Query 012638
Match_columns 459
No_of_seqs 335 out of 1727
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 1.1E-36 3.8E-41 318.5 23.9 227 219-448 94-352 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 8.9E-37 3E-41 318.0 20.7 231 219-452 79-342 (423)
3 3ugo_A RNA polymerase sigma fa 100.0 7.3E-37 2.5E-41 297.7 14.8 207 219-428 7-245 (245)
4 3iyd_F RNA polymerase sigma fa 99.9 2.5E-28 8.4E-33 264.8 2.5 186 253-448 338-527 (613)
5 1l0o_C Sigma factor; bergerat 99.8 4.4E-21 1.5E-25 178.9 5.9 165 282-447 14-181 (243)
6 1rp3_A RNA polymerase sigma fa 99.8 4.2E-20 1.4E-24 172.6 10.0 145 295-443 12-161 (239)
7 1sig_A Sigma70, RNA polymerase 99.7 1.6E-17 5.5E-22 167.4 12.2 85 284-368 250-338 (339)
8 1or7_A Sigma-24, RNA polymeras 99.7 3.6E-17 1.2E-21 148.8 12.9 139 283-424 10-182 (194)
9 2q1z_A RPOE, ECF SIGE; ECF sig 99.7 7.1E-18 2.4E-22 152.5 4.3 143 281-424 11-177 (184)
10 3mzy_A RNA polymerase sigma-H 99.5 1.2E-13 4E-18 121.3 9.8 105 319-424 1-150 (164)
11 2lfw_A PHYR sigma-like domain; 99.4 2.2E-15 7.7E-20 135.1 -5.6 126 297-424 3-135 (157)
12 3n0r_A Response regulator; sig 99.4 1.5E-13 5.1E-18 135.2 5.2 128 292-424 17-153 (286)
13 2o7g_A Probable RNA polymerase 99.3 8.6E-12 2.9E-16 105.1 8.8 85 285-372 13-98 (112)
14 1h3l_A RNA polymerase sigma fa 99.2 1.8E-11 6.2E-16 98.6 6.1 77 290-368 6-83 (87)
15 3clo_A Transcriptional regulat 97.7 9.5E-09 3.3E-13 99.2 -18.8 140 284-425 85-239 (258)
16 1rp3_A RNA polymerase sigma fa 93.1 3.2 0.00011 37.5 15.6 30 395-424 200-229 (239)
17 3hug_A RNA polymerase sigma fa 92.0 0.15 5.3E-06 40.9 4.5 30 395-424 50-79 (92)
18 1l9z_H Sigma factor SIGA; heli 91.9 1.9 6.5E-05 45.0 13.7 28 397-424 394-421 (438)
19 1x3u_A Transcriptional regulat 90.9 0.42 1.4E-05 36.7 5.7 44 382-425 15-58 (79)
20 2p7v_B Sigma-70, RNA polymeras 90.7 0.36 1.2E-05 36.5 5.1 29 396-424 23-51 (68)
21 3t72_q RNA polymerase sigma fa 89.8 0.38 1.3E-05 40.1 4.9 28 397-424 38-65 (99)
22 1tty_A Sigma-A, RNA polymerase 89.2 0.56 1.9E-05 37.4 5.3 28 397-424 37-64 (87)
23 1ku3_A Sigma factor SIGA; heli 89.2 0.67 2.3E-05 35.4 5.6 28 397-424 29-56 (73)
24 1je8_A Nitrate/nitrite respons 89.0 0.14 4.7E-06 40.7 1.5 30 395-424 33-62 (82)
25 2o8x_A Probable RNA polymerase 88.8 0.68 2.3E-05 34.4 5.3 30 395-424 28-57 (70)
26 3c57_A Two component transcrip 87.1 0.32 1.1E-05 39.6 2.6 29 396-424 40-68 (95)
27 1tc3_C Protein (TC3 transposas 86.3 1.1 3.8E-05 30.3 4.8 27 397-423 20-46 (51)
28 2jpc_A SSRB; DNA binding prote 86.2 0.57 2E-05 34.2 3.4 29 396-424 11-39 (61)
29 2jt1_A PEFI protein; solution 85.0 1.3 4.6E-05 35.2 5.2 27 396-422 22-48 (77)
30 1xsv_A Hypothetical UPF0122 pr 84.4 1.4 4.7E-05 37.2 5.4 30 395-424 38-67 (113)
31 2x48_A CAG38821; archeal virus 83.4 1.4 4.9E-05 31.5 4.4 25 397-421 30-54 (55)
32 1fse_A GERE; helix-turn-helix 82.9 1.9 6.4E-05 32.3 5.1 29 396-424 24-52 (74)
33 3ulq_B Transcriptional regulat 81.9 1.4 4.8E-05 35.6 4.3 30 396-425 42-71 (90)
34 2rnj_A Response regulator prot 81.6 0.77 2.6E-05 36.7 2.6 30 396-425 42-71 (91)
35 2a6h_F RNA polymerase sigma fa 81.0 8.4 0.00029 39.6 10.8 28 397-424 379-406 (423)
36 1s7o_A Hypothetical UPF0122 pr 79.9 2 6.7E-05 36.4 4.6 29 396-424 36-64 (113)
37 1p4w_A RCSB; solution structur 77.3 1.9 6.4E-05 35.6 3.7 29 397-425 48-76 (99)
38 3k2z_A LEXA repressor; winged 74.5 5.8 0.0002 36.0 6.5 42 381-422 7-48 (196)
39 1l0o_C Sigma factor; bergerat 71.6 0.81 2.8E-05 41.5 0.0 29 396-424 212-240 (243)
40 1l3l_A Transcriptional activat 70.1 4.7 0.00016 37.4 4.9 29 396-424 186-214 (234)
41 3mn2_A Probable ARAC family tr 68.4 11 0.00036 30.5 6.2 40 383-422 3-42 (108)
42 2heo_A Z-DNA binding protein 1 67.6 5.5 0.00019 30.2 4.0 29 395-423 22-50 (67)
43 2q0o_A Probable transcriptiona 66.5 4.9 0.00017 37.3 4.2 28 397-424 189-216 (236)
44 2k9s_A Arabinose operon regula 64.7 12 0.00042 30.1 5.9 39 383-421 4-43 (107)
45 3szt_A QCSR, quorum-sensing co 63.8 5.9 0.0002 37.0 4.2 30 396-425 188-217 (237)
46 3oio_A Transcriptional regulat 63.8 11 0.00036 30.8 5.4 40 383-422 8-47 (113)
47 3oou_A LIN2118 protein; protei 63.0 14 0.00049 29.7 6.0 39 384-422 7-45 (108)
48 3lsg_A Two-component response 61.9 17 0.0006 28.9 6.3 38 385-422 5-43 (103)
49 1zx4_A P1 PARB, plasmid partit 61.8 6.4 0.00022 36.6 4.0 27 397-423 23-49 (192)
50 1jko_C HIN recombinase, DNA-in 59.8 6 0.0002 26.9 2.7 25 398-422 21-45 (52)
51 1qbj_A Protein (double-strande 59.6 17 0.00058 28.9 5.7 28 396-423 25-52 (81)
52 2w7n_A TRFB transcriptional re 58.0 15 0.00053 30.6 5.3 30 395-424 31-60 (101)
53 3oou_A LIN2118 protein; protei 56.6 26 0.00088 28.2 6.5 77 311-417 13-90 (108)
54 3qp6_A CVIR transcriptional re 56.4 8.3 0.00028 36.8 3.9 29 397-425 211-239 (265)
55 3oio_A Transcriptional regulat 55.4 28 0.00096 28.2 6.6 55 310-364 14-68 (113)
56 1jhg_A Trp operon repressor; c 54.4 15 0.00052 30.7 4.7 23 398-420 58-80 (101)
57 1uxc_A FRUR (1-57), fructose r 54.3 11 0.00036 28.8 3.4 24 399-422 1-24 (65)
58 1jhf_A LEXA repressor; LEXA SO 53.4 22 0.00075 31.9 6.1 38 384-421 11-49 (202)
59 3bpv_A Transcriptional regulat 52.9 55 0.0019 26.5 8.1 26 397-422 42-67 (138)
60 3mkl_A HTH-type transcriptiona 51.9 21 0.0007 29.4 5.2 39 384-422 9-47 (120)
61 1qgp_A Protein (double strande 51.3 27 0.00091 27.3 5.5 27 397-423 30-56 (77)
62 3mkl_A HTH-type transcriptiona 51.0 28 0.00095 28.6 5.9 54 310-364 14-67 (120)
63 3kz3_A Repressor protein CI; f 50.7 32 0.0011 25.9 5.8 24 397-420 24-47 (80)
64 1oyi_A Double-stranded RNA-bin 50.0 16 0.00054 29.5 4.0 24 399-422 31-54 (82)
65 1d5y_A ROB transcription facto 49.6 30 0.001 32.4 6.6 34 255-288 5-38 (292)
66 1jgs_A Multiple antibiotic res 48.8 48 0.0016 27.0 7.1 65 349-422 8-72 (138)
67 2htj_A P fimbrial regulatory p 48.5 25 0.00087 26.9 4.9 27 397-423 13-39 (81)
68 1bl0_A Protein (multiple antib 48.4 21 0.00072 29.8 4.8 39 383-421 12-50 (129)
69 1y7y_A C.AHDI; helix-turn-heli 47.5 45 0.0015 24.1 6.0 24 397-420 25-48 (74)
70 3mky_B Protein SOPB; partition 46.4 31 0.0011 32.1 5.8 47 374-425 23-69 (189)
71 3nrv_A Putative transcriptiona 46.1 46 0.0016 27.5 6.6 74 337-422 4-78 (148)
72 3f6w_A XRE-family like protein 46.1 46 0.0016 24.9 6.1 31 398-429 27-57 (83)
73 2fmy_A COOA, carbon monoxide o 45.7 62 0.0021 28.5 7.7 26 398-423 167-192 (220)
74 1lmb_3 Protein (lambda repress 45.3 42 0.0014 25.7 5.8 47 380-429 14-60 (92)
75 2fa5_A Transcriptional regulat 45.0 61 0.0021 27.2 7.3 26 397-422 62-87 (162)
76 1xn7_A Hypothetical protein YH 44.9 38 0.0013 26.7 5.4 26 397-422 15-40 (78)
77 3klo_A Transcriptional regulat 44.5 38 0.0013 30.1 6.2 40 389-428 165-204 (225)
78 1lj9_A Transcriptional regulat 44.2 86 0.0029 25.6 8.0 63 351-422 5-67 (144)
79 2b5a_A C.BCLI; helix-turn-heli 44.1 53 0.0018 23.9 6.0 24 397-420 22-45 (77)
80 3dv8_A Transcriptional regulat 43.4 63 0.0021 28.2 7.4 26 398-423 169-194 (220)
81 3oop_A LIN2960 protein; protei 43.2 71 0.0024 26.2 7.3 64 350-422 12-75 (143)
82 2qwt_A Transcriptional regulat 43.0 45 0.0015 28.8 6.2 39 380-418 14-52 (196)
83 2pex_A Transcriptional regulat 43.0 70 0.0024 26.6 7.3 65 349-422 21-85 (153)
84 2fbh_A Transcriptional regulat 42.8 1.1E+02 0.0038 24.8 8.5 27 396-422 50-76 (146)
85 3fm5_A Transcriptional regulat 42.6 75 0.0026 26.4 7.4 66 349-422 13-78 (150)
86 3lsg_A Two-component response 42.5 52 0.0018 26.0 6.1 74 315-418 15-89 (103)
87 3s8q_A R-M controller protein; 42.4 56 0.0019 24.4 6.0 33 397-430 23-55 (82)
88 3bro_A Transcriptional regulat 42.0 82 0.0028 25.5 7.5 25 398-422 50-74 (141)
89 3tqn_A Transcriptional regulat 41.6 21 0.0007 29.5 3.6 26 398-423 33-58 (113)
90 2k9s_A Arabinose operon regula 41.1 51 0.0017 26.3 5.9 64 318-411 19-82 (107)
91 3e97_A Transcriptional regulat 40.9 42 0.0014 29.8 5.9 26 398-423 175-200 (231)
92 3qkx_A Uncharacterized HTH-typ 40.9 63 0.0021 26.9 6.7 46 373-418 2-48 (188)
93 3kor_A Possible Trp repressor; 40.9 39 0.0013 29.2 5.2 28 396-423 73-100 (119)
94 2a6c_A Helix-turn-helix motif; 40.7 67 0.0023 24.4 6.3 34 397-430 30-63 (83)
95 4ham_A LMO2241 protein; struct 40.5 21 0.00073 30.3 3.6 27 397-423 37-63 (134)
96 2kpj_A SOS-response transcript 40.1 92 0.0032 24.1 7.2 25 396-420 20-44 (94)
97 1y6u_A XIS, excisionase from t 40.1 19 0.00063 28.0 2.8 26 397-422 15-40 (70)
98 3iyd_F RNA polymerase sigma fa 40.0 11 0.00037 40.6 2.0 28 397-424 569-596 (613)
99 1zug_A Phage 434 CRO protein; 39.6 11 0.00037 27.4 1.4 25 397-421 15-39 (71)
100 2xi8_A Putative transcription 39.5 25 0.00085 24.9 3.4 24 397-420 13-36 (66)
101 2rdp_A Putative transcriptiona 39.4 77 0.0026 26.1 7.0 25 398-422 56-80 (150)
102 1bl0_A Protein (multiple antib 39.2 42 0.0014 27.9 5.3 50 315-364 23-72 (129)
103 3eco_A MEPR; mutlidrug efflux 39.0 62 0.0021 26.4 6.2 26 397-422 46-71 (139)
104 2l0k_A Stage III sporulation p 38.8 41 0.0014 27.5 4.9 23 399-421 21-43 (93)
105 3i4p_A Transcriptional regulat 38.7 41 0.0014 29.3 5.3 24 399-422 18-41 (162)
106 2nnn_A Probable transcriptiona 38.5 97 0.0033 25.0 7.4 64 349-422 13-76 (140)
107 3bd1_A CRO protein; transcript 38.5 38 0.0013 25.4 4.5 24 400-423 13-36 (79)
108 2q24_A Putative TETR family tr 38.2 53 0.0018 28.0 5.9 38 381-418 17-54 (194)
109 3b81_A Transcriptional regulat 38.2 56 0.0019 27.7 6.0 40 378-417 10-50 (203)
110 3e6c_C CPRK, cyclic nucleotide 38.2 74 0.0025 28.7 7.2 26 398-423 177-202 (250)
111 2k9q_A Uncharacterized protein 38.1 48 0.0017 24.6 5.0 23 398-420 15-37 (77)
112 2fq4_A Transcriptional regulat 38.0 59 0.002 27.8 6.2 40 379-418 12-52 (192)
113 3s2w_A Transcriptional regulat 38.0 1E+02 0.0035 25.8 7.7 66 348-422 23-88 (159)
114 2vn2_A DNAD, chromosome replic 38.0 20 0.00067 30.4 3.0 26 397-422 50-75 (128)
115 2b0l_A GTP-sensing transcripti 38.0 21 0.00073 29.3 3.1 27 397-423 42-68 (102)
116 2r1j_L Repressor protein C2; p 37.9 52 0.0018 23.2 5.0 24 398-421 18-41 (68)
117 2wiu_B HTH-type transcriptiona 37.8 72 0.0024 24.0 6.0 25 397-421 24-48 (88)
118 2cfx_A HTH-type transcriptiona 37.7 56 0.0019 27.7 5.9 26 397-422 18-43 (144)
119 1q1h_A TFE, transcription fact 37.7 23 0.00078 28.6 3.2 29 395-423 30-58 (110)
120 2e1c_A Putative HTH-type trans 37.6 28 0.00095 31.0 4.0 25 398-422 41-65 (171)
121 3anp_C Transcriptional repress 37.5 62 0.0021 27.8 6.3 40 379-418 9-49 (204)
122 3lhq_A Acrab operon repressor 37.5 65 0.0022 27.4 6.4 40 379-418 14-54 (220)
123 1r69_A Repressor protein CI; g 37.4 28 0.00095 24.9 3.4 25 397-421 13-37 (69)
124 2ewt_A BLDD, putative DNA-bind 37.0 1E+02 0.0034 22.0 6.5 25 397-421 20-46 (71)
125 1pb6_A Hypothetical transcript 36.9 69 0.0024 27.3 6.5 41 378-418 17-58 (212)
126 2v57_A TETR family transcripti 36.8 53 0.0018 27.7 5.6 39 379-418 14-52 (190)
127 3neu_A LIN1836 protein; struct 36.7 27 0.00091 29.4 3.6 27 397-423 36-62 (125)
128 3f1b_A TETR-like transcription 36.7 65 0.0022 27.2 6.2 40 379-418 14-54 (203)
129 3b7h_A Prophage LP1 protein 11 36.5 61 0.0021 23.7 5.3 34 397-430 19-52 (78)
130 3lwj_A Putative TETR-family tr 36.5 71 0.0024 27.0 6.4 41 378-418 11-52 (202)
131 3knw_A Putative transcriptiona 36.4 65 0.0022 27.5 6.2 40 379-418 14-54 (212)
132 3ppb_A Putative TETR family tr 36.4 64 0.0022 26.9 6.1 39 380-418 10-49 (195)
133 2ef8_A C.ECOT38IS, putative tr 36.4 80 0.0027 23.4 6.0 24 397-420 22-45 (84)
134 3by6_A Predicted transcription 36.3 27 0.00093 29.5 3.6 27 397-423 34-60 (126)
135 1adr_A P22 C2 repressor; trans 36.3 55 0.0019 23.7 5.0 23 398-420 18-40 (76)
136 3g5g_A Regulatory protein; tra 36.0 76 0.0026 25.3 6.1 44 384-430 29-72 (99)
137 2rek_A Putative TETR-family tr 36.0 48 0.0016 28.3 5.2 39 380-418 17-55 (199)
138 3kkc_A TETR family transcripti 36.0 44 0.0015 27.8 4.9 39 379-417 12-51 (177)
139 3f2g_A Alkylmercury lyase; MER 35.9 42 0.0014 31.8 5.1 29 395-423 33-61 (220)
140 2f07_A YVDT; helix-turn-helix, 35.8 53 0.0018 28.3 5.5 40 379-418 10-50 (197)
141 3cjn_A Transcriptional regulat 35.8 70 0.0024 26.9 6.2 26 397-422 65-90 (162)
142 3vpr_A Transcriptional regulat 35.7 38 0.0013 28.8 4.5 37 382-418 6-43 (190)
143 1yio_A Response regulatory pro 35.7 42 0.0014 29.1 4.9 30 396-425 155-184 (208)
144 2eh3_A Transcriptional regulat 35.7 55 0.0019 27.6 5.5 37 382-418 5-42 (179)
145 2g7s_A Transcriptional regulat 35.6 57 0.002 27.2 5.6 40 379-418 8-48 (194)
146 3t76_A VANU, transcriptional r 35.5 52 0.0018 26.1 5.0 32 397-430 36-67 (88)
147 3vp5_A Transcriptional regulat 35.4 59 0.002 27.9 5.8 39 379-417 12-51 (189)
148 2wus_R RODZ, putative uncharac 35.4 59 0.002 27.0 5.5 25 396-420 18-42 (112)
149 1a04_A Nitrate/nitrite respons 35.4 33 0.0011 30.1 4.2 29 396-424 167-195 (215)
150 2a61_A Transcriptional regulat 35.4 76 0.0026 25.9 6.2 25 398-422 47-71 (145)
151 2l8n_A Transcriptional repress 35.4 19 0.00065 27.5 2.2 25 397-421 8-32 (67)
152 3gzi_A Transcriptional regulat 35.3 56 0.0019 28.1 5.6 41 378-418 16-57 (218)
153 3on4_A Transcriptional regulat 35.2 44 0.0015 28.0 4.8 40 379-418 10-50 (191)
154 3qbm_A TETR transcriptional re 35.1 60 0.002 27.3 5.7 37 379-415 7-44 (199)
155 3vib_A MTRR; helix-turn-helix 35.1 68 0.0023 27.7 6.1 40 379-418 10-50 (210)
156 2qtq_A Transcriptional regulat 35.1 60 0.0021 27.6 5.8 45 374-418 11-56 (213)
157 2ofy_A Putative XRE-family tra 35.1 65 0.0022 24.3 5.4 31 400-430 29-59 (86)
158 2y75_A HTH-type transcriptiona 35.0 50 0.0017 27.4 5.0 28 396-423 24-51 (129)
159 2dbb_A Putative HTH-type trans 35.0 65 0.0022 27.3 5.9 26 397-422 22-47 (151)
160 3qq6_A HTH-type transcriptiona 35.0 32 0.0011 26.1 3.5 34 397-430 22-55 (78)
161 2p5v_A Transcriptional regulat 34.9 62 0.0021 27.9 5.8 25 398-422 24-48 (162)
162 3gbg_A TCP pilus virulence reg 34.9 1.1E+02 0.0038 28.2 7.9 49 315-364 181-229 (276)
163 2ek5_A Predicted transcription 34.9 30 0.001 29.4 3.6 27 397-423 27-53 (129)
164 3bhq_A Transcriptional regulat 34.6 70 0.0024 27.7 6.2 39 380-418 13-52 (211)
165 2elh_A CG11849-PA, LD40883P; s 34.3 39 0.0013 26.4 4.0 25 398-422 38-62 (87)
166 3cwr_A Transcriptional regulat 34.1 61 0.0021 27.4 5.6 41 378-418 16-57 (208)
167 1rkt_A Protein YFIR; transcrip 34.0 60 0.0021 28.0 5.6 38 380-417 13-51 (205)
168 1v4r_A Transcriptional repress 33.9 17 0.00057 29.3 1.7 27 397-423 34-60 (102)
169 3egq_A TETR family transcripti 33.9 46 0.0016 27.6 4.7 40 379-418 4-44 (170)
170 3deu_A Transcriptional regulat 33.8 91 0.0031 26.7 6.7 66 349-422 27-92 (166)
171 2k02_A Ferrous iron transport 33.5 43 0.0015 27.1 4.2 26 397-422 15-40 (87)
172 1xmk_A Double-stranded RNA-spe 33.4 55 0.0019 26.0 4.7 25 398-422 25-50 (79)
173 2ras_A Transcriptional regulat 33.2 63 0.0022 27.8 5.6 39 379-417 11-50 (212)
174 2gau_A Transcriptional regulat 33.1 1.3E+02 0.0045 26.5 7.9 26 398-423 180-205 (232)
175 2fu4_A Ferric uptake regulatio 32.9 52 0.0018 25.0 4.5 27 397-423 32-63 (83)
176 2w48_A Sorbitol operon regulat 32.7 57 0.0019 31.6 5.7 30 395-424 18-47 (315)
177 3col_A Putative transcription 32.6 42 0.0014 28.2 4.2 44 372-415 3-47 (196)
178 3kz9_A SMCR; transcriptional r 32.6 84 0.0029 26.4 6.2 40 379-418 17-57 (206)
179 3b02_A Transcriptional regulat 32.6 53 0.0018 28.5 5.0 25 399-423 140-164 (195)
180 1j5y_A Transcriptional regulat 32.5 85 0.0029 27.9 6.5 28 396-423 34-61 (187)
181 3k0l_A Repressor protein; heli 32.5 91 0.0031 26.3 6.4 66 348-422 19-84 (162)
182 3dew_A Transcriptional regulat 32.5 63 0.0022 27.2 5.4 39 380-418 9-48 (206)
183 3bs3_A Putative DNA-binding pr 32.5 37 0.0013 24.8 3.4 24 397-420 22-45 (76)
184 4hbl_A Transcriptional regulat 32.4 91 0.0031 25.9 6.3 26 397-422 54-79 (149)
185 2wui_A MEXZ, transcriptional r 32.4 81 0.0028 27.3 6.2 39 380-418 12-51 (210)
186 3bja_A Transcriptional regulat 32.4 65 0.0022 26.0 5.3 26 397-422 46-71 (139)
187 2g7g_A RHA04620, putative tran 32.4 54 0.0018 29.2 5.1 36 381-417 13-48 (213)
188 3c3w_A Two component transcrip 32.4 43 0.0015 30.0 4.4 30 397-426 163-192 (225)
189 3eus_A DNA-binding protein; st 32.3 99 0.0034 23.6 6.1 33 397-430 26-58 (86)
190 3rd3_A Probable transcriptiona 32.3 54 0.0019 27.5 4.9 44 372-415 3-47 (197)
191 3crj_A Transcription regulator 32.2 75 0.0026 27.4 6.0 40 378-417 13-53 (199)
192 3dpj_A Transcription regulator 32.2 85 0.0029 26.4 6.2 40 379-418 8-48 (194)
193 2hku_A A putative transcriptio 32.1 76 0.0026 27.5 6.0 39 380-418 21-59 (215)
194 2zcm_A Biofilm operon icaabcd 32.1 62 0.0021 27.4 5.3 36 383-418 11-47 (192)
195 3bni_A Putative TETR-family tr 32.0 87 0.003 27.6 6.5 50 369-418 33-83 (229)
196 1u78_A TC3 transposase, transp 31.9 55 0.0019 26.8 4.8 26 398-423 22-47 (141)
197 3dkw_A DNR protein; CRP-FNR, H 31.9 1.1E+02 0.0036 26.8 7.0 26 398-423 178-203 (227)
198 2qww_A Transcriptional regulat 31.9 87 0.003 25.9 6.1 25 398-422 55-79 (154)
199 2jt1_A PEFI protein; solution 31.9 65 0.0022 25.3 4.9 30 258-287 13-42 (77)
200 2nx4_A Transcriptional regulat 31.7 85 0.0029 26.8 6.2 39 380-418 11-50 (194)
201 4ghj_A Probable transcriptiona 31.7 1E+02 0.0034 25.1 6.2 24 397-420 48-71 (101)
202 3mn2_A Probable ARAC family tr 31.6 81 0.0028 25.0 5.6 38 255-292 4-41 (108)
203 1pdn_C Protein (PRD paired); p 31.6 55 0.0019 26.1 4.6 26 398-423 33-58 (128)
204 3hsr_A HTH-type transcriptiona 31.5 53 0.0018 27.1 4.6 26 397-422 49-74 (140)
205 1j9i_A GPNU1 DBD;, terminase s 31.3 27 0.00091 26.1 2.4 25 399-423 3-27 (68)
206 2ia0_A Putative HTH-type trans 31.1 76 0.0026 28.0 5.8 25 398-422 31-55 (171)
207 3d0s_A Transcriptional regulat 31.1 90 0.0031 27.5 6.4 26 398-423 177-202 (227)
208 2zb9_A Putative transcriptiona 31.1 71 0.0024 27.6 5.6 40 379-418 23-63 (214)
209 3ryp_A Catabolite gene activat 31.0 77 0.0026 27.4 5.8 25 399-423 168-192 (210)
210 1sfu_A 34L protein; protein/Z- 30.9 39 0.0014 26.8 3.4 43 379-423 12-54 (75)
211 3omt_A Uncharacterized protein 30.9 40 0.0014 24.8 3.3 32 398-430 21-52 (73)
212 3bj6_A Transcriptional regulat 30.8 86 0.0029 25.8 5.9 25 398-422 54-78 (152)
213 2o7t_A Transcriptional regulat 30.8 75 0.0026 27.1 5.7 40 379-418 8-48 (199)
214 3cdl_A Transcriptional regulat 30.6 75 0.0026 27.4 5.7 38 380-417 10-48 (203)
215 2cyy_A Putative HTH-type trans 30.5 84 0.0029 26.7 5.9 25 398-422 21-45 (151)
216 3knw_A Putative transcriptiona 30.5 2.4E+02 0.0083 23.7 9.9 76 266-341 30-107 (212)
217 2v79_A DNA replication protein 30.0 38 0.0013 29.3 3.5 35 397-431 50-86 (135)
218 3e6m_A MARR family transcripti 29.8 90 0.0031 26.3 5.9 25 398-422 67-91 (161)
219 2cg4_A Regulatory protein ASNC 29.8 85 0.0029 26.6 5.8 26 397-422 21-46 (152)
220 2xdn_A HTH-type transcriptiona 29.6 67 0.0023 27.7 5.2 40 379-418 11-51 (210)
221 2k9l_A RNA polymerase sigma fa 29.2 41 0.0014 26.2 3.2 26 398-423 48-73 (76)
222 3cdh_A Transcriptional regulat 29.2 93 0.0032 25.8 5.9 25 398-422 57-81 (155)
223 2d6y_A Putative TETR family re 29.2 91 0.0031 26.9 6.0 38 381-418 10-48 (202)
224 2o38_A Hypothetical protein; a 29.2 86 0.0029 26.2 5.5 34 397-430 52-85 (120)
225 2hr3_A Probable transcriptiona 29.1 1.8E+02 0.006 23.7 7.5 26 397-422 49-74 (147)
226 2p5k_A Arginine repressor; DNA 29.1 1.1E+02 0.0037 21.7 5.5 27 396-422 17-48 (64)
227 3he0_A Transcriptional regulat 29.0 75 0.0026 26.7 5.3 35 381-415 13-48 (196)
228 3vk0_A NHTF, transcriptional r 29.0 1E+02 0.0035 24.9 5.9 24 397-420 33-56 (114)
229 3f0c_A TETR-molecule A, transc 28.9 94 0.0032 26.6 6.0 39 380-418 12-51 (216)
230 2phc_B Uncharacterized protein 28.9 80 0.0027 29.8 5.8 42 365-422 80-121 (225)
231 2rae_A Transcriptional regulat 28.8 95 0.0032 26.4 6.0 40 379-418 17-57 (207)
232 1s3j_A YUSO protein; structura 28.8 75 0.0026 26.3 5.1 25 398-422 51-75 (155)
233 2zcx_A SCO7815, TETR-family tr 28.7 1.1E+02 0.0037 27.4 6.5 42 377-418 21-63 (231)
234 2vt3_A REX, redox-sensing tran 28.3 86 0.003 29.1 5.9 51 372-422 7-57 (215)
235 1ft9_A Carbon monoxide oxidati 28.3 1.2E+02 0.0041 26.6 6.7 25 399-423 164-188 (222)
236 2w25_A Probable transcriptiona 28.3 51 0.0017 28.0 4.0 25 398-422 21-45 (150)
237 2lnb_A Z-DNA-binding protein 1 28.3 92 0.0032 25.0 5.1 35 390-424 26-60 (80)
238 2dg7_A Putative transcriptiona 28.2 80 0.0027 26.8 5.3 39 380-418 8-47 (195)
239 1z4h_A TORI, TOR inhibition pr 28.0 47 0.0016 24.7 3.3 28 398-425 10-37 (66)
240 2fjr_A Repressor protein CI; g 27.9 83 0.0028 27.4 5.5 22 400-421 22-43 (189)
241 2dt5_A AT-rich DNA-binding pro 27.8 78 0.0027 29.3 5.5 50 373-422 3-52 (211)
242 3pas_A TETR family transcripti 27.8 52 0.0018 27.5 4.0 40 379-418 8-48 (195)
243 2ahq_A Sigma-54, RNA polymeras 27.8 1.2E+02 0.0041 24.0 5.7 43 383-425 20-69 (76)
244 1neq_A DNA-binding protein NER 27.5 13 0.00046 28.7 0.1 50 396-447 20-69 (74)
245 3c2b_A Transcriptional regulat 27.5 89 0.003 26.9 5.6 40 379-418 15-55 (221)
246 1zk8_A Transcriptional regulat 27.4 68 0.0023 26.8 4.7 37 381-417 10-47 (183)
247 3fmy_A HTH-type transcriptiona 27.3 51 0.0017 24.6 3.4 24 397-420 23-46 (73)
248 1vi0_A Transcriptional regulat 27.3 83 0.0028 27.3 5.4 38 381-418 10-48 (206)
249 3la7_A Global nitrogen regulat 27.2 1.4E+02 0.0047 26.9 7.0 26 398-423 193-218 (243)
250 3frw_A Putative Trp repressor 27.1 72 0.0025 27.0 4.5 29 395-423 55-83 (107)
251 1ui5_A A-factor receptor homol 27.1 92 0.0032 27.2 5.7 39 380-418 10-49 (215)
252 3f8m_A GNTR-family protein tra 26.9 70 0.0024 29.9 5.1 26 397-422 35-60 (248)
253 1on2_A Transcriptional regulat 26.6 1.2E+02 0.004 25.1 6.0 26 397-422 21-46 (142)
254 2d1h_A ST1889, 109AA long hypo 26.6 42 0.0014 26.0 3.0 27 396-422 34-60 (109)
255 2fd5_A Transcriptional regulat 26.5 61 0.0021 27.1 4.2 38 380-417 8-46 (180)
256 3r0a_A Putative transcriptiona 26.4 83 0.0029 26.1 4.9 25 399-423 43-67 (123)
257 3mvp_A TETR/ACRR transcription 26.4 96 0.0033 26.4 5.5 42 377-418 24-66 (217)
258 1sgm_A Putative HTH-type trans 26.3 59 0.002 27.1 4.1 36 380-415 7-43 (191)
259 2yve_A Transcriptional regulat 25.8 1.2E+02 0.0042 25.6 6.1 37 382-418 7-44 (185)
260 2id3_A Putative transcriptiona 25.8 96 0.0033 27.3 5.6 40 379-418 40-80 (225)
261 2oi8_A Putative regulatory pro 25.7 1.2E+02 0.0041 26.7 6.2 40 378-417 15-55 (216)
262 1z91_A Organic hydroperoxide r 25.7 58 0.002 26.8 3.8 25 398-422 54-78 (147)
263 2ict_A Antitoxin HIGA; helix-t 25.7 1.1E+02 0.0039 23.4 5.4 24 398-421 21-44 (94)
264 3gbg_A TCP pilus virulence reg 25.7 95 0.0032 28.6 5.7 37 384-420 171-207 (276)
265 1x57_A Endothelial differentia 25.6 60 0.0021 24.9 3.7 25 396-420 24-48 (91)
266 2bv6_A MGRA, HTH-type transcri 25.6 83 0.0029 25.7 4.8 66 348-422 9-75 (142)
267 1i1g_A Transcriptional regulat 25.5 1.1E+02 0.0039 25.2 5.7 25 398-422 18-42 (141)
268 1rr7_A Middle operon regulator 25.5 1.6E+02 0.0053 25.2 6.6 52 369-424 67-118 (129)
269 3ccy_A Putative TETR-family tr 25.4 52 0.0018 28.3 3.6 38 380-417 15-53 (203)
270 3cjd_A Transcriptional regulat 25.3 1.1E+02 0.0036 26.5 5.7 41 378-418 11-52 (198)
271 1u8b_A ADA polyprotein; protei 25.2 87 0.003 26.0 4.9 38 383-422 80-117 (133)
272 2hyt_A TETR-family transcripti 25.2 91 0.0031 26.7 5.2 40 379-418 12-52 (197)
273 1t33_A Putative transcriptiona 25.1 89 0.003 27.0 5.1 38 380-418 13-51 (224)
274 2kfs_A Conserved hypothetical 25.1 41 0.0014 30.0 2.8 26 398-423 31-56 (148)
275 2qib_A TETR-family transcripti 25.1 1.1E+02 0.0039 26.9 6.0 41 378-418 12-53 (231)
276 3geu_A Intercellular adhesion 25.1 54 0.0018 27.7 3.6 37 381-417 5-42 (189)
277 3rh2_A Hypothetical TETR-like 25.0 81 0.0028 27.1 4.8 37 382-418 6-43 (212)
278 3loc_A HTH-type transcriptiona 25.0 62 0.0021 27.5 4.0 40 379-418 18-58 (212)
279 2i10_A Putative TETR transcrip 24.9 1.1E+02 0.0037 26.4 5.7 37 382-418 14-51 (202)
280 3on2_A Probable transcriptiona 24.8 40 0.0014 28.3 2.7 38 379-416 12-50 (199)
281 2w53_A Repressor, SMet; antibi 24.8 95 0.0033 26.9 5.3 37 381-417 13-50 (219)
282 3bjb_A Probable transcriptiona 24.7 1.1E+02 0.0037 26.6 5.7 40 379-418 22-62 (207)
283 2np5_A Transcriptional regulat 24.7 1E+02 0.0035 26.6 5.4 38 381-418 11-49 (203)
284 2dg8_A Putative TETR-family tr 24.6 75 0.0026 27.0 4.5 39 380-418 10-49 (193)
285 3p7n_A Sensor histidine kinase 24.6 45 0.0015 30.0 3.2 28 397-424 212-239 (258)
286 2hyj_A Putative TETR-family tr 24.6 90 0.0031 26.9 5.1 39 379-417 12-51 (200)
287 3q0w_A HTH-type transcriptiona 24.6 1.1E+02 0.0037 27.1 5.7 40 379-418 44-84 (236)
288 2of7_A Putative TETR-family tr 24.5 1.2E+02 0.0042 27.4 6.1 40 379-418 48-88 (260)
289 2bgc_A PRFA; bacterial infecti 24.5 1.3E+02 0.0045 26.8 6.3 26 398-423 169-195 (238)
290 2fbi_A Probable transcriptiona 24.4 70 0.0024 25.9 4.1 25 398-422 50-74 (142)
291 2fbq_A Probable transcriptiona 24.3 1.3E+02 0.0044 26.7 6.1 39 380-418 8-47 (235)
292 2qko_A Possible transcriptiona 24.3 64 0.0022 28.0 4.0 40 379-418 28-68 (215)
293 2jj7_A Hemolysin II regulatory 24.2 67 0.0023 27.0 4.0 39 380-418 8-47 (186)
294 3eup_A Transcriptional regulat 24.2 56 0.0019 27.6 3.5 37 379-415 11-48 (204)
295 3kjx_A Transcriptional regulat 24.1 38 0.0013 32.3 2.6 26 396-421 8-33 (344)
296 1r71_A Transcriptional repress 24.1 1.3E+02 0.0045 27.2 6.1 27 398-424 52-78 (178)
297 3ni7_A Bacterial regulatory pr 23.9 1.4E+02 0.0047 26.4 6.3 39 380-418 8-47 (213)
298 3kp7_A Transcriptional regulat 23.8 94 0.0032 25.8 4.8 26 397-422 50-75 (151)
299 3fx3_A Cyclic nucleotide-bindi 23.8 1.4E+02 0.0048 26.4 6.3 26 399-424 179-204 (237)
300 2oer_A Probable transcriptiona 23.8 90 0.0031 27.1 4.9 40 379-418 24-64 (214)
301 2guh_A Putative TETR-family tr 23.8 1.3E+02 0.0043 26.5 6.0 41 378-418 38-79 (214)
302 1k78_A Paired box protein PAX5 23.7 86 0.0029 26.3 4.6 26 398-423 48-73 (149)
303 3op9_A PLI0006 protein; struct 23.7 1.2E+02 0.0041 24.2 5.3 23 398-420 22-44 (114)
304 1hw1_A FADR, fatty acid metabo 23.7 55 0.0019 29.8 3.6 26 397-422 30-55 (239)
305 3h5t_A Transcriptional regulat 23.5 44 0.0015 32.1 3.0 26 396-421 7-32 (366)
306 1d5y_A ROB transcription facto 23.4 57 0.002 30.4 3.7 38 383-420 4-41 (292)
307 3kcc_A Catabolite gene activat 23.4 1.4E+02 0.0047 27.2 6.3 26 399-424 218-243 (260)
308 2oz6_A Virulence factor regula 23.3 49 0.0017 28.6 3.0 26 398-423 164-189 (207)
309 3v6g_A Probable transcriptiona 23.3 1.1E+02 0.0037 26.9 5.4 39 380-418 15-54 (208)
310 2gxg_A 146AA long hypothetical 23.1 2.1E+02 0.007 23.2 6.8 27 396-422 48-74 (146)
311 2pn6_A ST1022, 150AA long hypo 23.0 1.1E+02 0.0039 25.6 5.2 25 398-422 17-41 (150)
312 3keo_A Redox-sensing transcrip 22.9 75 0.0026 29.7 4.3 51 372-422 6-56 (212)
313 3nnr_A Transcriptional regulat 22.7 1.1E+02 0.0039 26.6 5.4 38 381-418 7-45 (228)
314 1ylf_A RRF2 family protein; st 22.6 65 0.0022 27.7 3.6 28 396-423 28-55 (149)
315 2gfn_A HTH-type transcriptiona 22.6 1.2E+02 0.0041 26.4 5.5 40 379-418 9-49 (209)
316 1ais_B TFB TFIIB, protein (tra 22.5 4E+02 0.014 23.4 10.8 31 394-424 161-191 (200)
317 2iu5_A DHAS, YCEG, HTH-type dh 22.4 56 0.0019 27.9 3.2 38 380-417 14-52 (195)
318 1sig_A Sigma70, RNA polymerase 22.3 29 0.00098 34.1 1.4 19 236-254 1-19 (339)
319 4aci_A HTH-type transcriptiona 22.3 59 0.002 27.4 3.3 39 380-418 15-54 (191)
320 3ljl_A Transcriptional regulat 22.3 82 0.0028 26.2 4.2 40 379-418 14-54 (156)
321 3bdd_A Regulatory protein MARR 22.3 2.3E+02 0.0077 22.7 6.9 25 398-422 45-69 (142)
322 1rzs_A Antirepressor, regulato 22.2 58 0.002 23.8 2.8 21 399-419 11-31 (61)
323 3trb_A Virulence-associated pr 22.1 65 0.0022 26.2 3.3 34 396-430 25-58 (104)
324 3e7q_A Transcriptional regulat 22.1 78 0.0027 26.9 4.1 40 379-418 14-54 (215)
325 3f52_A CLP gene regulator (CLG 21.9 1.6E+02 0.0054 23.5 5.8 23 398-420 41-63 (117)
326 1sfx_A Conserved hypothetical 21.9 72 0.0025 24.5 3.5 25 398-422 34-58 (109)
327 3nxc_A HTH-type protein SLMA; 21.9 72 0.0025 27.2 3.8 32 384-415 30-62 (212)
328 2hsg_A Glucose-resistance amyl 21.9 53 0.0018 31.0 3.2 25 398-422 2-26 (332)
329 2zcw_A TTHA1359, transcription 21.8 56 0.0019 28.4 3.1 25 399-423 147-171 (202)
330 3mnl_A KSTR, transcriptional r 21.8 80 0.0027 26.7 4.1 40 379-418 20-60 (203)
331 3i71_A Ethanolamine utilizatio 21.8 1.7E+02 0.006 22.3 5.3 35 388-422 8-42 (68)
332 2x4h_A Hypothetical protein SS 21.8 1.5E+02 0.005 24.3 5.6 27 396-422 29-55 (139)
333 1qpz_A PURA, protein (purine n 21.7 58 0.002 30.9 3.4 24 399-422 1-24 (340)
334 4aik_A Transcriptional regulat 21.5 3.6E+02 0.012 22.6 8.3 28 395-422 43-70 (151)
335 3fym_A Putative uncharacterize 21.5 1.2E+02 0.004 25.5 5.0 24 397-420 15-38 (130)
336 3g1o_A Transcriptional regulat 21.5 1.1E+02 0.0037 27.4 5.1 40 379-418 43-83 (255)
337 3nrg_A TETR family transcripti 21.4 62 0.0021 27.7 3.3 39 379-417 13-52 (217)
338 2cw1_A SN4M; lambda CRO fold, 21.3 85 0.0029 23.8 3.6 25 400-424 15-39 (65)
339 3cuo_A Uncharacterized HTH-typ 21.2 63 0.0022 24.8 3.0 28 396-423 36-63 (99)
340 1otk_A Protein PAAC, phenylace 21.2 1.5E+02 0.005 28.5 6.1 82 261-365 22-105 (249)
341 2pij_A Prophage PFL 6 CRO; tra 21.1 1.4E+02 0.0047 21.3 4.7 24 400-423 15-38 (67)
342 1b0n_A Protein (SINR protein); 21.0 73 0.0025 25.1 3.4 25 397-421 13-37 (111)
343 1gdt_A GD resolvase, protein ( 20.9 4.1E+02 0.014 23.0 9.7 24 397-420 157-180 (183)
344 3hta_A EBRA repressor; TETR fa 20.9 1.4E+02 0.0049 26.0 5.7 39 380-418 29-68 (217)
345 1y0u_A Arsenical resistance op 20.9 89 0.003 24.4 3.8 26 398-423 43-68 (96)
346 2ppx_A AGR_C_3184P, uncharacte 20.7 76 0.0026 25.0 3.4 24 397-420 42-65 (99)
347 2eth_A Transcriptional regulat 20.7 2.3E+02 0.008 23.3 6.8 25 398-422 58-82 (154)
348 1ku9_A Hypothetical protein MJ 20.7 2.1E+02 0.0073 23.0 6.4 26 397-422 40-65 (152)
349 3him_A Probable transcriptiona 20.7 67 0.0023 27.2 3.3 37 379-415 16-53 (211)
350 3lfp_A CSP231I C protein; tran 20.5 1.8E+02 0.0063 22.4 5.7 24 397-420 13-40 (98)
351 4ev0_A Transcription regulator 20.4 61 0.0021 28.2 3.0 25 399-423 164-188 (216)
352 3rkx_A Biotin-[acetyl-COA-carb 20.4 1.1E+02 0.0037 30.2 5.1 29 395-423 16-44 (323)
353 1t6s_A Conserved hypothetical 20.3 2E+02 0.0069 25.7 6.5 27 396-422 20-48 (162)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=1.1e-36 Score=318.52 Aligned_cols=227 Identities=25% Similarity=0.360 Sum_probs=199.3
Q ss_pred CChhHHHHHHhccCCCCCCChHHHHHHHHHhHHHHHHHHHHHH------------------HHHHhCCCCchHHHHHH--
Q 012638 219 QPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTT------------------LEKESGKAASLNCWAQA-- 278 (459)
Q Consensus 219 ~p~~~~~~~~~~~~~~~lLt~~eE~eL~~~i~~~~~le~~~~~------------------l~~~~gr~pt~~ewa~a-- 278 (459)
+|...|+ ......||||++||++|+++|+.++.++..... ....+++.|+..+|+..
T Consensus 94 d~~~~Yl---~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 94 DPVRQYL---HEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred ChHHHHH---HHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 5565666 345668999999999999999998765543221 12335678888887432
Q ss_pred ----------cCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCch
Q 012638 279 ----------AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348 (459)
Q Consensus 279 ----------~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rF 348 (459)
.+++..+|+..++.|..|+++||.+|+++|+++|++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 3456678888888777799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC--CCHHHHHHHHHhhccCC
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVG 426 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LG--IS~e~Vk~~l~~ar~~~ 426 (459)
+|||+|||+|.|.++|+++.+.+++|.|+.+.+++++++.+.+.+.+|+.|+.+|||+.+| +++++|..++..+..++
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999888999
Q ss_pred ccccccCCCCCCccccCCCCCC
Q 012638 427 SIDQKIGDCLNAKYLNIPPFFF 448 (459)
Q Consensus 427 SLD~~v~~d~~~~l~e~i~D~~ 448 (459)
|||.+++++++..+.|+++|..
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~ 352 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDEN 352 (438)
T ss_pred ccccccccccchhhhhhhcccc
Confidence 9999998877778889888763
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=8.9e-37 Score=318.01 Aligned_cols=231 Identities=26% Similarity=0.386 Sum_probs=197.9
Q ss_pred CChhHHHHHHhccCCCCCCChHHHHHHHHHhHHHHHHHHHHHHH------------------HHHhCCCCchHHHH----
Q 012638 219 QPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTL------------------EKESGKAASLNCWA---- 276 (459)
Q Consensus 219 ~p~~~~~~~~~~~~~~~lLt~~eE~eL~~~i~~~~~le~~~~~l------------------~~~~gr~pt~~ewa---- 276 (459)
+|...|++ .....||||++||++|+++|+.+..+....... ....++.|+..+|+
T Consensus 79 d~~~~Yl~---ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 79 DPVRQYLH---EIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp HHHHHHHH---HHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred cHHHHHHH---HhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 44555552 345589999999999999999986554432211 11234566654432
Q ss_pred -----H---HcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCch
Q 012638 277 -----Q---AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348 (459)
Q Consensus 277 -----~---a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rF 348 (459)
. +.++++.+|+..++.|..|+++||.+|+++|+++|++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 2 34667788999998887799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC--CCHHHHHHHHHhhccCC
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVG 426 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LG--IS~e~Vk~~l~~ar~~~ 426 (459)
+|||+|||+|+|.++|+++.+.+++|.|+.+.+++++++.+.+.+.+|+.|+.+|||+.|| +++++|..++..+..++
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccccccCCCCCCccccCCCCCC-CCcc
Q 012638 427 SIDQKIGDCLNAKYLNIPPFFF-PSFA 452 (459)
Q Consensus 427 SLD~~v~~d~~~~l~e~i~D~~-~~~~ 452 (459)
|||.|++++++.++.|+++|+. ++|+
T Consensus 316 Sld~~~~~~~~~~l~d~l~d~~~~~pe 342 (423)
T 2a6h_F 316 SLETPIGDEKDSFYGDFIPDEHLPSPV 342 (423)
T ss_dssp ESSCBCSSSSSCBGGGSSCCSSSCCHH
T ss_pred ccccccCCCCccchhhhhccccCCCHH
Confidence 9999998888888999998864 4443
No 3
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=7.3e-37 Score=297.70 Aligned_cols=207 Identities=25% Similarity=0.384 Sum_probs=124.3
Q ss_pred CChhHHHHHHhccCCCCCCChHHHHHHHHHhHHHHHHH-HHHHHH--HHH-----------------------hCCCCch
Q 012638 219 QPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLE-RIKTTL--EKE-----------------------SGKAASL 272 (459)
Q Consensus 219 ~p~~~~~~~~~~~~~~~lLt~~eE~eL~~~i~~~~~le-~~~~~l--~~~-----------------------~gr~pt~ 272 (459)
||...++ ..++..||||++||++|+++|+.++.+. .+.... ... .+.+|+.
T Consensus 7 d~~~~yl---~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~ 83 (245)
T 3ugo_A 7 DPVRQYL---HEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 83 (245)
T ss_dssp HHHHHHH---HHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHH
T ss_pred CcHHHHH---HHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchh
Confidence 5555555 3456689999999999999999987743 332210 000 1468889
Q ss_pred HHHHHHcCCC----HHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCch
Q 012638 273 NCWAQAAGVS----ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348 (459)
Q Consensus 273 ~ewa~a~g~d----eeeL~~~l~~G~~Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rF 348 (459)
.+||.+.+++ ...|+..++.|..|+++||..|.++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F 163 (245)
T 3ugo_A 84 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 163 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCH
T ss_pred HHHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcH
Confidence 9999998775 345666667777799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC--CCHHHHHHHHHhhccCC
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVG 426 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LG--IS~e~Vk~~l~~ar~~~ 426 (459)
+||++||||++|.++++++.+.+++|.++.+.++++.++.+.|...+++.||++|||+.|| ||+++|+.++.+++.++
T Consensus 164 ~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~l 243 (245)
T 3ugo_A 164 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 243 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred cc
Q 012638 427 SI 428 (459)
Q Consensus 427 SL 428 (459)
||
T Consensus 244 sl 245 (245)
T 3ugo_A 244 SL 245 (245)
T ss_dssp --
T ss_pred CC
Confidence 86
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.94 E-value=2.5e-28 Score=264.82 Aligned_cols=186 Identities=26% Similarity=0.485 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHcCCCHHHHHHHHHhchH-H---HHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHH
Q 012638 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY-C---REELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328 (459)
Q Consensus 253 ~~le~~~~~l~~~~gr~pt~~ewa~a~g~deeeL~~~l~~G~~-A---re~LI~~nlrLV~sIAkry~g~g~d~EDLIQE 328 (459)
..+++....++...|-.+. +...|+.+++.|+. | |+.||..|.++|+++|++|++++.+++||+||
T Consensus 338 ~~~q~kL~~ie~~~~~~~~----------~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE 407 (613)
T 3iyd_F 338 HRALQKLQQIEEETGLTIE----------QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 (613)
T ss_dssp HHHHHHHHHHHHHHTSCTT----------THHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHH
T ss_pred HHHHHHHHHHHHHhCCChH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3344444455555554331 35678899999976 6 99999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 012638 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408 (459)
Q Consensus 329 G~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~L 408 (459)
||||||+++++||+.+|++|+||++|||+|+|+++++++.+++++|.|+.+.+++++++...+.+++|+.||.+|||+.|
T Consensus 408 ~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l 487 (613)
T 3iyd_F 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 (613)
T ss_dssp HHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTS
T ss_pred HHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCCccccccCCCCCCccccCCCCCC
Q 012638 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPPFFF 448 (459)
Q Consensus 409 GIS~e~Vk~~l~~ar~~~SLD~~v~~d~~~~l~e~i~D~~ 448 (459)
|+++++|+.++..++.++||+.+++++++..+.++++|..
T Consensus 488 ~~~~~~v~~~~~~~~~~~sld~~~~~~~~~~l~d~i~d~~ 527 (613)
T 3iyd_F 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527 (613)
T ss_dssp SCCSSHHHHHHHHSCCCCCSSCCCSSSSSCCGGGSCCCSS
T ss_pred CCCHHHHHHHHHhccCCcccCCCCCCCCCccHHHHhcCCC
Confidence 9999999999999999999999999888889999998864
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.82 E-value=4.4e-21 Score=178.93 Aligned_cols=165 Identities=26% Similarity=0.356 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHH
Q 012638 282 SERVLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360 (459)
Q Consensus 282 deeeL~~~l~~G~~-Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI 360 (459)
+..+|+..++.|+. |++.|+..|.++|+++|++|.++..+++||+|||++++|+++++||+.+|.+|.||+++|++|.+
T Consensus 14 ~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~ 93 (243)
T 1l0o_C 14 EMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEI 93 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 45678888999977 99999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccCCccccccCCCC--CC
Q 012638 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCL--NA 438 (459)
Q Consensus 361 ~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~~v~~d~--~~ 438 (459)
.+++|++. .+++|.++.....+++++...+....++.|+.++|+..+|++.+.+...+.....+.|++.|+.+++ ..
T Consensus 94 ~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 172 (243)
T 1l0o_C 94 QRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPI 172 (243)
T ss_dssp ------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------------
T ss_pred HHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCccc
Confidence 99999886 7899999999999999999999999999999999999999999999998888777889998865433 24
Q ss_pred ccccCCCCC
Q 012638 439 KYLNIPPFF 447 (459)
Q Consensus 439 ~l~e~i~D~ 447 (459)
++.+.++++
T Consensus 173 ~~~~~~~~~ 181 (243)
T 1l0o_C 173 TLLDQIADA 181 (243)
T ss_dssp ---------
T ss_pred chhhccCcc
Confidence 455555543
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.81 E-value=4.2e-20 Score=172.59 Aligned_cols=145 Identities=21% Similarity=0.309 Sum_probs=127.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhcccc
Q 012638 295 YCREELIKSTRPLVLFLARNYR---GLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGI 371 (459)
Q Consensus 295 ~Are~LI~~nlrLV~sIAkry~---g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~i 371 (459)
.|+++||..|.++|+.+|++|. +++.+++||+|||+++||+++++||+.+|.+|.||+++||+|.++++++++.
T Consensus 12 ~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~--- 88 (239)
T 1rp3_A 12 IEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD--- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS---
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC---
Confidence 4899999999999999999998 6789999999999999999999999999889999999999999999999874
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhc--cCCccccccCCCCCCccccC
Q 012638 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR--IVGSIDQKIGDCLNAKYLNI 443 (459)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar--~~~SLD~~v~~d~~~~l~e~ 443 (459)
+.|........++.++...+....++.|+.+|||+.+|++++.+..++.... ..+|+|.++.++++.+ .++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~ 161 (239)
T 1rp3_A 89 FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL 161 (239)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc
Confidence 5677778888999999999999999999999999999999999998876543 4568887764433333 444
No 7
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.72 E-value=1.6e-17 Score=167.36 Aligned_cols=85 Identities=34% Similarity=0.789 Sum_probs=79.9
Q ss_pred HHHHHHHHhch----HHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHH
Q 012638 284 RVLKQHLAFGW----YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359 (459)
Q Consensus 284 eeL~~~l~~G~----~Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrna 359 (459)
..|+.+++.|+ .|++.||..|+++|+++|++|++++.+++||+||||+|||+++++||+.+|++|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 56788888886 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 012638 360 ISKMVARHA 368 (459)
Q Consensus 360 I~d~Lrk~s 368 (459)
|++++|++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999999865
No 8
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.72 E-value=3.6e-17 Score=148.78 Aligned_cols=139 Identities=15% Similarity=0.103 Sum_probs=113.9
Q ss_pred HHHHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHH
Q 012638 283 ERVLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361 (459)
Q Consensus 283 eeeL~~~l~~G~~-Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~ 361 (459)
+.+|+..++.|+. |++.|+..|.+.|+++|+++.+ ..+++|++||+++++|+++++|++.. .|.||++.+++|.++
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 5678999999987 9999999999999999999999 99999999999999999999999864 599999999999999
Q ss_pred HHHHhhcccccc----------------------ccc---hHHHHHHHHHHHHHHHHH--------cCCCCCHHHHHHHh
Q 012638 362 KMVARHARGIKI----------------------PCK---LNREISKIQKARKALTNS--------HGKYPEDIEIAKYT 408 (459)
Q Consensus 362 d~Lrk~sr~irl----------------------P~~---v~e~i~kI~ka~~~L~~~--------lgr~PT~eEIAe~L 408 (459)
+++|++.+.... |.. ..+....+..+...|+.. +..+.|++|||+.|
T Consensus 87 d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~l 166 (194)
T 1or7_A 87 NYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIM 166 (194)
T ss_dssp HHHHHHTTCCTHHHHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHT
T ss_pred HHHHHHhccCccccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHH
Confidence 999987653221 111 012333455555555433 34789999999999
Q ss_pred CCCHHHHHHHHHhhcc
Q 012638 409 GLSLAEIRSASECLRI 424 (459)
Q Consensus 409 GIS~e~Vk~~l~~ar~ 424 (459)
|||+++|+..+.+++.
T Consensus 167 gis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 167 DCPVGTVRSRIFRARE 182 (194)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988865
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.69 E-value=7.1e-18 Score=152.53 Aligned_cols=143 Identities=17% Similarity=0.066 Sum_probs=117.3
Q ss_pred CCHHHHHHH-HHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHH
Q 012638 281 VSERVLKQH-LAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358 (459)
Q Consensus 281 ~deeeL~~~-l~~G~~-Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrn 358 (459)
+++.+|+.. ++.|+. |++.|+..|.+.|+.+|+++.++..+++|++||+++++|+++++|++..| .|.+|++.+++|
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 567889999 999987 99999999999999999999999999999999999999999999998765 799999999999
Q ss_pred HHHHHHHhhccccccccc--------------hHHHHHHHHHHHHHHHHH--------cCCCCCHHHHHHHhCCCHHHHH
Q 012638 359 SISKMVARHARGIKIPCK--------------LNREISKIQKARKALTNS--------HGKYPEDIEIAKYTGLSLAEIR 416 (459)
Q Consensus 359 aI~d~Lrk~sr~irlP~~--------------v~e~i~kI~ka~~~L~~~--------lgr~PT~eEIAe~LGIS~e~Vk 416 (459)
.+++++|++.+...++.. ..+....+..+...|+.. +..+.|++|||+.||||+.+|+
T Consensus 90 ~~~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~ 169 (184)
T 2q1z_A 90 RRIDGLRKDRQPEPEDLFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIK 169 (184)
T ss_dssp SCCTTTCSSSCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHH
T ss_pred HHHHHHHhhcccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHH
Confidence 999999987654333211 112233345555444333 2367899999999999999999
Q ss_pred HHHHhhcc
Q 012638 417 SASECLRI 424 (459)
Q Consensus 417 ~~l~~ar~ 424 (459)
..+.+++.
T Consensus 170 ~~l~ra~~ 177 (184)
T 2q1z_A 170 SRIRLALD 177 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988864
No 10
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.47 E-value=1.2e-13 Score=121.29 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccccccc------------------------
Q 012638 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP------------------------ 374 (459)
Q Consensus 319 g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~irlP------------------------ 374 (459)
|.+++|++|||++++|+++++||+.+ .+|.||++++++|.+++++|++.+..+.+
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 57899999999999999999999987 68999999999999999999865432211
Q ss_pred ----------cc---hHHHHHHHHHHHH-HHHH-------HcCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 375 ----------CK---LNREISKIQKARK-ALTN-------SHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 375 ----------~~---v~e~i~kI~ka~~-~L~~-------~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.. ..+....+..+.. .|+. ....+.|++|||+.||||+.+|+..+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 1122233444444 3322 3457889999999999999999999988764
No 11
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.41 E-value=2.2e-15 Score=135.09 Aligned_cols=126 Identities=6% Similarity=-0.026 Sum_probs=97.0
Q ss_pred HHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhcccccccc-
Q 012638 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPC- 375 (459)
Q Consensus 297 re~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~irlP~- 375 (459)
|+.|+..|.+.|+.+|++++++..+++|++||+|+++|+++++|++. ..|.+|++.+++|.+++++|+.......|.
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~~~~~~~e~ 80 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGEAQTSQSDA 80 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTSCCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccCcccCCcch
Confidence 67889999999999999999999999999999999999999999975 369999999999999999987532111010
Q ss_pred -----chHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 376 -----KLNREISKIQKARKALTN-SHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 376 -----~v~e~i~kI~ka~~~L~~-~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+...+..+....+++.. ....+.|++|||+.||||+++|+..+.+++.
T Consensus 81 ~~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~ 135 (157)
T 2lfw_A 81 EGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALA 135 (157)
T ss_dssp SSSSSTTTTTTTTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 111122222222222221 2346789999999999999999999998875
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.39 E-value=1.5e-13 Score=135.17 Aligned_cols=128 Identities=9% Similarity=-0.065 Sum_probs=98.6
Q ss_pred hchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccc
Q 012638 292 FGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARG 370 (459)
Q Consensus 292 ~G~~-Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~ 370 (459)
.|+. +|++|+..|.+.|+.+|++|+++..+++|++||.|+.+|+...+|++. ..|.||++++++|.+++++|+....
T Consensus 17 ~g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~~ 94 (286)
T 3n0r_A 17 RGSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEVG 94 (286)
T ss_dssp ---CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC----C
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccccC
Confidence 4555 999999999999999999999999999999999999999999999974 4699999999999999999864321
Q ss_pred cccccchHHHHHHHHHHHHHHHHH--------cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 371 IKIPCKLNREISKIQKARKALTNS--------HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 371 irlP~~v~e~i~kI~ka~~~L~~~--------lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..... +....+.++...|+.. .-.+.+++|||+.+|+|+++|+..+..++.
T Consensus 95 ~~~~~---~~~~~l~~al~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~ 153 (286)
T 3n0r_A 95 HDQGL---HAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQA 153 (286)
T ss_dssp CCCCC---CTTSHHHHHHHHHSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccc---chHHHHHHHHHhCCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 11111 1112344444444433 347889999999999999999998887654
No 13
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.28 E-value=8.6e-12 Score=105.14 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=73.2
Q ss_pred HHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHH
Q 012638 285 VLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKM 363 (459)
Q Consensus 285 eL~~~l~~G~~-Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~ 363 (459)
.|+..++.|+. |++.|+..|.+.|+.+|.++ ++..+++|++||+++.+|+.+.+|++. ..|.+|++.+++|.++++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 67888889976 99999999999999999999 888999999999999999999999974 379999999999999999
Q ss_pred HHhhccccc
Q 012638 364 VARHARGIK 372 (459)
Q Consensus 364 Lrk~sr~ir 372 (459)
+|++.+...
T Consensus 90 ~R~~~~~~~ 98 (112)
T 2o7g_A 90 IRHVRSRPR 98 (112)
T ss_dssp TC-------
T ss_pred HHHhhcccc
Confidence 998765433
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=99.19 E-value=1.8e-11 Score=98.64 Aligned_cols=77 Identities=8% Similarity=-0.048 Sum_probs=68.6
Q ss_pred HHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhc
Q 012638 290 LAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368 (459)
Q Consensus 290 l~~G~~-Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~s 368 (459)
+..|+. |++.|+..|.+.|+.+|.++.++..+++|++||+++.+|+.+++|++. ..|.+|++.+++|.+++++|++.
T Consensus 6 ~~~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 6 STAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 345655 999999999999999999999999999999999999999999999974 47999999999999999998764
No 15
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.72 E-value=9.5e-09 Score=99.19 Aligned_cols=140 Identities=7% Similarity=-0.089 Sum_probs=101.7
Q ss_pred HHHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHHhhhhcCCCCCCchhhHHHHHHHH
Q 012638 284 RVLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLL----QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358 (459)
Q Consensus 284 eeL~~~l~~G~~-Are~LI~~nlrLV~sIAkry~g~g~d~EDLI----QEG~IGLirAieKFDp~kG~rFSTYa~~wIrn 358 (459)
+.|..++..++. +.+.+...|.++|+.+............|+. ||.++.+|+.+..|++.. +|.+|++.+++|
T Consensus 85 ~~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n 162 (258)
T 3clo_A 85 DCIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYS 162 (258)
T ss_dssp HHHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEE
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHH
Confidence 356667766665 8999999999999999988877777888986 999999999999998643 699999999999
Q ss_pred HHHHHHHhhcccccc----------ccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 359 SISKMVARHARGIKI----------PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 359 aI~d~Lrk~sr~irl----------P~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
.+.++.++......+ +..+......+..-.+++......+.|++|||+.||||+++|+..+++++..
T Consensus 163 ~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 163 LSADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEK 239 (258)
T ss_dssp ECSCCCCCSSCCCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHcchhhhhHHHHHHHhhcccccccchhhHHHHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888876542111100 1111222222322233322222468899999999999999999999988753
No 16
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=93.14 E-value=3.2 Score=37.46 Aligned_cols=30 Identities=13% Similarity=-0.042 Sum_probs=26.6
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+..+.|.+|||+.||||+++|+..+.+++.
T Consensus 200 ~~~g~s~~EIA~~lgis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 200 FYEELPAKEVAKILETSVSRVSQLKAKALE 229 (239)
T ss_dssp HTSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999887764
No 17
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.04 E-value=0.15 Score=40.92 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=26.9
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+..+.|++|||+.|||++.+|+..+.+++.
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999999999988764
No 18
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=91.91 E-value=1.9 Score=44.95 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.|.+|||+.||||.++|+.++.++..
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlk 421 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALR 421 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6889999999999999999999887754
No 19
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=90.91 E-value=0.42 Score=36.69 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 382 ~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
..+.....++...+..+.+++|||+.|||+..+|+..+..++..
T Consensus 15 ~~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 15 QTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HHHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33434444444445678999999999999999999998877653
No 20
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=90.74 E-value=0.36 Score=36.47 Aligned_cols=29 Identities=14% Similarity=-0.048 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.|++|||+.||+|..+|+..+.++..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36899999999999999999999888765
No 21
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=89.76 E-value=0.38 Score=40.07 Aligned_cols=28 Identities=14% Similarity=-0.054 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.|++|||+.||||.++|+..+..+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5789999999999999999998887653
No 22
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=89.21 E-value=0.56 Score=37.38 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.|++|||+.||||+++|+..+.++..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999888764
No 23
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=89.15 E-value=0.67 Score=35.43 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.|.+|||+.||+|.++|+..+..+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998877654
No 24
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=89.04 E-value=0.14 Score=40.68 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=26.4
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+..+.+++|||+.|||+..+|+..+.+++.
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356789999999999999999999887764
No 25
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.77 E-value=0.68 Score=34.44 Aligned_cols=30 Identities=20% Similarity=0.023 Sum_probs=26.7
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+..+.|++|||+.+|+|..+|+..+++++.
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356789999999999999999999888765
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=87.06 E-value=0.32 Score=39.56 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.|++|||+.|||++.+|+..+.+++.
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45789999999999999999999887764
No 27
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.30 E-value=1.1 Score=30.30 Aligned_cols=27 Identities=15% Similarity=-0.152 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.+.+..|||+.+||+..+|...+...+
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 357999999999999999999887554
No 28
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=86.16 E-value=0.57 Score=34.18 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.|.+|||+.||+|+.+|+..+..+..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998887764
No 29
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.00 E-value=1.3 Score=35.22 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
|..||..|||+.+|+|..+|+..+...
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 778999999999999999999887754
No 30
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=84.40 E-value=1.4 Score=37.18 Aligned_cols=30 Identities=13% Similarity=-0.182 Sum_probs=26.5
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+..+.|+.|||+.||+|+.+|+..+++++.
T Consensus 38 ~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 38 YLEDYSLSEIADTFNVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356889999999999999999999888764
No 31
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=83.41 E-value=1.4 Score=31.49 Aligned_cols=25 Identities=24% Similarity=0.101 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
.+.|..|||+.+|++..+|...+..
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 4569999999999999999987753
No 32
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=82.87 E-value=1.9 Score=32.31 Aligned_cols=29 Identities=17% Similarity=-0.056 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.+..|||+.+|+|..+|+..+..+..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45779999999999999999998887654
No 33
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=81.87 E-value=1.4 Score=35.62 Aligned_cols=30 Identities=23% Similarity=0.010 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
..+.+++|||+.|||++.+|+..+..+...
T Consensus 42 ~~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 42 EKGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 367899999999999999999998876543
No 34
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=81.60 E-value=0.77 Score=36.71 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
..+.|++|||+.|||+..+|+..+.+++..
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 357899999999999999999998887653
No 35
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=80.98 E-value=8.4 Score=39.62 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.|.+|||+.||||.++|+.+..++..
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl~ 406 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKALR 406 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999998877754
No 36
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=79.87 E-value=2 Score=36.35 Aligned_cols=29 Identities=17% Similarity=0.003 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.|+.|||+.+|+|+.+|+..+++++.
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45789999999999999999999888764
No 37
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=77.31 E-value=1.9 Score=35.64 Aligned_cols=29 Identities=24% Similarity=0.056 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
.+.+++|||+.|||++.+|+..+..+...
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 37799999999999999999998877643
No 38
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=74.53 E-value=5.8 Score=36.00 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 381 i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+|-..+.++..+.|..||..|||+.+|++..+|...++..
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 345556666666777889999999999999999998877654
No 39
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=71.63 E-value=0.81 Score=41.46 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.|++|||+.||||+.+|+..+.+++.
T Consensus 212 ~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 212 YKDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp -----------------------------
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45789999999999999999999988765
No 40
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=70.11 E-value=4.7 Score=37.37 Aligned_cols=29 Identities=17% Similarity=0.035 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.|.+|||+.||||+.+|+..+..++.
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46889999999999999999999887765
No 41
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=68.39 E-value=11 Score=30.48 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 383 kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.|.++...+...+...++.++||+.+|++...+....+..
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3555666666677778999999999999999998876643
No 42
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=67.63 E-value=5.5 Score=30.23 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=24.8
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.+...+..|||+.+|+|..+|..++...+
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45567999999999999999999887654
No 43
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=66.46 E-value=4.9 Score=37.28 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.|.+|||+.||||+.+|+..+..++.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5789999999999999999999887764
No 44
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=64.69 E-value=12 Score=30.10 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 383 KIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 383 kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
.|.++...+...+. ..++.++||+.+|++...+....+.
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666666776 7899999999999999999887654
No 45
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=63.78 E-value=5.9 Score=37.00 Aligned_cols=30 Identities=7% Similarity=-0.198 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
..+.|.+|||+.||||+.+|+..+..+...
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999998877643
No 46
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=63.77 E-value=11 Score=30.80 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 383 kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.|.++...+...+...++.++||+.+||+...+....+..
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556666666666778999999999999999998876643
No 47
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=62.95 E-value=14 Score=29.74 Aligned_cols=39 Identities=8% Similarity=-0.082 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 384 I~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+.++...+...+...++.++||+.+||+...+....+..
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455566666667778999999999999999998876543
No 48
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=61.92 E-value=17 Score=28.88 Aligned_cols=38 Identities=8% Similarity=-0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 385 QKARKALTNSHGK-YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 385 ~ka~~~L~~~lgr-~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.++..-+...+.. .++.++||+.+|++..++....+..
T Consensus 5 ~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 5 ELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444455555 7899999999999999998876543
No 49
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=61.75 E-value=6.4 Score=36.65 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.+.|.+|||+.||||..+|..++..|+
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 469999999999999999999999887
No 50
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=59.83 E-value=6 Score=26.94 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+.+..|||+.+||+..+|...+...
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3799999999999999998876543
No 51
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=59.62 E-value=17 Score=28.93 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
|...|..|||+.||++..+|...+....
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567999999999999999999887664
No 52
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=58.01 E-value=15 Score=30.63 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+-.+.|..|||+.||||..+|..++..++.
T Consensus 31 Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 31 LVDGKPQATFATSLGLTRGAVSQAVHRVWA 60 (101)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999885
No 53
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=56.65 E-value=26 Score=28.17 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHH
Q 012638 311 LARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKA 390 (459)
Q Consensus 311 IAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~ 390 (459)
++.........++||.+.-.+.--.--..|...-|..|..|+..+--+. |...
T Consensus 13 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~---------------------------A~~l 65 (108)
T 3oou_A 13 YITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNY---------------------------AKEE 65 (108)
T ss_dssp HHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHH---------------------------HHHH
T ss_pred HHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHH---------------------------HHHH
Confidence 3333334568888888886666555555665555667777765543333 3333
Q ss_pred HHHHcCCCCCHHHHHHHhCC-CHHHHHH
Q 012638 391 LTNSHGKYPEDIEIAKYTGL-SLAEIRS 417 (459)
Q Consensus 391 L~~~lgr~PT~eEIAe~LGI-S~e~Vk~ 417 (459)
|.. .+.++.|||..+|. +......
T Consensus 66 L~~---~~~si~~IA~~~Gf~~~s~F~r 90 (108)
T 3oou_A 66 LLQ---TKDNLTIIAGKSGYTDMAYFYR 90 (108)
T ss_dssp HHH---CCCCHHHHHHHTTCCCHHHHHH
T ss_pred HHc---CCCCHHHHHHHcCCCChHHHHH
Confidence 321 24578888888887 3444433
No 54
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=56.41 E-value=8.3 Score=36.81 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
.+.|.+|||+.||||+.+|+..+..++..
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57899999999999999999998877643
No 55
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=55.39 E-value=28 Score=28.16 Aligned_cols=55 Identities=15% Similarity=-0.012 Sum_probs=33.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHH
Q 012638 310 FLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364 (459)
Q Consensus 310 sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~L 364 (459)
.++.........++||.+.-.+.--.--..|...-|..|..|+..+--+.....|
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL 68 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLL 68 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3344444456888888888766655555666655677777776665444444444
No 56
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=54.36 E-value=15 Score=30.74 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
..|+.|||+.||||..+|-.+-+
T Consensus 58 e~TQREIA~~lGiS~stISRi~r 80 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRGSN 80 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhhhHHHH
Confidence 48999999999999999987743
No 57
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=54.32 E-value=11 Score=28.77 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+|..|||+.+|+|..+|-.+++-.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999998743
No 58
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=53.38 E-value=22 Score=31.93 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCC-HHHHHHHHHh
Q 012638 384 IQKARKALTNSHGKYPEDIEIAKYTGLS-LAEIRSASEC 421 (459)
Q Consensus 384 I~ka~~~L~~~lgr~PT~eEIAe~LGIS-~e~Vk~~l~~ 421 (459)
+...+.++..+.|-.||..|||+.+|++ ..+|...+..
T Consensus 11 i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 11 VFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 4444445555567778999999999999 8998877653
No 59
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=52.90 E-value=55 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46799999999999999999887754
No 60
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=51.87 E-value=21 Score=29.41 Aligned_cols=39 Identities=10% Similarity=-0.083 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 384 I~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+.++...+...+...++.++||+.+|++...+....+..
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 344555555566678899999999999999998876543
No 61
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=51.32 E-value=27 Score=27.25 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
...|..|||+.||++..+|...+....
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999887653
No 62
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=51.03 E-value=28 Score=28.60 Aligned_cols=54 Identities=4% Similarity=-0.031 Sum_probs=31.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHH
Q 012638 310 FLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364 (459)
Q Consensus 310 sIAkry~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~L 364 (459)
.++.........++||.+...+.--.--..|... |..|..|+..+--+.....|
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL 67 (120)
T 3mkl_A 14 TVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLI 67 (120)
T ss_dssp HHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 3333333446788888877666555555556554 66777776654444443433
No 63
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=50.72 E-value=32 Score=25.88 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|..|+|+.+||+..+|..+.+
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 367999999999999999998775
No 64
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=49.98 E-value=16 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.|..|||+.|||+...|...+...
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 899999999999999999988754
No 65
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=49.64 E-value=30 Score=32.38 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHcCCCHHHHHH
Q 012638 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288 (459)
Q Consensus 255 le~~~~~l~~~~gr~pt~~ewa~a~g~deeeL~~ 288 (459)
+.++..-++..+...++.+++|+.+|++...|.+
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r 38 (292)
T 1d5y_A 5 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQR 38 (292)
T ss_dssp HHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 3445555666667788888888888888877654
No 66
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=48.82 E-value=48 Score=26.96 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
-.|+.+.+.+.+.+.+.+.-....++......+..| .. ....+..+||+.+|++..+|..++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~--~~~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 8 LGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSI-------RC--AACITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH-------HH--HSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-------Hh--cCCCCHHHHHHHHCCChHHHHHHHHHH
Confidence 456666677777777765433333332222222222 11 125799999999999999999887754
No 67
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=48.46 E-value=25 Score=26.93 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..++..|||+.+|++..+|...+....
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~ 39 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLE 39 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999999877643
No 68
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=48.36 E-value=21 Score=29.79 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 383 kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
.+.++...+...+...++.++||+.+|++...+..+.+.
T Consensus 12 ~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 12 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455566666666677899999999999999999877654
No 69
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=47.46 E-value=45 Score=24.10 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|..++|+.+|++..+|..+.+
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 468999999999999999988765
No 70
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=46.37 E-value=31 Score=32.06 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 374 P~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
|...+|.-....++.. .+...+..++|+.+|||...|..++..++-|
T Consensus 23 plS~yErg~~y~r~L~-----~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP 69 (189)
T 3mky_B 23 PTSAYERGQRYASRLQ-----NEFAGNISALADAENISRKIITRCINTAKLP 69 (189)
T ss_dssp CCCHHHHHHHHHHHHH-----TTTTTCHHHHHHHHTSCHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHh-----cCcccCHHHHHHHHCCCHHHHHHHHHHhcCC
Confidence 4455555554444333 2567899999999999999999999988755
No 71
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=46.11 E-value=46 Score=27.49 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=40.6
Q ss_pred hhhcCCCCCCchhhHHHHHHHHHHHHHHHhhc-cccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHH
Q 012638 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHA-RGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 337 ieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~s-r~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~V 415 (459)
.++|+.. .+-.|...++.+.+.+.+.+.- ....++......+. .|. . ....+..|||+.+|++..+|
T Consensus 4 M~~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~-------~l~-~-~~~~t~~ela~~l~~~~~tv 71 (148)
T 3nrv_A 4 MQKINID---RHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIIS-------VLS-S-ASDCSVQKISDILGLDKAAV 71 (148)
T ss_dssp -CCSCGG---GCHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHH-------HHH-H-SSSBCHHHHHHHHTCCHHHH
T ss_pred cccccHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-------HHH-c-CCCCCHHHHHHHHCCCHHHH
Confidence 3455543 2455666667777776665432 11122222111111 111 1 23789999999999999999
Q ss_pred HHHHHhh
Q 012638 416 RSASECL 422 (459)
Q Consensus 416 k~~l~~a 422 (459)
..++...
T Consensus 72 s~~l~~L 78 (148)
T 3nrv_A 72 SRTVKKL 78 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 72
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=46.08 E-value=46 Score=24.92 Aligned_cols=31 Identities=10% Similarity=-0.076 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhccCCccc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSID 429 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD 429 (459)
+.|.+|+|+.+||+..+|..+.+ .+...+++
T Consensus 27 gltq~elA~~~gis~~~is~~e~-g~~~~~~~ 57 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTEN-AERRLDVI 57 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT-TSSCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC-CCCCCCHH
Confidence 57999999999999999988765 33333444
No 73
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=45.65 E-value=62 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.+++..+
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 46999999999999999999888664
No 74
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=45.29 E-value=42 Score=25.72 Aligned_cols=47 Identities=6% Similarity=-0.021 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccCCccc
Q 012638 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSID 429 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD 429 (459)
...++....+.+.... +.|.+++|+.+||+..+|..+.+- +...+++
T Consensus 14 ~~~~l~~~l~~~R~~~--glsq~~lA~~~gis~~~is~~e~g-~~~~~~~ 60 (92)
T 1lmb_3 14 DARRLKAIYEKKKNEL--GLSQESVADKMGMGQSGVGALFNG-INALNAY 60 (92)
T ss_dssp HHHHHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHTT-SSCCCHH
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcC-CCCCCHH
Confidence 3344555555544443 579999999999999999887653 3333444
No 75
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=45.00 E-value=61 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46899999999999999999887754
No 76
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=44.91 E-value=38 Score=26.68 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|+|..+|+..+...
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 46899999999999999999876643
No 77
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.46 E-value=38 Score=30.11 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=31.1
Q ss_pred HHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccCCcc
Q 012638 389 KALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428 (459)
Q Consensus 389 ~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SL 428 (459)
.++...+..+.+.+|||+.|+++..+|+..+...+..+..
T Consensus 165 ~~vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 165 QQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 3334445567899999999999999999998887765433
No 78
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=44.18 E-value=86 Score=25.59 Aligned_cols=63 Identities=8% Similarity=0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 351 Ya~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
|....+.+.+...+...-....++......+..| .. ....+..+||+.+|++..+|..++...
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~--~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRV-------CE--NPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHH-------HH--STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HH--CcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 4445555566666654433333443333322222 11 235699999999999999999887754
No 79
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=44.06 E-value=53 Score=23.95 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|..++|+.+|++..+|..+.+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 468999999999999999988765
No 80
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=43.35 E-value=63 Score=28.20 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.++...+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQ 194 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46899999999999999999888664
No 81
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=43.19 E-value=71 Score=26.22 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 350 TYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 350 TYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.|..+.+.+.+.+.+.+.-....++......+..| ... ...+..|||+.+|++..+|...+...
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 12 SFDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGI-------EAN--EPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHH-------HHH--SSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH-------HHc--CCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 44555666666666665433333332222222222 111 36799999999999999999887754
No 82
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=43.01 E-value=45 Score=28.76 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.|-..|.++||+..||+.+++...
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~ 52 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRH 52 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHH
Confidence 445677777777777777899999999999999999754
No 83
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=42.97 E-value=70 Score=26.60 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
-.|..+.+.+.+.+.+.+.-....++......+. .|.. ....+..|||+.+|++..+|..++...
T Consensus 21 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~-------~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 21 LSFALYSANLAMHKLYRGLLKALDLTYPQYLVML-------VLWE--TDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHH-------HHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-------HHHh--CCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 4466666666677766654333333322111111 1211 235799999999999999999887754
No 84
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.81 E-value=1.1e+02 Score=24.77 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+...+..|||+.+|++..+|..++...
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 446799999999999999999887754
No 85
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=42.61 E-value=75 Score=26.36 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
-.|..+.+.+.+.+.+.+.-....++......+. .|. ..+...+..|||+.+|++..+|..++...
T Consensus 13 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~-------~l~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 13 IGFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLV-------LAC-EQAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHH-------HHH-HSTTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHH-hCCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 3455556666666666554332233321111111 121 22334699999999999999999887754
No 86
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=42.49 E-value=52 Score=25.95 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=42.2
Q ss_pred hhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHH
Q 012638 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394 (459)
Q Consensus 315 y~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~ 394 (459)
|.......+||...-.+.--.--..|...-|..|..|+...- +..|...|..
T Consensus 15 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~R---------------------------l~~A~~lL~~- 66 (103)
T 3lsg_A 15 YTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKR---------------------------MEKAKLLLLT- 66 (103)
T ss_dssp TTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHH---------------------------HHHHHHHHHH-
T ss_pred ccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHH---------------------------HHHHHHHHHC-
Confidence 333367788887776555555455555444556666654433 3333333332
Q ss_pred cCCCCCHHHHHHHhCC-CHHHHHHH
Q 012638 395 HGKYPEDIEIAKYTGL-SLAEIRSA 418 (459)
Q Consensus 395 lgr~PT~eEIAe~LGI-S~e~Vk~~ 418 (459)
.+.++.|||..+|. +.......
T Consensus 67 --~~~si~~iA~~~Gf~~~s~F~r~ 89 (103)
T 3lsg_A 67 --TELKNYEIAEQVGFEDVNYFITK 89 (103)
T ss_dssp --CCCCHHHHHHHTTCSCHHHHHHH
T ss_pred --CCCCHHHHHHHhCCCCHHHHHHH
Confidence 25688899999988 44444433
No 87
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=42.39 E-value=56 Score=24.40 Aligned_cols=33 Identities=15% Similarity=0.002 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
++.|.+++|+.+||+..+|..+.+- +...+++.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g-~~~~~~~~ 55 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN-SRNLTIKS 55 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-CCCCBHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC-CCCCCHHH
Confidence 4689999999999999999887653 33334443
No 88
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=42.03 E-value=82 Score=25.53 Aligned_cols=25 Identities=0% Similarity=-0.116 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|..++...
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHH
Confidence 6799999999999999999887754
No 89
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=41.64 E-value=21 Score=29.53 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
-|+..+||+.+|+|..+|+.++....
T Consensus 33 lPs~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 33 IPSIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999987643
No 90
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=41.12 E-value=51 Score=26.29 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCC
Q 012638 318 LGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 397 (459)
Q Consensus 318 ~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr 397 (459)
.....+||.....+.--.--..|...-|..|..|+...- +..|...|.. .
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~R---------------------------l~~A~~lL~~---~ 68 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQR---------------------------ISQAKLLLST---T 68 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHH---------------------------HHHHHHHHHH---C
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHH---------------------------HHHHHHHHHc---C
Confidence 567788887776655544445555444566666655433 3333333321 2
Q ss_pred CCCHHHHHHHhCCC
Q 012638 398 YPEDIEIAKYTGLS 411 (459)
Q Consensus 398 ~PT~eEIAe~LGIS 411 (459)
..++.|||..+|.+
T Consensus 69 ~~si~~IA~~~Gf~ 82 (107)
T 2k9s_A 69 RMPIATVGRNVGFD 82 (107)
T ss_dssp CCCHHHHHHHTTCC
T ss_pred CCCHHHHHHHhCCC
Confidence 46788888888775
No 91
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=40.95 E-value=42 Score=29.79 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.++...+
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLE 200 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 46999999999999999999988764
No 92
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=40.89 E-value=63 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 373 IPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 373 lP~~v~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
......+...+|-.+..+|..+.| ...|..+||+..|++.+++-..
T Consensus 2 M~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 2 MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHH
No 93
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=40.88 E-value=39 Score=29.18 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..+.|+.|||+.+|+|..+|....++..
T Consensus 73 ~~G~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 73 KQGYTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3468999999999999999987766443
No 94
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=40.66 E-value=67 Score=24.38 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
++.|..|+|+.+||+..+|..+.+--....+++.
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~ 63 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLES 63 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHH
Confidence 4689999999999999999987763332245443
No 95
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.48 E-value=21 Score=30.26 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+-|+..++|+.+|+|..+|+.++....
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L~ 63 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQELE 63 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 458999999999999999999988653
No 96
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=40.15 E-value=92 Score=24.06 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
.++.|..++|+.+||+..+|..+.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3568999999999999999988755
No 97
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=40.11 E-value=19 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...|++|.|+.+||+..++..+.+..
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHcC
Confidence 44699999999999999999998763
No 98
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=39.97 E-value=11 Score=40.62 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.|++|||+.||||.++|+.+++++..
T Consensus 569 e~~s~~EIA~~lgis~~tVk~~~~rAl~ 596 (613)
T 3iyd_F 569 TDHTLEEVGKQFDVTRERIRQIEAKALR 596 (613)
T ss_dssp CCCSTTGGGTTTSSCSSHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999988865
No 99
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=39.62 E-value=11 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
++.|..++|+.+||+..+|..+.+-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4679999999999999999887663
No 100
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=39.52 E-value=25 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.154 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|.+++|+.+|++..+|..+.+
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467999999999999999988765
No 101
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=39.38 E-value=77 Score=26.07 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|..++...
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHH
Confidence 5799999999999999999887754
No 102
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=39.22 E-value=42 Score=27.86 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=28.2
Q ss_pred hhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHH
Q 012638 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364 (459)
Q Consensus 315 y~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~L 364 (459)
.......++||..+..+.--.--..|...-|..|..|+..+--+.....|
T Consensus 23 ~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~Rl~~A~~lL 72 (129)
T 1bl0_A 23 NLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKL 72 (129)
T ss_dssp TTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 33445788888887666555555555544466666666554333333333
No 103
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=38.99 E-value=62 Score=26.38 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 46799999999999999999887754
No 104
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=38.80 E-value=41 Score=27.47 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=21.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHh
Q 012638 399 PEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
+|..+||+.+|+|..+|...+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999988764
No 105
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=38.70 E-value=41 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.+..|||+.+|+|..+|...++..
T Consensus 18 ~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 18 LAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 599999999999999999988765
No 106
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=38.55 E-value=97 Score=24.96 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
-.|..+.+.+.+.+.+.+.-.. .++......+.. |.. .+ ..+..|||+.+|++..+|..++...
T Consensus 13 l~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~-------l~~-~~-~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 13 IGFILRQANQRYAALFANGIGN-GLTPTQWAALVR-------LGE-TG-PCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHH-------HHH-HS-SBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHH-------HHH-cC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555666666666654333 333222222221 211 12 6799999999999999999887754
No 107
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.48 E-value=38 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=21.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 400 EDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 400 T~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
|..++|+.+||+..+|..+.+--+
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 899999999999999998876443
No 108
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=38.21 E-value=53 Score=27.99 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH
Q 012638 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 381 i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
..+|-.+..++..+.|-..|..+||+..||+.+++...
T Consensus 17 r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~ 54 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRN 54 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHH
Confidence 45666677777777775599999999999999999753
No 109
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=38.18 E-value=56 Score=27.68 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
.+...+|-.+..++..+.| ...|.++||+..||+.+++..
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHH
Confidence 3455666677777777767 579999999999999999874
No 110
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=38.16 E-value=74 Score=28.68 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.++...+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~ 202 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLK 202 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 46999999999999999999888654
No 111
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=38.09 E-value=48 Score=24.60 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
+.|.+++|+.+||+..+|..+.+
T Consensus 15 glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 67999999999999999988765
No 112
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=38.03 E-value=59 Score=27.77 Aligned_cols=40 Identities=25% Similarity=0.076 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..+|..+.| ...|.++||+..||+.+++-..
T Consensus 12 ~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~ 52 (192)
T 2fq4_A 12 ETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKW 52 (192)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHH
Confidence 445667777777777767 6789999999999999999754
No 113
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=38.03 E-value=1e+02 Score=25.81 Aligned_cols=66 Identities=8% Similarity=0.035 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 348 FSTYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.-.|....+.+.+.+.+.+.-....+.......+..|.. ....+..|||+.+|++..+|..++...
T Consensus 23 ~l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l~~---------~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 23 FIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLYR---------EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHHHH---------SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 445556666666666666544333444433333333211 245799999999999999999887754
No 114
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=38.03 E-value=20 Score=30.43 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..||..+||+.+|++..+|..+++..
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~L 75 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRL 75 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44999999999999999999998864
No 115
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=38.00 E-value=21 Score=29.26 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+.|+..|||+.+|+|..+|+.++....
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 347999999999999999999988654
No 116
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.91 E-value=52 Score=23.22 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
+.|..++|+.+|++..+|..+.+-
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 579999999999999999887653
No 117
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=37.76 E-value=72 Score=23.95 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
++.|..++|+.+||+..+|..+.+-
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999987763
No 118
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=37.74 E-value=56 Score=27.66 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|+|..+|...++..
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34899999999999999999987765
No 119
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=37.69 E-value=23 Score=28.59 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.8
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|..++..|||+.+|++..+|..++....
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36568999999999999999999887643
No 120
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.65 E-value=28 Score=30.96 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|+|..+|...++..
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5899999999999999999887764
No 121
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=37.54 E-value=62 Score=27.78 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-++..+|..+.| ...|.++||+..||+.+++-..
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~y 49 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNY 49 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHH
Confidence 344566677777777666 5689999999999999999764
No 122
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=37.48 E-value=65 Score=27.43 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 14 ETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhh
Confidence 345566677777777667 5699999999999999999764
No 123
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=37.44 E-value=28 Score=24.92 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
++.|..++|+.+||+..+|..+.+-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4679999999999999999987653
No 124
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=36.99 E-value=1e+02 Score=22.05 Aligned_cols=25 Identities=4% Similarity=-0.154 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHh
Q 012638 397 KYPEDIEIAKYTG--LSLAEIRSASEC 421 (459)
Q Consensus 397 r~PT~eEIAe~LG--IS~e~Vk~~l~~ 421 (459)
++.|.+++|+.+| ++..+|..+.+-
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 4689999999999 999999887653
No 125
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=36.91 E-value=69 Score=27.30 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHh
Confidence 3455667777777777777 6789999999999999999764
No 126
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=36.82 E-value=53 Score=27.68 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..+|..+. ...|.++||+..||+.+++...
T Consensus 14 ~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~Y~~ 52 (190)
T 2v57_A 14 RTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTVHRY 52 (190)
T ss_dssp HHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHH
Confidence 34456666666666666 8899999999999999999754
No 127
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=36.72 E-value=27 Score=29.41 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+-||..|||+.+|+|..+|+.++....
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999987653
No 128
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=36.67 E-value=65 Score=27.18 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..+|..+.| ...|..+||+..|++.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 14 VREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHH
No 129
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.55 E-value=61 Score=23.67 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
++.|..++|+.+|++..+|..+.+--....+++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~ 52 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEGRSKRPTITT 52 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHH
Confidence 4689999999999999999887664331345543
No 130
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=36.47 E-value=71 Score=27.05 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+...+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHH
Confidence 3455667777777777777 5799999999999999999753
No 131
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=36.44 E-value=65 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 14 AKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHH
Confidence 445566667777766667 6799999999999999999754
No 132
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=36.43 E-value=64 Score=26.92 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 10 ~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 49 (195)
T 3ppb_A 10 KKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHH 49 (195)
T ss_dssp HHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHH
No 133
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=36.41 E-value=80 Score=23.37 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|.+++|+.+|++..+|..+.+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 467999999999999999988765
No 134
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=36.32 E-value=27 Score=29.49 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+-|+..+||+.+|+|..+|+.++....
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKELE 60 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 347999999999999999999987653
No 135
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.25 E-value=55 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
+.|..++|+.+|++..+|..+.+
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999988765
No 136
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=36.00 E-value=76 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 384 I~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
+...++.+... ++.|.+|+|+.+||+..+|..+.+- +...+++.
T Consensus 29 ig~~lr~~R~~--~gltq~elA~~~gis~~~is~iE~G-~~~ps~~~ 72 (99)
T 3g5g_A 29 VSFVIKKIRLE--KGMTQEDLAYKSNLDRTYISGIERN-SRNLTIKS 72 (99)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHTT-CSCCBHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHCC-CCCCCHHH
Confidence 33444444333 5679999999999999999887653 33334443
No 137
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=35.99 E-value=48 Score=28.35 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.|-..|.++||+..||+.+++...
T Consensus 17 ~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~~ 55 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHHH
Confidence 345566666666666555789999999999999999753
No 138
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=35.96 E-value=44 Score=27.83 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
....+|-.+..+|..+.| ...|..+||+..||+.+++-.
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 344566677777777667 578999999999999999864
No 139
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=35.90 E-value=42 Score=31.81 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|+.|+.+++|+.+|+++++|..++....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 69999999999999999999999998765
No 140
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=35.80 E-value=53 Score=28.30 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|.++||+..||+.+++-..
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~y 50 (197)
T 2f07_A 10 GKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLY 50 (197)
T ss_dssp SHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHh
Confidence 344566667777767667 5689999999999999999764
No 141
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=35.77 E-value=70 Score=26.86 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 35799999999999999999887754
No 142
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=35.74 E-value=38 Score=28.84 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 382 ~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+|-.+..+|..+.| ...|.++||+..||+.+++-..
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~ 43 (190)
T 3vpr_A 6 DRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHH 43 (190)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 455566666666666 5689999999999999998754
No 143
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=35.67 E-value=42 Score=29.14 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
..+.+.+|||+.+|++..+|+..+...+..
T Consensus 155 ~~g~s~~~Ia~~l~is~~TV~~~~~~i~~K 184 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQK 184 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456799999999999999999887766543
No 144
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=35.66 E-value=55 Score=27.57 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 382 ~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+|-++..+|..+.| ...|.++||+..||+.+++-..
T Consensus 5 ~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 5 ERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHH
Confidence 455666666666666 5789999999999999999753
No 145
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=35.57 E-value=57 Score=27.22 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHH
No 146
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=35.53 E-value=52 Score=26.11 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
++.|..|+|+.+||+..+|..+.+- +. ++++.
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G-~~-~s~~~ 67 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN-EN-VSLTV 67 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-CC-CCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-CC-cCHHH
Confidence 4789999999999999999887663 33 36654
No 147
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=35.45 E-value=59 Score=27.93 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
+...+|-.+..++..+.| ...|..+||+..||+.+++-.
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 51 (189)
T 3vp5_A 12 EKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQ 51 (189)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHH
Confidence 344566667777777767 578999999999999999875
No 148
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=35.43 E-value=59 Score=26.96 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
.++.|.+|+|+.+||+...|..+-+
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3567888888888888888776654
No 149
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=35.43 E-value=33 Score=30.08 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..++|.+|||+.++++..+|+..+...+.
T Consensus 167 ~~g~s~~~Ia~~l~is~~TV~~hi~~i~~ 195 (215)
T 1a04_A 167 AQGLPNKMIARRLDITESTVKVHVKHMLK 195 (215)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34679999999999999999998876654
No 150
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=35.38 E-value=76 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..+||+.+|++..+|..++...
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHH
Confidence 5799999999999999999887754
No 151
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=35.37 E-value=19 Score=27.49 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
..+|..+||+.+|++..+|-.+++-
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~ln~ 32 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRALMN 32 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHTTTC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3579999999999999999887763
No 152
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=35.27 E-value=56 Score=28.12 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+...+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 57 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYY 57 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 4466677777777777777 5689999999999999999764
No 153
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=35.19 E-value=44 Score=27.99 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 50 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYH 50 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhc
Confidence 345566667777777767 5699999999999999999754
No 154
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=35.14 E-value=60 Score=27.31 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
+...+|-.+..++..+.| ...|.++||+..||+.+++
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~ 44 (199)
T 3qbm_A 7 ETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGI 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHH
No 155
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=35.10 E-value=68 Score=27.69 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 10 ~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 10 KTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 344566677777777777 6789999999999999999754
No 156
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=35.10 E-value=60 Score=27.62 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 374 PCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 374 P~~v~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+........+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 11 ~~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 11 NLETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHh
No 157
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=35.07 E-value=65 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=23.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 400 EDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 400 T~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
|..++|+.+||+..+|..+.+--....+++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p~~~~ 59 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATPAFFT 59 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHH
Confidence 9999999999999999887653321345543
No 158
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=35.05 E-value=50 Score=27.41 Aligned_cols=28 Identities=21% Similarity=0.040 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+..++..|||+.+|+|...|..++....
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~ 51 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR 51 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999999877653
No 159
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.04 E-value=65 Score=27.31 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|+|..+|...++..
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L 47 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKL 47 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35799999999999999999887764
No 160
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=35.01 E-value=32 Score=26.11 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
+..|.+++|+.+||+..+|..+.+--+...+++.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~ 55 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQF 55 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHH
Confidence 4689999999999999999887764133345443
No 161
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=34.93 E-value=62 Score=27.87 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|+|..+|...++..
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999887764
No 162
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=34.92 E-value=1.1e+02 Score=28.17 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=30.1
Q ss_pred hhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHH
Q 012638 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364 (459)
Q Consensus 315 y~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIrnaI~d~L 364 (459)
.......++|+.+...+.--.--..|.. -|..|..|+..+.-+...+.|
T Consensus 181 ~~~~~~sl~~lA~~~~~S~~~l~r~fk~-~G~t~~~~l~~~Rl~~A~~lL 229 (276)
T 3gbg_A 181 DITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLM 229 (276)
T ss_dssp TTTSCCCHHHHHHHHTCCHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHCcCHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 3344677888888776666555566653 677777776655444444444
No 163
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=34.90 E-value=30 Score=29.45 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+-|+..+||+.+|+|..+|+.++....
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~ 53 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLV 53 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999988654
No 164
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=34.60 E-value=70 Score=27.66 Aligned_cols=39 Identities=26% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..+|..+.| ...|.++||+..||+.+++-..
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~ 52 (211)
T 3bhq_A 13 KDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKH 52 (211)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 34556666667666667 5689999999999999999754
No 165
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=34.35 E-value=39 Score=26.40 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+.+..+||..+||+..+|...+...
T Consensus 38 g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 38 GESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3689999999999999998776543
No 166
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=34.12 E-value=61 Score=27.41 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHH
Confidence 4556677777777777777 5699999999999999999764
No 167
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=34.04 E-value=60 Score=27.97 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
...+|-.+..+|..+.| ...|.++||+..||+.+++-.
T Consensus 13 ~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~ 51 (205)
T 1rkt_A 13 RQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYL 51 (205)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhh
Confidence 34556666777766667 579999999999999999874
No 168
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=33.89 E-value=17 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+-|+..|||+.+|+|..+|..++....
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L~ 60 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVLK 60 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346999999999999999999887654
No 169
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=33.88 E-value=46 Score=27.64 Aligned_cols=40 Identities=20% Similarity=0.005 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 345566777777777767 4689999999999999999764
No 170
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=33.84 E-value=91 Score=26.74 Aligned_cols=66 Identities=8% Similarity=0.066 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 349 STYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
-.|..+.+.+.+.+.+.+.-....+.......+ ..|. ..+...+..|||+.+|++..+|..++...
T Consensus 27 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL-------~~L~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 27 LGSDLARLVRIWRALIDHRLKPLELTQTHWVTL-------HNIH-QLPPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHH-------HHHH-HSCSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH-------HHHH-HcCCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 345556666666666665433333332211111 1121 12445899999999999999999887754
No 171
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=33.50 E-value=43 Score=27.09 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|+|..+|+..+...
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 46799999999999999999877653
No 172
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=33.41 E-value=55 Score=25.98 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLA-EIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e-~Vk~~l~~a 422 (459)
..|..+||+.|||+.. .|...+...
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~L 50 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLIDM 50 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 5689999999999999 999887654
No 173
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=33.21 E-value=63 Score=27.79 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
+...+|-.+..++..+.| ...|.++||+..||+.+++..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~ 50 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSR 50 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHH
Confidence 345566666677766666 679999999999999999864
No 174
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=33.12 E-value=1.3e+02 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.++...+
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFV 205 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46999999999999999999888654
No 175
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.92 E-value=52 Score=24.97 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHHhhc
Q 012638 397 KYPEDIEIAKYT-----GLSLAEIRSASECLR 423 (459)
Q Consensus 397 r~PT~eEIAe~L-----GIS~e~Vk~~l~~ar 423 (459)
..+|.+||++.+ +++..+|...+....
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 578999999999 999999998877543
No 176
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=32.72 E-value=57 Score=31.56 Aligned_cols=30 Identities=17% Similarity=0.033 Sum_probs=25.9
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+....+..|||+.||+|..+|+..+..++.
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345699999999999999999999887654
No 177
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=32.65 E-value=42 Score=28.16 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 372 KIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
+.+..-.....+|-.+..++..+.| ...|.++||+..||+.+++
T Consensus 3 ~m~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (196)
T 3col_A 3 AMKKKDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNV 47 (196)
T ss_dssp -------CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHH
No 178
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=32.58 E-value=84 Score=26.44 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHGKY-PEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lgr~-PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.|-. .|..+||+..||+.+++...
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHH
No 179
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=32.58 E-value=53 Score=28.46 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|.++||..+|++.++|-.+++..+
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~ 164 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLR 164 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6999999999999999998887654
No 180
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=32.53 E-value=85 Score=27.92 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
++..|..|||+.+|+|..+|...+....
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~ 61 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLR 61 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5568999999999999999998776543
No 181
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=32.52 E-value=91 Score=26.31 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 348 FSTYa~~wIrnaI~d~Lrk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.-.|..+.+.+.+.+.+.+.-....++......+.. |. . ....+..|||+.+|++..+|..++...
T Consensus 19 ~l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~-------l~-~-~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 19 RLSYMIARVDRIISKYLTEHLSALEISLPQFTALSV-------LA-A-KPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH-------HH-H-CTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHH-------HH-H-CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 445566666666666665433222233222222211 11 1 236899999999999999999887754
No 182
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=32.49 E-value=63 Score=27.16 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (206)
T 3dew_A 9 CRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYH 48 (206)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHH
Confidence 34556667777777777 5799999999999999999764
No 183
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=32.47 E-value=37 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|..++|+.+|++..+|..+.+
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999988765
No 184
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=32.43 E-value=91 Score=25.91 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46799999999999999999887654
No 185
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=32.42 E-value=81 Score=27.31 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..+|..+.| ...|.++||+..||+.+++-..
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2wui_A 12 TRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGH 51 (210)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 34566667777777777 5689999999999999999764
No 186
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=32.37 E-value=65 Score=26.04 Aligned_cols=26 Identities=4% Similarity=0.005 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHH
Confidence 35799999999999999999887754
No 187
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.36 E-value=54 Score=29.25 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHH
Q 012638 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 381 i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~ 417 (459)
..+|-.+..+|..+.| ..|..+||+.+|++..++..
T Consensus 13 r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY~ 48 (213)
T 2g7g_A 13 RERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIYH 48 (213)
T ss_dssp HHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHHH
Confidence 4556677777778889 99999999999999999864
No 188
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=32.36 E-value=43 Score=29.95 Aligned_cols=30 Identities=13% Similarity=-0.063 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCC
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVG 426 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~ 426 (459)
.+.|.+|||+.|+++..+|+..+...+..+
T Consensus 163 ~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 163 EGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 458999999999999999999887665433
No 189
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=32.32 E-value=99 Score=23.61 Aligned_cols=33 Identities=3% Similarity=-0.128 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
++.|.+|+|+.+|++..+|..+.+ .+...+++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~-G~~~p~~~~ 58 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVET-RERRLDVIE 58 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHT-TSSCCBHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC-CCCCCCHHH
Confidence 468999999999999999988765 333335543
No 190
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=32.27 E-value=54 Score=27.54 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 372 KIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
+.+..-.....+|-.+..++..+.| ...|..+||+..|++.+++
T Consensus 3 ~~~~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tl 47 (197)
T 3rd3_A 3 HMKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSF 47 (197)
T ss_dssp -------CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred CCcchhHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhH
No 191
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=32.25 E-value=75 Score=27.41 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
.....+|-++..++..+.| ...|.++||+..||+.+++..
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~ 53 (199)
T 3crj_A 13 SDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHY 53 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhh
Confidence 3445566677777766666 678999999999999999864
No 192
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=32.17 E-value=85 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
No 193
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.07 E-value=76 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.|...|.++||+..||+.+++...
T Consensus 21 ~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~ 59 (215)
T 2hku_A 21 TRDALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYY 59 (215)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHH
No 194
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=32.06 E-value=62 Score=27.40 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 383 KIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 383 kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHH
Confidence 55556666666666 6789999999999999999753
No 195
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=31.96 E-value=87 Score=27.65 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 369 RGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 369 r~irlP~~v~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+..+......+...+|-++..+|..+.| ...|..+||+..||+.+++...
T Consensus 33 r~~~~~~r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~ 83 (229)
T 3bni_A 33 RRAPVQRRSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRF 83 (229)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHH
No 196
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=31.95 E-value=55 Score=26.83 Aligned_cols=26 Identities=15% Similarity=-0.132 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+.+..+||+.+|++..+|...+....
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHccc
Confidence 57999999999999999999887654
No 197
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.91 E-value=1.1e+02 Score=26.83 Aligned_cols=26 Identities=8% Similarity=-0.095 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.++...+
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 203 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLG 203 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35899999999999999999888665
No 198
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=31.89 E-value=87 Score=25.93 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|..++...
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999887754
No 199
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=31.86 E-value=65 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCchHHHHHHcCCCHHHHH
Q 012638 258 IKTTLEKESGKAASLNCWAQAAGVSERVLK 287 (459)
Q Consensus 258 ~~~~l~~~~gr~pt~~ewa~a~g~deeeL~ 287 (459)
++..+++..|.+||..|.|++.|++.....
T Consensus 13 I~~~i~~~~g~~psv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 13 VQERQNMDDGAPVKTRDIADAAGLSIYQVR 42 (77)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHHTCCHHHHH
T ss_pred HHHHHhhccCCCcCHHHHHHHHCCCHHHHH
Confidence 444554446899999999999999875543
No 200
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=31.71 E-value=85 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 11 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~y 50 (194)
T 2nx4_A 11 RRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHY 50 (194)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHh
Confidence 34556666666666666 6689999999999999999754
No 201
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=31.67 E-value=1e+02 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|.+|+|+.+||+..+|..+-+
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHC
Confidence 578999999999999999988753
No 202
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=31.65 E-value=81 Score=25.03 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHcCCCHHHHHHHHHh
Q 012638 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292 (459)
Q Consensus 255 le~~~~~l~~~~gr~pt~~ewa~a~g~deeeL~~~l~~ 292 (459)
++++..-+.......++.+++|+.+|++...|.+.++.
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34555566677778899999999999999888876664
No 203
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.61 E-value=55 Score=26.08 Aligned_cols=26 Identities=8% Similarity=-0.077 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+.+..+||+.+|++..+|...+...+
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57999999999999999998877643
No 204
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=31.52 E-value=53 Score=27.11 Aligned_cols=26 Identities=8% Similarity=-0.056 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 35699999999999999999887754
No 205
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=31.29 E-value=27 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.+..|+|+.||||..+|........
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 4678999999999999988776544
No 206
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=31.15 E-value=76 Score=27.98 Aligned_cols=25 Identities=12% Similarity=-0.089 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|+|..+|...++..
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L 55 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999988765
No 207
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=31.15 E-value=90 Score=27.46 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.++...+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 46999999999999999999888664
No 208
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=31.11 E-value=71 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 445667777777777777 5799999999999999999754
No 209
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=30.98 E-value=77 Score=27.39 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|.++||..+|++.++|-.++...+
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5899999999999999999888664
No 210
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=30.94 E-value=39 Score=26.84 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+....+.+++..|.. +...|..+||..||++...|..++....
T Consensus 12 ~~~~~v~~~i~~L~~--~~~~Ta~~IAkkLg~sK~~vNr~LY~L~ 54 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNT--NDYTTAISLSNRLKINKKKINQQLYKLQ 54 (75)
T ss_dssp HHHHHHHHHHHTSCT--TCEECHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CcchHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455555554432 3336999999999999999998877554
No 211
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=30.88 E-value=40 Score=24.76 Aligned_cols=32 Identities=3% Similarity=-0.039 Sum_probs=24.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
+.|..|+|+.+||+..+|..+.+-- ...+++.
T Consensus 21 glsq~~lA~~~gis~~~is~~e~g~-~~~~~~~ 52 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCTND-VQPSLET 52 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTTS-SCCCHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCC-CCCCHHH
Confidence 6799999999999999999887533 2335443
No 212
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=30.81 E-value=86 Score=25.83 Aligned_cols=25 Identities=4% Similarity=-0.098 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..+||+.+|++..+|..++...
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6799999999999999999887754
No 213
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=30.78 E-value=75 Score=27.11 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 8 KRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHH
Confidence 344566677777777766 5679999999999999999764
No 214
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=30.65 E-value=75 Score=27.35 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
...+|-.+..++..+.| ...|.++||+..|++.+++-.
T Consensus 10 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~ 48 (203)
T 3cdl_A 10 KRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYN 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHH
Confidence 34556666666666666 578999999999999999874
No 215
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.51 E-value=84 Score=26.68 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|+|..+|...++..
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5899999999999999999887754
No 216
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=30.51 E-value=2.4e+02 Score=23.68 Aligned_cols=76 Identities=13% Similarity=-0.027 Sum_probs=51.2
Q ss_pred hC-CCCchHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh-hhhcC
Q 012638 266 SG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG-AERFD 341 (459)
Q Consensus 266 ~g-r~pt~~ewa~a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirA-ieKFD 341 (459)
.| ...|..+.|+++|++...+-.-...-+.-+..++..+...+..........+.+..+.+...+..++.. +...+
T Consensus 30 ~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (212)
T 3knw_A 30 KGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQS 107 (212)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC------
T ss_pred cCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhcc
Confidence 36 578999999999999988887666555566667777666666666555555677777777766666665 44433
No 217
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=29.96 E-value=38 Score=29.26 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh--ccCCccccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL--RIVGSIDQK 431 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a--r~~~SLD~~ 431 (459)
..||.++||+.+|+++.+|...+... +..+++...
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~ 86 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEEC 86 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 66999999999999999999988764 345666443
No 218
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=29.82 E-value=90 Score=26.33 Aligned_cols=25 Identities=8% Similarity=-0.058 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|..++...
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6799999999999999999887754
No 219
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.82 E-value=85 Score=26.60 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|+|..+|...++..
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35799999999999999999887764
No 220
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=29.61 E-value=67 Score=27.70 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-++..+|..+.| ...|.++||+..||+.+++-..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWH 51 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHH
Confidence 345567777777777777 6789999999999999999753
No 221
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=29.21 E-value=41 Score=26.19 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..+.+|||+.+|++.+.|..+++..+
T Consensus 48 ~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 48 SKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 36899999999999999999988655
No 222
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=29.21 E-value=93 Score=25.84 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|..++...
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999887754
No 223
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.18 E-value=91 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.017 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
..+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 10 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~ 48 (202)
T 2d6y_A 10 KARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAY 48 (202)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 3455566666666666 5789999999999999999764
No 224
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=29.18 E-value=86 Score=26.17 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
++.|.+|+|+.+||+..+|..+.+--....+++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~ 85 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNYKLEGFSVER 85 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHH
Confidence 4689999999999999999887653221456654
No 225
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=29.11 E-value=1.8e+02 Score=23.68 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..+||+.+|++..+|..++...
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 46799999999999999999887754
No 226
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=29.08 E-value=1.1e+02 Score=21.71 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHHhh
Q 012638 396 GKYPEDIEIAKYT-----GLSLAEIRSASECL 422 (459)
Q Consensus 396 gr~PT~eEIAe~L-----GIS~e~Vk~~l~~a 422 (459)
+..+|.+||++.+ +++..+|..-+...
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4578999999999 99999999888743
No 227
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=29.04 E-value=75 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
..+|-.+..++..+.| ...|.++||+..|++.+++
T Consensus 13 r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 48 (196)
T 3he0_A 13 RDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTI 48 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchH
No 228
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=28.99 E-value=1e+02 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|.+|+|+.+||+..+|..+.+
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457999999999999999887654
No 229
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=28.95 E-value=94 Score=26.59 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 51 (216)
T 3f0c_A 12 KLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYY 51 (216)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHH
No 230
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=28.86 E-value=80 Score=29.81 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=30.8
Q ss_pred HhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 365 rk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...++.+.+|...-.. ..|..+++|+..|+++++|..+-..+
T Consensus 80 ~~~~r~v~IPV~Y~~~----------------~gpDL~~vA~~~gLs~~evi~~H~~~ 121 (225)
T 2phc_B 80 RIKGKTIEIPVAYGGE----------------FGPDIEFVAQYNGLSVDDVIEIHSKP 121 (225)
T ss_dssp HHHTTEEEEEEEESTT----------------TCTTHHHHHHHHTCCHHHHHHHHHSS
T ss_pred CCCCcEEEEEeEeCCC----------------CCCCHHHHHHHhCcCHHHHHHHhhCC
Confidence 3445677888653211 26899999999999999998876544
No 231
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=28.81 E-value=95 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 17 TTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhh
Confidence 344556666667666666 5689999999999999999764
No 232
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=28.77 E-value=75 Score=26.31 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..+||+.+|++..+|..++...
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5699999999999999999887754
No 233
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=28.73 E-value=1.1e+02 Score=27.41 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 377 LNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 377 v~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
......+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 21 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~ 63 (231)
T 2zcx_A 21 KQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRY 63 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 34455666677777766667 5799999999999999999754
No 234
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=28.35 E-value=86 Score=29.10 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.+|..+...+...-+....|..+--...|-+|||+.+|++..+|+.-+.+.
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~f 57 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYF 57 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 467777777777777777777664456799999999999999999877654
No 235
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=28.34 E-value=1.2e+02 Score=26.63 Aligned_cols=25 Identities=28% Similarity=0.115 Sum_probs=22.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|.++||..+|++.++|-.+++..+
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~ 188 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLI 188 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6999999999999999998887654
No 236
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=28.29 E-value=51 Score=27.99 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|+|..+|...++..
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999887764
No 237
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=28.27 E-value=92 Score=25.04 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 390 ~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+...+.|...+.-+||+.+|++-.+|..++...+.
T Consensus 26 e~LkeaG~PlkageIae~~GvdKKeVdKaik~LKk 60 (80)
T 2lnb_A 26 QVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKK 60 (80)
T ss_dssp HHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344588889999999999999999999887764
No 238
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=28.25 E-value=80 Score=26.78 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 8 AEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 34456666667666666 5589999999999999999765
No 239
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=27.95 E-value=47 Score=24.70 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhccC
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLRIV 425 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar~~ 425 (459)
-.+..|+|+.||++..+|....+...-|
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~fP 37 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDLP 37 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCCC
Confidence 4588999999999999999988765433
No 240
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=27.87 E-value=83 Score=27.44 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=18.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHHh
Q 012638 400 EDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 400 T~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
|..|+|+.+|++..+|....+.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8899999999999888887653
No 241
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=27.83 E-value=78 Score=29.28 Aligned_cols=50 Identities=6% Similarity=0.078 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 373 lP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+|..+...+...-+....|..+--...|-+|||+.+|++..+|+.-+.+.
T Consensus 3 i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 3 VPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 45444455555555666666554455799999999999999999877664
No 242
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=27.82 E-value=52 Score=27.50 Aligned_cols=40 Identities=25% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (195)
T 3pas_A 8 SKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIY 48 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHH
No 243
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=27.82 E-value=1.2e+02 Score=23.97 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHh-----CCCHHHHHHHHHhhccC
Q 012638 383 KIQKARKALTNSH--GKYPEDIEIAKYT-----GLSLAEIRSASECLRIV 425 (459)
Q Consensus 383 kI~ka~~~L~~~l--gr~PT~eEIAe~L-----GIS~e~Vk~~l~~ar~~ 425 (459)
.|+..+.+|.... ....|+++||+.| .|+..+|..+.....-+
T Consensus 20 ~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~Gi~IaRRTVaKYRe~l~Ip 69 (76)
T 2ahq_A 20 ELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIP 69 (76)
T ss_dssp HHHHHHHHHGGGCCSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHcCCC
Confidence 3455555555543 3457999999999 89999999987766544
No 244
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=27.54 E-value=13 Score=28.73 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhccCCccccccCCCCCCccccCCCCC
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLNIPPFF 447 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~~v~~d~~~~l~e~i~D~ 447 (459)
.++.|..++|+.+|++..+|..+... . ..++...|-+--+.++.++.++.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~-~-~p~~~~~IA~aLgv~~~~L~~~r 69 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER-H-WPKGEQIIANALETKPEVIWPSR 69 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS-S-CHHHHHHHHHHTTSCHHHHCTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC-C-CccHHHHHHHHHCcCHHHHhHHh
Confidence 45789999999999999999977553 1 12233223333445555555554
No 245
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=27.49 E-value=89 Score=26.93 Aligned_cols=40 Identities=13% Similarity=0.015 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 15 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~ 55 (221)
T 3c2b_A 15 PRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 344566667777767667 5689999999999999999764
No 246
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.37 E-value=68 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
..+|-.+..++..+.| ...|..+||+..|++.+++..
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 10 LQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 3456666666666666 568999999999999999864
No 247
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=27.31 E-value=51 Score=24.61 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
...|.+|+|+.+||+..+|...-+
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 468999999999999999988765
No 248
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=27.26 E-value=83 Score=27.29 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
..+|-++..+|..+.| ...|.++||+..||+.+++-..
T Consensus 10 r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~y 48 (206)
T 1vi0_A 10 YMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLY 48 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHH
Confidence 3456666666666666 5689999999999999999753
No 249
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=27.16 E-value=1.4e+02 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..|.++||..+|++.++|-.++...+
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~ 218 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLR 218 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 46999999999999999999988664
No 250
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=27.12 E-value=72 Score=27.00 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=23.6
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+..+.|+.|||+.+|+|..+|..+.++.+
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r~L~ 83 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNRSLN 83 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHHHHH
Confidence 44569999999999999999987665543
No 251
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=27.07 E-value=92 Score=27.24 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-++..++..+.| ...|.++||+..||+.+++-..
T Consensus 10 ~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~ 49 (215)
T 1ui5_A 10 TRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFH 49 (215)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhHhh
Confidence 34556666666666666 6789999999999999998753
No 252
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=26.88 E-value=70 Score=29.95 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+-|+..|||+.+|+|..+|+.++...
T Consensus 35 ~lPse~~La~~~~vSr~tvr~Al~~L 60 (248)
T 3f8m_A 35 PFPAEREIAEQFEVARETVRQALREL 60 (248)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56899999999999999999998764
No 253
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=26.63 E-value=1.2e+02 Score=25.10 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..++..+||+.+|++..+|..++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~L 46 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKL 46 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 36899999999999999999887754
No 254
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=26.58 E-value=42 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+..++..|||+.+|++..+|...+...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999999999999999987765
No 255
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=26.51 E-value=61 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
...+|-.+..++..+.| ...|..+||+..|++.+++..
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~ 46 (180)
T 2fd5_A 8 TRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYA 46 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGG
T ss_pred CHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHH
Confidence 44556666666666666 578999999999999888753
No 256
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=26.37 E-value=83 Score=26.08 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=22.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|..|||+.+|++..+|...+....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~ 67 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLH 67 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6999999999999999999887653
No 257
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=26.36 E-value=96 Score=26.40 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 377 LNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 377 v~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
..+...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 24 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHH
Confidence 34455667777777777777 6799999999999999999754
No 258
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.28 E-value=59 Score=27.13 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
...+|-.+..++..+.| ...|..+||+..|++.+++
T Consensus 7 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 43 (191)
T 1sgm_A 7 SREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSL 43 (191)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHH
T ss_pred hHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhH
No 259
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=25.85 E-value=1.2e+02 Score=25.63 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 382 ~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+|-.+..+|..+.| ...|.++||+..|++..++...
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYH 44 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHh
Confidence 455566666666666 5689999999999999999753
No 260
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.82 E-value=96 Score=27.28 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 445567777777777767 5699999999999999999764
No 261
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.73 E-value=1.2e+02 Score=26.74 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
.....+|-.+..++..+.| ...|..+||+..|++..++..
T Consensus 15 ~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 55 (216)
T 2oi8_A 15 TQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 4455566667777666666 569999999999999999864
No 262
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=25.72 E-value=58 Score=26.75 Aligned_cols=25 Identities=4% Similarity=-0.079 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..+||+.+|++..+|..++...
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L 78 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRM 78 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHH
Confidence 5799999999999999999887654
No 263
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=25.69 E-value=1.1e+02 Score=23.38 Aligned_cols=24 Identities=8% Similarity=-0.098 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
+.|..++|+.+||+..+|..+.+-
T Consensus 21 gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 468888888888888888777653
No 264
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=25.65 E-value=95 Score=28.62 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 384 I~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
+.++...+...+....+.+++|+.+|+|...+....+
T Consensus 171 ~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 171 MEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455555556667788999999999999999988765
No 265
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=25.64 E-value=60 Score=24.89 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
.+..|.+|+|+.+||+..+|..+.+
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3578999999999999999988765
No 266
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=25.60 E-value=83 Score=25.66 Aligned_cols=66 Identities=5% Similarity=0.027 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHH-HhhccccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 348 FSTYVQYWIRKSISKMV-ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 348 FSTYa~~wIrnaI~d~L-rk~sr~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.-.|....+.+.+.+.+ .+.-....++......+ ..|.. ....+..|||+.+|++..+|..++...
T Consensus 9 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL-------~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 9 QLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVL-------TILWD--ESPVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHH-------HHHHH--SSEEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHH-------HHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 44566666777776666 43322222322111111 11211 235799999999999999999887754
No 267
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=25.46 E-value=1.1e+02 Score=25.23 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|+|..+|...++..
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4689999999999999999887754
No 268
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=25.46 E-value=1.6e+02 Score=25.24 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=34.7
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 369 RGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 369 r~irlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..+.+|.........-+. .+..++. +.+..|+|...|+|+.+|..++...+.
T Consensus 67 ~~iYIPk~~~~~~~~Rn~---~I~~~f~-G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 67 GQVYIPRGQALDSLIRDL---RIWNDFN-GRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp SCCCCCCSHHHHHHHHHH---HHHHHCC-SSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eeEEeeCCchHHHHHHHH---HHHHHhC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456777765433222122 2233444 679999999999999999999876653
No 269
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.38 E-value=52 Score=28.28 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
...+|-++..+|..+.| ...|.++||+..||+.+++-.
T Consensus 15 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 15 IRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp HHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 44566677777777777 678999999999999988753
No 270
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=25.33 E-value=1.1e+02 Score=26.47 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+...+|-.+..+|..+.| ...|..+||+..|++.+++-..
T Consensus 11 ~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~h 52 (198)
T 3cjd_A 11 AALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTH 52 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHH
Confidence 3455567777777777666 5689999999999999998753
No 271
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=25.21 E-value=87 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 383 kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.|.++...+.+ ....+.++||..+|++...+..+.+..
T Consensus 80 ~l~~a~~~i~~--~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 80 KITHACRLLEQ--ETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp HHHHHHHHTCS--SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44555544433 567899999999999998888776543
No 272
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=25.16 E-value=91 Score=26.66 Aligned_cols=40 Identities=5% Similarity=0.079 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..+|..+.| ...|.++||+..||+.+++-..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 52 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHH 52 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 344566667777777767 6789999999999999998754
No 273
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=25.11 E-value=89 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| . .|.++||+..|++..+|...
T Consensus 13 ~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~~ 51 (224)
T 1t33_A 13 AKSQLIAAALAQFGEYGLH-ATTRDIAALAGQNIAAITYY 51 (224)
T ss_dssp HHHHHHHHHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHh
Confidence 44556666666666666 6 99999999999999999764
No 274
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=25.10 E-value=41 Score=30.05 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
-.|..|+|+.|||+..+|..+++..+
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G~ 56 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGH 56 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCCC
Confidence 45899999999999999999988654
No 275
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=25.07 E-value=1.1e+02 Score=26.89 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+...+|-.+..+|..+.| ...|.++||+..||+..++...
T Consensus 12 ~~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~ 53 (231)
T 2qib_A 12 EERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHY 53 (231)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHH
Confidence 3455667777777777777 4689999999999999999754
No 276
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=25.06 E-value=54 Score=27.65 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
..+|-++..++..+.| ...|..+||+..|++.+++-.
T Consensus 5 r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 42 (189)
T 3geu_A 5 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYY 42 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 3445555556555555 558999999999999999864
No 277
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=24.99 E-value=81 Score=27.15 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 382 ~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~ 43 (212)
T 3rh2_A 6 DKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYH 43 (212)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 455566666666666 5589999999999999999764
No 278
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=24.99 E-value=62 Score=27.52 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..+|..+.| ...|..+||+..||+.++|...
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 58 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhh
Confidence 344566666667666666 5689999999999999999764
No 279
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.94 E-value=1.1e+02 Score=26.42 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 382 ~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.+|-.+..+|..+.| ...|.++||+..||+..++-..
T Consensus 14 ~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~ 51 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAA 51 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHH
Confidence 345556666666666 6689999999999999999764
No 280
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.84 E-value=40 Score=28.35 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIR 416 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk 416 (459)
+...+|-.+..++..+.| ...|.++||+..||+.+++.
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y 50 (199)
T 3on2_A 12 SLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPS 50 (199)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CC
T ss_pred HHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHH
Confidence 344566667777767667 45899999999999998874
No 281
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=24.84 E-value=95 Score=26.90 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
..+|-.+..+|..+.| ...|.++||+..||+.+++-.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (219)
T 2w53_A 13 REGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYW 50 (219)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhh
Confidence 4556666666666666 568999999999999999864
No 282
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=24.73 E-value=1.1e+02 Score=26.59 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-++..+|..+.| ...|.++||+..|++..++...
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~ 62 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRY 62 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 445667777777777777 4589999999999999999754
No 283
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.67 E-value=1e+02 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
..+|-++..++..+.| ...|.++||+..|++.+++...
T Consensus 11 r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~ 49 (203)
T 2np5_A 11 PERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHH 49 (203)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHH
Confidence 3456666666666666 5689999999999999999754
No 284
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=24.63 E-value=75 Score=27.03 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..+|..+.| ...|.++||+..|++.+++...
T Consensus 10 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 49 (193)
T 2dg8_A 10 RRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYH 49 (193)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhhee
Confidence 34566666666666666 5789999999999999999753
No 285
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=24.59 E-value=45 Score=29.97 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.+.+..+||..||+|..+|+..+.....
T Consensus 212 ~g~~~~eia~~l~~s~~tv~~~l~~i~~ 239 (258)
T 3p7n_A 212 SGLRNKEVAARLGLSEKTVKMHRGLVME 239 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4679999999999999999998776544
No 286
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.58 E-value=90 Score=26.89 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
....+|-.+..+|..+.| ...|.++||+..|++.+++..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~ 51 (200)
T 2hyj_A 12 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHK 51 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHT
T ss_pred ccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHH
Confidence 344566666666666666 668999999999999999863
No 287
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=24.56 E-value=1.1e+02 Score=27.13 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHGK-YPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lgr-~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.|- ..|..+||+..||+.+++...
T Consensus 44 ~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~ 84 (236)
T 3q0w_A 44 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFY 84 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHH
No 288
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=24.54 E-value=1.2e+02 Score=27.39 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|..+||+..||+..++...
T Consensus 48 ~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~y 88 (260)
T 2of7_A 48 RTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHH
Confidence 445566677777777667 5689999999999999999754
No 289
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=24.50 E-value=1.3e+02 Score=26.78 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSL-AEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~-e~Vk~~l~~ar 423 (459)
..|.++||..+|++. ++|-.++...+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~ 195 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLK 195 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 579999999999999 89998888664
No 290
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=24.38 E-value=70 Score=25.94 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|..++...
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 4799999999999999999887754
No 291
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=24.31 E-value=1.3e+02 Score=26.71 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..+|..+.| ...|..+||+..|++.++|...
T Consensus 8 ~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~h 47 (235)
T 2fbq_A 8 TVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYH 47 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 44566677777777777 5789999999999999998753
No 292
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=24.29 E-value=64 Score=27.98 Aligned_cols=40 Identities=5% Similarity=-0.040 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~ 68 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNY 68 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHh
Confidence 445566777777777767 5699999999999999998754
No 293
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=24.24 E-value=67 Score=26.98 Aligned_cols=39 Identities=26% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..+|..+.| ...|..+||+..|++.+++...
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (186)
T 2jj7_A 8 TMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYY 47 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhh
Confidence 34456666666666656 4589999999999999999764
No 294
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=24.16 E-value=56 Score=27.60 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
+...+|-.+..++..+.| ...|.++||+..||+.+++
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~ 48 (204)
T 3eup_A 11 RTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSI 48 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHH
No 295
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.09 E-value=38 Score=32.25 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
.+.+|..+||+..|+|..||..+++-
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 35689999999999999999988864
No 296
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=24.09 E-value=1.3e+02 Score=27.19 Aligned_cols=27 Identities=30% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+.|.++||+.+|++...|.+++....-
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~L 78 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLDL 78 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 679999999999999999999887653
No 297
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=23.86 E-value=1.4e+02 Score=26.38 Aligned_cols=39 Identities=23% Similarity=0.138 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~ 47 (213)
T 3ni7_A 8 MRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 44566667777777777 6789999999999999998754
No 298
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=23.81 E-value=94 Score=25.75 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...+..|||+.+|++..+|..++...
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 50 EALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp SCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46899999999999999999887754
No 299
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=23.80 E-value=1.4e+02 Score=26.36 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.|.++||..+|++.++|-.++...+.
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47899999999999999999887654
No 300
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=23.78 E-value=90 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|.++||+..||+.++|-..
T Consensus 24 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~y 64 (214)
T 2oer_A 24 ELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQY 64 (214)
T ss_dssp HHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHh
Confidence 344566666666666666 5689999999999999999754
No 301
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=23.76 E-value=1.3e+02 Score=26.50 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 378 ~e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
.....+|-.+..+|..+.| ...|.++||+..||+..++...
T Consensus 38 ~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~ 79 (214)
T 2guh_A 38 EQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKY 79 (214)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHH
Confidence 4455667777777777777 5589999999999999999764
No 302
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.72 E-value=86 Score=26.31 Aligned_cols=26 Identities=8% Similarity=-0.072 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+.+..+||+.+||+..+|...+...+
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57999999999999999998877654
No 303
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=23.68 E-value=1.2e+02 Score=24.20 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
+.|..++|+.+|++..+|..+.+
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999988765
No 304
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=23.67 E-value=55 Score=29.79 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+-|+..|||+.+|+|..+|+.++...
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45799999999999999999998864
No 305
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.47 E-value=44 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
.+.+|..+||+..|+|..||..+++-
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 45789999999999999999988864
No 306
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=23.44 E-value=57 Score=30.37 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 383 kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
.+.++...+...+...++.++||+.+|+|...+..+.+
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~ 41 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45566666666777789999999999999998887654
No 307
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=23.37 E-value=1.4e+02 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
.|.++||..+|++.++|-.++...+.
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 58999999999999999998887653
No 308
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=23.34 E-value=49 Score=28.60 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.+|.++||..+|++.++|-.+++..+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 36899999999999999999888654
No 309
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=23.33 E-value=1.1e+02 Score=26.87 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| ...|..+||+..|++.++|...
T Consensus 15 ~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~ 54 (208)
T 3v6g_A 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYY 54 (208)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHH
Confidence 34556666677666667 5689999999999999999754
No 310
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=23.07 E-value=2.1e+02 Score=23.16 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+...+..|||+.+|++..+|..++...
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHH
Confidence 446799999999999999999887754
No 311
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.95 E-value=1.1e+02 Score=25.63 Aligned_cols=25 Identities=20% Similarity=-0.001 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|+|..+|...++..
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L 41 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999887764
No 312
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=22.88 E-value=75 Score=29.66 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.+|..+...+...-+....|..+--...|-+|||+.+|++..+|+.-+.+.
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~f 56 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYF 56 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHHH
Confidence 355555555555556666666554455799999999999999999877654
No 313
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=22.67 E-value=1.1e+02 Score=26.55 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 381 i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
..+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 7 r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 45 (228)
T 3nnr_A 7 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYH 45 (228)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhc
Confidence 3456666666666667 5589999999999999999764
No 314
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=22.63 E-value=65 Score=27.72 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+..++.+|||+.+|+|...|..++...+
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~L~ 55 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLK 55 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457999999999999999999877543
No 315
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.56 E-value=1.2e+02 Score=26.35 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~y 49 (209)
T 2gfn_A 9 ERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHY 49 (209)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhc
Confidence 344556666666666666 5689999999999999999754
No 316
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=22.46 E-value=4e+02 Score=23.43 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=25.6
Q ss_pred HcCCCCCHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 394 ~lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
..|...+.+|||+..|+++.+++...+....
T Consensus 161 ~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 161 LEGEKRTQREVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp HTTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3466679999999999999999988776554
No 317
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.37 E-value=56 Score=27.93 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
...+|-++..+|..+.| ...|..+||+..||+.+++-.
T Consensus 14 ~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 52 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYN 52 (195)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHH
Confidence 44566666677766666 458999999999999998764
No 318
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=22.33 E-value=29 Score=34.08 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.5
Q ss_pred CCChHHHHHHHHHhHHHHH
Q 012638 236 LTIARNEAEMSKGVQVVAN 254 (459)
Q Consensus 236 lLt~~eE~eL~~~i~~~~~ 254 (459)
|||.+.|++++++|..|..
T Consensus 1 LLTREgEI~IAKRIE~G~~ 19 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGIN 19 (339)
T ss_dssp ---CCTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 7999999999999998854
No 319
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=22.29 E-value=59 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 15 ~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 15 SRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHH
Confidence 44556666666666666 5689999999999999999764
No 320
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=22.25 E-value=82 Score=26.15 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
....+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHH 54 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHH
Confidence 445566667677666666 4589999999999999999764
No 321
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=22.25 E-value=2.3e+02 Score=22.70 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|...+...
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999887754
No 322
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.17 E-value=58 Score=23.78 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 012638 399 PEDIEIAKYTGLSLAEIRSAS 419 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l 419 (459)
.|.+++|+.+||+..+|....
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 389999999999999998764
No 323
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.13 E-value=65 Score=26.24 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhccCCcccc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQ 430 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar~~~SLD~ 430 (459)
.++.|..|+|+.+||+..+|..+.+ .+..+|++.
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~-G~~~~s~~~ 58 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN-GARSITADT 58 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT-TSSCCCHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc-CCCCCCHHH
Confidence 4578999999999999999998875 333445554
No 324
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=22.09 E-value=78 Score=26.86 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 54 (215)
T 3e7q_A 14 QRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHH 54 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 445566666666666666 5789999999999999999754
No 325
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=21.95 E-value=1.6e+02 Score=23.54 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
+.|..++|+.+||+..+|..+.+
T Consensus 41 glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 41 GVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 57899999999999999887754
No 326
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=21.92 E-value=72 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.127 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|...+...
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999988764
No 327
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=21.91 E-value=72 Score=27.16 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 384 I~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
+..+...|..+.| ...|..+||+..||+.+++
T Consensus 30 l~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~ 62 (212)
T 3nxc_A 30 LQSLALMLESSDGSQRITTAKLAASVGVSEAAL 62 (212)
T ss_dssp HHHHHHHHHC------CCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhcCChhhcCHHHHHHHhCCChhHH
No 328
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=21.90 E-value=53 Score=30.97 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.+|..+||+..|+|..||..+++-.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~ 26 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGN 26 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 3799999999999999999998753
No 329
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=21.83 E-value=56 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=22.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|.++||..+|++.++|-.+++..+
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6899999999999999999888654
No 330
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=21.82 E-value=80 Score=26.66 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 20 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 60 (203)
T 3mnl_A 20 ERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRY 60 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHH
No 331
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=21.76 E-value=1.7e+02 Score=22.29 Aligned_cols=35 Identities=31% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 388 RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 388 ~~~L~~~lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.-.+.....++.|.-|+|...|+|.++.+.++...
T Consensus 8 LLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqL 42 (68)
T 3i71_A 8 LLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQL 42 (68)
T ss_dssp HHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHH
Confidence 33445566788999999999999999999987753
No 332
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=21.76 E-value=1.5e+02 Score=24.34 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+..++..|||+.+|++..+|..+++..
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 456899999999999999999887754
No 333
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.72 E-value=58 Score=30.86 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
+|..+||+..|+|..||..+++-.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~ 24 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKT 24 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCc
Confidence 588999999999999999998743
No 334
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=21.53 E-value=3.6e+02 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.5
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
.+...+..|||+.+|++..+|-.++...
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3556788999999999999998887754
No 335
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=21.52 E-value=1.2e+02 Score=25.49 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
++.|.+|+|+.+|++...+..+-+
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 467888888888888877776543
No 336
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=21.49 E-value=1.1e+02 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
+...+|-++..+|..+.| ...|..+||+..||+.+++...
T Consensus 43 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~ 83 (255)
T 3g1o_A 43 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFY 83 (255)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHH
No 337
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.37 E-value=62 Score=27.72 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~ 417 (459)
+...+|-++..++..+.| ...|..+||+..||+.+++..
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 13 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGG
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 455667777777777777 458999999999999998764
No 338
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=21.30 E-value=85 Score=23.81 Aligned_cols=25 Identities=20% Similarity=-0.029 Sum_probs=22.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHhhcc
Q 012638 400 EDIEIAKYTGLSLAEIRSASECLRI 424 (459)
Q Consensus 400 T~eEIAe~LGIS~e~Vk~~l~~ar~ 424 (459)
+..++|+.||++...|...++..+.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r~ 39 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGLP 39 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 9999999999999999998876543
No 339
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=21.16 E-value=63 Score=24.80 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 396 gr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+...+..|||+.+|++..+|...+....
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3357999999999999999998877653
No 340
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=21.15 E-value=1.5e+02 Score=28.49 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=55.8
Q ss_pred HHHHHhCCCCchHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhc
Q 012638 261 TLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340 (459)
Q Consensus 261 ~l~~~~gr~pt~~ewa~a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkry~g~g~d~EDLIQEG~IGLirAieKF 340 (459)
.+.+-+|+.|++++-...++ .+.|. -.|-++++.+|..+.|.+ +.+|| ++.+.-.+|
T Consensus 22 r~~eW~~~AP~LEediAlan--------------ialDe--lGhar~ly~~a~~l~G~~-~~D~L------a~~R~~~~f 78 (249)
T 1otk_A 22 RLGEWCGHAPELEIDLALAN--------------IGLDL--LGQARNFLSYAAELAGEG-DEDTL------AFTRDERQF 78 (249)
T ss_dssp HHHTTTTTSSSHHHHHHHHH--------------HHHHH--HHHHHHHHHHHHHHHTSC-CHHHH------HHSCCGGGC
T ss_pred ccchHHhhCCChHHHHHHHH--------------HHHHH--HHHHHHHHHHHHHccCCC-cHHHH------HHhcCHHHh
Confidence 34456789999877443322 12222 245677888888776655 67777 478888888
Q ss_pred CCC--CCCchhhHHHHHHHHHHHHHHH
Q 012638 341 DHT--RGYKFSTYVQYWIRKSISKMVA 365 (459)
Q Consensus 341 Dp~--kG~rFSTYa~~wIrnaI~d~Lr 365 (459)
... -...+.+|+..++++.+.+...
T Consensus 79 rn~~l~e~P~gdwa~ti~r~~l~d~~~ 105 (249)
T 1otk_A 79 SNLLLVEQPNGNFADTIARQYFIDAWH 105 (249)
T ss_dssp CCCGGGGSCCCSHHHHHHHHHHHHHHH
T ss_pred hccHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 654 3456789999999999988664
No 341
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=21.07 E-value=1.4e+02 Score=21.30 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 400 EDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 400 T~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
+..++|+.+|++...|...++-.+
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~~ 38 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGR 38 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 999999999999999998886443
No 342
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.04 E-value=73 Score=25.05 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~ 421 (459)
++.|..++|+.+||+..+|..+..-
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4679999999999999999887764
No 343
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=20.93 E-value=4.1e+02 Score=23.01 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
.+.+..+||+.||++..+|..++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 467999999999999999998775
No 344
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=20.92 E-value=1.4e+02 Score=25.98 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHH
Q 012638 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (459)
Q Consensus 380 ~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~Vk~~ 418 (459)
...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~ 68 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYH 68 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhhc
Confidence 45667777777777767 5789999999999999999754
No 345
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=20.86 E-value=89 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
..+..|||+.+|++..+|...++...
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L~ 68 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVLE 68 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57999999999999999998877543
No 346
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=20.74 E-value=76 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~ 420 (459)
.+.|.+++|+.+||+..+|..+.+
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 468999999999999999988765
No 347
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=20.72 E-value=2.3e+02 Score=23.34 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 398 ~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
..+..|||+.+|++..+|..++...
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999887754
No 348
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=20.69 E-value=2.1e+02 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.021 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 012638 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~Vk~~l~~a 422 (459)
...|..|||+.+|++..+|..++...
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45799999999999999999887764
No 349
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.67 E-value=67 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHH
Q 012638 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (459)
Q Consensus 379 e~i~kI~ka~~~L~~~lg-r~PT~eEIAe~LGIS~e~V 415 (459)
+...+|-.+..+|..+.| ...|..+||+..||+.+++
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 53 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAV 53 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChh
No 350
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=20.49 E-value=1.8e+02 Score=22.45 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHH
Q 012638 397 KYPEDIEIAKYTGLSLAE----IRSASE 420 (459)
Q Consensus 397 r~PT~eEIAe~LGIS~e~----Vk~~l~ 420 (459)
++.|.+|+|+.+|++..+ |..+.+
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 367999999999999999 766654
No 351
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=20.45 E-value=61 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 399 PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
.|.++||..+|++.++|-.++...+
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~ 188 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALA 188 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5899999999999999999888654
No 352
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=20.43 E-value=1.1e+02 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=25.1
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 012638 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (459)
Q Consensus 395 lgr~PT~eEIAe~LGIS~e~Vk~~l~~ar 423 (459)
-+...|.+|||+.||||...|.+.++..+
T Consensus 16 ~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~ 44 (323)
T 3rkx_A 16 KPNYISGQSIAESLNISRTAVKKVIDQLK 44 (323)
T ss_dssp TTSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36678999999999999999999877654
No 353
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=20.27 E-value=2e+02 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHhC--CCHHHHHHHHHhh
Q 012638 396 GKYPEDIEIAKYTG--LSLAEIRSASECL 422 (459)
Q Consensus 396 gr~PT~eEIAe~LG--IS~e~Vk~~l~~a 422 (459)
+...+.++||+.+| ++...|+.++...
T Consensus 20 ~~pvs~~~La~~~~~~~~~~~v~~~l~~L 48 (162)
T 1t6s_A 20 EEPVNLQTLSQITAHKFTPSELQEAVDEL 48 (162)
T ss_dssp SSCBCHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCcCCCHHHHHHHHHHH
Confidence 77889999999999 9999999887654
Done!