Query 012641
Match_columns 459
No_of_seqs 232 out of 3482
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-57 4.3E-62 480.3 22.0 430 1-444 325-792 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-38 6.2E-43 351.0 22.2 284 1-317 359-693 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.8 1.1E-19 2.3E-24 173.6 1.2 121 1-122 165-285 (287)
4 KOG0472 Leucine-rich repeat pr 99.7 8.9E-19 1.9E-23 163.4 -0.1 97 193-292 201-297 (565)
5 KOG0444 Cytoskeletal regulator 99.7 5.2E-18 1.1E-22 166.1 -0.3 230 192-440 97-380 (1255)
6 KOG0444 Cytoskeletal regulator 99.7 5.5E-18 1.2E-22 165.9 -1.0 236 179-431 35-300 (1255)
7 PLN03210 Resistant to P. syrin 99.6 1E-14 2.2E-19 163.2 13.1 43 398-440 867-911 (1153)
8 PLN00113 leucine-rich repeat r 99.6 7.6E-15 1.7E-19 163.2 11.1 219 196-433 116-367 (968)
9 KOG0617 Ras suppressor protein 99.6 2.1E-16 4.6E-21 131.4 -1.8 148 188-352 23-184 (264)
10 KOG0472 Leucine-rich repeat pr 99.5 1.5E-16 3.2E-21 148.7 -6.0 217 199-438 69-312 (565)
11 PLN00113 leucine-rich repeat r 99.5 3.4E-14 7.5E-19 158.0 10.9 221 196-434 138-392 (968)
12 KOG4194 Membrane glycoprotein 99.5 6.3E-15 1.4E-19 143.8 4.0 239 197-440 148-433 (873)
13 KOG0618 Serine/threonine phosp 99.4 3.2E-14 6.9E-19 145.7 -1.0 91 199-292 46-136 (1081)
14 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.7E-19 121.0 -3.5 154 211-382 23-188 (264)
15 PRK15387 E3 ubiquitin-protein 99.4 3.7E-12 8E-17 133.8 11.8 216 179-433 204-456 (788)
16 KOG4194 Membrane glycoprotein 99.4 8.8E-13 1.9E-17 129.0 6.2 215 196-440 100-334 (873)
17 KOG0618 Serine/threonine phosp 99.3 1.7E-13 3.6E-18 140.6 0.3 221 197-434 240-488 (1081)
18 PRK15370 E3 ubiquitin-protein 99.3 2.5E-11 5.4E-16 128.2 12.0 112 183-318 185-296 (754)
19 PRK15387 E3 ubiquitin-protein 99.2 4.6E-11 9.9E-16 125.7 10.7 105 200-319 203-316 (788)
20 PRK15370 E3 ubiquitin-protein 99.2 5.1E-11 1.1E-15 125.9 8.9 208 181-433 204-426 (754)
21 KOG4237 Extracellular matrix p 99.0 5.4E-11 1.2E-15 111.7 1.5 94 223-317 68-176 (498)
22 KOG4237 Extracellular matrix p 99.0 9.9E-11 2.1E-15 109.9 3.1 237 179-430 49-354 (498)
23 KOG0532 Leucine-rich repeat (L 99.0 2.4E-11 5.2E-16 118.9 -4.2 181 222-432 75-270 (722)
24 PF14580 LRR_9: Leucine-rich r 98.9 4.8E-10 1E-14 97.2 2.5 128 198-349 19-148 (175)
25 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 94.7 2.9 115 210-351 8-123 (175)
26 KOG4658 Apoptotic ATPase [Sign 98.8 8.6E-10 1.9E-14 118.5 1.2 104 187-292 534-641 (889)
27 KOG0532 Leucine-rich repeat (L 98.8 2E-10 4.4E-15 112.5 -5.0 132 200-350 100-243 (722)
28 cd00116 LRR_RI Leucine-rich re 98.7 8.6E-09 1.9E-13 99.8 3.7 64 219-283 78-150 (319)
29 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.8E-13 72.5 3.6 60 222-282 1-61 (61)
30 KOG3207 Beta-tubulin folding c 98.7 7.3E-09 1.6E-13 98.8 2.8 206 197-430 120-334 (505)
31 COG4886 Leucine-rich repeat (L 98.6 2.7E-08 5.9E-13 99.4 4.6 34 398-431 253-286 (394)
32 cd00116 LRR_RI Leucine-rich re 98.6 1.4E-08 3.1E-13 98.2 1.1 138 198-352 23-176 (319)
33 KOG1259 Nischarin, modulator o 98.4 2.3E-08 5E-13 91.1 -2.2 132 219-380 281-412 (490)
34 PF13855 LRR_8: Leucine rich r 98.4 2.4E-07 5.1E-12 65.9 3.4 59 246-316 1-60 (61)
35 KOG3207 Beta-tubulin folding c 98.4 1.4E-07 3E-12 90.3 2.1 192 216-440 115-318 (505)
36 KOG1259 Nischarin, modulator o 98.3 2.2E-07 4.8E-12 84.8 1.8 132 246-416 284-415 (490)
37 PF12799 LRR_4: Leucine Rich r 98.3 8.7E-07 1.9E-11 58.1 3.8 41 246-287 1-41 (44)
38 PLN03150 hypothetical protein; 98.3 2.3E-06 5E-11 90.1 8.3 80 224-317 420-502 (623)
39 KOG0531 Protein phosphatase 1, 98.2 3.2E-07 7E-12 92.1 1.2 123 199-352 73-197 (414)
40 COG4886 Leucine-rich repeat (L 98.2 1.2E-06 2.6E-11 87.5 3.9 88 198-288 116-204 (394)
41 PLN03150 hypothetical protein; 98.2 4.6E-06 9.9E-11 87.9 7.8 105 199-317 419-527 (623)
42 KOG0531 Protein phosphatase 1, 98.1 1.3E-06 2.7E-11 87.9 1.1 106 195-317 92-198 (414)
43 KOG4579 Leucine-rich repeat (L 97.9 1.9E-06 4.1E-11 69.9 -0.7 88 198-288 53-141 (177)
44 KOG3665 ZYG-1-like serine/thre 97.8 1.6E-05 3.4E-10 84.0 4.0 82 244-350 146-229 (699)
45 KOG1859 Leucine-rich repeat pr 97.8 4.6E-07 1E-11 91.8 -7.2 128 196-351 162-289 (1096)
46 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6.1E-10 50.9 3.5 41 222-264 1-41 (44)
47 PRK15386 type III secretion pr 97.8 2.9E-05 6.3E-10 75.8 4.8 107 197-317 51-168 (426)
48 KOG1859 Leucine-rich repeat pr 97.6 8.4E-06 1.8E-10 82.9 -1.9 128 221-378 163-290 (1096)
49 KOG2982 Uncharacterized conser 97.6 2E-05 4.3E-10 72.3 0.5 43 398-440 222-267 (418)
50 PRK15386 type III secretion pr 97.5 0.00043 9.3E-09 67.8 9.2 62 219-286 49-111 (426)
51 KOG1644 U2-associated snRNP A' 97.4 0.00019 4.1E-09 62.4 4.5 107 199-316 43-151 (233)
52 KOG1644 U2-associated snRNP A' 97.3 0.00029 6.2E-09 61.3 4.6 108 221-350 41-149 (233)
53 KOG1909 Ran GTPase-activating 97.3 0.00024 5.3E-09 66.7 3.9 194 216-434 86-310 (382)
54 KOG2120 SCF ubiquitin ligase, 97.3 2.2E-05 4.7E-10 72.0 -3.1 166 246-435 185-376 (419)
55 KOG1909 Ran GTPase-activating 97.2 0.00011 2.5E-09 68.8 0.6 35 398-432 239-280 (382)
56 KOG2120 SCF ubiquitin ligase, 97.1 2.2E-05 4.8E-10 71.9 -4.2 190 199-426 186-391 (419)
57 KOG2982 Uncharacterized conser 97.1 0.00022 4.7E-09 65.6 1.7 86 219-317 68-158 (418)
58 KOG4579 Leucine-rich repeat (L 97.1 0.00016 3.5E-09 59.0 0.6 88 217-317 48-135 (177)
59 KOG3665 ZYG-1-like serine/thre 97.0 0.00064 1.4E-08 72.0 4.7 137 198-352 122-261 (699)
60 KOG2123 Uncharacterized conser 96.9 7.2E-05 1.6E-09 68.0 -2.9 83 221-317 18-100 (388)
61 KOG2739 Leucine-rich acidic nu 96.4 0.0022 4.8E-08 58.1 2.6 66 242-317 61-128 (260)
62 KOG4341 F-box protein containi 96.3 0.0005 1.1E-08 66.1 -1.9 37 304-351 293-330 (483)
63 PF00560 LRR_1: Leucine Rich R 96.2 0.00088 1.9E-08 36.5 -0.6 19 248-267 2-20 (22)
64 PF00560 LRR_1: Leucine Rich R 96.1 0.0033 7.1E-08 34.2 1.3 21 271-291 1-21 (22)
65 KOG2123 Uncharacterized conser 95.3 0.0017 3.6E-08 59.4 -2.7 80 198-282 19-100 (388)
66 COG5238 RNA1 Ran GTPase-activa 95.2 0.02 4.4E-07 52.4 3.8 87 221-317 29-132 (388)
67 PF13504 LRR_7: Leucine rich r 95.1 0.014 3E-07 29.5 1.5 16 271-286 2-17 (17)
68 KOG2739 Leucine-rich acidic nu 94.2 0.03 6.4E-07 51.0 2.3 106 198-316 43-154 (260)
69 PF13504 LRR_7: Leucine rich r 94.1 0.033 7.3E-07 28.1 1.4 17 246-263 1-17 (17)
70 smart00370 LRR Leucine-rich re 93.9 0.06 1.3E-06 30.4 2.4 21 269-289 1-21 (26)
71 smart00369 LRR_TYP Leucine-ric 93.9 0.06 1.3E-06 30.4 2.4 21 269-289 1-21 (26)
72 KOG3864 Uncharacterized conser 92.1 0.044 9.5E-07 48.1 0.0 42 398-439 149-193 (221)
73 KOG0473 Leucine-rich repeat pr 91.9 0.007 1.5E-07 54.0 -5.1 85 196-283 40-124 (326)
74 KOG4341 F-box protein containi 91.9 0.011 2.4E-07 57.2 -4.2 108 199-316 139-253 (483)
75 PF13306 LRR_5: Leucine rich r 90.4 0.86 1.9E-05 37.1 6.3 58 219-279 32-90 (129)
76 smart00369 LRR_TYP Leucine-ric 89.0 0.29 6.2E-06 27.6 1.6 21 245-266 1-21 (26)
77 smart00370 LRR Leucine-rich re 89.0 0.29 6.2E-06 27.6 1.6 21 245-266 1-21 (26)
78 KOG1947 Leucine rich repeat pr 88.1 0.24 5.3E-06 50.5 1.6 13 424-436 403-415 (482)
79 KOG0473 Leucine-rich repeat pr 87.3 0.069 1.5E-06 47.9 -2.5 88 216-317 36-123 (326)
80 PF13306 LRR_5: Leucine rich r 87.3 1.7 3.6E-05 35.3 5.9 85 216-315 6-91 (129)
81 COG5238 RNA1 Ran GTPase-activa 86.2 2.1 4.6E-05 39.6 6.2 121 216-351 86-224 (388)
82 PRK04841 transcriptional regul 84.5 6 0.00013 44.1 10.3 126 19-171 206-332 (903)
83 smart00364 LRR_BAC Leucine-ric 82.8 0.78 1.7E-05 25.9 1.2 18 270-287 2-19 (26)
84 KOG3864 Uncharacterized conser 82.0 0.31 6.7E-06 42.9 -0.9 42 399-440 124-169 (221)
85 smart00367 LRR_CC Leucine-rich 81.5 0.95 2.1E-05 25.5 1.3 19 421-439 1-19 (26)
86 KOG1947 Leucine rich repeat pr 77.1 1.4 3E-05 44.9 1.9 40 401-440 402-445 (482)
87 smart00365 LRR_SD22 Leucine-ri 76.6 2.2 4.8E-05 24.2 1.8 17 269-285 1-17 (26)
88 PF13516 LRR_6: Leucine Rich r 62.2 3.3 7.3E-05 22.6 0.5 13 305-317 2-14 (24)
89 smart00368 LRR_RI Leucine rich 56.7 8.7 0.00019 22.0 1.6 14 270-283 2-15 (28)
90 PRK00080 ruvB Holliday junctio 35.4 4.1E+02 0.0089 25.5 10.7 22 19-40 203-224 (328)
91 TIGR00635 ruvB Holliday juncti 33.9 4.1E+02 0.0088 25.0 10.3 22 19-40 182-203 (305)
92 PF02284 COX5A: Cytochrome c o 33.1 99 0.0021 24.3 4.5 56 5-60 35-91 (108)
93 PF14050 Nudc_N: N-terminal co 30.3 1E+02 0.0022 21.7 3.9 30 16-45 2-31 (62)
94 PF14162 YozD: YozD-like prote 27.0 70 0.0015 21.3 2.4 21 128-148 10-30 (57)
95 cd00923 Cyt_c_Oxidase_Va Cytoc 26.2 1.6E+02 0.0034 22.9 4.5 55 6-60 33-88 (103)
96 PF07725 LRR_3: Leucine Rich R 25.9 24 0.00053 18.6 0.1 17 272-288 2-18 (20)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-57 Score=480.33 Aligned_cols=430 Identities=38% Similarity=0.611 Sum_probs=354.1
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcC-CCCCCCCcccchhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRY-PSGFEGMGTRVFPLLKFS 79 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~-~~~~~~~~~~i~~~l~~s 79 (459)
||+++||..+....+.++++|++||++|+|+|||++++|+.|+.|++.++|+++.+.+.+. ..+.+.+.+.+.++|++|
T Consensus 325 LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklS 404 (889)
T KOG4658|consen 325 LFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLS 404 (889)
T ss_pred HHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhcc
Confidence 6899999886666777999999999999999999999999999999999999999999888 556666677999999999
Q ss_pred hcCCCchhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEee
Q 012641 80 YDRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKM 159 (459)
Q Consensus 80 y~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~ 159 (459)
||.||+ ++|.||+|||+||+||.|++++||.+|+||||+.+..+..++++.|++|+.+|+.++|++.....+...+|+|
T Consensus 405 yd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~km 483 (889)
T KOG4658|consen 405 YDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKM 483 (889)
T ss_pred HhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEe
Confidence 999997 7999999999999999999999999999999999976789999999999999999999998775456799999
Q ss_pred hHHHHHHHHHHHhccCCcc-eEEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeeccc--ccc
Q 012641 160 HDILRDMALWIASSQGASK-ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTM--IKE 236 (459)
Q Consensus 160 hdli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~ 236 (459)
||++|+||.++|.+.+.++ ..++..+.+....|....|..+|+++++++ .+..+ +....+++|++|.+..|. +..
T Consensus 484 HDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~-~~~~~-~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 484 HDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN-KIEHI-AGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred eHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc-chhhc-cCCCCCCccceEEEeecchhhhh
Confidence 9999999999999666544 566777677788888899999999999999 88888 666777899999999995 789
Q ss_pred cchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHh-------------hhhCCCCcCCC
Q 012641 237 FENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKN-------------LKAIPAGMLSS 303 (459)
Q Consensus 237 ~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-------------l~~lp~~~i~~ 303 (459)
++.+||..|+.||||||++|..+.++|.+|+.|.+||||+++++.++.||.++++| +..+|.. +..
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~ 640 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLE 640 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhh
Confidence 99999999999999999999899999999999999999999999999999999998 2344443 666
Q ss_pred CCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhcc--------
Q 012641 304 LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMG-------- 375 (459)
Q Consensus 304 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~-------- 375 (459)
|++||+|.+....... ......++.+|++|+.+.+...+...+..+..+.++.++.+.+.+.
T Consensus 641 L~~Lr~L~l~~s~~~~----------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~ 710 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSN----------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI 710 (889)
T ss_pred cccccEEEeecccccc----------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee
Confidence 9999999997765322 5667888999999999998765554445565666666666555541
Q ss_pred --CCCCCCccccCccccCC------ccCc---cc-ccCccEEEEecC-CCCCCcccccCCCcceeecccCcchhhhcccc
Q 012641 376 --LPELSSLIDISSSSLTT------MMKG---HF-SQNLQDLSIINC-SIKDLTCILYIPRLRFLFAKDCPSLEEIIAID 442 (459)
Q Consensus 376 --~~~l~~l~~~~l~~~~~------~i~~---~~-l~~L~~L~L~~~-~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~~~ 442 (459)
...+.+|+.+.+..+.. |... .. |+++..+.+.+| ....+.|..-.|+|+.|.+..|..+++++...
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH
Confidence 22233333333322211 1111 12 556777777777 77777776678999999999999999888754
Q ss_pred CC
Q 012641 443 LH 444 (459)
Q Consensus 443 ~~ 444 (459)
..
T Consensus 791 k~ 792 (889)
T KOG4658|consen 791 KA 792 (889)
T ss_pred HH
Confidence 44
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-38 Score=350.98 Aligned_cols=284 Identities=22% Similarity=0.277 Sum_probs=199.7
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSY 80 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy 80 (459)
||+++||++. .+++++++++++||++|+|+||||+++|++|++ ++.++|+.+++.+++... ++|..+|++||
T Consensus 359 LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SY 430 (1153)
T PLN03210 359 MFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSY 430 (1153)
T ss_pred HHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhh
Confidence 6899999876 556789999999999999999999999999998 789999999999887543 37999999999
Q ss_pred cCCCchhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeeh
Q 012641 81 DRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMH 160 (459)
Q Consensus 81 ~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~h 160 (459)
++|+++..|.||+|+|+||.++.+ +.+..|.|.+..... ..++.|++++|++.. .+.++||
T Consensus 431 d~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~~-----~~~~~MH 491 (1153)
T PLN03210 431 DGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN-----------IGLKNLVDKSLIHVR-----EDIVEMH 491 (1153)
T ss_pred hccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch-----------hChHHHHhcCCEEEc-----CCeEEhh
Confidence 999863499999999999998644 346677776544321 128899999999865 4579999
Q ss_pred HHHHHHHHHHHhccCCcc---eEEEecCCCccccc--------------------------cccccccceEEEeecCCCc
Q 012641 161 DILRDMALWIASSQGASK---ILVFQETDKSIKVQ--------------------------ETASWNEAVRVSLWRSPSI 211 (459)
Q Consensus 161 dli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------------~~~~~~~~r~l~l~~~~~~ 211 (459)
|++|+||+.++++++.+. .+++...+...... ......+++.+.+..+ ..
T Consensus 492 dLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~-~~ 570 (1153)
T PLN03210 492 SLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK-KW 570 (1153)
T ss_pred hHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc-cc
Confidence 999999999998764221 34443221100000 1122334444444332 11
Q ss_pred -------cccCCCCCCC-CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCC-CC
Q 012641 212 -------DSLSPTPPCC-PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT-NI 282 (459)
Q Consensus 212 -------~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~-~l 282 (459)
..+|..+..+ ++||.|.+.++.+..+|.. | .+.+|+.|++.++ .+..+|..+..+++|++|+++++ .+
T Consensus 571 ~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 571 DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred cccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCc
Confidence 1123333333 3577777777777777765 3 4678888888888 78888888888888888888876 46
Q ss_pred cccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 283 CELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 283 ~~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.+|. +..+ +..+|.. +++|++|+.|++.+|..
T Consensus 648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 648 KEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred CcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC
Confidence 66663 2221 4456665 66666666666666543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.76 E-value=1.1e-19 Score=173.65 Aligned_cols=121 Identities=35% Similarity=0.678 Sum_probs=98.7
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSY 80 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy 80 (459)
||++.++......++.+++++++|+++|+|+||||+++|++|+.+.+..+|+.+++.+........+....+..++.+||
T Consensus 165 L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~ 244 (287)
T PF00931_consen 165 LFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSY 244 (287)
T ss_dssp HHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceech
Confidence 46666665543445667889999999999999999999999977668899999999888876554445568999999999
Q ss_pred cCCCchhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCC
Q 012641 81 DRLTSETHKTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDS 122 (459)
Q Consensus 81 ~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~ 122 (459)
+.||+ ++|+||+|||+||+++.|+++.++++|+++|||...
T Consensus 245 ~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 245 DSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred hcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999 699999999999999999999999999999999875
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=8.9e-19 Score=163.36 Aligned_cols=97 Identities=29% Similarity=0.350 Sum_probs=87.1
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
+....+.+..+.++.| .+..+ |++.+|+.|..|.+..|.++.+|.+..+++.++.+|||+.| +++++|++++.|++|
T Consensus 201 ~lg~l~~L~~LyL~~N-ki~~l-Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRN-KIRFL-PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred hhcchhhhHHHHhhhc-ccccC-CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 4455667777888888 88888 58899999999999889899999997789999999999999 999999999999999
Q ss_pred CEEEcCCCCCcccCHHHHHh
Q 012641 273 QYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~L 292 (459)
.+||+|+|.|+.+|-++++|
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred hhhcccCCccccCCcccccc
Confidence 99999999999999998887
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=5.2e-18 Score=166.09 Aligned_cols=230 Identities=20% Similarity=0.247 Sum_probs=178.8
Q ss_pred ccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCC
Q 012641 192 QETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELID 271 (459)
Q Consensus 192 ~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~ 271 (459)
++...++.+..|.++.| .+.++|..+....++-+|++++|.+..||.+.|-++..|-+|||++| .+..+|+.+..|.+
T Consensus 97 ~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 34556678999999999 99999988889999999999999999999999999999999999999 99999999999999
Q ss_pred CCEEEcCCCCC-----cccCH--HHHHh--------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 272 LQYLNLSNTNI-----CELPI--GIKKN--------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 272 L~~L~l~~~~l-----~~lp~--~i~~L--------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
|++|+|++|++ .+||+ ++.-| +..+|.. +..|.||+.++++.|.+ ...|+-
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L-------------p~vPec 240 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL-------------PIVPEC 240 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC-------------CcchHH
Confidence 99999999964 46663 22222 7789998 99999999999998875 347888
Q ss_pred hhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccc-----------------cCccccCCccCc---
Q 012641 337 LESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLID-----------------ISSSSLTTMMKG--- 396 (459)
Q Consensus 337 l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~-----------------~~l~~~~~~i~~--- 396 (459)
+-++.+|+.|+++.+ .+.++........++++|.++-+.+..|++ +++++.|+-|..
T Consensus 241 ly~l~~LrrLNLS~N---~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN---KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HhhhhhhheeccCcC---ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 999999999999654 444444455566667777776666665544 233332332221
Q ss_pred ------------------ccccCccEEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 397 ------------------HFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 397 ------------------~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
..+..|+.|.|+.|.+..+|. +.-||-|++|+++..+++..-|.
T Consensus 318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 234577888888777777775 77788888888888888876665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=5.5e-18 Score=165.91 Aligned_cols=236 Identities=19% Similarity=0.209 Sum_probs=175.4
Q ss_pred eEEEecCCCcccccc-ccccccceEEEeecCCCccccCCCCCCCCcceeeeeeccccc--ccchhHHhcCCCccEEEccC
Q 012641 179 ILVFQETDKSIKVQE-TASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIK--EFENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~ 255 (459)
.++......+..+|+ .+.+.++.+|++.+| .+..+..+++.++.||++.+..|.+. .+|++ +..|..|.+|||++
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 456666667777774 345678888999988 88887788889999999999888654 68888 77899999999999
Q ss_pred CCCcccccccccCCCCCCEEEcCCCCCcccCHHHH-Hh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCC
Q 012641 256 NAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK-KN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNY 322 (459)
Q Consensus 256 ~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~-~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 322 (459)
| ++++.|..+..-+++-.|+||+|+|..+|..+. +| +..+|+. +.+|.+|++|.+++|.+
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL----- 185 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPL----- 185 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChh-----
Confidence 9 999999988888999999999999999997654 22 7788988 99999999999999887
Q ss_pred CCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccc----------cCcccc--
Q 012641 323 GSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLID----------ISSSSL-- 390 (459)
Q Consensus 323 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~----------~~l~~~-- 390 (459)
...-+..|.+|++|+.|.++.. .....+++.+..-..+|+.++++++.++.++. +++++.
T Consensus 186 -------~hfQLrQLPsmtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 186 -------NHFQLRQLPSMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred -------hHHHHhcCccchhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 3345566667777777777542 22344556666656667777777777655433 333321
Q ss_pred -CCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeeccc
Q 012641 391 -TTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKD 431 (459)
Q Consensus 391 -~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~ 431 (459)
.-.+....-.+|+.|+++.|+++.+|. ++.|+.|+.|++.+
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc
Confidence 000111234588888998888888886 88899998888876
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1e-14 Score=163.16 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccCccEEEEecC-CCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 398 FSQNLQDLSIINC-SIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 398 ~l~~L~~L~L~~~-~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.+++|+.|++++| +++.+|. +..+++|+.|++++|.+++.++-
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 4677778888777 7777775 66777777788888877776544
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=7.6e-15 Score=163.17 Aligned_cols=219 Identities=20% Similarity=0.162 Sum_probs=123.8
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCC
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQ 273 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~ 273 (459)
..+++++|.+.+| .+... .....+++|++|++++|.+. .+|.. ++.+++|++|++++| .+. .+|..++++++|+
T Consensus 116 ~l~~L~~L~Ls~n-~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNN-NFTGS-IPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCC-ccccc-cCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCC
Confidence 3456777777666 44332 12244667777777777654 34444 777777777777777 543 5677777777777
Q ss_pred EEEcCCCCCc-ccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc
Q 012641 274 YLNLSNTNIC-ELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 274 ~L~l~~~~l~-~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
+|++++|.+. .+|..++++ ...+|.. ++++++|++|++++|.. .+..+..+++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l------------~~~~p~~l~~ 258 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL------------TGPIPSSLGN 258 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee------------ccccChhHhC
Confidence 7777777654 556665554 1245555 67777777777777665 3445666777
Q ss_pred cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCC-----------CCccccCcccc--CCccCc--ccccCccE
Q 012641 340 LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPEL-----------SSLIDISSSSL--TTMMKG--HFSQNLQD 404 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l-----------~~l~~~~l~~~--~~~i~~--~~l~~L~~ 404 (459)
+++|+.|++..+.... .++........|+.|+++.+.+ ++|+.+++... .+.++. ..+++|+.
T Consensus 259 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 259 LKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CCCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 7777777775432211 1111112223455555533322 22222222221 111111 34667777
Q ss_pred EEEecCCCC-CCcc-cccCCCcceeecccCc
Q 012641 405 LSIINCSIK-DLTC-ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 405 L~L~~~~l~-~lp~-l~~l~~L~~L~l~~c~ 433 (459)
|++++|.+. .+|. ++.+++|+.|+++++.
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 777777433 4453 6667777777777643
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-16 Score=131.42 Aligned_cols=148 Identities=21% Similarity=0.288 Sum_probs=125.8
Q ss_pred ccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccccc
Q 012641 188 SIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEG 267 (459)
Q Consensus 188 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~ 267 (459)
..+++.....+.+.++.+++| .+..+|+.+..+.+|++|++++|.++.+|.+ +++|+.||.|+++.| .+..+|..+|
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 334455555678999999999 9999999999999999999999999999998 999999999999999 9999999999
Q ss_pred CCCCCCEEEcCCCCCc--ccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc
Q 012641 268 ELIDLQYLNLSNTNIC--ELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL 333 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~--~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 333 (459)
.++-|+.||+.+|++. .+|..+.-+ .+.+|.+ +++|++||.|.+..|... ..
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll-------------~l 165 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLL-------------SL 165 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchh-------------hC
Confidence 9999999999999765 778665544 5678888 888888888888887753 37
Q ss_pred hhhhhccccCceeEEEEeC
Q 012641 334 LEELESLKHLQEISVIILT 352 (459)
Q Consensus 334 ~~~l~~L~~L~~L~l~~~~ 352 (459)
+++++.|+.|++|.+..+.
T Consensus 166 pkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cHHHHHHHHHHHHhcccce
Confidence 8888888888888886543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=1.5e-16 Score=148.66 Aligned_cols=217 Identities=22% Similarity=0.267 Sum_probs=114.2
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
.+..+.+++| ...++|+.+..+..+..++.++|.+..+|+. ++++..|+.|+.++| .+.++|++|+.+..|..|+..
T Consensus 69 ~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcc
Confidence 3444555555 5555555555555555555555555555555 555555555555555 555555555555555555555
Q ss_pred CCCCcccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCcee
Q 012641 279 NTNICELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 346 (459)
Q Consensus 279 ~~~l~~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 346 (459)
+|++..+|.++..+ ++.+|+. .-+|+.|++|+...|-. ...|.+++.|.+|..|
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L-------------~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLL-------------ETLPPELGGLESLELL 211 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhh-------------hcCChhhcchhhhHHH
Confidence 55555555555444 4445544 33355555555544432 2355555555555555
Q ss_pred EEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc-----------ccCcccc-CCccCc--ccccCccEEEEecCCC
Q 012641 347 SVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI-----------DISSSSL-TTMMKG--HFSQNLQDLSIINCSI 412 (459)
Q Consensus 347 ~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~-----------~~~l~~~-~~~i~~--~~l~~L~~L~L~~~~l 412 (459)
++..++...+.+++... .|..++++.+.++-++ .+++... -...|+ -.+.+|++|++++|.+
T Consensus 212 yL~~Nki~~lPef~gcs----~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 212 YLRRNKIRFLPEFPGCS----LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HhhhcccccCCCCCccH----HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 55544433333332221 2333444333322221 1111110 011112 2366788888888888
Q ss_pred CCCcc-cccCCCcceeecccCcchhhh
Q 012641 413 KDLTC-ILYIPRLRFLFAKDCPSLEEI 438 (459)
Q Consensus 413 ~~lp~-l~~l~~L~~L~l~~c~~l~~i 438 (459)
..+|. +|++ .|+.|.+.|.+ ++.|
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNP-lrTi 312 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNP-LRTI 312 (565)
T ss_pred ccCCcccccc-eeeehhhcCCc-hHHH
Confidence 88886 8888 88888888843 4444
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.52 E-value=3.4e-14 Score=157.96 Aligned_cols=221 Identities=15% Similarity=0.140 Sum_probs=150.1
Q ss_pred ccccceEEEeecCCCcc-ccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCC
Q 012641 196 SWNEAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDL 272 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L 272 (459)
....++.|.+.+| .+. .+|..+..+++|++|++++|.+. .+|.. ++.+++|++|++++| .+. .+|..++.+++|
T Consensus 138 ~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 138 SIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLVGQIPRELGQMKSL 214 (968)
T ss_pred ccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCcCcCChHHcCcCCc
Confidence 3567888888888 554 56566778888888888888665 45554 888888888888888 554 568888888888
Q ss_pred CEEEcCCCCCc-ccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 273 QYLNLSNTNIC-ELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 273 ~~L~l~~~~l~-~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
++|++++|.+. .+|..++.+ ...+|.. ++++++|++|++++|.+ ....+..+.
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l------------~~~~p~~l~ 281 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL------------SGPIPPSIF 281 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee------------eccCchhHh
Confidence 88888888776 678777766 2356776 88999999999988876 445667778
Q ss_pred ccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC-----------CCCccccCcccc--CCccCc--ccccCcc
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE-----------LSSLIDISSSSL--TTMMKG--HFSQNLQ 403 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~-----------l~~l~~~~l~~~--~~~i~~--~~l~~L~ 403 (459)
++++|+.|+++.+.... .++........|+.|++..+. ++.|..+++... .+.+|. ..+++|+
T Consensus 282 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 282 SLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred hccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 88888888876443221 111111122345555553222 233333444331 111221 3578999
Q ss_pred EEEEecCCCC-CCc-ccccCCCcceeecccCcc
Q 012641 404 DLSIINCSIK-DLT-CILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 404 ~L~L~~~~l~-~lp-~l~~l~~L~~L~l~~c~~ 434 (459)
.|++++|.+. .+| .+..+++|+.|+++++.-
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 9999999543 455 478899999999987543
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.52 E-value=6.3e-15 Score=143.79 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=131.1
Q ss_pred cccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCE
Q 012641 197 WNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQY 274 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~ 274 (459)
...+|.+.++.| .+..++ +.+..-.+++.|++.+|.+..+-...|.++.+|-+|.|+.| .++.+|.. +.+|++|+.
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 344555555555 555554 44444456666666666666665555666667777777777 77777643 344777777
Q ss_pred EEcCCCCCccc-C------HHHHHh------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC----------CCC--Cc
Q 012641 275 LNLSNTNICEL-P------IGIKKN------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS----------SVP--GV 329 (459)
Q Consensus 275 L~l~~~~l~~l-p------~~i~~L------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~~~--~~ 329 (459)
|+|..|.|..+ . .++.++ +..+..+++..|.++++|++..|.+..+..|. +++ .-
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 77777765543 1 222222 55666666777777777777776654321110 000 00
Q ss_pred cccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC-----------CCCccccCcccc-CCc----
Q 012641 330 TVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE-----------LSSLIDISSSSL-TTM---- 393 (459)
Q Consensus 330 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~-----------l~~l~~~~l~~~-~~~---- 393 (459)
....+......+.|+.|+++.+....+++- ...-...|+.|.++-+. +++|..+++... -+|
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~--sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEG--SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChh--HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 122233334445555555554433322110 01112234444443333 333333444431 122
Q ss_pred --cCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhcc
Q 012641 394 --MKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 394 --i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.+...++.|++|.+.||+++.+|. +..|++|++|+|.+ +.+.+|-.
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~ 433 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD-NAIASIQP 433 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCC-Ccceeecc
Confidence 112347888889998888888884 78888999998887 55555544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=3.2e-14 Score=145.73 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=83.6
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
++++|.+.++ .+..+|..+..+++|+.|.++.|.+..+|.+ ..+|++|++|.|.+| .+..+|.++..+++|+||+++
T Consensus 46 ~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 3888999999 9999999999999999999999999999977 999999999999999 999999999999999999999
Q ss_pred CCCCcccCHHHHHh
Q 012641 279 NTNICELPIGIKKN 292 (459)
Q Consensus 279 ~~~l~~lp~~i~~L 292 (459)
+|.+..+|.-+..+
T Consensus 123 ~N~f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVL 136 (1081)
T ss_pred hhccCCCchhHHhh
Confidence 99999998666554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-14 Score=121.00 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=105.6
Q ss_pred ccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHH
Q 012641 211 IDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK 290 (459)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~ 290 (459)
+.++ +.+..++++..|.+++|.+..+|+. +..+.+|++|++++| +++.+|.+|+.|+.|+.|+++-|.+..+|.+
T Consensus 23 f~~~-~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprg-- 97 (264)
T KOG0617|consen 23 FEEL-PGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRG-- 97 (264)
T ss_pred Hhhc-ccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccc--
Confidence 4445 6777888999999999999999998 999999999999999 9999999999999999999999988777765
Q ss_pred HhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCC------------CCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 291 KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV------------PGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 291 ~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
++.+..|+.|++.+|...+-..+.++ .+.....+.++++|++||.|.++.++. -.
T Consensus 98 ----------fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl---l~ 164 (264)
T KOG0617|consen 98 ----------FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL---LS 164 (264)
T ss_pred ----------cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch---hh
Confidence 55566666666655554321111000 000233677788888888877764432 22
Q ss_pred hhcchhHHhhhhhhhccCCCCCCc
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSL 382 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l 382 (459)
++........|+.|++..+.++-+
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeec
Confidence 233333334455555554444433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=3.7e-12 Score=133.81 Aligned_cols=216 Identities=19% Similarity=0.163 Sum_probs=118.7
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC-
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA- 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~- 257 (459)
..+...+..+..+|... ..+++.|.+.+| .++.+|. .+++|++|++++|.+..+|.. .++|+.|++++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC---CCCCCcEEEecCCccCcccCc----ccccceeeccCCch
Confidence 44555566677766533 246788888888 8887753 247788888888877776642 2344455444440
Q ss_pred ------------------CcccccccccCCCCCCEEEcCCCCCcccCH---HHHHh------hhhCCCCcCCCCCCCCEe
Q 012641 258 ------------------KLSKLHVGEGELIDLQYLNLSNTNICELPI---GIKKN------LKAIPAGMLSSLLSLRVF 310 (459)
Q Consensus 258 ------------------~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~---~i~~L------l~~lp~~~i~~L~~L~~L 310 (459)
.++.+|. .+++|++|++++|.++.+|. .+..| +..+|.. ..+|+.|
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l----p~~Lq~L 347 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL----PSGLQEL 347 (788)
T ss_pred hhhhhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCcccccccc----ccccceE
Confidence 4444443 23567777887777776654 22222 4444431 1468888
Q ss_pred eecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc-------
Q 012641 311 SWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI------- 383 (459)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~------- 383 (459)
++++|.+...+. . ..+|+.|++..+....+..+ ...|+.|+++.+.+..++
T Consensus 348 dLS~N~Ls~LP~-------------l---p~~L~~L~Ls~N~L~~LP~l------~~~L~~LdLs~N~Lt~LP~l~s~L~ 405 (788)
T PRK15387 348 SVSDNQLASLPT-------------L---PSELYKLWAYNNRLTSLPAL------PSGLKELIVSGNRLTSLPVLPSELK 405 (788)
T ss_pred ecCCCccCCCCC-------------C---CcccceehhhccccccCccc------ccccceEEecCCcccCCCCcccCCC
Confidence 888887643211 0 12333333332222211111 123444444333333221
Q ss_pred ccCcccc-CCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCc
Q 012641 384 DISSSSL-TTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 384 ~~~l~~~-~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~ 433 (459)
.+++... -..+| ..+.+|+.|++++|.++.+|. ++.+++|+.|++++++
T Consensus 406 ~LdLS~N~LssIP-~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 406 ELMVSGNRLTSLP-MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEEccCCcCCCCC-cchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 1111110 01112 124578889999998888885 8889999999998844
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.35 E-value=8.8e-13 Score=129.01 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=138.0
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQY 274 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~ 274 (459)
.+.+++.+.+..| .+..+|.......+|+.|++.+|.+..+..+-+..++.||+|||+.| .|+.+|. ++..=.++++
T Consensus 100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 4467788888888 88888655555667888888888888777777888888888888888 8888864 3555578888
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
|+|++|.|+.+-.+ .+.+|.+|..|.++.|.+ +...+..+..|++|+.|++..+...
T Consensus 178 L~La~N~It~l~~~-----------~F~~lnsL~tlkLsrNri------------ttLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 178 LNLASNRITTLETG-----------HFDSLNSLLTLKLSRNRI------------TTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred Eeeccccccccccc-----------cccccchheeeecccCcc------------cccCHHHhhhcchhhhhhcccccee
Confidence 88888888876532 266666777777777765 3344556666777777776544322
Q ss_pred hhhhhhcchhHHhhhhhhhccCCCCCCcc-----------ccCccc------cCCccCcccccCccEEEEecCCCCCCcc
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPELSSLI-----------DISSSS------LTTMMKGHFSQNLQDLSIINCSIKDLTC 417 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~l~~l~-----------~~~l~~------~~~~i~~~~l~~L~~L~L~~~~l~~lp~ 417 (459)
..+.+. .+...+++.|.+.-+++..|. .++++. ..+|+-. +..|+.|+|+.|.+..+..
T Consensus 235 ive~lt--FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg--Lt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 235 IVEGLT--FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG--LTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred eehhhh--hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc--cchhhhhccchhhhheeec
Confidence 211110 011112333333222222222 122221 2456554 7888999999886555542
Q ss_pred --cccCCCcceeecccCcchhhhcc
Q 012641 418 --ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 418 --l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
-...++|++|+|+. +.+.+++.
T Consensus 311 d~WsftqkL~~LdLs~-N~i~~l~~ 334 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSS-NRITRLDE 334 (873)
T ss_pred chhhhcccceeEeccc-cccccCCh
Confidence 23467899999987 77887776
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=1.7e-13 Score=140.59 Aligned_cols=221 Identities=17% Similarity=0.144 Sum_probs=145.8
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
..+++.+.+..+ .+..+|.++..|.+|+.+...+|.+..+|.. +..+..|+.|+...| .+..+|...+.+++|++|+
T Consensus 240 p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee
Confidence 367889999999 9999988889999999999999999999988 888999999999999 9999999999999999999
Q ss_pred cCCCCCcccCHHHHHh--------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhcccc
Q 012641 277 LSNTNICELPIGIKKN--------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKH 342 (459)
Q Consensus 277 l~~~~l~~lp~~i~~L--------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 342 (459)
|..|++..+|..+-.. +..+|...=..+..|+.|++.+|.+ +.....-|.+..+
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L------------td~c~p~l~~~~h 384 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL------------TDSCFPVLVNFKH 384 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc------------cccchhhhccccc
Confidence 9999999999743321 2233321112334555555555555 3344455555566
Q ss_pred CceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCc--c--------c-cCCccC-cccccCccEEEEecC
Q 012641 343 LQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISS--S--------S-LTTMMK-GHFSQNLQDLSIINC 410 (459)
Q Consensus 343 L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l--~--------~-~~~~i~-~~~l~~L~~L~L~~~ 410 (459)
|+.|+++.+....+.+-. ......|+.|.++.+.++.|.+... . + .-...| ...++.|+.+|++.|
T Consensus 385 LKVLhLsyNrL~~fpas~--~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASK--LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeeeecccccccCCHHH--HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccc
Confidence 666666544333222210 1122234555555555555443100 0 0 000011 245789999999988
Q ss_pred CCCCCc--ccccCCCcceeecccCcc
Q 012641 411 SIKDLT--CILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 411 ~l~~lp--~l~~l~~L~~L~l~~c~~ 434 (459)
+++.+- ...--|+|++|+++|...
T Consensus 463 ~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 463 NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhhCCCcccceeeccCCcc
Confidence 666543 221127999999998664
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=2.5e-11 Score=128.21 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=73.2
Q ss_pred ecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 183 QETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
..+..+..+|... .+.++.|.+.+| .+..+|..+. ++|++|++++|.+..+|.. +. .+|+.|+|++| .+..+
T Consensus 185 L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N-~L~~L 256 (754)
T PRK15370 185 LKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN-RITEL 256 (754)
T ss_pred eCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChh-hh--ccccEEECcCC-ccCcC
Confidence 3444555555422 246777888877 7777754433 4788888887777777765 22 46778888888 77777
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
|..+. .+|++|++++|++..+|.. +. .+|+.|++++|.+.
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~------------l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPEN------------LP--EELRYLSVYDNSIR 296 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccc------------cC--CCCcEEECCCCccc
Confidence 77664 4678888887777766643 22 36777777776653
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=4.6e-11 Score=125.67 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=81.5
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSN 279 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~ 279 (459)
-..|.+..+ .+..+|+.+. ++|+.|.+.+|.+..+|. .+++|++|++++| .++.+|.. ..+|+.|++++
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446788888 8888876554 489999999999988885 3589999999999 99999864 46888999999
Q ss_pred CCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 280 TNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 280 ~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
|.+..+|.....| +..+|.. +.+|+.|++++|.+..
T Consensus 272 N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 272 NPLTHLPALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLAS 316 (788)
T ss_pred CchhhhhhchhhcCEEECcCCcccccccc----ccccceeECCCCcccc
Confidence 9888777544333 5556653 3679999999887754
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=5.1e-11 Score=125.86 Aligned_cols=208 Identities=19% Similarity=0.208 Sum_probs=142.8
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
+...+..+..+|... ..+++.|.+.+| .+..+|..+. ++|+.|++++|.+..+|.. +. ..|++|++++| .+.
T Consensus 204 L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N-~L~ 275 (754)
T PRK15370 204 LILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPER-LP--SALQSLDLFHN-KIS 275 (754)
T ss_pred EEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChh-Hh--CCCCEEECcCC-ccC
Confidence 334445566666433 258999999999 8988864443 5799999999999999887 33 58999999999 999
Q ss_pred cccccccCCCCCCEEEcCCCCCcccCHHH----HHh------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCcc
Q 012641 261 KLHVGEGELIDLQYLNLSNTNICELPIGI----KKN------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 330 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~~lp~~i----~~L------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 330 (459)
.+|..+. .+|++|++++|+++.+|..+ ..| +..+|.. + .++|+.|++.+|.+..
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~----------- 339 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTS----------- 339 (754)
T ss_pred ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcc-c--cccceeccccCCcccc-----------
Confidence 9998775 58999999999999887543 333 5566664 3 2578888888887632
Q ss_pred ccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecC
Q 012641 331 VLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC 410 (459)
Q Consensus 331 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~ 410 (459)
.+..+. ++|+.|+++.+.... ++. .+...|+.|+++.+.+..++ ......|+.|++++|
T Consensus 340 --LP~~l~--~sL~~L~Ls~N~L~~---LP~--~lp~~L~~LdLs~N~Lt~LP------------~~l~~sL~~LdLs~N 398 (754)
T PRK15370 340 --LPASLP--PELQVLDVSKNQITV---LPE--TLPPTITTLDVSRNALTNLP------------ENLPAALQIMQASRN 398 (754)
T ss_pred --CChhhc--CcccEEECCCCCCCc---CCh--hhcCCcCEEECCCCcCCCCC------------HhHHHHHHHHhhccC
Confidence 333332 578888886554332 222 12235677777666554431 122346888888888
Q ss_pred CCCCCcc-----cccCCCcceeecccCc
Q 012641 411 SIKDLTC-----ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 411 ~l~~lp~-----l~~l~~L~~L~l~~c~ 433 (459)
++..+|. .+.++++..|++.+.+
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7777763 3445778888887744
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=5.4e-11 Score=111.66 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=57.8
Q ss_pred cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCC-CCCcccCHHH-HHh-------
Q 012641 223 RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN-TNICELPIGI-KKN------- 292 (459)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~-~~l~~lp~~i-~~L------- 292 (459)
....+.++.|.+..+|+..|+.+++||.|||++| .|+.+ |+.+..|.+|..|-+-+ |+|+++|++. +.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3455666666677777776777777777777777 66666 66666666666665555 5666666432 122
Q ss_pred -----hhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 293 -----LKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 293 -----l~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..++.+++..|++|..|.+.+|..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 2333444466677777777766654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=9.9e-11 Score=109.94 Aligned_cols=237 Identities=16% Similarity=0.145 Sum_probs=160.9
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccC-C
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQ-N 256 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~-~ 256 (459)
..+.+.+.+++.+|..-. .+...|.+..| .++.+| ..+..+++||.|++++|.++.|.++.|.+++.|-.|-+.+ |
T Consensus 49 ~~VdCr~~GL~eVP~~LP-~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP-PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC-CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 445667778888875432 56788999999 999998 6678899999999999999999999999999998887776 6
Q ss_pred CCcccccc-cccCCCCCCEEEcCCCCCcccCHH-HHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCC---
Q 012641 257 AKLSKLHV-GEGELIDLQYLNLSNTNICELPIG-IKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAG--- 319 (459)
Q Consensus 257 ~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~--- 319 (459)
+|+.+|+ .++.|..|+.|.+--|.+..++.. +..| ++.++.+.+..+.+++++++..|....
T Consensus 127 -kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 -KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred -chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 9999985 468899999999988888766633 3333 677888668889999998887655211
Q ss_pred --c----------CC-C-----------------------------------CCCCCccccchhhhhccccCceeEEEEe
Q 012641 320 --F----------NY-G-----------------------------------SSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 320 --~----------~~-~-----------------------------------~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
| +. | .+.+. ......-+..|++|++|+++.+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d-~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD-SICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC-CcChHHHHhhcccceEeccCCC
Confidence 0 00 0 00111 1122344667888888888765
Q ss_pred ChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeec
Q 012641 352 TLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFA 429 (459)
Q Consensus 352 ~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l 429 (459)
....+.+-. ......++.|.+.-+.+...+.--+. .++.|+.|+|.+|+++.+.| +..+.+|..|.+
T Consensus 285 ~i~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~~f~---------~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 285 KITRIEDGA--FEGAAELQELYLTRNKLEFVSSGMFQ---------GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccchhhhhh--hcchhhhhhhhcCcchHHHHHHHhhh---------ccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 555443211 11223466666655555444322222 36677778888886666654 455666666666
Q ss_pred c
Q 012641 430 K 430 (459)
Q Consensus 430 ~ 430 (459)
-
T Consensus 354 ~ 354 (498)
T KOG4237|consen 354 L 354 (498)
T ss_pred c
Confidence 4
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.4e-11 Score=118.91 Aligned_cols=181 Identities=18% Similarity=0.170 Sum_probs=123.3
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHh---------
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKN--------- 292 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L--------- 292 (459)
.-....+++.|.+..+|.+ ++.|..|..+.|+.| .+..+|..+++|..|.||||+.|++..+|..++.|
T Consensus 75 tdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec
Confidence 3344556666666666666 666666666666666 66666666666666777777766666666666665
Q ss_pred --hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhh
Q 012641 293 --LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVR 370 (459)
Q Consensus 293 --l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~ 370 (459)
++.+|.+ ++.+..|.+|+.+.|.+ ...+..++.|.+|+.|.+..+....+ +.... .-.|.
T Consensus 153 Nkl~~lp~~-ig~~~tl~~ld~s~nei-------------~slpsql~~l~slr~l~vrRn~l~~l---p~El~-~LpLi 214 (722)
T KOG0532|consen 153 NKLTSLPEE-IGLLPTLAHLDVSKNEI-------------QSLPSQLGYLTSLRDLNVRRNHLEDL---PEELC-SLPLI 214 (722)
T ss_pred CccccCCcc-cccchhHHHhhhhhhhh-------------hhchHHhhhHHHHHHHHHhhhhhhhC---CHHHh-CCcee
Confidence 5667777 88888999999998885 34788899999999988864433322 22111 01256
Q ss_pred hhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc----cccCCCcceeecccC
Q 012641 371 RQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC----ILYIPRLRFLFAKDC 432 (459)
Q Consensus 371 ~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~----l~~l~~L~~L~l~~c 432 (459)
+|+++|+.+..++. . ...+..|++|-|.+|-+++.|. -|...=.++|++.-|
T Consensus 215 ~lDfScNkis~iPv--------~--fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCNKISYLPV--------D--FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccCceeecch--------h--hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 67778888766631 1 1347899999999999999884 255556688888777
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=4.8e-10 Score=97.21 Aligned_cols=128 Identities=26% Similarity=0.270 Sum_probs=47.5
Q ss_pred ccceEEEeecCCCccccCCCCC-CCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccc-cCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPP-CCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i-~~L~~L~~L 275 (459)
...+.|++.++ .+..+ ..+. .+.+|++|++++|.+..++. +..++.|++|++++| .|++++..+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccc-ccccc-cchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 35677888888 77777 4554 57788888888888777765 777888888888888 888776544 357888888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
++++|.|.++-. +-. +..+++|+.|++.+|.... ....-..-+..+++|+.|+-.
T Consensus 94 ~L~~N~I~~l~~--------l~~--L~~l~~L~~L~L~~NPv~~---------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNE--------LEP--LSSLPKLRVLSLEGNPVCE---------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCC--------CGG--GGG-TT--EEE-TT-GGGG---------STTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHH--------hHH--HHcCCCcceeeccCCcccc---------hhhHHHHHHHHcChhheeCCE
Confidence 888887766532 111 6677888888888877632 012233455567777777654
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=1.2e-09 Score=94.75 Aligned_cols=115 Identities=28% Similarity=0.300 Sum_probs=41.5
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHh-cCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQ-SMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIG 288 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~ 288 (459)
.+... +...++.+++.|++.+|.+..+.. ++ .+.+|++|++++| .|++++. +..+++|++|++++|.|+.++.+
T Consensus 8 ~i~~~-~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 8 MIEQI-AQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS---S--TT-----TT--EEE--SS---S-CHH
T ss_pred ccccc-cccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCCCCccccc
Confidence 34444 555666788999999998887754 55 6889999999999 9999964 88899999999999999988754
Q ss_pred HHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 289 IKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 289 i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
+ ...+++|++|++++|.+.. ...+..+..+++|+.|++..+
T Consensus 83 l-----------~~~lp~L~~L~L~~N~I~~-----------l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 83 L-----------DKNLPNLQELYLSNNKISD-----------LNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp H-----------HHH-TT--EEE-TTS---S-----------CCCCGGGGG-TT--EEE-TT-
T ss_pred h-----------HHhCCcCCEEECcCCcCCC-----------hHHhHHHHcCCCcceeeccCC
Confidence 3 2357899999999998742 334678888999999988643
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=8.6e-10 Score=118.49 Aligned_cols=104 Identities=23% Similarity=0.232 Sum_probs=79.3
Q ss_pred CccccccccccccceEEEeecCCC-ccccC-CCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCCCCccccc
Q 012641 187 KSIKVQETASWNEAVRVSLWRSPS-IDSLS-PTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQNAKLSKLH 263 (459)
Q Consensus 187 ~~~~~~~~~~~~~~r~l~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP 263 (459)
.....+......+++.|-+..+.. +..++ ..+..++.|++|++++| .+..+|.+ ++.+-+||||+++++ .+..+|
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP 611 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLP 611 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Cccccc
Confidence 333333333345688888888721 55554 33778999999999988 67789888 999999999999999 999999
Q ss_pred ccccCCCCCCEEEcCCCC-CcccCHHHHHh
Q 012641 264 VGEGELIDLQYLNLSNTN-ICELPIGIKKN 292 (459)
Q Consensus 264 ~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L 292 (459)
.++++|+.|.|||+..+. +..+|.....|
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhc
Confidence 999999999999999884 44444444434
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=2e-10 Score=112.50 Aligned_cols=132 Identities=23% Similarity=0.276 Sum_probs=88.7
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSN 279 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~ 279 (459)
+..+.+..| .+..+|..+.++..|.+|+++.|.+..+|.. ++. --|++|.+++| +++.+|..|+.+.+|..||.+.
T Consensus 100 Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~-lpLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCD-LPLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChh-hhc-CcceeEEEecC-ccccCCcccccchhHHHhhhhh
Confidence 444556666 6666666677777777777777777667665 333 34777777777 7777777777777777777777
Q ss_pred CCCcccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 280 TNICELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 280 ~~l~~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
|.+..+|+.++.| +..+|+. +.. -.|..||++.|++. ..|-.+.+|++|++|.
T Consensus 176 nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~-LpLi~lDfScNkis-------------~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCS-LPLIRLDFSCNKIS-------------YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhC-CceeeeecccCcee-------------ecchhhhhhhhheeee
Confidence 7777777776665 5566666 553 35667777766643 2566777777777777
Q ss_pred EEE
Q 012641 348 VII 350 (459)
Q Consensus 348 l~~ 350 (459)
+..
T Consensus 241 Len 243 (722)
T KOG0532|consen 241 LEN 243 (722)
T ss_pred ecc
Confidence 653
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=8.6e-09 Score=99.77 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=31.6
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCC---ccEEEccCCCCcc-----cccccccCC-CCCCEEEcCCCCCc
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHA---LRVLDSSQNAKLS-----KLHVGEGEL-IDLQYLNLSNTNIC 283 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---Lr~L~L~~~~~i~-----~lP~~i~~L-~~L~~L~l~~~~l~ 283 (459)
..+++|+.|++++|.+.......+..+.. |+.|++++| .+. .+...+..+ ++|+.|++++|.+.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 34556666666655444222222333333 666666655 443 122334444 55666666666554
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.3e-08 Score=72.49 Aligned_cols=60 Identities=32% Similarity=0.469 Sum_probs=46.3
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCC
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNI 282 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l 282 (459)
++|++|++.+|.+..+|++.|.++++|++|++++| .++.+| ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46778888888788888777888888888888888 777775 4567788888888887764
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.3e-09 Score=98.82 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=126.1
Q ss_pred cccceEEEeecCCCccccC--CCCCCCCcceeeeeecccccc--cchhHHhcCCCccEEEccCCCCccccccc--ccCCC
Q 012641 197 WNEAVRVSLWRSPSIDSLS--PTPPCCPRLLTLLVRYTMIKE--FENKFFQSMHALRVLDSSQNAKLSKLHVG--EGELI 270 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~--i~~L~ 270 (459)
.+++|.+++.+. .+...+ .....|++++.|+++.|-+.. .-..+...+++|+.|+|+.| .+.....+ -..+.
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhh
Confidence 467888999888 776664 356789999999999994432 22344778999999999999 66544332 24678
Q ss_pred CCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 271 DLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 271 ~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
+|+.|.+++|.+. ...+..++ ...++|..|++.+|.. .......-.-++.|+.|+++.
T Consensus 198 ~lK~L~l~~CGls--~k~V~~~~--------~~fPsl~~L~L~~N~~------------~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS--WKDVQWIL--------LTFPSLEVLYLEANEI------------ILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hhheEEeccCCCC--HHHHHHHH--------HhCCcHHHhhhhcccc------------cceecchhhhhhHHhhccccC
Confidence 9999999999887 55555533 3445677777777742 111222333466677777765
Q ss_pred eChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCC---CCCCcccccCCCccee
Q 012641 351 LTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCS---IKDLTCILYIPRLRFL 427 (459)
Q Consensus 351 ~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~---l~~lp~l~~l~~L~~L 427 (459)
+..-.+........ ...|+.|.+..+++.++...+.+.... ...+++|++|++..|+ +.++-.+..+++|+.|
T Consensus 256 N~li~~~~~~~~~~-l~~L~~Lnls~tgi~si~~~d~~s~~k---t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGT-LPGLNQLNLSSTGIASIAEPDVESLDK---THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred Cccccccccccccc-ccchhhhhccccCcchhcCCCccchhh---hcccccceeeecccCccccccccchhhccchhhhh
Confidence 43333222222111 122444555445554443322221100 1358899999999994 4444445567777777
Q ss_pred ecc
Q 012641 428 FAK 430 (459)
Q Consensus 428 ~l~ 430 (459)
.+.
T Consensus 332 ~~~ 334 (505)
T KOG3207|consen 332 RIT 334 (505)
T ss_pred hcc
Confidence 654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=2.7e-08 Score=99.41 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=26.4
Q ss_pred cccCccEEEEecCCCCCCcccccCCCcceeeccc
Q 012641 398 FSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431 (459)
Q Consensus 398 ~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~ 431 (459)
.+++++.|++++|.+.+++.++.+.+|+.|++++
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred cccccceeccccccccccccccccCccCEEeccC
Confidence 3667888888888777777777788888888877
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=1.4e-08 Score=98.22 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=86.5
Q ss_pred ccceEEEeecCCCcc-----ccCCCCCCCCcceeeeeecccccccc------hhHHhcCCCccEEEccCCCCcc-ccccc
Q 012641 198 NEAVRVSLWRSPSID-----SLSPTPPCCPRLLTLLVRYTMIKEFE------NKFFQSMHALRVLDSSQNAKLS-KLHVG 265 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~Lr~L~L~~~~~i~-~lP~~ 265 (459)
..++.+.+.++ .+. .++..+...++++.|.++++.+...+ ...+..+++|+.|++++| .+. ..+..
T Consensus 23 ~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGV 100 (319)
T ss_pred hhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHH
Confidence 34777777777 552 23345566778899998887554211 233777899999999999 665 34555
Q ss_pred ccCCCC---CCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCC-CCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccc
Q 012641 266 EGELID---LQYLNLSNTNICELPIGIKKNLKAIPAGMLSSL-LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK 341 (459)
Q Consensus 266 i~~L~~---L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 341 (459)
+..+.+ |++|++++|.+..- .... +... +..+ ++|+.|++.+|.+.. .........+..++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~--~~~~----l~~~-l~~~~~~L~~L~L~~n~l~~--------~~~~~~~~~~~~~~ 165 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDR--GLRL----LAKG-LKDLPPALEKLVLGRNRLEG--------ASCEALAKALRANR 165 (319)
T ss_pred HHHHhccCcccEEEeeCCccchH--HHHH----HHHH-HHhCCCCceEEEcCCCcCCc--------hHHHHHHHHHHhCC
Confidence 555555 99999999987631 1111 1112 4445 788888888887631 00112344566667
Q ss_pred cCceeEEEEeC
Q 012641 342 HLQEISVIILT 352 (459)
Q Consensus 342 ~L~~L~l~~~~ 352 (459)
+|+.|++..+.
T Consensus 166 ~L~~L~l~~n~ 176 (319)
T cd00116 166 DLKELNLANNG 176 (319)
T ss_pred CcCEEECcCCC
Confidence 78888776543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=2.3e-08 Score=91.06 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=79.7
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPA 298 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~ 298 (459)
..+..|.++++++|.+..+.++ +.-.+.+|+|++++| .+..+-. +..|.+|+.||+|+|.+.++-..
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gw---------- 347 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGW---------- 347 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhh----------
Confidence 3456677788888877777776 777788888888888 7766543 77777888888888876655322
Q ss_pred CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC
Q 012641 299 GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 299 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
-.+|-|.++|.+.+|.+. ....+++|-+|..|+++.+....+.+.....+ ..||+.+.+-.+.
T Consensus 348 --h~KLGNIKtL~La~N~iE--------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 --HLKLGNIKTLKLAQNKIE--------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNP 410 (490)
T ss_pred --HhhhcCEeeeehhhhhHh--------------hhhhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCC
Confidence 234455566666655431 34455555556666665554444443332222 2345555554444
Q ss_pred CC
Q 012641 379 LS 380 (459)
Q Consensus 379 l~ 380 (459)
+.
T Consensus 411 l~ 412 (490)
T KOG1259|consen 411 LA 412 (490)
T ss_pred cc
Confidence 43
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.4e-07 Score=65.93 Aligned_cols=59 Identities=32% Similarity=0.427 Sum_probs=52.4
Q ss_pred CCccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 246 HALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
++|++|++++| .++.+| ..+..+++|++|++++|.++.+|.+ .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-----------~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-----------AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETT-----------TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHH-----------HHcCCCCCCEEeCcCCc
Confidence 47999999999 999997 4678999999999999999887653 38999999999999986
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.4e-07 Score=90.31 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=129.6
Q ss_pred CCCCCCCcceeeeeecccccccch-hHHhcCCCccEEEccCCCCccc---ccccccCCCCCCEEEcCCCCCcccCHHHHH
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFEN-KFFQSMHALRVLDSSQNAKLSK---LHVGEGELIDLQYLNLSNTNICELPIGIKK 291 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~i~~---lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 291 (459)
..-+++.+|+...++++.+...+. +....|+++|.|||+.| -+.. +-+-+..|++|+.|+++.|.+....++..
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~- 192 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT- 192 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccc-
Confidence 445678899999999987766663 44788999999999998 5553 23445789999999999998764432210
Q ss_pred hhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhh
Q 012641 292 NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRR 371 (459)
Q Consensus 292 Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~ 371 (459)
-..+.+|+.|.++.|++++ .....-+...++|..|.+..++ .+..-....+....|+.
T Consensus 193 ---------~~~l~~lK~L~l~~CGls~-----------k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 193 ---------TLLLSHLKQLVLNSCGLSW-----------KDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQE 250 (505)
T ss_pred ---------hhhhhhhheEEeccCCCCH-----------HHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhh
Confidence 2357789999999998842 2233444567888888887553 22112223345556788
Q ss_pred hhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc--c------cccCCCcceeecccCcchhhhcc
Q 012641 372 QVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT--C------ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 372 L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp--~------l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|+++.+.+-.+..... ...|+.|+.|+++.|.+.++- . ...+|+|++|++.. +++.+++.
T Consensus 251 LdLs~N~li~~~~~~~--------~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~s 318 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYK--------VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRS 318 (505)
T ss_pred ccccCCcccccccccc--------cccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccc
Confidence 8887666655432222 145888999999988555442 2 25588999999987 55555444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=2.2e-07 Score=84.76 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=87.5
Q ss_pred CCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCC
Q 012641 246 HALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSS 325 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 325 (459)
+.|..+||++| .|+.+-.++.-++.++.|++|+|.|..+-. +..|.+|++|++++|...+
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-------------La~L~~L~~LDLS~N~Ls~------ 343 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-------------LAELPQLQLLDLSGNLLAE------ 343 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-------------hhhcccceEeecccchhHh------
Confidence 67888899999 888888888888899999999998876532 6778889999999887642
Q ss_pred CCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEE
Q 012641 326 VPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDL 405 (459)
Q Consensus 326 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L 405 (459)
...-- .+|-|.+.|.+. .+.++.+....++- +|..|++..+.++.++.++- .+.+|+|+.+
T Consensus 344 ----~~Gwh---~KLGNIKtL~La---~N~iE~LSGL~KLY-SLvnLDl~~N~Ie~ldeV~~--------IG~LPCLE~l 404 (490)
T KOG1259|consen 344 ----CVGWH---LKLGNIKTLKLA---QNKIETLSGLRKLY-SLVNLDLSSNQIEELDEVNH--------IGNLPCLETL 404 (490)
T ss_pred ----hhhhH---hhhcCEeeeehh---hhhHhhhhhhHhhh-hheeccccccchhhHHHhcc--------cccccHHHHH
Confidence 11112 245556666664 33444443333332 36666666666665543211 2458888888
Q ss_pred EEecCCCCCCc
Q 012641 406 SIINCSIKDLT 416 (459)
Q Consensus 406 ~L~~~~l~~lp 416 (459)
.|.+|.+..+|
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 88888555554
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=8.7e-07 Score=58.06 Aligned_cols=41 Identities=34% Similarity=0.435 Sum_probs=33.5
Q ss_pred CCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCH
Q 012641 246 HALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
++|++|++++| .|+.+|..+++|++|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46889999999 999998889999999999999998887753
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=2.3e-06 Score=90.11 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=51.6
Q ss_pred ceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCEEEcCCCCCc-ccCHHHHHhhhhCCCCc
Q 012641 224 LLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQYLNLSNTNIC-ELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 224 L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L~l~~~~l~-~lp~~i~~Ll~~lp~~~ 300 (459)
++.|++.+|.+. .+|.. ++.+++|+.|+|++| .+. .+|..++.+.+|++|+|++|.+. .+|..
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~------------ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES------------ 485 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchH------------
Confidence 566666666554 34444 667777777777777 554 56666777777777777777665 33432
Q ss_pred CCCCCCCCEeeecCCCC
Q 012641 301 LSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~ 317 (459)
+++|++|++|++++|.+
T Consensus 486 l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 486 LGQLTSLRILNLNGNSL 502 (623)
T ss_pred HhcCCCCCEEECcCCcc
Confidence 66667777777776665
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=3.2e-07 Score=92.13 Aligned_cols=123 Identities=28% Similarity=0.277 Sum_probs=80.9
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
.+..+.++.+ .+..+......+.+|+.|++.+|.+..+... +..+.+|++|++++| .|+++.. +..+..|+.|+++
T Consensus 73 ~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc-hhhccchhhheec
Confidence 3444445555 5554324466677788888888877766654 667788888888888 7777754 6677778888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh--hhccccCceeEEEEeC
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE--LESLKHLQEISVIILT 352 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~ 352 (459)
+|.|..++. +..+++|+.+++.+|.+.. ++. +..+.+|+.+.+..+.
T Consensus 149 ~N~i~~~~~-------------~~~l~~L~~l~l~~n~i~~--------------ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 149 GNLISDISG-------------LESLKSLKLLDLSYNRIVD--------------IENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCcchhccC-------------CccchhhhcccCCcchhhh--------------hhhhhhhhccchHHHhccCCc
Confidence 887776653 6667778888887776521 222 4566666666665443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.2e-06 Score=87.55 Aligned_cols=88 Identities=25% Similarity=0.290 Sum_probs=66.3
Q ss_pred ccceEEEeecCCCccccCCCCCCCC-cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCP-RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
+.+..+.+..+ .+.++++...... +|+.|++.+|.+..+|.. +..++.|+.|++++| .+..+|...+.+..|+.|+
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 46777777777 7777765555553 788888888877777644 777888888888888 8888877777778888888
Q ss_pred cCCCCCcccCHH
Q 012641 277 LSNTNICELPIG 288 (459)
Q Consensus 277 l~~~~l~~lp~~ 288 (459)
+++|.+..+|..
T Consensus 193 ls~N~i~~l~~~ 204 (394)
T COG4886 193 LSGNKISDLPPE 204 (394)
T ss_pred ccCCccccCchh
Confidence 888887777765
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=4.6e-06 Score=87.89 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=85.2
Q ss_pred cceEEEeecCCCcc-ccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCEE
Q 012641 199 EAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQYL 275 (459)
Q Consensus 199 ~~r~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L 275 (459)
.++.|.+.++ .+. .+|..+..+++|+.|++++|.+. .+|.. ++.+++|++|+|++| .+. .+|..++.|++|++|
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEE
Confidence 3677888888 554 57777889999999999999886 66666 999999999999999 776 789999999999999
Q ss_pred EcCCCCCc-ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 276 NLSNTNIC-ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 276 ~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
++++|.+. .+|..++. .+.++..+++.+|..
T Consensus 496 ~Ls~N~l~g~iP~~l~~-----------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGNSLSGRVPAALGG-----------RLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCCcccccCChHHhh-----------ccccCceEEecCCcc
Confidence 99999877 67765422 134567788877754
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=1.3e-06 Score=87.88 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=89.0
Q ss_pred cccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCC
Q 012641 195 ASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQ 273 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~ 273 (459)
...+++..+.+.++ .+..+ .. +..+++|++|++++|.+..+.. +..+..|+.|++.+| .|..++. +..+..|+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG-LESLKSLK 165 (414)
T ss_pred ccccceeeeecccc-chhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC-Cccchhhh
Confidence 34478899999999 99998 55 8889999999999999988877 888999999999999 9988765 66699999
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.+++++|.+..++.. . ...+.+|+.+++.+|.+
T Consensus 166 ~l~l~~n~i~~ie~~----------~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEND----------E-LSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhh----------h-hhhccchHHHhccCCch
Confidence 999999998877541 0 25678888888888765
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=1.9e-06 Score=69.93 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=78.1
Q ss_pred ccceEEEeecCCCccccCCCC-CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTP-PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
.++..+++++| .++++|+.+ ..++.+++|++.+|.+..+|.+ +..|+.||-|+++.| .+...|.-|..|++|-+|+
T Consensus 53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 36778899999 999998555 4567899999999999999999 999999999999999 9999999999999999999
Q ss_pred cCCCCCcccCHH
Q 012641 277 LSNTNICELPIG 288 (459)
Q Consensus 277 l~~~~l~~lp~~ 288 (459)
..+|.+.++|-.
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 999998888865
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1.6e-05 Score=83.98 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=48.4
Q ss_pred cCCCccEEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcC
Q 012641 244 SMHALRVLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFN 321 (459)
Q Consensus 244 ~l~~Lr~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 321 (459)
-|+.|+.|.+++- .+. .+-.-..++++|+.||+|+|+++.+. + +++|++|++|.+.+-.+.
T Consensus 146 ~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~------------G-IS~LknLq~L~mrnLe~e--- 208 (699)
T KOG3665|consen 146 MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLS------------G-ISRLKNLQVLSMRNLEFE--- 208 (699)
T ss_pred hCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcH------------H-HhccccHHHHhccCCCCC---
Confidence 4566666666553 221 11122345666777777777766652 2 677777777777665442
Q ss_pred CCCCCCCccccchhhhhccccCceeEEEE
Q 012641 322 YGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
....+.+|-+|++|+.|+++.
T Consensus 209 --------~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 209 --------SYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred --------chhhHHHHhcccCCCeeeccc
Confidence 234566777777777777764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=4.6e-07 Score=91.80 Aligned_cols=128 Identities=23% Similarity=0.175 Sum_probs=91.8
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
.|..+..+++..| .+..+...+.-++.|+.|++++|.+.... ++..+.+|+.|||++| .+..+|.--.---+|+.|
T Consensus 162 ~Wn~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheee
Confidence 3556666777777 66555344455678888888888777765 3888888888888888 888887521111248888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
++++|.+++|- + |.+|++|+.|++++|-+. ...-+.-|+.|..|+.|.+..+
T Consensus 238 ~lrnN~l~tL~------------g-ie~LksL~~LDlsyNll~-----------~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 238 NLRNNALTTLR------------G-IENLKSLYGLDLSYNLLS-----------EHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eecccHHHhhh------------h-HHhhhhhhccchhHhhhh-----------cchhhhHHHHHHHHHHHhhcCC
Confidence 88888877763 2 888999999999988764 2334566777888888887643
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.8e-05 Score=50.85 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=34.9
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV 264 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~ 264 (459)
++|++|++++|.+..+|+. ++.|++|++|++++| .++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCcC
Confidence 4789999999999999987 899999999999999 8887764
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=2.9e-05 Score=75.81 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=75.3
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
+.+.++|.++.+ .+..+| .+ .++|++|.+.+| .+..+|.. + ..+|++|++++|..+..+|. +|++|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceE
Confidence 467889999998 888884 22 246999999887 66677754 3 25899999999877888886 46677
Q ss_pred EcCCCC---CcccCHHHHHh-hhh----CCCCcCC-CC-CCCCEeeecCCCC
Q 012641 276 NLSNTN---ICELPIGIKKN-LKA----IPAGMLS-SL-LSLRVFSWVPTRY 317 (459)
Q Consensus 276 ~l~~~~---l~~lp~~i~~L-l~~----lp~~~i~-~L-~~L~~L~l~~~~~ 317 (459)
+++++. +..+|.++..| +.. .+.. +. .| .+|++|.+.+|..
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~-lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQAR-IDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccc-cccccCCcccEEEecCCCc
Confidence 777654 67889888876 210 1111 11 12 4789999988775
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=8.4e-06 Score=82.94 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=93.9
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
.-.|.+.++++|.+..++.+ +.-+++|+.|||++| ++.+.- .+-.+.+|++|||++|.+..+|. +-
T Consensus 163 Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~--------l~--- 228 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQ--------LS--- 228 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccc--------cc---
Confidence 34577777778888777776 888999999999999 888775 68889999999999999887764 11
Q ss_pred CCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC
Q 012641 301 LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
...+ +|+.|.+.+|... .+.++.+|++|+.|+++.+-.....++.....+ ..|+.|.+..+.
T Consensus 229 ~~gc-~L~~L~lrnN~l~--------------tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 229 MVGC-KLQLLNLRNNALT--------------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNP 290 (1096)
T ss_pred hhhh-hheeeeecccHHH--------------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCc
Confidence 1222 4999999988653 567888999999999986655555444443332 346777774444
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=2e-05 Score=72.25 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=28.1
Q ss_pred cccCccEEEEecC---CCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 398 FSQNLQDLSIINC---SIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 398 ~l~~L~~L~L~~~---~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.++.+..|+|..+ .|.++..+..+|.|..|.+.+.+-...+-.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 4666667777777 444555677788888888877655544433
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00043 Score=67.82 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=38.2
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCC-CCcccC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT-NICELP 286 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~-~l~~lp 286 (459)
..+.+++.|++++|.+..+|. + -.+|+.|.+++|..++.+|..+. .+|++|++++| .+..+|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 345667777777776666662 2 23577777776656666665442 46777777776 454444
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00019 Score=62.41 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=65.0
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc--ccccCCCCCCEEE
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH--VGEGELIDLQYLN 276 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L~ 276 (459)
....+.+.+| .+..+ ..+..++.|.+|.+.+|.+..+.+..-..+++|.+|.|.+| .|..+- ..+..++.|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 3444566666 66666 66677777777777777777777664455566777777777 666552 2234456677777
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
+-+|+++.... -...++.++++|++|++.+..
T Consensus 120 ll~Npv~~k~~--------YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKN--------YRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccC--------ceeEEEEecCcceEeehhhhh
Confidence 77776554321 111236666777777766543
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00029 Score=61.30 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccC-CCCCCEEEcCCCCCcccCHHHHHhhhhCCCC
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGE-LIDLQYLNLSNTNICELPIGIKKNLKAIPAG 299 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~-L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~ 299 (459)
..+...+++.+|.+..++. |.++..|.+|.|++| .|+.+-..++. +++|..|.+.+|+|.++-+ +-+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d--------l~p- 108 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGD--------LDP- 108 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhh--------cch-
Confidence 3466789999998888876 899999999999999 99999555654 6689999999999887632 333
Q ss_pred cCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 300 MLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 300 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
+..+++|+.|.+-+|.... ....-.--+..+++|+.|+...
T Consensus 109 -La~~p~L~~Ltll~Npv~~---------k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 -LASCPKLEYLTLLGNPVEH---------KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -hccCCccceeeecCCchhc---------ccCceeEEEEecCcceEeehhh
Confidence 6778899999999987632 1223344567789999998864
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.28 E-value=0.00024 Score=66.68 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=115.6
Q ss_pred CCCCCCCcceeeeeeccccc--ccc--hhHHhcCCCccEEEccCCCCcccc--------------cccccCCCCCCEEEc
Q 012641 216 PTPPCCPRLLTLLVRYTMIK--EFE--NKFFQSMHALRVLDSSQNAKLSKL--------------HVGEGELIDLQYLNL 277 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~--~~~--~~~~~~l~~Lr~L~L~~~~~i~~l--------------P~~i~~L~~L~~L~l 277 (459)
+.+..+++|++|+|+.|.+. .++ .+++.++..|+.|.|.+| .+... -+.++.-..||++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 45567789999999998443 222 344778889999999998 66532 234566788999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
..|.+..-+..- +-.. +...+.|+.+.+..|.+.. .+ .......+..+++|+.|++..+-...-.
T Consensus 165 ~rNrlen~ga~~------~A~~-~~~~~~leevr~~qN~I~~-------eG-~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 165 GRNRLENGGATA------LAEA-FQSHPTLEEVRLSQNGIRP-------EG-VTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred eccccccccHHH------HHHH-HHhccccceEEEecccccC-------ch-hHHHHHHHHhCCcceeeecccchhhhHH
Confidence 999887665421 1111 5555788888888887632 01 1234578889999999999754322111
Q ss_pred h--hhcchhHHhhhhhhhccCCCCCCccccCccccCCc--cC---cccccCccEEEEecCCCCC-----Cc-ccccCCCc
Q 012641 358 K--LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTM--MK---GHFSQNLQDLSIINCSIKD-----LT-CILYIPRL 424 (459)
Q Consensus 358 ~--l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~--i~---~~~l~~L~~L~L~~~~l~~-----lp-~l~~l~~L 424 (459)
. +.....-.++|+.+.++. ..++.. +. +. ....|+|+.|.+.+|..+. +. ++...|.|
T Consensus 230 s~~LakaL~s~~~L~El~l~d--------cll~~~-Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGD--------CLLENE-GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred HHHHHHHhcccchheeecccc--------cccccc-cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 1 111111111233332211 111110 00 00 1347899999999993332 11 35668999
Q ss_pred ceeecccCcc
Q 012641 425 RFLFAKDCPS 434 (459)
Q Consensus 425 ~~L~l~~c~~ 434 (459)
..|+|++|.-
T Consensus 301 ~kLnLngN~l 310 (382)
T KOG1909|consen 301 EKLNLNGNRL 310 (382)
T ss_pred HHhcCCcccc
Confidence 9999998653
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=2.2e-05 Score=72.01 Aligned_cols=166 Identities=20% Similarity=0.143 Sum_probs=92.8
Q ss_pred CCccEEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 246 HALRVLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
..|++|||+.. .|+ ++-.-+....+|+.|.+.|+.+.+= |. .. |.+-.+|+.|+++.|....
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~---I~-------~~-iAkN~~L~~lnlsm~sG~t---- 248 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDP---IV-------NT-IAKNSNLVRLNLSMCSGFT---- 248 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcH---HH-------HH-Hhccccceeeccccccccc----
Confidence 46899999988 665 3334456677888888888876521 11 12 6677899999999886422
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhh--hhhhhcchhHHhhhhhhhc-----------------cCCCCCCccc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDS--LNKLKSSSKLQSCVRRQVM-----------------GLPELSSLID 384 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~l~~~~~l~~~L~~L~l-----------------~~~~l~~l~~ 384 (459)
....---+.+++.|+.|+++|+.... +..+. ......+..|.+ .|..+.+|+.
T Consensus 249 ------~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 249 ------ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred ------hhHHHHHHHhhhhHhhcCchHhhccchhhhHHH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 23334456789999999998864331 11110 011112222222 2333332221
Q ss_pred cCcccc-CCccC-cccccCccEEEEecC-CCC--CCcccccCCCcceeecccCcch
Q 012641 385 ISSSSL-TTMMK-GHFSQNLQDLSIINC-SIK--DLTCILYIPRLRFLFAKDCPSL 435 (459)
Q Consensus 385 ~~l~~~-~~~i~-~~~l~~L~~L~L~~~-~l~--~lp~l~~l~~L~~L~l~~c~~l 435 (459)
.+.... ++.+. ...|+.|++|.++.| .+. .+-.+...|.|.+|++.||-.=
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 111100 11111 134778888888877 321 1113567788888888876543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.17 E-value=0.00011 Score=68.83 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=22.8
Q ss_pred cccCccEEEEecCCCCCCc------c-cccCCCcceeecccC
Q 012641 398 FSQNLQDLSIINCSIKDLT------C-ILYIPRLRFLFAKDC 432 (459)
Q Consensus 398 ~l~~L~~L~L~~~~l~~lp------~-l~~l~~L~~L~l~~c 432 (459)
.+++|+.|++++|.++.=- . -...|+|++|.+.+|
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 3567888888888555421 1 234788888888773
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=2.2e-05 Score=71.94 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=95.2
Q ss_pred cceEEEeecCCCcccc--CCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCccccc--ccccCCCCCC
Q 012641 199 EAVRVSLWRSPSIDSL--SPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLSKLH--VGEGELIDLQ 273 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~ 273 (459)
.++++.+++. .++.- -..+++|++|+.|.+.++.+. .+... +..-.+|+.|+++.++.+++.- --+..+..|.
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3566666655 44421 133456777777777776543 23223 5556677777777776665432 1235566777
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh-hccccCceeEEEEeC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL-ESLKHLQEISVIILT 352 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~ 352 (459)
.|+++.|.+.. |. +.-.+.++. .+|..|+++|+...= ....+..| ..+++|..|+++.+.
T Consensus 264 ~LNlsWc~l~~-~~-Vtv~V~his-------e~l~~LNlsG~rrnl----------~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 264 ELNLSWCFLFT-EK-VTVAVAHIS-------ETLTQLNLSGYRRNL----------QKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hcCchHhhccc-hh-hhHHHhhhc-------hhhhhhhhhhhHhhh----------hhhHHHHHHHhCCceeeecccccc
Confidence 77777765431 00 111122222 155666666654210 11122222 246777777776421
Q ss_pred h---hhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCc-----cCcccccCccEEEEecC-CCCCCcc-cccCC
Q 012641 353 L---DSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTM-----MKGHFSQNLQDLSIINC-SIKDLTC-ILYIP 422 (459)
Q Consensus 353 ~---~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~-----i~~~~l~~L~~L~L~~~-~l~~lp~-l~~l~ 422 (459)
. .-+.++ ..+..|+.+++..+-.. +.....|.|.+|++-+| .-+.+.. ...+|
T Consensus 325 ~l~~~~~~~~-----------------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~ 387 (419)
T KOG2120|consen 325 MLKNDCFQEF-----------------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLS 387 (419)
T ss_pred ccCchHHHHH-----------------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCc
Confidence 1 111111 11222222333332111 12245789999999999 5555543 45577
Q ss_pred Ccce
Q 012641 423 RLRF 426 (459)
Q Consensus 423 ~L~~ 426 (459)
+|+.
T Consensus 388 ~lki 391 (419)
T KOG2120|consen 388 HLKI 391 (419)
T ss_pred cccc
Confidence 7764
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00022 Score=65.61 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCCCcceeeeeecccccccch--hHHhcCCCccEEEccCCCCcccccccc-cCCCCCCEEEcCCCCCc--ccCHHHHHhh
Q 012641 219 PCCPRLLTLLVRYTMIKEFEN--KFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNTNIC--ELPIGIKKNL 293 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~i~~lP~~i-~~L~~L~~L~l~~~~l~--~lp~~i~~Ll 293 (459)
..++.++.+++.+|.+....+ .+..+|++|++|+++.| .+.+--++. -.+++|++|-|.|+.+. ...+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~----- 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS----- 141 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhh-----
Confidence 446778888888886543322 33667888888888888 444321222 24568888888887543 22221
Q ss_pred hhCCCCcCCCCCCCCEeeecCCCC
Q 012641 294 KAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 294 ~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..++.+++|+++.|++
T Consensus 142 -------l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 142 -------LDDLPKVTELHMSDNSL 158 (418)
T ss_pred -------hhcchhhhhhhhccchh
Confidence 55566666666666643
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=0.00016 Score=58.96 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhC
Q 012641 217 TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296 (459)
Q Consensus 217 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~l 296 (459)
.......|....+++|.++.+|+.+...++.+..|+|.+| .+..+|.++..++.|+.|+++.|++...|.-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~v-------- 118 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRV-------- 118 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHH--------
Confidence 3455667888999999999999998888889999999999 9999999999999999999999999988875
Q ss_pred CCCcCCCCCCCCEeeecCCCC
Q 012641 297 PAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 297 p~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..|.+|-.|+..++..
T Consensus 119 ----i~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 119 ----IAPLIKLDMLDSPENAR 135 (177)
T ss_pred ----HHHHHhHHHhcCCCCcc
Confidence 34466777777666654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00064 Score=71.97 Aligned_cols=137 Identities=20% Similarity=0.152 Sum_probs=79.5
Q ss_pred ccceEEEeecCCCcccc-C-CCCCCCCcceeeeeeccccccc-chhHHhcCCCccEEEccCCCCcccccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSIDSL-S-PTPPCCPRLLTLLVRYTMIKEF-ENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 274 (459)
.++++|.+.+...+..- + .....+|.|++|.+.+-.+..- -.....++++|+.||++++ +++.+ ..|++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 45666666554222110 0 1123478888888877543211 1223567888888888888 88877 66888888888
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
|.+.+=.+..-+. +. + +-+|++|++||++.......+ .-...-.+--..|++||.|+++..+
T Consensus 200 L~mrnLe~e~~~~-l~--------~-LF~L~~L~vLDIS~~~~~~~~------~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQD-LI--------D-LFNLKKLRVLDISRDKNNDDT------KIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhh-HH--------H-HhcccCCCeeeccccccccch------HHHHHHHHhcccCccccEEecCCcc
Confidence 8887755543221 11 1 677888888888876542200 0000011122247788888887543
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=7.2e-05 Score=68.05 Aligned_cols=83 Identities=24% Similarity=0.159 Sum_probs=61.6
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
+.+.+.|++.+|.+..|.- ...|+.|+||.|+-| +|++|-. +...++|+.|+|+.|.|..+-+ +.-
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldE-L~Y--------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDE-LEY--------- 83 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHH-HHH---------
Confidence 4556677777777666643 778889999999988 8888743 7778888888998888776532 222
Q ss_pred CCCCCCCCEeeecCCCC
Q 012641 301 LSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~ 317 (459)
+.+|++|+.|.+..|.-
T Consensus 84 LknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPC 100 (388)
T ss_pred HhcCchhhhHhhccCCc
Confidence 67888999999988754
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.0022 Score=58.13 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=39.1
Q ss_pred HhcCCCccEEEccCC--CCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 242 FQSMHALRVLDSSQN--AKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 242 ~~~l~~Lr~L~L~~~--~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..|++|+.|+++.| .-...++...-.+++|++|++++|+|+.+ +++++ +..+.+|..|+++.|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--------stl~p--l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--------STLRP--LKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--------cccch--hhhhcchhhhhcccCCc
Confidence 445566666666666 22223333344457777777777766642 12333 66777777788777764
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.33 E-value=0.0005 Score=66.09 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=21.7
Q ss_pred CCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh-ccccCceeEEEEe
Q 012641 304 LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE-SLKHLQEISVIIL 351 (459)
Q Consensus 304 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~ 351 (459)
+..||.|+.++|... +...+..|+ +..+|+.|.+...
T Consensus 293 c~~lq~l~~s~~t~~-----------~d~~l~aLg~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDI-----------TDEVLWALGQHCHNLQVLELSGC 330 (483)
T ss_pred hhHhhhhcccCCCCC-----------chHHHHHHhcCCCceEEEecccc
Confidence 445666666655431 344555665 4577888877643
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.00088 Score=36.54 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.2
Q ss_pred ccEEEccCCCCccccccccc
Q 012641 248 LRVLDSSQNAKLSKLHVGEG 267 (459)
Q Consensus 248 Lr~L~L~~~~~i~~lP~~i~ 267 (459)
|++||+++| .++.+|.+++
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 455555555 5555555444
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0033 Score=34.24 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=15.5
Q ss_pred CCCEEEcCCCCCcccCHHHHH
Q 012641 271 DLQYLNLSNTNICELPIGIKK 291 (459)
Q Consensus 271 ~L~~L~l~~~~l~~lp~~i~~ 291 (459)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888887776543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.0017 Score=59.42 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=62.7
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc--ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH--VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP--~~i~~L~~L~~L 275 (459)
..++.|..+++ .+.++ .....++.|++|.|+-|.+..+.+ +..|+.|+.|+|..| .|..+- .-+.+|++|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 56778888888 88887 666778888888888888877766 888888888888888 777663 335677888888
Q ss_pred EcCCCCC
Q 012641 276 NLSNTNI 282 (459)
Q Consensus 276 ~l~~~~l 282 (459)
=|..|+.
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 8877754
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.22 E-value=0.02 Score=52.37 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=47.4
Q ss_pred CCcceeeeeeccccc-----ccchhHHhcCCCccEEEccCCCCcc----cccc-------cccCCCCCCEEEcCCCCCc-
Q 012641 221 CPRLLTLLVRYTMIK-----EFENKFFQSMHALRVLDSSQNAKLS----KLHV-------GEGELIDLQYLNLSNTNIC- 283 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~----~lP~-------~i~~L~~L~~L~l~~~~l~- 283 (459)
+..+..+++++|.+. .+... +.+-++|++-+++.- ... .+|+ .+-++++|+..+||.|.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~-ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNV-IANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHH-HhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 445555666666432 22222 445566666666543 211 2222 2445677777777777544
Q ss_pred ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 284 ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 284 ~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.|+.++.+ |++-+.|.||.+++|..
T Consensus 107 ~~~e~L~d~--------is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDL--------ISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHH--------HhcCCCceeEEeecCCC
Confidence 444443331 66667777777777765
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.15 E-value=0.014 Score=29.49 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=6.7
Q ss_pred CCCEEEcCCCCCcccC
Q 012641 271 DLQYLNLSNTNICELP 286 (459)
Q Consensus 271 ~L~~L~l~~~~l~~lp 286 (459)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.25 E-value=0.03 Score=51.01 Aligned_cols=106 Identities=23% Similarity=0.202 Sum_probs=71.6
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecc--ccc-ccchhHHhcCCCccEEEccCCCCccccccc---ccCCCC
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYT--MIK-EFENKFFQSMHALRVLDSSQNAKLSKLHVG---EGELID 271 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~---i~~L~~ 271 (459)
..+..+++.+. .+..+ ..+..+++|+.|.++.| ++. .++.- ...+++|++|++++| +|+. +++ ...+.+
T Consensus 43 ~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKD-LSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-cccc-ccccchhhhhcc
Confidence 45666776666 66666 77888999999999998 332 33333 556699999999999 7764 222 566788
Q ss_pred CCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 272 LQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 272 L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
|..|++..|....+-.-=. .++.-|++|+.|+.....
T Consensus 118 L~~Ldl~n~~~~~l~dyre--------~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYRE--------KVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHH--------HHHHHhhhhccccccccC
Confidence 8899999886655421100 014556677777765543
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.12 E-value=0.033 Score=28.08 Aligned_cols=17 Identities=47% Similarity=0.624 Sum_probs=10.1
Q ss_pred CCccEEEccCCCCccccc
Q 012641 246 HALRVLDSSQNAKLSKLH 263 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~~lP 263 (459)
++|++|++++| .++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 36888888888 777776
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.92 E-value=0.06 Score=30.45 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=16.5
Q ss_pred CCCCCEEEcCCCCCcccCHHH
Q 012641 269 LIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp~~i 289 (459)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.92 E-value=0.06 Score=30.45 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=16.5
Q ss_pred CCCCCEEEcCCCCCcccCHHH
Q 012641 269 LIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp~~i 289 (459)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=0.044 Score=48.05 Aligned_cols=42 Identities=33% Similarity=0.587 Sum_probs=34.4
Q ss_pred cccCccEEEEecC-CCCCC--cccccCCCcceeecccCcchhhhc
Q 012641 398 FSQNLQDLSIINC-SIKDL--TCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 398 ~l~~L~~L~L~~~-~l~~l--p~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
..++|+.|+|++| ++++- -++..+++|+.|.+++.+.+....
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANLE 193 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhchH
Confidence 3789999999999 87774 468899999999999877665443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.92 E-value=0.007 Score=54.03 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=65.7
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
..+.+..|.+..+ ..-.+-..++-+..+..|+++.|.+..+|.+ ++....++.+++..| +.+.+|.+.+.+++++|+
T Consensus 40 ~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 3455666666665 4444434555567777888888888888888 888888999999888 899999999999999999
Q ss_pred EcCCCCCc
Q 012641 276 NLSNTNIC 283 (459)
Q Consensus 276 ~l~~~~l~ 283 (459)
++.+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99998754
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.86 E-value=0.011 Score=57.17 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=61.7
Q ss_pred cceEEEeecCCCccccC--CCCCCCCcceeeeeeccc-cc-ccchhHHhcCCCccEEEccCCCCcccc--cccccCCCCC
Q 012641 199 EAVRVSLWRSPSIDSLS--PTPPCCPRLLTLLVRYTM-IK-EFENKFFQSMHALRVLDSSQNAKLSKL--HVGEGELIDL 272 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~l--P~~i~~L~~L 272 (459)
-++.+++.+.-.+..-+ .....+++++.|.+.+|. +. ..-.++-..++.|++|++..|..++.. -.-....++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45677777763333222 334568888888888873 22 122233456788888888887566543 2223456788
Q ss_pred CEEEcCCC-CCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 273 QYLNLSNT-NICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 273 ~~L~l~~~-~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
.||+++.| .|+. .+++ .+ ..+.++++.+.+.||.
T Consensus 219 ~~lNlSwc~qi~~--~gv~----~~----~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 219 KYLNLSWCPQISG--NGVQ----AL----QRGCKELEKLSLKGCL 253 (483)
T ss_pred HHhhhccCchhhc--Ccch----HH----hccchhhhhhhhcccc
Confidence 88888887 3443 1111 11 3445556666555654
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.42 E-value=0.86 Score=37.06 Aligned_cols=58 Identities=12% Similarity=0.269 Sum_probs=21.5
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSN 279 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~ 279 (459)
..+++|+.+.+..+ +..++...|.++..|+.+.+..+ +..++. .+....+|+.+++..
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEETT
T ss_pred cccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccccCc
Confidence 34444555554432 44444444445444555555322 223322 223344555555443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.99 E-value=0.29 Score=27.57 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=16.4
Q ss_pred CCCccEEEccCCCCcccccccc
Q 012641 245 MHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 245 l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
+.+|++|+|++| .++.+|...
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467888888888 888887654
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.99 E-value=0.29 Score=27.57 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=16.4
Q ss_pred CCCccEEEccCCCCcccccccc
Q 012641 245 MHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 245 l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
+.+|++|+|++| .++.+|...
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467888888888 888887654
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.15 E-value=0.24 Score=50.47 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=8.3
Q ss_pred cceeecccCcchh
Q 012641 424 LRFLFAKDCPSLE 436 (459)
Q Consensus 424 L~~L~l~~c~~l~ 436 (459)
|+.|+++.|..+.
T Consensus 403 l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 403 LRVLNLSDCRLVT 415 (482)
T ss_pred cceEecccCcccc
Confidence 6777777666444
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.29 E-value=0.069 Score=47.87 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhh
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKA 295 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~ 295 (459)
.++..+....+|+++.|.+..+... |+.++.|.-||++.| .+..+|...+.+..++.+++..|....+|.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~-------- 105 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPK-------- 105 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCc--------
Confidence 4445566666677766655555554 666666666777777 676677777777777777776666666554
Q ss_pred CCCCcCCCCCCCCEeeecCCCC
Q 012641 296 IPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 296 lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+ .+.+++++.++.-++.+
T Consensus 106 ---s-~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 106 ---S-QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ---c-ccccCCcchhhhccCcc
Confidence 4 77888888888877654
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.27 E-value=1.7 Score=35.33 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhh
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLK 294 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~ 294 (459)
..+..+.+|+.+.+.. .+..++...|.++..|+.+.+..+ +..++. .+.....|+++.+.. .+..++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~------- 74 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGD------- 74 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccc-------
Confidence 3456677888888764 566777777888888888888765 555543 355666788888865 4444432
Q ss_pred hCCCCcCCCCCCCCEeeecCC
Q 012641 295 AIPAGMLSSLLSLRVFSWVPT 315 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~~~ 315 (459)
.++..+++|+.+.+..+
T Consensus 75 ----~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 75 ----NAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp ----TTTTT-TTECEEEETTT
T ss_pred ----ccccccccccccccCcc
Confidence 33677888888887543
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.21 E-value=2.1 Score=39.59 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=79.7
Q ss_pred CCCCCCCcceeeeeeccccc-ccc---hhHHhcCCCccEEEccCCCCccccc--------------ccccCCCCCCEEEc
Q 012641 216 PTPPCCPRLLTLLVRYTMIK-EFE---NKFFQSMHALRVLDSSQNAKLSKLH--------------VGEGELIDLQYLNL 277 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~~l~~Lr~L~L~~~~~i~~lP--------------~~i~~L~~L~~L~l 277 (459)
+.+..||+|+..+++.|.+. ..| .+++++-..|..|.+++| .+..+- +.+.+-+.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 56678999999999998443 222 355778889999999999 766442 22345677999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
..|.+..-|...... . +..=.+|+++.+..|.+.. .+........+..+++|+.|++..+
T Consensus 165 grNRlengs~~~~a~------~-l~sh~~lk~vki~qNgIrp-------egv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 165 GRNRLENGSKELSAA------L-LESHENLKEVKIQQNGIRP-------EGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred ccchhccCcHHHHHH------H-HHhhcCceeEEeeecCcCc-------chhHHHHHHHHHHhCcceeeecccc
Confidence 999888777543321 1 2222578888888887621 0001112345667888999988754
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.54 E-value=6 Score=44.15 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhh-hhcCCCchhHHHHhhhhcc
Q 012641 19 ELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKF-SYDRLTSETHKTCFLYCSL 97 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~lk~cfl~~~~ 97 (459)
+...+|.+.|+|.|+++..++..++..... -......+... ....+...+.- -++.||+ ..+..++..|+
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~ 276 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSS--LHDSARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSV 276 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCc--hhhhhHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcc
Confidence 356789999999999999999888652210 01111111100 01134444433 3889999 59999999999
Q ss_pred cCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHHHHHH
Q 012641 98 FPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIA 171 (459)
Q Consensus 98 fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~~~~~ 171 (459)
++. ++. .+.. .+... +.+...+++|.+++++..... +....|+.|++++++.....
T Consensus 277 ~~~---~~~-~l~~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~-~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 277 LRS---MND-ALIV-----RVTGE--------ENGQMRLEELERQGLFIQRMD-DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ccc---CCH-HHHH-----HHcCC--------CcHHHHHHHHHHCCCeeEeec-CCCCEEehhHHHHHHHHHHH
Confidence 873 442 2222 11111 124567899999999753221 11346889999999998764
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.84 E-value=0.78 Score=25.91 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=14.0
Q ss_pred CCCCEEEcCCCCCcccCH
Q 012641 270 IDLQYLNLSNTNICELPI 287 (459)
Q Consensus 270 ~~L~~L~l~~~~l~~lp~ 287 (459)
.+|++|++++|++++||+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888775
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.02 E-value=0.31 Score=42.87 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=31.2
Q ss_pred ccCccEEEEecC-CCCC--Ccccc-cCCCcceeecccCcchhhhcc
Q 012641 399 SQNLQDLSIINC-SIKD--LTCIL-YIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 399 l~~L~~L~L~~~-~l~~--lp~l~-~l~~L~~L~l~~c~~l~~i~~ 440 (459)
++.++.|.+.+| .+.+ +..++ -.|+|+.|+|++|+.+++-+-
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 677888888888 6555 22232 368999999999999987555
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.49 E-value=0.95 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCCcceeecccCcchhhhc
Q 012641 421 IPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 421 l~~L~~L~l~~c~~l~~i~ 439 (459)
+|+|+.|+|++|+++.+..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4789999999999887654
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=77.15 E-value=1.4 Score=44.95 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=27.5
Q ss_pred CccEEEEecCCCCCCcc---ccc-CCCcceeecccCcchhhhcc
Q 012641 401 NLQDLSIINCSIKDLTC---ILY-IPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 401 ~L~~L~L~~~~l~~lp~---l~~-l~~L~~L~l~~c~~l~~i~~ 440 (459)
.++.|++..|....... ... ..+++.+++.+|..+.....
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 38999999994333332 222 67788899998887776654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.61 E-value=2.2 Score=24.16 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=11.4
Q ss_pred CCCCCEEEcCCCCCccc
Q 012641 269 LIDLQYLNLSNTNICEL 285 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~l 285 (459)
+.+|+.|++++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45677777777776544
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.23 E-value=3.3 Score=22.57 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=7.4
Q ss_pred CCCCEeeecCCCC
Q 012641 305 LSLRVFSWVPTRY 317 (459)
Q Consensus 305 ~~L~~L~l~~~~~ 317 (459)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 5677777777665
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.74 E-value=8.7 Score=21.98 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=9.3
Q ss_pred CCCCEEEcCCCCCc
Q 012641 270 IDLQYLNLSNTNIC 283 (459)
Q Consensus 270 ~~L~~L~l~~~~l~ 283 (459)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35777777777664
No 90
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=35.44 E-value=4.1e+02 Score=25.51 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCchhHHHHHHH
Q 012641 19 ELAETVADMCGGLPLALVTIGS 40 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~ 40 (459)
+....|++.|+|.|-.+..+..
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHH
Confidence 3577888999999854444443
No 91
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=33.92 E-value=4.1e+02 Score=25.03 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCchhHHHHHHH
Q 012641 19 ELAETVADMCGGLPLALVTIGS 40 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~ 40 (459)
+....|++.|+|.|-.+..++.
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHH
Confidence 3556788888888865544444
No 92
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=33.11 E-value=99 Score=24.25 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=39.2
Q ss_pred ccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChh-hHHHHHHHHhc
Q 012641 5 KVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPD-NWRYAIEELQR 60 (459)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~-~W~~~~~~l~~ 60 (459)
..|+.+..+.|.....+-+..+...-.|+|+.++-+.-....+.. .|..+++.+..
T Consensus 35 ~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkP 91 (108)
T PF02284_consen 35 NLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKP 91 (108)
T ss_dssp HHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHH
T ss_pred HHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhh
Confidence 346777788899888888888999999999999877655444433 89988886654
No 93
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=30.35 E-value=1e+02 Score=21.68 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHcCCchhHHHHHHHHHcCC
Q 012641 16 EIRELAETVADMCGGLPLALVTIGSAMASR 45 (459)
Q Consensus 16 ~~~~i~~~iv~kc~GlPLai~~ig~~L~~~ 45 (459)
.++.+.-.|++.|+|++=-+-++-+.|+++
T Consensus 2 ~~D~~ll~iaq~~~~I~~~Ld~fF~FL~Rk 31 (62)
T PF14050_consen 2 RFDNMLLSIAQQCGGIEDFLDTFFSFLRRK 31 (62)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 466788899999999999999999999985
No 94
>PF14162 YozD: YozD-like protein
Probab=27.01 E-value=70 Score=21.27 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHcccccee
Q 012641 128 AKREGNLILESLKLACLLEEV 148 (459)
Q Consensus 128 ~e~~~~~~~~~L~~r~li~~~ 148 (459)
.|++|+-++.+|+.|+.+-..
T Consensus 10 TEEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHHHccCCCcH
Confidence 478999999999999998644
No 95
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=26.21 E-value=1.6e+02 Score=22.91 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=42.4
Q ss_pred cCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCC-ChhhHHHHHHHHhc
Q 012641 6 VTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRR-DPDNWRYAIEELQR 60 (459)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~-~~~~W~~~~~~l~~ 60 (459)
.|+.+..++|....-+-+..+...-.|+|+.++-+.-.... ..+.|..+++.+..
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp 88 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKP 88 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhH
Confidence 46667788888888888888888999999999987663333 45679988876654
No 96
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=25.89 E-value=24 Score=18.57 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=9.3
Q ss_pred CCEEEcCCCCCcccCHH
Q 012641 272 LQYLNLSNTNICELPIG 288 (459)
Q Consensus 272 L~~L~l~~~~l~~lp~~ 288 (459)
|-.|++++++++.|.++
T Consensus 2 LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWEG 18 (20)
T ss_pred cEEEECCCCChHHhcCc
Confidence 44556666666555443
Done!