 319 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAY 378
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR+++ K + +H+R I++P + + K+++A++ P EIA+ G+++
Sbjct: 379 WWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIE 438
Query: 414 EIRSASECLRIVGSIDQKI 432
+++ R+ S+ Q +
Sbjct: 439 KLQRLLLHTRMPLSMQQPV 457
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 78 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 137
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 138 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 197
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
++I++ +A AR I++P + +++K++KA++ L + P + E+A
Sbjct: 198 QAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELA 245
>gi|108805426|ref|YP_645363.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108766669|gb|ABG05551.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 282
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 84/139 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R LI+S LV+ +A+ YRG G+PF DL+Q GN G+++ E+FD G +FSTY +W
Sbjct: 41 ARRRLIESNLRLVVAIAKRYRGRGVPFEDLIQEGNAGLIRAVEKFDPEMGNRFSTYATWW 100
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ VA R +++P + + ++++A AL+ G+ P D E+A G S E
Sbjct: 101 IRQAVTRAVADQGRAVRLPAHVVDSVYRLRRAESALSVELGREPTDEEVAGRLGTSPEEA 160
Query: 416 RSASECLRIVGSIDQKIGD 434
R E + + SI ++GD
Sbjct: 161 RRLREVSQPISSISARLGD 179
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
F W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 207 FNWIIRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 266
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 267 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 326
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ ++ + R S+DQ IGD
Sbjct: 327 KEMDITPEKVLEIQQYAREPISLDQTIGD 355
>gi|333991084|ref|YP_004523698.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487052|gb|AEF36444.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 512
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 265 MAWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 324
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 325 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 384
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ ++ + R S+DQ IGD
Sbjct: 385 REMDITPEKVLEIQQYAREPISLDQTIGD 413
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 28/225 (12%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
RL R+EA ++G +Q + + TL G SL WA+AAGV LK LA
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 293 G---W-------------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGN 330
G W +E +IK+ LV+ +A+ Y+ G+ DL+Q G
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGT 209
Query: 331 VGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKA 390
+G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++
Sbjct: 210 LGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRK 269
Query: 391 LTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI--DQKIG 433
++ G+ P +IA+ ++ ++R LR+ S+ + K+G
Sbjct: 270 ISQEKGRTPTIEDIARELEMTSPQVREV--LLRVPRSVSLETKVG 312
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERVLKQHLAFGWYCREEL 300
E E++ V+ + + E + L++ + + WAQA ++ ER L+ L G + ++
Sbjct: 82 EIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGRCAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 201
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
++ +A AR I++P + +++K++KA++ L + + P + E+A+ +S
Sbjct: 202 TRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQNLQRNPNEDELAQELEVS 252
>gi|227833276|ref|YP_002834983.1| RNA polymerase sigma factor [Corynebacterium aurimucosum ATCC
700975]
gi|262184260|ref|ZP_06043681.1| RNA polymerase sigma factor [Corynebacterium aurimucosum ATCC
700975]
gi|227454292|gb|ACP33045.1| RNA polymerase sigma factor A [Corynebacterium aurimucosum ATCC
700975]
Length = 485
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 89/142 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 245 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 304
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P +E+AK ++
Sbjct: 305 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPLELAKEMDITE 364
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 365 EKVLEIQQYAREPISLDQTIGD 386
>gi|374853841|dbj|BAL56738.1| RNA polymerase primary sigma factor [uncultured prokaryote]
Length = 554
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 78/119 (65%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ LI++ LV+ +A+ Y G GIPF DL+Q GN+G+L+ E+FDHT+GYKFSTY +W
Sbjct: 288 AKKALIRANLRLVVSVAKRYMGRGIPFVDLIQEGNIGLLRAVEKFDHTKGYKFSTYATWW 347
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
IR++IS+ +A AR I+IP + I+++ + ++ L G+ P EIA L L E
Sbjct: 348 IRQAISRAIADQARTIRIPVHMFETINRLMRIQRRLVQELGREPTSEEIALEMDLLLPE 406
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 217 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 276
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 277 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 336
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 337 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 367
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 114/203 (56%), Gaps = 3/203 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L+ + G S A AAG+ VL++ L
Sbjct: 57 RVPLLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAAGLRPEVLRKRLH 116
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 117 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 176
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR+ I++ +A +R I++P + ++K++K ++ L+ G+ P E+A L
Sbjct: 177 AYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSELAVAVELP 236
Query: 412 LAEIRSASECLRIVGSIDQKIGD 434
E++ R S++ K+GD
Sbjct: 237 EEEVKDLLCRARQPVSLETKVGD 259
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 250 QRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 309
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 310 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 369
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 370 EELAKEMDITPEKVLEIQQYAREPISLDQTIGD 402
>gi|359419328|ref|ZP_09211286.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
gi|358244735|dbj|GAB09355.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
Length = 508
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L++ G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 259 RALREVAYDGTKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 318
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 319 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 378
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK ++ ++ + R S+DQ IGD
Sbjct: 379 LAKEMDITPEKVLEIQQYAREPISLDQTIGD 409
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 72 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 131
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 132 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 191
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
++I++ +A AR I++P + +++K++KA++ L + P + E+A
Sbjct: 192 QAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELA 239
>gi|433647336|ref|YP_007292338.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297113|gb|AGB22933.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 518
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 273 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 332
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 333 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 392
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 393 MDITPEKVLEIQQYAREPISLDQTIGD 419
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 1/228 (0%)
Query: 220 PTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA 278
PT S L GR L E ++ VQ + +E ++ L + + + A +
Sbjct: 4 PTTDSVRSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATS 63
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
G +E L+ + G +++++ + LV+ +A+ Y+ + F DLLQ G +G+ +G E
Sbjct: 64 LGQNEAELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIE 123
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD +GYK STYV +WI +SI++ VA +R I++P +N +++KI++ ++ L+ S G+
Sbjct: 124 KFDPNKGYKLSTYVYWWITQSITRAVADKSRTIRLPIHINEKLNKIRRVQQQLSQSLGRP 183
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPPF 446
P EIA+ LS +IR + + + S+++++GD ++ +I P
Sbjct: 184 PVVAEIAESLNLSPNQIREYLQISKPLVSLEKRVGDEGESELADILPM 231
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+ + E + L+ + + S WAQA G+ +ER L+ L G + ++
Sbjct: 79 EIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGRAAKRKM 138
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 139 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 198
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 199 TRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEQELAQ 244
>gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 503
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 286 LKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
L+Q+L++ G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 252 LRQNLSWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 311
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 312 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 371
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK +S ++ + R S+DQ IGD
Sbjct: 372 EELAKEMDISPEKVLEIQQYAREPISLDQTIGD 404
>gi|319949012|ref|ZP_08023109.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
gi|319437300|gb|EFV92323.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
Length = 460
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 33/222 (14%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA----------------AGVS 282
AR +AE++ A+ + ++ L K+ GK A LN + A V+
Sbjct: 147 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATWYMAQVT 199
Query: 283 ERVLK----QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
ER K Q F W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 200 ERGEKLTTAQRRDFKWIERDGVRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 259
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 260 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 319
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 320 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 361
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 282
Query: 416 RSASECLRIVGSIDQKIGD 434
+ E + S++ IG+
Sbjct: 283 KEILEAAKETISLESPIGE 301
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 231 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 284
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+
Sbjct: 285 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 344
Query: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ L G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 345 GRIQRELLQDLGREPTPQELAKEMDITEEKVMEIQQYAREPISLDQTIGD 394
>gi|428780485|ref|YP_007172271.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694764|gb|AFZ50914.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 328
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 5/231 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLE 263
+P+ L + +P IFSA+ L+ GR L E + K VQ + L K LE
Sbjct: 1 MPTAKLDKNNDKP-IFSADMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMGLIEQKEELE 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE + + W + ++ L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 KELEREVTEEEWVEKTELTSAELQKAIKDGNRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+ AR I++P + +++K
Sbjct: 120 DLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNK 179
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
I+K ++ L G+ EIAK L ++IR R S+D ++GD
Sbjct: 180 IKKVQRELAQKLGRNATPTEIAKELELEPSQIREYLSIARQPISLDVRVGD 230
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 230 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 283
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+
Sbjct: 284 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 343
Query: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ L G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 344 GRIQRELLQDLGREPTPQELAKEMDITEEKVMEIQQYAREPISLDQTIGD 393
>gi|443490424|ref|YP_007368571.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
gi|442582921|gb|AGC62064.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
Length = 509
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 383
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 384 MDITPEKVLEIQQYAREPISLDQTIGD 410
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 282
Query: 416 RSASECLRIVGSIDQKIGD 434
+ E + S++ IG+
Sbjct: 283 KEILEAAKETISLESPIGE 301
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 120/202 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + L +K L ++ G++A+L A A ++E+ L+ + G + ++I
Sbjct: 80 EIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQVAKSKMI 139
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +G+KFSTY +WIR+ I+
Sbjct: 140 RSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKGFKFSTYAYWWIRQGIT 199
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A +R I++P + +++K++K ++ L + P + E+A ++L +++
Sbjct: 200 RAIANDSRTIRLPIHIVEKLNKLKKLQRHLKKELQRNPTEQELADALEITLEQLQMLQRA 259
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
+ S+++++G + + L++
Sbjct: 260 RQQALSLNRRVGREEDTELLDL 281
>gi|183982025|ref|YP_001850316.1| RNA polymerase sigma factor [Mycobacterium marinum M]
gi|183175351|gb|ACC40461.1| RNA polymerase sigma factor SigA [Mycobacterium marinum M]
Length = 501
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 256 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 315
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 316 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 375
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 376 MDITPEKVLEIQQYAREPISLDQTIGD 402
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 11/197 (5%)
Query: 239 ARNEAEMSKGVQV-VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR 297
A E E++K ++ + ERI+ T +E G+ S R LK + G +
Sbjct: 179 AEEEVELAKRIEAGLYAAERIRVT--EEEGEKLSTQM--------RRDLKWIVRDGERAK 228
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR
Sbjct: 229 SHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIR 288
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK +S ++
Sbjct: 289 QAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLE 348
Query: 418 ASECLRIVGSIDQKIGD 434
+ R S+DQ IGD
Sbjct: 349 IQQYAREPISLDQTIGD 365
>gi|118618666|ref|YP_906998.1| RNA polymerase sigma factor [Mycobacterium ulcerans Agy99]
gi|118570776|gb|ABL05527.1| RNA polymerase sigma factor SigA [Mycobacterium ulcerans Agy99]
Length = 501
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 256 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 315
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 316 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 375
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 376 MDITPEKVLEIQQYAREPISLDQTIGD 402
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 121/221 (54%), Gaps = 6/221 (2%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E ++ VQ++ NL K L + +L WA + VL+ L+ G ++++
Sbjct: 49 QEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQAKQKM 108
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G ++FD GYKFSTY +WIR+ I
Sbjct: 109 IQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKFDPALGYKFSTYAYWWIRQGI 168
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A+ R I++P + +++KI++ ++ L+ G+ P EIA L+ +++R E
Sbjct: 169 TRAIAQQGRTIRLPIHVFEKLNKIKRVQRELSQQLGRVPTTAEIANALSLTPSQVR---E 225
Query: 421 CL---RIVGSIDQKIGDCLNAKYLNIPPFFFPSFAIWEWEE 458
CL R S++ ++G+ + + +I PS + EE
Sbjct: 226 CLYLARQPFSLEARVGEQQDTELQDILEDDGPSPEDYAVEE 266
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGV-----SERVLKQHLAFGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ +R L + A G +++LI+
Sbjct: 92 VPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRVEAVGLDAKQQLIE 151
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 152 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 211
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----A 418
+A AR I+IP + I+K+ + ++ L + P EI + GLS +R +
Sbjct: 212 AIADQARTIRIPVHMVETINKLVRIQRQLLQDLNRDPTPEEIGEKMGLSAERVREIQKIS 271
Query: 419 SECLRIVGSI----DQKIGDCLNAKYLNIPP 445
E + + I D ++GD + +PP
Sbjct: 272 QEPVSLETPIGEEEDSQLGDFIEDDSAVVPP 302
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + G RE L + LV+ +A+ Y G G+ DL+Q GNVG+++ E+F++T+G
Sbjct: 153 LRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEKFNYTKG 212
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ +A AR I+IP + I+++ + + LT +G+ P D E+A
Sbjct: 213 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELA 272
Query: 406 KYTGLSLAEIRS----ASECLRIVGSI----DQKIGDCLNAKYLNIP 444
+ L++ ++RS + E + + + D ++GD L + L P
Sbjct: 273 QALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLGDFLPDEKLEAP 319
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 155 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 214
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 215 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 274
Query: 416 RSASECLRIVGSIDQKIGD 434
+ E + S++ IG+
Sbjct: 275 KEILEAAKETISLESPIGE 293
>gi|309792450|ref|ZP_07686915.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225522|gb|EFO79285.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 311
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 10/184 (5%)
Query: 261 TLEKESGKAASLNCWAQAA---------GVSER-VLKQHLAFGWYCREELIKSTRPLVLF 310
T ++E AA + +AA SER L+Q + G R +LI S LV+
Sbjct: 29 TFDQEQHLAAQIEAGREAARRLADEHPFTPSERWRLEQQVHAGANARAQLINSNLRLVVS 88
Query: 311 LARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARG 370
+AR Y+G G+ DL+Q G++G+++ ++FD +RG KFSTY YWIR+S+ + +A H R
Sbjct: 89 IARRYQGHGLSLLDLIQEGSLGLMRAVDKFDPSRGLKFSTYATYWIRQSVGRAIADHGRT 148
Query: 371 IKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430
+++P L +S++ +AR+ LT + P E+A G++ ++ A + S+D+
Sbjct: 149 VRLPVHLGERLSRLARARQRLTQRLDRDPTPEEVADELGITTDQVTRAEQAALTPASLDE 208
Query: 431 KIGD 434
D
Sbjct: 209 THSD 212
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 97/158 (61%), Gaps = 12/158 (7%)
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREELIKSTRPLV 308
Q+ +L+R T LE WAQA G+ +ER L+ L G + ++I+S LV
Sbjct: 98 QLQIDLQRPPTKLE-----------WAQAMGLQNERQLENRLYRGRSAKRKMIRSNLRLV 146
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I++ +A A
Sbjct: 147 VSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDA 206
Query: 369 RGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
R I++P + +++K++KA++ L + P + E+A+
Sbjct: 207 RTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEKELAQ 244
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + L K L + + + W + + E+ L Q L
Sbjct: 34 RIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 94 GQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPTKGYKFSTYG 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI++ ++ LT G+ P ++IA+ L
Sbjct: 154 YWWIRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVDIAEELSLDP 213
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+IR R S++ ++G
Sbjct: 214 KQIRDYLLLARQPVSLELRVG 234
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 201 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|374989227|ref|YP_004964722.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
gi|297159879|gb|ADI09591.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
Length = 333
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 83/134 (61%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A AAG S L+ A G ++ I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 APAAGASRGELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
E+FD+T+G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ H
Sbjct: 137 AVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREH 196
Query: 396 GKYPEDIEIAKYTG 409
G+ PE EIA G
Sbjct: 197 GREPEHSEIAAELG 210
>gi|451338995|ref|ZP_21909521.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
gi|449418374|gb|EMD23965.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
Length = 466
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 217 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 276
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 277 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 336
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 337 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 367
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 116/201 (57%), Gaps = 2/201 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ ++ VQ + + K L ++ + +L WA + E VL Q L+
Sbjct: 34 RVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 94 GQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A+ +R I++P + +++KI+ ++ L+ G EIA+ L
Sbjct: 154 YWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEP 213
Query: 413 AEIRSASECLRIVGSIDQKIG 433
++IR + +R S+D +IG
Sbjct: 214 SQIREYLQLVRQPVSLDMRIG 234
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGV-----SERVLKQHLAFGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ +R L + A G +++LI+
Sbjct: 103 VPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRVEAVGLDAKQQLIE 162
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 163 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 222
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----A 418
+A AR I+IP + I+K+ + ++ L + P EI + GLS +R +
Sbjct: 223 AIADQARTIRIPVHMVETINKLVRIQRQLLQDLNRDPTPEEIGEKMGLSAERVREIQKIS 282
Query: 419 SECLRIVGSI----DQKIGDCLNAKYLNIPP 445
E + + I D ++GD + +PP
Sbjct: 283 QEPVSLETPIGEEEDSQLGDFIEDDSAVVPP 313
>gi|421189689|ref|ZP_15647003.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|421190853|ref|ZP_15648137.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
gi|399972779|gb|EJO06978.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|399973549|gb|EJO07714.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
Length = 458
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P EI GL+ ++R + + S++ IG+
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEIGAEMGLTADKVREIQKIAQEPVSLETPIGE 358
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I
Sbjct: 223 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 282
Query: 416 RSASECLRIVGSIDQKIGD 434
+ E + S++ IG+
Sbjct: 283 KEILEAAKETISLESPIGE 301
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ SK VQ + L++ K TL+K+ S A+ +SE +K
Sbjct: 24 RVPLLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSEIEVKDIFQQ 83
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++ + LV+ +A+ Y+ + DL+Q G++G+ +G E+FD TRGYKFSTY
Sbjct: 84 GTQAKQKMMVANLRLVVAIAKKYQRRNLELMDLIQEGSLGLERGVEKFDPTRGYKFSTYA 143
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WI +++++ +++ +R I++P + +++K +K ++ L+ + P EIA+ L+
Sbjct: 144 YWWISQAMTRAISQQSRTIRLPIHITEKLNKFKKVQRELSQKLKRSPSADEIAEKMKLNP 203
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+IR R S+D+++GD
Sbjct: 204 AQIRELLMISRQPASLDKQVGD 225
>gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 476
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 227 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 286
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 287 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 346
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 347 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 377
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 99/160 (61%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+ AG+S + + G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 170 LWAEIAGMSVEEIVEIQNEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 229
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++
Sbjct: 230 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQ 289
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ G+ + +IAK +++A+IR + S+D K+G
Sbjct: 290 TQGRTAKAEDIAKELDMTVAQIREVLLKVPRSVSLDTKVG 329
>gi|167750934|ref|ZP_02423061.1| hypothetical protein EUBSIR_01919 [Eubacterium siraeum DSM 15702]
gi|167656113|gb|EDS00243.1| RNA polymerase sigma factor RpoD [Eubacterium siraeum DSM 15702]
gi|291557421|emb|CBL34538.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum
V10Sc8a]
Length = 358
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 84/130 (64%), Gaps = 3/130 (2%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 120 YARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 179
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K++K L + +G P EIA G+++
Sbjct: 180 WIRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDR 239
Query: 415 IRSASECLRI 424
+R E LRI
Sbjct: 240 VR---EILRI 246
>gi|238063497|ref|ZP_04608206.1| rpoD family RNA polymerase, sigma-70 subunit [Micromonospora sp.
ATCC 39149]
gi|237885308|gb|EEP74136.1| rpoD family RNA polymerase, sigma-70 subunit [Micromonospora sp.
ATCC 39149]
Length = 534
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
GW R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 287 LGWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 346
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 347 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 406
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ ++ + R S+DQ IGD
Sbjct: 407 KEMDITPEKVLEIQQYAREPISLDQTIGD 435
>gi|291531112|emb|CBK96697.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum 70/3]
Length = 358
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 84/130 (64%), Gaps = 3/130 (2%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 120 YARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 179
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K++K L + +G P EIA G+++
Sbjct: 180 WIRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDR 239
Query: 415 IRSASECLRI 424
+R E LRI
Sbjct: 240 VR---EILRI 246
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 14/211 (6%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGVS-ERVLKQHLA----FGWYCREELIK 302
V ++ E I ++ E+G AA A+ G+ ER K+ L G +++LI+
Sbjct: 118 VPLLTAAEEIDLAMKIEAGVAAMEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIE 177
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 178 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 237
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----A 418
+A AR I+IP + I+K+ + ++ L G+ P EI K GL +R +
Sbjct: 238 AIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKIS 297
Query: 419 SECLRIVGSI----DQKIGDCLNAKYLNIPP 445
E + + I D ++GD + +PP
Sbjct: 298 QEPVSLETPIGEEEDSQLGDFIEDDAAVVPP 328
>gi|390564968|ref|ZP_10245695.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
gi|390171779|emb|CCF85025.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
Length = 329
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 83/139 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE+LI+ LV+ +A+ YR G+P DL+Q GN+G++ ER+D GY+FSTY +W
Sbjct: 94 AREKLIRHNLRLVVSIAKKYRASGLPLIDLIQEGNIGLMTAVERYDPELGYRFSTYATFW 153
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I + VA +R I++P ++ ISK+++ L HG+ D E+A+ L + I
Sbjct: 154 IRQAIGRAVANLSRTIRVPVHMHDLISKVRRTEAQLEQVHGRPATDQELAQALDLDIERI 213
Query: 416 RSASECLRIVGSIDQKIGD 434
A + S+D+ IG+
Sbjct: 214 EQARSAIPRTSSLDKPIGE 232
>gi|239616750|ref|YP_002940072.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
gi|239505581|gb|ACR79068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
Length = 405
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 8/157 (5%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
REELI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +GYKFSTY +W
Sbjct: 160 AREELITANLRLVVSIAKRYIGRGLSFLDLIQEGNIGLIKAVEKFDWKKGYKFSTYATWW 219
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS---L 412
IR++I++ +A AR I++P + I+K+ K + HG+YP E+ K TG + +
Sbjct: 220 IRQAITRAIADQARTIRVPVHMVETINKVNKVIREHLQEHGEYPTVEELGKLTGKTPEKI 279
Query: 413 AEIRSASECL-----RIVGSIDQKIGDCLNAKYLNIP 444
EI +AS+ I G + +GD ++ + + P
Sbjct: 280 EEILAASKETVSLESPISGDEESTMGDFVHDESIEKP 316
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGW 294
L A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
WIR++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|378823725|ref|ZP_09846324.1| putative RNA polymerase sigma factor RpoD [Sutterella parvirubra
YIT 11816]
gi|378597464|gb|EHY30753.1| putative RNA polymerase sigma factor RpoD [Sutterella parvirubra
YIT 11816]
Length = 643
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 96/159 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R +K A + ++I++ LV+ +A+ Y G+ +DL+Q GN+G+++ ++F++
Sbjct: 394 RAMKLAQANLMQAKAKMIEANLRLVISIAKGYVNRGLAMTDLIQEGNLGLMKAVDKFEYR 453
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RGYKFSTY +W+R+S+++ VA I+IP + +K+++ ++ +G+ P + E
Sbjct: 454 RGYKFSTYATWWVRQSVTRAVADFGNTIRIPVHMTESYNKLRRQKQKFLQQNGRQPTEQE 513
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLN 442
+A GL LA++ ++ +R V SID IGD +A L+
Sbjct: 514 LADLAGLPLAKVVLLTQAMRGVESIDAPIGDEEDATKLD 552
>gi|443289602|ref|ZP_21028696.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
gi|385887217|emb|CCH16770.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
Length = 534
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
GW R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 287 LGWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 346
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 347 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 406
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ ++ + R S+DQ IGD
Sbjct: 407 KEMDITPEKVLEIQQYAREPISLDQTIGD 435
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 102/168 (60%), Gaps = 1/168 (0%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ G+S R L+ L G +E++I++ LV+ +++ Y+G G+ F DL+ GN+G++
Sbjct: 58 WAKEIGISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLI 117
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+F++ +GYKFSTY +WIR+++ + + R I++P +N EISK++K + +
Sbjct: 118 RAVEKFEYDKGYKFSTYAYHWIRQALVRAICDKGRTIRVPVHINEEISKLKKVQLEIRQK 177
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKI-GDCLNAKYL 441
+G+ E+++ +S +IR + S+DQK+ GD N+ L
Sbjct: 178 YGRSATVRELSERLEISPEKIRVLRSVNNPMLSLDQKVLGDEENSTLL 225
>gi|441518658|ref|ZP_21000373.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 322
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 82 GEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++KI + R+ L G+ D E+A TG+
Sbjct: 142 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKISRIRRELHQQLGREATDEELASETGIPA 201
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
A+I + R S+D +G+
Sbjct: 202 AKIADLMDHSRDTVSLDMPVGN 223
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 93/148 (62%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 174 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 233
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA
Sbjct: 234 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 293
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 294 TRMEMTIEKLRFIAKSAQLPISLETPIG 321
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 93/148 (62%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 170 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 229
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA
Sbjct: 230 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 289
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 290 TRMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 121/202 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ +L E G+ AS A ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 204
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +++ ++R +
Sbjct: 205 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLSRNPSEAEMAEALEITVQQLRQLQQL 264
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 265 RRQALSLNHRVGKEEDTELMDL 286
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 16/225 (7%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWA-------QAAG 280
L GR + R+E +++ VQ L ++ L+KE G+ +L WA + A
Sbjct: 50 LQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWAN 109
Query: 281 VSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
++ L+Q G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+F
Sbjct: 110 LTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKF 169
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D +GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ L+ G+ P
Sbjct: 170 DPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPT 229
Query: 401 DIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLN 437
+IA +++ ++ RS S ++ D ++GD L
Sbjct: 230 IEDIASELEMTVPQVRELLVRVPRSVSLETKVGKDKDTELGDLLE 274
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 117/211 (55%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ + L K+ G + WA+ +S L+ L
Sbjct: 21 RVPLLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTP 200
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+IR E R+ S+D ++GD + + +++
Sbjct: 201 KQIREYLEKSRLPLSLDLRVGDNQDTELVDL 231
>gi|357399796|ref|YP_004911721.1| RNA polymerase principal sigma factor hrdD [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|386355832|ref|YP_006054078.1| RNA polymerase principal sigma factor [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|337766205|emb|CCB74916.1| RNA polymerase principal sigma factor hrdD [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365806340|gb|AEW94556.1| RNA polymerase principal sigma factor [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 326
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%)
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
L+ A G +E L+ + G ++ I+S LV+ +AR Y G+P DL+Q GN
Sbjct: 65 LDEGKSAEGATEEELRALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNA 124
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+FD+T+G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++
Sbjct: 125 GLVRAVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREF 184
Query: 392 TNSHGKYPEDIEIAKYTGLS 411
HG+ PE EIA G S
Sbjct: 185 NREHGRDPEPAEIAAELGAS 204
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 100/165 (60%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V++ A+ E + L ++ G + A+A + + L + L G + +I
Sbjct: 84 EVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKELDRKLYQGRVAKRRMI 143
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 144 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAIT 203
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
+ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 204 RTIANDARTIRLPIHIVEKLNKLKKAQRDLKQELQRNPTEAELAQ 248
>gi|300784507|ref|YP_003764798.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|384147774|ref|YP_005530590.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|399536392|ref|YP_006549054.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|299794021|gb|ADJ44396.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|340525928|gb|AEK41133.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|398317162|gb|AFO76109.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
Length = 467
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 218 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 277
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 278 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 337
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 338 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 368
>gi|291298947|ref|YP_003510225.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290568167|gb|ADD41132.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 330
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 93/158 (58%)
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
Q GV+E L + + G +E+ IK+ LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 61 QPEGVTEAELGRLVLDGQKAKEQFIKANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRA 120
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
E+FD+ RG+KFSTY +WIR++IS+ +A+ R +++P L ++++++ + LT G
Sbjct: 121 VEKFDYQRGFKFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNTARQLTRELG 180
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
PE +IA G+++ + + S+D IGD
Sbjct: 181 ADPEPEQIANALGVTVERVNELIRWSQDTVSLDTPIGD 218
>gi|374340623|ref|YP_005097359.1| sigma-70 family RNA polymerase sigma factor [Marinitoga piezophila
KA3]
gi|372102157|gb|AEX86061.1| RNA polymerase sigma factor, sigma-70 family [Marinitoga piezophila
KA3]
Length = 419
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ELIK+ LV+ +A+ Y G G+ F DL+Q GN+G+++ +FD+ +G+KFSTY +W
Sbjct: 174 ARDELIKANLRLVISIAKKYIGRGLSFLDLIQEGNIGLIKAVNKFDYKKGFKFSTYATWW 233
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG------ 409
IR++I++ +A AR I+IP + I+K K + HG+YP ++A+ TG
Sbjct: 234 IRQAITRAIADQARTIRIPVHMVETINKFNKIIREYLQEHGEYPSPEKLAELTGKPVEKV 293
Query: 410 ----LSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIP 444
L+ E SA L D IGD + L+ P
Sbjct: 294 NEILLTARETISADSPLGASDEDDSTIGDFIADDTLDKP 332
>gi|408678775|ref|YP_006878602.1| RNA polymerase principal sigma factor HrdD [Streptomyces venezuelae
ATCC 10712]
gi|328883104|emb|CCA56343.1| RNA polymerase principal sigma factor HrdD [Streptomyces venezuelae
ATCC 10712]
Length = 333
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 82/130 (63%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
++AAG S L+ A G ++ IKS LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 SEAAGASREELEALYAAGERAKDLFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
E+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ H
Sbjct: 137 AVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREH 196
Query: 396 GKYPEDIEIA 405
G+ PE EIA
Sbjct: 197 GREPEPAEIA 206
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 93/148 (62%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 170 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 229
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA
Sbjct: 230 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIA 289
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIG 433
+++ ++R ++ ++ S++ IG
Sbjct: 290 TRMEMTIEKLRFIAKSAQLPISLETPIG 317
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 110/193 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E K VQ + L+ I+ L ++ + + W+ AA +SE L++ L G + +++
Sbjct: 29 EVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEAAKRKMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 89 EANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 148
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A R I++P + +++KI+K ++ L+ G+ E+A L+ ++R E
Sbjct: 149 RAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATSLDLTTKQVREYLER 208
Query: 422 LRIVGSIDQKIGD 434
R S+D ++GD
Sbjct: 209 ARQPLSLDVRVGD 221
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 114/201 (56%), Gaps = 2/201 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + + K L ++ + + WA + E +L Q L+
Sbjct: 34 RIPLLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDMLLQQLSQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ I F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 94 GQIAKQKMIQANLRLVVSIAKKYQKRNIEFLDLIQEGALGLERGVEKFDPTLGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A+ +R I++P + +++KI++ ++ L+ G + EIA+ L
Sbjct: 154 YWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKRVQRELSQKLGHTADVTEIAQALNLEP 213
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+IR + R S+D IG
Sbjct: 214 RQIRECLQFARQPVSLDMGIG 234
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E ++ VQ + LE + LE + G+ ++ WA+A G+S + L+ + G CRE
Sbjct: 265 AKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCRE 324
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y+G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 325 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 384
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
+I K + +H+R I++P + + K+ KAR G+ P + +A+ G+++ ++
Sbjct: 385 AIKKSIFKHSRLIRLPESVYALLKKVGKARLECI-LEGEQPTNENVARRAGITIEKL 440
>gi|149916650|ref|ZP_01905152.1| RNA polymerase sigma factor rpoD [Plesiocystis pacifica SIR-1]
gi|149822367|gb|EDM81756.1| RNA polymerase sigma factor rpoD [Plesiocystis pacifica SIR-1]
Length = 398
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
+R H A W + E +++ LV+ +AR Y +P SDL+Q GN+G+++ +RFD
Sbjct: 148 QRARSAHQALCW-AKNEFVQANLRLVVTIARRYDQRLMPLSDLIQEGNIGLMKAVDRFDG 206
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
RGY+FSTY +WIR SI++ +A R +++P ++ +I +IQ+A + L G+ P
Sbjct: 207 KRGYRFSTYATWWIRHSINRALANKGRTVRLPAHVSADIQRIQRATRELETRTGESPSVD 266
Query: 403 EIAKYTGLSLAEIRSASE 420
E+AK TGLS +R S+
Sbjct: 267 ELAKETGLSKTRVRKLSK 284
>gi|383761703|ref|YP_005440685.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381381971|dbj|BAL98787.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 433
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 80/124 (64%), Gaps = 6/124 (4%)
Query: 294 WYCR------EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
WY R E LIK+ LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD++RGYK
Sbjct: 189 WYVRDGQAAQEHLIKANSRLVVSVAKKYVGRGVPFLDLIQEGNIGLIRAVKKFDYSRGYK 248
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+++++ +A R I++P + +I+++ + + L G+ P EIA+
Sbjct: 249 FSTYATWWIRQAVTRAIADQGRTIRVPVHMYEQINRLTRTSRQLVQELGRDPTTEEIAEE 308
Query: 408 TGLS 411
G+S
Sbjct: 309 LGVS 312
>gi|406835430|ref|ZP_11095024.1| sigma-70 family RNA polymerase sigma factor [Schlesneria paludicola
DSM 18645]
Length = 565
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 114/212 (53%), Gaps = 25/212 (11%)
Query: 234 RRLTIARNEAEMSKG-----VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
RR A NEAE+S+ V++V LE +++ A + W +A KQ
Sbjct: 252 RRTAAAVNEAEVSRRELNDLVELV--LETPADFVDRVRRIMAKFDAWTRA--------KQ 301
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
HL+ G LV+ +A+ YR G+ F DL+Q GN G+++G E++++ RGYKF
Sbjct: 302 HLSGG----------NLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKF 351
Query: 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408
STY +WIR++I++ VA HAR I+IP + + IS+++ + + G+ P E+A+
Sbjct: 352 STYATWWIRQAITRAVADHARTIRIPVHMFQCISQLKAKSEQIRQETGRDPSMEELAESV 411
Query: 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
G+S+ E + + S+D +G+ + +
Sbjct: 412 GMSIEETERIMKTWKHPVSLDTPVGESEDGSF 443
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 117/211 (55%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ + L K+ G + WA+ +S L+ L
Sbjct: 33 RVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQ 92
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 93 GQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 152
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 153 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTP 212
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+IR E R+ S+D ++GD + + +++
Sbjct: 213 KQIREYLEKSRLPLSLDLRVGDNQDTELVDL 243
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 117/211 (55%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ + L K+ G + WA+ +S L+ L
Sbjct: 33 RVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQ 92
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 93 GQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 152
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 153 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTP 212
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+IR E R+ S+D ++GD + + +++
Sbjct: 213 KQIREYLEKSRLPLSLDLRVGDNQDTELVDL 243
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 201 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAQ 249
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 190 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 249
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 250 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 309
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 310 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 340
>gi|227542254|ref|ZP_03972303.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227182083|gb|EEI63055.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 603
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 363 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 422
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 423 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 482
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 483 EKVLEIQQYAREPISLDQTIGD 504
>gi|255325126|ref|ZP_05366232.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311739588|ref|ZP_07713423.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255297691|gb|EET77002.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311305404|gb|EFQ81472.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 490
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 228 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 281
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+
Sbjct: 282 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 341
Query: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ L G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 342 GRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIGD 391
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 99/171 (57%), Gaps = 2/171 (1%)
Query: 272 LNCW--AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
L W A G + + L++ L ++E++++ LV+ +A+ Y G+ F DL+Q G
Sbjct: 421 LRMWMTADEMGDAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEG 480
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
N+G+++ E+F++ RGYKFSTY +WIR++I++ +A AR I+IP + I+K+ + +K
Sbjct: 481 NMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQK 540
Query: 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
L +G+ P EIA+ L + +RS + + S+ +GD + +
Sbjct: 541 QLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSF 591
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 33/222 (14%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERV---- 285
AR +AE++ A+ + ++ L K+ GK A LN + AG+ +ER+
Sbjct: 153 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFSTERMRRIM 205
Query: 286 -------LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+ Q W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 206 ESGEKLTVAQRRDLSWIARDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 265
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 266 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 325
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 326 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 367
>gi|407647061|ref|YP_006810820.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
gi|407309945|gb|AFU03846.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
Length = 457
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 210 YNWIVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 269
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 270 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 329
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ ++ + R S+DQ IGD
Sbjct: 330 KEMDITPEKVLEIQQYAREPISLDQTIGD 358
>gi|334564689|ref|ZP_08517680.1| RNA polymerase sigma factor [Corynebacterium bovis DSM 20582]
Length = 577
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 89/142 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 337 GRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 396
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ +S+
Sbjct: 397 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPAPEELAREMDISV 456
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 457 DKVLEIQQYAREPISLDQTIGD 478
>gi|227488750|ref|ZP_03919066.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091172|gb|EEI26484.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 599
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 359 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 418
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 419 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 478
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 479 EKVLEIQQYAREPISLDQTIGD 500
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 201 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGW 294
L A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
WIR++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 201 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGW 294
L A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
WIR++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 201 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 110/193 (56%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E K VQ + L+ I+ L ++ + + W+ AA +SE L++ L G + +++
Sbjct: 29 EVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQLSEAELQKALHEGEAAKRKMV 88
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I+
Sbjct: 89 EANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAIT 148
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A R I++P + +++KI+K ++ L+ G+ E+A L+ ++R E
Sbjct: 149 RAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATALDLTTKQVREYLER 208
Query: 422 LRIVGSIDQKIGD 434
R S+D ++GD
Sbjct: 209 ARQPLSLDVRVGD 221
>gi|296117756|ref|ZP_06836340.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
gi|295969487|gb|EFG82728.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
Length = 471
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 231 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 290
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 291 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 350
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 351 EKVLEIQQYAREPISLDQTIGD 372
>gi|409358547|ref|ZP_11236910.1| RNA polymerase sigma factor [Dietzia alimentaria 72]
Length = 462
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 35/223 (15%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-----------------WAQAAGV 281
AR +AE++ A+ + ++ L K+ GK A LN W A V
Sbjct: 149 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYSTW-HMAQV 200
Query: 282 SERVLK----QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
ER K Q F W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+
Sbjct: 201 VERGDKLTTAQRRDFRWIERDGVRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNL 260
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 261 GLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQREL 320
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 321 LQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 363
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 100/164 (60%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ +A++E + L ESG + + A +S + L++ L G + ++I
Sbjct: 84 EIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRLAKRQMI 143
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 144 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAIT 203
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+ +A AR I++P + +++K++K ++ L + P + E+A
Sbjct: 204 RTIANDARTIRLPIHIVEKLNKLKKVQRDLKQELQRNPTEEELA 247
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 118/207 (57%), Gaps = 6/207 (2%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L + E ++K VQ +L +K L ++ + +L W+ A +++ L + + G
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++I + LV+ +A+ Y+ + F DL+Q G +G+ + ++F + GYKFSTY +W
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQEGTLGLERAVDKFKPSLGYKFSTYAYWW 154
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +++ +R I++P + +++KI++ ++ L+ G+ P EIA+ G ++I
Sbjct: 155 IRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPTVTEIAEALGFKPSQI 214
Query: 416 RSASECLRIV---GSIDQKIGDCLNAK 439
R ECLR+ S+D K+G N +
Sbjct: 215 R---ECLRLARKPMSLDVKVGTEQNTQ 238
>gi|54025729|ref|YP_119971.1| RNA polymerase sigma factor [Nocardia farcinica IFM 10152]
gi|54017237|dbj|BAD58607.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 454
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 207 YNWIVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 266
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A
Sbjct: 267 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 326
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K ++ ++ + R S+DQ IGD
Sbjct: 327 KEMDITPEKVLEIQQYAREPISLDQTIGD 355
>gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length = 467
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 227 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 286
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 287 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 346
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 347 EKVLEIQQYAREPISLDQTIGD 368
>gi|108805110|ref|YP_645047.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108766353|gb|ABG05235.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 366
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 91/139 (65%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L+++ LV+ +A+ YR G+ F DL+Q GN+G+++ AE+FD+ +G+KFSTY +W
Sbjct: 129 SKDKLVEANLRLVVSIAKKYRNRGVSFLDLIQEGNIGLIRAAEKFDYRKGFKFSTYATWW 188
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A R I+IP + +++K + ++ +T + G+ P D E+A+ G+ + E+
Sbjct: 189 IRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALGREPTDEEVAEELGVPVEEV 248
Query: 416 RSASECLRIVGSIDQKIGD 434
E + S++ +GD
Sbjct: 249 LRLQEISQRSISLETPVGD 267
>gi|375291076|ref|YP_005125616.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 241]
gi|375293282|ref|YP_005127821.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae INCA
402]
gi|376243011|ref|YP_005133863.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae CDCE
8392]
gi|376245908|ref|YP_005136147.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC01]
gi|376284915|ref|YP_005158125.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 31A]
gi|376290613|ref|YP_005162860.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae C7
(beta)]
gi|376293415|ref|YP_005165089.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC02]
gi|419860975|ref|ZP_14383615.1| RNA polymerase sigma factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|371578430|gb|AEX42098.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 31A]
gi|371580747|gb|AEX44414.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 241]
gi|371582953|gb|AEX46619.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae INCA
402]
gi|372104009|gb|AEX67606.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae C7
(beta)]
gi|372106253|gb|AEX72315.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae CDCE
8392]
gi|372108538|gb|AEX74599.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC01]
gi|372110738|gb|AEX76798.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC02]
gi|387982659|gb|EIK56160.1| RNA polymerase sigma factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 526
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 286 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 345
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 346 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 405
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 406 EKVLEIQQYAREPISLDQTIGD 427
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 207 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 266
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK +S
Sbjct: 267 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISP 326
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 327 EKVLEIQQYAREPISLDQTIGD 348
>gi|376254497|ref|YP_005142956.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae PW8]
gi|372117581|gb|AEX70051.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae PW8]
Length = 517
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 396
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 397 EKVLEIQQYAREPISLDQTIGD 418
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 116/211 (54%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ +ER + + + +G S++ + +S V+K+ L
Sbjct: 46 RVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLSTSVIKKRLRA 105
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 106 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+AKY L
Sbjct: 166 YWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPE 225
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ S++ K+GD + L++
Sbjct: 226 DDVKDLMCKAGQPVSLETKVGDGEDTVLLDL 256
>gi|38233991|ref|NP_939758.1| RNA polymerase sigma factor [Corynebacterium diphtheriae NCTC
13129]
gi|38200253|emb|CAE49937.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
Length = 502
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 262 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 321
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 322 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 381
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 382 EKVLEIQQYAREPISLDQTIGD 403
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 201 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|358445404|ref|ZP_09156014.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608850|emb|CCE54263.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 472
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 232 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 291
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 292 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 351
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 352 EKVLEIQQYAREPISLDQTIGD 373
>gi|319941926|ref|ZP_08016247.1| hypothetical protein HMPREF9464_01466 [Sutterella wadsworthensis
3_1_45B]
gi|319804579|gb|EFW01449.1| hypothetical protein HMPREF9464_01466 [Sutterella wadsworthensis
3_1_45B]
Length = 779
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 91/147 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I++ LV+ +A+ Y G+ +DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 541 AKAKMIEANLRLVISIAKGYVNRGLAMTDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWW 600
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
+R+S+++ VA I+IP + +K+++ ++ HG+ P + E+A+ L L ++
Sbjct: 601 VRQSVTRAVADFGNTIRIPVHMTESYNKLRRQKQKFLQQHGRQPTEQELAELADLPLQKV 660
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLN 442
++ +R V SID IGD +A L+
Sbjct: 661 NLLTQAMRGVESIDAPIGDEEDATKLD 687
>gi|315651467|ref|ZP_07904490.1| DNA-directed RNA polymerase sigma subunit RpoD [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486287|gb|EFU76646.1| DNA-directed RNA polymerase sigma subunit RpoD [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 389
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 9/192 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK L+ + +++++ A R+++ +S LV+ +A+ Y G G+ F
Sbjct: 121 KEIGKIPLLSV-DEEMNLAKKICDPDEAVRKEARKQMAESNLRLVVSIAKRYMGRGMQFL 179
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+L+ E+FD+ +G+KFSTY +WIR++I++ +A AR I+IP + I++
Sbjct: 180 DLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINR 239
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----ASECLRIVGSI----DQKIGDC 435
+ K ++ L G+ P E+AK G+ ++++R A E + + I D +GD
Sbjct: 240 LIKIQRKLVQEFGREPRPDEVAKVMGIPVSKVREIMSFALEPVSMETPIGDEDDSHLGDF 299
Query: 436 LNAKYLNIPPFF 447
L IP F
Sbjct: 300 LQDSNAKIPVNF 311
>gi|13195265|gb|AAK15630.1|AF326348_2 RNA polymerase major sigma subunit [Corynebacterium ammoniagenes]
Length = 467
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 35/221 (15%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV----LKQH--------LAFG- 293
K Q+ A+ + ++ L K+ GK A LN Q ++ER+ QH +A G
Sbjct: 150 KDAQLTASADSVRAYL-KQIGKVALLNA-EQEVSLAERIEAGLYAQHRLDEMERLIAEGD 207
Query: 294 --------------WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+
Sbjct: 208 AAAKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGL 267
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 268 IRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ 327
Query: 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 328 DLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIGD 368
>gi|376287924|ref|YP_005160490.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
gi|371585258|gb|AEX48923.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
Length = 526
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 286 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 345
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 346 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 405
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 406 EKVLGIQQYAREPISLDQTIGD 427
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 91/141 (64%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L + G+ P D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQTLGREPTDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I + R S+D +G
Sbjct: 199 EKIADLLDHSRDPVSLDMPVG 219
>gi|337290926|ref|YP_004629947.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|397654185|ref|YP_006494868.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334699232|gb|AEG84028.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|393403141|dbj|BAM27633.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 533
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 293 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 352
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 353 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 412
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 413 EKVLEIQQYAREPISLDQTIGD 434
>gi|376251494|ref|YP_005138375.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC03]
gi|372112998|gb|AEX79057.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC03]
Length = 530
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 290 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 349
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 350 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 409
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 410 EKVLEIQQYAREPISLDQTIGD 431
>gi|376248695|ref|YP_005140639.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC04]
gi|376257308|ref|YP_005145199.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae VA01]
gi|372115263|gb|AEX81321.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC04]
gi|372119825|gb|AEX83559.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae VA01]
Length = 506
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 266 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 325
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 326 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 385
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 386 EKVLEIQQYAREPISLDQTIGD 407
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 112/207 (54%), Gaps = 3/207 (1%)
Query: 229 LNSRGR--RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVL 286
LN GR R+T E +++ +Q ++ + L G+ + A G + L
Sbjct: 38 LNEIGRIPRVT-PEEEIHLARRIQAKLAIDGAREELAMRLGRPSPEEDVAAFMGRDPKAL 96
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
+ G + + +LI + LV+ +A+ Y G +PF DL+Q GN+G+++ E+FD +GY
Sbjct: 97 IEATRQGLWAQRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGNIGLMRATEKFDPEKGY 156
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
+FSTY +WIR+SI++ +A AR I++P + ++ K+++ + T G+ P + E+A
Sbjct: 157 RFSTYATWWIRQSITRAIANQARTIRLPIHMVEKVRKVRREMRMATLELGRRPSEDELAS 216
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIG 433
+ + ++R+ E R S+D +G
Sbjct: 217 RLAIKVKKLRTIQEVSRQPVSLDMPVG 243
>gi|315924365|ref|ZP_07920587.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622244|gb|EFV02203.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 396
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + L + A + K+ A ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 132 KEIGRVSLLTADEEMA-----IAKRMAAGDEDAKKELAEANLRLVVSIAKRYVGRGMSFL 186
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 187 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 246
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + + L +G+ P EI K G S ++R + + S++ IG+
Sbjct: 247 LIRVSRQLLQEYGREPTPAEIGKEMGFSEDKVREIQKIAQDPVSLETPIGE 297
>gi|386852049|ref|YP_006270062.1| RNA polymerase sigma factor rpoD [Actinoplanes sp. SE50/110]
gi|359839553|gb|AEV87994.1| RNA polymerase sigma factor rpoD [Actinoplanes sp. SE50/110]
Length = 528
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
ER LK G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 278 ERDLKWINRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 337
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 338 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 397
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 398 ELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 101/170 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + +E + L+K+ + + G+S++ L+ L G
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 221
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
IR++I++ +A AR I++P + +++K++K ++ L + P +IE+A
Sbjct: 222 IRQAITRAIANDARTIRLPIHIVEKLNKLKKYQRELKQKLQRNPSEIELA 271
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 118/215 (54%), Gaps = 29/215 (13%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERVLKQHLAFG---- 293
K ++ A+ + ++ L K+ GK A LN + AG+ +ER L++ +A G
Sbjct: 164 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFATER-LRRMMASGEKIS 221
Query: 294 --------WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 222 TAQKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 281
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 282 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREP 341
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 342 TPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 376
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 225 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 284
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 285 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 344
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 345 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 375
>gi|384515838|ref|YP_005710930.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
gi|334697039|gb|AEG81836.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
Length = 533
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 293 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 352
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 353 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 412
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 413 EKVLEIQQYAREPISLDQTIGD 434
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 244 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 303
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 304 KMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 363
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS---LAEI 415
SI K + +++R I++P + + K+ KAR G+ P + +A+ G++ LA++
Sbjct: 364 SIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMD-GEQPTNEVVARRAGITIEKLAKL 422
Query: 416 RSASECLR 423
R+ + +R
Sbjct: 423 RAKTRKVR 430
>gi|313892356|ref|ZP_07825948.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
gi|313119215|gb|EFR42415.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
Length = 393
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+ +GYKFSTY +W
Sbjct: 160 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYKKGYKFSTYATWW 219
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + G+ + E+AK G+S+ +I
Sbjct: 220 IRQAITRSIADQARTIRVPVHMVETINKMNRIGRKFLQEFGREASNEELAKEMGISVEKI 279
Query: 416 RSASECLRIVGSIDQKIGD 434
R A + + S++ IG+
Sbjct: 280 REAKKAAQDPISLETPIGE 298
>gi|403730493|ref|ZP_10949025.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
gi|403202474|dbj|GAB93356.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
Length = 442
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 240 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 299
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 300 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 359
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 360 EKVLEIQQYAREPISLDQTIGD 381
>gi|359771702|ref|ZP_09275148.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
gi|359311138|dbj|GAB17926.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
Length = 476
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 236 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 295
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 296 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 355
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 356 EKVLEIQQYAREPISLDQTIGD 377
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E+++ VQ + +E K L++E + S A+A G + + + L G +
Sbjct: 78 AEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGRIAK 137
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 138 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 197
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
++I++ +A AR I++P + +++K++KA++ L + P + E+A
Sbjct: 198 QAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELA 245
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 230 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 289
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 290 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 349
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 350 EKVLEIQQYAREPISLDQTIGD 371
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 221 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 280
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 281 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 340
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 341 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 371
>gi|359767847|ref|ZP_09271629.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|378717657|ref|YP_005282546.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
gi|359314763|dbj|GAB24462.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|375752360|gb|AFA73180.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
Length = 483
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 243 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 302
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 303 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 362
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 363 EKVLEIQQYAREPISLDQTIGD 384
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 114/205 (55%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ ++ + + ++ L E G+ + A A G+SE L G ++
Sbjct: 36 ANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGIIAKQ 95
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+
Sbjct: 96 KMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQ 155
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
I++ +A R +++P + +++K+Q + L S + P + E+A+ +S ++R
Sbjct: 156 GITRTIANQGRTVRLPVHVVEQLNKLQGIHQDLRRSLRRKPTEDELAEALSISPQQLRLL 215
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
+ R S++ ++G N++ +++
Sbjct: 216 EQVRRKSLSLNHRVGSEENSELMDL 240
>gi|384566576|ref|ZP_10013680.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522430|gb|EIE99625.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 439
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 190 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 249
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 250 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 309
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 310 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 340
>gi|300858628|ref|YP_003783611.1| RNA polymerase sigma factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|375288806|ref|YP_005123347.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314390|ref|YP_005375245.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis P54B96]
gi|384504811|ref|YP_005681481.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1002]
gi|384506905|ref|YP_005683574.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis C231]
gi|384508992|ref|YP_005685660.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis I19]
gi|384511084|ref|YP_005690662.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis PAT10]
gi|385807690|ref|YP_005844087.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 267]
gi|387136734|ref|YP_005692714.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300686082|gb|ADK29004.1| RNA polymerase sigma factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|302206337|gb|ADL10679.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis C231]
gi|302330894|gb|ADL21088.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1002]
gi|308276579|gb|ADO26478.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis I19]
gi|341825023|gb|AEK92544.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis PAT10]
gi|348607179|gb|AEP70452.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371576095|gb|AEX39698.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380869891|gb|AFF22365.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis P54B96]
gi|383805083|gb|AFH52162.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 267]
Length = 517
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 396
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 397 EKVLEIQQYAREPISLDQTIGD 418
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 219 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 278
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 279 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 338
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 339 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 369
>gi|224532358|ref|ZP_03672988.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi WI91-23]
gi|224512665|gb|EEF83036.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi WI91-23]
Length = 631
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 245 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 304
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 305 KMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 364
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS---LAEI 415
SI K + +++R I++P + + K+ KAR G+ P + +A+ G++ LA++
Sbjct: 365 SIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMD-GEQPTNEVVARRAGITIEKLAKL 423
Query: 416 RSASECLR 423
R+ + +R
Sbjct: 424 RAKTRKVR 431
>gi|392400741|ref|YP_006437341.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis Cp162]
gi|390531819|gb|AFM07548.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis Cp162]
Length = 521
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 281 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 340
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 341 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 400
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 401 EKVLEIQQYAREPISLDQTIGD 422
>gi|320161271|ref|YP_004174495.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319995124|dbj|BAJ63895.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 409
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 80/121 (66%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + GW RE LI + LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD+ RG
Sbjct: 161 LRRLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQEGNIGLIRATKKFDYRRG 220
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+++++ +A R I++P + +I+K+ + + LT G+ P E+A
Sbjct: 221 HKFSTYATWWIRQAVTRAIADQGRTIRVPVHMGDQINKLLRVQHQLTQRLGREPSVEELA 280
Query: 406 K 406
+
Sbjct: 281 E 281
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 244 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 303
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 304 KMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 363
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS---LAEI 415
SI K + +++R I++P + + K+ KAR G+ P + +A+ G++ LA++
Sbjct: 364 SIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMD-GEQPTNEVVARRAGITIEKLAKL 422
Query: 416 RSASECLR 423
R+ + +R
Sbjct: 423 RAKTRKVR 430
>gi|389850558|ref|YP_006352793.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 258]
gi|388247864|gb|AFK16855.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 258]
Length = 521
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 281 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 340
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 341 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 400
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 401 EKVLEIQQYAREPISLDQTIGD 422
>gi|386740540|ref|YP_006213720.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 31]
gi|384477234|gb|AFH91030.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 31]
Length = 517
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 396
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 397 EKVLEIQQYAREPISLDQTIGD 418
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 280 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 339
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 340 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 399
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 400 EKVLEIQQYAREPISLDQTIGD 421
>gi|377561650|ref|ZP_09791093.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
gi|377521212|dbj|GAB36258.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
Length = 486
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 246 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 305
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 306 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 365
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 366 EKVLEIQQYAREPISLDQTIGD 387
>gi|195941530|ref|ZP_03086912.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 80a]
Length = 631
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 275 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 334
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 335 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 394
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 395 EKVLEIQQYAREPISLDQTIGD 416
>gi|387138806|ref|YP_005694785.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|349735284|gb|AEQ06762.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis CIP 52.97]
Length = 517
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 396
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 397 EKVLEIQQYAREPISLDQTIGD 418
>gi|441513656|ref|ZP_20995484.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
gi|441451602|dbj|GAC53445.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
Length = 472
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 232 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 291
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 292 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 351
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 352 EKVLEIQQYAREPISLDQTIGD 373
>gi|329121328|ref|ZP_08249954.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
gi|327469737|gb|EGF15203.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
Length = 396
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+ +GYKFSTY +W
Sbjct: 163 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYKKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + G+ + E+AK G+S+ +I
Sbjct: 223 IRQAITRSIADQARTIRVPVHMVETINKMNRIGRKFLQEFGREASNEELAKEMGISVEKI 282
Query: 416 RSASECLRIVGSIDQKIGD 434
R A + + S++ IG+
Sbjct: 283 REAKKAAQDPISLETPIGE 301
>gi|159037077|ref|YP_001536330.1| RNA polymerase sigma factor [Salinispora arenicola CNS-205]
gi|157915912|gb|ABV97339.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 532
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 292 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 351
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 352 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 411
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 412 EKVLEIQQYAREPISLDQTIGD 433
>gi|407983277|ref|ZP_11163934.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
gi|407375170|gb|EKF24129.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
Length = 527
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 287 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 346
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 347 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 406
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 407 EKVLEIQQYAREPISLDQTIGD 428
>gi|108803849|ref|YP_643786.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108765092|gb|ABG03974.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 289
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 83/137 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++LI+ LV+ +A+ YRG G+PF DL+Q GN+G+++ E+FD RG++FSTY +W
Sbjct: 51 ARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKFDPERGFRFSTYATWW 110
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++ + VA R I++P + +I K+ + L+ + P D E+A+ G + E+
Sbjct: 111 IRQAVQRAVADKGRTIRVPVHMTEKIRKMARTYNELSAQLEREPTDEEVAEALGWTPEEV 170
Query: 416 RSASECLRIVGSIDQKI 432
R + S++Q +
Sbjct: 171 REVKGAMPDATSLNQPL 187
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 108/199 (54%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L E V+ + +E IK L G +L W++AA ++ LK + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD ++GY+FSTY +W
Sbjct: 83 AKRQMVEANLRLVVSVAKKYLKRNVEILDLIQEGTIGLQRGVEKFDPSKGYRFSTYAYWW 142
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ +A +R +++P ++ +I+KI+K ++ L G+ EIA L L ++
Sbjct: 143 IRQAMTRAIAEKSRTMRLPIHIHEKINKIKKTQRQLAQQLGRSATFQEIANALDLPLEKV 202
Query: 416 RSASECLRIVGSIDQKIGD 434
R R S+D ++GD
Sbjct: 203 RDCISYNRQPLSLDLRLGD 221
>gi|381204697|ref|ZP_09911768.1| RpoD subfamily RNA polymerase sigma-70 subunit [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 594
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 91/150 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ LI++ LV+ +A+ + G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 356 AKSNLIEANLRLVISIAKKHTNRGLQFLDLIQEGNLGLIRAVDKFEYRRGYKFSTYATWW 415
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+SI++ + A+ I+IP + ++K+ + K LTN G+ P E+ ++ G+ L ++
Sbjct: 416 IRQSITRAIIDQAKTIRIPVHMIETLNKLYQVSKQLTNQQGREPSIDELEEHLGMPLDKV 475
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
R A R S+D IGD +++ + P
Sbjct: 476 RDAIRISRDPVSLDSPIGDDEDSQLKDFIP 505
>gi|315502644|ref|YP_004081531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Micromonospora sp.
L5]
gi|315409263|gb|ADU07380.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Micromonospora
sp. L5]
Length = 551
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 311 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 370
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 371 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 430
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 431 EKVLEIQQYAREPISLDQTIGD 452
>gi|418053337|ref|ZP_12691407.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353178512|gb|EHB44091.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 319
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 90/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + S G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQSLGREATDDELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 EKINDLLEHSRDPVSLDMPVG 219
>gi|379715508|ref|YP_005303845.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
gi|377654214|gb|AFB72563.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
Length = 521
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 281 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 340
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 341 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 400
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 401 EKVLEIQQYAREPISLDQTIGD 422
>gi|387140798|ref|YP_005696776.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355392589|gb|AER69254.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
Length = 517
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 396
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 397 EKVLEIQQYAREPISLDQTIGD 418
>gi|302866088|ref|YP_003834725.1| RNA polymerase sigma factor RpoD [Micromonospora aurantiaca ATCC
27029]
gi|302568947|gb|ADL45149.1| RNA polymerase sigma factor RpoD [Micromonospora aurantiaca ATCC
27029]
Length = 551
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 311 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 370
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 371 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 430
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 431 EKVLEIQQYAREPISLDQTIGD 452
>gi|260424772|ref|ZP_05733235.2| RNA polymerase sigma-43 factor [Dialister invisus DSM 15470]
gi|260403136|gb|EEW96683.1| RNA polymerase sigma-43 factor [Dialister invisus DSM 15470]
Length = 394
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+T+GYKFSTY +W
Sbjct: 161 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYATWW 220
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + HG+ + E+AK S+ +I
Sbjct: 221 IRQAITRSIADQARTIRVPVHMVETINKMNRVGRHFLQEHGREATNEELAKEMETSVEKI 280
Query: 416 RSASECLRIVGSIDQKIGD 434
R A + + S++ IG+
Sbjct: 281 REAKKAAQDPISLETPIGE 299
>gi|343128010|ref|YP_004777941.1| RNA polymerase sigma factor RpoD [Borrelia bissettii DN127]
gi|342222698|gb|AEL18876.1| RNA polymerase sigma factor RpoD [Borrelia bissettii DN127]
Length = 613
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 299 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 358
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 359 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 408
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 409 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 468
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 469 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 511
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 14/211 (6%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE------RVLKQHLAFGWYCREELIK 302
V ++ E + ++ E+G AAS G+ E R L + + G +++LI
Sbjct: 164 VDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRAEQRRLMRIESVGLDAKQQLIS 223
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 224 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 283
Query: 363 MVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----A 418
+A AR I+IP + I+K+ + ++ L G+ P EI G+S +R +
Sbjct: 284 AIADQARTIRIPVHMVETINKLIRVQRQLLQDFGRDPTPEEIGSEMGMSPDRVREIQKIS 343
Query: 419 SECLRIVGSI----DQKIGDCLNAKYLNIPP 445
E + + I D ++GD + PP
Sbjct: 344 QEPVSLETPIGEEEDSQLGDFIEDSTAVAPP 374
>gi|218249968|ref|YP_002375211.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
ZS7]
gi|218165156|gb|ACK75217.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
ZS7]
Length = 631
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|225551881|ref|ZP_03772824.1| RNA polymerase sigma factor RpoD [Borrelia sp. SV1]
gi|225371676|gb|EEH01103.1| RNA polymerase sigma factor RpoD [Borrelia sp. SV1]
Length = 631
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|372325327|ref|ZP_09519916.1| RpoD-like RNA polymerase sigma factor [Oenococcus kitaharae DSM
17330]
gi|366984135|gb|EHN59534.1| RpoD-like RNA polymerase sigma factor [Oenococcus kitaharae DSM
17330]
Length = 451
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K A G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 183 KEIGRVSLLNA-TQEVEIAKRIEKGG-ADGQRARQELAEANLRLVVSIAKRYVGRGMHFL 240
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 241 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 300
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P EI L+ ++R + + S++ IG+
Sbjct: 301 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGE 351
>gi|406893396|gb|EKD38473.1| hypothetical protein ACD_75C00725G0001 [uncultured bacterium]
Length = 313
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 99/165 (60%), Gaps = 7/165 (4%)
Query: 277 QAAGVSERVLKQ---HLAFGW----YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
+ +G+ +R L+Q + GW +E L+++ LV+ +++ + G+ FSDL+Q G
Sbjct: 49 EESGIDQRRLQQLLYEIDSGWDMYKQAKEGLVRANLRLVISVSKKFVNRGLQFSDLIQEG 108
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
N+G+++ E+FD+ RGYKFSTY +WIR++I++ +A R I++P + I+++ +A K
Sbjct: 109 NIGLMKAVEKFDYHRGYKFSTYATWWIRQAITRGIADQGRTIRLPVHMIETINRLLRASK 168
Query: 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ P E+AK+ G + +I+SA + + S+D +GD
Sbjct: 169 DFMLEEHREPTPEEMAKHLGTEVGKIKSALKIAKDAISLDTPVGD 213
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 243 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 302
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 303 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 362
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 363 EKVLEIQQYAREPISLDQTIGD 384
>gi|15595057|ref|NP_212846.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi B31]
gi|216264471|ref|ZP_03436463.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
156a]
gi|221217929|ref|ZP_03589396.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
72a]
gi|225548954|ref|ZP_03769931.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 94a]
gi|225549892|ref|ZP_03770853.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 118a]
gi|226320452|ref|ZP_03796018.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 29805]
gi|226321409|ref|ZP_03796936.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi Bol26]
gi|387826344|ref|YP_005805797.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
JD1]
gi|3915854|sp|P52323.2|RPOD_BORBU RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-70
gi|2688647|gb|AAC67061.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
B31]
gi|215980944|gb|EEC21751.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
156a]
gi|221192235|gb|EEE18455.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
72a]
gi|225369351|gb|EEG98803.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 118a]
gi|225370557|gb|EEG99993.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 94a]
gi|226233205|gb|EEH31957.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi Bol26]
gi|226234094|gb|EEH32809.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 29805]
gi|312148540|gb|ADQ31199.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
JD1]
Length = 631
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|453382628|dbj|GAC82923.1| RNA polymerase sigma factor SigA [Gordonia paraffinivorans NBRC
108238]
Length = 527
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 287 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 346
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 347 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 406
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 407 EKVLEIQQYAREPISLDQTIGD 428
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 239 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 298
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 299 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 358
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 359 EKVLEIQQYAREPISLDQTIGD 380
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 27/214 (12%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERV-----------L 286
K ++ A+ + ++ L K+ GK A LN + AG+ +ER+ +
Sbjct: 178 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFATERLRRVMEAGEKLSV 236
Query: 287 KQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
Q W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 237 AQRRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 296
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 297 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 356
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 357 PEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 390
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 11/197 (5%)
Query: 239 ARNEAEMSKGVQV-VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR 297
A E E++K ++ + ER++ +E SG+ S R L+ + G +
Sbjct: 176 AEEEVELAKRIEAGLYAAERLRRAIE--SGEKVSPQL--------RRDLRWIVRDGERAK 225
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR
Sbjct: 226 NHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIR 285
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417
++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++ ++
Sbjct: 286 QAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLE 345
Query: 418 ASECLRIVGSIDQKIGD 434
+ R S+DQ IGD
Sbjct: 346 IQQYAREPISLDQTIGD 362
>gi|317132028|ref|YP_004091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ethanoligenens
harbinense YUAN-3]
gi|315470007|gb|ADU26611.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ethanoligenens
harbinense YUAN-3]
Length = 372
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 89/139 (64%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +W
Sbjct: 135 ARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + + L G+ P+ EIA+ G+S+ ++
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKVVRVERQLLQELGRQPQAEEIAELMGMSVDKV 254
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ IG+
Sbjct: 255 REIMKVAQEPVSLETPIGE 273
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 265 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 324
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E
Sbjct: 325 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 384
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+AK +S ++ + R S+DQ IGD
Sbjct: 385 LAKEMDISPEKVLEIQQYAREPISLDQTIGD 415
>gi|407983270|ref|ZP_11163927.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
gi|407375163|gb|EKF24122.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
Length = 319
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 94/150 (62%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L++ + G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T
Sbjct: 70 RELEEVVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 129
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A +R I++P L +++K+ + R+ L + G+ D E
Sbjct: 130 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQTLGREATDEE 189
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+A +G+ + +I E R S+D +G
Sbjct: 190 LAAESGIPVDKINDLLEHSRDPVSLDMPVG 219
>gi|387827609|ref|YP_005806891.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
N40]
gi|312149387|gb|ADQ29458.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
N40]
Length = 631
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|223889384|ref|ZP_03623970.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
64b]
gi|223885070|gb|EEF56174.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
64b]
Length = 631
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|145594022|ref|YP_001158319.1| RNA polymerase sigma factor [Salinispora tropica CNB-440]
gi|145303359|gb|ABP53941.1| RNA polymerase sigma factor RpoD [Salinispora tropica CNB-440]
Length = 542
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 302 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 361
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 362 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 421
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 422 EKVLEIQQYAREPISLDQTIGD 443
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 102/171 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E +++ VQ + +E I+ LE + S A++ G++E+ L L
Sbjct: 75 LLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAESLGMNEKQLDHRLYQSRV 134
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+ F DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
IR++I++ +A +R I++P + +++K++KA++ L + P ++E+A+
Sbjct: 195 IRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRNLKQELHRNPTEVELAE 245
>gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
Length = 466
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 33/222 (14%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERV---- 285
AR +AE++ A+ + ++ L K+ GK A LN + AG+ +ER+
Sbjct: 153 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFATERLRRVM 205
Query: 286 -------LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+ Q W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 206 ESGEKLSVAQRRDLSWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 265
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 266 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 325
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 326 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 367
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 249 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 308
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 309 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 368
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 369 EKVLEIQQYAREPISLDQTIGD 390
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 114/201 (56%), Gaps = 22/201 (10%)
Query: 246 SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTR 305
+ G+ VV +K TL SGK WA+ A ++ L++ + G +E +IK+
Sbjct: 164 TAGISVVD----LKPTLS--SGK----RHWAELASLTVAELEEAIREGLRAKEHMIKANL 213
Query: 306 PLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVA 365
LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A
Sbjct: 214 RLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIA 273
Query: 366 RHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIV 425
+R I++P + +++KI+KA++ ++ G+ P ++A+ ++ A++R LR+
Sbjct: 274 TQSRTIRLPVHITEKLNKIKKAQRKISQDQGRTPTLDDVARELDMTAAQVREV--LLRVP 331
Query: 426 GSI----------DQKIGDCL 436
S+ D ++GD L
Sbjct: 332 RSVSLETKVGKERDTELGDLL 352
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 229 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 288
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 289 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 348
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 349 EKVLEIQQYAREPISLDQTIGD 370
>gi|258653895|ref|YP_003203051.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nakamurella
multipartita DSM 44233]
gi|258557120|gb|ACV80062.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella
multipartita DSM 44233]
Length = 448
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 208 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 267
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 268 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 327
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 328 DKVLEIQQYAREPISLDQTIGD 349
>gi|596248|gb|AAC44104.1| primary sigma factor [Borrelia burgdorferi]
Length = 543
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 229 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 288
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 289 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 338
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 339 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 398
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 399 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 441
>gi|383782026|ref|YP_005466593.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381375259|dbj|BAL92077.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 535
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
ER LK G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 285 ERDLKWINRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 344
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P
Sbjct: 345 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 404
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E+AK ++ ++ + R S+DQ IGD
Sbjct: 405 ELAKEMDITPEKVLEIQQYAREPISLDQTIGD 436
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 110/199 (55%), Gaps = 6/199 (3%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
R+ + R E E+ ++A L + + L ++ G L WA GV L+Q L G
Sbjct: 31 RVDLLRQEEEI-----LLARLVQEREELLRQRGDG-ELTAWAGRCGVPPADLRQALHRGR 84
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E ++++ LV+ +A+ Y+ G+ DL+Q G +G+ + ER+D RG++FSTY +
Sbjct: 85 RAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVERYDPRRGFRFSTYAYW 144
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+ I++ +A +R I++P + +++I+ + LT HG+ P E+A+ GL A
Sbjct: 145 WIRQGITRALASQSRTIRLPVHVTETLNRIRTCQGELTREHGRQPTLAELARAVGLDEAR 204
Query: 415 IRSASECLRIVGSIDQKIG 433
+RS + S++ ++G
Sbjct: 205 LRSTLAHIPRPVSLEGRVG 223
>gi|330466485|ref|YP_004404228.1| RNA polymerase sigma factor [Verrucosispora maris AB-18-032]
gi|328809456|gb|AEB43628.1| RNA polymerase sigma factor [Verrucosispora maris AB-18-032]
Length = 535
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 295 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 354
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 355 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 414
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 415 EKVLEIQQYAREPISLDQTIGD 436
>gi|419718662|ref|ZP_14245972.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
gi|383305179|gb|EIC96554.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
Length = 389
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 107/192 (55%), Gaps = 9/192 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK L+ + +++++ A R+++ +S LV+ +A+ Y G G+ F
Sbjct: 121 KEIGKIPLLSV-DEEMNLAKKICDPDEAVRKEARKQMAESNLRLVVSIAKRYMGRGMQFL 179
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+L+ E+FD+ +G+KFSTY +WIR++I++ +A AR I+IP + I++
Sbjct: 180 DLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINR 239
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS----ASECLRIVGSI----DQKIGDC 435
+ K ++ L G+ P E+AK G+ ++++R A E + + I D +GD
Sbjct: 240 LIKIQRKLVQEFGREPRPDEVAKVMGIPVSKVREIMSFALEPVSMETPIGDEDDSHLGDF 299
Query: 436 LNAKYLNIPPFF 447
L +P F
Sbjct: 300 LQDSNAKVPVNF 311
>gi|157737257|ref|YP_001489940.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri RM4018]
gi|384155669|ref|YP_005538484.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri ED-1]
gi|157699111|gb|ABV67271.1| RNA polymerase sigma 70 factor [Arcobacter butzleri RM4018]
gi|345469223|dbj|BAK70674.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri ED-1]
Length = 626
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 89/146 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 391 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 450
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ EIAK GL + +++
Sbjct: 451 ISRAIADQARTIRIPIHMIETINRINKIIRKGVQENGKEPDIEEIAKEVGLPVDKVKQVI 510
Query: 420 ECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ + S++ IG + K+ + P
Sbjct: 511 KITKEPVSLEAPIGSDEDGKFGDFVP 536
>gi|433603618|ref|YP_007035987.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
gi|407881471|emb|CCH29114.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
Length = 435
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 195 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 254
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 255 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 314
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 315 EKVLEIQQYAREPISLDQTIGD 336
>gi|404214757|ref|YP_006668952.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645556|gb|AFR48796.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 474
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 234 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 293
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 294 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 353
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 354 EKVLEIQQYAREPISLDQTIGD 375
>gi|315636974|ref|ZP_07892198.1| DNA-directed RNA polymerase sigma subunit RpoD [Arcobacter butzleri
JV22]
gi|315478804|gb|EFU69513.1| DNA-directed RNA polymerase sigma subunit RpoD [Arcobacter butzleri
JV22]
Length = 626
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 89/146 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 391 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 450
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ EIAK GL + +++
Sbjct: 451 ISRAIADQARTIRIPIHMIETINRINKIIRKGVQENGKEPDIEEIAKEVGLPVDKVKQVI 510
Query: 420 ECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ + S++ IG + K+ + P
Sbjct: 511 KITKEPVSLEAPIGSDEDGKFGDFVP 536
>gi|57505389|ref|ZP_00371317.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
gi|57016214|gb|EAL53000.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
Length = 619
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 88/141 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 382 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 441
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ +IAK GLS+ +++
Sbjct: 442 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKNGKEPDVNDIAKEVGLSVDKVKQVI 501
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + K+
Sbjct: 502 KITKEPISLEAPIGSEEDGKF 522
>gi|441521299|ref|ZP_21002960.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
gi|441459131|dbj|GAC60921.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
Length = 465
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 33/222 (14%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERV---- 285
AR +AE++ A+ + ++ L K+ GK A LN + AG+ +ER+
Sbjct: 152 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFATERLRRVM 204
Query: 286 -------LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+ Q W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 205 ESGEKLSVAQRRDLSWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 264
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L
Sbjct: 265 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELL 324
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 325 QDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 366
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 119/202 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +S+ ++R +
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPNEAEMAEALEISVQQLRQLQQL 276
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 277 RRQALSLNHRVGKEEDTELMDL 298
>gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococcus equi 103S]
gi|325672677|ref|ZP_08152373.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|311888773|emb|CBH48085.1| sigma-70 factor SigA [Rhodococcus equi 103S]
gi|325556554|gb|EGD26220.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 459
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 219 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 278
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 279 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 338
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 339 EKVLEIQQYAREPISLDQTIGD 360
>gi|239626154|ref|ZP_04669185.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|355682437|ref|ZP_09062447.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
gi|239520384|gb|EEQ60250.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
gi|354811017|gb|EHE95653.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
Length = 381
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 88/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 YAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ +
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 264 VMEIMQIAREPASLETPIGE 283
>gi|213964575|ref|ZP_03392775.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
gi|213952768|gb|EEB64150.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
Length = 520
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 100/170 (58%), Gaps = 5/170 (2%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E+ +A +AQ +R L++ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 257 EAKQAGERIAYAQ-----KRDLREISRDGQRAKNHLLEANLRLVVSLAKRYTGRGMAFLD 311
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKI 384
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+
Sbjct: 312 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 371
Query: 385 QKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ L G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 372 GRIQRELLQDLGREPTPEELAKEMDITEEKVLEIQQYAREPISLDQTIGD 421
>gi|377562745|ref|ZP_09792113.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
gi|377530042|dbj|GAB37278.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
Length = 483
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 243 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 302
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 303 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 362
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 363 DKVLEIQQYAREPISLDQTIGD 384
>gi|342213895|ref|ZP_08706614.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
gi|341597483|gb|EGS40042.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
Length = 410
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 95/156 (60%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 157 AGNQEGATYKEVRLGSSAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 216
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+
Sbjct: 217 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQDLGRE 276
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P EIA+ G+++ +R + + S++ IG+
Sbjct: 277 PSPEEIAEGMGITVERVREIQKISQEPVSLETPIGE 312
>gi|1553017|gb|AAC45100.1| primary sigma factor, partial [Borrelia burgdorferi 297]
Length = 450
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 153 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 207 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 266
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 267 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 326
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 327 DKVLEIQQYAREPISLDQTIGD 348
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 93/150 (62%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L+ + G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T
Sbjct: 131 RDLRAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT 190
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+G+KFSTY +WIR++I++ +A AR I++P L +++K+ + ++ + G+ P + E
Sbjct: 191 KGFKFSTYATWWIRQAITRGMADQARTIRLPVHLVEQVNKLARIKRDMHQRQGREPSEAE 250
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+A+ +G+ +I + R S+D +G
Sbjct: 251 LAQESGIPEHKISDLLDHARDPVSLDMPVG 280
>gi|441508334|ref|ZP_20990258.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
gi|441447362|dbj|GAC48219.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
Length = 485
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 245 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 304
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 305 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 364
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 365 EKVLEIQQYAREPISLDQTIGD 386
>gi|75812393|ref|YP_320012.1| sigma-70 [Anabaena variabilis ATCC 29413]
gi|75705149|gb|ABA24823.1| Sigma-70 [Anabaena variabilis ATCC 29413]
Length = 314
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 110/205 (53%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E +++ V+ + +++ K LE++ + ++ A G SE + Q L G +E++
Sbjct: 25 QEITLARQVKQMTVVQQHKQVLEEQLHQQLNIQQLAADMGKSETEVFQILRLGQKAKEKM 84
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I + LV+ +A+ YR + F DL+Q G++G+ + ERFD RGYKFST +WIR+ I
Sbjct: 85 IAANLRLVVAIAKKYRWSQLEFLDLVQEGSIGLQKAVERFDPNRGYKFSTCAYWWIRQEI 144
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
+K +A + I+ P +N + K++K ++ L G+ P EIA++ L ++R
Sbjct: 145 TKAIANKSTTIRTPSHMNDRLIKLKKVQRELVKILGREPNIAEIAEFAELEPNQVRECLI 204
Query: 421 CLRIVGSIDQKIGDCLNAKYLNIPP 445
R S+D+ +G +L I P
Sbjct: 205 AFRHPLSLDRPMGQEDEVDFLEILP 229
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 195 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 254
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 255 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 314
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 315 EKVLEIQQYAREPISLDQTIGD 336
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 116/211 (54%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ +ER + L + +G S++ + +S ++K+ L
Sbjct: 35 RVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLSTSIIKKRLRA 94
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 95 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 154
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+AKY L
Sbjct: 155 YWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPE 214
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ S++ K+GD + L++
Sbjct: 215 DDVKDLMCKAGQPVSLETKVGDGEDTVLLDL 245
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 120/202 (59%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE + G S A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + +E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +++ ++R +
Sbjct: 217 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEAEMAEALEITVHQLRQLQQL 276
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 277 RRQALSLNHRVGKEEDTELMDL 298
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 210 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 269
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 270 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 329
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 330 DKVLEIQQYAREPISLDQTIGD 351
>gi|359427064|ref|ZP_09218139.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
gi|358237677|dbj|GAB07721.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
Length = 491
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 251 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 310
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 311 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 370
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 371 EKVLEIQQYAREPISLDQTIGD 392
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 282 SERV-LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
S+R+ LK+H+ G R+ LI++ LV+ +A+ Y G+ DL+Q GN+G+++ E+F
Sbjct: 134 SDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKF 193
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D+T+G+KFSTY +WIR++I++ +A +R I++P + IS++++ L + + P
Sbjct: 194 DYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPT 253
Query: 401 DIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
EIA+ G++ +++R E S++ +G
Sbjct: 254 PEEIAEAMGITASKVRRTLEASMHPLSLEMPVG 286
>gi|56416704|ref|YP_153778.1| RNA polymerase sigma factor [Anaplasma marginale str. St. Maries]
gi|56387936|gb|AAV86523.1| RNA polymerase sigma factor [Anaplasma marginale str. St. Maries]
Length = 632
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 93/149 (62%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 385 IQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 444
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +W+R++I++ +A AR I+IP + ++KI + + + + G+ P E++
Sbjct: 445 YKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELS 504
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+++ +IR + ++ S++ IGD
Sbjct: 505 TRLGMNVEKIRKVMKIVKDPVSLESPIGD 533
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 96/163 (58%), Gaps = 8/163 (4%)
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
A G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFST
Sbjct: 179 AVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFST 238
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIA+ L
Sbjct: 239 YATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPTPEEIAEEMDL 298
Query: 411 SLAEIRS----ASECLRIVGSI----DQKIGDCLNAKYLNIPP 445
+ +R + E + + I D ++GD + +PP
Sbjct: 299 TPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDAAVVPP 341
>gi|313682108|ref|YP_004059846.1| RNA polymerase sigma-70 subunit RpoD [Sulfuricurvum kujiense DSM
16994]
gi|313154968|gb|ADR33646.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfuricurvum kujiense DSM
16994]
Length = 620
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 89/141 (63%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + HGK P+ IA+ GLS+ ++++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVETIAEEVGLSVEKVKNVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + ++
Sbjct: 505 KITKEPISLEAPIGNEEDGRF 525
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 108/188 (57%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L + L ++ + + WA AG++ L+Q + G + ++I++
Sbjct: 62 KRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTRSKRKMIEANLR 121
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + DL+Q G +G+ + ++FD T+G+KFSTY +WIR++I++ +A+
Sbjct: 122 LVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQ 181
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + +++KI+KA++ L+ S G+ EIA L ++R R
Sbjct: 182 QARTIRLPVHITEKLNKIKKAQRQLSQSLGRVATAAEIADALKLKPEQVREFLSMARQPV 241
Query: 427 SIDQKIGD 434
S+D +IGD
Sbjct: 242 SLDLRIGD 249
>gi|331003577|ref|ZP_08327074.1| hypothetical protein HMPREF0491_01936 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412418|gb|EGG91809.1| hypothetical protein HMPREF0491_01936 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 409
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 88/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 171 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 230
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A G++ +
Sbjct: 231 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANELGMTEEK 290
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 291 VMEIMQIAREPASLETPIGE 310
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
++I++ +A AR I++P + +++K++KA++ L + P + E+A+
Sbjct: 201 QAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAE 249
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 107/184 (58%), Gaps = 4/184 (2%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E + +Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS---LAEI 415
SI K + +++R I++P + + K+ KAR G+ P + +A+ G++ LA++
Sbjct: 396 SIKKSIFKNSRLIRLPESVYALLRKVGKARMECI-MEGEQPTNANVARRAGITIEKLAKL 454
Query: 416 RSAS 419
R+ +
Sbjct: 455 RAKT 458
>gi|313891780|ref|ZP_07825385.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
gi|329121139|ref|ZP_08249770.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
gi|313119774|gb|EFR42961.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
gi|327471301|gb|EGF16755.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
Length = 374
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 83/128 (64%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+L+ ++FD+T+GYKFSTY +WIR+SI++ +A
Sbjct: 154 LVVSIAKKYLGRGLQFLDLIQEGNLGLLKAVDKFDYTKGYKFSTYATWWIRQSITRAIAD 213
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I++P + I+K+ + + L G+ P + EIAK +S+ ++R + +
Sbjct: 214 QARTIRVPVHMVETINKLNRISRQLLQEKGREPTEYEIAKAMDVSVGKVREVKKIAQDPI 273
Query: 427 SIDQKIGD 434
S++ IG+
Sbjct: 274 SLETPIGE 281
>gi|410995981|gb|AFV97446.1| hypothetical protein B649_05660 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 619
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 89/141 (63%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + HGK P+ IA+ GLS+ ++++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVETIAEEVGLSVEKVKNVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + ++
Sbjct: 504 KITKEPISLEAPIGNEEDGRF 524
>gi|384172595|ref|YP_005553972.1| RNA polymerase sigma factor RpoD [Arcobacter sp. L]
gi|345472205|dbj|BAK73655.1| RNA polymerase sigma factor RpoD [Arcobacter sp. L]
Length = 628
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 89/146 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 393 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 452
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ EIAK GL + +++
Sbjct: 453 ISRAIADQARTIRIPIHMIETINRINKIIRKGIQENGKEPDVDEIAKEVGLPVDKVKQVI 512
Query: 420 ECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ + S++ IG + K+ + P
Sbjct: 513 KITKEPVSLEAPIGSDDDGKFGDFVP 538
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 85/139 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 148 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 207
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+ + R+ +G+ P E+AK G +I
Sbjct: 208 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKYGEEPSVEELAKMMGKPPEKI 267
Query: 416 RSASECLRIVGSIDQKIGD 434
+ E + S++ IG+
Sbjct: 268 KEILEAAKETISLESPIGE 286
>gi|289548873|ref|YP_003473861.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermocrinis albus
DSM 14484]
gi|289182490|gb|ADC89734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermocrinis
albus DSM 14484]
Length = 568
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 87/143 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ ++K LV+ +A+ Y G+ F DL+Q GN+G+++ +++D+ +GYKFSTY +W
Sbjct: 331 AKQVMVKCNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWW 390
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+ I KA K LT G+ P EIAKY G+ + +
Sbjct: 391 IRQAITRAIADQARTIRIPVHMIETINDITKAHKKLTQELGREPTAEEIAKYLGIPVDKA 450
Query: 416 RSASECLRIVGSIDQKIGDCLNA 438
R + S++ IGD +A
Sbjct: 451 RKVMRMAQEPISLETPIGDDEDA 473
>gi|216263390|ref|ZP_03435385.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia afzelii
ACA-1]
gi|215980234|gb|EEC21055.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia afzelii
ACA-1]
Length = 631
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 113/203 (55%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L + E ++K VQ +L IK L K+ + +L W+ A +++ L + + G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++I + LV+ +A+ Y+ + F DL+Q G +G+ + ++F GYKFSTY +W
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQEGTLGLERAVDKFQPALGYKFSTYAYWW 163
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+ I++ +++ +R I++P + +++KI++ ++ L+ G+ P EIA+ + ++I
Sbjct: 164 IRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPSVTEIAEVMEVKPSQI 223
Query: 416 RSASECLRIVGSIDQKIGDCLNA 438
R R S+D ++G+ N
Sbjct: 224 RDYLSLARKPMSLDVRVGEEQNT 246
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A+ E + V+ + E + L E G++ S+ WA A S R+ ++ +
Sbjct: 4 LLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWA--AACSPRLFREMMLTAKE 61
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ +++ LV+ +AR Y G+G+ DL+Q G++G+ + AE+FD +G+KFSTY +W
Sbjct: 62 AKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYASWW 121
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
I++++ + +A H+R I++P ++ ++K+++AR+ L G+ P + E+A
Sbjct: 122 IQQAVFRSIAYHSRTIRLPVHVHNLLNKVRRARQVLQQELGRTPTNEEMA 171
>gi|111115542|ref|YP_710160.1| RNA polymerase sigma factor RpoD [Borrelia afzelii PKo]
gi|384207197|ref|YP_005592919.1| RNA polymerase sigma factor RpoD [Borrelia afzelii PKo]
gi|110890816|gb|ABH01984.1| RNA polymerase sigma-70 factor [Borrelia afzelii PKo]
gi|342857081|gb|AEL69929.1| RNA polymerase sigma factor RpoD [Borrelia afzelii PKo]
Length = 631
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|315638945|ref|ZP_07894116.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
gi|315480974|gb|EFU71607.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
Length = 657
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 88/141 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 420 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 479
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ +IAK GLS+ +++
Sbjct: 480 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKNGKEPDVNDIAKEVGLSVDKVKQVI 539
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + K+
Sbjct: 540 KITKEPISLEAPIGSEDDGKF 560
>gi|365855968|ref|ZP_09395996.1| RNA polymerase sigma factor RpoD [Acetobacteraceae bacterium
AT-5844]
gi|363718536|gb|EHM01872.1| RNA polymerase sigma factor RpoD [Acetobacteraceae bacterium
AT-5844]
Length = 600
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 260 TTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
LE+E+G AA+ L A ER +++ +EEL+++ LV+ +A+ YR
Sbjct: 333 AALEQENGLAAARLRQVCDAVAQGERQMRR-------AKEELVQANLRLVVHIAKRYRNR 385
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLN 378
G+ F DL+Q GN+G+++ E+FD RG+KF TY +W+R++I++ +A +R I++P +
Sbjct: 386 GLMFGDLIQEGNIGLMRAVEKFDWRRGFKFGTYATWWVRQAITRSIADQSRTIRVPVHMT 445
Query: 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+K+ + + G+ P E+A G+S ++R+ R S++ IG+
Sbjct: 446 ETAAKVARTSRRFAQKAGREPTPEELANELGMSADKVRTVQRLAREPISLEAPIGE 501
>gi|345008771|ref|YP_004811125.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344035120|gb|AEM80845.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 334
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 92/159 (57%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A AAG S L A G ++ I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 78 APAAGASREELAAIAAEGARAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 137
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
E+FD+T+G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ H
Sbjct: 138 AVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREH 197
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+ PE EIA G ++ + + R S++ + D
Sbjct: 198 GREPEHAEIAVELGSTMERVSDVLDWARDPVSLNMSVDD 236
>gi|269958878|ref|YP_003328667.1| RNA polymerase sigma factor [Anaplasma centrale str. Israel]
gi|269848709|gb|ACZ49353.1| RNA polymerase sigma factor [Anaplasma centrale str. Israel]
Length = 649
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 93/149 (62%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 402 IQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 461
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +W+R++I++ +A AR I+IP + ++KI + + + + G+ P E++
Sbjct: 462 YKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELS 521
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+++ +IR + ++ S++ IGD
Sbjct: 522 ARLGMNVEKIRKVMKIVKDPVSLESPIGD 550
>gi|222475070|ref|YP_002563485.1| RNA polymerase sigma factor [Anaplasma marginale str. Florida]
gi|255003048|ref|ZP_05278012.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str. Puerto
Rico]
gi|255004170|ref|ZP_05278971.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str.
Virginia]
gi|222419206|gb|ACM49229.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str.
Florida]
Length = 646
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 93/149 (62%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 399 IQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 458
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +W+R++I++ +A AR I+IP + ++KI + + + + G+ P E++
Sbjct: 459 YKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELS 518
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G+++ +IR + ++ S++ IGD
Sbjct: 519 TRLGMNVEKIRKVMKIVKDPVSLESPIGD 547
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KES KA WA + +S LKQ L G R+ +I++ LV+ +A+ Y+ G+
Sbjct: 105 KESLKAGH-EAWATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELL 163
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q G +G+ + E++D TRG++FSTY +WIR+ I++ +A +R I++P + ++++
Sbjct: 164 DLVQEGTLGLERAVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNR 223
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDC 435
I+KA++ + + HG+ ++AK GLS I RS S R+ D ++GD
Sbjct: 224 IKKAQRQIASEHGRLASVADLAKELGLSEEVIRLTLMRVPRSVSLDTRVGRDQDTELGDL 283
Query: 436 LN 437
L
Sbjct: 284 LE 285
>gi|330466466|ref|YP_004404209.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
gi|328809437|gb|AEB43609.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
Length = 335
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 113/208 (54%), Gaps = 16/208 (7%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVL 286
LN GR +L A E E++K ++ E TT S + A L AQ
Sbjct: 43 LNGIGRTKLLTAAQEVELAKRIEAGLFAEEKLTTCTPVSAQLQADLTLIAQE-------- 94
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
G + L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GY
Sbjct: 95 ------GQAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGY 148
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
KFSTY +WIR++I++ +A AR I+IP + +++++ +AR+ L+ S G+ P EIA+
Sbjct: 149 KFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELSVSLGREPSVAEIAR 208
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ R S+DQ +G+
Sbjct: 209 ALDVPEFQVIELISYDREPVSLDQTVGE 236
>gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
gi|340534454|gb|AEK36934.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
Length = 536
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 8/171 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KESG+ S + +R L++ G + L+++ LV+ LA+ Y G G+ F
Sbjct: 275 KESGEKVS--------PMQKRDLREIDRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFL 326
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 327 DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK 386
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P E+AK ++ ++ + R S+DQ IGD
Sbjct: 387 LGRIQRELLQDLGREPTPEELAKEMDITEDKVLEIQQYAREPISLDQTIGD 437
>gi|310827637|ref|YP_003959994.1| RNA polymerase [Eubacterium limosum KIST612]
gi|308739371|gb|ADO37031.1| RNA polymerase [Eubacterium limosum KIST612]
Length = 395
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK L Q G+++R+ A ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 131 KEIGKVPLLTA-EQEMGIAKRME----AGDDEAKKELAEANLRLVVSIAKRYVGRGMSFL 185
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 186 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 245
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + + L G+ P EI K G S ++R + + S++ IG+
Sbjct: 246 LIRVSRQLLQELGREPTPAEIGKEMGFSEEKVREIQKIAQDPVSLETPIGE 296
>gi|283779933|ref|YP_003370688.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pirellula staleyi
DSM 6068]
gi|283438386|gb|ADB16828.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pirellula staleyi
DSM 6068]
Length = 545
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 81/128 (63%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ ++F++ RGYKFSTY +WIR++I++ +A
Sbjct: 303 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEYARGYKFSTYATWWIRQAITRAIAD 362
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P + +SK++ + L G+ P E+A+ GL+L + R + R
Sbjct: 363 QSRTIRVPVHMIDTMSKVRAVTRQLVQELGREPTPEEVARVAGLTLDDARCVLKMARQPL 422
Query: 427 SIDQKIGD 434
S+DQ +GD
Sbjct: 423 SLDQPVGD 430
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 116/211 (54%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLE--KESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G QV +E + LE + +G S++ + +S ++K+ L
Sbjct: 46 RVPLLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRA 105
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 106 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+AKY L
Sbjct: 166 YWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPE 225
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ S++ K+GD + L++
Sbjct: 226 DDVKDLMCKAGQPVSLETKVGDGEDTVLLDL 256
>gi|254232809|ref|ZP_04926136.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
gi|124601868|gb|EAY60878.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
Length = 528
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 89/147 (60%), Gaps = 6/147 (4%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+ +++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLRLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S+DQ IGD
Sbjct: 403 MDITPEKVLEIQQYAREPISLDQTIGD 429
>gi|395236968|ref|ZP_10415097.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
gi|394487840|emb|CCI83185.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
Length = 429
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 189 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 248
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ ++
Sbjct: 249 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAREMDITE 308
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 309 DKVLEIQQYAREPISLDQTIGD 330
>gi|427412602|ref|ZP_18902794.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
gi|425716409|gb|EKU79393.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
Length = 394
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 94/156 (60%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG + + + G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 141 AGAKDDASYKEMKAGEKAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 200
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 201 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 260
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P EIA+ G+S+ +R + + S++ IG+
Sbjct: 261 PLPEEIAEGMGISVERVREIQKIAQEPVSLETPIGE 296
>gi|313672395|ref|YP_004050506.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939151|gb|ADR18343.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calditerrivibrio
nitroreducens DSM 19672]
Length = 337
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 87/150 (58%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E +I LV+ +A+ Y G+P DL+ GN+G+++ E+FD+ +G+KFSTY +W
Sbjct: 99 AKETMINCNLRLVVSIAKKYANKGVPLEDLISEGNIGLIRAVEKFDYRKGFKFSTYATWW 158
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I + + + + +++P + I KI KA+ L + G+ P E++ YTG++L+ I
Sbjct: 159 IRQAIERAIIANTKIVRVPVHVLEYIKKILKAKSELQETLGRNPTYTELSTYTGITLSNI 218
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
A E +R SID I + N+ P
Sbjct: 219 YKAVEAMRHDVSIDAPISEDEQENMHNLIP 248
>gi|163846411|ref|YP_001634455.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222524178|ref|YP_002568649.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163667700|gb|ABY34066.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222448057|gb|ACM52323.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 313
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 85/138 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R +LI S LV+ +AR Y+G G+ DL+Q G+VG+++ ++FD +RG KFSTY
Sbjct: 71 GEQARAQLINSNLRLVVSIARRYQGHGLSLLDLIQEGSVGLMRAVDKFDASRGLKFSTYA 130
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
YWIR+SI + +A H+R +++P L +S++ + R+ L+ + P E+A+ GLS+
Sbjct: 131 TYWIRQSIGRAIADHSRTVRLPVHLGERLSRLSRLRQELSQQLDREPTLEELAQAAGLSV 190
Query: 413 AEIRSASECLRIVGSIDQ 430
++ A + S+D+
Sbjct: 191 EQVERAEQAGLAPTSLDE 208
>gi|296272949|ref|YP_003655580.1| RpoD subfamily RNA polymerase sigma-70 factor subunit [Arcobacter
nitrofigilis DSM 7299]
gi|296097123|gb|ADG93073.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Arcobacter
nitrofigilis DSM 7299]
Length = 626
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 89/150 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ + KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +W
Sbjct: 387 AKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 446
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + +GK P EIAK GL + ++
Sbjct: 447 IRQAISRAIADQARTIRIPIHMIETINRINKIIRKGIQENGKEPNVDEIAKEVGLPVDKV 506
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPP 445
+ + + S++ IG + K+ + P
Sbjct: 507 KQVIKITKEPVSLEAPIGSDEDGKFGDFVP 536
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 117/211 (55%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ +ERI+ + + +G+ S++ + ++ +K+ L
Sbjct: 46 RVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTTSTIKKRLRA 105
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 106 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+AKY L
Sbjct: 166 YWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPE 225
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ S++ K+GD + L++
Sbjct: 226 DDVKDLMCKAGQPVSLETKVGDGEDTVLLDL 256
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 34/208 (16%)
Query: 262 LEKESGKAASLNCWAQAAGVSERVLKQHLAFG---W-------------------YCREE 299
L E G SL WA +AG+S LK LA G W + +E
Sbjct: 121 LTSELGHRPSLERWAASAGISVMELKPALAVGKRRWAEIAKITVEELEQIQNDGIHAKEH 180
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+
Sbjct: 181 MIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQG 240
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A +R I++P + +++KI+KA++ L G+ P +IA ++ ++R
Sbjct: 241 ITRAIATQSRTIRLPVHITEKLNKIKKAQRKLAQEKGRTPTIEDIALELEMTAPQVREV- 299
Query: 420 ECLRIVGSI----------DQKIGDCLN 437
LR+ S+ D ++GD L
Sbjct: 300 -LLRVPRSVSLETKVGKEKDTELGDLLE 326
>gi|305681425|ref|ZP_07404232.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
gi|305659630|gb|EFM49130.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
Length = 608
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 368 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 427
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K ++
Sbjct: 428 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPYELSKEMDITE 487
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 488 DKVLEIQQYAREPISLDQTIGD 509
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 189 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 248
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 249 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 308
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 309 DKVLEIQQYAREPISLDQTIGD 330
>gi|225021265|ref|ZP_03710457.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
gi|224945998|gb|EEG27207.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
Length = 617
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 377 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 436
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K ++
Sbjct: 437 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPYELSKEMDITE 496
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 497 DKVLEIQQYAREPISLDQTIGD 518
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 96/163 (58%), Gaps = 2/163 (1%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
N RI+ L E GK WA+A +S L ++L RE L+ + LV+ +A+
Sbjct: 293 NATRIQ--LRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQRARESLVAANLRLVVSVAK 350
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
+ G+ DL+Q G++G+++GAERFD+ G++FSTY +WIR+++ + +A +R I+I
Sbjct: 351 QFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTYAMWWIRQAMQRAIADTSRPIRI 410
Query: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIR 416
P + +I +AR L+++ G+ P D E+A + +S+ ++
Sbjct: 411 PSTITDLSVQIYRARLELSSTLGRDPTDAELADFLDISVQRLQ 453
>gi|336325731|ref|YP_004605697.1| RNA polymerase sigma factor A [Corynebacterium resistens DSM 45100]
gi|336101713|gb|AEI09533.1| RNA polymerase sigma factor A [Corynebacterium resistens DSM 45100]
Length = 571
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 331 GRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYA 390
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ +++
Sbjct: 391 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPSPEELAREMDITV 450
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 451 DKVLEIQQYAREPISLDQTIGD 472
>gi|172040581|ref|YP_001800295.1| RNA polymerase sigma factor [Corynebacterium urealyticum DSM 7109]
gi|171851885|emb|CAQ04861.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7109]
Length = 545
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 89/142 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 305 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 364
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ +++
Sbjct: 365 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITV 424
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 425 DKVLEIQQYAREPISLDQTIGD 446
>gi|149175263|ref|ZP_01853885.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
gi|148845872|gb|EDL60213.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
Length = 561
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 85/134 (63%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFSTY +WIR++I++ +A
Sbjct: 311 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIAD 370
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + +SK++K K L +G+ P E A+ G+SL E R + R
Sbjct: 371 QARTIRIPVHMIETMSKLRKVSKQLLQENGREPTLEETAEVAGISLEETRRVLKISRHPI 430
Query: 427 SIDQKIGDCLNAKY 440
S+D+ +G+ ++ +
Sbjct: 431 SLDRPVGESEDSYF 444
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 114/206 (55%), Gaps = 1/206 (0%)
Query: 229 LNSRGRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN+ GR I E E+S+ +Q +++ + ++ G+ S A A + L+
Sbjct: 56 LNTIGRVPRIDHAEEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLR 115
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ G + +LI + LV+ +A+ Y G+PF DL+Q GN+G+++ E+F+ RG++
Sbjct: 116 SRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFR 175
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR+ I++ +A AR I++P + ++ +++ + L + G+ P + E+A+
Sbjct: 176 FSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEA 235
Query: 408 TGLSLAEIRSASECLRIVGSIDQKIG 433
G+ + ++R + + S+D +G
Sbjct: 236 LGIKVKKLRMIQQAAALPLSLDVPVG 261
>gi|386854112|ref|YP_006203397.1| RNA polymerase sigma factor RpoD [Borrelia garinii BgVir]
gi|365194146|gb|AEW69044.1| RpoD [Borrelia garinii BgVir]
Length = 631
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 99/161 (61%)
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
N W+Q + ++ L ++++++S LV+ +A+ Y G+ F DL+Q G++G
Sbjct: 166 NEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLG 225
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+
Sbjct: 226 LIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLS 285
Query: 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
+ P + EIA+ +++ ++R ++ ++ S++ IG
Sbjct: 286 QEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIG 326
>gi|260578861|ref|ZP_05846767.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
gi|258603008|gb|EEW16279.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
Length = 552
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 312 GRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYA 371
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ +++
Sbjct: 372 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITV 431
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 432 DKVLEIQQYAREPISLDQTIGD 453
>gi|429730654|ref|ZP_19265300.1| RNA polymerase sigma factor RpoD [Corynebacterium durum F0235]
gi|429147092|gb|EKX90122.1| RNA polymerase sigma factor RpoD [Corynebacterium durum F0235]
Length = 487
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 247 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 306
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K ++
Sbjct: 307 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPYELSKEMDITE 366
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 367 EKVLEIQQYAREPISLDQTIGD 388
>gi|227549126|ref|ZP_03979175.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078794|gb|EEI16757.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
Length = 520
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 280 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 339
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 340 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 399
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 400 EKVLEIQQYAREPISLDQTIGD 421
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 122/205 (59%), Gaps = 6/205 (2%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG---VSERVLKQHLAFGWYCRE 298
E E+++ V+ + + ++ L+ + G+ + AQ AG ++E+ L+ L G +
Sbjct: 98 EVELARRVRFLEEVRDLQADLQLQIGQHPT---KAQVAGQLEITEKQLENRLYQGRVAKR 154
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+
Sbjct: 155 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQ 214
Query: 359 SISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418
+I++ +A AR I++P + +++K++KA++ L + P + E+A+ +S+ ++R
Sbjct: 215 AITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQLRQL 274
Query: 419 SECLRIVGSIDQKIGDCLNAKYLNI 443
+ R S++ ++G + + +++
Sbjct: 275 QQLRRQALSLNHRVGKEEDTELMDL 299
>gi|154148465|ref|YP_001406295.1| RNA polymerase sigma factor RpoD [Campylobacter hominis ATCC
BAA-381]
gi|153804474|gb|ABS51481.1| RNA polymerase sigma factor RpoD (Sigma-A) (Major vegetative
sigmafactor) [Campylobacter hominis ATCC BAA-381]
Length = 624
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 88/141 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 389 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQA 448
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ +AK GLS+ +I+
Sbjct: 449 ISRAIADQARTIRIPIHMIETINRINKINRKYVQENGKEPDITILAKEVGLSIDKIKQVI 508
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ +G+ + K+
Sbjct: 509 KITKEPISLEAPVGNEDDGKF 529
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 109/174 (62%)
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
++ + WA+A +SE+ L++ +A G + ++I++ LV+ +A+ Y+ + F DL+Q G
Sbjct: 66 STFSEWAEAIKLSEKELRRAVAVGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEG 125
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P + +++KI+K ++
Sbjct: 126 SLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQR 185
Query: 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
L+ G+ EIA+ L +IR R S+D ++GD + + +++
Sbjct: 186 QLSQDLGRAATIAEIAEELELEPEKIREFFRVSRHPISLDVRVGDNKDTELMDL 239
>gi|68536164|ref|YP_250869.1| RNA polymerase sigma factor [Corynebacterium jeikeium K411]
gi|68263763|emb|CAI37251.1| RNA polymerase sigma factor A [Corynebacterium jeikeium K411]
Length = 544
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 304 GRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYA 363
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ +++
Sbjct: 364 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITV 423
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 424 DKVLEIQQYAREPISLDQTIGD 445
>gi|345000232|ref|YP_004803086.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344315858|gb|AEN10546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 333
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 97/168 (57%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
++A G L+ +A G ++ I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 SEAGGAKREELEALVAEGERAKDIFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
E+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ H
Sbjct: 137 AVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREH 196
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
G+ PE EIA G + + + + R S++ + D + ++ ++
Sbjct: 197 GRDPEHAEIAAELGSNTERVGNVLDWARDPVSLNMSVDDDGDTQFGDL 244
>gi|51598964|ref|YP_073152.1| RNA polymerase sigma factor RpoD [Borrelia garinii PBi]
gi|51573535|gb|AAU07560.1| RNA polymerase sigma-70 factor [Borrelia garinii PBi]
Length = 631
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|257063660|ref|YP_003143332.1| RNA polymerase sigma factor RpoD [Slackia heliotrinireducens DSM
20476]
gi|256791313|gb|ACV21983.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 394
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 152 VGLDAKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTY 211
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EI + GLS
Sbjct: 212 ATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIGEKMGLS 271
Query: 412 LAEIRSASECLRIVGSIDQKIGDCLNAKYLN-------IPPFFFPSFAIWE 455
+R + + S++ IG+ +++ + I P SFA+ +
Sbjct: 272 AERVREIQKLSQEPVSLETPIGEEEDSQLGDFIEDDSAIVPVDAASFAMMQ 322
>gi|219685543|ref|ZP_03540360.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii
Far04]
gi|219672942|gb|EED29964.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii
Far04]
Length = 631
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|451944378|ref|YP_007465014.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
gi|451903765|gb|AGF72652.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
Length = 517
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 396
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 397 EKVLEIQQYAREPISLDQTIGD 418
>gi|419643191|ref|ZP_14174950.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni ATCC 33560]
gi|380622903|gb|EIB41636.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni ATCC 33560]
Length = 622
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSIDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 106/179 (59%), Gaps = 8/179 (4%)
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
AA WA+ AG+S + L+Q + G +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 151 AAGKQRWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQE 210
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKAR 388
G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA+
Sbjct: 211 GTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQ 270
Query: 389 KALTNSHGKYP--EDIEIA-KYTGLSLAEI-----RSASECLRIVGSIDQKIGDCLNAK 439
+ ++ G+ EDI + + T + E+ RS S +++ D ++GD L +
Sbjct: 271 RKISQEKGRTATIEDIALELEMTKEQVREVLLRVPRSVSLEIKVGKEKDTELGDLLETE 329
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
WA+ + +S LKQ L G R+ +I++ LV+ +A+ Y+ G+ DL+Q G +G
Sbjct: 113 QAWAEHSNLSVAELKQALHHGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLG 172
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+ + E++D TRG++FSTY +WIR+ I++ +A +R I++P + ++++I+KA++ +
Sbjct: 173 LERAVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRQIA 232
Query: 393 NSHGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLNAKY 440
HG+ ++A+ GLS + RS S R+ D ++GD L +
Sbjct: 233 TEHGRLASVSDLARELGLSEEVVRLTLMRVPRSVSLDTRVGREQDTQLGDLLEDSH 288
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 92/151 (60%), Gaps = 4/151 (2%)
Query: 287 KQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
K+ LAF G R+ L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+
Sbjct: 80 KRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 139
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+G+KFSTY +WIR++I++ +A +R I++P L +++K+ + R+ L G+ D
Sbjct: 140 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDA 199
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
E+A +G+ +I + R S+D +G
Sbjct: 200 ELAAESGIPAEKIADLMDHSRDPVSLDMPVG 230
>gi|300781032|ref|ZP_07090886.1| RNA polymerase sigma factor rpoD [Corynebacterium genitalium ATCC
33030]
gi|300532739|gb|EFK53800.1| RNA polymerase sigma factor rpoD [Corynebacterium genitalium ATCC
33030]
Length = 536
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 296 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 355
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++
Sbjct: 356 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITE 415
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 416 EKVLEIQQYAREPISLDQTIGD 437
>gi|23978350|dbj|BAC21142.1| principal sigma factor [Xenococcus sp. PCC 7307]
Length = 203
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 87/133 (65%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|408671317|ref|YP_006871388.1| RNA polymerase sigma factor RpoD [Borrelia garinii NMJW1]
gi|407241139|gb|AFT84022.1| RNA polymerase sigma factor RpoD [Borrelia garinii NMJW1]
Length = 628
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 314 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 373
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 374 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 423
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 424 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 483
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 484 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 526
>gi|338731696|ref|YP_004661088.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermotoga
thermarum DSM 5069]
gi|335366047|gb|AEH51992.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
thermarum DSM 5069]
Length = 394
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 87/139 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++LI+S LV+ +A+ Y G G+PF DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 150 AKKKLIQSNLRLVVSIAKKYMGRGLPFLDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 209
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I++P + I+K+ + + +HG+ P E+AK + +I
Sbjct: 210 IRQAITRAIADQARTIRVPVHMVETINKLNRIIREYQQTHGEPPTVEELAKIMDKPVEKI 269
Query: 416 RSASECLRIVGSIDQKIGD 434
+ + + S++ +G+
Sbjct: 270 EEIMQAAKEIISLEAPVGE 288
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 93/155 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LKQ L + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 371 LKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 430
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + I+K+ + +K L G+ P EIA
Sbjct: 431 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIA 490
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
T +S+ IR+ + + S+ ++G+ + +
Sbjct: 491 DETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTF 525
>gi|219684458|ref|ZP_03539402.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii PBr]
gi|219672447|gb|EED29500.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii PBr]
Length = 631
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|399156454|ref|ZP_10756521.1| RpoD subfamily RNA polymerase sigma-70 subunit [SAR324 cluster
bacterium SCGC AAA001-C10]
Length = 596
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 257 RIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYR 316
RI T +E+ + + N ++ ER +K + +L+++ LV+ +A+ Y
Sbjct: 327 RISTMIEQTTLSLDNFNLEVKSLKQVERRVKS-------AKSQLVEANLRLVISIAKKYT 379
Query: 317 GLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCK 376
G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR+SI++ +A AR I+IP
Sbjct: 380 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQSITRAIADQARTIRIPVH 439
Query: 377 LNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ I+K+ + +A G+ P E+++ G+ L ++R + + S+D IGD
Sbjct: 440 MIETINKLSRISRAKVQELGREPTADELSEDLGMPLYKVRKVLKIAKEPISLDTPIGD 497
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 90/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ L + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQNLGREATDEELAEESGIPI 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 DKINDLLEHSRDPVSLDMPVG 219
>gi|423350088|ref|ZP_17327741.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
gi|404387950|gb|EJZ83041.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
Length = 573
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 333 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 392
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ ++
Sbjct: 393 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAREMDITE 452
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 453 DKVLEIQQYAREPISLDQTIGD 474
>gi|424820434|ref|ZP_18245472.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp.
venerealis NCTC 10354]
gi|342327213|gb|EGU23697.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp.
venerealis NCTC 10354]
Length = 623
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 86/141 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 387 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 446
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA+ GLS+ +++
Sbjct: 447 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSIIAREVGLSIDKVKQVI 506
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + KY
Sbjct: 507 KITKEPISLEAPIGSEDDGKY 527
>gi|23978372|dbj|BAC21150.1| principal sigma factor [Synechococcus sp. PCC 7001]
Length = 203
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 88/133 (66%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSKFRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA+ +++ ++R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|219849586|ref|YP_002464019.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219543845|gb|ACL25583.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 314
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 85/145 (58%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L +A G R +LI S LV+ +AR Y+G G+ DL+Q G++G+++ ++FD RG
Sbjct: 64 LAAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRG 123
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
KFSTY YWIR+SI + +A H+R +++P L +S++ + R+ L + P E+A
Sbjct: 124 LKFSTYATYWIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEELA 183
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQ 430
GLS+ ++ A + S+D+
Sbjct: 184 NAAGLSVEQVERAEQAGLAPTSLDE 208
>gi|118475308|ref|YP_891711.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp. fetus
82-40]
gi|118414534|gb|ABK82954.1| RNA polymerase sigma factor [Campylobacter fetus subsp. fetus
82-40]
Length = 623
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 86/141 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 387 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQA 446
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA+ GLS+ +++
Sbjct: 447 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSIIAREVGLSIDKVKQVI 506
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + KY
Sbjct: 507 KITKEPISLEAPIGSEDDGKY 527
>gi|386838431|ref|YP_006243489.1| RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374098732|gb|AEY87616.1| putative RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451791723|gb|AGF61772.1| putative RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 311
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 236 LTIARNEAEMSK----GVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
L A +E +++ GV A LER + ESG A R L+ +
Sbjct: 23 LLTAEDEVRLARSIEAGVDAAAELERAG---DGESGPAPH----------RRRELEAAVR 69
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + ++ +I++ LV+ +A+ + G+P D++Q GN+G+++ E+FDH +G+KFSTY
Sbjct: 70 EGLHAKDHMIRANLRLVVSIAKRHAHRGVPLLDVIQEGNLGLIRAVEKFDHAKGFKFSTY 129
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I + +A+HAR +++P + E+ K+ KA + L G P D E+A+ +G
Sbjct: 130 ATWWIRQAIERGLAQHARTVRLPMHVVEELQKLAKAERRLYLRLGHEPTDDEVARESGFG 189
Query: 412 LAEIRSASECLRIVGSIDQKIGDC 435
+ R S+D + D
Sbjct: 190 EGRVAWLRRVGRQTLSLDTPVDDT 213
>gi|23308878|ref|NP_601117.2| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|21324681|dbj|BAB99304.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigA)
[Corynebacterium glutamicum ATCC 13032]
gi|385144017|emb|CCH25056.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 498
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 258 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 317
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 318 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 377
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 378 EKVLEIQQYAREPISLDQTIGD 399
>gi|23978340|dbj|BAC21139.1| principal sigma factor [Stanieria cyanosphaera str. PCC 7437]
Length = 203
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 87/133 (65%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|1553027|gb|AAC45105.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|1553011|gb|AAC45097.1| primary sigma factor, partial [Borrelia afzelii]
Length = 450
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|417971564|ref|ZP_12612487.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
gi|344044046|gb|EGV39727.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
Length = 494
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 373
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 374 EKVLEIQQYAREPISLDQTIGD 395
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 258 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 317
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 318 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 377
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 378 EKVLEIQQYAREPISLDQTIGD 399
>gi|57237826|ref|YP_179074.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni RM1221]
gi|86150708|ref|ZP_01068924.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86152585|ref|ZP_01070790.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612947|ref|YP_001000680.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157415258|ref|YP_001482514.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81116]
gi|167005602|ref|ZP_02271360.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205356712|ref|ZP_03223473.1| RNA polymerase sigma factor (sigma 70) [Campylobacter jejuni subsp.
jejuni CG8421]
gi|315124489|ref|YP_004066493.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|415745354|ref|ZP_11474810.1| Phosphatidylserine decarboxylase [Campylobacter jejuni subsp.
jejuni 327]
gi|419618734|ref|ZP_14152265.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 129-258]
gi|419634754|ref|ZP_14167081.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 55037]
gi|419652763|ref|ZP_14183822.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|419653797|ref|ZP_14184758.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|419658496|ref|ZP_14189124.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|419660252|ref|ZP_14190731.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|419664739|ref|ZP_14194818.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|419669090|ref|ZP_14198886.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|419686801|ref|ZP_14215224.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1798]
gi|419688243|ref|ZP_14216570.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1854]
gi|419696468|ref|ZP_14224324.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|419698309|ref|ZP_14226026.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23211]
gi|424847537|ref|ZP_18272103.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NW]
gi|424850423|ref|ZP_18274836.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni D2600]
gi|57166630|gb|AAW35409.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni RM1221]
gi|85841878|gb|EAQ59124.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843470|gb|EAQ60680.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249244|gb|EAQ72205.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157386222|gb|ABV52537.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81116]
gi|205345450|gb|EDZ32092.1| RNA polymerase sigma factor (sigma 70) [Campylobacter jejuni subsp.
jejuni CG8421]
gi|315018211|gb|ADT66304.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315932129|gb|EFV11072.1| Phosphatidylserine decarboxylase [Campylobacter jejuni subsp.
jejuni 327]
gi|356485168|gb|EHI15170.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NW]
gi|356487105|gb|EHI17078.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni D2600]
gi|380594377|gb|EIB15176.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 129-258]
gi|380614048|gb|EIB33497.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 55037]
gi|380628125|gb|EIB46460.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|380632119|gb|EIB50237.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|380633391|gb|EIB51350.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|380637213|gb|EIB54861.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|380644419|gb|EIB61601.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|380647961|gb|EIB64844.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|380663543|gb|EIB79178.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1798]
gi|380666110|gb|EIB81664.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1854]
gi|380674237|gb|EIB89181.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|380675471|gb|EIB90374.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23211]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|419682848|ref|ZP_14211567.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1213]
gi|380660859|gb|EIB76793.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1213]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|86150479|ref|ZP_01068704.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596833|ref|ZP_01100070.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 84-25]
gi|148926089|ref|ZP_01809775.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni CG8486]
gi|218562617|ref|YP_002344396.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|384443357|ref|YP_005659609.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni S3]
gi|384448250|ref|YP_005656301.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni IA3902]
gi|403055740|ref|YP_006633145.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
gi|407942388|ref|YP_006858030.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni PT14]
gi|415730018|ref|ZP_11472777.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|419620650|ref|ZP_14154072.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51494]
gi|419623441|ref|ZP_14156569.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|419628307|ref|ZP_14161174.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|419630036|ref|ZP_14162743.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 60004]
gi|419631185|ref|ZP_14163780.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|419636726|ref|ZP_14168916.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|419638535|ref|ZP_14170595.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 86605]
gi|419645079|ref|ZP_14176642.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|419647136|ref|ZP_14178575.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 53161]
gi|419648514|ref|ZP_14179853.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|419649899|ref|ZP_14181130.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|419656582|ref|ZP_14187370.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|419661347|ref|ZP_14191674.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|419664484|ref|ZP_14194631.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|419666681|ref|ZP_14196674.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|419671602|ref|ZP_14201255.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|419674574|ref|ZP_14203861.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 110-21]
gi|419678056|ref|ZP_14207158.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87330]
gi|419678314|ref|ZP_14207374.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87459]
gi|419680718|ref|ZP_14209572.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 140-16]
gi|419690985|ref|ZP_14219170.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1893]
gi|419692129|ref|ZP_14220228.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1928]
gi|85839074|gb|EAQ56338.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88191674|gb|EAQ95646.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360323|emb|CAL35119.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|145845568|gb|EDK22660.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni CG8486]
gi|284926231|gb|ADC28583.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315058444|gb|ADT72773.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni S3]
gi|315928360|gb|EFV07675.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|380599113|gb|EIB19493.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51494]
gi|380600963|gb|EIB21286.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|380604951|gb|EIB24943.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|380606452|gb|EIB26364.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 60004]
gi|380611301|gb|EIB30855.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|380616752|gb|EIB35941.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|380618603|gb|EIB37727.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 86605]
gi|380621005|gb|EIB39847.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|380621833|gb|EIB40614.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 53161]
gi|380626343|gb|EIB44820.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|380629159|gb|EIB47430.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|380634705|gb|EIB52571.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|380640434|gb|EIB57891.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|380640931|gb|EIB58354.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|380647269|gb|EIB64191.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|380649180|gb|EIB65933.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|380652252|gb|EIB68749.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87330]
gi|380652855|gb|EIB69311.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 110-21]
gi|380659712|gb|EIB75679.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 140-16]
gi|380661003|gb|EIB76927.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87459]
gi|380667836|gb|EIB83238.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1893]
gi|380670866|gb|EIB86110.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1928]
gi|401781392|emb|CCK67096.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
gi|407906226|gb|AFU43055.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni PT14]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 124/220 (56%), Gaps = 13/220 (5%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ ++++ + E ++ L ++ + SL W QA + ++Q + +
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQ--VRQFEIWLYQ 128
Query: 296 CR---EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
R +I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY
Sbjct: 129 LRAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGYKFSTYA 188
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I++P + +++KI+KA+++L + P + E+A ++
Sbjct: 189 YWWIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGELAAALDITP 248
Query: 413 AEIRSASECLRIVGSIDQKIG--------DCLNAKYLNIP 444
A++R + R S++ ++G D L + L +P
Sbjct: 249 AQLRQLLQLRRQSLSLNHRVGKGEDTELVDLLEDQQLQLP 288
>gi|419672484|ref|ZP_14201979.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51037]
gi|380655692|gb|EIB71998.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51037]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 116/211 (54%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ + L K+ + WA+ +S L+ L
Sbjct: 33 RVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSVAQLQHILHQ 92
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 93 GQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 152
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P + +++KI+KA++ L G+ E+A L+
Sbjct: 153 YWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTP 212
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+IR E R+ S+D ++GD + + +++
Sbjct: 213 KQIREYLEKSRLPLSLDLRVGDNQDTELVDL 243
>gi|224370025|ref|YP_002604189.1| protein RpoD [Desulfobacterium autotrophicum HRM2]
gi|223692742|gb|ACN16025.1| RpoD [Desulfobacterium autotrophicum HRM2]
Length = 618
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y + EL+++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 379 YAKSELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 438
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + + L GK P EIA+ + L +
Sbjct: 439 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEMGKEPSPEEIAEKMEIPLDK 498
Query: 415 IRSASECLRIVGSIDQKIG---DCLNAKYLNIPPFFFPSFA 452
+R + R S++ IG D ++ F PS A
Sbjct: 499 VRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFSLPSEA 539
>gi|145295815|ref|YP_001138636.1| RNA polymerase sigma factor [Corynebacterium glutamicum R]
gi|140845735|dbj|BAF54734.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 494
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 373
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 374 EKVLEIQQYAREPISLDQTIGD 395
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 373
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 374 EKVLEIQQYAREPISLDQTIGD 395
>gi|317511465|ref|ZP_07968785.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
305]
gi|315929035|gb|EFV08275.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
305]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|224534471|ref|ZP_03675047.1| RNA polymerase sigma factor RpoD [Borrelia spielmanii A14S]
gi|224514148|gb|EEF84466.1| RNA polymerase sigma factor RpoD [Borrelia spielmanii A14S]
Length = 631
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|419685146|ref|ZP_14213714.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1577]
gi|380665070|gb|EIB80649.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1577]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|358068536|ref|ZP_09154998.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
gi|356693353|gb|EHI55032.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
Length = 427
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 92/148 (62%)
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
K+ A Y +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+
Sbjct: 182 KRKQAGDEYAKQKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGF 241
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
K STY +WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+AK
Sbjct: 242 KLSTYATWWIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLQLGYEPSVSELAK 301
Query: 407 YTGLSLAEIRSASECLRIVGSIDQKIGD 434
++ ++ + R S++ IG+
Sbjct: 302 ALDMTDEKVMEIMQIAREPASLETPIGE 329
>gi|1553025|gb|AAC45104.1| primary sigma factor, partial [Borrelia garinii]
gi|1553031|gb|AAC45107.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|62390750|ref|YP_226152.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|41326088|emb|CAF20251.1| RNA POLYMERASE SIGMA 70 FACTOR [Corynebacterium glutamicum ATCC
13032]
Length = 494
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 373
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 374 EKVLEIQQYAREPISLDQTIGD 395
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 104/171 (60%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E++K VQ + ++ ++ +L + + A+ A A G++ER L+Q L G
Sbjct: 85 LLKADEEVELAKRVQFLVEVDNLQESLSSKLNRRATQAETAAAFGLTERQLEQKLYQGRV 144
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+ F DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 145 AKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 204
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAK 406
IR++I++ +A AR I++P + +++K++KA++ + + + E+A+
Sbjct: 205 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQREIKQKLHRNATENELAQ 255
>gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum]
Length = 497
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 257 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 316
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 317 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 376
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 377 EKVLEIQQYAREPISLDQTIGD 398
>gi|374849564|dbj|BAL52576.1| RNA polymerase primary sigma factor [uncultured prokaryote]
Length = 334
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 91/156 (58%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG L++ + G RE+LI+ LV+ +A+ YR +P DL+Q GN+G++ E
Sbjct: 82 AGEDTPELRELVRKGMEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVE 141
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
R+D GY+FSTY +WIR++I + VA +R I++P ++ I+KI++A + G+
Sbjct: 142 RYDPELGYRFSTYATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRP 201
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ E+A+ G+ +A I A + S+D+ IG+
Sbjct: 202 ATNEELAELLGIDVARIEQARTQIPRTSSLDKPIGE 237
>gi|384441617|ref|YP_005657920.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni M1]
gi|307747900|gb|ADN91170.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni M1]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|283956399|ref|ZP_06373879.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792119|gb|EFC30908.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1336]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 191 AKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 250
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A HAR I++P + I+++ K ++ LT G P E+A ++ ++
Sbjct: 251 IRQSVTRALADHARTIRVPVHMVETINRMSKMQRKLTLELGYEPSTKELATALDMTEEKV 310
Query: 416 RSASECLRIVGSIDQKIGD 434
+ R S++ IG+
Sbjct: 311 LEIMQIAREPASLETPIGE 329
>gi|1553019|gb|AAC45101.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|419693749|ref|ZP_14221733.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9872]
gi|380672370|gb|EIB87543.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9872]
Length = 622
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|307718768|ref|YP_003874300.1| RNA polymerase sigma factor [Spirochaeta thermophila DSM 6192]
gi|306532493|gb|ADN02027.1| RNA polymerase sigma factor [Spirochaeta thermophila DSM 6192]
Length = 580
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++LI++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GYKFSTY +W
Sbjct: 342 AKDKLIQANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWW 401
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ ++ AR I++P + +I+K+Q+ + L G+ P D EIA G L+ +
Sbjct: 402 IRQAITRSISDQARTIRVPVHMIEQINKVQREARQLMQVLGREPTDEEIADRLGWPLSRV 461
Query: 416 RSASECLRIVGSIDQKIGD 434
+S R S++ IG+
Sbjct: 462 KSVKNVAREPISLESPIGE 480
>gi|289578595|ref|YP_003477222.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
italicus Ab9]
gi|289528308|gb|ADD02660.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter italicus Ab9]
Length = 273
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 91/148 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ I+S LV+ +A+ Y G GI F DL+Q GN+G+L+ ERFD+ +GYKFSTY +W
Sbjct: 36 AKKRFIESNLRLVVSIAKGYVGKGISFPDLIQEGNLGLLKAVERFDYRKGYKFSTYATWW 95
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++I++ +A AR I+IP + ++K+ K +K G+ P EIA+ +S +
Sbjct: 96 IKQTITRAIADQARTIRIPVHMVESVNKLLKIQKQFLQKLGREPSIEEIAEEMNISEKKA 155
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNI 443
+ E ++ + S+++ +G+ N K +I
Sbjct: 156 KVLLEIVQGIVSLEEPVGEDENGKLGDI 183
>gi|1553023|gb|AAC45103.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|116491026|ref|YP_810570.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni PSU-1]
gi|290890507|ref|ZP_06553582.1| hypothetical protein AWRIB429_0972 [Oenococcus oeni AWRIB429]
gi|419758826|ref|ZP_14285138.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB304]
gi|419857734|ref|ZP_14380437.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB202]
gi|419859523|ref|ZP_14382177.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185425|ref|ZP_15642836.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB318]
gi|421188904|ref|ZP_15646236.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB419]
gi|421193631|ref|ZP_15650877.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB553]
gi|421195329|ref|ZP_15652537.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB568]
gi|421197442|ref|ZP_15654617.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB576]
gi|116091751|gb|ABJ56905.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni PSU-1]
gi|290479903|gb|EFD88552.1| hypothetical protein AWRIB429_0972 [Oenococcus oeni AWRIB429]
gi|399904281|gb|EJN91737.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB304]
gi|399964237|gb|EJN98891.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB419]
gi|399964606|gb|EJN99247.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB318]
gi|399971790|gb|EJO06029.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB553]
gi|399975051|gb|EJO09119.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB576]
gi|399975754|gb|EJO09789.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB568]
gi|410496540|gb|EKP88023.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|410497205|gb|EKP88680.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB202]
Length = 458
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P EI L+ ++R + + S++ IG+
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGE 358
>gi|419640561|ref|ZP_14172490.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23357]
gi|380619291|gb|EIB38368.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23357]
Length = 622
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|379012265|ref|YP_005270077.1| RNA polymerase sigma factor RpoD [Acetobacterium woodii DSM 1030]
gi|375303054|gb|AFA49188.1| RNA polymerase sigma factor RpoD [Acetobacterium woodii DSM 1030]
Length = 382
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 98/172 (56%), Gaps = 7/172 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGW-YCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L G E L + + G ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 118 KEIGKVPLLT------GDQEMALAKRMEAGDDSAKKELAEANLRLVVSIAKRYVGRGMSF 171
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 172 LDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 231
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K+ + + L +G+ P EI K G S ++R + + S++ IG+
Sbjct: 232 KLIRVSRQLLQEYGREPTPAEIGKEMGFSEEKVREIQKIAQDPVSLETPIGE 283
>gi|386346850|ref|YP_006045099.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
thermophila DSM 6578]
gi|339411817|gb|AEJ61382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
thermophila DSM 6578]
Length = 568
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++LI++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GYKFSTY +W
Sbjct: 330 AKDKLIQANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWW 389
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ ++ AR I++P + +I+K+Q+ + L G+ P D EIA G L+ +
Sbjct: 390 IRQAITRSISDQARTIRVPVHMIEQINKVQREARQLMQVLGREPTDEEIADRLGWPLSRV 449
Query: 416 RSASECLRIVGSIDQKIGD 434
+S R S++ IG+
Sbjct: 450 KSVKNVAREPISLESPIGE 468
>gi|291301996|ref|YP_003513274.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571216|gb|ADD44181.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 559
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 87/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+ + LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 319 GDRAKNHLLAANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 378
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK +S
Sbjct: 379 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPAPEELAKEMDISP 438
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 439 EKVLEIQQYAREPISLDQTIGD 460
>gi|118586868|ref|ZP_01544302.1| DNA-directed RNA polymerase RpoD, sigma subunit, Sigma-42
[Oenococcus oeni ATCC BAA-1163]
gi|71466858|emb|CAH41003.1| rpoD protein [Oenococcus oeni]
gi|118432700|gb|EAV39432.1| DNA-directed RNA polymerase RpoD, sigma subunit, Sigma-42
[Oenococcus oeni ATCC BAA-1163]
Length = 458
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P EI L+ ++R + + S++ IG+
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGE 358
>gi|374850797|dbj|BAL53777.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
gi|374856619|dbj|BAL59472.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
Length = 277
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 80/139 (57%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE LI + LV+ +A YR LG+P DL+Q GN+G++ ERFD RGYKFSTY +W
Sbjct: 47 ARERLITANLRLVVSIAARYRDLGVPLLDLIQEGNIGLITAVERFDPQRGYKFSTYATWW 106
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I + + +H R I +P L + KI + + + HG P +E+A+ G+S +
Sbjct: 107 IRQAILRSLVKHLRVIAVPDYLVSLLHKIAQIEEDYVHQHGTLPNYLEVAEEVGVSPEVL 166
Query: 416 RSASECLRIVGSIDQKIGD 434
+ + S+D IG+
Sbjct: 167 QRLLQVRPFAPSLDTPIGE 185
>gi|94266972|ref|ZP_01290621.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
gi|93452327|gb|EAT02958.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
Length = 353
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 87/140 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ L+++ LV+ +A+ Y G G+ DL+Q GN+G+++ E+F++ RGYKFSTY +W
Sbjct: 115 AKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWW 174
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ +A R I+IP + I+++ K K HG+ P E+A++ G+ +A++
Sbjct: 175 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVAKV 234
Query: 416 RSASECLRIVGSIDQKIGDC 435
+S + + S+D +G+
Sbjct: 235 KSVLKIAKEPLSLDTPVGNS 254
>gi|1553029|gb|AAC45106.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|386385680|ref|ZP_10070942.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
gi|385666870|gb|EIF90351.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
Length = 333
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 94/168 (55%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
+A G L+ A G ++E I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 GEAGGAGREELEALAAAGERAKDEFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
E+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++
Sbjct: 137 AVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREK 196
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
G+ PE EIA+ G + + + R S++ + D ++ ++
Sbjct: 197 GREPEAAEIAQELGSTPERVTDVLDWARDPVSLNMAVDDAGETQFGDL 244
>gi|2764713|emb|CAA05353.1| sigma 70 [Campylobacter jejuni]
Length = 622
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|1553013|gb|AAC45098.1| primary sigma factor, partial [Borrelia afzelii]
gi|1553015|gb|AAC45099.1| primary sigma factor, partial [Borrelia afzelii]
gi|1553021|gb|AAC45102.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 VQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|448823559|ref|YP_007416724.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
gi|448277056|gb|AGE36480.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
Length = 545
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 305 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 364
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+A+ +++
Sbjct: 365 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITV 424
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+ + R S+DQ IGD
Sbjct: 425 DTVLEIQQYAREPISLDQTIGD 446
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LKQ + G +++L+ + LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+
Sbjct: 173 RDLKQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYA 232
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
+GYKFSTY +WIR++I + +A AR I+IP + +I+KI + ++ L ++ G+ P D E
Sbjct: 233 KGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEE 292
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+A + L ++ + S++ +GD
Sbjct: 293 LALELDMPLEQVVELRRYAQDTVSLETGVGD 323
>gi|221636011|ref|YP_002523887.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
gi|221157983|gb|ACM07101.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
Length = 334
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 91/156 (58%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG L++ + G RE+LI+ LV+ +A+ YR +P DL+Q GN+G++ E
Sbjct: 82 AGEDTPELRELVRKGQEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVE 141
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
R+D GY+FSTY +WIR++I + VA +R I++P ++ I+KI++A + G+
Sbjct: 142 RYDPELGYRFSTYATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRP 201
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ E+A+ G+ +A I A + S+D+ IG+
Sbjct: 202 ATNEELAELLGIDVARIEQARTQIPRTSSLDKPIGE 237
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 100/171 (58%), Gaps = 8/171 (4%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+ A +S L Q + G +E +I++ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 162 AWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 221
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ L+
Sbjct: 222 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 281
Query: 394 SHGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCL 436
S G+ +IA+ ++ +I RS S +++ D ++GD L
Sbjct: 282 SKGRTASIEDIAQEMDMTPEQIRELLVRVPRSVSLEIKVGKDKDTELGDLL 332
>gi|47679387|gb|AAT36674.1| DNA-directed RNA polymerase sigma A subunit [Oenococcus oeni PSU-1]
Length = 465
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 197 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 254
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 255 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 314
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P EI L+ ++R + + S++ IG+
Sbjct: 315 LIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLETPIGE 365
>gi|296532040|ref|ZP_06894819.1| DNA-directed RNA polymerase sigma subunit RpoD [Roseomonas
cervicalis ATCC 49957]
gi|296267655|gb|EFH13501.1| DNA-directed RNA polymerase sigma subunit RpoD [Roseomonas
cervicalis ATCC 49957]
Length = 640
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 262 LEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
LE+ SG AA L G ER +++ +EEL ++ LV+ +A+ YR G+
Sbjct: 375 LEQSSGLPAAELRRVCAEVGRGERDMRK-------AKEELTRANLRLVVHIAKRYRNRGL 427
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380
F DL+Q GN+G+++ ++FD RG+KF+TY +W+R++I++ +A AR I++P +
Sbjct: 428 MFGDLIQEGNIGLMRAVDKFDWRRGFKFATYATWWVRQAITRSLADQARTIRVPVHMTET 487
Query: 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ K+ + + G+ P E+A G+S+ ++R+ R S++ IG+
Sbjct: 488 VGKVARMSRRFAQKAGREPTPEELAGELGMSVDKVRAVQRLAREPVSLENPIGE 541
>gi|259507416|ref|ZP_05750316.1| RNA polymerase principal sigma factor SigA, partial
[Corynebacterium efficiens YS-314]
gi|259164981|gb|EEW49535.1| RNA polymerase principal sigma factor SigA [Corynebacterium
efficiens YS-314]
Length = 381
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 1/200 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
++ + E E+S ++ A L E E+ AA + A+ +R L+ G
Sbjct: 84 KVALLNAEQEVSLAKRIEAGLYATHKMEEMEAAYAAG-DKDAKLTPAVKRDLRAIARDGR 142
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY +
Sbjct: 143 KAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATW 202
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S +
Sbjct: 203 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEEK 262
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S+DQ IGD
Sbjct: 263 VLEIQQYAREPISLDQTIGD 282
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 102/169 (60%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA AG+ L++ +A G + +E++IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 175 WAHLAGLEVGELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 234
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ +++ +A +R I++P + +++KI+KA++ ++
Sbjct: 235 RAVEKFDPTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQI 294
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
G+ EIA+ L+ +R + S++ K+G + + +++
Sbjct: 295 RGRTATVEEIAQELALTPEAVREVLMTVPRSVSLEIKVGKEKDTELIDL 343
>gi|94263094|ref|ZP_01286913.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
gi|93456637|gb|EAT06745.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
Length = 540
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 87/140 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ L+++ LV+ +A+ Y G G+ DL+Q GN+G+++ E+F++ RGYKFSTY +W
Sbjct: 302 AKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWW 361
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ +A R I+IP + I+++ K K HG+ P E+A++ G+ +A++
Sbjct: 362 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVAKV 421
Query: 416 RSASECLRIVGSIDQKIGDC 435
+S + + S+D +G+
Sbjct: 422 KSVLKIAKEPLSLDTPVGNS 441
>gi|68171251|ref|ZP_00544654.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70, non-essential region:Sigma-70 region
1.2 [Ehrlichia chaffeensis str. Sapulpa]
gi|88657966|ref|YP_507558.1| RNA polymerase sigma factor RpoD [Ehrlichia chaffeensis str.
Arkansas]
gi|67999333|gb|EAM85979.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70, non-essential region:Sigma-70 region
1.2 [Ehrlichia chaffeensis str. Sapulpa]
gi|88599423|gb|ABD44892.1| RNA polymerase sigma factor RpoD [Ehrlichia chaffeensis str.
Arkansas]
Length = 622
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 92/149 (61%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 375 IQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 434
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +W+R++I++ +A AR I+IP + ++KI + + + + G+ P E++
Sbjct: 435 YKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELS 494
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+++ +IR + ++ S++ IGD
Sbjct: 495 ARLNINVDKIRKVMKIVKDPVSLESPIGD 523
>gi|119953489|ref|YP_945698.1| RNA polymerase sigma factor RpoD [Borrelia turicatae 91E135]
gi|119862260|gb|AAX18028.1| RNA polymerase sigma factor RpoD [Borrelia turicatae 91E135]
Length = 630
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 335 EKSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 380
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 381 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L GK P D E++
Sbjct: 440 FKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLVQVLGKDPTDEELS 499
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G L ++++ R S++ IG+
Sbjct: 500 SRLGWDLKKVKTVKNVSREPVSLETPIGE 528
>gi|268610742|ref|ZP_06144469.1| RNA polymerase sigma factor RpoD [Ruminococcus flavefaciens FD-1]
Length = 360
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 109/195 (55%), Gaps = 8/195 (4%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREE 299
++ EM+ + +A + +K L KE G+ L + L Q +A G Y ++
Sbjct: 74 DDLEMALSTEGIAIDDPVKIYL-KEIGRVPLLTTEEEIE------LAQRMAKGDRYAKKR 126
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++
Sbjct: 127 LSEANLRLVVSIAKKYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQA 186
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
I++ +A AR I+IP + I+K++K L + +G P EIA + + ++R
Sbjct: 187 ITRAIADQARTIRIPVHMVETITKVKKVSSQLLHENGHDPSPEEIADKLNMPVDKVREIM 246
Query: 420 ECLRIVGSIDQKIGD 434
+ S++ IG+
Sbjct: 247 RVAQDPVSLETPIGE 261
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 244 EMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKS 303
E+ + + ++A E++ L++ +L+ WA +SE+ L Q L G + ++I +
Sbjct: 46 EVQQLMTILAESEKLTIELKR----TPTLSEWANQMQLSEQELLQQLNQGKKAKHKMITA 101
Query: 304 TRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKM 363
LV+ +A+ Y+ + DL+Q G +G+ +G E+F+ GY+FSTY +WIR+ I++
Sbjct: 102 NLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPALGYRFSTYAYWWIRQGITRA 161
Query: 364 VARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIR 416
+A+ R I++P +N +++KI++ ++ L+ + G+ P EIA L ++IR
Sbjct: 162 IAQQGRAIRLPIHINEKLNKIKRVQRELSQTLGRIPTSTEIANALSLKPSQIR 214
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 100/171 (58%), Gaps = 8/171 (4%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+ A +S L Q + G +E +I++ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 162 AWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 221
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTN 393
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ L+
Sbjct: 222 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 281
Query: 394 SHGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCL 436
S G+ +IA+ ++ +I RS S +++ D ++GD L
Sbjct: 282 SKGRTASIEDIAQEMDMTPEQIRELLVRVPRSVSLEIKVGKDKDTELGDLL 332
>gi|159039487|ref|YP_001538740.1| RpoD family RNA polymerase sigma factor [Salinispora arenicola
CNS-205]
gi|157918322|gb|ABV99749.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 329
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 92/156 (58%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AGV L++ +A G ++ I++ LV+ +AR Y G+P DL+Q GN G+++ E
Sbjct: 77 AGVERAELQRLVAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVE 136
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+ RG+KFSTY +WIR++IS+ +A+ R +++P L ++++++ + LT G
Sbjct: 137 KFDYERGFKFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNVARQLTRELGSD 196
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
PE +IA G+S+ + + S+D +GD
Sbjct: 197 PEPEQIATALGVSVERVNELVRWSQDTVSLDTPVGD 232
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 112/185 (60%), Gaps = 2/185 (1%)
Query: 260 TTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLG 319
T+L+ E + WA+ A +S L++ L+ G ++++I + LV+ +A+ Y+ G
Sbjct: 114 TSLQLEQVLQSGFQKWAELADLSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRG 173
Query: 320 IPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNR 379
+ DL+Q G +G+ + E+FD+ +GY FSTY +WIR+ +++ +A +R I+IP +
Sbjct: 174 LDLLDLIQEGTLGLEKAVEKFDYRKGYHFSTYSYWWIRQGMTRAIATQSRSIRIPIHITE 233
Query: 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS-ASECLRIVGSIDQKIGDCLNA 438
+++ ++K ++ L+ + G+ P+ E+A+ ++ E+RS S+ R + S++ K+G+ N
Sbjct: 234 KLNLLKKTQRQLSQALGRTPKAEELAEKMEMTTFELRSFLSQIPRSI-SLETKVGEDYNT 292
Query: 439 KYLNI 443
+ + +
Sbjct: 293 ELVEL 297
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 102/175 (58%), Gaps = 12/175 (6%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ A ++ + L+Q A G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 157 WAELAELTSKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 216
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++
Sbjct: 217 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 276
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI----------DQKIGDCLNAK 439
G+ +IA ++ A++R LR+ S+ D ++GD L +
Sbjct: 277 RGRTATIDDIAVELEMTAAQVREV--LLRVPRSVSLEIKVGKERDTELGDLLETE 329
>gi|108804071|ref|YP_644008.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108765314|gb|ABG04196.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 294
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 82/137 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++LI+ LV+ +A+ YRG G+PF DL+Q GN+G+++ E+FD RG++FSTY +W
Sbjct: 56 ARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKFDPERGFRFSTYATWW 115
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++ + VA R I++P + +I K+ + L+ + P D EIA+ + ++
Sbjct: 116 IRQAVQRAVADKGRTIRVPVHMTEKIRKVSRTFNELSLELEREPTDEEIARRLEWDVEDV 175
Query: 416 RSASECLRIVGSIDQKI 432
R + S+DQ +
Sbjct: 176 RLTISAMPDATSLDQPV 192
>gi|254293486|ref|YP_003059509.1| RNA polymerase sigma factor RpoD [Hirschia baltica ATCC 49814]
gi|254042017|gb|ACT58812.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Hirschia baltica
ATCC 49814]
Length = 683
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 89/139 (64%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 445 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 504
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + ++ + + G+ P E+A+ GL L +I
Sbjct: 505 IRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEKLGLPLEKI 564
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ IGD
Sbjct: 565 RKVLKIAKEPISLETPIGD 583
>gi|222053802|ref|YP_002536164.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter daltonii
FRC-32]
gi|221563091|gb|ACM19063.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
daltonii FRC-32]
Length = 586
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 256 ERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
ER +E+ESG KA+ L+ QA E K + EL+++ LV+ +A+
Sbjct: 315 ERKLKKIEQESGFKASELSTALQAIEEGEHKAK-------LAKSELVEANLRLVVSIAKK 367
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP
Sbjct: 368 YTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIP 427
Query: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ I+K+ + + L G+ P EIA+ L L ++R + + S++ IG+
Sbjct: 428 VHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSLPLDKVRKVLKIAKEPISLETPIGE 487
>gi|73666941|ref|YP_302957.1| RNA polymerase sigma factor rpoD [Ehrlichia canis str. Jake]
gi|72394082|gb|AAZ68359.1| RNA polymerase, sigma 70 subunit, RpoD [Ehrlichia canis str. Jake]
Length = 622
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 92/149 (61%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 375 IQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 434
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +W+R++I++ +A AR I+IP + ++KI + + + + G+ P E++
Sbjct: 435 YKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELS 494
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+++ +IR + ++ S++ IGD
Sbjct: 495 AKLNINVDKIRKVMKIVKDPVSLESPIGD 523
>gi|301064644|ref|ZP_07205038.1| RNA polymerase sigma factor RpoD [delta proteobacterium NaphS2]
gi|300441264|gb|EFK05635.1| RNA polymerase sigma factor RpoD [delta proteobacterium NaphS2]
Length = 590
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 100/181 (55%), Gaps = 9/181 (4%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
ERV ++ L + ELI++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++
Sbjct: 339 ERV-ERSLEKASRAKSELIQANLRLVVSIAKKYTNRGLMFLDLIQEGNIGLMKAVDKFEY 397
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
RGYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L HG+ P
Sbjct: 398 QRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLMRTSRYLVQEHGREPTSE 457
Query: 403 EIAKYTGLSLAEIRS----ASECLRIVGSI----DQKIGDCLNAKYLNIPPFFFPSFAIW 454
EIA+ L ++R A E + + I D +GD + K + P +F +
Sbjct: 458 EIAEKMEFPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKNILSPGDAVVNFGLA 517
Query: 455 E 455
E
Sbjct: 518 E 518
>gi|25028360|ref|NP_738414.1| RNA polymerase sigma factor [Corynebacterium efficiens YS-314]
gi|23493645|dbj|BAC18614.1| sigma factor SigA [Corynebacterium efficiens YS-314]
Length = 506
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 266 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 325
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E++K +S
Sbjct: 326 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISE 385
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++ + R S+DQ IGD
Sbjct: 386 EKVLEIQQYAREPISLDQTIGD 407
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 90/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 EKINDLLEHSRDPVSLDMPVG 219
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 1/170 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSER-VLKQHLAFGWYCREEL 300
E ++ VQ + L ++ L+ G+ S WA A G + L+ + CREEL
Sbjct: 23 EVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGALRTRMGHMKACREEL 82
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+ LVL +A+ Y G+ F+DL Q GN G+ + +RFD ++G++FSTY +WIR+++
Sbjct: 83 IQRNLRLVLSVAKRYGDCGLAFTDLCQEGNFGLAKACDRFDPSKGFRFSTYAVWWIRQAV 142
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
+ VA +R I++P ++ ++ +++K + AL G+ D EIA+ L
Sbjct: 143 AHAVAHQSRTIRLPTHVHEKLRRMKKHKVALEKQTGRDATDDEIAREMSL 192
>gi|23978369|dbj|BAC21149.1| principal sigma factor [Pseudanabaena sp. PCC 7403]
Length = 203
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 87/133 (65%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|406830145|ref|ZP_11089739.1| RNA polymerase sigma factor RpoD [Schlesneria paludicola DSM 18645]
Length = 553
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 292 FGWY--CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
FG Y EL LV+ +A+ YR G+ F DL+Q GN G+++ +++++ RGYKFS
Sbjct: 300 FGAYEQAMRELSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFS 359
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR++I++ +A AR I+IP + +SK++K K L G+ P E A+ G
Sbjct: 360 TYATWWIRQAITRAIADQARTIRIPVHMIETMSKLRKVSKRLLQEKGREPTIEETAEAAG 419
Query: 410 LSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
+SL E R + R S+D+ +G+ ++ +
Sbjct: 420 VSLEETRRVLKISRHPISLDRPVGESEDSYF 450
>gi|357055293|ref|ZP_09116365.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
gi|355382932|gb|EHG30022.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
Length = 381
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 88/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ +
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 264 VMEIMQIAREPASLETPIGE 283
>gi|160941160|ref|ZP_02088497.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
gi|158435721|gb|EDP13488.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
Length = 381
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 88/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ +
Sbjct: 204 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDK 263
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 264 VMEIMQIAREPASLETPIGE 283
>gi|145596092|ref|YP_001160389.1| RpoD family RNA polymerase sigma factor [Salinispora tropica
CNB-440]
gi|145305429|gb|ABP56011.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora tropica
CNB-440]
Length = 332
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 93/156 (59%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AGV + L++ +A G ++ I++ LV+ +AR Y G+P DL+Q GN G+++ E
Sbjct: 79 AGVEKAELQRLVAEGARAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVE 138
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+ RG+KFSTY +WIR++IS+ +A+ R +++P L ++++++ + LT G
Sbjct: 139 KFDYERGFKFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNVARQLTRELGSD 198
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
PE +IA G+++ + + S+D +GD
Sbjct: 199 PEPEQIATALGVTVERVNELVRWSQDTVSLDTPVGD 234
>gi|342215570|ref|ZP_08708217.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586460|gb|EGS29860.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 366
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK + L + A + K+ ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 102 KEIGKISLLTADEEVA-----IAKRMENGDELAKQELAEANLRLVVSIAKRYVGRGMSFL 156
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 157 DLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 216
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P EIA+ L + ++R + + S++ IG+
Sbjct: 217 LVRVQRQLVQDLGRDPSPEEIAQEMNLDVEKVREIQKIAQEPVSLETPIGE 267
>gi|309791990|ref|ZP_07686468.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225984|gb|EFO79734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 396
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 108/190 (56%), Gaps = 3/190 (1%)
Query: 257 RIKTTLEKESGKAASLNCWAQAAGVSERV-LKQHLAFGWYCREELIKSTRPLVLFLARNY 315
R+ T+E+ G+ A + +E V L++ + G R+++ + LV+ +A+ Y
Sbjct: 119 RLAQTIER--GQKAQVKIKDLDPTSAEAVELRRQIEKGNDARQQMAAANLRLVVSIAKRY 176
Query: 316 RGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPC 375
R G+P DL+Q G++G+L+ E+FDH +G+KFSTY +WI++++S+ +A +R +++P
Sbjct: 177 RDRGLPLLDLIQEGSLGLLRAIEKFDHDKGFKFSTYATWWIKQALSRALADQSRLVRLPV 236
Query: 376 KLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDC 435
L +++IQ AR+ LT G+ P D E+A +S ++R + S+ +G+
Sbjct: 237 HLGETLNRIQAARRQLTQRLGREPYDSELADELSMSQEKLRELRRTAQDPVSLATPVGEE 296
Query: 436 LNAKYLNIPP 445
++ + P
Sbjct: 297 ADSTLADFIP 306
>gi|23978337|dbj|BAC21138.1| principal sigma factor [Pseudanabaena sp. PCC 7367]
Length = 203
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 87/133 (65%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|261367093|ref|ZP_05979976.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
gi|282571217|gb|EFB76752.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
Length = 364
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY
Sbjct: 124 GEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYA 183
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K++K L + +G P EIA+ +S+
Sbjct: 184 TWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSV 243
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R + S++ IG+
Sbjct: 244 DKVREIMRVAQEPVSLETPIGE 265
>gi|224531865|ref|ZP_03672497.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia valaisiana
VS116]
gi|224511330|gb|EEF81736.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia valaisiana
VS116]
Length = 631
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 487 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 529
>gi|238060708|ref|ZP_04605417.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
gi|237882519|gb|EEP71347.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
Length = 331
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 92/156 (58%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AGV L++ A G ++ I++ LV+ +AR Y G+P DL+Q GN G+++ E
Sbjct: 79 AGVDRDDLERVAAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVE 138
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+ RG+KFSTY +WIR++IS+ +A+ R +++P L ++++++ A + LT G
Sbjct: 139 KFDYERGFKFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNAARQLTRELGSD 198
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
PE +IA G+++ + + S+D +GD
Sbjct: 199 PEPEQIAAALGVTVERVNELVRWSQDTVSLDTPVGD 234
>gi|108804647|ref|YP_644584.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108765890|gb|ABG04772.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 304
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 82/137 (59%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++LI+ LV+ +A+ YRG G+PF DL+Q GN+G+++ E+FD RG++FSTY +W
Sbjct: 67 ARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKFDPERGFRFSTYATWW 126
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++ + VA R I++P + +I K+ + L+ + P D EIA+ + ++
Sbjct: 127 IRQAVQRAVADKGRTIRVPVHMTEKIRKVSRTFNELSLELEREPTDEEIARRLEWDVEDV 186
Query: 416 RSASECLRIVGSIDQKI 432
R + S+DQ +
Sbjct: 187 RLTISAMPDATSLDQPV 203
>gi|449131100|ref|ZP_21767317.1| RNA polymerase sigma factor RpoD [Treponema denticola SP37]
gi|448940446|gb|EMB21352.1| RNA polymerase sigma factor RpoD [Treponema denticola SP37]
Length = 619
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASLNCWAQAAGVSERV-L 286
L G+RL I R ++ K + + AN ++ I T ++ + K + + A V E + L
Sbjct: 309 LRKLGKRLAIPREREKLEKELNISANEVKDIYTQIQVLTRKIRKIE-YDFEATVDEVIDL 367
Query: 287 KQHLAFGWY----CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
+ G +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 368 TSEIKSGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEY 427
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D
Sbjct: 428 RKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDD 487
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA G S+ +++ R S++ IG+
Sbjct: 488 EIALQLGWSIEKVKQVKNVAREPISLETPIGE 519
>gi|312898762|ref|ZP_07758151.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
gi|310620193|gb|EFQ03764.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
Length = 437
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 94/156 (60%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG +E + ++ G +++L + LV+ +A+ Y G G+ F DL+Q GN+G+L+ E
Sbjct: 184 AGSAEGATPEEVSAGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVE 243
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+++GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 244 KFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 303
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P EIA+ G+ + +R + + S++ IG+
Sbjct: 304 PLPEEIAEKMGVPVERVREIMKIAQEPVSLETPIGE 339
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG------- 280
L GR + R+E +++ VQ L ++ L+KE G+ +L W A
Sbjct: 52 LQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQ 111
Query: 281 VSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
++ L+Q G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+F
Sbjct: 112 LTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKF 171
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPE 400
D +GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ L+ G+ P
Sbjct: 172 DPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPT 231
Query: 401 DIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLN 437
+IA ++ ++ RS S ++ D ++GD L
Sbjct: 232 IEDIASELEMTPPQVRELLVRVPRSVSLETKVGKDKDTELGDLLE 276
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 90/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 EKINDLLEHSRDPVSLDMPVG 219
>gi|350566296|ref|ZP_08934981.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
gi|348662922|gb|EGY79550.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
Length = 370
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 100/172 (58%), Gaps = 7/172 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGW-YCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L G E ++ + + G ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 106 KEIGKIPLLT------GEEEVLIAKRMEIGENLAKKELAEANLRLVVSIAKRYVGRGMSF 159
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 160 LDLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 219
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K+ + ++ L G+ P EIA+ L + ++R + + S++ IG+
Sbjct: 220 KLVRVQRQLVQELGRDPSPEEIAQEMSLDVEKVREIQKIAQEPVSLETPIGE 271
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 90/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A+ +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 EKINDLLEHSRDPVSLDMPVG 219
>gi|23978335|dbj|BAC21137.1| principal sigma factor [Phormidium sp. IAM M-99]
Length = 203
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 87/133 (65%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSNFRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|449107207|ref|ZP_21743864.1| RNA polymerase sigma factor RpoD [Treponema denticola ASLM]
gi|449109569|ref|ZP_21746203.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33520]
gi|449115694|ref|ZP_21752154.1| RNA polymerase sigma factor RpoD [Treponema denticola H-22]
gi|449120247|ref|ZP_21756633.1| RNA polymerase sigma factor RpoD [Treponema denticola H1-T]
gi|449122652|ref|ZP_21758985.1| RNA polymerase sigma factor RpoD [Treponema denticola MYR-T]
gi|451968903|ref|ZP_21922132.1| RNA polymerase sigma factor RpoD [Treponema denticola US-Trep]
gi|448947642|gb|EMB28486.1| RNA polymerase sigma factor RpoD [Treponema denticola MYR-T]
gi|448948391|gb|EMB29228.1| RNA polymerase sigma factor RpoD [Treponema denticola H1-T]
gi|448955180|gb|EMB35947.1| RNA polymerase sigma factor RpoD [Treponema denticola H-22]
gi|448958812|gb|EMB39540.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33520]
gi|448963008|gb|EMB43693.1| RNA polymerase sigma factor RpoD [Treponema denticola ASLM]
gi|451702356|gb|EMD56778.1| RNA polymerase sigma factor RpoD [Treponema denticola US-Trep]
Length = 619
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASLNCWAQAAGVSERV-L 286
L G+RL I R ++ K + + AN ++ I T ++ + K + + A V E + L
Sbjct: 309 LRKLGKRLAIPREREKLEKELNISANEVKDIYTQIQVLTRKIRKIE-YDFEATVDEVIDL 367
Query: 287 KQHLAFGWY----CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
+ G +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 368 TSEIKNGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEY 427
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D
Sbjct: 428 RKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDD 487
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA G S+ +++ R S++ IG+
Sbjct: 488 EIALQLGWSIEKVKQVKNVAREPISLETPIGE 519
>gi|449102794|ref|ZP_21739541.1| RNA polymerase sigma factor RpoD [Treponema denticola AL-2]
gi|448965596|gb|EMB46257.1| RNA polymerase sigma factor RpoD [Treponema denticola AL-2]
Length = 619
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASLNCWAQAAGVSERV-L 286
L G+RL I R ++ K + + AN ++ I T ++ + K + + A V E + L
Sbjct: 309 LRKLGKRLAIPREREKLEKELNISANEVKDIYTQIQVLTRKIRKIE-YDFEATVDEVIDL 367
Query: 287 KQHLAFGWY----CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
+ G +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 368 TSEIKNGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEY 427
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D
Sbjct: 428 RKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDD 487
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA G S+ +++ R S++ IG+
Sbjct: 488 EIALQLGWSIEKVKQVKNVAREPISLETPIGE 519
>gi|422341839|ref|ZP_16422779.1| RNA polymerase sigma-70 factor family protein [Treponema denticola
F0402]
gi|325473907|gb|EGC77095.1| RNA polymerase sigma-70 factor family protein [Treponema denticola
F0402]
Length = 619
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASLNCWAQAAGVSERV-L 286
L G+RL I R ++ K + + AN ++ I T ++ + K + + A V E + L
Sbjct: 309 LRKLGKRLAIPREREKLEKELNISANEVKDIYTQIQVLTRKIRKIE-YDFEATVDEVIDL 367
Query: 287 KQHLAFGWY----CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
+ G +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 368 TSEIKNGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEY 427
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D
Sbjct: 428 RKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDD 487
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA G S+ +++ R S++ IG+
Sbjct: 488 EIALQLGWSIEKVKQVKNVAREPISLETPIGE 519
>gi|307721137|ref|YP_003892277.1| RNA polymerase sigma-70 subunit RpoD [Sulfurimonas autotrophica DSM
16294]
gi|306979230|gb|ADN09265.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfurimonas autotrophica
DSM 16294]
Length = 615
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 85/134 (63%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 380 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 439
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + +GK P+ IAK GLS+ ++++
Sbjct: 440 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQENGKEPDVDTIAKEVGLSVEKVKNVI 499
Query: 420 ECLRIVGSIDQKIG 433
+ + S++ IG
Sbjct: 500 KITKEPISLEAPIG 513
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ A ++ + L+Q A G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 156 WAELAELTVKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 215
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++
Sbjct: 216 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 275
Query: 395 HGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLNAK 439
G+ +IAK + ++ RS S +++ D ++GD L +
Sbjct: 276 QGRTATIEDIAKELEMDAPQVREVLMRVPRSVSLEIKVGKEKDTELGDLLETE 328
>gi|115523078|ref|YP_779989.1| RNA polymerase sigma factor RpoD [Rhodopseudomonas palustris
BisA53]
gi|115517025|gb|ABJ05009.1| RNA polymerase, sigma 70 subunit, RpoD [Rhodopseudomonas palustris
BisA53]
Length = 704
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 466 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 525
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 526 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 585
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 586 RKVLKIAKEPLSLETPVGD 604
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 101/169 (59%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 175 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 234
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ +++ +A +R I++P + +++KI+KA++ ++
Sbjct: 235 RAVEKFDPTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQM 294
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
G+ EIA+ L+ +R + S++ K+G + + L++
Sbjct: 295 RGRTATVEEIAQELALTPEAVREVLMTVPRSVSLEIKVGKEKDTELLDL 343
>gi|408419807|ref|YP_006761221.1| RNA polymerase sigma70 factor RpoD [Desulfobacula toluolica Tol2]
gi|405107020|emb|CCK80517.1| RpoD: RNA polymerase sigma70 factor [Desulfobacula toluolica Tol2]
Length = 635
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ + EL+++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 396 FSKRELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 455
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR++I++ +A AR I+IP + I+K+ + + L GK P EIA+ + + +
Sbjct: 456 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEMGKEPSPEEIAEKMEIPIEK 515
Query: 415 IRS----ASECLRIVGSI----DQKIGDCLNAKYLNIPPFFFPSFAIWE 455
+R A E + + I D +GD + K +IP F++ E
Sbjct: 516 VRRVLKIAKEPISLETPIGEEEDSHLGDFIEDKKFSIPSDAAIDFSLAE 564
>gi|421186327|ref|ZP_15643720.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB418]
gi|399967280|gb|EJO01762.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB418]
Length = 458
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 307
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + ++ L G+ P E+ L+ ++R + + S++ IG+
Sbjct: 308 LIRIQRTLIQDLGRDPMPEEVGAEMELTADKVREIQKIAQEPVSLETPIGE 358
>gi|154249128|ref|YP_001409953.1| RpoD family RNA polymerase sigma factor [Fervidobacterium nodosum
Rt17-B1]
gi|154153064|gb|ABS60296.1| RNA polymerase, sigma 70 subunit, RpoD family [Fervidobacterium
nodosum Rt17-B1]
Length = 372
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 98/171 (57%), Gaps = 9/171 (5%)
Query: 283 ERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E+ L Q G +EELI S LV+ +A+ Y G G+ F DL+Q G++G+++ E+FD
Sbjct: 116 EKRLAQRAQMGDQRAKEELIISNLRLVVSMAKRYLGKGLSFLDLIQEGSLGLIKAVEKFD 175
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
++GYKFSTY +WIR++I++ +A AR I++P + I+KIQK ++ HG+ P
Sbjct: 176 WSKGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKIQKIKREYVQEHGEEPSI 235
Query: 402 IEIAKYTGLSLAEI----RSASECLRIVGSI----DQKIGDCLNAKYLNIP 444
IA+ G + +I ++A E L + + D +GD + + + P
Sbjct: 236 EYIAEQVGKPVDKIEEILQAAPETLSLETPVNEEDDSSMGDFIADESIGSP 286
>gi|257458803|ref|ZP_05623926.1| RNA polymerase sigma factor RpoD [Campylobacter gracilis RM3268]
gi|257443791|gb|EEV18911.1| RNA polymerase sigma factor RpoD [Campylobacter gracilis RM3268]
Length = 626
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 87/141 (61%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 391 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 450
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IA+ GLS+ +++
Sbjct: 451 ISRAIADQARTIRIPIHMIETINRINKITRKYMQEGGKEPDINVIAQEVGLSVDKVKQVI 510
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 511 KITKEPISLEAPIGNEDDGKF 531
>gi|253827499|ref|ZP_04870384.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313141707|ref|ZP_07803900.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|253510905|gb|EES89564.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313130738|gb|EFR48355.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
Length = 616
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 90/145 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +W
Sbjct: 377 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 436
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + GK P+ +IA+ GL + ++
Sbjct: 437 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIDKIAEEVGLPVDKV 496
Query: 416 RSASECLRIVGSIDQKIGDCLNAKY 440
++ + + S++ IG+ + K+
Sbjct: 497 KNVIKITKEPISLEAPIGNGEDGKF 521
>gi|153952229|ref|YP_001397920.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939675|gb|ABS44416.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
doylei 269.97]
Length = 622
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 86/141 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P IAK GLS+ +++
Sbjct: 445 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPNVSVIAKEVGLSIDKVKQVI 504
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + K+
Sbjct: 505 KITKEPISLEAPIGNEDDGKF 525
>gi|23978360|dbj|BAC21145.1| principal sigma factor [Pleurocapsa sp. PCC 7314]
Length = 203
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 84/127 (66%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A
Sbjct: 7 LVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIAD 66
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
+R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++ ++
Sbjct: 67 QSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAKSAQLPI 126
Query: 427 SIDQKIG 433
S++ IG
Sbjct: 127 SLETPIG 133
>gi|23978365|dbj|BAC21147.1| principal sigma factor [Leptolyngbya sp. PCC 7375]
Length = 203
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 87/133 (65%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 95/162 (58%), Gaps = 8/162 (4%)
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 150 VGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTY 209
Query: 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS 411
+WIR++I++ +A +R I+IP + I+K+ + ++ L G+ P EI + GL+
Sbjct: 210 ATWWIRQAITRAIADQSRTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIGEKMGLT 269
Query: 412 LAEIRS----ASECLRIVGSI----DQKIGDCLNAKYLNIPP 445
+R + E + + I D ++GD + +PP
Sbjct: 270 AERVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDAAIVPP 311
>gi|365901590|ref|ZP_09439424.1| sigma D (sigma 70) factor of RNA polymerase (fragment)
[Bradyrhizobium sp. STM 3843]
gi|365417664|emb|CCE11966.1| sigma D (sigma 70) factor of RNA polymerase (fragment)
[Bradyrhizobium sp. STM 3843]
Length = 430
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 192 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 251
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 252 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 311
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 312 RKVLKIAKEPLSLETPVGD 330
>gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397283|gb|AAS05143.1| SigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 332
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 92 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 152 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPI 211
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 212 DKINDLLEHSRDPVSLDMPVG 232
>gi|449128429|ref|ZP_21764675.1| RNA polymerase sigma factor RpoD [Treponema denticola SP33]
gi|448940837|gb|EMB21741.1| RNA polymerase sigma factor RpoD [Treponema denticola SP33]
Length = 619
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASLNCWAQAAGVSERV-L 286
L G+RL I R ++ K + + AN ++ I T ++ + K + + A V E + L
Sbjct: 309 LRKLGKRLAIPREREKLEKELHISANEVKDIYTQIQVLTRKIRKVE-YDFEATVDEVIDL 367
Query: 287 KQHLAFGWY----CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
+ G +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 368 TSEIKNGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEY 427
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D
Sbjct: 428 RKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDD 487
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA G S+ +++ R S++ IG+
Sbjct: 488 EIALQLGWSIEKVKQVKNVAREPISLETPIGE 519
>gi|373494815|ref|ZP_09585412.1| RNA polymerase sigma factor rpoD [Eubacterium infirmum F0142]
gi|371967177|gb|EHO84649.1| RNA polymerase sigma factor rpoD [Eubacterium infirmum F0142]
Length = 396
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK L + + K+ A Y + +L ++ LV+ +A+ Y G G+ F
Sbjct: 132 KEIGKVPLLTADEEI-----ELAKRMEAGDEYAKMKLCEANLRLVVSIAKRYVGRGMLFL 186
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++ ++FD+ +GYKFSTY +WIR++I++ +A AR I+IP + I+K
Sbjct: 187 DLIQEGNLGLIKAVDKFDYRKGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINK 246
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ + + L ++G+ P EIAK G+++ ++R + + S++ IG+
Sbjct: 247 LIRVSRQLLQTYGREPSPEEIAKEMGITVDKVREIQKIAQEPVSLETPIGE 297
>gi|383790693|ref|YP_005475267.1| sigma-70 family RNA polymerase sigma factor [Spirochaeta africana
DSM 8902]
gi|383107227|gb|AFG37560.1| RNA polymerase sigma factor, sigma-70 family [Spirochaeta africana
DSM 8902]
Length = 590
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 87/139 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ +GYKFSTY +W
Sbjct: 352 AKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWW 411
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ ++ AR I++P + +I+K+ + + L G+ P D EIA G S++ +
Sbjct: 412 IRQAITRSISDQARTIRVPVHMIEQINKVVRESRQLMQMLGREPNDEEIADRLGWSVSRV 471
Query: 416 RSASECLRIVGSIDQKIGD 434
+S R S++ IG+
Sbjct: 472 KSVKNVAREPISLETPIGE 490
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 219 QPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQ 277
+PT + + L GR L A E E+S ERI+ E E L Q
Sbjct: 44 EPTPDAVQHYLQEIGRVSLLTANEEVELS---------ERIERGDEAEE----RLATEDQ 90
Query: 278 AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
+G R L+ + G R LI++ LV+ +A+ Y G G+ DL+Q GN+G+++
Sbjct: 91 LSGTQRRNLEHEVERGNDARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAV 150
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FDH +G +FSTY +WIR+++++ +A R I++P ++ +S++++ + L+ S +
Sbjct: 151 EKFDHRKGNRFSTYATWWIRQAVTRSIAEQGRTIRLPVHMSESVSQVKRTSERLSQSLER 210
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P EIA G I E R S++ +GD
Sbjct: 211 QPSAEEIAIALGQPTERIERVLEAARRPVSLETPVGD 247
>gi|86751238|ref|YP_487734.1| RNA polymerase sigma factor RpoD [Rhodopseudomonas palustris HaA2]
gi|86574266|gb|ABD08823.1| sigma 70 (RpoD) [Rhodopseudomonas palustris HaA2]
Length = 714
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 476 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 535
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 536 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 595
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 596 RKVLKIAKEPLSLETPVGD 614
>gi|42526854|ref|NP_971952.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 35405]
gi|449112083|ref|ZP_21748638.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33521]
gi|449113113|ref|ZP_21749628.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 35404]
gi|449126086|ref|ZP_21762380.1| RNA polymerase sigma factor RpoD [Treponema denticola OTK]
gi|41817169|gb|AAS11863.1| RNA polymerase sigma-70 factor family protein [Treponema denticola
ATCC 35405]
gi|448938800|gb|EMB19727.1| RNA polymerase sigma factor RpoD [Treponema denticola OTK]
gi|448956364|gb|EMB37125.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33521]
gi|448960693|gb|EMB41402.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 35404]
Length = 619
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query: 229 LNSRGRRLTIARNEAEMSKGVQVVAN-LERIKTTLEKESGKAASLNCWAQAAGVSERV-L 286
L G+RL I R ++ K + + AN ++ I T ++ + K + + A V E + L
Sbjct: 309 LRKLGKRLAIPREREKLEKELNISANEVKDIYTQIQVLTRKIRKIE-YDFEATVDEVIDL 367
Query: 287 KQHLAFGWY----CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
+ G +++LI + LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++
Sbjct: 368 TSEIKNGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEY 427
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
+GYKFSTY +WIR++I++ ++ AR I++P + +I+K+ + + L G+ P D
Sbjct: 428 RKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDD 487
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA G S+ +++ R S++ IG+
Sbjct: 488 EIALQLGWSIEKVKQVKNVAREPISLETPIGE 519
>gi|358461550|ref|ZP_09171710.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357073123|gb|EHI82638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 416
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ +AR Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 176 GEVAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 235
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIAK L+
Sbjct: 236 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIAKEMDLTP 295
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R + + S++ IG+
Sbjct: 296 DKVREIQKVAQEPISLETPIGE 317
>gi|386284675|ref|ZP_10061894.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. AR]
gi|385344078|gb|EIF50795.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. AR]
Length = 617
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 93/155 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
++Q A + + KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G
Sbjct: 368 IRQGKAKSEVAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKG 427
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++IS+ +A AR I+IP + I++I K + GK P+ IA
Sbjct: 428 YKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKHLQETGKEPDLDTIA 487
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
+ GLS+ ++++ + + S++ +GD + ++
Sbjct: 488 EEVGLSVDKVKNVIKITKEPVSLETPVGDEDDGRF 522
>gi|316935466|ref|YP_004110448.1| RpoD subfamily RNA polymerase sigma 70 subunit [Rhodopseudomonas
palustris DX-1]
gi|315603180|gb|ADU45715.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopseudomonas
palustris DX-1]
Length = 698
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 460 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 519
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 520 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 579
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 580 RKVLKIAKEPLSLETPVGD 598
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 91/148 (61%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G
Sbjct: 77 LKAVVRDGVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKG 136
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ +A +R I++P L +++KI + ++ L G+ D E+A
Sbjct: 137 FKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDEELA 196
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIG 433
GL++ ++ + R S+D +G
Sbjct: 197 NEAGLTVEKVADLLDHSRDPVSLDMPVG 224
>gi|57239060|ref|YP_180196.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Welgevonden]
gi|58579003|ref|YP_197215.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Welgevonden]
gi|58617062|ref|YP_196261.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Gardel]
gi|57161139|emb|CAH58052.1| RNA polymerase sigma-70 factor [Ehrlichia ruminantium str.
Welgevonden]
gi|58416674|emb|CAI27787.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Gardel]
gi|58417629|emb|CAI26833.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Welgevonden]
Length = 622
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 92/149 (61%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 375 IQKHERAATQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 434
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +W+R++I++ +A AR I+IP + ++KI + + + + G+ P E++
Sbjct: 435 YKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELS 494
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+++ +IR + ++ S++ IGD
Sbjct: 495 ARLNINVDKIRKVMKIVKDPVSLESPIGD 523
>gi|365883901|ref|ZP_09423001.1| sigma D (sigma 70) factor of RNA polymerase [Bradyrhizobium sp. ORS
375]
gi|365287588|emb|CCD95532.1| sigma D (sigma 70) factor of RNA polymerase [Bradyrhizobium sp. ORS
375]
Length = 702
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 464 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 523
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 524 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 583
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 584 RKVLKIAKEPLSLETPVGD 602
>gi|313144578|ref|ZP_07806771.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi CCUG 18818]
gi|386761163|ref|YP_006234798.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi PAGU611]
gi|313129609|gb|EFR47226.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi CCUG 18818]
gi|385146179|dbj|BAM11687.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi PAGU611]
gi|396078278|dbj|BAM31654.1| RNA polymerase sigma factor [Helicobacter cinaedi ATCC BAA-847]
Length = 623
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G+KFSTY +W
Sbjct: 384 AKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWW 443
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE-IAKYTGLSLAE 414
IR++IS+ +A AR I+IP + I++I K + GK P DIE IAK GL + +
Sbjct: 444 IRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHIQETGKEP-DIEYIAKEVGLPIDK 502
Query: 415 IRSASECLRIVGSIDQKIGDCLNAKY 440
+++ + + S+D IG + K+
Sbjct: 503 VKNVIKITKEPVSLDAPIGSDDDGKF 528
>gi|389844090|ref|YP_006346170.1| sigma-70 family RNA polymerase sigma factor [Mesotoga prima
MesG1.Ag.4.2]
gi|387858836|gb|AFK06927.1| RNA polymerase sigma factor, sigma-70 family [Mesotoga prima
MesG1.Ag.4.2]
Length = 416
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+EELI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +GYKFSTY +W
Sbjct: 171 AKEELITANLRLVVSIAKRYIGRGLTFLDLIQEGNIGLIKAVEKFDWKKGYKFSTYATWW 230
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLS---L 412
IR++I++ +A AR I++P + I+K+ K + HG+YP E+ TG + +
Sbjct: 231 IRQAITRAIADQARTIRVPVHMVETINKLNKVIREHLQDHGEYPTIEELGNLTGKTPEKI 290
Query: 413 AEIRSASECL-----RIVGSIDQKIGDCLNAKYLNIP 444
EI +AS+ I G + +GD ++ + P
Sbjct: 291 EEILAASKETVSLESPISGDEESTMGDFIHDDSMEQP 327
>gi|312195623|ref|YP_004015684.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226959|gb|ADP79814.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 418
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ +AR Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 178 GEIAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 237
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P EIAK L+
Sbjct: 238 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIAKEMDLTP 297
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
++R + + S++ IG+
Sbjct: 298 DKVREIQKVAQEPISLETPIGE 319
>gi|75676624|ref|YP_319045.1| RNA polymerase sigma factor RpoD [Nitrobacter winogradskyi Nb-255]
gi|74421494|gb|ABA05693.1| RNA polymerase, sigma 70 subunit, RpoD [Nitrobacter winogradskyi
Nb-255]
Length = 717
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 479 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 538
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 539 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 598
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 599 RKVLKIAKEPLSLETPVGD 617
>gi|419588807|ref|ZP_14124624.1| RNA polymerase sigma factor RpoD [Campylobacter coli 317/04]
gi|380569296|gb|EIA91742.1| RNA polymerase sigma factor RpoD [Campylobacter coli 317/04]
Length = 621
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 86/141 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + K+
Sbjct: 504 KITKEPISLEAPIGSEDDGKF 524
>gi|419541375|ref|ZP_14080584.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z163]
gi|419616105|ref|ZP_14149757.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z156]
gi|380514629|gb|EIA40845.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z163]
gi|380596129|gb|EIB16834.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z156]
Length = 621
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 86/141 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + K+
Sbjct: 504 KITKEPISLEAPIGSEDDGKF 524
>gi|375092093|ref|ZP_09738378.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
gi|374561859|gb|EHR33196.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
Length = 675
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 92/151 (60%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
+ LK+ G + +L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 424 KYLKKKYRIGKAAKGKLAETNLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVEKFDYK 483
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIE 403
RG+KFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P + E
Sbjct: 484 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELGRTPTNEE 543
Query: 404 IAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
IAK + + ++R + + S++ IG+
Sbjct: 544 IAKEMNIDVDKVREVRKIAQEPVSLEAPIGE 574
>gi|91978433|ref|YP_571092.1| RNA polymerase sigma factor RpoD [Rhodopseudomonas palustris BisB5]
gi|91684889|gb|ABE41191.1| RNA polymerase sigma factor RpoD-like [Rhodopseudomonas palustris
BisB5]
Length = 711
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 473 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 532
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 533 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 592
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 593 RKVLKIAKEPLSLETPVGD 611
>gi|57168867|ref|ZP_00367997.1| RNA polymerase sigma factor RpoD [Campylobacter coli RM2228]
gi|305431982|ref|ZP_07401149.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter coli
JV20]
gi|419537076|ref|ZP_14076543.1| RNA polymerase sigma factor RpoD [Campylobacter coli 111-3]
gi|419539401|ref|ZP_14078733.1| RNA polymerase sigma factor RpoD [Campylobacter coli 90-3]
gi|419545010|ref|ZP_14083943.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2553]
gi|419545892|ref|ZP_14084658.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2680]
gi|419548700|ref|ZP_14087317.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2685]
gi|419550357|ref|ZP_14088865.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2688]
gi|419557112|ref|ZP_14095070.1| RNA polymerase sigma factor RpoD [Campylobacter coli 84-2]
gi|419557285|ref|ZP_14095200.1| RNA polymerase sigma factor RpoD [Campylobacter coli 80352]
gi|419563273|ref|ZP_14100733.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1091]
gi|419563852|ref|ZP_14101244.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1098]
gi|419567157|ref|ZP_14104388.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1148]
gi|419567543|ref|ZP_14104699.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1417]
gi|419574681|ref|ZP_14111384.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1909]
gi|419577684|ref|ZP_14114233.1| RNA polymerase sigma factor RpoD [Campylobacter coli 59-2]
gi|419579807|ref|ZP_14116202.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1948]
gi|419582147|ref|ZP_14118405.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1957]
gi|419583178|ref|ZP_14119365.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1961]
gi|419585571|ref|ZP_14121622.1| RNA polymerase sigma factor RpoD [Campylobacter coli 202/04]
gi|419590501|ref|ZP_14125869.1| RNA polymerase sigma factor RpoD [Campylobacter coli 37/05]
gi|419593902|ref|ZP_14129103.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9854]
gi|419595380|ref|ZP_14130484.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23336]
gi|419597802|ref|ZP_14132750.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23341]
gi|419599581|ref|ZP_14134430.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23342]
gi|419600564|ref|ZP_14135319.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23344]
gi|419602856|ref|ZP_14137424.1| RNA polymerase sigma factor RpoD [Campylobacter coli 151-9]
gi|419603907|ref|ZP_14138384.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9853]
gi|419607501|ref|ZP_14141803.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9860]
gi|419610915|ref|ZP_14144967.1| RNA polymerase sigma factor RpoD [Campylobacter coli H8]
gi|419613259|ref|ZP_14147109.1| RNA polymerase sigma factor RpoD [Campylobacter coli H9]
gi|419614874|ref|ZP_14148642.1| RNA polymerase sigma factor RpoD [Campylobacter coli H56]
gi|57019703|gb|EAL56389.1| RNA polymerase sigma factor RpoD [Campylobacter coli RM2228]
gi|304445066|gb|EFM37712.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter coli
JV20]
gi|380515141|gb|EIA41323.1| RNA polymerase sigma factor RpoD [Campylobacter coli 90-3]
gi|380516297|gb|EIA42432.1| RNA polymerase sigma factor RpoD [Campylobacter coli 111-3]
gi|380523553|gb|EIA49199.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2680]
gi|380524182|gb|EIA49804.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2553]
gi|380527143|gb|EIA52552.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2685]
gi|380530773|gb|EIA55829.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2688]
gi|380533916|gb|EIA58778.1| RNA polymerase sigma factor RpoD [Campylobacter coli 84-2]
gi|380538614|gb|EIA63064.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1091]
gi|380542748|gb|EIA66976.1| RNA polymerase sigma factor RpoD [Campylobacter coli 80352]
gi|380543362|gb|EIA67561.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1098]
gi|380544399|gb|EIA68436.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1148]
gi|380547999|gb|EIA71912.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1417]
gi|380554828|gb|EIA78277.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1909]
gi|380556098|gb|EIA79364.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1948]
gi|380556309|gb|EIA79566.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1957]
gi|380556802|gb|EIA80036.1| RNA polymerase sigma factor RpoD [Campylobacter coli 59-2]
gi|380561906|gb|EIA84807.1| RNA polymerase sigma factor RpoD [Campylobacter coli 202/04]
gi|380563829|gb|EIA86656.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1961]
gi|380568481|gb|EIA90949.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9854]
gi|380570783|gb|EIA93198.1| RNA polymerase sigma factor RpoD [Campylobacter coli 37/05]
gi|380572494|gb|EIA94740.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23341]
gi|380573744|gb|EIA95877.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23336]
gi|380573841|gb|EIA95968.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23342]
gi|380580206|gb|EIB01972.1| RNA polymerase sigma factor RpoD [Campylobacter coli 151-9]
gi|380581438|gb|EIB03163.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9853]
gi|380582879|gb|EIB04479.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23344]
gi|380584221|gb|EIB05687.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9860]
gi|380588338|gb|EIB09472.1| RNA polymerase sigma factor RpoD [Campylobacter coli H9]
gi|380589184|gb|EIB10259.1| RNA polymerase sigma factor RpoD [Campylobacter coli H8]
gi|380592180|gb|EIB13097.1| RNA polymerase sigma factor RpoD [Campylobacter coli H56]
Length = 621
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 86/141 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + K+
Sbjct: 504 KITKEPISLEAPIGSEDDGKF 524
>gi|242310656|ref|ZP_04809811.1| RNA polymerase sigma factor [Helicobacter pullorum MIT 98-5489]
gi|239523054|gb|EEQ62920.1| RNA polymerase sigma factor [Helicobacter pullorum MIT 98-5489]
Length = 615
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 90/145 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +W
Sbjct: 376 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWW 435
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + GK P+ +IA+ GL + ++
Sbjct: 436 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIEKIAEEVGLPVDKV 495
Query: 416 RSASECLRIVGSIDQKIGDCLNAKY 440
++ + + S++ IG+ + K+
Sbjct: 496 KNVIKITKEPISLEAPIGNGEDGKF 520
>gi|419560742|ref|ZP_14098378.1| RNA polymerase sigma factor RpoD [Campylobacter coli 86119]
gi|380536660|gb|EIA61270.1| RNA polymerase sigma factor RpoD [Campylobacter coli 86119]
Length = 621
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 86/141 (60%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 444 ISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVI 503
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG + K+
Sbjct: 504 KITKEPISLEAPIGSEDDGKF 524
>gi|365888347|ref|ZP_09427121.1| sigma D (sigma 70) factor of RNA polymerase [Bradyrhizobium sp. STM
3809]
gi|365335991|emb|CCD99652.1| sigma D (sigma 70) factor of RNA polymerase [Bradyrhizobium sp. STM
3809]
Length = 703
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 465 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 524
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 525 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 584
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 585 RKVLKIAKEPLSLETPVGD 603
>gi|39934363|ref|NP_946639.1| RNA polymerase sigma factor RpoD [Rhodopseudomonas palustris
CGA009]
gi|39648212|emb|CAE26731.1| RNA polymerase sigma 70 subunit, RpoD [Rhodopseudomonas palustris
CGA009]
Length = 698
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 460 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 519
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 520 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 579
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 580 RKVLKIAKEPLSLETPVGD 598
>gi|417749572|ref|ZP_12397964.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 319
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPI 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 DKINDLLEHSRDPVSLDMPVG 219
>gi|90422490|ref|YP_530860.1| RNA polymerase sigma factor RpoD [Rhodopseudomonas palustris
BisB18]
gi|90104504|gb|ABD86541.1| sigma 70 (RpoD) [Rhodopseudomonas palustris BisB18]
Length = 702
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 464 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 523
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 524 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 583
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 584 RKVLKIAKEPLSLETPVGD 602
>gi|406996156|gb|EKE14619.1| hypothetical protein ACD_12C00386G0002, partial [uncultured
bacterium]
Length = 377
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE LIKS LV+ +A+ Y G + F DL+Q GN G+++G E++D RGYKFSTY +W
Sbjct: 140 ARERLIKSNLRLVVSIAKKYLGRRLSFLDLIQEGNQGLIKGVEKYDWRRGYKFSTYATWW 199
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A +R I+IP + I++ K ++ LT G P + EIAK +++ E+
Sbjct: 200 IRQAITRAIADQSRTIRIPVHMVDHINRYYKIQRRLTQKFGHEPSNKEIAKELNITIKEV 259
Query: 416 RSASECLRIVGSIDQKIGD 434
+ + + S+ IGD
Sbjct: 260 ENLIKISQHPKSLSTPIGD 278
>gi|152993293|ref|YP_001359014.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. NBC37-1]
gi|151425154|dbj|BAF72657.1| RNA polymerase sigma 70 factor [Sulfurovum sp. NBC37-1]
Length = 612
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 93/155 (60%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
++Q A + + KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G
Sbjct: 363 IRQGKAKSEVAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKG 422
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++IS+ +A AR I+IP + I++I K + GK P+ IA
Sbjct: 423 YKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKHLQETGKEPDLETIA 482
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
K GL++ ++++ + + S++ +GD + ++
Sbjct: 483 KEVGLTVDKVKNVIKITKEPVSLETPVGDEDDGRF 517
>gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [Mycobacterium avium 104]
gi|254776043|ref|ZP_05217559.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp. avium
ATCC 25291]
gi|440778274|ref|ZP_20957040.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
gi|118164796|gb|ABK65693.1| sigma factor SigB [Mycobacterium avium 104]
gi|436721377|gb|ELP45512.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 319
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPI 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 DKINDLLEHSRDPVSLDMPVG 219
>gi|302555769|ref|ZP_07308111.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
gi|302473387|gb|EFL36480.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
Length = 339
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 90/147 (61%), Gaps = 8/147 (5%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++ ++++ LV+ +AR + G+P D++Q GN+G+++ E+FDHT+G+KFSTY
Sbjct: 99 GQRAKDHMVRANLRLVVSMARRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFSTYA 158
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+SI + +A HAR +++P ++ ++ KI K + L G+ P E+A+ +GL+
Sbjct: 159 TWWIRQSIERGLAAHARTVRLPMQVVEQLQKIAKVERRLQLDLGREPSVAEVARESGLAE 218
Query: 413 AEIRSASECLRIVG----SIDQKIGDC 435
I + LR VG S+D + D
Sbjct: 219 DRI----DWLRRVGRQAVSLDTPVDDT 241
>gi|187918567|ref|YP_001884130.1| RNA polymerase sigma factor RpoD [Borrelia hermsii DAH]
gi|119861415|gb|AAX17210.1| RNA polymerase sigma factor RpoD [Borrelia hermsii DAH]
Length = 630
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 335 EQSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 380
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 381 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L GK P D E++
Sbjct: 440 FKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELS 499
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G L ++++ R S++ IG+
Sbjct: 500 ARLGWDLKKVKTVKNVSREPVSLETPIGE 528
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 119/202 (58%), Gaps = 6/202 (2%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ +L+ G+ A+ ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFIEEVRELQASLQATKGQVAA------ELDMTEKQLESRLYQGRVAKRKMI 138
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 139 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 198
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +++ ++R +
Sbjct: 199 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMAEALEITVQQLRQLQQL 258
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 259 RRQALSLNHRVGKEEDTELMDL 280
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 115/211 (54%), Gaps = 2/211 (0%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ +ER + + + +G S+ + +S ++K+ L
Sbjct: 46 RVPLLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNLSIPIIKKRLRA 105
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 106 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR+ I++ +A +R I++P + ++K++K ++ L+ + P E+AKY L
Sbjct: 166 YWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPE 225
Query: 413 AEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
+++ S++ K+GD + L++
Sbjct: 226 EDVKDLMCKAGQPVSLETKVGDGEDTVLLDL 256
>gi|295839080|ref|ZP_06826013.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295827312|gb|EDY44634.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 360
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L + + G + LI+S LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+TRG
Sbjct: 113 LDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIRAVEKFDYTRG 172
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR+++S+ +A AR I++P + I+++ +AR+ L G P D E+A
Sbjct: 173 FKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRARRTLLQERGHEPCDAEVA 232
Query: 406 KYTGLSLAEI----RSASECLRI---VGSIDQ-KIGDCLNAKYLNIPP 445
GL+ + R A E + + VG D+ +GD + PP
Sbjct: 233 AVLGLTPERVGEVLRLAQEPVSLHTPVGGEDEVALGDLIEDGDAPSPP 280
>gi|453363975|dbj|GAC80290.1| RNA polymerase sigma factor SigB [Gordonia malaquae NBRC 108250]
Length = 332
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 87/141 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ AE+FD+ +G+KFSTY
Sbjct: 92 GDAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAAEKFDYAKGFKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++K+ + R+ L G+ D E+A +G+
Sbjct: 152 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDDELAAESGIPA 211
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I + R S+D +G
Sbjct: 212 EKIADLMDHSRDPVSLDMPVG 232
>gi|146338438|ref|YP_001203486.1| RNA polymerase sigma factor RpoD [Bradyrhizobium sp. ORS 278]
gi|146191244|emb|CAL75249.1| sigma D (sigma 70) factor of RNA polymerase [Bradyrhizobium sp. ORS
278]
Length = 703
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 465 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 524
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 525 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 584
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 585 RKVLKIAKEPLSLETPVGD 603
>gi|148257986|ref|YP_001242571.1| RNA polymerase sigma factor RpoD [Bradyrhizobium sp. BTAi1]
gi|146410159|gb|ABQ38665.1| RNA polymerase, sigma 70 subunit, RpoD [Bradyrhizobium sp. BTAi1]
Length = 702
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 464 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 523
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 524 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 583
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 584 RKVLKIAKEPLSLETPVGD 602
>gi|237751866|ref|ZP_04582346.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor RpoD [Helicobacter
winghamensis ATCC BAA-430]
gi|229376742|gb|EEO26833.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor RpoD [Helicobacter
winghamensis ATCC BAA-430]
Length = 615
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 90/145 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GY+FSTY +W
Sbjct: 379 AKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYRFSTYATWW 438
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + GK P+ +IA+ GL L ++
Sbjct: 439 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKCLQEEGKEPDLEKIAEEVGLPLDKV 498
Query: 416 RSASECLRIVGSIDQKIGDCLNAKY 440
++ + + S++ IG+ + K+
Sbjct: 499 KNVIKITKEPISLEAPIGNGEDGKF 523
>gi|414175338|ref|ZP_11429742.1| RNA polymerase sigma factor rpoD [Afipia broomeae ATCC 49717]
gi|410889167|gb|EKS36970.1| RNA polymerase sigma factor rpoD [Afipia broomeae ATCC 49717]
Length = 715
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 477 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 536
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 537 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 596
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 597 RKVLKIAKEPLSLETPVGD 615
>gi|337748350|ref|YP_004642512.1| protein SigA [Paenibacillus mucilaginosus KNP414]
gi|379723267|ref|YP_005315398.1| protein SigA [Paenibacillus mucilaginosus 3016]
gi|386725990|ref|YP_006192316.1| protein SigA [Paenibacillus mucilaginosus K02]
gi|336299539|gb|AEI42642.1| SigA [Paenibacillus mucilaginosus KNP414]
gi|378571939|gb|AFC32249.1| SigA [Paenibacillus mucilaginosus 3016]
gi|384093115|gb|AFH64551.1| protein SigA [Paenibacillus mucilaginosus K02]
Length = 378
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 81/128 (63%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+GYKFSTY +WIR++I++ +A
Sbjct: 152 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIAD 211
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK LS ++R + +
Sbjct: 212 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMDLSTDKVREIMKIAQEPV 271
Query: 427 SIDQKIGD 434
S++ IG+
Sbjct: 272 SLETPIGE 279
>gi|85715949|ref|ZP_01046926.1| RNA polymerase sigma factor [Nitrobacter sp. Nb-311A]
gi|85697147|gb|EAQ35028.1| RNA polymerase sigma factor [Nitrobacter sp. Nb-311A]
Length = 716
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 478 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 537
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 538 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 597
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 598 RKVLKIAKEPLSLETPVGD 616
>gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893958|gb|EFG73726.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 329
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 89 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 149 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 208
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 209 EKINDLLEHSRDPVSLDMPVG 229
>gi|367476411|ref|ZP_09475795.1| sigma D (sigma 70) factor of RNA polymerase [Bradyrhizobium sp. ORS
285]
gi|365271281|emb|CCD88263.1| sigma D (sigma 70) factor of RNA polymerase [Bradyrhizobium sp. ORS
285]
Length = 703
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 465 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 524
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 525 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 584
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 585 RKVLKIAKEPLSLETPVGD 603
>gi|169334166|ref|ZP_02861359.1| hypothetical protein ANASTE_00560 [Anaerofustis stercorihominis DSM
17244]
gi|169258883|gb|EDS72849.1| RNA polymerase sigma factor RpoD [Anaerofustis stercorihominis DSM
17244]
Length = 403
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++L ++ LV+ +A+ Y G+ F DL+Q GN+G+L+ E+FD+T+G+KFSTY +W
Sbjct: 167 ARKKLCEANLRLVVSIAKRYVNRGMSFLDLIQEGNLGLLKAVEKFDYTKGFKFSTYATWW 226
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+K+++ ++ L G+ P EIAK GL ++
Sbjct: 227 IRQAITRAIADQARTIRIPVHMVETINKLKRVQRMLIQDLGRDPNSHEIAKEMGLPEEKV 286
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ IG+
Sbjct: 287 RDIMKISQDPVSLETPIGE 305
>gi|443289588|ref|ZP_21028682.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
gi|385887203|emb|CCH16756.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
Length = 338
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 91/145 (62%)
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
+A G ++ L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFS
Sbjct: 94 VAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYAKGYKFS 153
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR++I++ +A AR I+IP + +++++ +AR+ L + G+ P E+A+
Sbjct: 154 TYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELAVTLGREPTVAEVARALD 213
Query: 410 LSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ R S+DQ +GD
Sbjct: 214 IPEFQVIELISYDREPVSLDQAVGD 238
>gi|456352946|dbj|BAM87391.1| sigma D (sigma 70) factor of RNA polymerase [Agromonas
oligotrophica S58]
Length = 703
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 465 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 524
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 525 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 584
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 585 RKVLKIAKEPLSLETPVGD 603
>gi|400536819|ref|ZP_10800353.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
gi|400329832|gb|EJO87331.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
Length = 319
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 EKINDLLEHSRDPVSLDMPVG 219
>gi|26665386|dbj|BAC44904.1| principal sigma factor [Fischerella major NIES-592]
Length = 203
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 86/133 (64%)
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420
++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIVK 120
Query: 421 CLRIVGSIDQKIG 433
++ S++ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|322379076|ref|ZP_08053479.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS1]
gi|322379940|ref|ZP_08054217.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS5]
gi|321147638|gb|EFX42261.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS5]
gi|321148568|gb|EFX43065.1| RNA polymerase sigma factor RpoD [Helicobacter suis HS1]
Length = 634
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 89/145 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ +S LV+ +A+ Y G+PF DL+Q GN+G+++ ++F+H + YKFSTY +W
Sbjct: 395 AKNKMARSNLRLVVSIAKRYTSRGLPFLDLIQEGNIGLMKAVDKFEHEKNYKFSTYATWW 454
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
I+++IS+ +A AR I+IP + I++I K + +GK P+ +AK GL L ++
Sbjct: 455 IKQAISRAIADQARTIRIPIHMIDTINRINKVMRKYMQENGKEPDLDLVAKEVGLPLDKV 514
Query: 416 RSASECLRIVGSIDQKIGDCLNAKY 440
R+ + + S++ +G+ + K+
Sbjct: 515 RNVIKITKEPISLESPVGNDDDGKF 539
>gi|192289891|ref|YP_001990496.1| RNA polymerase sigma factor RpoD [Rhodopseudomonas palustris TIE-1]
gi|192283640|gb|ACF00021.1| RNA polymerase, sigma 70 subunit, RpoD family [Rhodopseudomonas
palustris TIE-1]
Length = 698
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 460 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 519
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 520 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 579
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 580 RKVLKIAKEPLSLETPVGD 598
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 102/169 (60%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 154 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 213
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
Q ++FD ++GY+FSTY +WIR+ +++ +A +R I++P + +++KI+KA++ ++
Sbjct: 214 QAVKKFDPSKGYRFSTYAYWWIRQGMTRAIATQSRLIRLPVHITEKLNKIKKAQRKISQM 273
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
G+ EIA+ L+ E+R + S++ K+G + + L++
Sbjct: 274 RGRTATVEEIAQELALTPEEVRELLMKVPRSVSLEIKVGKEKDTELLDL 322
>gi|254457867|ref|ZP_05071294.1| sigma 28 [Sulfurimonas gotlandica GD1]
gi|373868949|ref|ZP_09605347.1| RNA polymerase sigma factor rpoD (Sigma-70) [Sulfurimonas
gotlandica GD1]
gi|207085260|gb|EDZ62545.1| sigma 28 [Sulfurimonas gotlandica GD1]
gi|372471050|gb|EHP31254.1| RNA polymerase sigma factor rpoD (Sigma-70) [Sulfurimonas
gotlandica GD1]
Length = 623
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 88/141 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 388 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 447
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + HGK P+ IA GLS+ ++++
Sbjct: 448 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVEVIALEVGLSVEKVKNVI 507
Query: 420 ECLRIVGSIDQKIGDCLNAKY 440
+ + S++ IG+ + ++
Sbjct: 508 KITKEPISLEAPIGNEDDGRF 528
>gi|1553033|gb|AAC45108.1| primary sigma factor, partial [Borrelia japonica]
Length = 450
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 25/223 (11%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKGIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 322
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
GK P D E++ G L ++++ R S++ IG+
Sbjct: 323 IQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGE 365
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 12/197 (6%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK--QHLAFG 293
L A+ E E+++ + R L KE G+ +L A G+ ++V+K + +
Sbjct: 145 LLTAKQEIELAQCAEAF-KFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKD 203
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD RG+K
Sbjct: 204 WNDKQGEAAERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIGLMRAVEKFDWRRGFK 263
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKY 407
FSTY +WIR++I++ +A +R I+IP + I+K ++ + L + + P E++K
Sbjct: 264 FSTYATWWIRQAITRALADQSRTIRIPVHMVETINKYKRIERELEQKYERPPTAEEVSKE 323
Query: 408 TGLSLAEIRSASECLRI 424
G+ EI A E L+I
Sbjct: 324 MGI---EIEKAQEILKI 337
>gi|209884282|ref|YP_002288139.1| RNA polymerase sigma factor RpoD [Oligotropha carboxidovorans OM5]
gi|337742031|ref|YP_004633759.1| RNA polymerase sigma factor RpoD [Oligotropha carboxidovorans OM5]
gi|386031047|ref|YP_005951822.1| RNA polymerase sigma factor RpoD [Oligotropha carboxidovorans OM4]
gi|209872478|gb|ACI92274.1| RNA polymerase sigma factor RpoD [Oligotropha carboxidovorans OM5]
gi|336096115|gb|AEI03941.1| RNA polymerase sigma factor RpoD [Oligotropha carboxidovorans OM4]
gi|336099695|gb|AEI07518.1| RNA polymerase sigma factor RpoD [Oligotropha carboxidovorans OM5]
Length = 708
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 470 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 529
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 530 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 589
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 590 RKVLKIAKEPLSLETPVGD 608
>gi|94971322|ref|YP_593370.1| sigma 38, RpoS [Candidatus Koribacter versatilis Ellin345]
gi|94553372|gb|ABF43296.1| RNA polymerase, sigma 70 subunit, RpoD [Candidatus Koribacter
versatilis Ellin345]
Length = 574
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 8/187 (4%)
Query: 256 ERIKTTLEKESGK-AASLNCWAQAAGVS-------ERVLKQHLAFGWYCREELIKSTRPL 307
E K L+K+S L Q AGVS +R + Q ++ELI++ L
Sbjct: 285 EETKKELKKQSRTLKGDLERMEQEAGVSIAELKRTQREIIQGDMDAEQAKKELIEANLRL 344
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A
Sbjct: 345 VVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQ 404
Query: 368 ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGS 427
AR I+IP + I+K+ + + L G+ P EIAK + +A++R + + S
Sbjct: 405 ARTIRIPVHMIETINKLIRTSRQLVQELGREPSSEEIAKRMDIPVAKVRKVLKIAQEPIS 464
Query: 428 IDQKIGD 434
++ IG+
Sbjct: 465 LETPIGE 471
>gi|395768265|ref|ZP_10448780.1| RNA polymerase principal sigma factor [Streptomyces acidiscabies
84-104]
Length = 332
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 91/156 (58%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
+G + L+ +A ++ I+S LV+ +AR Y G+P DL+Q GN G+++ E
Sbjct: 79 SGATREELEALVAASERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVE 138
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++ HG+
Sbjct: 139 KFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRD 198
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
PE EIAK G + A + + R S++ + D
Sbjct: 199 PEPAEIAKELGSNPARVVDVLDWARDPVSLNMAVDD 234
>gi|383774184|ref|YP_005453251.1| sigma 70 [Bradyrhizobium sp. S23321]
gi|381362309|dbj|BAL79139.1| sigma 70 [Bradyrhizobium sp. S23321]
Length = 713
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 475 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 534
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 535 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 594
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 595 RKVLKIAKEPLSLETPVGD 613
>gi|118581452|ref|YP_902702.1| RpoD family RNA polymerase sigma factor [Pelobacter propionicus DSM
2379]
gi|118504162|gb|ABL00645.1| RNA polymerase, sigma 70 subunit, RpoD [Pelobacter propionicus DSM
2379]
Length = 582
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 103/174 (59%), Gaps = 8/174 (4%)
Query: 262 LEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
+E ESG KA+ L+ QA + E K +A + ELI++ LV+ +A+ Y G+
Sbjct: 317 IELESGFKASELSAALQA--IEEGECKARIA-----KSELIEANLRLVVSIAKKYTNRGL 369
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNRE 380
F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP +
Sbjct: 370 QFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIET 429
Query: 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
I+K+ + + L +G+ P EIA+ L L ++R + + S++ IG+
Sbjct: 430 INKLIRTSRQLVQENGREPAPEEIAERMQLPLDKVRKVLKIAKEPISLETPIGE 483
>gi|421597782|ref|ZP_16041327.1| RNA polymerase sigma factor RpoD, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404270107|gb|EJZ34242.1| RNA polymerase sigma factor RpoD, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 425
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 187 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 246
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 247 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 306
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 307 RKVLKIAKEPLSLETPVGD 325
>gi|297570260|ref|YP_003691604.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfurivibrio
alkaliphilus AHT2]
gi|296926175|gb|ADH86985.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfurivibrio
alkaliphilus AHT2]
Length = 555
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 86/138 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ L++S LV+ +A+ Y G G+ DL+Q GN+G+++ E+F++ RGYKFSTY +W
Sbjct: 316 AKNRLVQSNLRLVVSVAKKYAGRGLQLLDLVQEGNIGLMKAVEKFEYRRGYKFSTYATWW 375
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+++++ +A R I+IP + I+++ K K HG+ P E+A++ G+ +A++
Sbjct: 376 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEYQRQHGREPTPEEMAEHLGVDIAKV 435
Query: 416 RSASECLRIVGSIDQKIG 433
+S + + S+D +G
Sbjct: 436 KSILKIAKEPLSLDTPVG 453
>gi|441521275|ref|ZP_21002936.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
gi|441459107|dbj|GAC60897.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
Length = 332
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 87/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 92 GEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++K+ + R+ L G+ D E+A +G+
Sbjct: 152 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPA 211
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+I + R S+D +G+
Sbjct: 212 EKIADLMDHSRDPVSLDMPVGN 233
>gi|303229406|ref|ZP_07316196.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|303230872|ref|ZP_07317619.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|429760133|ref|ZP_19292623.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
gi|302514632|gb|EFL56627.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|302515942|gb|EFL57894.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|429178538|gb|EKY19816.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
Length = 388
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 92/156 (58%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 135 AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 194
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 195 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 254
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P EIA+ G++ +R + + S++ IG+
Sbjct: 255 PTPEEIAEGMGITAERVREIQKIAQEPVSLETPIGE 290
>gi|269925235|ref|YP_003321858.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269788895|gb|ACZ41036.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 344
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 92/149 (61%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK+ + G R +LI+ LV+ +AR Y G G+P +DL++ GN+G+++ AE+FD RG
Sbjct: 97 LKKAVEEGKAARHKLIEHNLRLVVSIARRYVGHGMPLADLIEEGNLGLMRAAEKFDWRRG 156
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
++FSTY +WIR+++++ +A R I++P + ++KI + + L+ G+ P + E+A
Sbjct: 157 FRFSTYATWWIRQAVTRGLAEGGRTIRLPVHVGEALTKIGRETQRLSLELGREPTNQELA 216
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ TGLS I R+ S++ +G+
Sbjct: 217 EATGLSPERIDEYKNASRLPLSLEAPLGE 245
>gi|288818771|ref|YP_003433119.1| RNA polymerase sigma factor RpoD [Hydrogenobacter thermophilus
TK-6]
gi|384129520|ref|YP_005512133.1| RpoD subfamily RNA polymerase sigma-70 subunit [Hydrogenobacter
thermophilus TK-6]
gi|288788171|dbj|BAI69918.1| RNA polymerase sigma factor RpoD [Hydrogenobacter thermophilus
TK-6]
gi|308752357|gb|ADO45840.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Hydrogenobacter
thermophilus TK-6]
Length = 570
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 85/139 (61%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ ++K LV+ +A+ Y G+ F DL+Q GN+G+++ +++D+ +GYKFSTY +W
Sbjct: 333 AKQVMVKCNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWW 392
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+ I KA K L G+ P EIAKY G+S+ +
Sbjct: 393 IRQAITRAIADQARTIRIPVHMIETINDITKAHKKLFQELGREPFPEEIAKYLGISVEKA 452
Query: 416 RSASECLRIVGSIDQKIGD 434
R + S++ IGD
Sbjct: 453 RKVMRTSQEPISLETPIGD 471
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
WA+ +G+ + L+Q L G R+ +I++ LV+ +A+ Y+ G+ DL+Q G +G
Sbjct: 113 TLWAKESGLDTKELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLG 172
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALT 392
+ + E+FD TRG++FSTY +WIR+ I++ +A +R I++P + ++++I++ ++ +
Sbjct: 173 LERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIA 232
Query: 393 NSHGKYPEDIEIAKYTGLS-------LAEI-RSASECLRIVGSIDQKIGDCLN 437
+ G+ ++AK G+S LA + RS S R+ D ++GD L
Sbjct: 233 SEKGRLASVSDLAKELGVSEETVRQTLARVPRSVSLETRVGKDQDTQLGDLLE 285
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 103/178 (57%), Gaps = 12/178 (6%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ G+S + L + + G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 174 WAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 233
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++ +
Sbjct: 234 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQT 293
Query: 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI----------DQKIGDCLNAKYLN 442
G+ +IA+ ++ ++R L++ SI D ++GD L L+
Sbjct: 294 KGRTATVEDIARELKMTAPQVREV--LLKVPRSISLETKVGKERDTELGDLLETDALS 349
>gi|419718484|ref|ZP_14245801.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
gi|383305319|gb|EIC96687.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
Length = 407
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 87/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 169 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 228
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 229 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 288
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 289 VMEIMQIAREPASLETPIGE 308
>gi|374577873|ref|ZP_09650969.1| RNA polymerase sigma factor, sigma-70 family [Bradyrhizobium sp.
WSM471]
gi|374426194|gb|EHR05727.1| RNA polymerase sigma factor, sigma-70 family [Bradyrhizobium sp.
WSM471]
Length = 716
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 478 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 537
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 538 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 597
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 598 RKVLKIAKEPLSLETPVGD 616
>gi|365153375|ref|ZP_09349815.1| RNA polymerase sigma factor RpoD [Campylobacter sp. 10_1_50]
gi|416117248|ref|ZP_11594551.1| RNA polymerase sigma factor RpoD [Campylobacter concisus UNSWCD]
gi|363651903|gb|EHL90955.1| RNA polymerase sigma factor RpoD [Campylobacter sp. 10_1_50]
gi|384577205|gb|EIF06497.1| RNA polymerase sigma factor RpoD [Campylobacter concisus UNSWCD]
Length = 617
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 382 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQA 441
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 442 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVDKVKQVI 501
Query: 420 ECLR--------IVGSIDQKIGDCLNAK 439
+ + I D K GD + K
Sbjct: 502 KITKEPISLEAPIANEDDGKFGDFVEDK 529
>gi|338971873|ref|ZP_08627252.1| RNA polymerase sigma factor RpoD [Bradyrhizobiaceae bacterium
SG-6C]
gi|414168611|ref|ZP_11424574.1| RNA polymerase sigma factor RpoD [Afipia clevelandensis ATCC 49720]
gi|338234767|gb|EGP09878.1| RNA polymerase sigma factor RpoD [Bradyrhizobiaceae bacterium
SG-6C]
gi|410887347|gb|EKS35157.1| RNA polymerase sigma factor RpoD [Afipia clevelandensis ATCC 49720]
Length = 716
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 478 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 537
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 538 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 597
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 598 RKVLKIAKEPLSLETPVGD 616
>gi|78777303|ref|YP_393618.1| RNA polymerase sigma factor RpoD [Sulfurimonas denitrificans DSM
1251]
gi|78497843|gb|ABB44383.1| sigma 28 (Flagella/Sporulation) [Sulfurimonas denitrificans DSM
1251]
Length = 623
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 84/134 (62%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 388 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQA 447
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + HGK P+ IA GLS+ ++++
Sbjct: 448 ISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVEVIALEVGLSVEKVKNVI 507
Query: 420 ECLRIVGSIDQKIG 433
+ + S++ IG
Sbjct: 508 KITKEPISLEAPIG 521
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 118/202 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ L+ + G + A ++E+ L+ L G + ++I
Sbjct: 86 EVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQLENRLYQGRVAKRKMI 145
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 146 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 205
Query: 362 KMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421
+ +A AR I++P + +++K++KA++ L + P + E+A+ +S+ ++R +
Sbjct: 206 RAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQLRQLQQL 265
Query: 422 LRIVGSIDQKIGDCLNAKYLNI 443
R S++ ++G + + +++
Sbjct: 266 RRQALSLNHRVGKEEDTELMDL 287
>gi|22298042|ref|NP_681289.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
gi|22294220|dbj|BAC08051.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 375
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 100/164 (60%)
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
A WA+AA ++ L+ G + +L+++ LV+ +A+ Y+ G+ F DL+Q G
Sbjct: 110 AGRQAWAKAANITLSELQHIERQGQRAKNQLLQANLRLVVNIAKKYQHHGVEFLDLIQEG 169
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARK 389
++G+ + E+FD T+G++FSTY +WIR+SI++ VA +R I++P + +++KI++A++
Sbjct: 170 SLGLERAVEKFDPTKGFRFSTYAYWWIRQSITRAVASQSRTIRLPIHMVEKLNKIKRAQR 229
Query: 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
L G P +IA+ L ++++R + +++Q++G
Sbjct: 230 RLAAQRGAMPSLADIAQELNLEVSQVRQVLMAVPKSVALEQRVG 273
>gi|414165560|ref|ZP_11421807.1| RNA polymerase sigma factor rpoD [Afipia felis ATCC 53690]
gi|410883340|gb|EKS31180.1| RNA polymerase sigma factor rpoD [Afipia felis ATCC 53690]
Length = 709
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 471 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 530
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 531 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 590
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 591 RKVLKIAKEPLSLETPVGD 609
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 86/141 (60%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G+ +E++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD TRGYKFSTY
Sbjct: 94 GYQAKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQEGSLGLERGVEKFDPTRGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++KI++ ++ L G P EIA L
Sbjct: 154 YWWIRQAITRAIAEQGRTIRLPIHLTEKLNKIKRTQRELAQKLGHTPSTTEIAAELSLDP 213
Query: 413 AEIRSASECLRIVGSIDQKIG 433
EIR R S++ ++G
Sbjct: 214 KEIRDYLLLARQPLSLELRVG 234
>gi|315652381|ref|ZP_07905370.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
gi|315485355|gb|EFU75748.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
Length = 410
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 87/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 291
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 292 VMEIMQIAREPASLETPIGE 311
>gi|92118365|ref|YP_578094.1| RNA polymerase sigma factor RpoD [Nitrobacter hamburgensis X14]
gi|91801259|gb|ABE63634.1| RNA polymerase, sigma 70 subunit, RpoD [Nitrobacter hamburgensis
X14]
Length = 717
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 479 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 538
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 539 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 598
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 599 RKVLKIAKEPLSLETPVGD 617
>gi|269798255|ref|YP_003312155.1| RpoD subfamily RNA polymerase sigma-70 subunit [Veillonella parvula
DSM 2008]
gi|282850493|ref|ZP_06259872.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294792116|ref|ZP_06757264.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
gi|294793987|ref|ZP_06759124.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|269094884|gb|ACZ24875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Veillonella
parvula DSM 2008]
gi|282579986|gb|EFB85390.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294455557|gb|EFG23929.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|294457346|gb|EFG25708.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
Length = 386
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 93/156 (59%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 133 AGAQEDATYKDIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 192
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 193 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 252
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P EIA+ G+++ +R + + S++ IG+
Sbjct: 253 PLPEEIAEGMGITVERVREIQKIAQEPVSLETPIGE 288
>gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis F11]
gi|253798208|ref|YP_003031209.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
1435]
gi|308232219|ref|ZP_07415326.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308369834|ref|ZP_07419229.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308371106|ref|ZP_07423839.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308372374|ref|ZP_07428435.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308373485|ref|ZP_07432499.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308374669|ref|ZP_07436917.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308375503|ref|ZP_07444157.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308377104|ref|ZP_07441142.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308378072|ref|ZP_07481430.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308379289|ref|ZP_07485765.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308380449|ref|ZP_07489983.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|385991992|ref|YP_005910290.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
gi|148722426|gb|ABR07051.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis F11]
gi|253319711|gb|ACT24314.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
1435]
gi|308214646|gb|EFO74045.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308326293|gb|EFP15144.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308329821|gb|EFP18672.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308333464|gb|EFP22315.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308337459|gb|EFP26310.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308341132|gb|EFP29983.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308346083|gb|EFP34934.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308348958|gb|EFP37809.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308353656|gb|EFP42507.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308357503|gb|EFP46354.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308361457|gb|EFP50308.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|339299185|gb|AEJ51295.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
Length = 345
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 88/141 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 105 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 164
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 165 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 224
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 225 DKINDLLEHSRDPVSLDMPVG 245
>gi|358064323|ref|ZP_09150899.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
gi|356697448|gb|EHI59031.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
Length = 376
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 87/139 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 140 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 199
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ +S ++
Sbjct: 200 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALEMSEDKV 259
Query: 416 RSASECLRIVGSIDQKIGD 434
+ R S++ IG+
Sbjct: 260 MEIMQIAREPASLETPIGE 278
>gi|203284607|ref|YP_002222347.1| RNA polymerase sigma-70 factor [Borrelia duttonii Ly]
gi|201084050|gb|ACH93641.1| RNA polymerase sigma-70 factor [Borrelia duttonii Ly]
Length = 630
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 335 EKSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 380
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 381 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L GK P D E++
Sbjct: 440 FKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLVQVLGKDPTDEELS 499
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G L ++++ R S++ IG+
Sbjct: 500 IRLGWDLKKVKTVKNVSREPVSLETPIGE 528
>gi|386398278|ref|ZP_10083056.1| RNA polymerase sigma factor, sigma-70 family [Bradyrhizobium sp.
WSM1253]
gi|385738904|gb|EIG59100.1| RNA polymerase sigma factor, sigma-70 family [Bradyrhizobium sp.
WSM1253]
Length = 716
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 478 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 537
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 538 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 597
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 598 RKVLKIAKEPLSLETPVGD 616
>gi|291453499|ref|ZP_06592889.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|359149807|ref|ZP_09182739.1| RNA polymerase principal sigma factor hrdD [Streptomyces sp. S4]
gi|421740810|ref|ZP_16179040.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|17366575|sp|Q59914.1|HRDD_STRGR RecName: Full=RNA polymerase principal sigma factor HrdD
gi|510454|emb|CAA56305.1| sigma factor [Streptomyces griseus]
gi|291356448|gb|EFE83350.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|406690772|gb|EKC94563.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 332
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 85/140 (60%)
Query: 266 SGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDL 325
+GK + +AG S L+ +A G ++ I+S LV+ +AR Y G+P DL
Sbjct: 66 AGKILDGEVDSDSAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDL 125
Query: 326 LQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQ 385
+Q GN G+++ E+FD+ +G+KFSTY +WIR++I++ +A +R I++P L E+ +I+
Sbjct: 126 IQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIR 185
Query: 386 KARKALTNSHGKYPEDIEIA 405
+ ++ +G+ PE EIA
Sbjct: 186 RVQREFNRENGRDPEPAEIA 205
>gi|1657704|gb|AAC44535.1| sigma factor MytB [Mycobacterium tuberculosis]
Length = 345
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 88/141 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 105 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 164
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 165 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 224
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 225 DKINDLLEHSRDPVSLDMPVG 245
>gi|401679368|ref|ZP_10811299.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
gi|400219589|gb|EJO50453.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
Length = 388
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 92/156 (58%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 135 AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 194
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKY 398
+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G+
Sbjct: 195 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGRE 254
Query: 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
P EIA+ G++ +R + + S++ IG+
Sbjct: 255 PTPEEIAEGMGITAERVREIQKIAQEPVSLETPIGE 290
>gi|398822564|ref|ZP_10580943.1| RNA polymerase sigma factor, sigma-70 family [Bradyrhizobium sp.
YR681]
gi|398226795|gb|EJN13038.1| RNA polymerase sigma factor, sigma-70 family [Bradyrhizobium sp.
YR681]
Length = 717
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 479 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 538
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 539 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 598
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 599 RKVLKIAKEPLSLETPVGD 617
>gi|384215664|ref|YP_005606830.1| primary sigma factor [Bradyrhizobium japonicum USDA 6]
gi|354954563|dbj|BAL07242.1| primary sigma factor [Bradyrhizobium japonicum USDA 6]
Length = 719
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 481 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 540
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 541 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 600
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 601 RKVLKIAKEPLSLETPVGD 619
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 35/232 (15%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE + GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 92 TEAETNGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAE 151
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
++ +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ +
Sbjct: 152 LANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAV 211
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FD TRGY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++ +
Sbjct: 212 EKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSR 271
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSI----------DQKIGDCLNAK 439
+IA ++ +IR LR+ S+ D ++GD L +
Sbjct: 272 TATIDDIATELKMTPDQIREV--LLRVPRSVSLETKVGTDKDTELGDLLETE 321
>gi|254388870|ref|ZP_05004102.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294813166|ref|ZP_06771809.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|326441537|ref|ZP_08216271.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|197702589|gb|EDY48401.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294325765|gb|EFG07408.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
Length = 333
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 97/168 (57%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
+ A G + + L+ +A G ++ I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 SDAGGATHKELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLVQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSH 395
E+FD+++G+KFSTY +WIR++I++ +A +R I++P L E+ +I++ ++
Sbjct: 137 AVEKFDYSKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREK 196
Query: 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
G+ PE EIA+ G + + + R S++ + D ++ ++
Sbjct: 197 GREPEAAEIAQELGSTPERVTDVLDWARDPVSLNMAVDDAGETQFGDL 244
>gi|299131999|ref|ZP_07025194.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Afipia sp. 1NLS2]
gi|298592136|gb|EFI52336.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Afipia sp. 1NLS2]
Length = 709
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 471 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 530
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 531 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 590
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 591 RKVLKIAKEPLSLETPVGD 609
>gi|114797662|ref|YP_761566.1| RNA polymerase sigma factor RpoD [Hyphomonas neptunium ATCC 15444]
gi|114737836|gb|ABI75961.1| RNA polymerase sigma factor RpoD [Hyphomonas neptunium ATCC 15444]
Length = 666
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 428 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 487
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + ++ + + G+ P E+A+ GL L +I
Sbjct: 488 IRQAITRSIADQARTIRIPVHMIETINKIIRTQRQMLHEIGREPTPEELAEKLGLPLEKI 547
Query: 416 RSASECLRIVGSIDQKIGDCLNAKYLNIPPFFFPSFAI 453
R + + S++ IGD ++ N+ F A+
Sbjct: 548 RKVLKIAKEPISLETPIGDDEDS---NLGDFIEDKMAL 582
>gi|32266044|ref|NP_860076.1| RNA polymerase sigma factor RpoD [Helicobacter hepaticus ATCC
51449]
gi|32262093|gb|AAP77142.1| RNA polymerase sigma 70 factor [Helicobacter hepaticus ATCC 51449]
Length = 623
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 88/145 (60%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +G+KFSTY +W
Sbjct: 384 AKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWW 443
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++IS+ +A AR I+IP + I++I K + GK P+ IAK GL + ++
Sbjct: 444 IRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHVQETGKEPDIDFIAKEVGLPIDKV 503
Query: 416 RSASECLRIVGSIDQKIGDCLNAKY 440
++ + + S+D IG + K+
Sbjct: 504 KNVIKITKEPVSLDAPIGSDDDGKF 528
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 120/222 (54%), Gaps = 4/222 (1%)
Query: 220 PTIFSAERALNSRG---RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
P + + + RG + L + +SK ++ L++ ++ L+++ G S A
Sbjct: 139 PELLQSRNRIYLRGTVSKELLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMA 198
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
Q+ +S L+ + + RE L S LV+ +A+ Y LG+ SDL+Q G +G+L+G
Sbjct: 199 QSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRG 258
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHG 396
E+FD +RG++ STYV +WIR+ +S+ +A +++ ++P L+ + I+ A+ AL + G
Sbjct: 259 IEKFDASRGFRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYALED-QG 317
Query: 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNA 438
P IAK +S ++ +A+E + S+DQ+ LN
Sbjct: 318 VSPTTQNIAKLLNISEKKVHNATEAVNKALSLDQQAFPSLNG 359
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 92/152 (60%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
E+ LK+ + G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 191 EKALKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDY 250
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402
T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + + L G P
Sbjct: 251 TKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHDPSPE 310
Query: 403 EIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
EIA+ + + ++R + + S++ IG+
Sbjct: 311 EIAEEMNMPVDKVREILKIAQEPVSLETPIGE 342
>gi|148654372|ref|YP_001274577.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148566482|gb|ABQ88627.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 402
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 283 ERVL-KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
ERV+ +Q +A G R+ LI++ LV+ +A+ Y G+ DL+Q GN+G+++ E+FD
Sbjct: 151 ERVMYEQQVAQGNEARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFD 210
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPED 401
+T+G+KFSTY +WIR++I++ +A +R I++P + IS++++ L + + P
Sbjct: 211 YTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTP 270
Query: 402 IEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
EIA G+S ++R E S++ +G
Sbjct: 271 EEIADAMGISSTKVRRTLEASMHPLSLEMPVG 302
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 89/142 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQQLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+I E R S+D +G+
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGN 220
>gi|157164653|ref|YP_001467098.1| RNA polymerase sigma factor RpoD [Campylobacter concisus 13826]
gi|112799942|gb|EAT97286.1| RNA polymerase sigma factor RpoD (Sigma-A) (Major vegetative
sigmafactor) [Campylobacter concisus 13826]
Length = 617
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 382 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQA 441
Query: 360 ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419
IS+ +A AR I+IP + I++I K + GK P+ IAK GLS+ +++
Sbjct: 442 ISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVDKVKQVI 501
Query: 420 ECLR--------IVGSIDQKIGDCLNAK 439
+ + I D K GD + K
Sbjct: 502 KITKEPISLEAPIANEEDGKFGDFVEDK 529
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 35/232 (15%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 90 TEAETKGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAE 149
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
++ +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ +
Sbjct: 150 LANLSVEELKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAV 209
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397
E+FD TRGY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++ +
Sbjct: 210 EKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSR 269
Query: 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSI----------DQKIGDCLNAK 439
+IA ++ +IR LR+ S+ D ++GD L +
Sbjct: 270 TATIDDIATELKMTPDQIREV--LLRVPRSVSLETKVGTDKDTELGDLLETE 319
>gi|27382460|ref|NP_773989.1| RNA polymerase sigma factor RpoD [Bradyrhizobium japonicum USDA
110]
gi|1742976|emb|CAA67902.1| primary sigma factor [Bradyrhizobium japonicum]
gi|27355631|dbj|BAC52614.1| primary sigma factor [Bradyrhizobium japonicum USDA 110]
Length = 719
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 88/139 (63%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 481 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 540
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR++I++ +A AR I+IP + I+KI + + + N G+ P E+A+ G+ L ++
Sbjct: 541 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKV 600
Query: 416 RSASECLRIVGSIDQKIGD 434
R + + S++ +GD
Sbjct: 601 RKVLKIAKEPLSLETPVGD 619
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 113/210 (53%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +K L+ + G+ ++ WA G+S L+ L G
Sbjct: 9 KKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSG 68
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
+E+LI + +V+ +A+NY G G+ F DLLQ G++G+++ E+F G +F++Y
Sbjct: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
Query: 354 YWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLA 413
+WIR++I + + H+R I++P + + K+ +A+K +P E+A+ G+++
Sbjct: 129 WWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVD 188
Query: 414 EIRSASECLRIVGSIDQKIGDCLNAKYLNI 443
++ RI S+ Q + + Y I
Sbjct: 189 KLEILLSAARIPLSMQQTVWTDQDTTYQEI 218
>gi|449064777|ref|YP_007431860.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
gi|449033285|gb|AGE68712.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 338
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 88/141 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 98 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 157
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 158 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 217
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 218 DKINDLLEHSRDPVSLDMPVG 238
>gi|386852074|ref|YP_006270087.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359839578|gb|AEV88019.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 329
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 90/145 (62%)
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
+A G + L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFS
Sbjct: 86 IAEGRAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 145
Query: 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG 409
TY +WIR++I++ +A AR I+IP + +++++ +AR+ L+ G+ P EIA
Sbjct: 146 TYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRDLSAQLGREPSIAEIATAMA 205
Query: 410 LSLAEIRSASECLRIVGSIDQKIGD 434
+ ++ R S+DQ +G+
Sbjct: 206 VPEFQVIELISYDREPVSLDQAVGE 230
>gi|326384463|ref|ZP_08206143.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
gi|326196808|gb|EGD54002.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
Length = 332
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 87/142 (61%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 92 GEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++IS+ +A +R I++P L +++K+ + R+ L G+ D E+A +G+
Sbjct: 152 TWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPA 211
Query: 413 AEIRSASECLRIVGSIDQKIGD 434
+I + R S+D +G+
Sbjct: 212 EKIADLMDHSRDPVSLDMPVGN 233
>gi|374307576|ref|YP_005054007.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
gi|291166412|gb|EFE28458.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
Length = 372
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 102/172 (59%), Gaps = 7/172 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK + L+ + L Q + G +++L+++ LV+ +A+ Y G G+ F
Sbjct: 108 KEIGKISLLSAEEEIE------LAQKMDQGSELAKKKLVEANLRLVVSIAKRYVGRGMLF 161
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IP + I+
Sbjct: 162 LDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 221
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
K+ + ++ L G+ P EI+K +S+ +IR + + S++ IG+
Sbjct: 222 KLIRVQRQLLQELGREPRPEEISKVMDMSVEKIREIQKISQEPVSLETPIGE 273
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ G+S + L L G +E +I++ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 138 WAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 197
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394
+ ++FD T+GY+FSTY +WIR+ I++ +A +R I++P + +++KI+KA++ ++ +
Sbjct: 198 RAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQT 257
Query: 395 HGKYPEDIEIAKYTGLSLAEI--------RSASECLRIVGSIDQKIGDCLNAK 439
G P ++A+ ++ ++ RS S +R+ D ++GD L +
Sbjct: 258 QGCTPSLDDVAQALEMTPEQVREVLQKVPRSVSLEIRVGKDRDTELGDLLETQ 310
>gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|254551766|ref|ZP_05142213.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746512|ref|ZP_06505890.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|294994199|ref|ZP_06799890.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis 210]
gi|297635318|ref|ZP_06953098.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
4207]
gi|297732314|ref|ZP_06961432.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
R506]
gi|375295476|ref|YP_005099743.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|385995613|ref|YP_005913911.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|392431684|ref|YP_006472728.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
gi|422813758|ref|ZP_16862130.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|424948366|ref|ZP_18364062.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|289687040|gb|EFD54528.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|323718704|gb|EGB27866.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|328457981|gb|AEB03404.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|339295567|gb|AEJ47678.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|358232881|dbj|GAA46373.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|392053093|gb|AFM48651.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
Length = 333
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 88/141 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 93 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 152
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + G+ D E+A +G+ +
Sbjct: 153 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPI 212
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 213 DKINDLLEHSRDPVSLDMPVG 233
>gi|156744261|ref|YP_001434390.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156235589|gb|ABU60372.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 399
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 98/171 (57%), Gaps = 2/171 (1%)
Query: 265 ESGKAA--SLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
E+G A +L C ++ + +Q +A G R+ LI++ LV+ +A+ Y G+
Sbjct: 129 EAGHRARRALECEEYSSWQERMMYEQQVAQGNEARQHLIQANLRLVVSIAKKYTSYGLTM 188
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREIS 382
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A +R I++P + IS
Sbjct: 189 MDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAIS 248
Query: 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
++++A L + P EIA G+S ++R E S++ +G
Sbjct: 249 QVKRASHKLQQMMQREPTPEEIADAMGISSTKVRRTLEASMHPLSLEMPVG 299
>gi|386859947|ref|YP_006272653.1| RNA polymerase sigma factor [Borrelia crocidurae str. Achema]
gi|384934828|gb|AFI31501.1| RNA polymerase sigma factor [Borrelia crocidurae str. Achema]
Length = 604
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 309 EKSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 354
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 355 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 413
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L GK P D E++
Sbjct: 414 FKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLVQVLGKDPTDEELS 473
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGD 434
G L ++++ R S++ IG+
Sbjct: 474 IRLGWDLKKVKTVKNVSREPVSLETPIGE 502
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 88/141 (62%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 90 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 149
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A R I++P L +++K+ + ++ L G+ E+AK +GL+
Sbjct: 150 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATTDELAKESGLTP 209
Query: 413 AEIRSASECLRIVGSIDQKIG 433
A++ + R S+D +G
Sbjct: 210 AKVSDLLDHARDPVSLDMPVG 230
>gi|402312660|ref|ZP_10831584.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
gi|400369118|gb|EJP22121.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
Length = 410
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 87/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 291
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 292 VMEIMQIAREPASLETPIGE 311
>gi|334133805|ref|ZP_08507347.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
gi|333608654|gb|EGL19944.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
Length = 374
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 81/128 (63%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+GYKFSTY +WIR++I++ +A
Sbjct: 148 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIAD 207
Query: 367 HARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVG 426
AR I+IP + I+K+ + + L G+ P EIAK LS ++R + +
Sbjct: 208 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMELSTDKVREIMKIAQEPV 267
Query: 427 SIDQKIGD 434
S++ IG+
Sbjct: 268 SLETPIGE 275
>gi|330469769|ref|YP_004407512.1| RpoD subfamily RNA polymerase sigma-70 subunit [Verrucosispora
maris AB-18-032]
gi|328812740|gb|AEB46912.1| RNA polymerase, sigma 70 subunit, rpod subfamily protein
[Verrucosispora maris AB-18-032]
Length = 333
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 91/155 (58%)
Query: 280 GVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
GV+ L + +A G ++ I++ LV+ +AR Y G+P DL+Q GN G+++ E+
Sbjct: 82 GVTRDELTRLVAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEK 141
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYP 399
FD+ RGYKFSTY +WIR++IS+ +A+ R +++P L ++++++ + LT G P
Sbjct: 142 FDYERGYKFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNVARQLTRELGSDP 201
Query: 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
E +IA G+++ + + S+D +GD
Sbjct: 202 EPEQIAAALGVTVERVNELVRWSQDTVSLDTPVGD 236
>gi|302386858|ref|YP_003822680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
saccharolyticum WM1]
gi|302197486|gb|ADL05057.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
saccharolyticum WM1]
Length = 380
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 97/171 (56%), Gaps = 5/171 (2%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G LN + R+ K+ +E LI++ LV+ +A+ Y G G+ F
Sbjct: 117 KEIGTVPLLNAEEEL-----RLAKRKADGDDDAKERLIEANLRLVVSIAKRYTGRGMSFL 171
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISK 383
DL+Q GN+G+++G E+FD+T+GYK STY +WIR+S+++ +A AR I++P + I+K
Sbjct: 172 DLVQEGNLGLIKGVEKFDYTKGYKLSTYATWWIRQSVTRALADQARTIRVPVHMVETINK 231
Query: 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
+ K ++ LT G P E+A+ +S ++ + R S++ IG+
Sbjct: 232 MSKMQRKLTLELGYEPSVSELAEALDMSEDKVMEIMQIAREPASLETPIGE 282
>gi|356543070|ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 112/194 (57%), Gaps = 1/194 (0%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
+S+ ++V +LE K+ L+++ G S + A + +S L+ + RE+L S
Sbjct: 209 LSEKIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSN 268
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y LG DL+Q G +G+L+G E+FD ++G+K STYV +WIR+ +S+ +
Sbjct: 269 VRLVMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAL 328
Query: 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424
++R +++P L+ +S I+ A+ L G P IAKY +S ++R+A+E +
Sbjct: 329 VENSRTLRLPAHLHERLSLIRNAKFRL-EERGITPTIDRIAKYLNMSQKKVRNATEAISK 387
Query: 425 VGSIDQKIGDCLNA 438
+ S+D++ LN
Sbjct: 388 IISLDREAFPSLNG 401
>gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379748152|ref|YP_005338973.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379755443|ref|YP_005344115.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|379762989|ref|YP_005349386.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|387876818|ref|YP_006307122.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|406031681|ref|YP_006730572.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|443306610|ref|ZP_21036398.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
gi|378800516|gb|AFC44652.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|378805659|gb|AFC49794.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|378810931|gb|AFC55065.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|386790276|gb|AFJ36395.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|405130228|gb|AFS15483.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|442768174|gb|ELR86168.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
Length = 319
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 79 GKAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 138
Query: 353 QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412
+WIR++I++ +A +R I++P L +++K+ + ++ + + G+ D E+A +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPV 198
Query: 413 AEIRSASECLRIVGSIDQKIG 433
+I E R S+D +G
Sbjct: 199 DKINDLLEHSRDPVSLDMPVG 219
>gi|225388546|ref|ZP_03758270.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
gi|225045391|gb|EEG55637.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
Length = 381
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 87/139 (62%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 356 IRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415
IR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A+ ++ ++
Sbjct: 205 IRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKV 264
Query: 416 RSASECLRIVGSIDQKIGD 434
+ R S++ IG+
Sbjct: 265 MEIMQIAREPASLETPIGE 283
>gi|254445278|ref|ZP_05058754.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
gi|198259586|gb|EDY83894.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
Length = 576
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 92/155 (59%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++HL + E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 306 VRRHLKAAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 365
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIA 405
YKFSTY +WIR++I++ +A AR I+IP + ++K+ + +K L +G P E+A
Sbjct: 366 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVA 425
Query: 406 KYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKY 440
+ L + +++ + + S+ +GD + +
Sbjct: 426 EEMALPVERVQTIMKMAQQPISLQSPVGDGDDTNF 460
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 120/211 (56%), Gaps = 2/211 (0%)
Query: 233 GR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHL 290
GR RL E ++++ + + + E +K +L ++ + + + W A VS+ + + L
Sbjct: 140 GRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAIL 199
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
+E ++ + LV+ +A+ Y G+ DL+Q G++G+++ AE+FD +G+KFST
Sbjct: 200 HNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFST 259
Query: 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL 410
Y +W+++++++ +A H+R I++P L IS I+K + L G+ P + EIA+ +
Sbjct: 260 YATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDM 319
Query: 411 SLAEIRSASECLRIVGSIDQKIGDCLNAKYL 441
S+ ++RS + + S+++ + + +A L
Sbjct: 320 SVEKLRSVLQSAQPTLSLERPLKNDDDASQL 350
>gi|410679495|ref|YP_006931897.1| RNA polymerase sigma factor RpoD [Borrelia afzelii HLJ01]
gi|408536883|gb|AFU75014.1| RNA polymerase sigma factor RpoD [Borrelia afzelii HLJ01]
Length = 543
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 110/207 (53%), Gaps = 25/207 (12%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKAL 391
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++P + +I+++ + + L
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYL 486
Query: 392 TNSHGKYPEDIEIAKYTGLSLAEIRSA 418
GK P D E++ G L ++++
Sbjct: 487 VQVLGKDPTDEELSDRLGWELKKVKTV 513
>gi|404483026|ref|ZP_11018251.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
gi|404344116|gb|EJZ70475.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
Length = 410
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 87/140 (62%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAE 414
WIR+S+++ +A AR I++P + I+K+ K ++ LT G P E+A ++ +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELANALDMTEEK 291
Query: 415 IRSASECLRIVGSIDQKIGD 434
+ + R S++ IG+
Sbjct: 292 VMEIMQIAREPASLETPIGE 311
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,358,471,145
Number of Sequences: 23463169
Number of extensions: 234986687
Number of successful extensions: 696725
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10258
Number of HSP's successfully gapped in prelim test: 1321
Number of HSP's that attempted gapping in prelim test: 684002
Number of HSP's gapped (non-prelim): 12913
length of query: 459
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 313
effective length of database: 8,933,572,693
effective search space: 2796208252909
effective search space used: 2796208252909
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)