Query 012639
Match_columns 459
No_of_seqs 247 out of 1233
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1321 Protoheme ferro-lyase 100.0 6E-107 1E-111 793.4 32.8 372 61-439 15-392 (395)
2 PLN02449 ferrochelatase 100.0 9E-101 2E-105 804.6 45.0 388 70-457 76-483 (485)
3 COG0276 HemH Protoheme ferro-l 100.0 2.4E-93 5.2E-98 714.4 35.8 317 80-408 2-319 (320)
4 PF00762 Ferrochelatase: Ferro 100.0 1.5E-91 3.3E-96 708.2 31.5 316 83-407 1-316 (316)
5 TIGR00109 hemH ferrochelatase. 100.0 1.5E-88 3.3E-93 688.3 36.4 320 80-407 2-321 (322)
6 PRK12435 ferrochelatase; Provi 100.0 4.8E-84 1E-88 651.9 36.2 302 80-408 1-308 (311)
7 PRK00035 hemH ferrochelatase; 100.0 2.9E-82 6.3E-87 644.5 38.8 322 81-410 3-326 (333)
8 cd03411 Ferrochelatase_N Ferro 100.0 1.6E-43 3.5E-48 325.4 16.7 159 84-247 1-159 (159)
9 cd00419 Ferrochelatase_C Ferro 100.0 2.8E-38 6.1E-43 283.5 15.7 134 252-390 1-135 (135)
10 PF06180 CbiK: Cobalt chelatas 99.7 8.4E-17 1.8E-21 159.2 14.8 194 184-407 57-261 (262)
11 PRK02395 hypothetical protein; 99.7 1.7E-15 3.7E-20 151.4 24.0 235 146-409 7-262 (279)
12 COG4822 CbiK Cobalamin biosynt 99.6 1E-13 2.3E-18 131.3 18.7 187 188-410 63-260 (265)
13 PLN02757 sirohydrochlorine fer 99.3 4.2E-11 9.1E-16 110.1 15.7 139 269-430 12-152 (154)
14 cd03409 Chelatase_Class_II Cla 99.3 1.1E-11 2.3E-16 104.4 10.9 88 272-376 1-88 (101)
15 cd03409 Chelatase_Class_II Cla 99.2 9E-11 2E-15 98.8 11.1 75 150-229 13-89 (101)
16 COG2138 Sirohydrochlorin ferro 99.2 1.6E-09 3.5E-14 106.7 18.9 228 147-408 9-241 (245)
17 cd03414 CbiX_SirB_C Sirohydroc 98.9 2.6E-08 5.5E-13 86.5 14.2 114 272-406 2-116 (117)
18 PRK00923 sirohydrochlorin coba 98.9 1.8E-08 3.8E-13 89.0 12.4 117 271-406 2-126 (126)
19 PLN02757 sirohydrochlorine fer 98.9 6.2E-08 1.3E-12 89.2 15.2 115 146-265 19-135 (154)
20 cd03414 CbiX_SirB_C Sirohydroc 98.8 6.1E-08 1.3E-12 84.2 13.2 109 147-261 7-116 (117)
21 PRK00923 sirohydrochlorin coba 98.8 3E-08 6.5E-13 87.6 11.1 110 147-261 8-126 (126)
22 cd03415 CbiX_CbiC Archaeal sir 98.8 1.1E-07 2.5E-12 84.5 13.1 114 271-405 1-124 (125)
23 cd03415 CbiX_CbiC Archaeal sir 98.8 1.2E-07 2.6E-12 84.4 12.8 109 146-260 6-124 (125)
24 cd03412 CbiK_N Anaerobic cobal 98.5 1.4E-06 3E-11 77.6 12.9 105 149-260 9-125 (127)
25 PRK05782 bifunctional sirohydr 98.5 5.6E-06 1.2E-10 85.1 16.2 119 271-410 7-135 (335)
26 PRK05782 bifunctional sirohydr 98.4 2.1E-06 4.6E-11 88.1 13.0 113 146-264 12-134 (335)
27 cd03412 CbiK_N Anaerobic cobal 98.4 5.1E-06 1.1E-10 74.0 13.8 119 272-406 2-126 (127)
28 PF01903 CbiX: CbiX; InterPro 98.4 4.1E-07 8.9E-12 77.4 5.4 92 160-256 12-105 (105)
29 cd03413 CbiK_C Anaerobic cobal 98.4 2.3E-06 5E-11 73.7 9.7 96 272-389 2-102 (103)
30 cd03416 CbiX_SirB_N Sirohydroc 98.3 6.7E-06 1.5E-10 69.6 11.5 99 273-390 2-101 (101)
31 PF01903 CbiX: CbiX; InterPro 98.3 1.1E-06 2.4E-11 74.8 6.4 96 293-401 9-105 (105)
32 cd03416 CbiX_SirB_N Sirohydroc 98.1 5.1E-05 1.1E-09 64.2 11.0 93 147-244 6-100 (101)
33 TIGR00109 hemH ferrochelatase. 97.7 0.00055 1.2E-08 70.2 12.9 109 148-262 205-321 (322)
34 PRK00035 hemH ferrochelatase; 97.7 0.00069 1.5E-08 69.5 13.4 110 276-408 66-181 (333)
35 PRK12435 ferrochelatase; Provi 97.6 0.00089 1.9E-08 68.4 12.5 141 291-441 54-211 (311)
36 PLN02449 ferrochelatase 97.5 0.0018 3.9E-08 69.8 13.9 114 148-264 294-415 (485)
37 PRK02395 hypothetical protein; 97.5 0.0014 3.1E-08 65.7 12.5 111 147-265 142-263 (279)
38 cd03413 CbiK_C Anaerobic cobal 97.4 0.00067 1.5E-08 58.4 7.4 61 146-209 6-66 (103)
39 COG2138 Sirohydrochlorin ferro 97.3 0.001 2.3E-08 65.8 8.9 117 272-409 4-120 (245)
40 PF00762 Ferrochelatase: Ferro 97.2 0.003 6.5E-08 64.7 11.6 109 289-410 64-178 (316)
41 COG0276 HemH Protoheme ferro-l 97.2 0.004 8.7E-08 63.8 12.2 130 297-441 76-221 (320)
42 cd00419 Ferrochelatase_C Ferro 96.2 0.056 1.2E-06 48.7 10.9 59 149-209 36-102 (135)
43 PF06180 CbiK: Cobalt chelatas 95.3 0.13 2.8E-06 51.5 10.3 105 147-263 148-262 (262)
44 KOG1321 Protoheme ferro-lyase 95.1 0.21 4.7E-06 51.0 10.9 77 330-409 138-219 (395)
45 cd03411 Ferrochelatase_N Ferro 94.2 0.41 8.8E-06 44.1 10.0 52 297-355 71-122 (159)
46 COG4822 CbiK Cobalamin biosynt 91.0 2.9 6.3E-05 40.9 11.0 86 175-264 169-259 (265)
47 TIGR00640 acid_CoA_mut_C methy 83.4 6 0.00013 35.5 7.9 104 85-203 4-110 (132)
48 PF05990 DUF900: Alpha/beta hy 81.7 18 0.0004 35.3 11.3 133 252-401 2-148 (233)
49 COG0621 MiaB 2-methylthioadeni 80.2 14 0.00031 39.8 10.6 142 191-354 182-334 (437)
50 PRK10481 hypothetical protein; 78.7 29 0.00063 34.1 11.4 181 99-364 17-201 (224)
51 PRK05628 coproporphyrinogen II 76.6 1E+02 0.0022 32.1 16.9 141 247-403 35-184 (375)
52 PF06309 Torsin: Torsin; Inte 73.7 12 0.00026 33.6 6.7 67 244-323 27-93 (127)
53 PF01297 TroA: Periplasmic sol 72.7 41 0.0009 32.8 11.0 195 148-403 29-249 (256)
54 PF04748 Polysacc_deac_2: Dive 72.5 71 0.0015 31.0 12.3 88 173-260 20-117 (213)
55 TIGR00539 hemN_rel putative ox 70.5 1.4E+02 0.003 31.0 16.9 136 248-400 30-174 (360)
56 cd01994 Alpha_ANH_like_IV This 65.7 1.3E+02 0.0027 28.7 14.9 126 191-351 16-143 (194)
57 COG2861 Uncharacterized protei 65.7 1.3E+02 0.0027 30.2 12.3 168 173-356 52-242 (250)
58 COG0761 lytB 4-Hydroxy-3-methy 61.3 13 0.00029 37.8 4.9 61 219-285 19-82 (294)
59 PRK05660 HemN family oxidoredu 60.8 2.2E+02 0.0047 29.8 16.6 131 248-395 37-175 (378)
60 PRK07379 coproporphyrinogen II 53.8 2.9E+02 0.0064 29.1 16.8 133 248-399 47-188 (400)
61 cd03174 DRE_TIM_metallolyase D 52.2 1.3E+02 0.0029 29.1 10.2 42 166-207 123-168 (265)
62 PRK03906 mannonate dehydratase 50.9 25 0.00055 37.3 5.2 66 328-395 6-71 (385)
63 cd01020 TroA_b Metal binding p 50.7 1.5E+02 0.0031 29.4 10.3 194 153-402 40-255 (264)
64 COG1453 Predicted oxidoreducta 49.8 3.5E+02 0.0076 28.8 14.3 51 315-367 167-221 (391)
65 PRK14464 ribosomal RNA large s 49.4 1.9E+02 0.0042 30.2 11.3 109 272-405 144-269 (344)
66 TIGR00538 hemN oxygen-independ 48.6 3.7E+02 0.0081 28.8 16.8 141 249-405 81-229 (455)
67 cd07910 MiaE MiaE tRNA-modifyi 48.6 4.6 0.0001 38.3 -0.7 58 238-300 38-95 (180)
68 COG0635 HemN Coproporphyrinoge 46.8 3.8E+02 0.0083 28.6 13.3 141 247-404 64-215 (416)
69 PRK13347 coproporphyrinogen II 46.2 4.1E+02 0.0088 28.6 16.5 140 248-403 81-228 (453)
70 cd01018 ZntC Metal binding pro 46.0 3.1E+02 0.0066 27.1 13.3 132 242-403 112-261 (266)
71 PRK09426 methylmalonyl-CoA mut 45.9 81 0.0018 36.2 8.5 109 81-203 580-690 (714)
72 COG4750 LicC CTP:phosphocholin 45.5 24 0.00052 34.3 3.5 48 147-209 9-56 (231)
73 PRK10076 pyruvate formate lyas 44.9 1.2E+02 0.0025 29.4 8.4 35 371-405 119-156 (213)
74 PRK08599 coproporphyrinogen II 44.8 3.8E+02 0.0082 27.8 16.8 140 248-405 31-178 (377)
75 COG1509 KamA Lysine 2,3-aminom 43.9 2.7E+02 0.0058 29.5 11.1 105 289-405 167-278 (369)
76 PTZ00322 6-phosphofructo-2-kin 43.1 1.5E+02 0.0032 33.6 10.1 49 145-196 437-487 (664)
77 cd03174 DRE_TIM_metallolyase D 42.9 3.2E+02 0.0069 26.4 14.3 147 188-362 77-234 (265)
78 PF08645 PNK3P: Polynucleotide 42.6 68 0.0015 29.5 6.1 63 328-390 28-92 (159)
79 COG0406 phoE Broad specificity 41.8 2.9E+02 0.0063 25.7 11.4 53 149-206 26-81 (208)
80 TIGR03822 AblA_like_2 lysine-2 40.6 4.2E+02 0.0091 27.1 13.1 84 317-405 170-256 (321)
81 TIGR00695 uxuA mannonate dehyd 40.2 48 0.001 35.4 5.2 66 328-395 6-71 (394)
82 cd07948 DRE_TIM_HCS Saccharomy 40.0 3.9E+02 0.0085 26.6 13.9 149 184-361 71-227 (262)
83 PF04273 DUF442: Putative phos 39.7 1.1E+02 0.0023 26.7 6.5 65 334-404 16-83 (110)
84 KOG1322 GDP-mannose pyrophosph 39.0 1.1E+02 0.0025 32.0 7.5 87 176-278 35-121 (371)
85 cd06595 GH31_xylosidase_XylS-l 35.8 2.8E+02 0.006 28.0 9.8 69 331-407 73-145 (292)
86 PF08915 tRNA-Thr_ED: Archaea- 35.6 1.3E+02 0.0029 27.4 6.6 46 341-387 67-115 (138)
87 PF13684 Dak1_2: Dihydroxyacet 35.6 54 0.0012 33.7 4.7 46 162-208 107-152 (313)
88 PF13380 CoA_binding_2: CoA bi 35.0 52 0.0011 28.5 3.9 38 333-381 67-104 (116)
89 KOG2233 Alpha-N-acetylglucosam 34.9 3.4E+02 0.0073 30.1 10.4 134 188-352 157-311 (666)
90 PRK08898 coproporphyrinogen II 34.4 4.2E+02 0.0091 27.9 11.3 97 248-361 52-148 (394)
91 cd02072 Glm_B12_BD B12 binding 34.3 86 0.0019 28.2 5.2 79 112-203 29-113 (128)
92 TIGR00262 trpA tryptophan synt 33.6 4.9E+02 0.011 25.8 18.0 209 84-352 11-227 (256)
93 PRK09856 fructoselysine 3-epim 33.5 4.5E+02 0.0099 25.4 16.4 154 182-349 10-176 (275)
94 TIGR00762 DegV EDD domain prot 33.0 5E+02 0.011 25.8 12.6 108 181-307 58-181 (275)
95 TIGR02631 xylA_Arthro xylose i 32.8 2.3E+02 0.005 29.9 9.0 65 315-381 13-83 (382)
96 PF06925 MGDG_synth: Monogalac 32.7 2.6E+02 0.0055 25.5 8.3 37 159-195 4-43 (169)
97 PRK08208 coproporphyrinogen II 32.6 6.4E+02 0.014 26.9 16.6 16 333-348 178-193 (430)
98 PRK04147 N-acetylneuraminate l 32.4 2.5E+02 0.0054 28.1 8.9 58 166-227 66-126 (293)
99 PLN02591 tryptophan synthase 32.2 4E+02 0.0086 26.6 10.0 112 279-402 36-153 (250)
100 PF13204 DUF4038: Protein of u 32.0 2.7E+02 0.0059 28.1 9.0 86 187-281 90-188 (289)
101 COG2896 MoaA Molybdenum cofact 32.0 4.1E+02 0.0088 27.7 10.3 101 293-405 45-178 (322)
102 PF08029 HisG_C: HisG, C-termi 31.9 43 0.00093 27.3 2.6 25 183-207 48-72 (75)
103 PRK06886 hypothetical protein; 31.7 6E+02 0.013 26.3 12.4 62 287-355 184-245 (329)
104 PRK06582 coproporphyrinogen II 31.6 6.4E+02 0.014 26.6 16.5 167 146-319 68-246 (390)
105 cd02167 NMNAT_NadR Nicotinamid 31.4 4.1E+02 0.0089 24.3 9.4 94 181-279 7-109 (158)
106 PRK13111 trpA tryptophan synth 31.3 4.9E+02 0.011 26.0 10.6 62 331-402 103-164 (258)
107 COG4782 Uncharacterized protei 31.1 2E+02 0.0043 30.5 7.9 139 242-401 94-245 (377)
108 PRK05452 anaerobic nitric oxid 30.5 7.4E+02 0.016 27.0 13.9 35 311-349 334-368 (479)
109 PRK12677 xylose isomerase; Pro 30.4 1.5E+02 0.0032 31.4 7.1 66 315-381 12-82 (384)
110 TIGR03821 AblA_like_1 lysine-2 30.2 2.2E+02 0.0048 29.2 8.1 67 335-405 193-262 (321)
111 TIGR03856 F420_MSMEG_2906 prob 29.8 2.8E+02 0.0061 27.3 8.5 84 271-365 151-242 (249)
112 PF00701 DHDPS: Dihydrodipicol 29.7 4E+02 0.0087 26.5 9.8 53 171-227 68-123 (289)
113 cd00951 KDGDH 5-dehydro-4-deox 29.7 1.9E+02 0.004 29.1 7.4 66 333-401 79-148 (289)
114 PF02645 DegV: Uncharacterised 29.6 2.9E+02 0.0062 27.5 8.7 59 183-249 61-122 (280)
115 PRK13125 trpA tryptophan synth 29.3 4.8E+02 0.01 25.5 10.0 62 333-401 89-150 (244)
116 cd00408 DHDPS-like Dihydrodipi 28.6 2.9E+02 0.0063 27.2 8.5 52 172-227 65-119 (281)
117 KOG0434 Isoleucyl-tRNA synthet 28.3 90 0.0019 35.8 5.0 115 237-358 39-184 (1070)
118 KOG0460 Mitochondrial translat 28.3 1.2E+02 0.0025 32.2 5.6 50 332-381 156-206 (449)
119 PRK03620 5-dehydro-4-deoxygluc 28.0 2.7E+02 0.0058 28.2 8.2 49 171-224 74-125 (303)
120 cd07940 DRE_TIM_IPMS 2-isoprop 27.4 6.1E+02 0.013 25.0 14.6 156 181-362 69-233 (268)
121 PRK14457 ribosomal RNA large s 27.0 7.4E+02 0.016 25.8 14.9 37 370-406 244-283 (345)
122 TIGR01019 sucCoAalpha succinyl 26.8 1.1E+02 0.0024 31.1 5.1 44 331-381 73-116 (286)
123 PRK15418 transcriptional regul 26.7 3.5E+02 0.0076 27.8 8.8 51 332-391 44-94 (318)
124 cd01017 AdcA Metal binding pro 26.5 6.4E+02 0.014 25.0 12.0 123 242-390 113-253 (282)
125 cd06592 GH31_glucosidase_KIAA1 26.4 1.5E+02 0.0033 29.9 6.2 100 293-407 29-151 (303)
126 PRK09057 coproporphyrinogen II 26.1 7.7E+02 0.017 25.7 15.8 140 248-404 34-181 (380)
127 PLN02417 dihydrodipicolinate s 26.0 3.6E+02 0.0077 27.0 8.6 63 159-225 56-121 (280)
128 PRK04147 N-acetylneuraminate l 26.0 2.2E+02 0.0048 28.5 7.2 68 331-401 82-156 (293)
129 PRK08207 coproporphyrinogen II 25.8 9E+02 0.02 26.5 15.1 176 146-325 224-421 (488)
130 COG1312 UxuA D-mannonate dehyd 25.7 80 0.0017 33.1 3.9 67 328-396 6-72 (362)
131 PF02633 Creatininase: Creatin 25.7 2.4E+02 0.0051 27.4 7.1 22 187-208 88-109 (237)
132 COG1350 Predicted alternative 25.6 2.2E+02 0.0047 30.1 6.9 65 138-210 67-138 (432)
133 TIGR00290 MJ0570_dom MJ0570-re 25.2 6.6E+02 0.014 24.6 14.7 120 191-351 17-140 (223)
134 PRK13111 trpA tryptophan synth 25.1 6.9E+02 0.015 24.9 13.3 105 85-206 14-125 (258)
135 PF07799 DUF1643: Protein of u 25.1 4.5E+02 0.0097 23.1 8.2 33 181-213 28-60 (136)
136 TIGR02313 HpaI-NOT-DapA 2,4-di 24.9 3.8E+02 0.0082 27.0 8.6 62 163-228 59-123 (294)
137 PRK14340 (dimethylallyl)adenos 24.9 8.8E+02 0.019 26.0 12.9 155 182-354 175-337 (445)
138 PRK12613 galactose-6-phosphate 24.8 1.7E+02 0.0038 26.7 5.5 76 354-431 3-90 (141)
139 TIGR03249 KdgD 5-dehydro-4-deo 24.3 2.7E+02 0.0058 28.0 7.4 66 333-401 84-153 (296)
140 PRK14331 (dimethylallyl)adenos 24.2 8.9E+02 0.019 25.8 12.2 157 182-354 172-334 (437)
141 TIGR00683 nanA N-acetylneurami 23.4 4.5E+02 0.0097 26.4 8.8 53 172-228 69-124 (290)
142 PRK09545 znuA high-affinity zi 23.4 7.9E+02 0.017 25.0 11.1 136 242-403 145-303 (311)
143 TIGR00674 dapA dihydrodipicoli 23.3 3.9E+02 0.0085 26.6 8.4 70 156-229 50-122 (285)
144 PRK05222 5-methyltetrahydropte 23.0 5.5E+02 0.012 29.8 10.4 152 203-386 423-600 (758)
145 TIGR02990 ectoine_eutA ectoine 22.8 1.5E+02 0.0032 29.3 5.1 90 327-433 102-198 (239)
146 TIGR03599 YloV DAK2 domain fus 22.7 1.3E+02 0.0028 33.4 5.1 47 161-208 324-370 (530)
147 PRK07379 coproporphyrinogen II 22.6 9.2E+02 0.02 25.4 15.9 60 146-207 72-134 (400)
148 PF10087 DUF2325: Uncharacteri 22.3 4.5E+02 0.0097 21.7 8.5 47 347-401 49-95 (97)
149 PRK05678 succinyl-CoA syntheta 22.3 1.4E+02 0.0031 30.4 5.0 44 331-381 75-118 (291)
150 PRK10834 vancomycin high tempe 22.2 5.5E+02 0.012 25.6 8.9 102 252-385 64-167 (239)
151 cd00952 CHBPH_aldolase Trans-o 22.0 2.7E+02 0.0058 28.3 6.9 66 332-400 87-160 (309)
152 PF00532 Peripla_BP_1: Peripla 21.9 6.4E+02 0.014 24.8 9.5 77 156-248 16-92 (279)
153 PF03786 UxuA: D-mannonate deh 21.9 1E+02 0.0022 32.4 3.9 66 328-395 6-73 (351)
154 COG1636 Uncharacterized protei 21.7 3.3E+02 0.0071 26.5 6.8 104 331-449 13-123 (204)
155 cd00954 NAL N-Acetylneuraminic 21.6 6E+02 0.013 25.3 9.3 60 163-226 60-122 (288)
156 TIGR02717 AcCoA-syn-alpha acet 21.5 2.1E+02 0.0045 30.8 6.3 49 332-381 75-123 (447)
157 TIGR03279 cyano_FeS_chp putati 21.4 4.2E+02 0.009 28.8 8.4 78 273-358 142-226 (433)
158 PF08338 DUF1731: Domain of un 21.4 55 0.0012 24.3 1.3 17 178-194 31-47 (48)
159 PF03358 FMN_red: NADPH-depend 21.3 4.6E+02 0.0099 22.9 7.6 74 149-226 8-96 (152)
160 cd00954 NAL N-Acetylneuraminic 21.1 3.5E+02 0.0076 27.0 7.5 68 331-401 79-154 (288)
161 PRK14332 (dimethylallyl)adenos 21.0 1.1E+03 0.023 25.5 13.5 155 182-354 180-340 (449)
162 cd00408 DHDPS-like Dihydrodipi 20.8 8E+02 0.017 24.0 11.3 68 331-401 75-149 (281)
163 PRK11145 pflA pyruvate formate 20.8 5.6E+02 0.012 24.6 8.7 36 370-405 152-190 (246)
164 TIGR03455 HisG_C-term ATP phos 20.6 1E+02 0.0023 26.3 3.0 24 184-207 73-96 (100)
165 cd00950 DHDPS Dihydrodipicolin 20.4 8.3E+02 0.018 24.1 13.8 68 331-401 78-152 (284)
166 COG2108 Uncharacterized conser 20.3 6.7E+02 0.015 26.4 9.2 83 138-228 72-162 (353)
167 COG2217 ZntA Cation transport 20.2 88 0.0019 36.0 3.2 34 330-368 538-571 (713)
168 smart00729 Elp3 Elongator prot 20.1 3.7E+02 0.008 24.0 6.9 37 174-210 151-192 (216)
169 TIGR00238 KamA family protein. 20.0 3.5E+02 0.0077 27.9 7.4 68 334-405 209-279 (331)
No 1
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.5e-107 Score=793.38 Aligned_cols=372 Identities=49% Similarity=0.764 Sum_probs=350.5
Q ss_pred ccceeecCCccccccccc-ccCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhh
Q 012639 61 AGVATYGENAVEYESHAQ-AAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKS 139 (459)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~~~k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~ 139 (459)
.+.++++..+....+.+. ..++||||||||||||++++||.+||.|+|.|+|||+||+ ++|..|+++|+++|+||+
T Consensus 15 ~t~~~~~~s~~a~~~~~~~~~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~---~~Q~~lakfIak~RtPKv 91 (395)
T KOG1321|consen 15 STQLTISASSSATFSSSVAQKKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPA---FLQKTLAKFIAKRRTPKV 91 (395)
T ss_pred cCcccccCCccccccccccccCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCH---HHHhhHHHHHHHhcCchH
Confidence 344445544333333322 2456999999999999999999999999999999999996 579999999999999999
Q ss_pred HHhhhccCCCCchHHHHHHHHHHHHHHHHhcC---CCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCCh
Q 012639 140 KEGYAAIGGGSPLRKITDEQAQALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTT 216 (459)
Q Consensus 140 ~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~~---~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Tt 216 (459)
+++|+.|||||||+.||+.|++.|++.|++.. .++++|+|||||+|+++|+++||+++|++|+|++|+||||||+|+
T Consensus 92 qe~Y~~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTs 171 (395)
T KOG1321|consen 92 QEQYREIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTS 171 (395)
T ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecC
Confidence 99999999999999999999999999999986 689999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCC--CceEEEEeeCCCchhhccccCCccHH
Q 012639 217 GSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKP--EEVMIFFSAHGVPVSYVEKAGDPYRD 294 (459)
Q Consensus 217 gs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~--~~~~LLFSaHGlP~~~v~~~GDpY~~ 294 (459)
||+++.+.+.+++.....+++|++|++|+.|++||++++++|++.|++|+++ ++++|+|||||+|+++|+ +||||+.
T Consensus 172 GSSln~l~r~~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn-~GDpY~~ 250 (395)
T KOG1321|consen 172 GSSLNELWRQFREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVN-AGDPYPA 250 (395)
T ss_pred cccHHHHHHHHHhcCcccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHh-cCCCcHH
Confidence 9999999999999887788999999999999999999999999999999875 899999999999999996 7999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHH
Q 012639 295 QMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKEL 374 (459)
Q Consensus 295 q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~ 374 (459)
|+++|+++||++| ++.|+|+++||||+||.+||+|+|+++|++|.++|.|++++|||+|++||+|||+|||+||++.
T Consensus 251 Ei~atv~~iMeeL---~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~ey~e~ 327 (395)
T KOG1321|consen 251 EIAATVDLIMEEL---KYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIEYIEE 327 (395)
T ss_pred HHHHHHHHHHHHh---ccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeehhhhHHHHHHHHhhHHHHHH
Confidence 9999999999999 7779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCChhHHHHHHHHHHH
Q 012639 375 ALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSI 439 (459)
Q Consensus 375 a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~~~~~~~~~~~~c~~c~~~~~~~~k~~~~~~ 439 (459)
+++.|++++.|+++||++|.||++|||+|.+||++.+++|.|+.++||+|.|+.|.++|.||++.
T Consensus 328 a~k~gve~~~Rv~sln~~p~fI~~lADlV~ehL~s~~~~s~q~l~~~~~~~ne~~~e~~s~~~~~ 392 (395)
T KOG1321|consen 328 ALKKGVENWKRVESLNGNPTFIEGLADLVAEHLKSNQAYSNQFLARCPGCSNEPCKEAKSWFGNH 392 (395)
T ss_pred HHHHhhhhheeccCCCCCccHHHHHHHHHHHhhhhhhhcchhhhhhCcCcCChhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999975
No 2
>PLN02449 ferrochelatase
Probab=100.00 E-value=9.1e-101 Score=804.56 Aligned_cols=388 Identities=71% Similarity=1.127 Sum_probs=347.5
Q ss_pred cccccccccccCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCC
Q 012639 70 AVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGG 149 (459)
Q Consensus 70 ~~~~~~~~~~~~~k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~Iggg 149 (459)
....+++.+.+++|+||||+|||||++++||++||+|||+|++||++|+++|++|++|+++|+++|++|++++|++||||
T Consensus 76 ~~~~~~~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGg 155 (485)
T PLN02449 76 DEAVADHPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGG 155 (485)
T ss_pred cccccccccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCC
Confidence 44556666778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHH
Q 012639 150 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 229 (459)
Q Consensus 150 SPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~ 229 (459)
|||+.+|++|+++|++.|++.+.+++|++|||||+|+++|++++|+++|+++||++|||||||.+|+||+++.+.++.++
T Consensus 156 SPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~ 235 (485)
T PLN02449 156 SPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 235 (485)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhh
Confidence 99999999999999999988777899999999999999999999999999999999999999999999999999998877
Q ss_pred hccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhh
Q 012639 230 DAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKD 309 (459)
Q Consensus 230 ~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~ 309 (459)
......+++++|++|++||+||+|++++|++++++++++++++|||||||+|+++++++||||++||++|+++|+++|..
T Consensus 236 ~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~ 315 (485)
T PLN02449 236 DEYLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKA 315 (485)
T ss_pred cccccCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCC
Confidence 54434568999999999999999999999999988766667899999999999999667999999999999999999943
Q ss_pred cCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCC
Q 012639 310 RGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPAL 389 (459)
Q Consensus 310 ~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~L 389 (459)
++..++|+++||||+||.+||+|+|+|+|++|+++|+|+|+|+|||||+||+|||||||+|++++|++.|+++|.|+|||
T Consensus 316 ~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~L 395 (485)
T PLN02449 316 RGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPAL 395 (485)
T ss_pred CCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCC
Confidence 32226899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCc--cccCCCCCCCCCCCCChhHHHHHHHH------------------HHHHHHHHHhChh
Q 012639 390 NCTPSFITDLADAVIEALPSA--LAMSAPKNISQEDDHNPVRYAIKMFF------------------GSILAFVLFFSPR 449 (459)
Q Consensus 390 Nd~p~fi~aLadlV~e~l~~~--~~~~~~~~~~c~~c~~~~~~~~k~~~------------------~~~~~~~~~~~~~ 449 (459)
|+||.||++|+++|.+++.+. -.++....-.|..|.-......+++- ..+|+|+.||+++
T Consensus 396 N~~p~FI~~La~lV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (485)
T PLN02449 396 GCEPTFISDLADAVIEALPYVGAMAVSNLEARQSLVPLGSVEELLATYDSQRRELPPVAVWEWGWTKAAMLAVLLLLVLE 475 (485)
T ss_pred CCCHHHHHHHHHHHHHHhhcccccccccCCCcccchhhcchHHHHhhhhhccccCCCchhhhhcccchHHHHHHHHHHHH
Confidence 999999999999999998852 23333223334444443334444442 6799999999999
Q ss_pred HHHHhhhc
Q 012639 450 MINAFRNQ 457 (459)
Q Consensus 450 ~~~~~~~~ 457 (459)
+++.+.+.
T Consensus 476 ~~~~~~~~ 483 (485)
T PLN02449 476 VTSGFGNL 483 (485)
T ss_pred HHcCCCcC
Confidence 99987653
No 3
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-93 Score=714.39 Aligned_cols=317 Identities=47% Similarity=0.806 Sum_probs=302.1
Q ss_pred cCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 012639 80 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 159 (459)
Q Consensus 80 ~~~k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~q 159 (459)
+.+|+||||||||||++++||++||+|||+|++|+++|+++|+ +|+++|++.|+++++++|+.|||+|||+.+|++|
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~---~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q 78 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWY---PLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQ 78 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhh---hhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHH
Confidence 3568999999999999999999999999999999999988765 3999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEE
Q 012639 160 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 239 (459)
Q Consensus 160 a~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~ 239 (459)
+++|+++|+ .++++|++|||||+|++++++++|+++|+++||++|||||||++|||++.+++.+++++.+ ..++++
T Consensus 79 ~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~ 154 (320)
T COG0276 79 AAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKIS 154 (320)
T ss_pred HHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceE
Confidence 999999998 4589999999999999999999999999999999999999999999999999999998765 357899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCC-CCCeeE
Q 012639 240 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTL 318 (459)
Q Consensus 240 ~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~-~~~~~l 318 (459)
+|++|++||.||+||+++|++.+++++ .++..|||||||+|++++++ ||||+.||++|+++|+++| |+ .++|.+
T Consensus 155 ~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~l---g~~~~~~~~ 229 (320)
T COG0276 155 TIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEAL---GLPEEEYDL 229 (320)
T ss_pred EecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHHc---CCCchheeE
Confidence 999999999999999999999999987 46689999999999999975 9999999999999999999 86 368999
Q ss_pred EEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHH
Q 012639 319 AYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITD 398 (459)
Q Consensus 319 afQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~a 398 (459)
+|||++|+++||+|+|+|++++|.++|+|+|+|+||||++||+|||+|||+|+++++++.|+.+|.|+|||||||.||++
T Consensus 230 ~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~ 309 (320)
T COG0276 230 TFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDA 309 (320)
T ss_pred EeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 012639 399 LADAVIEALP 408 (459)
Q Consensus 399 LadlV~e~l~ 408 (459)
|+++|.+.+.
T Consensus 310 la~lv~~~~~ 319 (320)
T COG0276 310 LADLVRELLN 319 (320)
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 4
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=1.5e-91 Score=708.16 Aligned_cols=316 Identities=46% Similarity=0.761 Sum_probs=276.9
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHH
Q 012639 83 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 162 (459)
Q Consensus 83 k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~ 162 (459)
|+||||+|||||++++||++||++||+|++||++| ++| +++|+++|+++|++|++++|++|||||||+.+|++|+++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~~--~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~ 77 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WLW--QPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEA 77 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TTT--HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-chh--HHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999 664 468999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEEec
Q 012639 163 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIR 242 (459)
Q Consensus 163 L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~ 242 (459)
|+++|++.+.++.|++|||||+|+|++++++|+++|+++|+++|||||||.+||||+++.+.+++++.. ..+++++|+
T Consensus 78 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~--~~~~~~~i~ 155 (316)
T PF00762_consen 78 LQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSR--PNPKVRFIP 155 (316)
T ss_dssp HHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTH--SSSEEEEE-
T ss_pred HHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcC--CCCeEEEeC
Confidence 999999877789999999999999999999999999999999999999999999999999999998743 356899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEec
Q 012639 243 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQS 322 (459)
Q Consensus 243 ~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQS 322 (459)
+|++||.||+|++++|+++++.++.++.+.|||||||+|+++++++||||..||++|+++|+++| |+. +|+++|||
T Consensus 156 ~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l---~~~-~~~~~fQS 231 (316)
T PF00762_consen 156 SFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERL---GLP-EWRLAFQS 231 (316)
T ss_dssp --TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHT---TTS-SEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHc---CCC-ceEEEEEC
Confidence 99999999999999999999987432357999999999999995569999999999999999999 875 49999999
Q ss_pred CccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHH
Q 012639 323 RVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADA 402 (459)
Q Consensus 323 r~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadl 402 (459)
++|+.+||+|+|+|+|++|+++|+|+|+|+||||++||+|||||||+|+++.|+++|+++|.|+|||||||.|+++|+++
T Consensus 232 ~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~~~fi~~La~~ 311 (316)
T PF00762_consen 232 RFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDSPEFIEALADL 311 (316)
T ss_dssp -SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-HHHHHHHHHH
T ss_pred CCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc
Q 012639 403 VIEAL 407 (459)
Q Consensus 403 V~e~l 407 (459)
|.++|
T Consensus 312 v~~~~ 316 (316)
T PF00762_consen 312 VREHL 316 (316)
T ss_dssp HHHHH
T ss_pred HHhCc
Confidence 99875
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=1.5e-88 Score=688.33 Aligned_cols=320 Identities=48% Similarity=0.846 Sum_probs=299.3
Q ss_pred cCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 012639 80 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 159 (459)
Q Consensus 80 ~~~k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~q 159 (459)
+++|+||||+|||||+|++||++||+|||+|++||++|+++| +++++.+|+++|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~--~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q 79 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKW--RKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQ 79 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCcccc--ccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHH
Confidence 345789999999999999999999999999999999998664 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEE
Q 012639 160 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 239 (459)
Q Consensus 160 a~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~ 239 (459)
+++|++.|++. .+++|++|||||+|+|++++++|+++|+++|+++|||||||.+|+||+++++.+++++.... .+.++
T Consensus 80 ~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~-~~~~~ 157 (322)
T TIGR00109 80 AHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL-RPTIS 157 (322)
T ss_pred HHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC-CCeEE
Confidence 99999999754 57999999999999999999999999999999999999999999999999999998775422 15799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEE
Q 012639 240 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLA 319 (459)
Q Consensus 240 ~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~la 319 (459)
+|++|++||.||+|++++|+++++.++.++++.|||||||+|+++++ +||||++||.+|+++|++++ |...+|.++
T Consensus 158 ~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~-~Gd~Y~~~~~~ta~~l~~~l---~~~~~~~~~ 233 (322)
T TIGR00109 158 VIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYVD-EGDPYPAECEATTRLIAEKL---GFPNEYRLT 233 (322)
T ss_pred EeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhh-CCCChHHHHHHHHHHHHHHc---CCCCCeEEE
Confidence 99999999999999999999999877554567899999999999996 69999999999999999999 643589999
Q ss_pred EecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHH
Q 012639 320 YQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDL 399 (459)
Q Consensus 320 fQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aL 399 (459)
|||++||.+||+|+|+++|++|+++|+|+|+|+|+||++||+|||||||+|+++.|++.|+++|.|+||||+||.|+++|
T Consensus 234 fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l 313 (322)
T TIGR00109 234 WQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAM 313 (322)
T ss_pred EeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHc
Q 012639 400 ADAVIEAL 407 (459)
Q Consensus 400 adlV~e~l 407 (459)
+++|.+++
T Consensus 314 ~~~v~~~~ 321 (322)
T TIGR00109 314 ATLVKKKL 321 (322)
T ss_pred HHHHHHhh
Confidence 99999865
No 6
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=4.8e-84 Score=651.90 Aligned_cols=302 Identities=33% Similarity=0.545 Sum_probs=273.3
Q ss_pred cCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 012639 80 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 159 (459)
Q Consensus 80 ~~~k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~q 159 (459)
+++|+||||||||||++++||++||+|++.|+. | .+..|+. .+++|++|||+|||+.+|++|
T Consensus 1 ~~~~~avlll~~GgP~~~~~V~pfL~ni~~g~~----~-----~~~~l~~---------~~~~Y~~iGG~SPL~~~T~~q 62 (311)
T PRK12435 1 MKKKIGLLVMAYGTPYKEEDIERYYTHIRHGRK----P-----SEEMLQD---------LKDRYEAIGGISPLAKITDEQ 62 (311)
T ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC----C-----CHHHHHH---------HHHHHHHhCCcChHHHHHHHH
Confidence 356799999999999999999999999999872 2 1122322 469999999999999999999
Q ss_pred HHHHHHHHHhc--CCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCc
Q 012639 160 AQALKTALEAK--NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP 237 (459)
Q Consensus 160 a~~L~~~L~~~--~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~ 237 (459)
+++|+++|++. +.+++|++|||||+|++++++++|+++|+++|++||||||||++|+||+.+.+.++.++ .+.++
T Consensus 63 a~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~---~~~~~ 139 (311)
T PRK12435 63 AKALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEK---LGGPT 139 (311)
T ss_pred HHHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhcc---cCCCe
Confidence 99999999864 35799999999999999999999999999999999999999999999988877765543 23468
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhhcCC--CCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCC
Q 012639 238 VSIIRSWYQREGYVNSMADLIQKELGKFQK--PEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINND 315 (459)
Q Consensus 238 ~~~i~~~~~~p~yI~ala~~I~~~l~~~~~--~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~ 315 (459)
+++|++|++||.||+|++++|+++|++++. ++++.|||||||+|+++++ +||||.+||++|+++|+++| |+. +
T Consensus 140 ~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~-~GDpY~~q~~~t~~~v~~~l---~~~-~ 214 (311)
T PRK12435 140 ITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIA-AGDPYPDQLEETADLIAEQA---NVE-H 214 (311)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhh-CCCCHHHHHHHHHHHHHHHc---CCC-C
Confidence 999999999999999999999999988743 2557999999999999996 69999999999999999999 774 7
Q ss_pred eeEEEecCc-cCCCCCCCcHHHHHHHhhhc-CCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCH
Q 012639 316 HTLAYQSRV-GPVKWLKPYTDEVLVELGQK-GVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTP 393 (459)
Q Consensus 316 ~~lafQSr~-G~~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p 393 (459)
|.++||||+ ||.+||+|+|+|+|++|+++ |+|+|+|+||||++||+|||||||+|+++.|+++|++ |.|+||||+||
T Consensus 215 ~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~-~~r~~~lN~~p 293 (311)
T PRK12435 215 YAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAK-YYRPEMPNADP 293 (311)
T ss_pred CeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCc-EEeccCCCCCH
Confidence 999999996 79999999999999999988 9999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 012639 394 SFITDLADAVIEALP 408 (459)
Q Consensus 394 ~fi~aLadlV~e~l~ 408 (459)
.||++|+++|.++++
T Consensus 294 ~fi~~La~lv~~~~~ 308 (311)
T PRK12435 294 LFIDALADVVLKKLK 308 (311)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999764
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=2.9e-82 Score=644.48 Aligned_cols=322 Identities=48% Similarity=0.794 Sum_probs=303.3
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHH
Q 012639 81 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 160 (459)
Q Consensus 81 ~~k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa 160 (459)
.+|+||||+|||||++++||++||+|||+|++|+++|+++|+ ++|+++|+++|++|++++|+.||+||||+.+|++|+
T Consensus 3 ~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~--~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~ 80 (333)
T PRK00035 3 MPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQ--PLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQA 80 (333)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHH--HHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 368999999999999999999999999999999999998865 679999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEE
Q 012639 161 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSI 240 (459)
Q Consensus 161 ~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~ 240 (459)
++|++.|++.+.++.|++|||||+|+++++|++|+++|+++|+++|||||||.+|+|++.+++.+++++... .+++++
T Consensus 81 ~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~--~~~i~~ 158 (333)
T PRK00035 81 EALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL--QPEIRF 158 (333)
T ss_pred HHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC--CCcEEE
Confidence 999999987777899999999999999999999999999999999999999999999999999998887542 468999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhcCCC-CceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCC-CCCeeE
Q 012639 241 IRSWYQREGYVNSMADLIQKELGKFQKP-EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTL 318 (459)
Q Consensus 241 i~~~~~~p~yI~ala~~I~~~l~~~~~~-~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~-~~~~~l 318 (459)
+++|+++|.||++++++|++++++.+.+ +++.|||||||+|+++++ +||||..+|.+|++++++++ |+ ..+|++
T Consensus 159 i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~-~gd~Y~~~~~~t~~~l~~~l---~~~~~~~~~ 234 (333)
T PRK00035 159 IRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYID-KGDPYQQQCEETARLLAEAL---GLPDEDYDL 234 (333)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhh-cCCChHHHHHHHHHHHHHHh---CCCCCCeEE
Confidence 9999999999999999999999776433 457899999999999985 69999999999999999999 76 357999
Q ss_pred EEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHH
Q 012639 319 AYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITD 398 (459)
Q Consensus 319 afQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~a 398 (459)
||||++|+.+|++|+++|+|++|+++|+|+|+|+|+||++||+|||+|||+|+++.+++.|++++.++||||+||.|+++
T Consensus 235 ~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~ 314 (333)
T PRK00035 235 TYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDSPEFIEA 314 (333)
T ss_pred EeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHHHHHHHHHHHcCCceEEECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHcCCc
Q 012639 399 LADAVIEALPSA 410 (459)
Q Consensus 399 LadlV~e~l~~~ 410 (459)
|+++|.+++.+.
T Consensus 315 l~~~v~~~~~~~ 326 (333)
T PRK00035 315 LADLVRENLQGW 326 (333)
T ss_pred HHHHHHHHhcCC
Confidence 999999988765
No 8
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=1.6e-43 Score=325.35 Aligned_cols=159 Identities=46% Similarity=0.761 Sum_probs=149.6
Q ss_pred eEEEEEccCCCCCcCcHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHHH
Q 012639 84 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQAL 163 (459)
Q Consensus 84 ~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L 163 (459)
+||||+|||||++++||++||.+||+|++||++|.++ |++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5999999999999999999999999999999999765 5689999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEEecC
Q 012639 164 KTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS 243 (459)
Q Consensus 164 ~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~ 243 (459)
++.|++.+.++.|++|||||+|+|+|++++|+++|+++|+++|||||||++||||+++.+.+++++... .+++++|++
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~ 155 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRS 155 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCc
Confidence 999987666799999999999999999999999999999999999999999999999999999887533 457999999
Q ss_pred CCCC
Q 012639 244 WYQR 247 (459)
Q Consensus 244 ~~~~ 247 (459)
|++|
T Consensus 156 ~~~~ 159 (159)
T cd03411 156 FYDH 159 (159)
T ss_pred cccC
Confidence 9985
No 9
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=2.8e-38 Score=283.50 Aligned_cols=134 Identities=50% Similarity=0.875 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCC-CCCeeEEEecCccCCCCC
Q 012639 252 NSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTLAYQSRVGPVKWL 330 (459)
Q Consensus 252 ~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~-~~~~~lafQSr~G~~~WL 330 (459)
++++++|+++++... ++++.|||||||+|.++++ +||||..||.+|+++|+++| |. ..+|.++|||++||.+||
T Consensus 1 ~a~~~~I~~~~~~~~-~~~~~llfsaHgiP~~~~~-~gd~Y~~~~~~~~~~v~~~l---~~~~~~~~~~fqS~~g~~~Wl 75 (135)
T cd00419 1 EALADHIREALAELP-REKDRLLFSAHGLPVRDIK-KGDPYPDQCEETARLVAERL---GLPFDEYELAYQSRFGPGEWL 75 (135)
T ss_pred ChHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHhh-CCCCHHHHHHHHHHHHHHHh---CCCCCCEEEEecCCCCCCCCC
Confidence 478999999998774 3457899999999999985 69999999999999999999 63 257999999999999999
Q ss_pred CCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCC
Q 012639 331 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALN 390 (459)
Q Consensus 331 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LN 390 (459)
+|+|+|+|++|.++|+|+|+|+|+||++||+|||+|||+|+++.++++|+.+|.|+||||
T Consensus 76 ~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 76 EPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999988999999998
No 10
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.72 E-value=8.4e-17 Score=159.25 Aligned_cols=194 Identities=20% Similarity=0.288 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCCCC------CHHHHHHHHHH
Q 012639 184 YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQ------REGYVNSMADL 257 (459)
Q Consensus 184 ~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~------~p~yI~ala~~ 257 (459)
-|+..+||++|.++|+++|+|+||+ ...|..++.+.+.+++... .--.+.+.++.-. ++.=++++++.
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplh-----iipG~Ey~~l~~~v~~~~~-~F~~i~~g~PLL~~~g~~~~~~D~~~va~a 130 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLH-----IIPGEEYEKLRATVEAYKH-DFKKIVLGRPLLYTMGQENSPEDYEAVAEA 130 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE-------SCSSHHHHHHHHHHHHHCC-CSSEEEEE--SCSS-----SHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEeecc-----eeCcHhHHHHHHHHHHhhc-cCCeEEecccccccccccCChHHHHHHHHH
Confidence 4889999999999999999999998 6789999999988876542 1225777777766 46666666666
Q ss_pred HHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHH
Q 012639 258 IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEV 337 (459)
Q Consensus 258 I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~ 337 (459)
|.+.+... ..+..+||++||.|... +..|. ..+.++++. |.. ++.+ |.++ -.|+++++
T Consensus 131 L~~~~~~~--~~~~a~vlmGHGt~h~a----n~~Y~-----~l~~~l~~~---~~~-~v~v------gtvE-G~P~~~~v 188 (262)
T PF06180_consen 131 LAEEFPKK--RKDEAVVLMGHGTPHPA----NAAYS-----ALQAMLKKH---GYP-NVFV------GTVE-GYPSLEDV 188 (262)
T ss_dssp HHCCS-TT---TTEEEEEEE---SCHH----HHHHH-----HHHHHHHCC---T-T-TEEE------EETT-SSSBHHHH
T ss_pred HHHhcccc--CCCCEEEEEeCCCCCCc----cHHHH-----HHHHHHHhC---CCC-eEEE------EEeC-CCCCHHHH
Confidence 55433322 24568999999998753 23453 333344332 432 3333 3333 36999999
Q ss_pred HHHhhhcCCceEEEEcccccc-cchhhhHhHHHHH----HHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHc
Q 012639 338 LVELGQKGVKSLLAIPVSFVS-EHIETLEEIDMEY----KELALESGIENWGRVPALNCTPSFITDLADAVIEAL 407 (459)
Q Consensus 338 L~~L~~~G~k~VvVvPigFvs-DhlETL~EidiE~----ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l 407 (459)
|++|.+.|+|+|.++|+++|+ ||. .+||..+. +..+++.|++.-.....|++.|.|++.+.+++++++
T Consensus 189 i~~L~~~g~k~V~L~PlMlVAGdHa--~nDmaGde~dSWks~L~~~G~~v~~~l~GLGE~~~i~~ifi~hl~~ai 261 (262)
T PF06180_consen 189 IARLKKKGIKKVHLIPLMLVAGDHA--KNDMAGDEEDSWKSRLEAAGFEVTCVLKGLGEYPAIQQIFIEHLKEAI 261 (262)
T ss_dssp HHHHHHHT-SEEEEEEESSS--HHH--HCCCCSSSTTSHHHHHHHTT-EEEE----GGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecccccchhh--hhhhcCCCcchHHHHHHHCCCEEEEEeccCcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999 999 88996632 788899999999999999999999999999998875
No 11
>PRK02395 hypothetical protein; Provisional
Probab=99.71 E-value=1.7e-15 Score=151.42 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=168.9
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHH
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 225 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~ 225 (459)
+|=||+......+..+.+.+.|.+++..-.|.+||--.+|+++++++++. .++|+|+|+|..- .....+++.+
T Consensus 7 vgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL~~----G~Hv~~DIP~ 79 (279)
T PRK02395 7 VGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFISE----GYFTEQVIPR 79 (279)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEecc----ccchhhhhHH
Confidence 36678766667777777777776655555788888669999999999985 5899999999732 2333456777
Q ss_pred HHHHh-----ccCC------CCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHH
Q 012639 226 IFRED-----AYLS------RLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRD 294 (459)
Q Consensus 226 ~~~~~-----~~~~------~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~ 294 (459)
.+... ...+ ++.+.+.++++.+|.+++++.++++++....+.+++..||+.+||++... --..
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~~~------~a~~ 153 (279)
T PRK02395 80 ELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTERNE------NSAK 153 (279)
T ss_pred HhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCCch------hHHH
Confidence 66531 0112 56799999999999999999999998775432234568999999996321 0133
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccc-cchhhhHhHHHHHHH
Q 012639 295 QMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVS-EHIETLEEIDMEYKE 373 (459)
Q Consensus 295 q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EidiE~ke 373 (459)
.+.+.++.+.++. ++ ..+.++|-. ..|+++++++++. .++|+|+|+.++. +|. ..||..+...
T Consensus 154 ~~~~~a~~l~~~~---~~-~~V~~~fle-------~~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~--~~DIp~~~~~ 217 (279)
T PRK02395 154 AIYYHADRLRERG---RF-AEVEALFLD-------EEPEVDDWPDLFE---ADDVVVVPLFIADGFHT--QEDIPEDMGL 217 (279)
T ss_pred HHHHHHHHHHhhC---CC-CeEEEEecc-------CCCCHHHHHHHhC---CCeEEEEeeecccCcch--HhHHHHHHHH
Confidence 4445666665543 44 367888865 2699999998875 4799999999999 787 5566655432
Q ss_pred HHH-HcC--------CeeEEEcCCCCCCHHHHHHHHHHHHHHcCC
Q 012639 374 LAL-ESG--------IENWGRVPALNCTPSFITDLADAVIEALPS 409 (459)
Q Consensus 374 ~a~-e~G--------~~~~~rvp~LNd~p~fi~aLadlV~e~l~~ 409 (459)
... +.| ..++.+.+.|+.||.+++.+++++.+.+..
T Consensus 218 ~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~ 262 (279)
T PRK02395 218 TDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGAD 262 (279)
T ss_pred hhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcC
Confidence 211 112 236889999999999999999999998763
No 12
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=99.58 E-value=1e-13 Score=131.28 Aligned_cols=187 Identities=18% Similarity=0.303 Sum_probs=141.4
Q ss_pred HHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhcc------CCCCcEEEecCCCCCHHHHHHHHHHHHHH
Q 012639 188 EEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAY------LSRLPVSIIRSWYQREGYVNSMADLIQKE 261 (459)
Q Consensus 188 ~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~------~~~~~~~~i~~~~~~p~yI~ala~~I~~~ 261 (459)
..||.+|+++|+++++++|++ ...|..++.+-+...+... .+.+.+.+. .|...+++|+.+.
T Consensus 63 ~~aL~klk~~gy~eviiQ~lh-----iIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k---~DYe~~v~aik~~---- 130 (265)
T COG4822 63 IQALNKLKDQGYEEVIIQPLH-----IIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYK---NDYEICVEAIKDQ---- 130 (265)
T ss_pred HHHHHHHHHccchheeeeeee-----ecCchHHHHHHHHHHHHhhhhheeecCCceeech---hhHHHHHHHHHHh----
Confidence 579999999999999999998 6788888887776665431 223333332 2334455555444
Q ss_pred HhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHh
Q 012639 262 LGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVEL 341 (459)
Q Consensus 262 l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L 341 (459)
+... ..+..++|+.||+-+.. ...| .+.+.++..- |+. ++.++- + + -.|.++++|+.|
T Consensus 131 ~ppl--~k~e~~vlmgHGt~h~s----~~~Y-----acLd~~~~~~---~f~-~v~v~~---v---e-~yP~~d~vi~~l 188 (265)
T COG4822 131 IPPL--NKDEILVLMGHGTDHHS----NAAY-----ACLDHVLDEY---GFD-NVFVAA---V---E-GYPLVDTVIEYL 188 (265)
T ss_pred cCCc--CcCeEEEEEecCCCccH----HHHH-----HHHHHHHHhc---CCC-ceEEEE---e---c-CCCcHHHHHHHH
Confidence 4322 23457999999985542 2345 3777777664 663 444432 1 1 369999999999
Q ss_pred hhcCCceEEEEcccccc-cchhhhHhHH----HHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCCc
Q 012639 342 GQKGVKSLLAIPVSFVS-EHIETLEEID----MEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSA 410 (459)
Q Consensus 342 ~~~G~k~VvVvPigFvs-DhlETL~Eid----iE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~~ 410 (459)
.+.|++.|-++|.+||+ ||. ..||+ .+.++.++++|++.-.++..||+.|+|.+.+.++++.++...
T Consensus 189 ~~~~~~~v~L~PlMlvAG~Ha--~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~Hik~aie~~ 260 (265)
T COG4822 189 RKNGIKEVHLIPLMLVAGDHA--KNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFIDHIKDAIERD 260 (265)
T ss_pred HHcCCceEEEeeeEEeechhh--hhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999 999 99999 778999999999999999999999999999999999987643
No 13
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.33 E-value=4.2e-11 Score=110.07 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=111.0
Q ss_pred CceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCce
Q 012639 269 EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKS 348 (459)
Q Consensus 269 ~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~ 348 (459)
++..||+.+||++.. .....+++.++.+.++. ++ ..++++|-.. .+|+++++|+++.++|+++
T Consensus 12 ~~~~lllvgHGSrd~-------~a~~~~~~la~~l~~~~---~~-~~V~~aFle~------~~Psl~eal~~l~~~g~~~ 74 (154)
T PLN02757 12 DKDGVVIVDHGSRRK-------ESNLMLEEFVAMYKQKT---GH-PIVEPAHMEL------AEPSIKDAFGRCVEQGASR 74 (154)
T ss_pred CCcEEEEEeCCCCCH-------HHHHHHHHHHHHHHhhC---CC-CcEEEEEEec------CCCCHHHHHHHHHHCCCCE
Confidence 446899999998532 14677778888887765 44 3568888552 4799999999999999999
Q ss_pred EEEEcccccc-cchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCh
Q 012639 349 LLAIPVSFVS-EHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNP 427 (459)
Q Consensus 349 VvVvPigFvs-DhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~~~~~~~~~~~~c~~c~~~ 427 (459)
|+|+|+.|+. -|+ ..||..+.++...+.+...+.+.++|+.||.++++|++++.+++..... ..++|++|+-+
T Consensus 75 vvVvP~FL~~G~H~--~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~~~----~~~~~~~~~~~ 148 (154)
T PLN02757 75 VIVSPFFLSPGRHW--QEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHVAG----DADECDVCAGT 148 (154)
T ss_pred EEEEEhhhcCCcch--HhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcccC----CCCccceeecc
Confidence 9999998888 777 6778878888877776667999999999999999999999999876432 24789999876
Q ss_pred -hHH
Q 012639 428 -VRY 430 (459)
Q Consensus 428 -~~~ 430 (459)
.|+
T Consensus 149 ~~~~ 152 (154)
T PLN02757 149 GKCR 152 (154)
T ss_pred cccc
Confidence 554
No 14
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.33 E-value=1.1e-11 Score=104.42 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=77.3
Q ss_pred EEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEE
Q 012639 272 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 351 (459)
Q Consensus 272 ~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 351 (459)
+|||++||+|.. ++|...+.+.++.+.+++ +. .++.++|++ |++|++++++++|.++|+++|+|
T Consensus 1 ~lllv~HGs~~~------s~~~~~~~~~~~~l~~~~---~~-~~v~~a~~~------~~~P~i~~~l~~l~~~g~~~vvv 64 (101)
T cd03409 1 GLLVVGHGSPYK------DPYKKDIEAQAHNLAESL---PD-FPYYVGFQS------GLGPDTEEAIRELAEEGYQRVVI 64 (101)
T ss_pred CEEEEECCCCCC------ccHHHHHHHHHHHHHHHC---CC-CCEEEEEEC------CCCCCHHHHHHHHHHcCCCeEEE
Confidence 389999999842 579989999999998876 32 478999999 36899999999999999999999
Q ss_pred EcccccccchhhhHhHHHHHHHHHH
Q 012639 352 IPVSFVSEHIETLEEIDMEYKELAL 376 (459)
Q Consensus 352 vPigFvsDhlETL~EidiE~ke~a~ 376 (459)
+|+.|+ ++.||.+||..+..+..+
T Consensus 65 vPl~~~-~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 65 VPLAPV-SGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred EeCccc-cChhhHHHHHHHHHHHHH
Confidence 999999 999999999999988776
No 15
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.23 E-value=9e-11 Score=98.79 Aligned_cols=75 Identities=27% Similarity=0.353 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCceEEeeeecc-CCCHHHHHHHHHHCCCCEEEEEecCCccccCChh-hHHHHHHHHH
Q 012639 150 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTG-SSIRVLQNIF 227 (459)
Q Consensus 150 SPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~-~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttg-s~~~~l~~~~ 227 (459)
||.+.++++++++|+++++ +..|++||+++ .|++++++++|+++|+++|+++|+||+ +..++. +..+++.+..
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVR 87 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHH
Confidence 5778888889998887763 46799999999 999999999999999999999999999 555544 6767776665
Q ss_pred HH
Q 012639 228 RE 229 (459)
Q Consensus 228 ~~ 229 (459)
++
T Consensus 88 ~~ 89 (101)
T cd03409 88 KQ 89 (101)
T ss_pred Hh
Confidence 54
No 16
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.6e-09 Score=106.68 Aligned_cols=228 Identities=17% Similarity=0.169 Sum_probs=151.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEeee-eccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHH
Q 012639 147 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 225 (459)
Q Consensus 147 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~ 225 (459)
|-||++..+. +..+++.+.+.+++....|..|| .+.+|+++++++.+..+|+++|+++|+|.....+++ +++.+
T Consensus 9 gHGsr~p~~~-~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~----~DIP~ 83 (245)
T COG2138 9 GHGSRLPRGR-EVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTK----RDIPA 83 (245)
T ss_pred ecCCCCccHH-HHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhh----cccHH
Confidence 6678888775 44555555777766556677777 899999999999999999999999999986655555 45555
Q ss_pred HHHHhc-cCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHH
Q 012639 226 IFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIM 304 (459)
Q Consensus 226 ~~~~~~-~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~ 304 (459)
.+.... .++. +... +++.||...+.+.+++.+....... +-..+++..||.-.... +.+.| ..++.+.
T Consensus 84 ~L~~~~~~~~~--~~~~-p~G~~~~~~~~~~~r~~~~~~~~~~-~~~~vv~~~~Gs~~~~~--~~~~~-----~va~~l~ 152 (245)
T COG2138 84 ELGLARQAHPQ--VDLS-PLGTHPAVLDLLGQRLEDAGADEAD-DAERVVLEPRGSSDPIA--NAAVY-----RVARLLG 152 (245)
T ss_pred HHHHhhhcCCc--cccc-ccCCchHHHHHHHHHHHHhcccccc-ccceEEEeccCCCcccc--hhHHH-----HHHHHHH
Confidence 444322 2232 2222 8999999999999998887654321 11238888888733221 12222 2333333
Q ss_pred HHHhhcCCCCCee---EEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe
Q 012639 305 QRLKDRGINNDHT---LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 381 (459)
Q Consensus 305 e~L~~~g~~~~~~---lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~ 381 (459)
+. - ..|. .+|+. . .+|.+.+...++. .++++|+|+..+++ +.|.+.+..+. +....+..
T Consensus 153 ~~-----~-~~~~~~~~~~~~-~-----~~~~l~~~~~~~~---~~~~vv~P~fL~~G-~l~~~~~~~~~--~~~~~~~~ 214 (245)
T COG2138 153 EG-----T-ASWKAVITLFTG-V-----AEPGLAGETARLR---YRRVVVLPYFLFDG-LLTDRIRPEVE--LRLAVPEG 214 (245)
T ss_pred hc-----c-CCceeeeeeecc-c-----cCcchhhhhhhcc---cCcEEEEEhhHhCc-hhhhhhHHhhh--hhhccCCc
Confidence 32 2 2333 33322 1 3688888888877 68999999755553 33344333333 33344455
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHHcC
Q 012639 382 NWGRVPALNCTPSFITDLADAVIEALP 408 (459)
Q Consensus 382 ~~~rvp~LNd~p~fi~aLadlV~e~l~ 408 (459)
.+.+.+.+|.+|...+++.+++.+...
T Consensus 215 ~i~~~~~lG~~p~l~~~~~~r~~~~~~ 241 (245)
T COG2138 215 EIALARPLGTHPRLADAVLDRVREARA 241 (245)
T ss_pred ceEecCcCCCCHHHHHHHHHHHHHHHh
Confidence 688999999999999999999988654
No 17
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.94 E-value=2.6e-08 Score=86.55 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=84.4
Q ss_pred EEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEE
Q 012639 272 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 351 (459)
Q Consensus 272 ~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 351 (459)
.+|+.+||++.. .....+.+.++.+.+++ +. .++..+|-+. ..|+++++|+++.++|+++|+|
T Consensus 2 a~llv~HGS~~~-------~~~~~~~~l~~~l~~~~---~~-~~v~~afle~------~~P~~~~~l~~l~~~g~~~i~v 64 (117)
T cd03414 2 AVVLVGRGSSDP-------DANADVAKIARLLEEGT---GF-ARVETAFAAA------TRPSLPEALERLRALGARRVVV 64 (117)
T ss_pred EEEEEcCCCCCH-------HHHHHHHHHHHHHHHhc---CC-CeEEEEEecC------CCCCHHHHHHHHHHcCCCEEEE
Confidence 588999998532 13445566666666554 32 3678888662 2699999999999999999999
Q ss_pred Ecccccc-cchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHH
Q 012639 352 IPVSFVS-EHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEA 406 (459)
Q Consensus 352 vPigFvs-DhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~ 406 (459)
+|+.++. .|. .+|..+..+...+ +...+...+.|+.||.+++++++++.+.
T Consensus 65 vP~fL~~G~h~---~~i~~~~~~~~~~-~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 65 LPYLLFTGVLM---DRIEEQVAELAAE-PGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred EechhcCCchH---HHHHHHHHHHHhC-CCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 9998888 444 4565555554434 4457899999999999999999999875
No 18
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.91 E-value=1.8e-08 Score=89.02 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=83.0
Q ss_pred eEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEE
Q 012639 271 VMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLL 350 (459)
Q Consensus 271 ~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~Vv 350 (459)
..+|+.+||++... ....+.+.++.+.++. +. ..+.++|-+. ..|+++++|++|.++|+++|+
T Consensus 2 ~~lvlv~hGS~~~~-------~~~~~~~~~~~l~~~~---~~-~~v~~afle~------~~P~l~~~l~~l~~~g~~~v~ 64 (126)
T PRK00923 2 LGLLLVGHGSRLPY-------NKEVVTKIAEKIKEKH---PF-YIVEVGFMEF------NEPTIPEALKKLIGTGADKII 64 (126)
T ss_pred cEEEEEeCCCCChH-------HHHHHHHHHHHHHHhC---CC-CeEEEEEEEc------CCCCHHHHHHHHHHcCCCEEE
Confidence 36899999995321 2344455555555543 22 3578888551 259999999999999999999
Q ss_pred EEcccccc-cchhhhHhHHHHHH-------HHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHH
Q 012639 351 AIPVSFVS-EHIETLEEIDMEYK-------ELALESGIENWGRVPALNCTPSFITDLADAVIEA 406 (459)
Q Consensus 351 VvPigFvs-DhlETL~EidiE~k-------e~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~ 406 (459)
|+|+.++. .|. -.||..+.. ++..+.....+.+.++|++||.+++.+.+++.++
T Consensus 65 vvPlfl~~G~h~--~~dip~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 65 VVPVFLAHGVHT--KRDIPRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred EEchhhccCccc--ccccchhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 99998887 677 445544332 2322333346889999999999999999998763
No 19
>PLN02757 sirohydrochlorine ferrochelatase
Probab=98.88 E-value=6.2e-08 Score=89.17 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=83.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEeee-eccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHH
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 224 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~ 224 (459)
+|-||+-.... +..+.+.+.|.+......|..|| .+++|+++++++++.+.|+++|+++|+|..-+.. +.+++.
T Consensus 19 vgHGSrd~~a~-~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H----~~~DIp 93 (154)
T PLN02757 19 VDHGSRRKESN-LMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRH----WQEDIP 93 (154)
T ss_pred EeCCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcc----hHhHHH
Confidence 35667766533 34445555554433223455665 8899999999999999999999999999743333 334566
Q ss_pred HHHHHhc-cCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 012639 225 NIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 265 (459)
Q Consensus 225 ~~~~~~~-~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~ 265 (459)
+.+++.. .+|.+.+.+.++.+.||.+++++.+++++++...
T Consensus 94 ~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 94 ALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 6554422 3567889999999999999999999999998653
No 20
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.84 E-value=6.1e-08 Score=84.16 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=83.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeec-cCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHH
Q 012639 147 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 225 (459)
Q Consensus 147 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY-~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~ 225 (459)
|-||+..... +..+.+.+.|.+..+...|+.||-. +.|++++++++|.++|+++|+++|+|.. .|...+++.+
T Consensus 7 ~HGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~-----~G~h~~~i~~ 80 (117)
T cd03414 7 GRGSSDPDAN-ADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLF-----TGVLMDRIEE 80 (117)
T ss_pred cCCCCCHHHH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhc-----CCchHHHHHH
Confidence 5567654443 4667777777666555789999855 6999999999999999999999999853 3444455666
Q ss_pred HHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHHH
Q 012639 226 IFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKE 261 (459)
Q Consensus 226 ~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~ 261 (459)
.+++....+...+.+.++.+.+|.+++++.++++++
T Consensus 81 ~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 81 QVAELAAEPGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 555432225678999999999999999999999875
No 21
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.83 E-value=3e-08 Score=87.58 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=82.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEee-eeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHH
Q 012639 147 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 225 (459)
Q Consensus 147 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~a-mrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~ 225 (459)
|-||+... +.+..+++.+.+.+.++...|++| |.|+.|++++++++|.++|+++|+++|+|..-...+ .+++..
T Consensus 8 ~hGS~~~~-~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~----~~dip~ 82 (126)
T PRK00923 8 GHGSRLPY-NKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGVHT----KRDIPR 82 (126)
T ss_pred eCCCCChH-HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCccc----ccccch
Confidence 55676543 346667777778776666778888 589999999999999999999999999996533333 234444
Q ss_pred HHH-------H-hccCCCCcEEEecCCCCCHHHHHHHHHHHHHH
Q 012639 226 IFR-------E-DAYLSRLPVSIIRSWYQREGYVNSMADLIQKE 261 (459)
Q Consensus 226 ~~~-------~-~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~ 261 (459)
.+. + ....+++.+.+.++.+.||.+++++.++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 83 ILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred hhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 332 1 11235677889999999999999999998763
No 22
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.78 E-value=1.1e-07 Score=84.52 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=84.4
Q ss_pred eEEEEeeCCCchhhccccCCcc-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceE
Q 012639 271 VMIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSL 349 (459)
Q Consensus 271 ~~LLFSaHGlP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~V 349 (459)
+.||+.+||+. ||. ...+++.++.+.++. +. ++..||-. -.+|+++|+++++.++|+++|
T Consensus 1 ~~lllvgHGSR--------~~~~~~~~~~la~~l~~~~---~~--~v~~afle------~~~P~l~~~l~~l~~~G~~~i 61 (125)
T cd03415 1 TAIIIITHGSR--------RNTFNEDMEEWAAYLERKL---GV--PVYLTYNE------YAEPNWRDLLNELLSEGYGHI 61 (125)
T ss_pred CEEEEEecCCC--------ChHHHHHHHHHHHHHHhcc---CC--ceEEEEee------cCCCCHHHHHHHHHHCCCCEE
Confidence 36899999984 343 556666666665443 32 57788854 247999999999999999999
Q ss_pred EEEcccccc-cchhhhHhHHHHHHHH-----H-HHc--CCeeEEEcCCCCCCHHHHHHHHHHHHH
Q 012639 350 LAIPVSFVS-EHIETLEEIDMEYKEL-----A-LES--GIENWGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 350 vVvPigFvs-DhlETL~EidiE~ke~-----a-~e~--G~~~~~rvp~LNd~p~fi~aLadlV~e 405 (459)
+|+|+.+.. -|+ -.||-.+..+. . .+. .-..+...+.||+||.+.+++++++.+
T Consensus 62 vVvPlFL~~G~Hv--~~DiP~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 62 IIALAFLGRGNHV--ARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred EEehhhccCCcch--HHHHHHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999976666 787 77776666542 1 122 113599999999999999999999876
No 23
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.77 E-value=1.2e-07 Score=84.38 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=81.7
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEeee-eccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHH
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 224 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~ 224 (459)
+|-||+...+.+ ..+.+.+.+.+. .++.|+.|| .+++|++++++++|.++|+++|+|+|+|.. ..++..+++.
T Consensus 6 vgHGSR~~~~~~-~~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~----~G~Hv~~DiP 79 (125)
T cd03415 6 ITHGSRRNTFNE-DMEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLG----RGNHVARDIM 79 (125)
T ss_pred EecCCCChHHHH-HHHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhcc----CCcchHHHHH
Confidence 366787776654 344455555432 356688886 899999999999999999999999999974 3345566777
Q ss_pred HHHHHh--------c-cCCCCcEEEecCCCCCHHHHHHHHHHHHH
Q 012639 225 NIFRED--------A-YLSRLPVSIIRSWYQREGYVNSMADLIQK 260 (459)
Q Consensus 225 ~~~~~~--------~-~~~~~~~~~i~~~~~~p~yI~ala~~I~~ 260 (459)
+.+++. . ..+++.+.+.++.+.||.+++++++++++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 80 GELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 766541 1 12456799999999999999999999876
No 24
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.55 E-value=1.4e-06 Score=77.64 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=83.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEeeee------------ccCCCHHHHHHHHHHCCCCEEEEEecCCccccCCh
Q 012639 149 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTT 216 (459)
Q Consensus 149 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr------------Y~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Tt 216 (459)
||--. ..++--+++.+.+.+..+++.|++||. -..|++.++|++|.++|+++|+|+|++. ..
T Consensus 9 GS~~~-~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l-----~~ 82 (127)
T cd03412 9 GTSYP-TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHI-----IP 82 (127)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCee-----EC
Confidence 44444 333445666777766678899999985 4589999999999999999999999994 56
Q ss_pred hhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHH
Q 012639 217 GSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 260 (459)
Q Consensus 217 gs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~ 260 (459)
|..++++.+.+++.. .+...+.+.++...++.-++.+++.|.+
T Consensus 83 G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 83 GEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred cHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 777899998888765 4567899999999999988888877654
No 25
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.45 E-value=5.6e-06 Score=85.06 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=89.8
Q ss_pred eEEEEeeCCCchhhccccCCcc-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceE
Q 012639 271 VMIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSL 349 (459)
Q Consensus 271 ~~LLFSaHGlP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~V 349 (459)
..+|+.+||+. ||. ...+++.++.+.++. +. ++.++|-. -.+|++++.+++|.++|+++|
T Consensus 7 ~aiLLvgHGSR--------dp~~~~~~~~La~~l~~~~---~~--~V~~aFLE------~~ePsl~eal~~l~~~G~~~I 67 (335)
T PRK05782 7 TAIILIGHGSR--------RETFNSDMEGMANYLKEKL---GV--PIYLTYNE------FAEPNWRSLLNEIIKEGYRRV 67 (335)
T ss_pred ceEEEEecCCC--------ChHHHHHHHHHHHHHHhcc---CC--ceEEEEec------cCCCCHHHHHHHHHHCCCCEE
Confidence 57999999983 343 566666666666543 33 57788744 347999999999999999999
Q ss_pred EEEcccccc-cchhhhHhHHHHHHHH-H-----HHc-CC-eeEEEcCCCCCCHHHHHHHHHHHHHHcCCc
Q 012639 350 LAIPVSFVS-EHIETLEEIDMEYKEL-A-----LES-GI-ENWGRVPALNCTPSFITDLADAVIEALPSA 410 (459)
Q Consensus 350 vVvPigFvs-DhlETL~EidiE~ke~-a-----~e~-G~-~~~~rvp~LNd~p~fi~aLadlV~e~l~~~ 410 (459)
+|+|+.++. -|+ -.||-.+..+. + .++ |. .++.+.+.||.||.+.++|++++.+.+..+
T Consensus 68 vVvPlFL~~G~Hv--~~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 68 IIALAFLGRGNHV--FRDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred EEecccccCCcch--hhhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 999987666 688 77777666531 1 221 31 257999999999999999999999988655
No 26
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.45 E-value=2.1e-06 Score=88.12 Aligned_cols=113 Identities=12% Similarity=0.187 Sum_probs=84.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEeee-eccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHH
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 224 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~ 224 (459)
+|=||....+.+. .+.|.+.|.+. .+..|++|| .+++|++++++++|.++|+++|+|+|+|.. ..++..+++.
T Consensus 12 vgHGSRdp~~~~~-~~~La~~l~~~-~~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~----~G~Hv~~DIP 85 (335)
T PRK05782 12 IGHGSRRETFNSD-MEGMANYLKEK-LGVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLG----RGNHVFRDIM 85 (335)
T ss_pred EecCCCChHHHHH-HHHHHHHHHhc-cCCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEeccccc----CCcchhhhHH
Confidence 4667877766543 44455555443 245688886 899999999999999999999999999974 3345566677
Q ss_pred HHHHHh-------ccC--CCCcEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 012639 225 NIFRED-------AYL--SRLPVSIIRSWYQREGYVNSMADLIQKELGK 264 (459)
Q Consensus 225 ~~~~~~-------~~~--~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~ 264 (459)
+.+... ..+ +++.+++.++.+.||.+++++.+++++++..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~ 134 (335)
T PRK05782 86 GELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDA 134 (335)
T ss_pred HHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhc
Confidence 665531 112 3466799999999999999999999998854
No 27
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.45 E-value=5.1e-06 Score=73.95 Aligned_cols=119 Identities=15% Similarity=0.228 Sum_probs=85.6
Q ss_pred EEEEeeCCCchhhccccCCcc-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCc-----cCCCCCCCcHHHHHHHhhhcC
Q 012639 272 MIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRV-----GPVKWLKPYTDEVLVELGQKG 345 (459)
Q Consensus 272 ~LLFSaHGlP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~-----G~~~WL~P~t~d~L~~L~~~G 345 (459)
+||+++||+- ||. ...+.+..+.+.++. + ..++..||-|+. -....-.|++.++|++|.++|
T Consensus 2 aillv~fGS~--------~~~~~~~~~~i~~~l~~~~---p-~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G 69 (127)
T cd03412 2 AILLVSFGTS--------YPTAEKTIDAIEDKVRAAF---P-DYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG 69 (127)
T ss_pred eEEEEeCCCC--------CHHHHHHHHHHHHHHHHHC---C-CCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 6899999972 333 223344444444442 1 236889998854 011145799999999999999
Q ss_pred CceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHH
Q 012639 346 VKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEA 406 (459)
Q Consensus 346 ~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~ 406 (459)
+++|+|+|+.++..+ | ..||..+..+.. .+...+...+.|..++.-++.+++.+.+.
T Consensus 70 ~~~V~V~Pl~l~~G~-e-~~di~~~v~~~~--~~~~~i~~g~pLl~~~~d~~~v~~al~~~ 126 (127)
T cd03412 70 YTEVIVQSLHIIPGE-E-YEKLKREVDAFK--KGFKKIKLGRPLLYSPEDYEEVAAALKDQ 126 (127)
T ss_pred CCEEEEEeCeeECcH-H-HHHHHHHHHHHh--CCCceEEEccCCCCCHHHHHHHHHHHHhh
Confidence 999999999999974 3 577766666543 56668999999999999988888877654
No 28
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.40 E-value=4.1e-07 Score=77.38 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCceEEeee-eccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhc-cCCCCc
Q 012639 160 AQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDA-YLSRLP 237 (459)
Q Consensus 160 a~~L~~~L~~~~~~~~V~~am-rY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~-~~~~~~ 237 (459)
.+.+.+.|.+... ..|.+|| .++.|++++++++|.+.|+++|+|+|+|..-+ ....+++.+.+++.. ..+++.
T Consensus 12 ~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G----~h~~~DIp~~l~~~~~~~~~~~ 86 (105)
T PF01903_consen 12 LEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPG----YHVKRDIPEALAEARERHPGIE 86 (105)
T ss_dssp HHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSS----HHHHCHHHHHHCHHHHCSTTEE
T ss_pred HHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCc----cchHhHHHHHHHHHHhhCCceE
Confidence 3444555555444 7899998 79999999999999999999999999996322 223334776665432 345678
Q ss_pred EEEecCCCCCHHHHHHHHH
Q 012639 238 VSIIRSWYQREGYVNSMAD 256 (459)
Q Consensus 238 ~~~i~~~~~~p~yI~ala~ 256 (459)
+.+.++.+.||.+++++++
T Consensus 87 v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 87 VRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp EEE---GGGSCCHHHHHH-
T ss_pred EEECCCCCCCHHHHHHHhC
Confidence 9999999999999998864
No 29
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.38 E-value=2.3e-06 Score=73.66 Aligned_cols=96 Identities=20% Similarity=0.343 Sum_probs=68.6
Q ss_pred EEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEE
Q 012639 272 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 351 (459)
Q Consensus 272 ~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 351 (459)
.+||.+||.+... .+.| ++..+.+.++ +. .++.++|- + -.|+++++++++.++|+++|++
T Consensus 2 ~illvgHGSr~~~----~~~~----~~l~~~l~~~----~~-~~v~~~~l------E-~~P~i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 2 AVVFMGHGTDHPS----NAVY----AALEYVLREE----DP-ANVFVGTV------E-GYPGLDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred eEEEEECCCCchh----hhHH----HHHHHHHHhc----CC-CcEEEEEE------c-CCCCHHHHHHHHHHcCCCEEEE
Confidence 4889999997541 1233 2333333322 22 35677774 3 3799999999999999999999
Q ss_pred Ecccccc-cchhhhHhHHHH----HHHHHHHcCCeeEEEcCCC
Q 012639 352 IPVSFVS-EHIETLEEIDME----YKELALESGIENWGRVPAL 389 (459)
Q Consensus 352 vPigFvs-DhlETL~EidiE----~ke~a~e~G~~~~~rvp~L 389 (459)
+|+.+++ +|+ -+||..| -+..+++.|++.-.+...|
T Consensus 62 vPl~L~~G~H~--~~Dipge~~~SW~~~l~~~g~~v~~~~~gl 102 (103)
T cd03413 62 MPLMLVAGDHA--HNDMAGDEPDSWKSILEAAGIKVETVLKGL 102 (103)
T ss_pred Eehhheecccc--hhcCCCCCchhHHHHHHHCCCeeEEEeccC
Confidence 9999998 999 7888665 3777888898765555544
No 30
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.34 E-value=6.7e-06 Score=69.56 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=72.2
Q ss_pred EEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEE
Q 012639 273 IFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 352 (459)
Q Consensus 273 LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 352 (459)
+|+.+||.+.. .....+.+.++.+.++. +. ..+..+|-.. ..|+++++++++.++|+++|+|+
T Consensus 2 ivlv~hGS~~~-------~~~~~~~~l~~~l~~~~---~~-~~v~~afle~------~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRDP-------RAAEALEALAERLRERL---PG-DEVELAFLEL------AEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCCH-------HHHHHHHHHHHHHHhhC---CC-CcEEEEEEEc------CCCCHHHHHHHHHHcCCCEEEEE
Confidence 78999998532 23345555666665554 22 4678888541 36999999999999999999999
Q ss_pred cccccc-cchhhhHhHHHHHHHHHHHcCCeeEEEcCCCC
Q 012639 353 PVSFVS-EHIETLEEIDMEYKELALESGIENWGRVPALN 390 (459)
Q Consensus 353 PigFvs-DhlETL~EidiE~ke~a~e~G~~~~~rvp~LN 390 (459)
|+.++. .|. -.||..+.+++..+....++.+.+.|+
T Consensus 65 Plfl~~G~h~--~~dip~~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 65 PLFLLAGGHV--KEDIPAALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred eeEeCCCccc--cccHHHHHHHHHHHCCCeEEEecCCCC
Confidence 988877 677 567777777766555555788888875
No 31
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.33 E-value=1.1e-06 Score=74.77 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccc-cchhhhHhHHHHH
Q 012639 293 RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVS-EHIETLEEIDMEY 371 (459)
Q Consensus 293 ~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvs-DhlETL~EidiE~ 371 (459)
...++..++.+.+++ + .++..+|-.. .+|++.++++++.++|.++|+|+|+.++. -|. -.||....
T Consensus 9 ~~~~~~la~~l~~~~---~--~~v~~~fle~------~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~--~~DIp~~l 75 (105)
T PF01903_consen 9 NAELEDLADRLRERL---P--VPVEVAFLEF------AEPSLEEALERLVAQGARRIVVVPYFLFPGYHV--KRDIPEAL 75 (105)
T ss_dssp HHHHHHHHHHHHHHT---S--SEEEEEESSC------CCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHH--HCHHHHHH
T ss_pred HHHHHHHHHHHHhhc---C--CeEEEEEEec------CCCCHHHHHHHHHHcCCCeEEEEeeeecCccch--HhHHHHHH
Confidence 677777777787776 4 4788888442 36999999999999999999999987766 444 55677777
Q ss_pred HHHHHHcCCeeEEEcCCCCCCHHHHHHHHH
Q 012639 372 KELALESGIENWGRVPALNCTPSFITDLAD 401 (459)
Q Consensus 372 ke~a~e~G~~~~~rvp~LNd~p~fi~aLad 401 (459)
.+...+.+..++.+.++|+.||.++++|+|
T Consensus 76 ~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 76 AEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp CHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 777767776689999999999999988875
No 32
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.06 E-value=5.1e-05 Score=64.17 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEeee-eccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHH
Q 012639 147 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 225 (459)
Q Consensus 147 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am-rY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~ 225 (459)
+-||+..... +..+.+.+.|.+..+...|+.|| ....|++++++++|.++|+++|+++|++......+. +++.+
T Consensus 6 ~hGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~----~dip~ 80 (101)
T cd03416 6 GHGSRDPRAA-EALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVK----EDIPA 80 (101)
T ss_pred EcCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCcccc----ccHHH
Confidence 3355554333 45566666676655566788886 677999999999999999999999999965444433 34555
Q ss_pred HHHHhc-cCCCCcEEEecCC
Q 012639 226 IFREDA-YLSRLPVSIIRSW 244 (459)
Q Consensus 226 ~~~~~~-~~~~~~~~~i~~~ 244 (459)
.+++.. .++++++++.++.
T Consensus 81 ~~~~~~~~~~~~~i~~~~pl 100 (101)
T cd03416 81 ALAAARARHPGVRIRYAPPL 100 (101)
T ss_pred HHHHHHHHCCCeEEEecCCC
Confidence 444321 2455667765553
No 33
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.67 E-value=0.00055 Score=70.23 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=74.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCceEEeee--ecc-----CCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHH
Q 012639 148 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 220 (459)
Q Consensus 148 ggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am--rY~-----~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~ 220 (459)
.|+|-.....+.+++|.+.|... .+ +..+| +.+ .|+++++|++|.++|+++|+++|.- |.+-...+.+
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~~-~~--~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~g--Fv~D~lETl~ 279 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGFP-NE--YRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIG--FTADHLETLY 279 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCCC-CC--eEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCc--ccccchhHHH
Confidence 57888888888888888888511 23 44444 444 9999999999999999999999972 2222222221
Q ss_pred HHHHHHHHHhccCCCCc-EEEecCCCCCHHHHHHHHHHHHHHH
Q 012639 221 RVLQNIFREDAYLSRLP-VSIIRSWYQREGYVNSMADLIQKEL 262 (459)
Q Consensus 221 ~~l~~~~~~~~~~~~~~-~~~i~~~~~~p~yI~ala~~I~~~l 262 (459)
++.-.+++.....+.. +..++...++|.||+++++.|++.+
T Consensus 280 -ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 280 -EIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred -hhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 2221111111112334 9999999999999999999998864
No 34
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.66 E-value=0.00069 Score=69.46 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=74.0
Q ss_pred eeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEccc
Q 012639 276 SAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS 355 (459)
Q Consensus 276 SaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig 355 (459)
.+||.|... ..++.++.+.+.|...+....+..++ +. ..|+++|+|++|.++|+++|+|+|..
T Consensus 66 ig~gSPl~~----------~t~~q~~~L~~~l~~~~~~~~V~~am--~y-----~~P~i~eal~~l~~~G~~~IivlPL~ 128 (333)
T PRK00035 66 IGGGSPLNV----------ITRRQAEALQAELAARGPDLPVYLGM--RY-----WNPSIEEALEALKADGVDRIVVLPLY 128 (333)
T ss_pred cCCCChhHH----------HHHHHHHHHHHHHhccCCCceEEEee--cC-----CCCCHHHHHHHHHhcCCCEEEEEECC
Confidence 466777542 22345566666663322222334443 22 37999999999999999999999997
Q ss_pred c-----cccchhhhHhHHHHHHHHHHHcC-CeeEEEcCCCCCCHHHHHHHHHHHHHHcC
Q 012639 356 F-----VSEHIETLEEIDMEYKELALESG-IENWGRVPALNCTPSFITDLADAVIEALP 408 (459)
Q Consensus 356 F-----vsDhlETL~EidiE~ke~a~e~G-~~~~~rvp~LNd~p~fi~aLadlV~e~l~ 408 (459)
. ++.+. ..++ .+..++.. ...+..++.+.++|.+++++++.|.++++
T Consensus 129 p~~s~~t~gs~--~~~i----~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~ 181 (333)
T PRK00035 129 PQYSYSTTASY--FEDL----ARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALA 181 (333)
T ss_pred CccccccHHHH--HHHH----HHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 4 22333 3333 33333333 24699999999999999999999999874
No 35
>PRK12435 ferrochelatase; Provisional
Probab=97.56 E-value=0.00089 Score=68.45 Aligned_cols=141 Identities=16% Similarity=0.238 Sum_probs=86.6
Q ss_pred ccHHHHHHHHHHHHHHHhhc--CCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEccc--ccccchhhhHh
Q 012639 291 PYRDQMEECIYLIMQRLKDR--GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS--FVSEHIETLEE 366 (459)
Q Consensus 291 pY~~q~~~t~~~v~e~L~~~--g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig--FvsDhlETL~E 366 (459)
|=...-++-++++.++|... +..-++.+++.- | .|+++|+|++|.++|+++|+++|.. |.+=...+..|
T Consensus 54 PL~~~T~~qa~~L~~~L~~~~~~~~~~V~~amry------~-~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~ 126 (311)
T PRK12435 54 PLAKITDEQAKALEKALNEVQDEVEFKLYLGLKH------I-EPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNK 126 (311)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCCceEEEEecC------C-CCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHH
Confidence 33334445666777777432 111122333322 3 7999999999999999999999942 33322234433
Q ss_pred HHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCCccc------------cCCCCCCCCCCCCCh-hHHHHH
Q 012639 367 IDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALA------------MSAPKNISQEDDHNP-VRYAIK 433 (459)
Q Consensus 367 idiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~~~~------------~~~~~~~~c~~c~~~-~~~~~k 433 (459)
..++...+.+...+..+++..+||.||+++++.|+++++.... .+......-.++-|+ .|.++-
T Consensus 127 ---~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~ 203 (311)
T PRK12435 127 ---RAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAGDPYPDQLEETA 203 (311)
T ss_pred ---HHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhhCCCCHHHHHHHHH
Confidence 2233333444457999999999999999999999988854311 122222222345566 777777
Q ss_pred HHHHHHHH
Q 012639 434 MFFGSILA 441 (459)
Q Consensus 434 ~~~~~~~~ 441 (459)
...++.|.
T Consensus 204 ~~v~~~l~ 211 (311)
T PRK12435 204 DLIAEQAN 211 (311)
T ss_pred HHHHHHcC
Confidence 77766553
No 36
>PLN02449 ferrochelatase
Probab=97.47 E-value=0.0018 Score=69.75 Aligned_cols=114 Identities=17% Similarity=0.298 Sum_probs=78.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCceEEeee--ecc-----CCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHH
Q 012639 148 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 220 (459)
Q Consensus 148 ggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~am--rY~-----~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~ 220 (459)
.|.|-...+++-++++.+.|...+...++.++| |.+ .|+++++|++|.++|+++|+++|.- |.+-...+ +
T Consensus 294 ~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPig--FvSDhiET-L 370 (485)
T PLN02449 294 AGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPIS--FVSEHIET-L 370 (485)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCc--ccccchHH-H
Confidence 367888888888999999886543112334444 445 8999999999999999999999974 22222222 2
Q ss_pred HHHHHHHHHhccCCCC-cEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 012639 221 RVLQNIFREDAYLSRL-PVSIIRSWYQREGYVNSMADLIQKELGK 264 (459)
Q Consensus 221 ~~l~~~~~~~~~~~~~-~~~~i~~~~~~p~yI~ala~~I~~~l~~ 264 (459)
.++.-.+++.....++ .+..++...++|.||+++++.|++.+..
T Consensus 371 ~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 371 EEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 2232222221111233 5899999999999999999999998854
No 37
>PRK02395 hypothetical protein; Provisional
Probab=97.47 E-value=0.0014 Score=65.75 Aligned_cols=111 Identities=9% Similarity=0.005 Sum_probs=76.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhh-HHHHHHH
Q 012639 147 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGS-SIRVLQN 225 (459)
Q Consensus 147 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs-~~~~l~~ 225 (459)
|-||+-..++.+...++.+.|.+....-.|++||--..|+++++++++. .++|+++|+|.. .|. ..+++.+
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~fL~-----~G~H~~~DIp~ 213 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLFIA-----DGFHTQEDIPE 213 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeeecc-----cCcchHhHHHH
Confidence 6678765555555555555554433223577787668999999998874 489999999963 332 3344555
Q ss_pred HHHHhc------cCC----CCcEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 012639 226 IFREDA------YLS----RLPVSIIRSWYQREGYVNSMADLIQKELGKF 265 (459)
Q Consensus 226 ~~~~~~------~~~----~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~ 265 (459)
.+.... ..+ +..+.+.++.+.||.+++.+++++++++...
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~ 263 (279)
T PRK02395 214 DMGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADV 263 (279)
T ss_pred HHHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCc
Confidence 433221 123 4568889999999999999999999987654
No 38
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.36 E-value=0.00067 Score=58.40 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=50.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCC
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 209 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyP 209 (459)
+|=||+... .+..+.|++.+.+.+. ..|++||-=+.|+++++++++.+.|+++|+++|++.
T Consensus 6 vgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~L 66 (103)
T cd03413 6 MGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLML 66 (103)
T ss_pred EECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehhh
Confidence 466788775 3677788888876654 678888855999999999999999999999999985
No 39
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.001 Score=65.78 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=85.0
Q ss_pred EEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEE
Q 012639 272 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 351 (459)
Q Consensus 272 ~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvV 351 (459)
.+|..+||.+.. .+....++.+..+.++. -...++.+|- +-.+|+++++++.+..+|+++|+|
T Consensus 4 ~~llvgHGsr~p-------~~~~~~~~~a~~~~~~~----~~~~v~~~f~------e~~~P~l~~~~~al~~~G~~~ivv 66 (245)
T COG2138 4 ALLLVGHGSRLP-------RGREVAEAIAARLEERG----DFPPVRVAFL------ELAEPSLREALQALVARGVDRIVV 66 (245)
T ss_pred ceeeeecCCCCc-------cHHHHHHHHHHHHHhhc----CCccchhHHH------HhcCCCHHHHHHHHHhcCCCeEEE
Confidence 588999998532 23555555555455543 2235666662 335799999999999999999999
Q ss_pred EcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCC
Q 012639 352 IPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPS 409 (459)
Q Consensus 352 vPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~ 409 (459)
||..+.. -..|..||-.+......+.+...+. .++.||.+.+.+.+++.+....
T Consensus 67 VPlfl~~-g~H~~~DIP~~L~~~~~~~~~~~~~---p~G~~~~~~~~~~~r~~~~~~~ 120 (245)
T COG2138 67 VPLFLAA-GYHTKRDIPAELGLARQAHPQVDLS---PLGTHPAVLDLLGQRLEDAGAD 120 (245)
T ss_pred eehhhcc-CchhhcccHHHHHHhhhcCCccccc---ccCCchHHHHHHHHHHHHhccc
Confidence 9965555 3444889999888777777754432 7999999999999988776554
No 40
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.22 E-value=0.003 Score=64.73 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=69.1
Q ss_pred CCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEccc-----ccccchhh
Q 012639 289 GDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS-----FVSEHIET 363 (459)
Q Consensus 289 GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig-----FvsDhlET 363 (459)
|.|=....++.++.+.++|...+..-.+..++.- ..|+++++++++.++|+++|+++|.. +++.-.
T Consensus 64 ~SPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry-------~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~-- 134 (316)
T PF00762_consen 64 GSPLNEITRRQAEALQQRLDERGVDVEVYYAMRY-------GPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSY-- 134 (316)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH-EEEEEEEEESS-------SSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHH--
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCeeEEEEecc-------CCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHH--
Confidence 5555555556677777777543311123444432 37999999999999999999999972 222222
Q ss_pred hHhHHHHHHHHHHH-cCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCCc
Q 012639 364 LEEIDMEYKELALE-SGIENWGRVPALNCTPSFITDLADAVIEALPSA 410 (459)
Q Consensus 364 L~EidiE~ke~a~e-~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~~ 410 (459)
+.+ ..+...+ .....+..++...+||.|++++++.|.++++..
T Consensus 135 ~~~----~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~ 178 (316)
T PF00762_consen 135 LDE----VERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREALERF 178 (316)
T ss_dssp HHH----HHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHHTTS
T ss_pred HHH----HHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHHHhc
Confidence 222 2222223 344479999999999999999999999998865
No 41
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=97.20 E-value=0.004 Score=63.79 Aligned_cols=130 Identities=20% Similarity=0.289 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcCCC-CCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcc-----cccccchhhhHhHHHH
Q 012639 297 EECIYLIMQRLKDRGIN-NDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPV-----SFVSEHIETLEEIDME 370 (459)
Q Consensus 297 ~~t~~~v~e~L~~~g~~-~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPi-----gFvsDhlETL~EidiE 370 (459)
++-++++.++| +.. ..+.+++ .-..|+++|++++|.++|+++++++|. .+++.-. ..++
T Consensus 76 ~~q~~~L~~~L---~~~~~~V~~am-------ry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~--~~~~--- 140 (320)
T COG0276 76 RAQAAALEERL---DLPDFKVYLAM-------RYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSY--VDEL--- 140 (320)
T ss_pred HHHHHHHHHHh---CCCCccEEEee-------cCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHH--HHHH---
Confidence 45566777777 321 1233333 224899999999999999999999997 2333333 3332
Q ss_pred HHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCCC------CCCCh-hHHHHHHHHHHHH
Q 012639 371 YKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSAL---AMSAPKNISQE------DDHNP-VRYAIKMFFGSIL 440 (459)
Q Consensus 371 ~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~~~---~~~~~~~~~c~------~c~~~-~~~~~k~~~~~~~ 440 (459)
.+.+.+..+...+..++...++|.||+++|+.|.+.++... .+=.=..+.+| +.-|+ .|.++-.-.++.|
T Consensus 141 ~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~l 220 (320)
T COG0276 141 ARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEAL 220 (320)
T ss_pred HHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHHc
Confidence 12222222445799999999999999999999999988653 11000113333 23344 6777766655554
Q ss_pred H
Q 012639 441 A 441 (459)
Q Consensus 441 ~ 441 (459)
.
T Consensus 221 g 221 (320)
T COG0276 221 G 221 (320)
T ss_pred C
Confidence 3
No 42
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.23 E-value=0.056 Score=48.69 Aligned_cols=59 Identities=19% Similarity=0.416 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEeeee--c-----cCCCHHHHHHHHHHCCCCEEEEEec-CC
Q 012639 149 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR--Y-----WYPFTEEAVQQIKRDRITRLVVLPL-YP 209 (459)
Q Consensus 149 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amr--Y-----~~P~i~eaL~~L~~~Gv~rIvvlPL-yP 209 (459)
|.|-...+.+.++++.++|... ...+.+||. . ..|+++++|+++.++|+++|+++|. |.
T Consensus 36 gd~Y~~~~~~~~~~v~~~l~~~--~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~ 102 (135)
T cd00419 36 GDPYPDQCEETARLVAERLGLP--FDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFV 102 (135)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccc
Confidence 5788888888999999888531 223555553 2 3999999999999999999999999 64
No 43
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=95.31 E-value=0.13 Score=51.50 Aligned_cols=105 Identities=18% Similarity=0.344 Sum_probs=69.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhh-HHH----
Q 012639 147 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGS-SIR---- 221 (459)
Q Consensus 147 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs-~~~---- 221 (459)
|=|+|-... .--.+|+..|++.+ .-+|++|.-=+.|.+++++++|++.|+++|.++|+.- ..|. +.+
T Consensus 148 GHGt~h~an--~~Y~~l~~~l~~~~-~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMl-----VAGdHa~nDmaG 219 (262)
T PF06180_consen 148 GHGTPHPAN--AAYSALQAMLKKHG-YPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLML-----VAGDHAKNDMAG 219 (262)
T ss_dssp E---SCHHH--HHHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESS-----S--HHHHCCCCS
T ss_pred eCCCCCCcc--HHHHHHHHHHHhCC-CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEeccc-----ccchhhhhhhcC
Confidence 667777543 35677888888753 2358999988999999999999999999999999973 4443 222
Q ss_pred ----HHHHHHHHhccCCCCcE-EEecCCCCCHHHHHHHHHHHHHHHh
Q 012639 222 ----VLQNIFREDAYLSRLPV-SIIRSWYQREGYVNSMADLIQKELG 263 (459)
Q Consensus 222 ----~l~~~~~~~~~~~~~~~-~~i~~~~~~p~yI~ala~~I~~~l~ 263 (459)
-+...+++.+ +.+ .+.+..+.+|.+.+.|.++|+++++
T Consensus 220 de~dSWks~L~~~G----~~v~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 220 DEEDSWKSRLEAAG----FEVTCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp SSTTSHHHHHHHTT-----EEEE----GGGSHHHHHHHHHHHHHHH-
T ss_pred CCcchHHHHHHHCC----CEEEEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 2333444432 233 3467899999999999999999863
No 44
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=95.07 E-value=0.21 Score=50.99 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=64.4
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEcc----cc-cccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHH
Q 012639 330 LKPYTDEVLVELGQKGVKSLLAIPV----SF-VSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVI 404 (459)
Q Consensus 330 L~P~t~d~L~~L~~~G~k~VvVvPi----gF-vsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~ 404 (459)
-.|-|+|+++++.+.|++++|++|- +. ++.-. |.+|-..+++.-.+.++ .+..++.-..++.+|+++|+.|.
T Consensus 138 ~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSS--ln~l~r~~r~~~~~~~~-~wsiIdrW~t~~glIkafA~~I~ 214 (395)
T KOG1321|consen 138 AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSS--LNELWRQFREDGYERDI-KWSIIDRWPTREGLIKAFAENIE 214 (395)
T ss_pred cCcccHHHHHHHHhcCceeEEeeccCCceeeecCccc--HHHHHHHHHhcCcccCC-ceEeeccccccchHHHHHHHHHH
Confidence 3899999999999999999999985 22 23555 77777777777667777 48899999999999999999999
Q ss_pred HHcCC
Q 012639 405 EALPS 409 (459)
Q Consensus 405 e~l~~ 409 (459)
+.|+.
T Consensus 215 keL~~ 219 (395)
T KOG1321|consen 215 KELQT 219 (395)
T ss_pred HHHHh
Confidence 98874
No 45
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=94.24 E-value=0.41 Score=44.08 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEccc
Q 012639 297 EECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS 355 (459)
Q Consensus 297 ~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig 355 (459)
++.++.+.++|...+ .++.+ .+|-.=| .|+++|+|+++.+.|+++|+++|..
T Consensus 71 ~~q~~~l~~~L~~~~--~~~~v----~~amry~-~P~i~~~l~~l~~~g~~~iivlPl~ 122 (159)
T cd03411 71 RAQAEALEKALDERG--IDVKV----YLAMRYG-PPSIEEALEELKADGVDRIVVLPLY 122 (159)
T ss_pred HHHHHHHHHHHhccC--CCcEE----EehHhcC-CCCHHHHHHHHHHcCCCEEEEEECC
Confidence 455666777763322 12222 1221113 7999999999999999999999984
No 46
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=90.96 E-value=2.9 Score=40.90 Aligned_cols=86 Identities=14% Similarity=0.280 Sum_probs=62.7
Q ss_pred eEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHH----HHHHHHHHHhccCCCCc-EEEecCCCCCHH
Q 012639 175 NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI----RVLQNIFREDAYLSRLP-VSIIRSWYQREG 249 (459)
Q Consensus 175 ~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~----~~l~~~~~~~~~~~~~~-~~~i~~~~~~p~ 249 (459)
.|++|--=+.|.+..+++.|++.|++++-++|+...-....+-... +.+...+++.+ .+ -.+....+..|.
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G----~~v~~~l~GLGE~~~ 244 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNG----FKVEVYLHGLGENPA 244 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCC----ceeEEEeecCCCcHH
Confidence 7888888899999999999999999999999997432211111111 23334444432 22 345778999999
Q ss_pred HHHHHHHHHHHHHhh
Q 012639 250 YVNSMADLIQKELGK 264 (459)
Q Consensus 250 yI~ala~~I~~~l~~ 264 (459)
+.+.+.++|+.+++.
T Consensus 245 iq~ifi~Hik~aie~ 259 (265)
T COG4822 245 IQAIFIDHIKDAIER 259 (265)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999865
No 47
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=83.40 E-value=6 Score=35.48 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=68.0
Q ss_pred EEEEEccCCCCCcCcHHHHHHhhcCCC--CeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHH
Q 012639 85 GVLLLNLGGPDTLHDVQPFLFNLFADP--DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 162 (459)
Q Consensus 85 aVLLlnlG~P~s~~dV~~fL~~~l~D~--~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~ 162 (459)
-|+|.+.|+ +--+-=..|..+||.+. +|++++.. .+...++...+ .+....|+ -|-+..-+......
T Consensus 4 ~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~-----~s~e~~v~aa~----e~~adii~-iSsl~~~~~~~~~~ 72 (132)
T TIGR00640 4 RILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLF-----QTPEEIARQAV----EADVHVVG-VSSLAGGHLTLVPA 72 (132)
T ss_pred EEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCC-----CCHHHHHHHHH----HcCCCEEE-EcCchhhhHHHHHH
Confidence 488889998 43333356888888877 67777631 12334443321 23444454 47788888888899
Q ss_pred HHHHHHhcCC-CceEEeeeeccCCCHHHHHHHHHHCCCCEEE
Q 012639 163 LKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 203 (459)
Q Consensus 163 L~~~L~~~~~-~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIv 203 (459)
+.+.|++.+. +..|.+| +.+. .+-.+++++.|+++++
T Consensus 73 ~~~~L~~~g~~~i~vivG---G~~~-~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 73 LRKELDKLGRPDILVVVG---GVIP-PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHhcCCCCCEEEEe---CCCC-hHhHHHHHHCCCCEEE
Confidence 9999988765 5677776 3332 3446778999999875
No 48
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=81.66 E-value=18 Score=35.30 Aligned_cols=133 Identities=16% Similarity=0.242 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCC-CCeeEEEecCccC----
Q 012639 252 NSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHTLAYQSRVGP---- 326 (459)
Q Consensus 252 ~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~-~~~~lafQSr~G~---- 326 (459)
+++...+.+.++..+. ..+++-.||- +..+.+-+..+++ +...+ +++ ..+..+|.|....
T Consensus 2 ~~~~~~~~~~l~~~~~---~~vlvfVHGy--------n~~f~~a~~r~aq-l~~~~---~~~~~~i~FsWPS~g~~~~Y~ 66 (233)
T PF05990_consen 2 AAFQAQLNQRLAKSPD---KEVLVFVHGY--------NNSFEDALRRAAQ-LAHDL---GFPGVVILFSWPSDGSLLGYF 66 (233)
T ss_pred hHHHHHHHHHHhhCCC---CeEEEEEeCC--------CCCHHHHHHHHHH-HHHHh---CCCceEEEEEcCCCCChhhhh
Confidence 3566677777765432 2477788986 2345555666655 44445 554 3467888886533
Q ss_pred -----CCCCCCcHHHHHHHhhhc-CCceEEEEcccccc-cchhhhHhHHHHHH--HHHHHcCCeeEEEcCCCCCCHHHHH
Q 012639 327 -----VKWLKPYTDEVLVELGQK-GVKSLLAIPVSFVS-EHIETLEEIDMEYK--ELALESGIENWGRVPALNCTPSFIT 397 (459)
Q Consensus 327 -----~~WL~P~t~d~L~~L~~~-G~k~VvVvPigFvs-DhlETL~EidiE~k--e~a~e~G~~~~~rvp~LNd~p~fi~ 397 (459)
..|.+|.+.+.|+.|.+. |.++|.++.=+.=+ =-+|+|..+..+.. +.... +.++..+.+=-+...|.+
T Consensus 67 ~d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~--~~~viL~ApDid~d~f~~ 144 (233)
T PF05990_consen 67 YDRESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKAR--FDNVILAAPDIDNDVFRS 144 (233)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhh--hheEEEECCCCCHHHHHH
Confidence 347788888999999988 89999999876555 33566777766654 22222 334555554445566666
Q ss_pred HHHH
Q 012639 398 DLAD 401 (459)
Q Consensus 398 aLad 401 (459)
.+..
T Consensus 145 ~~~~ 148 (233)
T PF05990_consen 145 QLPD 148 (233)
T ss_pred HHHH
Confidence 6553
No 49
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.17 E-value=14 Score=39.78 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=76.9
Q ss_pred HHHHHHCCCCEEEEEecC-CccccCChh--hHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHH--HHHHHhhc
Q 012639 191 VQQIKRDRITRLVVLPLY-PQFSISTTG--SSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADL--IQKELGKF 265 (459)
Q Consensus 191 L~~L~~~Gv~rIvvlPLy-PqyS~~Ttg--s~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~--I~~~l~~~ 265 (459)
+++|+++|+++|+++-+- -.|-.-..+ ..+-++.+.+.+-.....++++.+.+..-.+.+|+++++. +-.+
T Consensus 182 v~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~---- 257 (437)
T COG0621 182 VKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPH---- 257 (437)
T ss_pred HHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCccccc----
Confidence 446788999999999872 111111111 1222333333331112345567777777788888888763 2222
Q ss_pred CCCCceEEEEeeCCCchhh-----ccccCCcc-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHH
Q 012639 266 QKPEEVMIFFSAHGVPVSY-----VEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLV 339 (459)
Q Consensus 266 ~~~~~~~LLFSaHGlP~~~-----v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~ 339 (459)
.| +|+.. ...-+-.| ..+..+.++.+.+.....-+..++-++| |.+ ++-+.+++++
T Consensus 258 -----------lH-lPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGF-----PgE-TeedFe~tl~ 319 (437)
T COG0621 258 -----------LH-LPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGF-----PGE-TEEDFEETLD 319 (437)
T ss_pred -----------cc-CccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEEC-----CCC-CHHHHHHHHH
Confidence 22 33221 11112346 4555555555555442111112233333 444 5678888888
Q ss_pred HhhhcCCceEEEEcc
Q 012639 340 ELGQKGVKSLLAIPV 354 (459)
Q Consensus 340 ~L~~~G~k~VvVvPi 354 (459)
-+.+-+..++-++++
T Consensus 320 lv~e~~fd~~~~F~Y 334 (437)
T COG0621 320 LVEEVRFDRLHVFKY 334 (437)
T ss_pred HHHHhCCCEEeeeec
Confidence 888889999999988
No 50
>PRK10481 hypothetical protein; Provisional
Probab=78.70 E-value=29 Score=34.13 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=104.4
Q ss_pred cHHHHHHhhcCCCCeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHHHHHHHHhcCCCceEEe
Q 012639 99 DVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYV 178 (459)
Q Consensus 99 dV~~fL~~~l~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~ 178 (459)
||-|=|..++.++.|.... .|. .+-...+.+.|.-..|..+|. .+|. ..-.|.+
T Consensus 17 dv~p~i~~~l~~~~i~~~g--------~Ld----~l~~~ei~~~~ap~~~~~~lv-----------trL~---dG~~v~~ 70 (224)
T PRK10481 17 DVLPLLTEYLDEDEITHAG--------LLD----GLSREEIMAAYAPEAGEDVLV-----------TRLN---DGQQVHV 70 (224)
T ss_pred hhhHHHHHhcCCcceEEec--------ccC----CCCHHHHHHhcCCCCCCceeE-----------EEec---CCCEEEE
Confidence 6667777777776655432 122 222223335566555543333 2332 2456889
Q ss_pred eeeccCCCHHHHHHHHHHCCCCEEEEEec--CCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHH
Q 012639 179 GMRYWYPFTEEAVQQIKRDRITRLVVLPL--YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMAD 256 (459)
Q Consensus 179 amrY~~P~i~eaL~~L~~~Gv~rIvvlPL--yPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~ 256 (459)
+=++..|.+.+.+++|.++|++-|+++.. ||-..... . .-..+.+.| +.++.|+..
T Consensus 71 s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r-------------~---~l~~P~~~i------~~lv~Al~~ 128 (224)
T PRK10481 71 SKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARN-------------A---ILLEPSRIL------PPLVAAIVG 128 (224)
T ss_pred EHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccC-------------c---cccCchhhH------HHHHHHhcC
Confidence 99999999999999999999999999886 33211000 0 000012222 334443321
Q ss_pred HHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCC--cH
Q 012639 257 LIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKP--YT 334 (459)
Q Consensus 257 ~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P--~t 334 (459)
.+...++ -||+.++....+...+. |+ +..++-.| +|..+ .+
T Consensus 129 -----------g~riGVi---------------tP~~~qi~~~~~kw~~~----G~--~v~~~~as-----py~~~~~~l 171 (224)
T PRK10481 129 -----------GHQVGVI---------------VPVEEQLAQQAQKWQVL----QK--PPVFALAS-----PYHGSEEEL 171 (224)
T ss_pred -----------CCeEEEE---------------EeCHHHHHHHHHHHHhc----CC--ceeEeecC-----CCCCCHHHH
Confidence 1233332 37887777766555433 54 33333323 33333 46
Q ss_pred HHHHHHhhhcCCceEEEEcccccccchhhh
Q 012639 335 DEVLVELGQKGVKSLLAIPVSFVSEHIETL 364 (459)
Q Consensus 335 ~d~L~~L~~~G~k~VvVvPigFvsDhlETL 364 (459)
.++.++|...|..-|++-|.||.++|.+.+
T Consensus 172 ~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~l 201 (224)
T PRK10481 172 IDAGKELLDQGADVIVLDCLGYHQRHRDLL 201 (224)
T ss_pred HHHHHHhhcCCCCEEEEeCCCcCHHHHHHH
Confidence 667777888899999999999998666443
No 51
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=76.56 E-value=1e+02 Score=32.12 Aligned_cols=141 Identities=12% Similarity=0.133 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHHHhhcC-CCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCcc
Q 012639 247 REGYVNSMADLIQKELGKFQ-KPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVG 325 (459)
Q Consensus 247 ~p~yI~ala~~I~~~l~~~~-~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G 325 (459)
.+.|++++.+.|+...+.++ ....+.-||-+-|+|.-. -..++.+..+.+.+.. ++..+++++.-+.-+
T Consensus 35 ~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l-------~~~~l~~ll~~i~~~~---~~~~~~e~t~e~~p~ 104 (375)
T PRK05628 35 PDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLL-------GAEGLARVLDAVRDTF---GLAPGAEVTTEANPE 104 (375)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccC-------CHHHHHHHHHHHHHhC---CCCCCCEEEEEeCCC
Confidence 35688888888776544432 112355677777777432 1345556666665554 443334444433211
Q ss_pred CCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhH-----hHHHHHHHHHHHcCCeeE--E-EcCCCCCCHHHHH
Q 012639 326 PVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIENW--G-RVPALNCTPSFIT 397 (459)
Q Consensus 326 ~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EidiE~ke~a~e~G~~~~--~-rvp~LNd~p~fi~ 397 (459)
--+++.|+.|.+.|+++|-+=.=+|-.+.++.+. +-..+.-+.+.+.|+.++ . .+-.++.+..=+.
T Consensus 105 ------~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~ 178 (375)
T PRK05628 105 ------STSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWR 178 (375)
T ss_pred ------CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHH
Confidence 1246778888888887776655455555555442 223344456667777522 2 2333555554333
Q ss_pred HHHHHH
Q 012639 398 DLADAV 403 (459)
Q Consensus 398 aLadlV 403 (459)
.-.+.+
T Consensus 179 ~tl~~~ 184 (375)
T PRK05628 179 ASLDAA 184 (375)
T ss_pred HHHHHH
Confidence 333333
No 52
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=73.70 E-value=12 Score=33.64 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecC
Q 012639 244 WYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSR 323 (459)
Q Consensus 244 ~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr 323 (459)
.+..+.-.+.+.+.|+..++.. +++ ..|++|+||-| .-|-.| ++++|++.|-..|...++..-|-+.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~-KpLVlSfHG~t-----GtGKn~------v~~liA~~ly~~G~~S~~V~~f~~~ 93 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPR-KPLVLSFHGWT-----GTGKNF------VSRLIAEHLYKSGMKSPFVHQFIAT 93 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCC-CCEEEEeecCC-----CCcHHH------HHHHHHHHHHhcccCCCceeeeccc
Confidence 3456667777788888877652 333 46999999987 346677 5778888876667765666666554
No 53
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=72.72 E-value=41 Score=32.79 Aligned_cols=195 Identities=19% Similarity=0.297 Sum_probs=98.0
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHH
Q 012639 148 GGSP-LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 226 (459)
Q Consensus 148 ggSP-L~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~ 226 (459)
|.+| -.+.|-++.++|++ .++-|+.|..|- +++++.++ +..-..+.++++-....-.+.
T Consensus 29 ~~dpH~~~~~p~d~~~l~~------Adlvv~~G~~~e-~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~---------- 88 (256)
T PF01297_consen 29 GADPHDYEPTPSDIKKLQK------ADLVVYNGLGLE-PWLEKLLE---SSQNPKVKVIDLSEGIDLDHH---------- 88 (256)
T ss_dssp TSCTTT----HHHHHHHHH------SSEEEES-TTTS-CCHHHHHH---TTTTTTTEEEETTTTS-GSTT----------
T ss_pred CCccccccCChHHHHHHHh------CCEEEEeCCccc-hhhhhhhh---cccccccceEEeecccccccC----------
Confidence 4444 45667777777764 377888886665 88887772 233445666676553311000
Q ss_pred HHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHH
Q 012639 227 FREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQR 306 (459)
Q Consensus 227 ~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~ 306 (459)
.. =+|+|-+|.....+++.|.+.|.+.. |+.. ...++|-..|..++.+..+.+.+.
T Consensus 89 -------~~-----npH~Wldp~~~~~~~~~Ia~~L~~~~-P~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~ 144 (256)
T PF01297_consen 89 -------GH-----NPHVWLDPENAKKMAEAIADALSELD-PANK-----------DYYEKNAEKYLKELDELDAEIKEK 144 (256)
T ss_dssp -------CB-----ESTGGGSHHHHHHHHHHHHHHHHHHT-GGGH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CC-----CCchHHHHHHHHHHHHHHHHHHHHhC-ccch-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 23567778888788888877776542 1110 111223344555666655555555
Q ss_pred HhhcCCCCCe------------------eEEEecCccCCCCCCCcHH---HHHHHhhhcCCceEEEEcccccccchhhhH
Q 012639 307 LKDRGINNDH------------------TLAYQSRVGPVKWLKPYTD---EVLVELGQKGVKSLLAIPVSFVSEHIETLE 365 (459)
Q Consensus 307 L~~~g~~~~~------------------~lafQSr~G~~~WL~P~t~---d~L~~L~~~G~k~VvVvPigFvsDhlETL~ 365 (459)
+.. +.... .++.+ ..++. .+|+.. +..+.+.+.|++ +++....+-...+++
T Consensus 145 ~~~--~~~~~~v~~h~~~~Y~~~~~gl~~~~~~-~~~~~--~~ps~~~l~~l~~~ik~~~v~-~i~~e~~~~~~~~~~-- 216 (256)
T PF01297_consen 145 LAK--LPGRPVVVYHDAFQYFAKRYGLKVIGVI-EISPG--EEPSPKDLAELIKLIKENKVK-CIFTEPQFSSKLAEA-- 216 (256)
T ss_dssp HTT--SSGGEEEEEESTTHHHHHHTT-EEEEEE-SSSSS--SSS-HHHHHHHHHHHHHTT-S-EEEEETTS-THHHHH--
T ss_pred hhc--ccCCeEEEEChHHHHHHHhcCCceeeee-ccccc--cCCCHHHHHHHHHHhhhcCCc-EEEecCCCChHHHHH--
Confidence 531 11111 11222 11221 234433 334445555654 445555655554443
Q ss_pred hHHHHHHHHHHHcCCeeEEEcCCC----CCCHHHHHHHHHHH
Q 012639 366 EIDMEYKELALESGIENWGRVPAL----NCTPSFITDLADAV 403 (459)
Q Consensus 366 EidiE~ke~a~e~G~~~~~rvp~L----Nd~p~fi~aLadlV 403 (459)
++++.|++ +..+..+ .+.+.+++.+.+.+
T Consensus 217 --------la~~~g~~-vv~ld~l~~~~~~~~~y~~~~~~n~ 249 (256)
T PF01297_consen 217 --------LAKETGVK-VVYLDPLGGGIPDGDSYLDMMEQNL 249 (256)
T ss_dssp --------HHHCCT-E-EEESSTTCSTTSSTTSHHHHHHHHH
T ss_pred --------HHHHcCCc-EEEeCCCcCCCCCcCCHHHHHHHHH
Confidence 47788986 5677777 55556776665544
No 54
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=72.53 E-value=71 Score=30.98 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=53.7
Q ss_pred CceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccc------cCChhhHHHHHHHHHHH----hccCCCCcEEEec
Q 012639 173 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFS------ISTTGSSIRVLQNIFRE----DAYLSRLPVSIIR 242 (459)
Q Consensus 173 ~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS------~~Ttgs~~~~l~~~~~~----~~~~~~~~~~~i~ 242 (459)
+.+|.+++-=..|...+..+..++.|-+=++-+||-|+-- ..+++..-+++.+.+.. -.....+.=+...
T Consensus 20 p~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS 99 (213)
T PF04748_consen 20 PFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGS 99 (213)
T ss_dssp STTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-C
T ss_pred CCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCc
Confidence 6778888887889999999999999999999999988751 11222233344443332 2122233456666
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 012639 243 SWYQREGYVNSMADLIQK 260 (459)
Q Consensus 243 ~~~~~p~yI~ala~~I~~ 260 (459)
.+..++...+.+.+.+++
T Consensus 100 ~~T~~~~~m~~vl~~l~~ 117 (213)
T PF04748_consen 100 RFTSDREAMRWVLEVLKE 117 (213)
T ss_dssp CHHC-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 788888888777666543
No 55
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=70.52 E-value=1.4e+02 Score=30.97 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 012639 248 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 327 (459)
Q Consensus 248 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~ 327 (459)
..|++++.+.|...++.++. ..+.-|+-+-|+|.-. -..++.+..+.|.+.+ ++....+++.-+.-+
T Consensus 30 ~~y~~~l~~Ei~~~~~~~~~-~~v~~i~~GGGtPs~l-------~~~~l~~ll~~i~~~~---~~~~~~eitie~np~-- 96 (360)
T TIGR00539 30 EEYTQALCQDLKHALSQTDQ-EPLESIFIGGGTPNTL-------SVEAFERLFESIYQHA---SLSDDCEITTEANPE-- 96 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcccEEEeCCCchhcC-------CHHHHHHHHHHHHHhC---CCCCCCEEEEEeCCC--
Confidence 45888888888765544432 2245667777777432 2456666666666554 333334555544321
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhH-----hHHHHHHHHHHHcCCeeEE---EcCCCCCCHH-HHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIENWG---RVPALNCTPS-FITD 398 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EidiE~ke~a~e~G~~~~~---rvp~LNd~p~-fi~a 398 (459)
--+++.|+.|++.|+.+|-+=.=+|-.+.+..+. +-..+.-+.+.+.|+.++. ..-.++.+.. |.+.
T Consensus 97 ----~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~ 172 (360)
T TIGR00539 97 ----LITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEE 172 (360)
T ss_pred ----CCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHH
Confidence 1356788888888988776644455544444432 2223445667788885432 2334566654 4444
Q ss_pred HH
Q 012639 399 LA 400 (459)
Q Consensus 399 La 400 (459)
+.
T Consensus 173 l~ 174 (360)
T TIGR00539 173 LK 174 (360)
T ss_pred HH
Confidence 43
No 56
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=65.74 E-value=1.3e+02 Score=28.70 Aligned_cols=126 Identities=17% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHHHCCCCEEEEEecCCccccC--ChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 012639 191 VQQIKRDRITRLVVLPLYPQFSIS--TTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKP 268 (459)
Q Consensus 191 L~~L~~~Gv~rIvvlPLyPqyS~~--Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~ 268 (459)
+..+.+.|.+=+.++-+.|..... ..+...+.+.+..+.. ++++.+++--.+.+.|.+.+.+.+++..++ + -
T Consensus 16 l~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~l----gipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g-~ 89 (194)
T cd01994 16 LYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAM----GIPLIRIEISGEEEDEVEDLKELLRKLKEE-G-V 89 (194)
T ss_pred HHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHc----CCcEEEEeCCCCchHHHHHHHHHHHHHHHc-C-C
Confidence 445556776544444444442211 0111233444333332 456666664447899999998888776433 1 1
Q ss_pred CceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCce
Q 012639 269 EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKS 348 (459)
Q Consensus 269 ~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~ 348 (459)
+ .++ .||-+-+...+-.+.+++++ |+. +- -|. |-.| .++.++++.+.|.+-
T Consensus 90 ~--~vv-------------~G~i~sd~~~~~~e~~~~~~---gl~--------~~-~PL-W~~~-~~~ll~e~~~~g~~~ 140 (194)
T cd01994 90 D--AVV-------------FGAILSEYQRTRVERVCERL---GLE--------PL-APL-WGRD-QEELLREMIEAGFKA 140 (194)
T ss_pred C--EEE-------------ECccccHHHHHHHHHHHHHc---CCE--------EE-ecc-cCCC-HHHHHHHHHHcCCeE
Confidence 1 232 25555444455666788887 762 21 122 7654 466999999999987
Q ss_pred EEE
Q 012639 349 LLA 351 (459)
Q Consensus 349 VvV 351 (459)
+++
T Consensus 141 ~iv 143 (194)
T cd01994 141 III 143 (194)
T ss_pred EEE
Confidence 663
No 57
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.73 E-value=1.3e+02 Score=30.22 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=89.6
Q ss_pred CceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccc----------cCChhhHHHHHHHHHHHhccCCCCcEEEec
Q 012639 173 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFS----------ISTTGSSIRVLQNIFREDAYLSRLPVSIIR 242 (459)
Q Consensus 173 ~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS----------~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~ 242 (459)
+-+|.+|+-=..|...+-.++.++.|-+=++=+||-|.-- ..+.+...+.+.+++.+..+.-.+-=+...
T Consensus 52 p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs 131 (250)
T COG2861 52 PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNNHMGS 131 (250)
T ss_pred CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehhhhhh
Confidence 4578888888888889999999999999999999977432 112223344444444442222223334455
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccH------------HHHHHHHHHHHHHHhhc
Q 012639 243 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYR------------DQMEECIYLIMQRLKDR 310 (459)
Q Consensus 243 ~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~------------~q~~~t~~~v~e~L~~~ 310 (459)
.+-.++...+.+.+.+++.---|- ++. -++||++.+...+-|-||. ..+.+-.+......+..
T Consensus 132 ~~tsn~~aM~~~m~~Lk~r~l~fl-Ds~----T~a~S~a~~iAk~~gVp~~~rdvfLD~e~~~~~V~kql~~~~~~Ark~ 206 (250)
T COG2861 132 RFTSNEDAMEKLMEALKERGLYFL-DSG----TIANSLAGKIAKEIGVPVIKRDVFLDDEDTEAAVLKQLDAAEKLARKN 206 (250)
T ss_pred hhcCcHHHHHHHHHHHHHCCeEEE-ccc----ccccchhhhhHhhcCCceeeeeeeecCcCCHHHHHHHHHHHHHHHHhc
Confidence 666676666666555443210010 111 1677776665433332321 12222111111111111
Q ss_pred CCCCCeeEEEecCccCCCCCCCcHHHHHHHhhh-cCCceEEEEcccc
Q 012639 311 GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQ-KGVKSLLAIPVSF 356 (459)
Q Consensus 311 g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~-~G~k~VvVvPigF 356 (459)
|. .+ .+|.. .|.|-++|++... .+.+.|-+||++=
T Consensus 207 G~----ai----~IGh~---~~~Tv~vl~~~~~~l~~~gIelV~~s~ 242 (250)
T COG2861 207 GS----AI----GIGHP---HKNTVAVLQQWLDELPARGIELVPVSA 242 (250)
T ss_pred Cc----eE----EecCC---chhHHHHHHHHHHhCCCCCeEEecHHH
Confidence 21 11 12432 6888888887654 3557888888753
No 58
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=61.32 E-value=13 Score=37.77 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHH---HHhhcCCCCceEEEEeeCCCchhhc
Q 012639 219 SIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK---ELGKFQKPEEVMIFFSAHGVPVSYV 285 (459)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~---~l~~~~~~~~~~LLFSaHGlP~~~v 285 (459)
.++.++++++++ +. ++.+....=-++..++.|.++=.- .+.+. |++..+||||||+|....
T Consensus 19 AI~ive~al~~~---g~-pIyv~~eIVHN~~Vv~~L~~~g~~fve~l~e~--p~~~~VIfsAHGVs~~v~ 82 (294)
T COG0761 19 AIQIVERALEEY---GA-PIYVRHEIVHNRYVVDRLREKGAIFVEELDEV--PDGATVIFSAHGVSPAVR 82 (294)
T ss_pred HHHHHHHHHHHc---CC-CeEEEeccccCHHHHHHHHHcCCEeccccccC--CCCCEEEEECCCCCHHHH
Confidence 344555555553 22 354444444455555555543111 12233 345589999999997653
No 59
>PRK05660 HemN family oxidoreductase; Provisional
Probab=60.76 E-value=2.2e+02 Score=29.81 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 012639 248 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 327 (459)
Q Consensus 248 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~ 327 (459)
..|++++.+.|+..++.... ..+.-||-+-|+|.-. =..++.+.++.+.+.+ ++....+++.-+.-+
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~~-~~v~ti~~GGGtPs~l-------~~~~l~~ll~~l~~~~---~~~~~~eit~e~np~-- 103 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQG-REVHSIFIGGGTPSLF-------SAEAIQRLLDGVRARL---PFAPDAEITMEANPG-- 103 (378)
T ss_pred HHHHHHHHHHHHHHhHhccC-CceeEEEeCCCccccC-------CHHHHHHHHHHHHHhC---CCCCCcEEEEEeCcC--
Confidence 45899998888765443321 2356778888888542 1456666677776665 443334566555322
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhh-----HhHHHHHHHHHHHcCCe--eEEEcCC-CCCCHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETL-----EEIDMEYKELALESGIE--NWGRVPA-LNCTPSF 395 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL-----~EidiE~ke~a~e~G~~--~~~rvp~-LNd~p~f 395 (459)
--+.+.|+.|.+.|+.+|-+=.=+|-.+.+..+ .+-..+.-+.+.+.|+. ++..+-. ++.+..-
T Consensus 104 ----~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~ 175 (378)
T PRK05660 104 ----TVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEE 175 (378)
T ss_pred ----cCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHH
Confidence 124578888888898888775556655555433 22234445677788885 3444443 4444443
No 60
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=53.79 E-value=2.9e+02 Score=29.14 Aligned_cols=133 Identities=22% Similarity=0.255 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 012639 248 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 327 (459)
Q Consensus 248 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~ 327 (459)
..|++++.+.|+... .. ...+.-||-+-|+|.-. -+.++.+..+.|.+.+ ++....+++.-.. |.
T Consensus 47 ~~Y~~~L~~Ei~~~~-~~--~~~i~~iy~GGGTps~l-------~~~~l~~ll~~i~~~~---~~~~~~eit~E~~--P~ 111 (400)
T PRK07379 47 EEYVEVLCQEIAITP-SF--GQPLQTVFFGGGTPSLL-------SVEQLERILTTLDQRF---GIAPDAEISLEID--PG 111 (400)
T ss_pred HHHHHHHHHHHHHhh-cc--CCceeEEEECCCccccC-------CHHHHHHHHHHHHHhC---CCCCCCEEEEEeC--CC
Confidence 558888888876532 11 12466788888888532 2466777777777665 4433345554432 21
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHh-----HHHHHHHHHHHcCCee--EEEc-CCCCCCHH-HHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEE-----IDMEYKELALESGIEN--WGRV-PALNCTPS-FITD 398 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E-----idiE~ke~a~e~G~~~--~~rv-p~LNd~p~-fi~a 398 (459)
--+.+.|+.|++.|+.+|-+=.=+|-.+.+..+.. -..+..+.+.++|+.+ +..+ -.+|.+.. |.+.
T Consensus 112 ----~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~t 187 (400)
T PRK07379 112 ----TFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQAS 187 (400)
T ss_pred ----cCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHH
Confidence 12568899999999988887666666666554422 2234456677889873 3333 44566654 4443
Q ss_pred H
Q 012639 399 L 399 (459)
Q Consensus 399 L 399 (459)
+
T Consensus 188 l 188 (400)
T PRK07379 188 L 188 (400)
T ss_pred H
Confidence 3
No 61
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.21 E-value=1.3e+02 Score=29.05 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=28.4
Q ss_pred HHHhcCCCceEEe--eee--ccCCCHHHHHHHHHHCCCCEEEEEec
Q 012639 166 ALEAKNLPVNVYV--GMR--YWYPFTEEAVQQIKRDRITRLVVLPL 207 (459)
Q Consensus 166 ~L~~~~~~~~V~~--amr--Y~~P~i~eaL~~L~~~Gv~rIvvlPL 207 (459)
...+.|..+.+.. +++ +....+.+.++.+.+.|++.|.+...
T Consensus 123 ~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 123 AAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 3444454444443 556 77777888888888889988886655
No 62
>PRK03906 mannonate dehydratase; Provisional
Probab=50.86 E-value=25 Score=37.26 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=48.5
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 395 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~f 395 (459)
.|.+|+-...|+.+++.|++.|+..-...-.+-+=|+++| .+.|+..+++|. ++..+++++-|+.+
T Consensus 6 rw~g~~d~~~l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i-~~~~~~ie~~Gl-~~~vvEs~pv~~~I 71 (385)
T PRK03906 6 RWFGPNDPVTLEDIRQPGATGIVTALHDIPVGEVWPVEEI-LARKAEIEAAGL-EWSVVESVPVHEDI 71 (385)
T ss_pred EEeCCCCcchHHHHhcCCCCceeecCCCCCCCCCCCHHHH-HHHHHHHHHcCC-eEEEEeCCCccHHH
Confidence 5999988889999999999999954332223333344444 345777788999 58899999988765
No 63
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.70 E-value=1.5e+02 Score=29.38 Aligned_cols=194 Identities=13% Similarity=0.146 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhcc
Q 012639 153 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAY 232 (459)
Q Consensus 153 ~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~ 232 (459)
.+-|-+|.++|++ .++-|+.|.-+ +|.+...++.+ .+ ..++.+..- +. ..
T Consensus 40 y~~~p~d~~~l~~------ADliv~~G~~l-E~~~~k~~~~~--~~-~~v~~~~~~--------~~---------~~--- 89 (264)
T cd01020 40 FEPTPTDAAKVST------ADIVVYNGGGY-DPWMTKLLADT--KD-VIVIAADLD--------GH---------DD--- 89 (264)
T ss_pred CCCCHHHHHHHhh------CCEEEEeCCCc-hHHHHHHHHhc--CC-ceEEeeecc--------cc---------cC---
Confidence 3445566666653 37788888766 47777776655 22 223322110 00 00
Q ss_pred CCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCC
Q 012639 233 LSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI 312 (459)
Q Consensus 233 ~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~ 312 (459)
... .=+++|.+|.....+++.|.++|.+.+. +.. ...+++.+.|..++.+.-+.+.+.+.. +
T Consensus 90 ~~~----~dPH~Wldp~n~~~~a~~I~~~L~~~dP-~~~-----------~~y~~N~~~~~~~l~~l~~~~~~~~~~--~ 151 (264)
T cd01020 90 KEG----DNPHLWYDPETMSKVANALADALVKADP-DNK-----------KYYQANAKKFVASLKPLAAKIAELSAK--Y 151 (264)
T ss_pred CCC----CCCceecCHhHHHHHHHHHHHHHHHhCc-ccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh--C
Confidence 011 1345788999999999999999977532 110 111234455666666666666555531 1
Q ss_pred CCCeeEEEec-------CccCCC------------CCCCcH---HHHHHHhhhcCCceEEEEcccccccchhhhHhHHHH
Q 012639 313 NNDHTLAYQS-------RVGPVK------------WLKPYT---DEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDME 370 (459)
Q Consensus 313 ~~~~~lafQS-------r~G~~~------------WL~P~t---~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE 370 (459)
.+.--++|.- ++|-.. =-+|+. .+.++.+.+.++ +++++-+.+-+.-.|++
T Consensus 152 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v-~~if~e~~~~~k~~~~l------ 224 (264)
T cd01020 152 KGAPVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQI-DALIVNPQQASSATTNI------ 224 (264)
T ss_pred CCCeEEEeCchHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCC-CEEEeCCCCCcHHHHHH------
Confidence 1111122211 123110 123443 334444555565 45666666666555553
Q ss_pred HHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHH
Q 012639 371 YKELALESGIENWGRVPALNCTPSFITDLADA 402 (459)
Q Consensus 371 ~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadl 402 (459)
.+++++.|+........+.....+++.+.+.
T Consensus 225 -~~la~~~~~~v~~l~~~~~~~~~y~~~m~~n 255 (264)
T cd01020 225 -TGLAKRSGVPVVEVTETMPNGTTYLTWMLKQ 255 (264)
T ss_pred -HHHHHHcCCCEEeecCCCCCCCCHHHHHHHH
Confidence 3456777876433322222223455544433
No 64
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=49.78 E-value=3.5e+02 Score=28.84 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=26.3
Q ss_pred CeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEE-cc---cccccchhhhHhH
Q 012639 315 DHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI-PV---SFVSEHIETLEEI 367 (459)
Q Consensus 315 ~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv-Pi---gFvsDhlETL~Ei 367 (459)
+|.++ |.+.--.-|-.....+.|+-..++|. -|+|+ |. +.+..-=|++.+|
T Consensus 167 ~~dfv-qlq~ny~d~~n~~~~~~l~~A~~~~~-gI~IMeP~~gG~l~~~vP~~~~~l 221 (391)
T COG1453 167 PWDFV-QLQYNYIDQKNQAGTEGLKYAASKGL-GIFIMEPLDGGGLLYNVPEKLEEL 221 (391)
T ss_pred CcceE-EeeeeeeccchhcccHHHHHHHhCCC-cEEEEeeCCCCCcccCCCHHHHHH
Confidence 34444 55443333444444678888887775 44554 44 3444333444444
No 65
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.40 E-value=1.9e+02 Score=30.23 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=61.8
Q ss_pred EEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCC-----
Q 012639 272 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGV----- 346 (459)
Q Consensus 272 ~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~----- 346 (459)
.|+||+=|=|... | +++.+.++.+.+.. +++.. .++. |-+|. .|. +++|++.++
T Consensus 144 nIVfmGmGEPl~N-------~-d~vl~ai~~l~~~~---~i~~r-~iti-ST~G~----~~~----i~rL~~~~v~~~La 202 (344)
T PRK14464 144 KVVFMGMGEPAHN-------L-DNVLEAIDLLGTEG---GIGHK-NLVF-STVGD----PRV----FERLPQQRVKPALA 202 (344)
T ss_pred EEEEeccCcccCC-------H-HHHHHHHHHhhchh---cCCCc-eEEE-ecccC----chH----HHHHHHhcCChHHH
Confidence 6899998777621 3 44555555554432 44322 2222 76652 343 333333222
Q ss_pred ---------ceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 012639 347 ---------KSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE---NWGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 347 ---------k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~---~~~rvp~LNd~p~fi~aLadlV~e 405 (459)
.+--++|+.=-- ++| ||-...++..++.|.. +|..++.+||++.-++.|++++..
T Consensus 203 iSLhA~~~e~R~~imP~~~~~-~l~---el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~ 269 (344)
T PRK14464 203 LSLHTTRAELRARLLPRAPRI-APE---ELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKG 269 (344)
T ss_pred HHhcCCChhHhheeCCccCCC-CHH---HHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 244667763111 233 3333344555555631 689999999999999999999874
No 66
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=48.62 E-value=3.7e+02 Score=28.81 Aligned_cols=141 Identities=19% Similarity=0.205 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCC
Q 012639 249 GYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVK 328 (459)
Q Consensus 249 ~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~ 328 (459)
.|++++.+.|+.....++....+.-|+.+-|+|... =+.++.+.++.+.+.. .+....+++.-...+
T Consensus 81 ~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l-------~~~~l~~ll~~i~~~~---~~~~~~eitie~np~--- 147 (455)
T TIGR00538 81 PYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYL-------SPEQISRLMKLIRENF---PFNADAEISIEIDPR--- 147 (455)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCC-------CHHHHHHHHHHHHHhC---CCCCCCeEEEEeccC---
Confidence 477777777765433232112355666666777432 1345555666665543 222223333333211
Q ss_pred CCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhH-----hHHHHHHHHHHHcCCe--eEEEc-CCCCCCHHHHHHHH
Q 012639 329 WLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIE--NWGRV-PALNCTPSFITDLA 400 (459)
Q Consensus 329 WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EidiE~ke~a~e~G~~--~~~rv-p~LNd~p~fi~aLa 400 (459)
--+++.|+.|++.|+.+|-+=.=+|-.+.++.+. +...+.-+.+.++|++ ++..+ -.++++..-+....
T Consensus 148 ---~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl 224 (455)
T TIGR00538 148 ---YITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTL 224 (455)
T ss_pred ---cCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHH
Confidence 1256778888888887766633344444443331 1123444666677875 33333 33566665444444
Q ss_pred HHHHH
Q 012639 401 DAVIE 405 (459)
Q Consensus 401 dlV~e 405 (459)
+.+.+
T Consensus 225 ~~~~~ 229 (455)
T TIGR00538 225 EKVAE 229 (455)
T ss_pred HHHHh
Confidence 44444
No 67
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=48.59 E-value=4.6 Score=38.32 Aligned_cols=58 Identities=28% Similarity=0.562 Sum_probs=45.4
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHH
Q 012639 238 VSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECI 300 (459)
Q Consensus 238 ~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~ 300 (459)
+..+.+|.+++.+++.++..++++|..| +.+.=++-..|+|..-+ ..|||..++.+.+
T Consensus 38 ~~L~~rY~~~~~Lv~~m~~LarEEL~HF---eqV~~im~~Rgi~l~~~--~~~~Ya~~L~k~v 95 (180)
T cd07910 38 MSLIFRYPEKPELVEAMSDLAREELQHF---EQVLKIMKKRGIPLGPD--SKDPYASGLRKLV 95 (180)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCC--CCCHHHHHHHHHc
Confidence 5667889999999999999999999877 33445567889988765 3689976665543
No 68
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=46.77 E-value=3.8e+02 Score=28.65 Aligned_cols=141 Identities=20% Similarity=0.261 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccC
Q 012639 247 REGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGP 326 (459)
Q Consensus 247 ~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~ 326 (459)
...|++++.+.|+...........+.-||-++|+|.-. =+.+++.....|.+.+. ......+++.=.
T Consensus 64 ~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL-------~~~~l~~ll~~l~~~~~--~~~~~~EitiE~---- 130 (416)
T COG0635 64 VDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLL-------SPEQLERLLKALRELFN--DLDPDAEITIEA---- 130 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccC-------CHHHHHHHHHHHHHhcc--cCCCCceEEEEe----
Confidence 34588888888877766554333588899999999543 24566677667766651 122224444322
Q ss_pred CCCCCCc--HHHHHHHhhhcCCceEEEEcccccccchhhhHhHHH-----HHHHHHHHcCCeeE--EEcC-CCC-CCHHH
Q 012639 327 VKWLKPY--TDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDM-----EYKELALESGIENW--GRVP-ALN-CTPSF 395 (459)
Q Consensus 327 ~~WL~P~--t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~Eidi-----E~ke~a~e~G~~~~--~rvp-~LN-d~p~f 395 (459)
-|. ..+.++.+++.|+.||=+=-=+|=.+-+-++..+.. +.-+.+.+.|+.++ ..+= -++ ..+.|
T Consensus 131 ----nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~ 206 (416)
T COG0635 131 ----NPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESL 206 (416)
T ss_pred ----CCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHH
Confidence 354 567788888888888877666666666655543332 33455566676632 2221 122 33455
Q ss_pred HHHHHHHHH
Q 012639 396 ITDLADAVI 404 (459)
Q Consensus 396 i~aLadlV~ 404 (459)
.+.|..++.
T Consensus 207 ~~~l~~a~~ 215 (416)
T COG0635 207 KEDLEQALE 215 (416)
T ss_pred HHHHHHHHh
Confidence 555555443
No 69
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=46.17 E-value=4.1e+02 Score=28.55 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 012639 248 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 327 (459)
Q Consensus 248 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~ 327 (459)
..|++++.+.|+.....++....+.-|+-+=|+|.-. -+.++++.++.+.+.. ++....+++.-...+
T Consensus 81 ~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l-------~~~~l~~ll~~i~~~~---~~~~~~e~tie~~p~-- 148 (453)
T PRK13347 81 EAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTIL-------NPDQFERLMAALRDAF---DFAPEAEIAVEIDPR-- 148 (453)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccC-------CHHHHHHHHHHHHHhC---CCCCCceEEEEeccc--
Confidence 3477777777765444332212344455555665321 1456666666666654 332233443333211
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHh-----HHHHHHHHHHHcCCe--eEEE-cCCCCCCHHHHHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEE-----IDMEYKELALESGIE--NWGR-VPALNCTPSFITDL 399 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E-----idiE~ke~a~e~G~~--~~~r-vp~LNd~p~fi~aL 399 (459)
--+++.|+.|++.|+.+|-+=.=+|-.+.++.+.. --.+.-+.+.+.|+. ++.. .-.++.+..=+...
T Consensus 149 ----~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~t 224 (453)
T PRK13347 149 ----TVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRET 224 (453)
T ss_pred ----cCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHH
Confidence 12567788888878776665444444333333311 112334566677775 2222 23355555433333
Q ss_pred HHHH
Q 012639 400 ADAV 403 (459)
Q Consensus 400 adlV 403 (459)
.+.+
T Consensus 225 l~~~ 228 (453)
T PRK13347 225 LDKV 228 (453)
T ss_pred HHHH
Confidence 3333
No 70
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.03 E-value=3.1e+02 Score=27.07 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=72.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEe
Q 012639 242 RSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQ 321 (459)
Q Consensus 242 ~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQ 321 (459)
+++|-+|.....+++.|.++|.+.. |+.. ...+++...|..++.+.-+.+.+.+.. ..+..-+++.
T Consensus 112 PH~Wldp~~~~~~a~~I~~~L~~~d-P~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~~~~--~~~~~~v~~H 177 (266)
T cd01018 112 PHIWLSPANAKIMAENIYEALAELD-PQNA-----------TYYQANLDALLAELDALDSEIRTILSK--LKQRAFMVYH 177 (266)
T ss_pred CccCcCHHHHHHHHHHHHHHHHHhC-cccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEC
Confidence 4678899999999999999987653 2210 112234556777777777777666632 2211112221
Q ss_pred cCc---------------cCCCCCCC---cHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeE
Q 012639 322 SRV---------------GPVKWLKP---YTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENW 383 (459)
Q Consensus 322 Sr~---------------G~~~WL~P---~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~ 383 (459)
..+ ++. .+| ++.+.++.+.+.|++-| ++-..+-..-+ +.++++.|+. +
T Consensus 178 ~af~Y~~~~ygl~~~~~~~~~--~eps~~~l~~l~~~ik~~~v~~i-f~e~~~~~~~~----------~~la~~~g~~-v 243 (266)
T cd01018 178 PAWGYFARDYGLTQIPIEEEG--KEPSPADLKRLIDLAKEKGVRVV-FVQPQFSTKSA----------EAIAREIGAK-V 243 (266)
T ss_pred chhHHHHHHcCCEEEecCCCC--CCCCHHHHHHHHHHHHHcCCCEE-EEcCCCCcHHH----------HHHHHHcCCe-E
Confidence 111 111 245 34455566666777644 44344444433 3556788885 5
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q 012639 384 GRVPALNCTPSFITDLADAV 403 (459)
Q Consensus 384 ~rvp~LNd~p~fi~aLadlV 403 (459)
..+..++ ..+++.+...+
T Consensus 244 ~~ld~~~--~~y~~~m~~n~ 261 (266)
T cd01018 244 VTIDPLA--ADWEENLLKVA 261 (266)
T ss_pred EEeCCcH--HHHHHHHHHHH
Confidence 5666565 34666655544
No 71
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=45.87 E-value=81 Score=36.24 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=70.2
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHhhcCCCCee-eCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHH
Q 012639 81 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDII-RLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 159 (459)
Q Consensus 81 ~~k~aVLLlnlG~P~s~~dV~~fL~~~l~D~~Vi-~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~q 159 (459)
+++.-|+|.++|++. -+-=..|..+||.+..+- ..+..+ .....++.-.+ .+....|+ -|-+...+.++
T Consensus 580 g~rpkV~LatlG~d~-H~~ra~fv~~~l~~~GfeV~~~~~~----~s~e~~v~aa~----~~~a~ivv-lcs~d~~~~e~ 649 (714)
T PRK09426 580 GRRPRILVAKMGQDG-HDRGAKVIATAFADLGFDVDIGPLF----QTPEEAARQAV----ENDVHVVG-VSSLAAGHKTL 649 (714)
T ss_pred CCCceEEEEecCCcc-hhHhHHHHHHHHHhCCeeEecCCCC----CCHHHHHHHHH----HcCCCEEE-EeccchhhHHH
Confidence 344579999999974 444457999999988542 233211 12233333322 12233333 36677777778
Q ss_pred HHHHHHHHHhcCC-CceEEeeeeccCCCHHHHHHHHHHCCCCEEE
Q 012639 160 AQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 203 (459)
Q Consensus 160 a~~L~~~L~~~~~-~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIv 203 (459)
+..+.+.|++.|. ++.|.+| +.|.-++ .+.+++.|++.++
T Consensus 650 ~~~l~~~Lk~~G~~~v~vl~G---G~~~~~~-~~~l~~aGvD~~i 690 (714)
T PRK09426 650 VPALIEALKKLGREDIMVVVG---GVIPPQD-YDFLYEAGVAAIF 690 (714)
T ss_pred HHHHHHHHHhcCCCCcEEEEe---CCCChhh-HHHHHhCCCCEEE
Confidence 9999999998875 4778888 7754333 3788899999765
No 72
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=45.45 E-value=24 Score=34.26 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCC
Q 012639 147 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 209 (459)
Q Consensus 147 gggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyP 209 (459)
|-||-++.+|++--..|- +| ++.|.|+..+++|++.|++.|+++.=|.
T Consensus 9 G~gsR~~plT~~tpK~Ll----------kV-----~g~plIErqI~~L~e~gI~dI~IVvGYl 56 (231)
T COG4750 9 GLGSRFVPLTQSTPKSLL----------KV-----NGEPLIERQIEQLREAGIDDITIVVGYL 56 (231)
T ss_pred ccccccccccccCChHHH----------Hh-----cCcccHHHHHHHHHHCCCceEEEEeeeh
Confidence 556766666655443332 12 4899999999999999999999998874
No 73
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=44.95 E-value=1.2e+02 Score=29.45 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHcCCee---EEEcCCCCCCHHHHHHHHHHHHH
Q 012639 371 YKELALESGIEN---WGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 371 ~ke~a~e~G~~~---~~rvp~LNd~p~fi~aLadlV~e 405 (459)
.-+.+.+.|... ...+|.+||++.-++.+++.+.+
T Consensus 119 nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 119 NLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred HHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334455777653 44588999999999999999976
No 74
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=44.82 E-value=3.8e+02 Score=27.81 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 012639 248 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 327 (459)
Q Consensus 248 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~ 327 (459)
..|++++.+.|+. +...+. ..+.-|+.+-|.|.- ....++.+.++.+.+.+ ++....+++..++.+
T Consensus 31 ~~y~~~l~~Ei~~-~~~~~~-~~i~~i~~gGGtpt~-------l~~~~l~~ll~~i~~~~---~~~~~~eit~e~~p~-- 96 (377)
T PRK08599 31 DEYLDALIKEMNT-YAIRPF-DKLKTIYIGGGTPTA-------LSAEQLERLLTAIHRNL---PLSGLEEFTFEANPG-- 96 (377)
T ss_pred HHHHHHHHHHHHH-hhhcCC-CceeEEEeCCCCccc-------CCHHHHHHHHHHHHHhC---CCCCCCEEEEEeCCC--
Confidence 4577777777743 333221 123334445566532 12456666666666654 332223444444322
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhH-----hHHHHHHHHHHHcCCee--EE-EcCCCCCCHHHHHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIEN--WG-RVPALNCTPSFITDL 399 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EidiE~ke~a~e~G~~~--~~-rvp~LNd~p~fi~aL 399 (459)
--+++.++.|++.|+.+|-+=.=+|-.+.++.+. +--.+..+.+.+.|+.+ +. .+-.++.+..=+...
T Consensus 97 ----~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~ 172 (377)
T PRK08599 97 ----DLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKES 172 (377)
T ss_pred ----CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHH
Confidence 1246777777777877665544444444443332 11223345566777642 22 234456666544444
Q ss_pred HHHHHH
Q 012639 400 ADAVIE 405 (459)
Q Consensus 400 adlV~e 405 (459)
.+.+.+
T Consensus 173 l~~~~~ 178 (377)
T PRK08599 173 LAKALA 178 (377)
T ss_pred HHHHHc
Confidence 444433
No 75
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=43.93 E-value=2.7e+02 Score=29.53 Aligned_cols=105 Identities=21% Similarity=0.348 Sum_probs=62.7
Q ss_pred CCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCC-cHHHHHHHhhhcCCceEEEEcccccccchhhhHhH
Q 012639 289 GDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKP-YTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEI 367 (459)
Q Consensus 289 GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P-~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~Ei 367 (459)
|||-.---++ ...|+++|. .++.--.+-|.||+- =.-| .+.+.|.++.++..+.|.++ -|+..=.||
T Consensus 167 GDPL~ls~~~-L~~ll~~L~--~IpHv~iiRi~TR~p---vv~P~RIt~~L~~~l~~~~~~v~~~------tH~NHp~Ei 234 (369)
T COG1509 167 GDPLSLSDKK-LEWLLKRLR--AIPHVKIIRIGTRLP---VVLPQRITDELCEILGKSRKPVWLV------THFNHPNEI 234 (369)
T ss_pred CCccccCHHH-HHHHHHHHh--cCCceeEEEeecccc---eechhhccHHHHHHHhccCceEEEE------cccCChhhc
Confidence 7776321122 234555553 333223466678752 1233 22355555555555677665 488888999
Q ss_pred HHHHHHHHH---HcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 012639 368 DMEYKELAL---ESGIE---NWGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 368 diE~ke~a~---e~G~~---~~~rvp~LNd~p~fi~aLadlV~e 405 (459)
+-|.++.++ .+|+. +-+.....||+|.....|.+....
T Consensus 235 t~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~ 278 (369)
T COG1509 235 TPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFD 278 (369)
T ss_pred CHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHHH
Confidence 999876554 57764 345778999999987777665554
No 76
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=43.09 E-value=1.5e+02 Score=33.62 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=31.5
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHH--HHHHHHHH
Q 012639 145 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR 196 (459)
Q Consensus 145 ~IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~--eaL~~L~~ 196 (459)
.++|.|||...-++||++|.+.|++.. .+. .-.=|+.|... ++.+-+.+
T Consensus 437 r~~Gd~pLt~~G~~qA~~l~~~l~~~~-~~~--~~~V~sSpl~Ra~~TA~~i~~ 487 (664)
T PTZ00322 437 RIGGNSRLTERGRAYSRALFEYFQKEI-STT--SFTVMSSCAKRCTETVHYFAE 487 (664)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHhcc-CCC--CcEEEcCCcHHHHHHHHHHHh
Confidence 356789999999999999999997531 110 11225677644 44444443
No 77
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.86 E-value=3.2e+02 Score=26.36 Aligned_cols=147 Identities=11% Similarity=0.134 Sum_probs=76.1
Q ss_pred HHHHHHHHHCCCCEEEEEecCCc--ccc----CChhhHHHHHHHHHHHhccCC-CCcEEEecCCC--CCHHHHHHHHHHH
Q 012639 188 EEAVQQIKRDRITRLVVLPLYPQ--FSI----STTGSSIRVLQNIFREDAYLS-RLPVSIIRSWY--QREGYVNSMADLI 258 (459)
Q Consensus 188 ~eaL~~L~~~Gv~rIvvlPLyPq--yS~----~Ttgs~~~~l~~~~~~~~~~~-~~~~~~i~~~~--~~p~yI~ala~~I 258 (459)
.+.++.+.+.|++.|.+. +... +.. .+....++.+.+.++.....+ .+.+....-+. .++.++..+++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 777888888888765443 3211 000 111113444444443322211 23344445666 8888888777776
Q ss_pred HHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHH
Q 012639 259 QKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVL 338 (459)
Q Consensus 259 ~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L 338 (459)
.+. + .+ .+-+ + +..|..++.++.+.++.+.+.. + +..+.|+..=. ++=.+..++
T Consensus 156 ~~~----g-~~--~i~l-----~----Dt~G~~~P~~v~~li~~l~~~~---~---~~~~~~H~Hn~----~gla~an~l 209 (265)
T cd03174 156 EEA----G-AD--EISL-----K----DTVGLATPEEVAELVKALREAL---P---DVPLGLHTHNT----LGLAVANSL 209 (265)
T ss_pred HHc----C-CC--EEEe-----c----hhcCCcCHHHHHHHHHHHHHhC---C---CCeEEEEeCCC----CChHHHHHH
Confidence 543 1 12 1211 1 1236778888888888888775 1 24455543211 122345555
Q ss_pred HHhhhcCCceEEE--Ecccccccchh
Q 012639 339 VELGQKGVKSLLA--IPVSFVSEHIE 362 (459)
Q Consensus 339 ~~L~~~G~k~VvV--vPigFvsDhlE 362 (459)
..+ +.|++.|-. .++|=-+.+.-
T Consensus 210 aA~-~aG~~~id~s~~G~G~~~Gn~~ 234 (265)
T cd03174 210 AAL-EAGADRVDGSVNGLGERAGNAA 234 (265)
T ss_pred HHH-HcCCCEEEeccccccccccCcc
Confidence 554 358777664 34444455553
No 78
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=42.58 E-value=68 Score=29.45 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=42.8
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEccccccc--chhhhHhHHHHHHHHHHHcCCeeEEEcCCCC
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSE--HIETLEEIDMEYKELALESGIENWGRVPALN 390 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsD--hlETL~EidiE~ke~a~e~G~~~~~rvp~LN 390 (459)
+|+.|.+.++|++|.++|++=|+|-==+=+.- ..+++.++-.....++++.|+....++++-+
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~ 92 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHK 92 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCS
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 35788999999999999975555544444443 3455677766777888889998666666554
No 79
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=41.78 E-value=2.9e+02 Score=25.66 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHH--HHHHHH-HCCCCEEEEEe
Q 012639 149 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEE--AVQQIK-RDRITRLVVLP 206 (459)
Q Consensus 149 gSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~e--aL~~L~-~~Gv~rIvvlP 206 (459)
.+||...-.+||+.+.+.|.....++... |+.|.... +.+.+. ..|.. +.+.+
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i----~sS~l~Ra~~TA~~~a~~~~~~-~~~~~ 81 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDAI----YSSPLKRAQQTAEPLAEELGLP-LEVDD 81 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCEE----EECchHHHHHHHHHHHHhcCCC-ceecC
Confidence 46999999999999999997532222221 67776543 333333 34554 44444
No 80
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.59 E-value=4.2e+02 Score=27.12 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=50.6
Q ss_pred eEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCee---EEEcCCCCCCH
Q 012639 317 TLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIEN---WGRVPALNCTP 393 (459)
Q Consensus 317 ~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~---~~rvp~LNd~p 393 (459)
.+.+-|+. +.-|-.=-+++.++.|.+.|. .+. +-+-+ .|.+-+.+-..++-+.+.++|+.. .+.+...|+++
T Consensus 170 ~iri~Tr~-~v~~p~rit~ell~~L~~~g~-~v~-i~l~~--~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~ 244 (321)
T TIGR03822 170 IVRFHTRV-PVADPARVTPALIAALKTSGK-TVY-VALHA--NHARELTAEARAACARLIDAGIPMVSQSVLLRGVNDDP 244 (321)
T ss_pred EEEEeCCC-cccChhhcCHHHHHHHHHcCC-cEE-EEecC--CChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCH
Confidence 35556654 222211135788888888883 443 22222 344444455555667777899864 45677888998
Q ss_pred HHHHHHHHHHHH
Q 012639 394 SFITDLADAVIE 405 (459)
Q Consensus 394 ~fi~aLadlV~e 405 (459)
.-++.|.+.+.+
T Consensus 245 ~~l~~l~~~l~~ 256 (321)
T TIGR03822 245 ETLAALMRAFVE 256 (321)
T ss_pred HHHHHHHHHHHh
Confidence 877777766655
No 81
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=40.19 E-value=48 Score=35.37 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=46.6
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 395 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~f 395 (459)
.|.+|+=.-.|+.+++.|++.|+..-.-+-.+-+=|+.+| .+.|+..+++|. .+..|++++-|+.+
T Consensus 6 rw~gp~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i-~~~k~~ie~~GL-~~~vvEs~pv~e~I 71 (394)
T TIGR00695 6 RWYGPNDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEI-RKRKEYIESAGL-HWSVVESVPVHEAI 71 (394)
T ss_pred eeeCCCCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHH-HHHHHHHHHcCC-eEEEEeCCCccHHH
Confidence 5888877778888888999999965332222333344444 345677788999 58899999988765
No 82
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.04 E-value=3.9e+02 Score=26.61 Aligned_cols=149 Identities=9% Similarity=0.003 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHCCCCEEEE-EecCCccccCChh----hHHHHHHHHHHHhccC-CCCcEEEecCCCCCHHHHHHHHHH
Q 012639 184 YPFTEEAVQQIKRDRITRLVV-LPLYPQFSISTTG----SSIRVLQNIFREDAYL-SRLPVSIIRSWYQREGYVNSMADL 257 (459)
Q Consensus 184 ~P~i~eaL~~L~~~Gv~rIvv-lPLyPqyS~~Ttg----s~~~~l~~~~~~~~~~-~~~~~~~i~~~~~~p~yI~ala~~ 257 (459)
.|..+ .++...+.|++.|.+ +|.-+.......+ .+.+.+.+.++..+.. -.+.+...+.|...+.++..+++.
T Consensus 71 r~~~~-di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMD-DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHH-HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 45444 456666789997655 4544433322223 3344444443332211 134566677888888888777766
Q ss_pred HHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHH
Q 012639 258 IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEV 337 (459)
Q Consensus 258 I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~ 337 (459)
+.+. + .+. +. ..+..|--+|.++.+.++.+.+.+ + .++.+-++--.| =.+..+
T Consensus 150 ~~~~----g-~~~--i~---------l~Dt~G~~~P~~v~~~~~~~~~~~---~--~~i~~H~Hn~~G------la~an~ 202 (262)
T cd07948 150 VDKL----G-VNR--VG---------IADTVGIATPRQVYELVRTLRGVV---S--CDIEFHGHNDTG------CAIANA 202 (262)
T ss_pred HHHc----C-CCE--EE---------ECCcCCCCCHHHHHHHHHHHHHhc---C--CeEEEEECCCCC------hHHHHH
Confidence 5442 1 121 11 122346678888888888887765 3 233333333333 235555
Q ss_pred HHHhhhcCCceEEEE--cccccccch
Q 012639 338 LVELGQKGVKSLLAI--PVSFVSEHI 361 (459)
Q Consensus 338 L~~L~~~G~k~VvVv--PigFvsDhl 361 (459)
+..+ +.|++.|-.- -+|=-+.|.
T Consensus 203 ~~a~-~aG~~~vd~s~~GlGeraGn~ 227 (262)
T cd07948 203 YAAL-EAGATHIDTTVLGIGERNGIT 227 (262)
T ss_pred HHHH-HhCCCEEEEeccccccccCCc
Confidence 6555 3587766544 334344555
No 83
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=39.71 E-value=1.1e+02 Score=26.69 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCceEEEEc-ccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCH--HHHHHHHHHHH
Q 012639 334 TDEVLVELGQKGVKSLLAIP-VSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTP--SFITDLADAVI 404 (459)
Q Consensus 334 t~d~L~~L~~~G~k~VvVvP-igFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p--~fi~aLadlV~ 404 (459)
+.+-+++|+++|+|.||-.- -+=-.+.- -..+.++.++++|+ .|..+|.-...+ .-++.+++.+.
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp-----~~~~~~~~a~~~Gl-~y~~iPv~~~~~~~~~v~~f~~~l~ 83 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQP-----SSAEEAAAAEALGL-QYVHIPVDGGAITEEDVEAFADALE 83 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T------HHCHHHHHHHCT--EEEE----TTT--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCC-----CHHHHHHHHHHcCC-eEEEeecCCCCCCHHHHHHHHHHHH
Confidence 45678899999999988653 22111111 11124677889999 499999876654 34444444443
No 84
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=38.99 E-value=1.1e+02 Score=31.97 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=57.4
Q ss_pred EEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHH
Q 012639 176 VYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMA 255 (459)
Q Consensus 176 V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala 255 (459)
|.+| -.|-|.--++.|.+.|+++|++...|= ..|....+.+.+.. +.-+.++-+..+.|.--+-=+
T Consensus 35 Vpfg---n~pmI~hqieal~nsGi~~I~la~~y~------s~sl~~~~~k~y~~-----~lgVei~~s~eteplgtaGpl 100 (371)
T KOG1322|consen 35 VPFG---NKPMILHQIEALINSGITKIVLATQYN------SESLNRHLSKAYGK-----ELGVEILASTETEPLGTAGPL 100 (371)
T ss_pred cccC---cchhhHHHHHHHHhCCCcEEEEEEecC------cHHHHHHHHHHhhh-----ccceEEEEEeccCCCcccchH
Confidence 5666 679999999999999999999999983 22344444444422 122555555556666666666
Q ss_pred HHHHHHHhhcCCCCceEEEEeeC
Q 012639 256 DLIQKELGKFQKPEEVMIFFSAH 278 (459)
Q Consensus 256 ~~I~~~l~~~~~~~~~~LLFSaH 278 (459)
+.+|+.|..+.+. -.++++.|
T Consensus 101 ~laR~~L~~~~~~--~ffVLnsD 121 (371)
T KOG1322|consen 101 ALARDFLWVFEDA--PFFVLNSD 121 (371)
T ss_pred HHHHHHhhhcCCC--cEEEecCC
Confidence 7788888766321 24555555
No 85
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.76 E-value=2.8e+02 Score=27.95 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe----eEEEcCCCCCCHHHHHHHHHHHHHH
Q 012639 331 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE----NWGRVPALNCTPSFITDLADAVIEA 406 (459)
Q Consensus 331 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~----~~~rvp~LNd~p~fi~aLadlV~e~ 406 (459)
-|+-.+.+++|.++|+|=|+.+-|.+-.+.-+..| ++.++..|+. ....+. =.+|++.+..-+.+.+.
T Consensus 73 FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y------~~~~~~~~~~~~~~~~~~~D--~tnp~a~~~w~~~~~~~ 144 (292)
T cd06595 73 FPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY------PEMAKALGVDPATEGPILFD--LTNPKFMDAYFDNVHRP 144 (292)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH------HHHHHhcCCCcccCCeEEec--CCCHHHHHHHHHHHHHH
Confidence 39999999999999998888776665334333333 2334444432 111222 24788888776666554
Q ss_pred c
Q 012639 407 L 407 (459)
Q Consensus 407 l 407 (459)
+
T Consensus 145 ~ 145 (292)
T cd06595 145 L 145 (292)
T ss_pred H
Confidence 4
No 86
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=35.64 E-value=1.3e+02 Score=27.41 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=24.3
Q ss_pred hhhcCCceEEEEcccccccchh---hhHhHHHHHHHHHHHcCCeeEEEcC
Q 012639 341 LGQKGVKSLLAIPVSFVSEHIE---TLEEIDMEYKELALESGIENWGRVP 387 (459)
Q Consensus 341 L~~~G~k~VvVvPigFvsDhlE---TL~EidiE~ke~a~e~G~~~~~rvp 387 (459)
+.+-|.++|++.|++=.|+.+. +=.++=.+..+..++.|++ ..|+|
T Consensus 67 a~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~e-V~raP 115 (138)
T PF08915_consen 67 AKKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGFE-VYRAP 115 (138)
T ss_dssp HHHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT-E-EEE--
T ss_pred HHhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCCe-EEEeC
Confidence 3445788999999998887653 2222222223444677885 66776
No 87
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=35.62 E-value=54 Score=33.67 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecC
Q 012639 162 ALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 208 (459)
Q Consensus 162 ~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLy 208 (459)
.+.+.+.+.|.++.|. |-.=.+|++++-++.+.+-+.++|++||==
T Consensus 107 g~~~lf~~~Gv~~vi~-ggqt~nPS~~dl~~Ai~~~~a~~VivLPNn 152 (313)
T PF13684_consen 107 GLAELFRSLGVDVVIS-GGQTMNPSTEDLLNAIEKVGADEVIVLPNN 152 (313)
T ss_pred cHHHHHHhCCCeEEEe-CCCCCCCCHHHHHHHHHhCCCCeEEEEeCC
Confidence 3455555555444333 333378999999999998899999999953
No 88
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.97 E-value=52 Score=28.54 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=26.6
Q ss_pred cHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe
Q 012639 333 YTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 381 (459)
Q Consensus 333 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~ 381 (459)
.+.+.++++.+.|++.|++.|= +.+.|..+.++++|+.
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g-----------~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG-----------AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT-----------S--HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHcCCCEEEEEcc-----------hHHHHHHHHHHHcCCE
Confidence 6788899999999999988885 3345677888888874
No 89
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.86 E-value=3.4e+02 Score=30.09 Aligned_cols=134 Identities=16% Similarity=0.307 Sum_probs=69.9
Q ss_pred HHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCC--------------CCCHHHHHH
Q 012639 188 EEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW--------------YQREGYVNS 253 (459)
Q Consensus 188 ~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~--------------~~~p~yI~a 253 (459)
.+.|++|.+-|.+ .|+|-| .|.+.+.+.+.+-+ ..+.-+++| ..+|.|++.
T Consensus 157 krIidrm~~lGmT--pvLPaF-------aG~VP~al~rlfPe------snf~rl~rWn~f~s~~~C~l~v~P~dplF~eI 221 (666)
T KOG2233|consen 157 KRIIDRMLELGMT--PVLPAF-------AGHVPDALERLFPE------SNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEI 221 (666)
T ss_pred HHHHHHHHHcCCC--ccchhh-------ccccHHHHHHhCch------hceeeccccCCCCcceeeeEEccCCcchHHHH
Confidence 4567788888887 455555 45555666554322 223333333 246778776
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCC-------CeeEEEecCccC
Q 012639 254 MADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINN-------DHTLAYQSRVGP 326 (459)
Q Consensus 254 la~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~-------~~~lafQSr~G~ 326 (459)
=..-|++..+.++. +.=++++--. --+.- -..-+.-+..|+.+|++.++. .+. .|..++++ |
T Consensus 222 gs~Flr~~~kefG~---~tniy~~DpF--NE~~P-p~sepey~~staaAiyesm~k--vdknaVWllQgWlF~~d~-F-- 290 (666)
T KOG2233|consen 222 GSTFLRHQIKEFGG---VTNIYSADPF--NEILP-PESEPEYVKSTAAAIYESMKK--VDKNAVWLLQGWLFTYDP-F-- 290 (666)
T ss_pred HHHHHHHHHHHhCC---cccccccCcc--cccCC-CCCChHHHHHHHHHHHHHHhc--cCcceEEeeecceeecCC-C--
Confidence 55556665665642 2233444311 10000 011245567899999998853 221 23344444 2
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEE
Q 012639 327 VKWLKPYTDEVLVELGQKGVKSLLAI 352 (459)
Q Consensus 327 ~~WL~P~t~d~L~~L~~~G~k~VvVv 352 (459)
|..|.++..|..... | +++|.
T Consensus 291 --W~~~~ikafL~avP~-G--rllVL 311 (666)
T KOG2233|consen 291 --WPPWQIKAFLSAVPR-G--RLLVL 311 (666)
T ss_pred --CChHHHHHHHhcCCc-C--cEEEE
Confidence 766666666655443 3 55553
No 90
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=34.42 E-value=4.2e+02 Score=27.88 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 012639 248 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 327 (459)
Q Consensus 248 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~ 327 (459)
..|++++.+.|+.....+.. ..+.-||-+-|+|.-. =++++.+....|.+.+ ++....+++.-+.-+.
T Consensus 52 ~~Y~~~l~~ei~~~~~~~~~-~~i~siy~GGGTPs~L-------~~~~L~~ll~~i~~~~---~~~~~~eit~E~~p~~- 119 (394)
T PRK08898 52 AAYLDALRADLEQALPLVWG-RQVHTVFIGGGTPSLL-------SAAGLDRLLSDVRALL---PLDPDAEITLEANPGT- 119 (394)
T ss_pred HHHHHHHHHHHHHHHHhccC-CceeEEEECCCCcCCC-------CHHHHHHHHHHHHHhC---CCCCCCeEEEEECCCC-
Confidence 45777777777654322211 2345667777777432 1345555555555554 2222233444332211
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccch
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHI 361 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhl 361 (459)
-+.+.|+.|.+.|+++|-+=-=+|-.+-+
T Consensus 120 -----~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 120 -----FEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred -----CCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 12355666666666655553333333333
No 91
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=34.28 E-value=86 Score=28.17 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=52.2
Q ss_pred CeeeCCchhhhhhhHHHHHHHhccChhhHHhhhccCCCCchHHHHHHHHHHHHHHHHhcCC-CceEEeeeeccCCC----
Q 012639 112 DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGMRYWYPF---- 186 (459)
Q Consensus 112 ~Vi~lP~~~~~~~~~L~~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~~~-~~~V~~amrY~~P~---- 186 (459)
.||++.. .-+...++..-+ .++=..|| -|-|+..|......+.+.|++.+. +++|.+| +.+.
T Consensus 29 eVidLG~-----~v~~e~~v~aa~----~~~adiVg-lS~L~t~~~~~~~~~~~~l~~~gl~~v~vivG---G~~~i~~~ 95 (128)
T cd02072 29 NVVNLGV-----LSPQEEFIDAAI----ETDADAIL-VSSLYGHGEIDCKGLREKCDEAGLKDILLYVG---GNLVVGKQ 95 (128)
T ss_pred EEEECCC-----CCCHHHHHHHHH----HcCCCEEE-EeccccCCHHHHHHHHHHHHHCCCCCCeEEEE---CCCCCChh
Confidence 7787762 223455554421 11122344 588888888888888889988774 7888888 4443
Q ss_pred -HHHHHHHHHHCCCCEEE
Q 012639 187 -TEEAVQQIKRDRITRLV 203 (459)
Q Consensus 187 -i~eaL~~L~~~Gv~rIv 203 (459)
.++..++|++.|++++.
T Consensus 96 d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 96 DFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred hhHHHHHHHHHcCCCEEE
Confidence 25566789999999763
No 92
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.56 E-value=4.9e+02 Score=25.83 Aligned_cols=209 Identities=15% Similarity=0.177 Sum_probs=102.3
Q ss_pred eEEEEEccCCCCCcCcHHHHHHhhc-CCCCeeeCCchhhhhhhHHH--HHHHhccChhhHHhhhccCCCCchHHHHHHHH
Q 012639 84 VGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRLPRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 160 (459)
Q Consensus 84 ~aVLLlnlG~P~s~~dV~~fL~~~l-~D~~Vi~lP~~~~~~~~~L~--~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa 160 (459)
-=|.-+..|-|+- +.-.+++..+- .+-++|.|.=+ +..|++ +.|.. ...+.+.+|--+... -+..
T Consensus 11 ~li~y~~aG~P~~-~~~~~~~~~l~~~Gad~iElGiP---fsDP~aDGpvIq~-------a~~~al~~G~~~~~~-~~~v 78 (256)
T TIGR00262 11 AFIPFVTAGDPTL-ETSLEIIKTLIEAGADALELGVP---FSDPLADGPTIQA-------ADLRALRAGMTPEKC-FELL 78 (256)
T ss_pred eEEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEECCC---CCCCCCcCHHHHH-------HHHHHHHcCCCHHHH-HHHH
Confidence 3455677788853 22223444432 34578876322 334554 44432 123334333222211 1223
Q ss_pred HHHHHHHHhcCCCceEEeeeeccCC----CHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCC
Q 012639 161 QALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRL 236 (459)
Q Consensus 161 ~~L~~~L~~~~~~~~V~~amrY~~P----~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~ 236 (459)
++++ +...+.++. .|-|.+| .+++-++++++.|++-+++--+ |. ....++.+.+++.. +
T Consensus 79 ~~ir----~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-p~-------ee~~~~~~~~~~~g----l 141 (256)
T TIGR00262 79 KKVR----QKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-PL-------EESGDLVEAAKKHG----V 141 (256)
T ss_pred HHHH----hcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-Ch-------HHHHHHHHHHHHCC----C
Confidence 3333 222345555 9999999 5567788899999997776555 31 12234444444432 2
Q ss_pred c-EEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCC
Q 012639 237 P-VSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINND 315 (459)
Q Consensus 237 ~-~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~ 315 (459)
. +-++.+= ..+.-++.+++. . +...++.|-.|.- .....+..++.+.++.+.+.. + .+
T Consensus 142 ~~i~lv~P~-T~~eri~~i~~~-------~---~gfiy~vs~~G~T-----G~~~~~~~~~~~~i~~lr~~~---~--~p 200 (256)
T TIGR00262 142 KPIFLVAPN-ADDERLKQIAEK-------S---QGFVYLVSRAGVT-----GARNRAASALNELVKRLKAYS---A--KP 200 (256)
T ss_pred cEEEEECCC-CCHHHHHHHHHh-------C---CCCEEEEECCCCC-----CCcccCChhHHHHHHHHHhhc---C--CC
Confidence 3 3344432 333344333322 1 2234555555542 111235555666666666543 2 23
Q ss_pred eeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEE
Q 012639 316 HTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 352 (459)
Q Consensus 316 ~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 352 (459)
+.+.| | =++.+.++++.+.|..-|+|=
T Consensus 201 i~vgf----G------I~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 201 VLVGF----G------ISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred EEEeC----C------CCCHHHHHHHHHcCCCEEEEC
Confidence 33322 2 344567777777777655543
No 93
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.50 E-value=4.5e+02 Score=25.45 Aligned_cols=154 Identities=11% Similarity=0.088 Sum_probs=73.5
Q ss_pred ccCCCHHHHHHHHHHCCCCEEEEEecCCc-cccCChhhHHHHHHHHHHHhccCCCCcEEEecC----C-----CCCHHHH
Q 012639 182 YWYPFTEEAVQQIKRDRITRLVVLPLYPQ-FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS----W-----YQREGYV 251 (459)
Q Consensus 182 Y~~P~i~eaL~~L~~~Gv~rIvvlPLyPq-yS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~----~-----~~~p~yI 251 (459)
|+.-.+++.++.+++.|++.|=+..-+|+ |....+....+++.+.+++. ++++..+.. | ...+...
T Consensus 10 ~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~----gl~v~s~~~~~~~~~~~~~~~~~~~r 85 (275)
T PRK09856 10 HQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTY----QMPIIGYTPETNGYPYNMMLGDEHMR 85 (275)
T ss_pred heeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHc----CCeEEEecCcccCcCccccCCCHHHH
Confidence 44546999999999999997776543332 11112222345565555543 234433321 1 1244444
Q ss_pred HHHHHHHHHHHh---hcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCC
Q 012639 252 NSMADLIQKELG---KFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVK 328 (459)
Q Consensus 252 ~ala~~I~~~l~---~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~ 328 (459)
++..+.+++.++ .++- +..+++.+|.- . ... .+...+...+..+.+.+.... ..+++++..-.....
T Consensus 86 ~~~~~~~~~~i~~a~~lGa--~~i~~~~~~~~--~-~~~-~~~~~~~~~~~l~~l~~~a~~----~gv~l~iE~~~~~~~ 155 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNA--GYTLISAAHAG--Y-LTP-PNVIWGRLAENLSELCEYAEN----IGMDLILEPLTPYES 155 (275)
T ss_pred HHHHHHHHHHHHHHHHhCC--CEEEEcCCCCC--C-CCC-HHHHHHHHHHHHHHHHHHHHH----cCCEEEEecCCCCcc
Confidence 444455544443 2322 23333333321 1 100 122233444455555555533 246788765321222
Q ss_pred CCCCcHHHHHHHhhhcCCceE
Q 012639 329 WLKPYTDEVLVELGQKGVKSL 349 (459)
Q Consensus 329 WL~P~t~d~L~~L~~~G~k~V 349 (459)
|.-++.++.++-+..-+..++
T Consensus 156 ~~~~t~~~~~~l~~~~~~~~v 176 (275)
T PRK09856 156 NVVCNANDVLHALALVPSPRL 176 (275)
T ss_pred cccCCHHHHHHHHHHcCCCcc
Confidence 455666666655555454444
No 94
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=32.98 E-value=5e+02 Score=25.76 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=59.6
Q ss_pred eccCCCHHH---HHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHH
Q 012639 181 RYWYPFTEE---AVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADL 257 (459)
Q Consensus 181 rY~~P~i~e---aL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~ 257 (459)
+=+.|++.+ +++++.++| ++|+++++- ..-+|++ +.+..+.+. .++.+++++++...-.+.-. ++..
T Consensus 58 ~TS~ps~~~~~~~~~~l~~~~-~~vi~i~iS----s~lSgty-~~a~~aa~~---~~~~~i~ViDS~~~s~~~g~-~v~~ 127 (275)
T TIGR00762 58 KTSQPSPGEFLELYEKLLEEG-DEVLSIHLS----SGLSGTY-QSARQAAEM---VDEAKVTVIDSKSASMGLGL-LVLE 127 (275)
T ss_pred CcCCCCHHHHHHHHHHHHhCC-CeEEEEEcC----CchhHHH-HHHHHHHhh---CCCCCEEEECChHHHHHHHH-HHHH
Confidence 346777766 455677788 799999985 2334444 333333333 23457999998755443322 1111
Q ss_pred -------------HHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHH
Q 012639 258 -------------IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 307 (459)
Q Consensus 258 -------------I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L 307 (459)
|.+.++.+ .+...++|+-..+ ++..++|- +-.++..+...|
T Consensus 128 a~~~~~~G~s~~eI~~~l~~~--~~~~~~~f~v~~L--~~L~~gGR-----is~~~~~~g~lL 181 (275)
T TIGR00762 128 AAKLAEEGKSLEEILAKLEEL--RERTKLYFVVDTL--EYLVKGGR-----ISKAAALIGSLL 181 (275)
T ss_pred HHHHHHcCCCHHHHHHHHHHH--HhhcEEEEEECcH--HHHHhcCC-----ccHHHHHHHHhh
Confidence 22222222 2345677877766 44434453 334677777777
No 95
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=32.83 E-value=2.3e+02 Score=29.92 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=40.9
Q ss_pred CeeEEEecC--ccC--CCCCCCcHHHHHHHhhhcCCceEEEEccccc-ccchh-hhHhHHHHHHHHHHHcCCe
Q 012639 315 DHTLAYQSR--VGP--VKWLKPYTDEVLVELGQKGVKSLLAIPVSFV-SEHIE-TLEEIDMEYKELALESGIE 381 (459)
Q Consensus 315 ~~~lafQSr--~G~--~~WL~P~t~d~L~~L~~~G~k~VvVvPigFv-sDhlE-TL~EidiE~ke~a~e~G~~ 381 (459)
-|+++||++ +|. .+| .+..+.++++++.|++.|-+...-++ -|.-+ .-.+.-.+.++..++.|++
T Consensus 13 ~w~~~~~~~~~~g~~~~~~--~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 13 LWTVGWVGRDPFGDATRTA--LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLK 83 (382)
T ss_pred eeccCCCCCCCCCCCCCCC--cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCe
Confidence 488899876 453 345 47889999999999998876521111 12211 0111123567888899996
No 96
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=32.69 E-value=2.6e+02 Score=25.45 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHh-cCCCceEE--eeeeccCCCHHHHHHHHH
Q 012639 159 QAQALKTALEA-KNLPVNVY--VGMRYWYPFTEEAVQQIK 195 (459)
Q Consensus 159 qa~~L~~~L~~-~~~~~~V~--~amrY~~P~i~eaL~~L~ 195 (459)
=|++|++.|++ .++++.|. -.|.+..|.+...+...-
T Consensus 4 aA~Al~eal~~~~~~~~~v~v~D~~~~~~p~~~~~~~~~Y 43 (169)
T PF06925_consen 4 AARALAEALERRRGPDAEVEVVDFLEEASPWLRRLIRKAY 43 (169)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEehHHhhChHHHHHHHHHH
Confidence 36778888876 45555544 688888898877776653
No 97
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=32.64 E-value=6.4e+02 Score=26.86 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=8.1
Q ss_pred cHHHHHHHhhhcCCce
Q 012639 333 YTDEVLVELGQKGVKS 348 (459)
Q Consensus 333 ~t~d~L~~L~~~G~k~ 348 (459)
.+.++++.+.+.|++.
T Consensus 178 ~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 178 DVHQALEWIRAAGFPI 193 (430)
T ss_pred HHHHHHHHHHHcCCCe
Confidence 3444555555555544
No 98
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.36 E-value=2.5e+02 Score=28.15 Aligned_cols=58 Identities=12% Similarity=0.014 Sum_probs=35.7
Q ss_pred HHHhcCCCceEEeeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCccccCChhhHHHHHHHHH
Q 012639 166 ALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 227 (459)
Q Consensus 166 ~L~~~~~~~~V~~amrY~~P~i~eaL~~L---~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~ 227 (459)
..+.....++|..|- +.++++++++.. .+.|++-++++| |.|...+....++.+.+..
T Consensus 66 ~~~~~~~~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 66 VAEEAKGKVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREII 126 (293)
T ss_pred HHHHhCCCCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHH
Confidence 333333345666654 568899998754 567999999998 6676655433334344333
No 99
>PLN02591 tryptophan synthase
Probab=32.19 E-value=4e+02 Score=26.55 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCchhhccccCCccHHHHHHHHH------HHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEE
Q 012639 279 GVPVSYVEKAGDPYRDQMEECIY------LIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 352 (459)
Q Consensus 279 GlP~~~v~~~GDpY~~q~~~t~~------~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVv 352 (459)
|+|.+..-..|..=+.-..+..+ .+.+.+++.--..+.-+.+-+..-+ +....+++-++++++.|++-|++.
T Consensus 36 GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~--i~~~G~~~F~~~~~~aGv~Gviip 113 (250)
T PLN02591 36 GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNP--ILKRGIDKFMATIKEAGVHGLVVP 113 (250)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccH--HHHhHHHHHHHHHHHcCCCEEEeC
Q ss_pred cccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHH
Q 012639 353 PVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADA 402 (459)
Q Consensus 353 PigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadl 402 (459)
..-+ |=..++++.++++|+ ....+=+++.++.-++.+++.
T Consensus 114 DLP~---------ee~~~~~~~~~~~gl-~~I~lv~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 114 DLPL---------EETEALRAEAAKNGI-ELVLLTTPTTPTERMKAIAEA 153 (250)
T ss_pred CCCH---------HHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHh
No 100
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=31.96 E-value=2.7e+02 Score=28.10 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHHHHHHCCCCEEEEEecC--Cc--------cccCChhhHHHHHHHHHHHhccCCCCcEEEecCC---CCCHHHHHH
Q 012639 187 TEEAVQQIKRDRITRLVVLPLY--PQ--------FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW---YQREGYVNS 253 (459)
Q Consensus 187 i~eaL~~L~~~Gv~rIvvlPLy--Pq--------yS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~---~~~p~yI~a 253 (459)
++..|+++.+.|+. +.++|++ |. ...++.......+.-..++...++++-+.....+ .....+.++
T Consensus 90 ~d~~i~~a~~~Gi~-~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~ 168 (289)
T PF13204_consen 90 LDRRIEKANELGIE-AALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDA 168 (289)
T ss_dssp HHHHHHHHHHTT-E-EEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHH
T ss_pred HHHHHHHHHHCCCe-EEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHH
Confidence 46778888888986 4577777 32 0223333333333334455555667778888888 678889999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeeCCCc
Q 012639 254 MADLIQKELGKFQKPEEVMIFFSAHGVP 281 (459)
Q Consensus 254 la~~I~~~l~~~~~~~~~~LLFSaHGlP 281 (459)
+++.|++.- +.. |.|.|.-+
T Consensus 169 ~~~~i~~~d-----p~~---L~T~H~~~ 188 (289)
T PF13204_consen 169 MARGIKEND-----PYQ---LITIHPCG 188 (289)
T ss_dssp HHHHHHHH-------SS----EEEEE-B
T ss_pred HHHHHHhhC-----CCC---cEEEeCCC
Confidence 998887642 222 78999654
No 101
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=31.96 E-value=4.1e+02 Score=27.69 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEcccc----------------
Q 012639 293 RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSF---------------- 356 (459)
Q Consensus 293 ~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPigF---------------- 356 (459)
.+++...++...+ + |. .+++++ |.+|=|..++.+.++.+++.|.+.|.+-.=|+
T Consensus 45 ~eei~~~~~~~~~-~---Gv-~kvRlT-----GGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 45 LEEIRRLVRAFAE-L---GV-EKVRLT-----GGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred HHHHHHHHHHHHH-c---Cc-ceEEEe-----CCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcE
Confidence 5677777776666 5 76 466663 77788889999999998887777777765554
Q ss_pred cccchhhhH-----hHH--------HHHHHHHHHcCCe----eEEEcCCCCCCHHHHHHHHHHHHH
Q 012639 357 VSEHIETLE-----EID--------MEYKELALESGIE----NWGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 357 vsDhlETL~-----Eid--------iE~ke~a~e~G~~----~~~rvp~LNd~p~fi~aLadlV~e 405 (459)
|..+++||. .|- ++.-+.|.+.|.. +.+.++.+|+++. ..|++..++
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei--~~l~e~~~~ 178 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEI--EDLLEFAKE 178 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHH--HHHHHHHhh
Confidence 223343332 222 2334677788886 7788888888873 345555544
No 102
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=31.87 E-value=43 Score=27.25 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHHCCCCEEEEEec
Q 012639 183 WYPFTEEAVQQIKRDRITRLVVLPL 207 (459)
Q Consensus 183 ~~P~i~eaL~~L~~~Gv~rIvvlPL 207 (459)
-.-.+.+.+++|++.|.+.|+++|+
T Consensus 48 ~~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 48 PEKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp ECCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3556889999999999999999997
No 103
>PRK06886 hypothetical protein; Validated
Probab=31.75 E-value=6e+02 Score=26.29 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=33.7
Q ss_pred ccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceEEEEccc
Q 012639 287 KAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVS 355 (459)
Q Consensus 287 ~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~VvVvPig 355 (459)
..+|+....++..++...+ . |+..++..+--..++.. -..+..+.++.+++.|+ +|+..|.+
T Consensus 184 e~~~~~~~~le~l~~~~~~-~---Gl~grV~~sH~~~L~~~--~~~~~~~~i~~La~agi-~Vv~~P~s 245 (329)
T PRK06886 184 QFNTPKEKETEQLCDKTIE-H---GMQGRVVAIHGISIGAH--SKEYRYRLYQKMREADM-MVIACPMA 245 (329)
T ss_pred CCCchhHHHHHHHHHHHHH-c---CCCCCEEEEEeccccCc--ChhhHHHHHHHHHHcCC-eEEECchh
Confidence 3456654444444443332 2 76544444333323321 23567778888888886 77777764
No 104
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=31.61 E-value=6.4e+02 Score=26.58 Aligned_cols=167 Identities=12% Similarity=0.144 Sum_probs=75.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhc-CCCceEEeeeeccCC--CHHHHHHHHHHCCCCEEEEEecC--Ccc-ccCChhhH
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAK-NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLY--PQF-SISTTGSS 219 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~-~~~~~V~~amrY~~P--~i~eaL~~L~~~Gv~rIvvlPLy--Pqy-S~~Ttgs~ 219 (459)
+|||.|..--.+...+.+. .+.+. ..+-..++.+. ++| ...+-++.|++.|++||-+=..- +.- ....-+..
T Consensus 68 ~GGGTPs~l~~~~l~~ll~-~i~~~~~~~~~~eitiE-~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~ 145 (390)
T PRK06582 68 FGGGTPSLMNPVIVEGIIN-KISNLAIIDNQTEITLE-TNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHD 145 (390)
T ss_pred ECCCccccCCHHHHHHHHH-HHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCC
Confidence 4999995443333333332 33221 11111122222 244 44789999999999998654432 110 00111111
Q ss_pred HHHHHHHHHHhc-cCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCce--EEEEeeCCCchhhccccCC---ccH
Q 012639 220 IRVLQNIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEV--MIFFSAHGVPVSYVEKAGD---PYR 293 (459)
Q Consensus 220 ~~~l~~~~~~~~-~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~--~LLFSaHGlP~~~v~~~GD---pY~ 293 (459)
.+++.++++..+ ...++.+.+|-..+.+. .+.|.+.++.+++ ++ ++.+ .-|-...|+|..-.-.+|. |-.
T Consensus 146 ~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt--~e~~~~~l~~~~~-l~-p~his~y~L~i~~gT~l~~~~~~g~~~~p~~ 221 (390)
T PRK06582 146 CMQAIKTIEAANTIFPRVSFDLIYARSGQT--LKDWQEELKQAMQ-LA-TSHISLYQLTIEKGTPFYKLFKEGNLILPHS 221 (390)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeecCCCCCC--HHHHHHHHHHHHh-cC-CCEEEEecCEEccCChHHHHHhcCCCCCCCh
Confidence 233333332211 13355667776555442 3345555555554 22 2321 1122233444422111231 223
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeEE
Q 012639 294 DQMEECIYLIMQRLKDRGINNDHTLA 319 (459)
Q Consensus 294 ~q~~~t~~~v~e~L~~~g~~~~~~la 319 (459)
.+..+..+.+.+.|...|+ .+|++.
T Consensus 222 ~~~~~~~~~~~~~L~~~Gy-~~yeis 246 (390)
T PRK06582 222 DAAAEMYEWTNHYLESKKY-FRYEIS 246 (390)
T ss_pred HHHHHHHHHHHHHHHHcCC-ceeece
Confidence 4555566666777766677 355543
No 105
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=31.38 E-value=4.1e+02 Score=24.29 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=50.0
Q ss_pred eccCCCH--HHHHHHHHHCCCCEEEEEecCCccc-----cCChhhHHHHHHHHHHHhccCCCCcEEEec--CCCCCHHHH
Q 012639 181 RYWYPFT--EEAVQQIKRDRITRLVVLPLYPQFS-----ISTTGSSIRVLQNIFREDAYLSRLPVSIIR--SWYQREGYV 251 (459)
Q Consensus 181 rY~~P~i--~eaL~~L~~~Gv~rIvvlPLyPqyS-----~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~--~~~~~p~yI 251 (459)
+|.+|-. ...+++..+. +++++++|-.-+.. ..|.+.=++.+.+++.+ .+.+.+..++ ....+|..-
T Consensus 7 ~F~P~H~GHl~li~~a~~~-~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~---~~~~~v~~~~~~d~~~~~~~w 82 (158)
T cd02167 7 KFAPLHTGHVYLIYKALSQ-VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD---QENIVVHTLNEPDIPEYPNGW 82 (158)
T ss_pred ccCCCCHHHHHHHHHHHHH-CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC---CCCEEEEeCCCCCCCCCchhH
Confidence 4444443 2345554444 69999999743332 23444444455555543 2334444433 333455567
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeeCC
Q 012639 252 NSMADLIQKELGKFQKPEEVMIFFSAHG 279 (459)
Q Consensus 252 ~ala~~I~~~l~~~~~~~~~~LLFSaHG 279 (459)
+.|+..|+..+.+... .+..++|++|-
T Consensus 83 ~~w~~~v~~~v~~~~~-~~~~~vf~~~~ 109 (158)
T cd02167 83 DIWSNRVKTLIAENTR-CRPDIVFTAEE 109 (158)
T ss_pred HHHHHHHHHHHhhhcC-CCCCEEEEccC
Confidence 7778888888764211 12346788873
No 106
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.27 E-value=4.9e+02 Score=25.97 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=44.3
Q ss_pred CCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHH
Q 012639 331 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADA 402 (459)
Q Consensus 331 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadl 402 (459)
.-.+++-++++++.|++-+++.-.. ++| ..++.+.++++|+..+ ..=+++..+.-++.+++.
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDLp--------~ee-~~~~~~~~~~~gl~~I-~lvap~t~~eri~~i~~~ 164 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDLP--------PEE-AEELRAAAKKHGLDLI-FLVAPTTTDERLKKIASH 164 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCCC--------HHH-HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHHh
Confidence 4577889999999999998885332 222 3467788889999754 434678888777776665
No 107
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.05 E-value=2e+02 Score=30.52 Aligned_cols=139 Identities=14% Similarity=0.201 Sum_probs=89.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCC-CCeeEEE
Q 012639 242 RSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHTLAY 320 (459)
Q Consensus 242 ~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~-~~~~laf 320 (459)
.....+..+...+..+++. .. .+ .++.-.||- +..|.+.++++++.+-.- |.. .++-++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-----s~-~k-~vlvFvHGf--------Nntf~dav~R~aqI~~d~----g~~~~pVvFSW 154 (377)
T COG4782 94 VILQAEASFQTWLGAHISF-----SS-AK-TVLVFVHGF--------NNTFEDAVYRTAQIVHDS----GNDGVPVVFSW 154 (377)
T ss_pred eecccchhhhHHHhhhccc-----cC-CC-eEEEEEccc--------CCchhHHHHHHHHHHhhc----CCCcceEEEEc
Confidence 3455566566666655432 11 22 355567875 445877777888777553 443 3566777
Q ss_pred ecCc---c------CCCCCCCcHHHHHHHhhhcC-CceEEEEccccccc-chhhhHhHHHHHHH-HHHHcCCeeEEEcCC
Q 012639 321 QSRV---G------PVKWLKPYTDEVLVELGQKG-VKSLLAIPVSFVSE-HIETLEEIDMEYKE-LALESGIENWGRVPA 388 (459)
Q Consensus 321 QSr~---G------~~~WL~P~t~d~L~~L~~~G-~k~VvVvPigFvsD-hlETL~EidiE~ke-~a~e~G~~~~~rvp~ 388 (459)
-|+. | ...|-.|.++..|..|++++ .++|.|+.=+.=+. -+|+|.-|.++..+ +-.+.+ +......
T Consensus 155 PS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~--nViLAaP 232 (377)
T COG4782 155 PSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIK--NVILAAP 232 (377)
T ss_pred CCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhh--heEeeCC
Confidence 6653 2 24699999999999999885 99999998766553 46778888888766 544433 4555555
Q ss_pred CCCCHHHHHHHHH
Q 012639 389 LNCTPSFITDLAD 401 (459)
Q Consensus 389 LNd~p~fi~aLad 401 (459)
=-|.+.|..-+..
T Consensus 233 DiD~DVF~~Q~~~ 245 (377)
T COG4782 233 DIDVDVFSSQIAA 245 (377)
T ss_pred CCChhhHHHHHHH
Confidence 5566666655444
No 108
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=30.54 E-value=7.4e+02 Score=26.96 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCCceE
Q 012639 311 GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSL 349 (459)
Q Consensus 311 g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~k~V 349 (459)
.+.+..-.+|=| -.|-+=.++...++|.+.|.+-+
T Consensus 334 ~l~gK~~~vFGS----ygw~g~a~~~~~~~l~~~g~~~~ 368 (479)
T PRK05452 334 RFRNKRASAFGS----HGWSGGAVDRLSTRLQDAGFEMS 368 (479)
T ss_pred CcCCCEEEEEEC----CCcCcHHHHHHHHHHHHCCCEEe
Confidence 344456666655 34855556666666777787653
No 109
>PRK12677 xylose isomerase; Provisional
Probab=30.44 E-value=1.5e+02 Score=31.40 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=41.4
Q ss_pred CeeEEEecC--ccCCCCCCCcHHHHHHHhhhcCCceEEEEc---ccccccchhhhHhHHHHHHHHHHHcCCe
Q 012639 315 DHTLAYQSR--VGPVKWLKPYTDEVLVELGQKGVKSLLAIP---VSFVSEHIETLEEIDMEYKELALESGIE 381 (459)
Q Consensus 315 ~~~lafQSr--~G~~~WL~P~t~d~L~~L~~~G~k~VvVvP---igFvsDhlETL~EidiE~ke~a~e~G~~ 381 (459)
-|+++||++ +|+..=-..+.++.++.+++.|++.|-+.. +-|-.+..|. ...-.+.++.+++.|++
T Consensus 12 ~w~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~-~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 12 LWTVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAER-DRIIKRFKKALDETGLV 82 (384)
T ss_pred EeeccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhh-HHHHHHHHHHHHHcCCe
Confidence 489999886 443210112689999999999999887753 2232232221 11234567888899996
No 110
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=30.15 E-value=2.2e+02 Score=29.23 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCee---EEEcCCCCCCHHHHHHHHHHHHH
Q 012639 335 DEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIEN---WGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 335 ~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~---~~rvp~LNd~p~fi~aLadlV~e 405 (459)
++.++.|++.|.+.++++- .||...++|-..+.-+.+.+.|+.. .+..+..||++.-+..|.+.+.+
T Consensus 193 ~el~~~L~~~~~~~~~~~h----~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~ 262 (321)
T TIGR03821 193 SGLCDLLANSRLQTVLVVH----INHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFD 262 (321)
T ss_pred HHHHHHHHhcCCcEEEEee----CCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHH
Confidence 4566667666654433221 2776556666666667778889863 34466778998877777776665
No 111
>TIGR03856 F420_MSMEG_2906 probable F420-dependent oxidoreductase, MSMEG_2906 family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=29.82 E-value=2.8e+02 Score=27.35 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=48.0
Q ss_pred eEEEEeeCCCc--hhhccccCCcc-----HHHHHHHHHHHHHHHhhcCCC-CCeeEEEecCccCCCCCCCcHHHHHHHhh
Q 012639 271 VMIFFSAHGVP--VSYVEKAGDPY-----RDQMEECIYLIMQRLKDRGIN-NDHTLAYQSRVGPVKWLKPYTDEVLVELG 342 (459)
Q Consensus 271 ~~LLFSaHGlP--~~~v~~~GDpY-----~~q~~~t~~~v~e~L~~~g~~-~~~~lafQSr~G~~~WL~P~t~d~L~~L~ 342 (459)
.-|.+.++|-+ .+..-+.+|.+ +.+..+..+.+.+...+.|-. ..++++++. |. .+.++.+.
T Consensus 151 ~PI~vgg~g~~~~l~~aar~aDg~~~~~~~~~~~~~~~~l~~~a~~~Grd~~~i~~~~~~---------~~-~~~~~~~~ 220 (249)
T TIGR03856 151 IPILIGGGGEKKTLPLVARHADIWHSFLDIETYRRKSQILDRHCADVGRDPATIERSVSW---------PG-LDSADAYV 220 (249)
T ss_pred CCEEEEcCCCchHHHHHHHHCCCccCCCCHHHHHHHHHHHHHHHHHcCCChhHeEEEecC---------CC-HHHHHHHH
Confidence 34667777754 23222234443 344555555555554444643 235665532 23 58889999
Q ss_pred hcCCceEEEEcccccccchhhhH
Q 012639 343 QKGVKSLLAIPVSFVSEHIETLE 365 (459)
Q Consensus 343 ~~G~k~VvVvPigFvsDhlETL~ 365 (459)
+.|+..+++-+.....| +++|+
T Consensus 221 ~~G~~~~~~~~~~~~~~-~~~~~ 242 (249)
T TIGR03856 221 AAGVTLFTVGIGGPDYD-LTAVE 242 (249)
T ss_pred HcCCcEEEEeCCCCcCC-hHHHH
Confidence 99999999966554433 55543
No 112
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=29.70 E-value=4e+02 Score=26.47 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCCceEEeeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCccccCChhhHHHHHHHHH
Q 012639 171 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 227 (459)
Q Consensus 171 ~~~~~V~~amrY~~P~i~eaL~~L---~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~ 227 (459)
+..++|..| -+..+++++++.. ++.|++-++++| |.|...|.....+.+.+..
T Consensus 68 ~~~~~vi~g--v~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 68 AGRVPVIAG--VGANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIA 123 (289)
T ss_dssp TTSSEEEEE--EESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHH
T ss_pred cCceEEEec--CcchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHH
Confidence 345667766 4667899998865 457999998887 5566666555555444444
No 113
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=29.69 E-value=1.9e+02 Score=29.11 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=38.4
Q ss_pred cHHHHH---HHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEE-cCCCCCCHHHHHHHHH
Q 012639 333 YTDEVL---VELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR-VPALNCTPSFITDLAD 401 (459)
Q Consensus 333 ~t~d~L---~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~r-vp~LNd~p~fi~aLad 401 (459)
+|.+++ +...+.|+..++++||.|..-.-|.+++ -++++++..++.-+.| .+..+-+|..+..|++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~---~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYA---HVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHH---HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 444444 4456678888888888876533333333 3567766655554444 3444556666666654
No 114
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=29.61 E-value=2.9e+02 Score=27.52 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=33.5
Q ss_pred cCCCHHHH---HHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHH
Q 012639 183 WYPFTEEA---VQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREG 249 (459)
Q Consensus 183 ~~P~i~ea---L~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~ 249 (459)
+.|++.+- ++++..+|+++|+++++-... +|++ +.+..+.+.. ++.+++++++...-.+
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~L----Sgty-~~a~~aa~~~---~~~~i~ViDS~~~s~g 122 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGL----SGTY-NSARLAAKML---PDIKIHVIDSKSVSAG 122 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-----THH-HHHHHHHHHH---TTTEEEEEE-SS-HHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcch----hhHH-HHHHHHHhhc---CcCEEEEEeCCCcchh
Confidence 67887764 556667999999999986433 3433 3333333332 4567999998766444
No 115
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.25 E-value=4.8e+02 Score=25.49 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=37.1
Q ss_pred cHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHH
Q 012639 333 YTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLAD 401 (459)
Q Consensus 333 ~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLad 401 (459)
..++.++++.+.|+..|++.-. ++|+.+|+ .+..+.++++|.+....+ .++.++.-++.+++
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dl-----p~e~~~~~-~~~~~~~~~~Gl~~~~~v-~p~T~~e~l~~~~~ 150 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDL-----LIDYPDDL-EKYVEIIKNKGLKPVFFT-SPKFPDLLIHRLSK 150 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCC-----CCCcHHHH-HHHHHHHHHcCCCEEEEE-CCCCCHHHHHHHHH
Confidence 5566788888889988877311 24544443 245667788888644333 34555555544444
No 116
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=28.56 E-value=2.9e+02 Score=27.22 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=33.4
Q ss_pred CCceEEeeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCccccCChhhHHHHHHHHH
Q 012639 172 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 227 (459)
Q Consensus 172 ~~~~V~~amrY~~P~i~eaL~~L---~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~ 227 (459)
..++|..|- +.++++++++.. .+.|++-++++| |.|...+....++.+.+..
T Consensus 65 ~~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia 119 (281)
T cd00408 65 GRVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVA 119 (281)
T ss_pred CCCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHH
Confidence 356666664 667888888854 456999999877 5566555444444444433
No 117
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.31 E-value=90 Score=35.82 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=65.0
Q ss_pred cEEE--ecCCCC-CHHHHHHHHHHHHHHHhhcCC--CC--ceEEEEeeCCCchhhc-ccc-C------------CccHHH
Q 012639 237 PVSI--IRSWYQ-REGYVNSMADLIQKELGKFQK--PE--EVMIFFSAHGVPVSYV-EKA-G------------DPYRDQ 295 (459)
Q Consensus 237 ~~~~--i~~~~~-~p~yI~ala~~I~~~l~~~~~--~~--~~~LLFSaHGlP~~~v-~~~-G------------DpY~~q 295 (459)
.+++ .++|.+ -|.|=..++.-|++....+.. .. +-..=.--||+|+.+. +++ | |-|..|
T Consensus 39 ~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~E 118 (1070)
T KOG0434|consen 39 KFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNE 118 (1070)
T ss_pred ceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHH
Confidence 3444 445554 467777888888876644321 00 1122245699998773 211 1 459999
Q ss_pred HHHHH-------HHHHHHHhh-cCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcC--CceEEEEcccccc
Q 012639 296 MEECI-------YLIMQRLKD-RGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKG--VKSLLAIPVSFVS 358 (459)
Q Consensus 296 ~~~t~-------~~v~e~L~~-~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G--~k~VvVvPigFvs 358 (459)
|...+ +...++|.. ..+.++|..-|-|.+. ++=-+.++|.++| ++.+=|+|++-.+
T Consensus 119 CR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FME-------SvWwvFkeL~~kglVYRG~kVMP~STac 184 (1070)
T KOG0434|consen 119 CRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFME-------SVWWVFKELHEKGLVYRGFKVMPYSTAC 184 (1070)
T ss_pred HHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHH-------HHHHHHHHHHhcCceecceeeecccccc
Confidence 98865 234555510 0133455554433221 1222789998887 4778899986554
No 118
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=28.30 E-value=1.2e+02 Score=32.23 Aligned_cols=50 Identities=34% Similarity=0.416 Sum_probs=39.2
Q ss_pred CcHHHHHHHhhhcCCceEEEE-cccccccchhhhHhHHHHHHHHHHHcCCe
Q 012639 332 PYTDEVLVELGQKGVKSLLAI-PVSFVSEHIETLEEIDMEYKELALESGIE 381 (459)
Q Consensus 332 P~t~d~L~~L~~~G~k~VvVv-PigFvsDhlETL~EidiE~ke~a~e~G~~ 381 (459)
|.|.|.|--..+-|+++++|+ -=.=..|.-|+|+=.++|.||+..+.|+.
T Consensus 156 PQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 156 PQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred cchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 899998877777799998874 22333466688888899999999998875
No 119
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=27.99 E-value=2.7e+02 Score=28.20 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=31.4
Q ss_pred CCCceEEeeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCccccCChhhHHHHHH
Q 012639 171 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQ 224 (459)
Q Consensus 171 ~~~~~V~~amrY~~P~i~eaL~~L---~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~ 224 (459)
...++|..|- +. ++.++++.. .+.|++-++++| |.|...+....++.+.
T Consensus 74 ~~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~ 125 (303)
T PRK03620 74 AGRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVE 125 (303)
T ss_pred CCCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHH
Confidence 3456777776 44 889998855 456999998877 5566555433333333
No 120
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.35 E-value=6.1e+02 Score=24.99 Aligned_cols=156 Identities=9% Similarity=0.043 Sum_probs=81.8
Q ss_pred eccCCCHHHHHHHHHHCCCCEEEEE-ecCCccc----cCChhhHHHHHHHHHHHhccCCCCcEEE--ecCCCCCHHHHHH
Q 012639 181 RYWYPFTEEAVQQIKRDRITRLVVL-PLYPQFS----ISTTGSSIRVLQNIFREDAYLSRLPVSI--IRSWYQREGYVNS 253 (459)
Q Consensus 181 rY~~P~i~eaL~~L~~~Gv~rIvvl-PLyPqyS----~~Ttgs~~~~l~~~~~~~~~~~~~~~~~--i~~~~~~p~yI~a 253 (459)
|.....++.+++.....|++.|-++ |+.+... ..|....++.+.+.++..+.. .+.+.+ .......+.|+..
T Consensus 69 r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~~~~~~~~~ 147 (268)
T cd07940 69 RAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSH-GLDVEFSAEDATRTDLDFLIE 147 (268)
T ss_pred cCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCeEEEeeecCCCCCHHHHHH
Confidence 4544444444443333338877665 5544332 122333445555544432222 233444 3444467888887
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCc
Q 012639 254 MADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPY 333 (459)
Q Consensus 254 la~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~ 333 (459)
+++.+.+. + .+. + ...+..|--++.++.+.++.+.+.+ +- .+..+.|+..=. ++=.
T Consensus 148 ~~~~~~~~----G-~~~--i---------~l~DT~G~~~P~~v~~lv~~l~~~~---~~-~~i~l~~H~Hn~----~GlA 203 (268)
T cd07940 148 VVEAAIEA----G-ATT--I---------NIPDTVGYLTPEEFGELIKKLKENV---PN-IKVPISVHCHND----LGLA 203 (268)
T ss_pred HHHHHHHc----C-CCE--E---------EECCCCCCCCHHHHHHHHHHHHHhC---CC-CceeEEEEecCC----cchH
Confidence 77776542 2 121 1 1122347778899999999998876 20 024555554321 1234
Q ss_pred HHHHHHHhhhcCCceEE--EEcccccccchh
Q 012639 334 TDEVLVELGQKGVKSLL--AIPVSFVSEHIE 362 (459)
Q Consensus 334 t~d~L~~L~~~G~k~Vv--VvPigFvsDhlE 362 (459)
+..++..+ +.|++.|. +.++|=-+.|.-
T Consensus 204 ~An~laAi-~aG~~~iD~s~~GlG~~aGN~~ 233 (268)
T cd07940 204 VANSLAAV-EAGARQVECTINGIGERAGNAA 233 (268)
T ss_pred HHHHHHHH-HhCCCEEEEEeecccccccccc
Confidence 55566655 35888776 456665566664
No 121
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.97 E-value=7.4e+02 Score=25.84 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHHH
Q 012639 370 EYKELALESGIE---NWGRVPALNCTPSFITDLADAVIEA 406 (459)
Q Consensus 370 E~ke~a~e~G~~---~~~rvp~LNd~p~fi~aLadlV~e~ 406 (459)
..++.+.+.|.+ +|..+|.+||++.-++.|++.+...
T Consensus 244 ~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l 283 (345)
T PRK14457 244 DCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGF 283 (345)
T ss_pred HHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcC
Confidence 345555566644 6888999999999999999999764
No 122
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=26.77 E-value=1.1e+02 Score=31.11 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=35.0
Q ss_pred CCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe
Q 012639 331 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 381 (459)
Q Consensus 331 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~ 381 (459)
.+.+.++++++.+.|+|.++|+.=|| -|+ ...+..+.++++|+.
T Consensus 73 a~~v~~~l~e~~~~Gvk~avIis~Gf----~e~---~~~~l~~~a~~~gir 116 (286)
T TIGR01019 73 APFAADAIFEAIDAGIELIVCITEGI----PVH---DMLKVKRYMEESGTR 116 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC----CHH---HHHHHHHHHHHcCCE
Confidence 36789999999999999999999888 233 234667888888874
No 123
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=26.70 E-value=3.5e+02 Score=27.79 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=29.3
Q ss_pred CcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCC
Q 012639 332 PYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNC 391 (459)
Q Consensus 332 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd 391 (459)
|.+...|++..++|+=+|-+-.+. ..+. ||+ +++.++.|.+....+|..++
T Consensus 44 ~~VsRlL~~Ar~~GiV~I~I~~~~--~~~~----~Le---~~L~~~fgLk~~iVvp~~~~ 94 (318)
T PRK15418 44 LKVSRLLEKGRQSGIIRVQINSRF--EGCL----ELE---NALRQHFSLQHIRVLPALAD 94 (318)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCC--ccHH----HHH---HHHHHHhCCCEEEEEeCCCc
Confidence 566667777777777777665441 2222 222 23344557777777776543
No 124
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=26.52 E-value=6.4e+02 Score=24.96 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=66.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEe
Q 012639 242 RSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQ 321 (459)
Q Consensus 242 ~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQ 321 (459)
+++|-+|.....+++.|.+.|.+.. |+.. ...+++...|..++.+.-+.+.+.+.. ..+..-++|.
T Consensus 113 PH~Wldp~~~~~~a~~Ia~~L~~~d-P~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~~~~--~~~~~~v~~H 178 (282)
T cd01017 113 PHVWLSPVLAIQQVENIKDALIKLD-PDNK-----------EYYEKNAAAYAKKLEALDQEYRAKLAK--AKGKTFVTQH 178 (282)
T ss_pred CccccCHHHHHHHHHHHHHHHHHhC-cccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCeEEEec
Confidence 3678899999999999999997653 2210 112234556777777777777666632 1111112221
Q ss_pred cC-------cc--------CCCCCCCcH---HHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeE
Q 012639 322 SR-------VG--------PVKWLKPYT---DEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENW 383 (459)
Q Consensus 322 Sr-------~G--------~~~WL~P~t---~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~ 383 (459)
-. +| ..+=.+|+. .+.++.+.+.|++ ++++-+.|-..-+|+ ++++.|+. +
T Consensus 179 ~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~if~e~~~~~~~~~~----------la~~~g~~-v 246 (282)
T cd01017 179 AAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVK-YIFFEENASSKIAET----------LAKETGAK-L 246 (282)
T ss_pred ccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCCChHHHHH----------HHHHcCCc-E
Confidence 11 11 101124544 3345556666775 444444555444433 56778885 4
Q ss_pred EEcCCCC
Q 012639 384 GRVPALN 390 (459)
Q Consensus 384 ~rvp~LN 390 (459)
..+..+.
T Consensus 247 ~~ld~l~ 253 (282)
T cd01017 247 LVLNPLE 253 (282)
T ss_pred EEecccc
Confidence 5666554
No 125
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.37 E-value=1.5e+02 Score=29.94 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCe---eEEEecCccCCCC---CCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHh
Q 012639 293 RDQMEECIYLIMQRLKDRGINNDH---TLAYQSRVGPVKW---LKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEE 366 (459)
Q Consensus 293 ~~q~~~t~~~v~e~L~~~g~~~~~---~lafQSr~G~~~W---L~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~E 366 (459)
.+++.++++.+ ++.|++-++ ...||...|.-.| .-|+..+.+++|.++|+|=++.+-|.+..|+- +
T Consensus 29 ~~~v~~~~~~~----~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~--~-- 100 (303)
T cd06592 29 QETVLNYAQEI----IDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSE--N-- 100 (303)
T ss_pred HHHHHHHHHHH----HHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCH--H--
Confidence 44555544444 434764332 2357776664333 34899999999999999988888776655542 2
Q ss_pred HHHHHHHHHHHcCCeeEEEc-----CC-----------C-CCCHHHHHHHHHHHHHHc
Q 012639 367 IDMEYKELALESGIENWGRV-----PA-----------L-NCTPSFITDLADAVIEAL 407 (459)
Q Consensus 367 idiE~ke~a~e~G~~~~~rv-----p~-----------L-Nd~p~fi~aLadlV~e~l 407 (459)
+++ +.+.|. +.+- |. + =.+|...+.+.+.+++.+
T Consensus 101 ----~~e-~~~~g~--~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 101 ----FRE-AVEKGY--LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred ----HHh-hhhCCe--EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 222 233332 2211 11 1 246888888888887766
No 126
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=26.07 E-value=7.7e+02 Score=25.72 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 012639 248 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 327 (459)
Q Consensus 248 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~ 327 (459)
..|++++.+.|+...+.++. ..+.-||-+-|+|.-. -.+++++..+.+.+.+ ++....+++.-.. |.
T Consensus 34 ~~Y~~aL~~Ei~~~~~~~~~-~~i~tiy~GGGTPs~l-------~~~~L~~ll~~i~~~f---~~~~~~eit~E~~--P~ 100 (380)
T PRK09057 34 ARFAAAFLRELATEAARTGP-RTLTSIFFGGGTPSLM-------QPETVAALLDAIARLW---PVADDIEITLEAN--PT 100 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCcCeEEeCCCccccC-------CHHHHHHHHHHHHHhC---CCCCCccEEEEEC--cC
Confidence 56999999998765444321 2345678888888532 2456777777777765 3333334554442 21
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhH-----hHHHHHHHHHHHcCCe-eEEEcCC-CCCCH-HHHHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLE-----EIDMEYKELALESGIE-NWGRVPA-LNCTP-SFITDL 399 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~-----EidiE~ke~a~e~G~~-~~~rvp~-LNd~p-~fi~aL 399 (459)
--+.+.|+.|.+.|+++|-+=-=+|-.+.+..+. +...+.-+.++++|.. ++..+-. ++.+. .|.+.+
T Consensus 101 ----~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l 176 (380)
T PRK09057 101 ----SVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAEL 176 (380)
T ss_pred ----cCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHH
Confidence 1234889999999999888755555555554442 2223334455555542 3444545 45554 577766
Q ss_pred HHHHH
Q 012639 400 ADAVI 404 (459)
Q Consensus 400 adlV~ 404 (459)
..++.
T Consensus 177 ~~~~~ 181 (380)
T PRK09057 177 KEALS 181 (380)
T ss_pred HHHHh
Confidence 66653
No 127
>PLN02417 dihydrodipicolinate synthase
Probab=26.03 E-value=3.6e+02 Score=26.95 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCccccCChhhHHHHHHH
Q 012639 159 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQN 225 (459)
Q Consensus 159 qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L---~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~ 225 (459)
+.+.++...+.....++|..| -+.+++.++++.. ++.|++-++++| |.|...+....++.+.+
T Consensus 56 r~~~~~~~~~~~~~~~pvi~g--v~~~~t~~~i~~a~~a~~~Gadav~~~~--P~y~~~~~~~i~~~f~~ 121 (280)
T PLN02417 56 HIMLIGHTVNCFGGKIKVIGN--TGSNSTREAIHATEQGFAVGMHAALHIN--PYYGKTSQEGLIKHFET 121 (280)
T ss_pred HHHHHHHHHHHhCCCCcEEEE--CCCccHHHHHHHHHHHHHcCCCEEEEcC--CccCCCCHHHHHHHHHH
Confidence 333344334433334555554 4678889998865 467999888877 55665554444443433
No 128
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.97 E-value=2.2e+02 Score=28.53 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCcHHHHHHH---hhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEE-cC---CCCCCHHHHHHHHH
Q 012639 331 KPYTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR-VP---ALNCTPSFITDLAD 401 (459)
Q Consensus 331 ~P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~r-vp---~LNd~p~fi~aLad 401 (459)
.++|+++++. ..+.|+..|+++||.|..-.-| +|-.-+++++...+..-+.| .| ..+-++.++..|++
T Consensus 82 ~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~---~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 82 SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFE---EICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHH---HHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 4677777654 4567999999999988764333 33333577777655554444 33 34456666666653
No 129
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=25.83 E-value=9e+02 Score=26.45 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhc-CCCceEEeeeeccCCC--HHHHHHHHHHCCCCEEEEEec------CCccccCCh
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAK-NLPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLVVLPL------YPQFSISTT 216 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~-~~~~~V~~amrY~~P~--i~eaL~~L~~~Gv~rIvvlPL------yPqyS~~Tt 216 (459)
+|||+|..--.+...+.+....... +......+-+.-+.|. .++.++.|++.|+++|-+=+. .-..-...+
T Consensus 224 fGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht 303 (488)
T PRK08207 224 FGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHT 303 (488)
T ss_pred EeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCC
Q ss_pred hhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCcc-HHH
Q 012639 217 GSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPY-RDQ 295 (459)
Q Consensus 217 gs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY-~~q 295 (459)
.....+..+.+++.+ .+.+.+.+|-..+.+. .+-+.+.++...+--++.=.+..+-...|+|+..-....... ..+
T Consensus 304 ~e~v~~ai~~ar~~G-f~~In~DLI~GLPgEt--~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~ 380 (488)
T PRK08207 304 VEDIIEKFHLAREMG-FDNINMDLIIGLPGEG--LEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREE 380 (488)
T ss_pred HHHHHHHHHHHHhCC-CCeEEEEEEeCCCCCC--HHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCe------------eEEEecCcc
Q 012639 296 MEECIYLIMQRLKDRGINNDH------------TLAYQSRVG 325 (459)
Q Consensus 296 ~~~t~~~v~e~L~~~g~~~~~------------~lafQSr~G 325 (459)
..+..+...+.|...|+ .+| +.+=-++-|
T Consensus 381 ~~~m~~~a~~~l~~~Gy-~~Yylyrqk~~~~n~E~~~ya~~g 421 (488)
T PRK08207 381 IEKMMEEAEEWAKELGY-VPYYLYRQKNMLGNLENVGYAKPG 421 (488)
T ss_pred HHHHHHHHHHHHHHcCC-HhhhhhhccccccccceecccCCC
No 130
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=25.74 E-value=80 Score=33.05 Aligned_cols=67 Identities=22% Similarity=0.412 Sum_probs=50.6
Q ss_pred CCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHH
Q 012639 328 KWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFI 396 (459)
Q Consensus 328 ~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi 396 (459)
.|.+|+-.-.|+...+.|++.|+-....--++-.=..+|| .+.|+..++.|. .+..+++.+-|..+.
T Consensus 6 rw~g~~D~v~l~~irQ~Gv~gIV~aLh~iP~g~~W~~~~I-~~~k~~ie~~Gl-~~~vvESvPvhedIK 72 (362)
T COG1312 6 RWYGPNDPVTLEDIRQAGVKGVVTALHHIPAGEVWPVEEI-LKRKEEIESAGL-TWSVVESVPVHEDIK 72 (362)
T ss_pred EEecCCCCccHHHHHHhCccceeccCCCCCCCCcCcHHHH-HHHHHHHHHcCc-eEEeecCCCHHHHHH
Confidence 4788855556778888899999988877777666556665 345777788998 599999998887643
No 131
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=25.67 E-value=2.4e+02 Score=27.40 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=13.0
Q ss_pred HHHHHHHHHHCCCCEEEEEecC
Q 012639 187 TEEAVQQIKRDRITRLVVLPLY 208 (459)
Q Consensus 187 i~eaL~~L~~~Gv~rIvvlPLy 208 (459)
+.|.++.|.+.|+++||++--+
T Consensus 88 l~di~~sl~~~Gf~~ivivngH 109 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGH 109 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESS
T ss_pred HHHHHHHHHHcCCCEEEEEECC
Confidence 4556666666777777777654
No 132
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=25.58 E-value=2.2e+02 Score=30.12 Aligned_cols=65 Identities=29% Similarity=0.381 Sum_probs=45.2
Q ss_pred hhHHhhhccCCCCchHHHHHHHHHHHHHHHHhcCCCceEEeeeeccCC----CHHHHHHHH---HHCCCCEEEEEecCCc
Q 012639 138 KSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQI---KRDRITRLVVLPLYPQ 210 (459)
Q Consensus 138 k~~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~~~~~~V~~amrY~~P----~i~eaL~~L---~~~Gv~rIvvlPLyPq 210 (459)
.+.+.|..||--.||.+ |+.|++.|. .+.++|+=|.=..| -+..|+.|. +.+|+++++-=.=.-|
T Consensus 67 Ev~e~Y~~~gRPTPL~R-----A~~LE~~L~---tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQ 138 (432)
T COG1350 67 EVREAYLQIGRPTPLIR-----AKNLEEALG---TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQ 138 (432)
T ss_pred HHHHHHHHhCCCCchhh-----hhhHHHHhC---CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCch
Confidence 45689999998899986 566777774 46788887743333 366677764 5689999875544444
No 133
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=25.19 E-value=6.6e+02 Score=24.63 Aligned_cols=120 Identities=12% Similarity=0.232 Sum_probs=67.5
Q ss_pred HHHHHHCCCCEEEEEecCCcccc----CChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcC
Q 012639 191 VQQIKRDRITRLVVLPLYPQFSI----STTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQ 266 (459)
Q Consensus 191 L~~L~~~Gv~rIvvlPLyPqyS~----~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~ 266 (459)
+-.+.++ .+=+.++.++|+... .+.+. +.+....+.. ++++..+..-.....+.+.+.+.+++. +
T Consensus 17 l~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~--~~~~~qA~al----gipl~~~~~~~~~e~~~e~l~~~l~~~----g 85 (223)
T TIGR00290 17 LYHALKE-HEVISLVNIMPENEESYMFHGVNA--HLTDLQAESI----GIPLIKLYTEGTEEDEVEELKGILHTL----D 85 (223)
T ss_pred HHHHHHh-CeeEEEEEEecCCCCcccccccCH--HHHHHHHHHc----CCCeEEeecCCCccHHHHHHHHHHHHc----C
Confidence 3344445 666677778887431 12222 2222222221 345544444455677887777766543 1
Q ss_pred CCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhcCC
Q 012639 267 KPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGV 346 (459)
Q Consensus 267 ~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~G~ 346 (459)
-+ +++ .||-+-.....-.+.+++++ |+. +- -|. |-.+ .++.++++.+.|+
T Consensus 86 -v~--~vv-------------~GdI~s~~qr~~~e~v~~~l---gl~--------~~-~PL-W~~~-~~~ll~e~i~~G~ 135 (223)
T TIGR00290 86 -VE--AVV-------------FGAIYSEYQKTRIERVCREL---GLK--------SF-APL-WHRD-PEKLMEEFVEEKF 135 (223)
T ss_pred -CC--EEE-------------ECCcccHHHHHHHHHHHHhc---CCE--------Ee-ccc-cCCC-HHHHHHHHHHcCC
Confidence 11 222 27777555566667788887 762 21 122 7555 4569999999999
Q ss_pred ceEEE
Q 012639 347 KSLLA 351 (459)
Q Consensus 347 k~VvV 351 (459)
+-+++
T Consensus 136 ~aiIv 140 (223)
T TIGR00290 136 EARII 140 (223)
T ss_pred eEEEE
Confidence 88774
No 134
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.08 E-value=6.9e+02 Score=24.88 Aligned_cols=105 Identities=22% Similarity=0.308 Sum_probs=56.2
Q ss_pred EEEEEccCCCCCcCcHHHHHHhhc-CCCCeeeCCchhhhhhhHHH--HHHHhccChhhHHhhhccCCCCchHHHHHHHHH
Q 012639 85 GVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRLPRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQ 161 (459)
Q Consensus 85 aVLLlnlG~P~s~~dV~~fL~~~l-~D~~Vi~lP~~~~~~~~~L~--~~I~~~R~~k~~~~Y~~IgggSPL~~~T~~qa~ 161 (459)
=|.-+..|-|+--. -.+++..+- .+-++|.|.-+ +..|++ +.|.. ...+.+.+|--+.. .-++.+
T Consensus 14 li~yi~aG~P~~~~-~~~~~~~l~~~Gad~iElGiP---fSDP~aDGpvIq~-------a~~~AL~~G~~~~~-~~~~~~ 81 (258)
T PRK13111 14 LIPYITAGDPDLET-SLEIIKALVEAGADIIELGIP---FSDPVADGPVIQA-------ASLRALAAGVTLAD-VFELVR 81 (258)
T ss_pred EEEEEeCCCCCHHH-HHHHHHHHHHCCCCEEEECCC---CCCCcccCHHHHH-------HHHHHHHcCCCHHH-HHHHHH
Confidence 45566777776322 222333332 34578876322 334554 44432 23444533322222 222333
Q ss_pred HHHHHHHhcCCCceEEeeeeccCC----CHHHHHHHHHHCCCCEEEEEe
Q 012639 162 ALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLP 206 (459)
Q Consensus 162 ~L~~~L~~~~~~~~V~~amrY~~P----~i~eaL~~L~~~Gv~rIvvlP 206 (459)
+++ +...+.++ +-|.|++| .+++-++++++.|++-+++--
T Consensus 82 ~~r----~~~~~~p~-vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipD 125 (258)
T PRK13111 82 EIR----EKDPTIPI-VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPD 125 (258)
T ss_pred HHH----hcCCCCCE-EEEecccHHhhcCHHHHHHHHHHcCCcEEEECC
Confidence 333 22234555 48999999 566778899999999888743
No 135
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=25.06 E-value=4.5e+02 Score=23.09 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.2
Q ss_pred eccCCCHHHHHHHHHHCCCCEEEEEecCCcccc
Q 012639 181 RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 213 (459)
Q Consensus 181 rY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~ 213 (459)
....|.+...+.-+...|+..++++=|||+++.
T Consensus 28 ~~~D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t 60 (136)
T PF07799_consen 28 EKDDPTIRRCINFARRWGYGGVIIVNLFPQRST 60 (136)
T ss_pred cCCCHHHHHHHHHHhhcCCCeEEEEEecccccC
Confidence 345577777777778889999999999999885
No 136
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=24.94 E-value=3.8e+02 Score=27.02 Aligned_cols=62 Identities=8% Similarity=0.091 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCceEEeeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCccccCChhhHHHHHHHHHH
Q 012639 163 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 228 (459)
Q Consensus 163 L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L---~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~ 228 (459)
++...+.....++|..| -+..+++++++.. .+.|++-++++| |.|...+-...++.+.+..+
T Consensus 59 ~~~~~~~~~g~~pvi~g--v~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia~ 123 (294)
T TIGR02313 59 IENAIDQIAGRIPFAPG--TGALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVAD 123 (294)
T ss_pred HHHHHHHhCCCCcEEEE--CCcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHHH
Confidence 33333333334666655 3567888888754 456999999988 55766554444444444333
No 137
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.93 E-value=8.8e+02 Score=26.03 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=70.3
Q ss_pred ccCCCHHHHHHH---HHHCCCCEEEEEecCC-ccccCChhhHHHHHHHHHHHhccCCCCcEEE--ecCCCCCHHHHHHHH
Q 012639 182 YWYPFTEEAVQQ---IKRDRITRLVVLPLYP-QFSISTTGSSIRVLQNIFREDAYLSRLPVSI--IRSWYQREGYVNSMA 255 (459)
Q Consensus 182 Y~~P~i~eaL~~---L~~~Gv~rIvvlPLyP-qyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~--i~~~~~~p~yI~ala 255 (459)
+-.-.+++++++ |.+.|+++|+++-.-. .|..-..+..+.++.+.+.+. .+...+++ ..+..-++.++++++
T Consensus 175 ~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~--~~~~rir~~~~~p~~l~~ell~~~~ 252 (445)
T PRK14340 175 ERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRA--APEMRIRFTTSHPKDISESLVRTIA 252 (445)
T ss_pred CcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhc--CCCcEEEEccCChhhcCHHHHHHHH
Confidence 444556777665 5568999999875421 111111111233333333321 12233444 222223344444443
Q ss_pred HHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCcc-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCcc-CCCCCCCc
Q 012639 256 DLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVG-PVKWLKPY 333 (459)
Q Consensus 256 ~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G-~~~WL~P~ 333 (459)
+ .+..- ..+-+..=|.-.+..+.-+-.| ..+..+.++.+.+.. .|+ .+...|. +| |.+ ..=+
T Consensus 253 ~--------~~~g~-~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~--pgi--~i~td~I--vGfPgE-T~ed 316 (445)
T PRK14340 253 A--------RPNIC-NHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAI--PGV--TLSTDLI--AGFCGE-TEED 316 (445)
T ss_pred h--------CCCCC-CeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhC--CCC--EEeccEE--EECCCC-CHHH
Confidence 2 11100 1233333222222222223345 456666666665553 133 1222222 25 433 4556
Q ss_pred HHHHHHHhhhcCCceEEEEcc
Q 012639 334 TDEVLVELGQKGVKSLLAIPV 354 (459)
Q Consensus 334 t~d~L~~L~~~G~k~VvVvPi 354 (459)
.+++++-+.+.+...+.+.++
T Consensus 317 f~~tl~~~~~~~~~~~~~f~~ 337 (445)
T PRK14340 317 HRATLSLMEEVRFDSAFMFYY 337 (445)
T ss_pred HHHHHHHHHhcCCCEEeeEEe
Confidence 677777777778888877765
No 138
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=24.81 E-value=1.7e+02 Score=26.71 Aligned_cols=76 Identities=12% Similarity=-0.016 Sum_probs=54.4
Q ss_pred ccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHcCCc------------cccCCCCCCCC
Q 012639 354 VSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSA------------LAMSAPKNISQ 421 (459)
Q Consensus 354 igFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l~~~------------~~~~~~~~~~c 421 (459)
|.+-+||. =+|+..+.++..++.|.+...+-+.-.|.|.+...+++.|.+.-... -+.++-...||
T Consensus 3 I~igsDha--G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRa 80 (141)
T PRK12613 3 IILGADAH--GNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVA 80 (141)
T ss_pred EEEEeCcc--hHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEE
Confidence 56678999 67888888888889998766655545688999999999996643210 12244466889
Q ss_pred CCCCChhHHH
Q 012639 422 EDDHNPVRYA 431 (459)
Q Consensus 422 ~~c~~~~~~~ 431 (459)
-.|.++....
T Consensus 81 A~~~d~~~A~ 90 (141)
T PRK12613 81 AEVSDERSAY 90 (141)
T ss_pred EEECCHHHHH
Confidence 9999875543
No 139
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.27 E-value=2.7e+02 Score=28.04 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=42.2
Q ss_pred cHHHHHHH---hhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEc-CCCCCCHHHHHHHHH
Q 012639 333 YTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRV-PALNCTPSFITDLAD 401 (459)
Q Consensus 333 ~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rv-p~LNd~p~fi~aLad 401 (459)
+|+++++. ..+.|+..++++||.|..-.-| ++-.-+++++...+..-+.|- +..+-+|..+..|++
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~---~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLINGEQE---GLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 46666654 4556999999999988653333 333346777776665544443 345667777777765
No 140
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.16 E-value=8.9e+02 Score=25.79 Aligned_cols=157 Identities=12% Similarity=0.116 Sum_probs=72.4
Q ss_pred ccCCCHHHHHHH---HHHCCCCEEEEEec-CCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHH
Q 012639 182 YWYPFTEEAVQQ---IKRDRITRLVVLPL-YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADL 257 (459)
Q Consensus 182 Y~~P~i~eaL~~---L~~~Gv~rIvvlPL-yPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~ 257 (459)
+-.-++++++++ +.+.|+++|+++-. +-.|.....+..+.++.+.+.+......+.|....+..-++.+++++++.
T Consensus 172 ~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~ 251 (437)
T PRK14331 172 ERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADI 251 (437)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcC
Confidence 334467787765 45689999988742 11221111111122333333221111123444444555567777766643
Q ss_pred HHHHHhhcCCCCceEEEEeeCCCchhhccccCCcc-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCcc-CCCCCCCcHH
Q 012639 258 IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVG-PVKWLKPYTD 335 (459)
Q Consensus 258 I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G-~~~WL~P~t~ 335 (459)
.+... .+-+..-|.-.+..+.-+-.| ..+..+.++.+.+.. .|+ .+...|. +| |. ...-+.+
T Consensus 252 -~~~~~--------~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~--~gi--~i~~d~I--vG~Pg-ET~ed~~ 315 (437)
T PRK14331 252 -PQVCE--------HLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYI--PDI--TFSTDII--VGFPT-ETEEDFE 315 (437)
T ss_pred -CccCC--------ceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhC--CCC--EEecCEE--EECCC-CCHHHHH
Confidence 00000 111222111111111112235 455666666665542 132 1122222 25 33 3566777
Q ss_pred HHHHHhhhcCCceEEEEcc
Q 012639 336 EVLVELGQKGVKSLLAIPV 354 (459)
Q Consensus 336 d~L~~L~~~G~k~VvVvPi 354 (459)
++++-+.+.+...+.++++
T Consensus 316 ~tl~~l~~l~~~~i~~f~~ 334 (437)
T PRK14331 316 ETLDVLKKVEFEQVFSFKY 334 (437)
T ss_pred HHHHHHHhcCcceeeeeEe
Confidence 7888888888877777655
No 141
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=23.44 E-value=4.5e+02 Score=26.44 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=34.0
Q ss_pred CCceEEeeeeccCCCHHHHHHHH---HHCCCCEEEEEecCCccccCChhhHHHHHHHHHH
Q 012639 172 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 228 (459)
Q Consensus 172 ~~~~V~~amrY~~P~i~eaL~~L---~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~ 228 (459)
..++|.+|- +..+++++++.. ++.|++-|+++| |.|...|....++.+.+..+
T Consensus 69 ~~~pvi~gv--~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 69 DQIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIA 124 (290)
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHHh
Confidence 345666553 466788888754 457999998877 66777665444444444433
No 142
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=23.42 E-value=7.9e+02 Score=24.96 Aligned_cols=136 Identities=12% Similarity=0.170 Sum_probs=76.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEe
Q 012639 242 RSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQ 321 (459)
Q Consensus 242 ~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQ 321 (459)
+++|-+|.....+++.|.++|.+.. |+.. ...++|.+.|..++.+.-+.+.+.+.. .....-++|.
T Consensus 145 PHiWldp~~~~~~a~~I~~~L~~~d-P~~~-----------~~y~~N~~~~~~~L~~l~~~~~~~l~~--~~~~~~i~~H 210 (311)
T PRK09545 145 MHIWLSPEIARATAVAIHDKLVELM-PQSK-----------AKLDANLKDFEAQLAQTDKQIGNQLAP--VKGKGYFVFH 210 (311)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhC-hhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCcEEEEC
Confidence 4678999999999999999997653 2211 122345667878888777777777642 1112122222
Q ss_pred cCc---------------cCCCCCCCcHHH---HHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeE
Q 012639 322 SRV---------------GPVKWLKPYTDE---VLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENW 383 (459)
Q Consensus 322 Sr~---------------G~~~WL~P~t~d---~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~ 383 (459)
..+ +..+=.+|+..+ .++.+.+.+++-|+ +-+.|-..-+ +.++++.|++ +
T Consensus 211 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If-~e~~~~~~~~----------~~la~e~g~~-v 278 (311)
T PRK09545 211 DAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVF-AEPQFRPAVI----------ESVAKGTSVR-M 278 (311)
T ss_pred chHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCChHHH----------HHHHHhcCCe-E
Confidence 111 111113465444 55556666775544 4445544433 4456678875 5
Q ss_pred EEcCCCCCC-----HHHHHHHHHHH
Q 012639 384 GRVPALNCT-----PSFITDLADAV 403 (459)
Q Consensus 384 ~rvp~LNd~-----p~fi~aLadlV 403 (459)
..+..++.. ..+.+.+...+
T Consensus 279 ~~ldpl~~~~~~~~~~Y~~~m~~n~ 303 (311)
T PRK09545 279 GTLDPLGTNIKLGKDSYSEFLSQLA 303 (311)
T ss_pred EEeccccccccCCHhHHHHHHHHHH
Confidence 566666532 45555554433
No 143
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=23.30 E-value=3.9e+02 Score=26.57 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHC---CCCEEEEEecCCccccCChhhHHHHHHHHHHH
Q 012639 156 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRD---RITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 229 (459)
Q Consensus 156 T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~---Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~ 229 (459)
.++..+.++...+.....++|..|- +..+++++++..+.. |++-|+++| |.|-..+....++.+.+..+.
T Consensus 50 ~~Er~~~~~~~~~~~~~~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNGRVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAEE 122 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHhc
No 144
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=23.01 E-value=5.5e+02 Score=29.79 Aligned_cols=152 Identities=24% Similarity=0.308 Sum_probs=85.5
Q ss_pred EEEecCCccccCChhhHH--HHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCC
Q 012639 203 VVLPLYPQFSISTTGSSI--RVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGV 280 (459)
Q Consensus 203 vvlPLyPqyS~~Ttgs~~--~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGl 280 (459)
+-+|++|- +|.||.. ..+.++.+.... +. -+...|-+++.+.|++.++... +..|=...||=
T Consensus 423 ~~~p~~~t---t~IGSfPrp~~l~~ar~~~~~-g~---------i~~~~~~~~~~~~i~~~V~~Qe---~~GlDvltdGE 486 (758)
T PRK05222 423 LNLPLLPT---TTIGSFPQTTEIRKARAAFKK-GE---------LSEEEYEAFIREEIARAIRLQE---ELGLDVLVHGE 486 (758)
T ss_pred hCCCCCcc---cccCCCCCCHHHHHHHHHHhc-CC---------CCHHHHHHHHHHHHHHHHHHHH---HcCCCEeecCc
Confidence 44677763 7778775 344444433221 11 1446677777777777765431 12232346665
Q ss_pred chhhccccCCccHHHHHHHHHHHHHHHhhcCCC---CCeeEEEecCc-------cCCCCCCCcHHHHH---HHhhhcCCc
Q 012639 281 PVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN---NDHTLAYQSRV-------GPVKWLKPYTDEVL---VELGQKGVK 347 (459)
Q Consensus 281 P~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~---~~~~lafQSr~-------G~~~WL~P~t~d~L---~~L~~~G~k 347 (459)
+.+ +| .+....++|. |+. +.|...|-|+. |...|-.|.+-+-+ +.+....+|
T Consensus 487 ~~R-----~d--------~v~~F~~~l~--Gf~~~~~g~v~~~g~~~~r~p~i~G~i~~~~p~~v~~~~~aq~~t~~~vK 551 (758)
T PRK05222 487 FER-----ND--------MVEYFGEQLD--GFAFTQNGWVQSYGSRCVKPPIIYGDVSRPEPMTVEWIKYAQSLTDKPVK 551 (758)
T ss_pred eee-----ee--------hHHHHHHhCC--CeeecCCceeeeeCCcCCCCCeeeCCCcCCCCCchHHHHHHHhccCCCCc
Confidence 432 22 3455667763 552 24544444443 77777788864444 444344567
Q ss_pred eEEEEccccc--------ccchhhhHhHHHHHHHHH---HHcCCeeEEEc
Q 012639 348 SLLAIPVSFV--------SEHIETLEEIDMEYKELA---LESGIENWGRV 386 (459)
Q Consensus 348 ~VvVvPigFv--------sDhlETL~EidiE~ke~a---~e~G~~~~~rv 386 (459)
-++-=|+.+. .+.-|.+++|...+++.. .++|+. +..+
T Consensus 552 ~~ltGP~T~~~~s~~r~~~~~~e~~~dlA~al~~Ev~~L~~aG~~-~IQi 600 (758)
T PRK05222 552 GMLTGPVTILNWSFVRDDQPREETARQIALAIRDEVLDLEAAGIK-IIQI 600 (758)
T ss_pred EEEecHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEe
Confidence 7777777665 345778888888776443 468875 4444
No 145
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=22.82 E-value=1.5e+02 Score=29.28 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=53.4
Q ss_pred CCCCCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH------HHHHH
Q 012639 327 VKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF------ITDLA 400 (459)
Q Consensus 327 ~~WL~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~f------i~aLa 400 (459)
.+.+.|.+ -.++.|.+.|+|+|.|+-|. ..|++...++.+++.|++ +....++|....+ -+.+.
T Consensus 102 ~p~tt~~~-A~~~AL~alg~~RIalvTPY--------~~~v~~~~~~~l~~~G~e-V~~~~~~~~~~~~~ia~i~p~~i~ 171 (239)
T TIGR02990 102 TPVVTPSS-AAVDGLAALGVRRISLLTPY--------TPETSRPMAQYFAVRGFE-IVNFTCLGLTDDREMARISPDCIV 171 (239)
T ss_pred CCeeCHHH-HHHHHHHHcCCCEEEEECCC--------cHHHHHHHHHHHHhCCcE-EeeeeccCCCCCceeeecCHHHHH
Confidence 34445543 36677777799999999662 445556678888999996 5566567774332 13445
Q ss_pred HHHHHHcCC-ccccCCCCCCCCCCCCChhHHHHH
Q 012639 401 DAVIEALPS-ALAMSAPKNISQEDDHNPVRYAIK 433 (459)
Q Consensus 401 dlV~e~l~~-~~~~~~~~~~~c~~c~~~~~~~~k 433 (459)
+.+++.-.. .++ .- -.|+|-++...-
T Consensus 172 ~~~~~~~~~~aDA----if---isCTnLrt~~vi 198 (239)
T TIGR02990 172 EAALAAFDPDADA----LF---LSCTALRAATCA 198 (239)
T ss_pred HHHHHhcCCCCCE----EE---EeCCCchhHHHH
Confidence 555554221 111 11 138887776543
No 146
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=22.71 E-value=1.3e+02 Score=33.36 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecC
Q 012639 161 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 208 (459)
Q Consensus 161 ~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLy 208 (459)
+.+.+.+.+.|.++.|.-| .=.+|+++|-++.+.+-+.++|+++|==
T Consensus 324 ~g~~~~f~~~Ga~~vi~gg-qt~nPS~~dll~ai~~~~a~~V~iLPNn 370 (530)
T TIGR03599 324 EGIAELFKSLGADVVIEGG-QTMNPSTEDILKAIEKVNAKNVFVLPNN 370 (530)
T ss_pred chHHHHHHHCCCCEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEecCC
Confidence 4456666666665544333 4458999999999988899999998853
No 147
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=22.58 E-value=9.2e+02 Score=25.40 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=33.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhc-CCCceEEeeeeccCC--CHHHHHHHHHHCCCCEEEEEec
Q 012639 146 IGGGSPLRKITDEQAQALKTALEAK-NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPL 207 (459)
Q Consensus 146 IgggSPL~~~T~~qa~~L~~~L~~~-~~~~~V~~amrY~~P--~i~eaL~~L~~~Gv~rIvvlPL 207 (459)
+|||.|-.--.. +.+.|-+.+.+. +......+.+. .+| ...+-++.|++.|+++|-+=..
T Consensus 72 ~GGGTps~l~~~-~l~~ll~~i~~~~~~~~~~eit~E-~~P~~lt~e~l~~l~~~GvnrislGvQ 134 (400)
T PRK07379 72 FGGGTPSLLSVE-QLERILTTLDQRFGIAPDAEISLE-IDPGTFDLEQLQGYRSLGVNRVSLGVQ 134 (400)
T ss_pred ECCCccccCCHH-HHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHCCCCEEEEEcc
Confidence 499999754222 223333333221 11112333333 444 3467899999999999876544
No 148
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.33 E-value=4.5e+02 Score=21.69 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=31.4
Q ss_pred ceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHHHHHHHH
Q 012639 347 KSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLAD 401 (459)
Q Consensus 347 k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~fi~aLad 401 (459)
-.+||++..+++-.+ --..++.|++.|.. +.++..-+-+ .|.++|.+
T Consensus 49 aD~VIv~t~~vsH~~------~~~vk~~akk~~ip-~~~~~~~~~~-~l~~~l~~ 95 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNA------MWKVKKAAKKYGIP-IIYSRSRGVS-SLERALER 95 (97)
T ss_pred CCEEEEEeCCcChHH------HHHHHHHHHHcCCc-EEEECCCCHH-HHHHHHHh
Confidence 378898988888443 23478899999985 7777655544 55555543
No 149
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=22.31 E-value=1.4e+02 Score=30.41 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe
Q 012639 331 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 381 (459)
Q Consensus 331 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~ 381 (459)
.+.+.++++++.+.|+|.++|+.=||- +.| ..+.++.+++.|+.
T Consensus 75 ~~~v~~~l~e~~~~gvk~avI~s~Gf~------~~~-~~~l~~~a~~~gir 118 (291)
T PRK05678 75 PPFAADAILEAIDAGIDLIVCITEGIP------VLD-MLEVKAYLERKKTR 118 (291)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC------HHH-HHHHHHHHHHcCCE
Confidence 467899999999999999999998884 221 13677888888874
No 150
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=22.23 E-value=5.5e+02 Score=25.57 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhccccCCccHHHHHHHHHHHHHHHhhcCCCC-CeeEEEecCccCCCCC
Q 012639 252 NSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINN-DHTLAYQSRVGPVKWL 330 (459)
Q Consensus 252 ~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~-~~~lafQSr~G~~~WL 330 (459)
.++.+||.++++-+.......+|+|+-.- ++.|. |-+.+.+.+. +.|++. ...+-++|
T Consensus 64 ~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~--------~~~~~-Ea~~M~~yLi----~~GVp~e~Ii~e~~s-------- 122 (239)
T PRK10834 64 QYYRYRIQGAINAYNSGKVNYLLLSGDNA--------LQSYN-EPMTMRKDLI----AAGVDPSDIVLDYAG-------- 122 (239)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCC--------CCCCC-HHHHHHHHHH----HcCCCHHHEEecCCC--------
Confidence 34567777776533222224689999531 23352 3333333333 338862 35555555
Q ss_pred CCcHHHHHHHhhhc-CCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEE
Q 012639 331 KPYTDEVLVELGQK-GVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR 385 (459)
Q Consensus 331 ~P~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~r 385 (459)
=+|.|-+...++- +.++++||.=.| |++- +.-+|++.|++.+.+
T Consensus 123 -~nT~en~~~a~~i~~~~~~iIVTq~f---Hm~R-------A~~ia~~~Gi~~~~~ 167 (239)
T PRK10834 123 -FRTLDSIVRTRKVFDTNDFIIITQRF---HCER-------ALFIALHMGIQAQCY 167 (239)
T ss_pred -CCHHHHHHHHHHHhCCCCEEEECCHH---HHHH-------HHHHHHHcCCceEEE
Confidence 3566666555443 566777766544 7743 567788999975544
No 151
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.95 E-value=2.7e+02 Score=28.33 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=40.0
Q ss_pred CcHHHHHH---HhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHc-CCeeEEE-cCCC---CCCHHHHHHHH
Q 012639 332 PYTDEVLV---ELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALES-GIENWGR-VPAL---NCTPSFITDLA 400 (459)
Q Consensus 332 P~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~-G~~~~~r-vp~L---Nd~p~fi~aLa 400 (459)
.+|+++++ ...+.|+..|+++||.+..-.-|-+++ =++++++.. +..-+.| .|.. +-++..+..|+
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~---yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQ---FYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHH---HHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 55666554 445669999999988776633333333 367787776 4555555 5533 55666665554
No 152
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.92 E-value=6.4e+02 Score=24.79 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeeeeccCCCHHHHHHHHHHCCCCEEEEEecCCccccCChhhHHHHHHHHHHHhccCCC
Q 012639 156 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSR 235 (459)
Q Consensus 156 T~~qa~~L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~~~~~~~~~~ 235 (459)
-.+....+++.+.+.| +.+-+......+..+++++.|.+.+++-+|+.+.... .+.+.+..+. +
T Consensus 16 f~~ii~gIe~~a~~~G--y~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~---------~~~l~~~~~~-----~ 79 (279)
T PF00532_consen 16 FAEIIRGIEQEAREHG--YQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND---------DEELRRLIKS-----G 79 (279)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT---------CHHHHHHHHT-----T
T ss_pred HHHHHHHHHHHHHHcC--CEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC---------hHHHHHHHHc-----C
Confidence 3456777788887764 7777888888888889999999999999999854321 1233333332 3
Q ss_pred CcEEEecCCCCCH
Q 012639 236 LPVSIIRSWYQRE 248 (459)
Q Consensus 236 ~~~~~i~~~~~~p 248 (459)
+|+-++++..+.+
T Consensus 80 iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 80 IPVVLIDRYIDNP 92 (279)
T ss_dssp SEEEEESS-SCTT
T ss_pred CCEEEEEeccCCc
Confidence 5677777765544
No 153
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=21.89 E-value=1e+02 Score=32.38 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=37.2
Q ss_pred CCCCC-cHHHHHHHhhhc-CCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEEcCCCCCCHHH
Q 012639 328 KWLKP-YTDEVLVELGQK-GVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSF 395 (459)
Q Consensus 328 ~WL~P-~t~d~L~~L~~~-G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~rvp~LNd~p~f 395 (459)
.|-+| .=...|..++++ |+..|+..-.-...+-.=+..+| .+.|+..+++|. .+..+++++-++..
T Consensus 6 rw~g~~~dpv~l~~irQ~~Gv~giV~al~~~p~g~~W~~e~i-~~~k~~ie~~GL-~~~vIEsvpv~e~I 73 (351)
T PF03786_consen 6 RWFGPEDDPVTLWDIRQQPGVTGIVTALHDIPNGEVWDYEEI-RALKERIEAAGL-TLSVIESVPVHEDI 73 (351)
T ss_dssp E---TTT-SS-HHHHCTSTTEEEEEE--SSS-TTS---HHHH-HHHHHHHHCTT--EEEEEES----HHH
T ss_pred eeeCCCCCcchHHHHHHhcCCCCeeeCCCCCCCCCCCCHHHH-HHHHHHHHHcCC-eEEEEecCChHHHH
Confidence 48888 555678889988 99999987666666555455554 345788889999 58899988877644
No 154
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.68 E-value=3.3e+02 Score=26.45 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCcHHHHHHHhhhcCCceEEEEcccccccchhhh--HhHHHHH-HHHHHHcCCeeEEEcCCCCCCHHHHHHHHHHHHHHc
Q 012639 331 KPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETL--EEIDMEY-KELALESGIENWGRVPALNCTPSFITDLADAVIEAL 407 (459)
Q Consensus 331 ~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL--~EidiE~-ke~a~e~G~~~~~rvp~LNd~p~fi~aLadlV~e~l 407 (459)
.|..-.+|+.|.+.|.+-++ .|-.-+|--+ |++-.+. ++.+++.|++ |.-.+. ++...|.+..-+. -
T Consensus 13 APcs~y~le~l~~~~~~i~~----yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~-~iegdY-~~~~~w~~~vKg~----E 82 (204)
T COG1636 13 APCSGYVLEKLRDSGIKITI----YFYNPNIHPLSEYELRKEEVKRFAEKFGIN-FIEGDY-EDLEKWFERVKGM----E 82 (204)
T ss_pred CCCcHHHHHHHHhcCcceEE----EEeCCCCCchHHHHHHHHHHHHHHHHcCCe-eeecCc-ccHHHHHHHhhcc----h
Confidence 58888899999888765433 3444444333 3443333 5678889974 555542 2555576444331 1
Q ss_pred CCccccCCCCCCCCCCCCChhHHHHHHHHHH----HHHHHHHhChh
Q 012639 408 PSALAMSAPKNISQEDDHNPVRYAIKMFFGS----ILAFVLFFSPR 449 (459)
Q Consensus 408 ~~~~~~~~~~~~~c~~c~~~~~~~~k~~~~~----~~~~~~~~~~~ 449 (459)
. .+-...||.+|..-|=..+..+=.. .+.-.|++||+
T Consensus 83 ~-----EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ftttL~iSp~ 123 (204)
T COG1636 83 D-----EPEGGKRCTMCFDMRLEKTAKKAKELGFDVFTTTLLISPK 123 (204)
T ss_pred h-----CCCCCchhHhHHHHHHHHHHHHHHHcCCchhhhheecCcc
Confidence 1 1123469999998877666554222 23446788886
No 155
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.65 E-value=6e+02 Score=25.32 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCceEEeeeeccCCCHHHHHHH---HHHCCCCEEEEEecCCccccCChhhHHHHHHHH
Q 012639 163 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 226 (459)
Q Consensus 163 L~~~L~~~~~~~~V~~amrY~~P~i~eaL~~---L~~~Gv~rIvvlPLyPqyS~~Ttgs~~~~l~~~ 226 (459)
++...+.....+.|..| -+..+++++++. .++.|++-++++| |.|...+....++.+.+.
T Consensus 60 ~~~~~~~~~~~~~viag--v~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~~~~~~~i~~~~~~v 122 (288)
T cd00954 60 AEIVAEAAKGKVTLIAH--VGSLNLKESQELAKHAEELGYDAISAIT--PFYYKFSFEEIKDYYREI 122 (288)
T ss_pred HHHHHHHhCCCCeEEec--cCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCCCCHHHHHHHHHHH
Confidence 33333333335666665 345778888874 4567999999887 445444433333434333
No 156
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.48 E-value=2.1e+02 Score=30.78 Aligned_cols=49 Identities=33% Similarity=0.464 Sum_probs=35.8
Q ss_pred CcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe
Q 012639 332 PYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE 381 (459)
Q Consensus 332 P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~ 381 (459)
..+.++++++.+.|+|.++++.=||-....| =.++..+..+.+++.|+.
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~-g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEE-GAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccCcc-hHHHHHHHHHHHHHcCCE
Confidence 4668899999999999999988888763322 223455677888888874
No 157
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=21.44 E-value=4.2e+02 Score=28.79 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=46.4
Q ss_pred EEEeeCCCchhh-ccccCCccHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHhhhc------C
Q 012639 273 IFFSAHGVPVSY-VEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQK------G 345 (459)
Q Consensus 273 LLFSaHGlP~~~-v~~~GDpY~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~------G 345 (459)
+-+|.|.+--.. ..--|++-..++.+..+.+++. |+.-.-.+++-- |-. -+..++.+|+.|.+. +
T Consensus 142 l~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~----~I~~h~qiVlcP--GiN--Dg~~L~~Ti~dL~~~~~~~~P~ 213 (433)
T TIGR03279 142 LYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER----RLQLHAQVVVCP--GIN--DGKHLERTLRDLAQFHDGDWPT 213 (433)
T ss_pred EEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc----CCeEEEEEEEcC--CcC--CHHHHHHHHHHHHhhcccCCCc
Confidence 667888874221 0002566665555555555443 553222233321 111 357889999999876 4
Q ss_pred CceEEEEcccccc
Q 012639 346 VKSLLAIPVSFVS 358 (459)
Q Consensus 346 ~k~VvVvPigFvs 358 (459)
+.+|.|||+|++-
T Consensus 214 v~S~avVPVGlTk 226 (433)
T TIGR03279 214 VLSVAVVPVGLTR 226 (433)
T ss_pred eeEEEEEcccccc
Confidence 7999999999875
No 158
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=21.39 E-value=55 Score=24.26 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=11.1
Q ss_pred eeeeccCCCHHHHHHHH
Q 012639 178 VGMRYWYPFTEEAVQQI 194 (459)
Q Consensus 178 ~amrY~~P~i~eaL~~L 194 (459)
.||+|..|.+++|++++
T Consensus 31 ~GF~F~~p~l~~AL~~l 47 (48)
T PF08338_consen 31 AGFQFRYPTLEEALRDL 47 (48)
T ss_dssp TT---S-SSHHHHHHH-
T ss_pred CCCcccCCCHHHHHhcc
Confidence 58999999999999886
No 159
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.29 E-value=4.6e+02 Score=22.91 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=43.7
Q ss_pred CCc-hHHHHHHHHHHHHHHHHhcCCCceEEeeeec--------------cCCCHHHHHHHHHHCCCCEEEEEecCCcccc
Q 012639 149 GSP-LRKITDEQAQALKTALEAKNLPVNVYVGMRY--------------WYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 213 (459)
Q Consensus 149 gSP-L~~~T~~qa~~L~~~L~~~~~~~~V~~amrY--------------~~P~i~eaL~~L~~~Gv~rIvvlPLyPqyS~ 213 (459)
||| -...|+..++.+.+.|.+.+.++++.---.| .++.+++.++++.+ +|-||+. .|-|-.
T Consensus 8 gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~--aD~iI~~--sP~y~~ 83 (152)
T PF03358_consen 8 GSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE--ADGIIFA--SPVYNG 83 (152)
T ss_dssp SSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH--SSEEEEE--EEEBTT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec--CCeEEEe--ecEEcC
Confidence 577 7889999999999999876544444422222 34455555666655 3544433 244445
Q ss_pred CChhhHHHHHHHH
Q 012639 214 STTGSSIRVLQNI 226 (459)
Q Consensus 214 ~Ttgs~~~~l~~~ 226 (459)
..+|...+.++..
T Consensus 84 ~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 84 SVSGQLKNFLDRL 96 (152)
T ss_dssp BE-HHHHHHHHTH
T ss_pred cCChhhhHHHHHh
Confidence 5566555555544
No 160
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.08 E-value=3.5e+02 Score=27.04 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCcHHHHHH---HhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHc-CCeeEEE-cC---CCCCCHHHHHHHHH
Q 012639 331 KPYTDEVLV---ELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALES-GIENWGR-VP---ALNCTPSFITDLAD 401 (459)
Q Consensus 331 ~P~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~-G~~~~~r-vp---~LNd~p~fi~aLad 401 (459)
..+|+++++ ...+.|+..|+++||.+..-. -.+|-.-++++++.. +..-+.| .| ..+-++.++..|++
T Consensus 79 ~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~---~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 79 SLNLKESQELAKHAEELGYDAISAITPFYYKFS---FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 356766665 446679999999998887622 234444467777766 5554444 33 34557777766654
No 161
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.00 E-value=1.1e+03 Score=25.49 Aligned_cols=155 Identities=10% Similarity=0.098 Sum_probs=72.4
Q ss_pred ccCCCHHHHHHH---HHHCCCCEEEEEec-CCccccCChhhHHHHHHHHHHHhccCCCCcEEEecCCCCCHHHHHHHHHH
Q 012639 182 YWYPFTEEAVQQ---IKRDRITRLVVLPL-YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADL 257 (459)
Q Consensus 182 Y~~P~i~eaL~~---L~~~Gv~rIvvlPL-yPqyS~~Ttgs~~~~l~~~~~~~~~~~~~~~~~i~~~~~~p~yI~ala~~ 257 (459)
+-.-++++.+++ +.+.|+++|+++-. +..|..- .....+.+.+ +.+......+.+....+..-++.+++++++.
T Consensus 180 ~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~-l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 257 (449)
T PRK14332 180 ERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQM-LLDETTIERIRFTSPHPKDFPDHLLSLMAKN 257 (449)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHH-HhcCCCcceEEEECCCcccCCHHHHHHHHhC
Confidence 344557777665 45689999998854 2223211 1112222222 2221111123333333334455566555432
Q ss_pred HHHHHhhcCCCCceEEEEeeCCCchhhccccCCcc-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCcc-CCCCCCCcHH
Q 012639 258 IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPY-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVG-PVKWLKPYTD 335 (459)
Q Consensus 258 I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY-~~q~~~t~~~v~e~L~~~g~~~~~~lafQSr~G-~~~WL~P~t~ 335 (459)
++-- ..+-+..=|.-.+..+.-+-.| ..+..+.++.+.+... |+ .+...| -+| |. ...=+.+
T Consensus 258 --------~~~~-~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p--~i--~i~td~--IvGfPg-ET~edf~ 321 (449)
T PRK14332 258 --------PRFC-PNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP--DV--GITTDI--IVGFPN-ETEEEFE 321 (449)
T ss_pred --------CCcc-ceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC--CC--EEEEEE--EeeCCC-CCHHHHH
Confidence 1100 0122222221112222222335 4566666666655431 11 222222 235 33 3566778
Q ss_pred HHHHHhhhcCCceEEEEcc
Q 012639 336 EVLVELGQKGVKSLLAIPV 354 (459)
Q Consensus 336 d~L~~L~~~G~k~VvVvPi 354 (459)
++++-+.+.+...+-++++
T Consensus 322 ~tl~~v~~l~~~~~~~f~y 340 (449)
T PRK14332 322 DTLAVVREVQFDMAFMFKY 340 (449)
T ss_pred HHHHHHHhCCCCEEEEEEe
Confidence 8888888888888888876
No 162
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.83 E-value=8e+02 Score=24.04 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=44.0
Q ss_pred CCcHHHHHH---HhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEE-cCC---CCCCHHHHHHHHH
Q 012639 331 KPYTDEVLV---ELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR-VPA---LNCTPSFITDLAD 401 (459)
Q Consensus 331 ~P~t~d~L~---~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~r-vp~---LNd~p~fi~aLad 401 (459)
.++|+++++ ...+.|+..|+++||.|..-. -.++-.-++++++..+..-+.| .|. .+-++.++..|++
T Consensus 75 ~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~---~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 75 ANSTREAIELARHAEEAGADGVLVVPPYYNKPS---QEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCC---HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 366776665 455679999999999988822 2444445678887665554433 443 4556777766654
No 163
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=20.81 E-value=5.6e+02 Score=24.60 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 012639 370 EYKELALESGIE---NWGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 370 E~ke~a~e~G~~---~~~rvp~LNd~p~fi~aLadlV~e 405 (459)
+..+.+.+.|++ ++..+|..||++.=++.+++.+.+
T Consensus 152 ~~i~~l~~~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~ 190 (246)
T PRK11145 152 EFARYLAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKD 190 (246)
T ss_pred HHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334455667765 456789999999888888888876
No 164
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=20.59 E-value=1e+02 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEec
Q 012639 184 YPFTEEAVQQIKRDRITRLVVLPL 207 (459)
Q Consensus 184 ~P~i~eaL~~L~~~Gv~rIvvlPL 207 (459)
...+.+.+++|++.|.+.|+++|+
T Consensus 73 ~~~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 73 EKVVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred HHHHHHHHHHHHHcCCCeEEEech
Confidence 455778999999999999999996
No 165
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.38 E-value=8.3e+02 Score=24.05 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=42.1
Q ss_pred CCcHHHHHHH---hhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCeeEEE-cCC---CCCCHHHHHHHHH
Q 012639 331 KPYTDEVLVE---LGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGR-VPA---LNCTPSFITDLAD 401 (459)
Q Consensus 331 ~P~t~d~L~~---L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~~~~r-vp~---LNd~p~fi~aLad 401 (459)
.++++++++. +.+.|++.|+++||.|..-.- .++-.=++++++..+..-+.| .|. ..-++.+++.|++
T Consensus 78 ~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~---~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 78 SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQ---EGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCH---HHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 3577777654 456799999999998865322 333334678887666654444 332 2345666665554
No 166
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=20.34 E-value=6.7e+02 Score=26.38 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhHHhhhccC----CCCchHHHHHH--HHHHHHHHHHhcCCCceEEeeeecc--CCCHHHHHHHHHHCCCCEEEEEecCC
Q 012639 138 KSKEGYAAIG----GGSPLRKITDE--QAQALKTALEAKNLPVNVYVGMRYW--YPFTEEAVQQIKRDRITRLVVLPLYP 209 (459)
Q Consensus 138 k~~~~Y~~Ig----ggSPL~~~T~~--qa~~L~~~L~~~~~~~~V~~amrY~--~P~i~eaL~~L~~~Gv~rIvvlPLyP 209 (459)
+-++.+.+-| ||-||..+.+- -+++|+..+ |.++-+.. |+ .=-.+++++.|.+.|.|+|-+=|-
T Consensus 72 ~ea~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~ef---G~~fHiHL---YT~g~~~~~e~l~~L~eAGLDEIRfHp~-- 143 (353)
T COG2108 72 EEAKLMDALGASITGGDPLLEIERTVEYIRLLKDEF---GEDFHIHL---YTTGILATEEALKALAEAGLDEIRFHPP-- 143 (353)
T ss_pred HHHHHhccccccccCCChHHHHHHHHHHHHHHHHhh---ccceeEEE---eeccccCCHHHHHHHHhCCCCeEEecCC--
Q ss_pred ccccCChhhHHHHHHHHHH
Q 012639 210 QFSISTTGSSIRVLQNIFR 228 (459)
Q Consensus 210 qyS~~Ttgs~~~~l~~~~~ 228 (459)
+......-.+.+.+..+.+
T Consensus 144 ~~~~~~~e~~i~~l~~A~~ 162 (353)
T COG2108 144 RPGSKSSEKYIENLKIAKK 162 (353)
T ss_pred CccccccHHHHHHHHHHHH
No 167
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.23 E-value=88 Score=35.96 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHhhhcCCceEEEEcccccccchhhhHhHH
Q 012639 330 LKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEID 368 (459)
Q Consensus 330 L~P~t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~Eid 368 (459)
+.|+..+++++|.++|++ ++ +.+-||-+|-..+.
T Consensus 538 ~R~~a~~aI~~L~~~Gi~-~~----mLTGDn~~~A~~iA 571 (713)
T COG2217 538 LRPDAKEAIAALKALGIK-VV----MLTGDNRRTAEAIA 571 (713)
T ss_pred CChhHHHHHHHHHHCCCe-EE----EEcCCCHHHHHHHH
Confidence 789999999999999998 32 45669988854443
No 168
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=20.12 E-value=3.7e+02 Score=23.97 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=24.4
Q ss_pred ceEEeeeeccCC-----CHHHHHHHHHHCCCCEEEEEecCCc
Q 012639 174 VNVYVGMRYWYP-----FTEEAVQQIKRDRITRLVVLPLYPQ 210 (459)
Q Consensus 174 ~~V~~amrY~~P-----~i~eaL~~L~~~Gv~rIvvlPLyPq 210 (459)
..|...+-++-| .+.+.++.+.+.|+++|.+.|+.|.
T Consensus 151 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 192 (216)
T smart00729 151 IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPR 192 (216)
T ss_pred cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeC
Confidence 445555555544 4444566667789999999888875
No 169
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=20.01 E-value=3.5e+02 Score=27.86 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=42.1
Q ss_pred HHHHHHHhhhcCCceEEEEcccccccchhhhHhHHHHHHHHHHHcCCe---eEEEcCCCCCCHHHHHHHHHHHHH
Q 012639 334 TDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIE---NWGRVPALNCTPSFITDLADAVIE 405 (459)
Q Consensus 334 t~d~L~~L~~~G~k~VvVvPigFvsDhlETL~EidiE~ke~a~e~G~~---~~~rvp~LNd~p~fi~aLadlV~e 405 (459)
|++.++.|.+.|.+.+++. ..+|-..+.+--.++-+.+.++|+. +.+.++..||++.-.+.|.+.+.+
T Consensus 209 t~el~~~L~~~~~~~~~vs----h~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~ 279 (331)
T TIGR00238 209 TDELCELLASFELQLMLVT----HINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFK 279 (331)
T ss_pred CHHHHHHHHhcCCcEEEEc----cCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhh
Confidence 5566777777676544332 1245432344445555666778876 466778889998877777776654
Done!