Query 012641
Match_columns 459
No_of_seqs 232 out of 3482
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.7E-24 5.7E-29 223.6 2.7 159 1-175 301-472 (549)
2 4fcg_A Uncharacterized protein 99.8 1.7E-19 5.9E-24 174.1 12.8 212 198-440 81-295 (328)
3 2z80_A TOLL-like receptor 2, v 99.8 2E-18 7E-23 168.4 10.5 234 181-433 36-312 (353)
4 3zyj_A Leucine-rich repeat-con 99.8 6.6E-18 2.3E-22 169.8 14.4 222 180-432 47-289 (440)
5 4fcg_A Uncharacterized protein 99.7 4.2E-18 1.4E-22 164.4 11.9 181 221-440 80-271 (328)
6 3zyi_A Leucine-rich repeat-con 99.7 7.7E-18 2.6E-22 169.9 14.2 222 180-432 58-300 (452)
7 2z66_A Variable lymphocyte rec 99.7 1.6E-17 5.4E-22 158.7 15.3 216 180-431 11-232 (306)
8 1xku_A Decorin; proteoglycan, 99.7 3.3E-17 1.1E-21 158.2 16.0 226 181-440 36-280 (330)
9 3o6n_A APL1; leucine-rich repe 99.7 1.1E-17 3.6E-22 165.5 12.0 88 198-287 45-134 (390)
10 1h6u_A Internalin H; cell adhe 99.7 2.4E-17 8.4E-22 157.6 13.2 197 194-439 37-233 (308)
11 1ozn_A Reticulon 4 receptor; N 99.7 5.1E-17 1.7E-21 153.5 14.8 218 180-433 15-236 (285)
12 2ft3_A Biglycan; proteoglycan, 99.7 3E-17 1E-21 158.7 13.4 227 181-440 38-281 (332)
13 3o6n_A APL1; leucine-rich repe 99.7 2.9E-17 1E-21 162.3 13.4 126 180-318 49-178 (390)
14 4fmz_A Internalin; leucine ric 99.7 6.2E-17 2.1E-21 157.3 15.4 226 181-433 49-298 (347)
15 4fmz_A Internalin; leucine ric 99.7 1.1E-16 3.8E-21 155.5 16.3 219 192-438 38-280 (347)
16 2id5_A Lingo-1, leucine rich r 99.7 4.2E-17 1.4E-21 165.6 13.4 156 180-350 15-185 (477)
17 3vq2_A TLR4, TOLL-like recepto 99.7 5.4E-17 1.8E-21 169.8 14.4 134 180-317 15-165 (606)
18 2o6q_A Variable lymphocyte rec 99.7 8.9E-17 3E-21 150.7 14.0 176 198-433 37-216 (270)
19 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.4E-16 4.8E-21 165.2 16.7 109 179-292 34-145 (562)
20 2z62_A TOLL-like receptor 4, v 99.7 2.1E-16 7.3E-21 148.5 16.1 221 181-438 12-246 (276)
21 3oja_B Anopheles plasmodium-re 99.7 5.9E-17 2E-21 169.2 13.1 125 181-318 56-184 (597)
22 2z7x_B TOLL-like receptor 1, v 99.7 1.4E-16 4.9E-21 163.5 15.6 106 182-292 6-114 (520)
23 3v47_A TOLL-like receptor 5B a 99.7 6.5E-17 2.2E-21 163.1 12.1 135 180-318 14-167 (455)
24 1ogq_A PGIP-2, polygalacturona 99.7 9.9E-18 3.4E-22 160.7 5.7 199 194-432 72-278 (313)
25 1p9a_G Platelet glycoprotein I 99.7 1.8E-16 6.1E-21 150.2 14.2 195 197-432 9-205 (290)
26 3oja_B Anopheles plasmodium-re 99.7 4.7E-17 1.6E-21 169.9 10.3 132 196-352 49-182 (597)
27 2xwt_C Thyrotropin receptor; s 99.7 9.1E-17 3.1E-21 147.7 11.1 205 188-434 23-238 (239)
28 1ogq_A PGIP-2, polygalacturona 99.7 6.4E-17 2.2E-21 155.0 10.4 199 198-436 50-257 (313)
29 1xku_A Decorin; proteoglycan, 99.7 2.2E-16 7.5E-21 152.4 14.3 209 199-440 32-257 (330)
30 3sfz_A APAF-1, apoptotic pepti 99.7 3.9E-17 1.3E-21 184.5 10.4 145 14-174 303-452 (1249)
31 3t6q_A CD180 antigen; protein- 99.7 1.7E-16 5.9E-21 165.9 14.6 152 180-346 16-182 (606)
32 1ziw_A TOLL-like receptor 3; i 99.7 1.4E-16 4.7E-21 169.0 13.4 124 180-317 8-133 (680)
33 1o6v_A Internalin A; bacterial 99.7 2.5E-16 8.6E-21 159.4 14.7 127 183-318 53-190 (466)
34 1ozn_A Reticulon 4 receptor; N 99.7 2.3E-16 7.8E-21 149.0 12.4 201 201-440 14-218 (285)
35 2ft3_A Biglycan; proteoglycan, 99.7 2.4E-16 8.2E-21 152.3 12.3 210 199-440 34-258 (332)
36 2id5_A Lingo-1, leucine rich r 99.7 3E-16 1E-20 159.3 13.3 90 196-287 78-169 (477)
37 3bz5_A Internalin-J, INLJ; leu 99.7 7.4E-16 2.5E-20 155.3 15.9 128 187-351 53-180 (457)
38 2z80_A TOLL-like receptor 2, v 99.7 2.2E-16 7.6E-21 153.9 11.1 211 203-440 36-294 (353)
39 3rfs_A Internalin B, repeat mo 99.7 1.4E-15 4.7E-20 142.7 15.9 131 193-351 36-167 (272)
40 4ecn_A Leucine-rich repeat pro 99.7 1.9E-16 6.5E-21 170.4 11.1 140 194-351 444-629 (876)
41 1h6t_A Internalin B; cell adhe 99.7 5.8E-16 2E-20 146.8 12.7 169 193-431 41-209 (291)
42 3zyi_A Leucine-rich repeat-con 99.6 1.1E-15 3.6E-20 154.2 14.9 193 194-413 95-303 (452)
43 4eco_A Uncharacterized protein 99.6 1.9E-16 6.4E-21 166.5 8.6 87 198-288 305-395 (636)
44 3j0a_A TOLL-like receptor 5; m 99.6 4.7E-15 1.6E-19 160.9 19.8 148 179-351 7-158 (844)
45 1o6v_A Internalin A; bacterial 99.6 3.1E-15 1.1E-19 151.3 16.8 103 196-317 44-146 (466)
46 3m19_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 137.6 16.1 103 200-317 16-119 (251)
47 2z81_A CD282 antigen, TOLL-lik 99.6 8.3E-16 2.8E-20 158.8 12.5 152 184-350 13-181 (549)
48 1h6u_A Internalin H; cell adhe 99.6 1.2E-15 4.1E-20 145.8 12.7 177 217-440 36-212 (308)
49 3g06_A SSPH2 (leucine-rich rep 99.6 1.4E-15 4.9E-20 158.3 13.8 214 183-433 47-295 (622)
50 1wwl_A Monocyte differentiatio 99.6 7.8E-16 2.7E-20 147.4 11.0 203 197-436 94-309 (312)
51 3vq2_A TLR4, TOLL-like recepto 99.6 1.1E-15 3.7E-20 159.9 12.7 222 189-440 298-538 (606)
52 2z66_A Variable lymphocyte rec 99.6 4.8E-16 1.6E-20 148.3 9.1 217 181-433 33-259 (306)
53 3g06_A SSPH2 (leucine-rich rep 99.6 8.5E-16 2.9E-20 159.9 11.7 208 198-440 40-278 (622)
54 3zyj_A Leucine-rich repeat-con 99.6 6.2E-15 2.1E-19 148.0 17.5 179 197-412 111-291 (440)
55 4eco_A Uncharacterized protein 99.6 2.8E-16 9.5E-21 165.2 7.8 215 194-440 202-474 (636)
56 3v47_A TOLL-like receptor 5B a 99.6 1.1E-15 3.8E-20 154.0 11.9 86 197-284 78-168 (455)
57 2z63_A TOLL-like receptor 4, v 99.6 2.5E-15 8.4E-20 155.8 14.6 147 179-350 10-158 (570)
58 4ecn_A Leucine-rich repeat pro 99.6 6.4E-16 2.2E-20 166.3 10.4 120 194-317 511-656 (876)
59 3t6q_A CD180 antigen; protein- 99.6 3.4E-15 1.2E-19 156.1 14.7 219 197-440 277-517 (606)
60 3rgz_A Protein brassinosteroid 99.6 2.4E-15 8.3E-20 161.5 12.6 140 196-350 267-427 (768)
61 3oja_A Leucine-rich immune mol 99.6 1.2E-15 4E-20 155.2 9.4 199 198-433 34-248 (487)
62 3o53_A Protein LRIM1, AGAP0063 99.6 8.1E-16 2.8E-20 147.6 7.7 98 198-317 34-132 (317)
63 2z7x_B TOLL-like receptor 1, v 99.6 1.3E-14 4.5E-19 148.8 17.3 110 201-317 3-127 (520)
64 1m9s_A Internalin B; cell inva 99.6 2.3E-15 7.9E-20 156.4 11.6 126 193-351 38-163 (605)
65 2z62_A TOLL-like receptor 4, v 99.6 3E-15 1E-19 140.6 11.3 194 210-440 18-217 (276)
66 3bz5_A Internalin-J, INLJ; leu 99.6 4E-15 1.4E-19 150.0 12.9 205 193-440 37-250 (457)
67 3rgz_A Protein brassinosteroid 99.6 2.7E-15 9.3E-20 161.1 12.4 139 198-351 394-548 (768)
68 3rfs_A Internalin B, repeat mo 99.6 7.5E-15 2.6E-19 137.6 13.4 145 180-350 45-190 (272)
69 2o6q_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 136.4 14.2 146 180-350 41-190 (270)
70 1vt4_I APAF-1 related killer D 99.6 6.1E-16 2.1E-20 164.1 5.9 118 19-167 317-436 (1221)
71 4glp_A Monocyte differentiatio 99.6 6.4E-15 2.2E-19 140.8 10.5 200 198-432 91-304 (310)
72 1wwl_A Monocyte differentiatio 99.6 1.6E-15 5.3E-20 145.3 6.0 188 220-440 93-291 (312)
73 2xwt_C Thyrotropin receptor; s 99.6 7.6E-15 2.6E-19 134.8 9.9 189 210-440 22-222 (239)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.1E-14 1E-18 147.6 15.2 86 199-288 32-118 (562)
75 4ezg_A Putative uncharacterize 99.6 2.4E-14 8.1E-19 127.5 11.9 150 219-431 41-190 (197)
76 1h6t_A Internalin B; cell adhe 99.5 1.3E-14 4.6E-19 137.3 10.8 161 210-440 35-195 (291)
77 1z6t_A APAF-1, apoptotic prote 99.5 9.6E-15 3.3E-19 152.3 10.3 139 17-171 306-449 (591)
78 3j0a_A TOLL-like receptor 5; m 99.5 3.7E-14 1.3E-18 153.9 13.9 115 193-318 43-161 (844)
79 4ay9_X Follicle-stimulating ho 99.5 3.3E-14 1.1E-18 138.3 12.1 105 180-287 13-121 (350)
80 2z63_A TOLL-like receptor 4, v 99.5 6.1E-14 2.1E-18 145.3 14.8 201 198-433 325-529 (570)
81 3m19_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 126.9 15.9 145 180-350 18-164 (251)
82 4g8a_A TOLL-like receptor 4; l 99.5 1.2E-13 4E-18 144.8 16.6 42 398-440 516-559 (635)
83 2z81_A CD282 antigen, TOLL-lik 99.5 4.4E-14 1.5E-18 145.8 13.1 184 222-433 310-508 (549)
84 1ziw_A TOLL-like receptor 3; i 99.5 4.7E-14 1.6E-18 149.5 13.1 187 222-431 381-593 (680)
85 1xeu_A Internalin C; cellular 99.5 7E-15 2.4E-19 137.1 5.8 104 194-317 37-140 (263)
86 1jl5_A Outer protein YOPM; leu 99.5 6.6E-14 2.3E-18 140.9 13.2 219 198-439 131-373 (454)
87 3oja_A Leucine-rich immune mol 99.5 1.6E-14 5.5E-19 146.8 8.7 215 180-431 38-271 (487)
88 3o53_A Protein LRIM1, AGAP0063 99.5 1.1E-14 3.8E-19 139.7 6.9 206 180-432 38-247 (317)
89 1p9a_G Platelet glycoprotein I 99.5 5.7E-14 1.9E-18 132.9 11.2 193 180-413 14-208 (290)
90 1jl5_A Outer protein YOPM; leu 99.5 1.1E-13 3.8E-18 139.3 13.1 180 181-380 76-270 (454)
91 1m9s_A Internalin B; cell inva 99.5 1.8E-14 6.1E-19 149.7 7.4 188 203-439 26-213 (605)
92 4g8a_A TOLL-like receptor 4; l 99.5 5.6E-14 1.9E-18 147.3 10.7 148 180-352 35-184 (635)
93 2ast_B S-phase kinase-associat 99.5 3.3E-14 1.1E-18 137.3 8.1 200 198-432 70-282 (336)
94 2v9t_B SLIT homolog 2 protein 99.5 3.8E-13 1.3E-17 121.8 12.7 119 203-348 16-135 (220)
95 2xot_A Amphoterin-induced prot 99.5 2.5E-13 8.4E-18 132.7 12.3 172 201-431 21-198 (361)
96 2o6s_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 120.8 12.2 84 222-317 28-112 (208)
97 3cvr_A Invasion plasmid antige 99.5 3.1E-13 1.1E-17 139.0 13.3 182 199-434 60-242 (571)
98 4ay9_X Follicle-stimulating ho 99.5 1.8E-13 6E-18 133.1 10.3 209 202-440 13-241 (350)
99 4glp_A Monocyte differentiatio 99.4 1E-13 3.5E-18 132.4 7.5 210 198-440 64-289 (310)
100 2v9t_B SLIT homolog 2 protein 99.4 5.6E-13 1.9E-17 120.7 11.7 146 180-351 15-162 (220)
101 3e6j_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 120.3 12.2 144 181-351 24-169 (229)
102 3e6j_A Variable lymphocyte rec 99.4 2.3E-12 8E-17 117.3 13.9 122 201-350 22-144 (229)
103 1xeu_A Internalin C; cellular 99.4 7.4E-13 2.5E-17 123.3 10.3 170 198-416 19-188 (263)
104 2v70_A SLIT-2, SLIT homolog 2 99.4 1.6E-12 5.3E-17 117.8 11.7 145 181-351 16-163 (220)
105 2ca6_A RAN GTPase-activating p 99.4 4.5E-14 1.6E-18 139.2 1.3 215 198-433 32-314 (386)
106 2v70_A SLIT-2, SLIT homolog 2 99.4 3.1E-12 1.1E-16 115.7 13.1 122 201-349 14-137 (220)
107 2o6s_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 115.2 12.4 145 181-351 12-158 (208)
108 4ezg_A Putative uncharacterize 99.4 2.6E-12 8.8E-17 114.2 11.3 125 197-352 43-170 (197)
109 2ast_B S-phase kinase-associat 99.4 8.6E-14 2.9E-18 134.3 1.7 199 200-435 49-260 (336)
110 2ell_A Acidic leucine-rich nuc 99.3 1E-12 3.6E-17 113.5 6.7 129 198-352 24-158 (168)
111 2je0_A Acidic leucine-rich nuc 99.3 1E-12 3.5E-17 111.1 6.4 125 198-348 17-147 (149)
112 2ca6_A RAN GTPase-activating p 99.3 1.9E-12 6.4E-17 127.6 6.1 202 211-432 21-284 (386)
113 1w8a_A SLIT protein; signaling 99.3 9.4E-12 3.2E-16 110.1 9.5 124 201-351 11-136 (192)
114 1a9n_A U2A', U2A'; complex (nu 99.3 6.4E-12 2.2E-16 109.4 7.8 132 195-354 16-153 (176)
115 2xot_A Amphoterin-induced prot 99.3 1.4E-11 4.9E-16 120.1 11.0 151 180-353 22-175 (361)
116 3cvr_A Invasion plasmid antige 99.3 7.3E-12 2.5E-16 128.8 9.0 159 222-440 59-224 (571)
117 2je0_A Acidic leucine-rich nuc 99.3 1.1E-11 3.9E-16 104.6 8.6 125 246-430 17-148 (149)
118 2wfh_A SLIT homolog 2 protein 99.3 2.4E-11 8.1E-16 107.5 10.8 122 201-350 13-135 (193)
119 2wfh_A SLIT homolog 2 protein 99.3 2.1E-11 7.1E-16 107.9 10.4 124 180-317 14-138 (193)
120 4b8c_D Glucose-repressible alc 99.3 3.5E-12 1.2E-16 135.6 6.2 112 215-353 217-328 (727)
121 3goz_A Leucine-rich repeat-con 99.2 2.8E-12 9.5E-17 125.2 3.7 86 199-286 23-125 (362)
122 2o6r_A Variable lymphocyte rec 99.2 3.5E-11 1.2E-15 104.8 10.2 124 201-351 10-134 (177)
123 2ell_A Acidic leucine-rich nuc 99.2 1.6E-10 5.4E-15 99.6 14.1 130 179-319 27-161 (168)
124 1w8a_A SLIT protein; signaling 99.2 7E-11 2.4E-15 104.4 11.0 124 180-317 12-138 (192)
125 1dce_A Protein (RAB geranylger 99.2 3E-11 1E-15 124.6 9.7 98 224-349 443-541 (567)
126 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.6E-15 101.7 11.6 123 181-317 12-136 (177)
127 1a9n_A U2A', U2A'; complex (nu 99.2 5.9E-11 2E-15 103.2 8.6 128 179-317 22-152 (176)
128 2r9u_A Variable lymphocyte rec 99.2 1E-10 3.4E-15 101.6 9.9 103 201-318 15-118 (174)
129 1z7x_W Ribonuclease inhibitor; 99.2 2.2E-12 7.4E-17 130.0 -1.4 138 197-351 27-180 (461)
130 3g39_A Variable lymphocyte rec 99.1 1.4E-10 4.7E-15 100.4 9.6 103 200-317 11-114 (170)
131 4b8c_D Glucose-repressible alc 99.1 3.1E-11 1.1E-15 128.3 6.6 110 195-319 221-330 (727)
132 3goz_A Leucine-rich repeat-con 99.1 8.8E-12 3E-16 121.7 1.2 194 219-433 19-264 (362)
133 1dce_A Protein (RAB geranylger 99.1 2.3E-10 7.7E-15 118.1 11.5 152 219-407 406-567 (567)
134 1z7x_W Ribonuclease inhibitor; 99.1 1.7E-11 5.9E-16 123.4 0.6 159 198-378 3-181 (461)
135 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.5E-16 110.3 -2.2 143 224-429 25-181 (198)
136 2r9u_A Variable lymphocyte rec 99.0 9.9E-10 3.4E-14 95.3 10.4 111 179-292 15-127 (174)
137 1ds9_A Outer arm dynein; leuci 99.0 1.6E-11 5.3E-16 109.2 -4.4 105 198-317 48-152 (198)
138 3g39_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 91.4 10.4 109 181-292 14-124 (170)
139 2p1m_B Transport inhibitor res 98.8 5E-10 1.7E-14 116.4 0.3 141 196-350 154-323 (594)
140 2ifg_A High affinity nerve gro 98.8 9.2E-09 3.2E-13 99.4 8.8 95 210-318 20-116 (347)
141 3ogk_B Coronatine-insensitive 98.8 2E-09 6.8E-14 111.8 3.4 139 197-349 163-326 (592)
142 2p1m_B Transport inhibitor res 98.8 3.2E-09 1.1E-13 110.2 4.4 128 198-348 105-242 (594)
143 3sb4_A Hypothetical leucine ri 98.7 5E-08 1.7E-12 93.6 11.2 55 221-277 100-155 (329)
144 3ogk_B Coronatine-insensitive 98.7 7.4E-09 2.5E-13 107.5 3.5 213 199-437 139-392 (592)
145 2ifg_A High affinity nerve gro 98.5 1.7E-07 5.7E-12 90.5 8.7 104 181-286 13-119 (347)
146 3sb4_A Hypothetical leucine ri 98.5 5.4E-08 1.8E-12 93.3 4.9 88 197-287 24-141 (329)
147 3un9_A NLR family member X1; l 98.4 6.6E-08 2.3E-12 94.3 2.5 138 198-352 72-222 (372)
148 3un9_A NLR family member X1; l 98.2 1E-07 3.5E-12 93.0 -1.0 83 199-283 102-196 (372)
149 4fdw_A Leucine rich hypothetic 98.0 4.6E-05 1.6E-09 74.9 13.7 78 223-314 158-235 (401)
150 2ra8_A Uncharacterized protein 98.0 2.3E-06 8E-11 82.8 3.8 104 198-314 107-228 (362)
151 4fdw_A Leucine rich hypothetic 98.0 5.8E-05 2E-09 74.1 12.6 82 199-286 158-241 (401)
152 3e4g_A ATP synthase subunit S, 97.9 1.2E-05 3.9E-10 68.9 5.4 92 305-438 61-155 (176)
153 1io0_A Tropomodulin; LRR prote 97.8 2.5E-05 8.5E-10 68.0 5.3 120 218-354 32-164 (185)
154 3rw6_A Nuclear RNA export fact 97.8 9.7E-06 3.3E-10 74.6 2.8 111 220-347 139-257 (267)
155 3e4g_A ATP synthase subunit S, 97.7 6.4E-05 2.2E-09 64.3 6.5 94 213-317 52-151 (176)
156 2ra8_A Uncharacterized protein 97.6 0.00015 5.1E-09 70.1 8.2 133 197-351 171-317 (362)
157 3rw6_A Nuclear RNA export fact 97.5 6E-05 2E-09 69.3 4.8 87 220-313 168-259 (267)
158 1io0_A Tropomodulin; LRR prote 96.8 0.0004 1.4E-08 60.2 2.0 94 240-348 30-128 (185)
159 3rfe_A Platelet glycoprotein I 95.8 0.011 3.9E-07 47.7 5.2 54 250-317 12-67 (130)
160 4gt6_A Cell surface protein; l 94.6 0.11 3.7E-06 50.4 9.0 106 216-349 259-365 (394)
161 3rfe_A Platelet glycoprotein I 94.4 0.06 2E-06 43.3 5.5 54 226-283 12-68 (130)
162 4h09_A Hypothetical leucine ri 93.6 0.33 1.1E-05 46.5 10.3 81 219-313 237-318 (379)
163 4fs7_A Uncharacterized protein 93.0 0.17 5.9E-06 48.9 7.1 120 198-349 253-374 (394)
164 4h09_A Hypothetical leucine ri 91.9 0.42 1.4E-05 45.7 8.3 101 198-314 240-342 (379)
165 4gt6_A Cell surface protein; l 91.8 0.66 2.2E-05 44.7 9.6 41 236-278 255-296 (394)
166 4fs7_A Uncharacterized protein 91.3 0.9 3.1E-05 43.7 10.0 121 198-349 230-351 (394)
167 1pgv_A TMD-1, tropomodulin TMD 91.3 0.5 1.7E-05 40.8 7.2 115 221-353 40-169 (197)
168 2qen_A Walker-type ATPase; unk 82.0 7.1 0.00024 36.2 10.0 117 19-166 226-347 (350)
169 2fna_A Conserved hypothetical 76.3 7.4 0.00025 36.2 8.2 117 22-166 233-355 (357)
170 1pgv_A TMD-1, tropomodulin TMD 76.2 5 0.00017 34.4 6.2 114 198-316 41-168 (197)
171 1w5s_A Origin recognition comp 75.6 13 0.00045 35.4 9.9 113 18-149 239-372 (412)
172 1hqc_A RUVB; extended AAA-ATPa 74.0 1.1 3.9E-05 41.5 1.7 35 113-147 289-324 (324)
173 1v54_E Cytochrome C oxidase po 37.6 59 0.002 24.4 5.0 55 6-60 36-91 (109)
174 1fnn_A CDC6P, cell division co 30.2 3.2E+02 0.011 25.0 10.6 89 77-172 280-385 (389)
175 2kz2_A Calmodulin, CAM; TR2C, 25.2 1.8E+02 0.0063 20.5 6.8 63 30-93 10-72 (94)
176 2y69_E Cytochrome C oxidase su 23.8 1.3E+02 0.0044 24.0 5.0 55 6-60 79-134 (152)
177 2vda_B Maltoporin; sugar trans 21.5 38 0.0013 17.9 1.1 18 27-44 7-24 (28)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.89 E-value=1.7e-24 Score=223.61 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=122.3
Q ss_pred CcccccCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhh
Q 012641 1 MFRLKVTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSY 80 (459)
Q Consensus 1 LF~~~~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy 80 (459)
||+++||+.. .++.+++++++|+++|+|+||||+++|+.|+. ++ |+.+ +.+.+..+... ..++..++.+||
T Consensus 301 Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~-~~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy 371 (549)
T 2a5y_B 301 FLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KT---FEKM-AQLNNKLESRG--LVGVECITPYSY 371 (549)
T ss_dssp HHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SS---HHHH-HHHHHHHHHHC--SSTTCCCSSSSS
T ss_pred HHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhcc-ch---HHHH-HHhHHHhhccc--HHHHHHHHhccc
Confidence 5778887654 25789999999999999999999999999987 33 5543 33333222111 236899999999
Q ss_pred cCCCchhHHHHhh-----------hhcccCCCCccCHHHHHHHHHHc--CCCcCCCchHHHHHHHHHHHHHHHHccccce
Q 012641 81 DRLTSETHKTCFL-----------YCSLFPRSQIIMKDELIELWIGE--GLLRDSHNIAAAKREGNLILESLKLACLLEE 147 (459)
Q Consensus 81 ~~L~~~~lk~cfl-----------~~~~fp~~~~i~~~~li~~Wia~--g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~ 147 (459)
++||. ++|.||+ |||+||+++.|+ +++|+|+ ||+.......+.+++++ ||++|+++||++.
T Consensus 372 ~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 372 KSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLS 445 (549)
T ss_dssp SSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSE
T ss_pred ccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeE
Confidence 99999 7999999 999999999998 8999999 99987643456678888 9999999999998
Q ss_pred ecccCccCcEeehHHHHHHHHHHHhccC
Q 012641 148 VEVNNSEDFFKMHDILRDMALWIASSQG 175 (459)
Q Consensus 148 ~~~~~~~~~~~~hdli~~l~~~~~~~~~ 175 (459)
...+ ...+|+|||++|++|+.++.+++
T Consensus 446 ~~~~-~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 446 GKRM-PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EECS-SSCEEECCHHHHHHHHTTSCTHH
T ss_pred ecCC-CceEEEeChHHHHHHHHHHHHHH
Confidence 7542 36789999999999998876553
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.7e-19 Score=174.11 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=149.5
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
..++.|.+.++ .+..+|+.+..+++|++|++++|.+..+|.. ++.+++|++|++++| .+..+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 57888889888 8888887788889999999999888888876 788899999999999 88888988999999999999
Q ss_pred CCCC-CcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhh
Q 012641 278 SNTN-ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSL 356 (459)
Q Consensus 278 ~~~~-l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 356 (459)
++|+ +..+|..+.. ..++.. +.++++|++|++++|.+ . ..+..++++++|+.|+++.+....
T Consensus 158 ~~n~~~~~~p~~~~~--~~~~~~-~~~l~~L~~L~L~~n~l------------~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS--TDASGE-HQGLVNLQSLRLEWTGI------------R-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE--EC-CCC-EEESTTCCEEEEEEECC------------C-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh--ccchhh-hccCCCCCEEECcCCCc------------C-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 9864 4566543221 011122 44588888888888876 2 356678888888888887654432
Q ss_pred hhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecC-CCCCCcc-cccCCCcceeecccCcc
Q 012641 357 NKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKDLTC-ILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 357 ~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~lp~-l~~l~~L~~L~l~~c~~ 434 (459)
++........|+.|+++.+.+... .|.++ ..+++|++|++++| ....+|. ++.+++|++|+|++|+.
T Consensus 221 --l~~~l~~l~~L~~L~Ls~n~~~~~-------~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 221 --LGPAIHHLPKLEELDLRGCTALRN-------YPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp --CCGGGGGCTTCCEEECTTCTTCCB-------CCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred --CchhhccCCCCCEEECcCCcchhh-------hHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 222222223455555543322111 12222 34778888888888 6667774 78888888888888888
Q ss_pred hhhhcc
Q 012641 435 LEEIIA 440 (459)
Q Consensus 435 l~~i~~ 440 (459)
+..+|.
T Consensus 290 ~~~iP~ 295 (328)
T 4fcg_A 290 LSRLPS 295 (328)
T ss_dssp CCCCCG
T ss_pred hhhccH
Confidence 777776
No 3
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=168.37 Aligned_cols=234 Identities=16% Similarity=0.143 Sum_probs=155.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
....+.....+|... .++++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 112 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cC
Confidence 334455666666532 257888888888 8888764 6788888999999888888777666888889999999988 88
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCH--HHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPI--GIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
+.+|.. ++.+++|++|++++|.+..+|. .+..+ +..++...+.++++|++|++++|.+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l------ 186 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL------ 186 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC------
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc------
Confidence 888766 7888889999999888887765 22222 2223222255556666666665554
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcccc--------------Cccc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDI--------------SSSS 389 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~--------------~l~~ 389 (459)
....+..++++++|+.|++..+....+... .......|+.|+++.+.+..+... ++..
T Consensus 187 ------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 187 ------QSYEPKSLKSIQNVSHLILHMKQHILLLEI--FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp ------CEECTTTTTTCSEEEEEEEECSCSTTHHHH--HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ------CccCHHHHhccccCCeecCCCCccccchhh--hhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 333456677777777777765544333221 112234567777755555443211 1111
Q ss_pred ----------cCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 390 ----------LTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 390 ----------~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
.|.++ ..+++|++|++++|.++.+|. ++.+++|++|++++++
T Consensus 259 ~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 259 VKITDESLFQVMKLL--NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CBCCHHHHHHHHHHH--HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcchhhhHHHH--hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 01111 357899999999998889886 5889999999999865
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=6.6e-18 Score=169.77 Aligned_cols=222 Identities=15% Similarity=0.133 Sum_probs=142.3
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|.... ..++.|.+.+| .+..++ ..+.++++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 47 ~v~c~~~~l~~iP~~~~-~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS-TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC-TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC-CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-c
Confidence 45566667777775432 68999999999 888876 67789999999999999999998888999999999999999 9
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+|. .+..+++|++|++++|.+..+|.. .+.++++|++|++.+|... .......+
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-----------~~~~l~~L~~L~l~~~~~l-----------~~i~~~~~ 181 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSY-----------AFNRIPSLRRLDLGELKRL-----------SYISEGAF 181 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTT-----------TTTTCTTCCEEECCCCTTC-----------CEECTTTT
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHH-----------HhhhCcccCEeCCCCCCCc-----------ceeCcchh
Confidence 999976 589999999999999999887652 1555566666666554321 11122234
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCc-----------cccCcccc------CCccCccccc
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-----------IDISSSSL------TTMMKGHFSQ 400 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l-----------~~~~l~~~------~~~i~~~~l~ 400 (459)
.++++|+.|+++.+....+ +... ....|+.|+++.+.+..+ +.+++... +..+ ..++
T Consensus 182 ~~l~~L~~L~L~~n~l~~~---~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~ 255 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREI---PNLT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQ 255 (440)
T ss_dssp TTCSSCCEEECTTSCCSSC---CCCT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--TTCT
T ss_pred hcccccCeecCCCCcCccc---cccC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh--cCCC
Confidence 4555555555543322222 1111 111234444433332222 11111110 1111 2356
Q ss_pred CccEEEEecCCCCCCcc--cccCCCcceeecccC
Q 012641 401 NLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDC 432 (459)
Q Consensus 401 ~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c 432 (459)
+|+.|+|++|.++.+|. +..+++|+.|+|+++
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 77777777776666664 566777777777663
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=4.2e-18 Score=164.41 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=145.3
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
.++++.|++.+|.+..+|.. +..+++|++|++++| .+..+|..++.+++|++|++++|.+..+|.+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~------------ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPAS------------ 145 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGG------------
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHH------------
Confidence 47789999999999999988 778999999999999 9999999999999999999999999887764
Q ss_pred CCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh---------hhccccCceeEEEEeChhhhhhhhcchhHHhhhhh
Q 012641 301 LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE---------LESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRR 371 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~---------l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~ 371 (459)
++++++|++|++++|... ...+.. ++.+++|+.|++..+... .++........|+.
T Consensus 146 l~~l~~L~~L~L~~n~~~------------~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 146 IASLNRLRELSIRACPEL------------TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKS 210 (328)
T ss_dssp GGGCTTCCEEEEEEETTC------------CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTCCE
T ss_pred HhcCcCCCEEECCCCCCc------------cccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCCCE
Confidence 788999999999998762 233333 445999999999877554 33333333446777
Q ss_pred hhccCCCCCCccccCccccCCccCcccccCccEEEEecC-CCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 372 QVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 372 L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|+++.+.+..+. ..+ ..+++|++|++++| ....+|. ++.+++|++|++++|..+..+|.
T Consensus 211 L~L~~N~l~~l~--------~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 211 LKIRNSPLSALG--------PAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp EEEESSCCCCCC--------GGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred EEccCCCCCcCc--------hhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 777666665442 221 34889999999999 6667775 89999999999999988887775
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=7.7e-18 Score=169.91 Aligned_cols=222 Identities=15% Similarity=0.102 Sum_probs=139.8
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|... ..+++.|.+.+| .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 58 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI-PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-W 134 (452)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEECCCCcCccCCCC-CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-c
Confidence 4556666777777533 268999999999 888874 66789999999999999999888777999999999999999 9
Q ss_pred ccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
+..+|.. ++.+++|++|++++|.+..+|.. .+.++++|++|++++|... .......+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~~~~l-----------~~i~~~~~ 192 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSY-----------AFNRVPSLMRLDLGELKKL-----------EYISEGAF 192 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTT-----------TTTTCTTCCEEECCCCTTC-----------CEECTTTT
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHh-----------HHhcCCcccEEeCCCCCCc-----------cccChhhc
Confidence 9998755 88899999999999999887752 1555555555555553321 11122234
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCc-----------cccCcccc------CCccCccccc
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-----------IDISSSSL------TTMMKGHFSQ 400 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l-----------~~~~l~~~------~~~i~~~~l~ 400 (459)
..+++|+.|+++.+....+. ... ....|+.|+++.+.+..+ ..+++.+. +..+ ..++
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~---~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~ 266 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMP---NLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLA 266 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCC---CCT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCT
T ss_pred cCCCCCCEEECCCCcccccc---ccc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh--cCCC
Confidence 44555555555333222211 111 112234444433332222 11111110 1111 2356
Q ss_pred CccEEEEecCCCCCCcc--cccCCCcceeecccC
Q 012641 401 NLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDC 432 (459)
Q Consensus 401 ~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c 432 (459)
+|+.|+|++|.++.+|. +..+++|+.|+|+++
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 77777777776666663 566777777777664
No 7
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.6e-17 Score=158.68 Aligned_cols=216 Identities=16% Similarity=0.046 Sum_probs=142.7
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCC-CCCCCcceeeeeeccccccc---chhHHhcCCCccEEEccC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEF---ENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~Lr~L~L~~ 255 (459)
.+...+.....+|... .+++++|.+.++ .+..+|.. +..+++|++|++++|.+..+ +.. +..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCC
Confidence 3455566677776533 368999999999 89998754 68999999999999977655 455 77899999999999
Q ss_pred CCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchh
Q 012641 256 NAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 335 (459)
Q Consensus 256 ~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
| .+..+|..+..+++|++|++++|.+..+|. +.. +.++++|++|++++|.+ ....+.
T Consensus 88 n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~-~~~l~~L~~L~l~~n~l------------~~~~~~ 144 (306)
T 2z66_A 88 N-GVITMSSNFLGLEQLEHLDFQHSNLKQMSE---------FSV-FLSLRNLIYLDISHTHT------------RVAFNG 144 (306)
T ss_dssp C-SEEEEEEEEETCTTCCEEECTTSEEESSTT---------TTT-TTTCTTCCEEECTTSCC------------EECSTT
T ss_pred C-ccccChhhcCCCCCCCEEECCCCccccccc---------chh-hhhccCCCEEECCCCcC------------Cccchh
Confidence 9 999999999999999999999999887753 012 77788888888888776 334455
Q ss_pred hhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCC
Q 012641 336 ELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL 415 (459)
Q Consensus 336 ~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l 415 (459)
.+..+++|+.|++..+..... .++........|+.|+++.+.+..+.. .++ ..+++|++|++++|.+..+
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~--~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQLEQLSP-------TAF--NSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSCCCEECT-------TTT--TTCTTCCEEECTTSCCSBC
T ss_pred hcccCcCCCEEECCCCccccc-cchhHHhhCcCCCEEECCCCCcCCcCH-------HHh--cCCCCCCEEECCCCccCcc
Confidence 567777777777753322110 012222222345555554444433211 111 1245555555555544444
Q ss_pred cc--cccCCCcceeeccc
Q 012641 416 TC--ILYIPRLRFLFAKD 431 (459)
Q Consensus 416 p~--l~~l~~L~~L~l~~ 431 (459)
+. +..+++|++|++++
T Consensus 215 ~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp CSGGGTTCTTCCEEECTT
T ss_pred ChhhccCcccCCEeECCC
Confidence 42 44555555555555
No 8
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.3e-17 Score=158.21 Aligned_cols=226 Identities=14% Similarity=0.132 Sum_probs=159.6
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.....+|... .+.++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 36 l~~~~~~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (330)
T 1xku_A 36 VQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QL 112 (330)
T ss_dssp EECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cC
Confidence 344444555555422 257888999998 8888764 6788999999999999888886555889999999999999 88
Q ss_pred ccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc
Q 012641 260 SKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 260 ~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
+.+|..+. ++|++|++++|.+..+|... +.++++|++|++++|.... ....+..+.+
T Consensus 113 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~-----------~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~ 169 (330)
T 1xku_A 113 KELPEKMP--KTLQELRVHENEITKVRKSV-----------FNGLNQMIVVELGTNPLKS----------SGIENGAFQG 169 (330)
T ss_dssp SBCCSSCC--TTCCEEECCSSCCCBBCHHH-----------HTTCTTCCEEECCSSCCCG----------GGBCTTGGGG
T ss_pred CccChhhc--ccccEEECCCCcccccCHhH-----------hcCCccccEEECCCCcCCc----------cCcChhhccC
Confidence 88887766 78999999999888877542 6778888888888887632 2345567778
Q ss_pred cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCC-----------CccccCcccc------CCccCcccccCc
Q 012641 340 LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS-----------SLIDISSSSL------TTMMKGHFSQNL 402 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~-----------~l~~~~l~~~------~~~i~~~~l~~L 402 (459)
+++|+.|++..+....+ +... ...|+.|+++.+.+. .|+.+++... +.++ ..+++|
T Consensus 170 l~~L~~L~l~~n~l~~l---~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L 242 (330)
T 1xku_A 170 MKKLSYIRIADTNITTI---PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHL 242 (330)
T ss_dssp CTTCCEEECCSSCCCSC---CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTC
T ss_pred CCCcCEEECCCCccccC---Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--cCCCCC
Confidence 88888888765433322 2111 134555655433332 2333333321 1122 347899
Q ss_pred cEEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 403 QDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 403 ~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
++|++++|.+..+|. +..+++|++|++++ +.++.++.
T Consensus 243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~ 280 (330)
T 1xku_A 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGS 280 (330)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCS-SCCCCCCT
T ss_pred CEEECCCCcCccCChhhccCCCcCEEECCC-CcCCccCh
Confidence 999999998888885 88899999999998 56888776
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=1.1e-17 Score=165.51 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=49.1
Q ss_pred ccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L 275 (459)
.+++.+.+.++ .++.+|+. +..+++|++|++++|.+..+++..|..+++|++|++++| .+..+| ..++.+++|++|
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEE
Confidence 45556666555 55555432 344556666666666555555544556666666666666 555553 335556666666
Q ss_pred EcCCCCCcccCH
Q 012641 276 NLSNTNICELPI 287 (459)
Q Consensus 276 ~l~~~~l~~lp~ 287 (459)
++++|.+..+|.
T Consensus 123 ~L~~n~l~~l~~ 134 (390)
T 3o6n_A 123 VLERNDLSSLPR 134 (390)
T ss_dssp ECCSSCCCCCCT
T ss_pred ECCCCccCcCCH
Confidence 666665555443
No 10
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=2.4e-17 Score=157.58 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=156.0
Q ss_pred ccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCC
Q 012641 194 TASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQ 273 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~ 273 (459)
...+++++.|.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCC
Confidence 345678999999999 88888 578889999999999999888887 899999999999999 898887 599999999
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeCh
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTL 353 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 353 (459)
+|++++|.+..+|. +.++++|++|++++|.+.. ...++.+++|+.|+++.+..
T Consensus 111 ~L~l~~n~l~~~~~-------------l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-------------LAGLSNLQVLYLDLNQITN--------------ISPLAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EEECTTSCCCCCGG-------------GTTCTTCCEEECCSSCCCC--------------CGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCchh-------------hcCCCCCCEEECCCCccCc--------------CccccCCCCccEEEccCCcC
Confidence 99999999988764 7889999999999998632 12388899999999976544
Q ss_pred hhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCc
Q 012641 354 DSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCP 433 (459)
Q Consensus 354 ~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~ 433 (459)
..+..+ .....|+.|+++.+.+..+.. ...+++|++|++++|.+..++.+..+++|++|+++++
T Consensus 164 ~~~~~l----~~l~~L~~L~l~~n~l~~~~~-----------l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N- 227 (308)
T 1h6u_A 164 SDLTPL----ANLSKLTTLKADDNKISDISP-----------LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ- 227 (308)
T ss_dssp CCCGGG----TTCTTCCEEECCSSCCCCCGG-----------GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE-
T ss_pred CCChhh----cCCCCCCEEECCCCccCcChh-----------hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC-
Confidence 433221 222356777776666654421 2348899999999998888888999999999999984
Q ss_pred chhhhc
Q 012641 434 SLEEII 439 (459)
Q Consensus 434 ~l~~i~ 439 (459)
.+...+
T Consensus 228 ~i~~~~ 233 (308)
T 1h6u_A 228 TITNQP 233 (308)
T ss_dssp EEECCC
T ss_pred eeecCC
Confidence 455533
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=5.1e-17 Score=153.53 Aligned_cols=218 Identities=16% Similarity=0.162 Sum_probs=162.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+.+...+|.. ..+++++|.+.++ .+..++ ..+..+++|++|++++|.+..+++..+..+++|++|++++|..
T Consensus 15 ~~~c~~~~l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG-IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcC-CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 344556666666643 2468999999999 888886 4578899999999999988888666699999999999999932
Q ss_pred cccc-cccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKL-HVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~l-P~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
+..+ |..++.+++|++|++++|.+..++. .. +.++++|++|++++|.+ .......+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~-~~~l~~L~~L~l~~n~l------------~~~~~~~~ 149 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGP----------GL-FRGLAALQYLYLQDNAL------------QALPDDTF 149 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------TT-TTTCTTCCEEECCSSCC------------CCCCTTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECH----------hH-hhCCcCCCEEECCCCcc------------cccCHhHh
Confidence 8888 7789999999999999999887643 23 88999999999999987 33334557
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC 417 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~ 417 (459)
+.+++|+.|+++.+....+.. ........|+.|+++.+.+..+. +.++ ..+++|+.|++++|.+..+|.
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-------~~~~--~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVH-------PHAF--RDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEEC-------TTTT--TTCTTCCEEECCSSCCSCCCH
T ss_pred ccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccC-------HhHc--cCcccccEeeCCCCcCCcCCH
Confidence 889999999997553332211 01111234566666555544331 2222 247899999999998888874
Q ss_pred --cccCCCcceeecccCc
Q 012641 418 --ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 418 --l~~l~~L~~L~l~~c~ 433 (459)
+..+++|++|++++++
T Consensus 219 ~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHHTTCTTCCEEECCSSC
T ss_pred HHcccCcccCEEeccCCC
Confidence 8899999999999854
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=3e-17 Score=158.70 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=153.2
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.....+|... .+.++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 38 l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 38 VQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp EECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CC
T ss_pred EECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cC
Confidence 334444555555432 357888888888 777775 46778888888888888887776666888888888888888 88
Q ss_pred ccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc
Q 012641 260 SKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 260 ~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
..+|..+. ++|++|++++|.+..+|.. .+.++++|++|++++|.+.. ....+..+..
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~-----------~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~ 171 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKG-----------VFSGLRNMNCIEMGGNPLEN----------SGFEPGAFDG 171 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSG-----------GGSSCSSCCEEECCSCCCBG----------GGSCTTSSCS
T ss_pred CccCcccc--ccCCEEECCCCccCccCHh-----------HhCCCccCCEEECCCCcccc----------CCCCcccccC
Confidence 88887766 7888888888888776542 27889999999998887632 1234445555
Q ss_pred cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCC-----------CccccCcccc--CCccC--cccccCccE
Q 012641 340 LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS-----------SLIDISSSSL--TTMMK--GHFSQNLQD 404 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~-----------~l~~~~l~~~--~~~i~--~~~l~~L~~ 404 (459)
+ +|+.|+++.+.... ++... ...|+.|+++.+.+. .|..+++.+. ....+ ...+++|++
T Consensus 172 l-~L~~L~l~~n~l~~---l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTG---IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp C-CCSCCBCCSSBCSS---CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred C-ccCEEECcCCCCCc---cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 5 67777765443322 22111 134555655443332 2222333321 11111 135789999
Q ss_pred EEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 405 LSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 405 L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|++++|.+..+|. ++.+++|++|++++ +.++.++.
T Consensus 246 L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~ 281 (332)
T 2ft3_A 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGV 281 (332)
T ss_dssp EECCSSCCCBCCTTGGGCTTCCEEECCS-SCCCBCCT
T ss_pred EECCCCcCeecChhhhcCccCCEEECCC-CCCCccCh
Confidence 9999998889986 89999999999998 56888776
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=2.9e-17 Score=162.34 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=98.3
Q ss_pred EEEecCCCcccccc--ccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCC
Q 012641 180 LVFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQN 256 (459)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 256 (459)
.+...+.....+|. ...+++++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..++.+++|++|++++|
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 34444445555554 345678999999998 888876 36788999999999999888888877889999999999999
Q ss_pred CCcccccccc-cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 257 AKLSKLHVGE-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 257 ~~i~~lP~~i-~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
.+..+|..+ +.+++|++|++++|.+..++.. . +.++++|++|++++|.+.
T Consensus 128 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~-~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 128 -DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD----------T-FQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----------T-TSSCTTCCEEECCSSCCS
T ss_pred -ccCcCCHHHhcCCCCCcEEECCCCccCccChh----------h-ccCCCCCCEEECCCCcCC
Confidence 899998774 8899999999999988876432 2 677777777777777654
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=6.2e-17 Score=157.27 Aligned_cols=226 Identities=16% Similarity=0.222 Sum_probs=122.8
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
+...+.....++.....++++.+.+.++ .+..+++ +..+++|++|++++|.+..++. +..+++|++|++++| .+.
T Consensus 49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 49 LVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred EEEeCCccccchhhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence 3334445555555566677788888777 7777743 7777788888888777766653 777788888888887 777
Q ss_pred cccccccCCCCCCEEEcCCCC-CcccCHHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCC
Q 012641 261 KLHVGEGELIDLQYLNLSNTN-ICELPIGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 327 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 327 (459)
.+|. +..+++|++|++++|. +..++. +..+ +..++. +.++++|++|++++|.+..
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-------- 191 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-------- 191 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC--------
T ss_pred Cchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc--------
Confidence 7766 7777777777777774 333322 2211 111221 3344444445444444321
Q ss_pred CccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc---------ccCcccc-CCccC-c
Q 012641 328 GVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI---------DISSSSL-TTMMK-G 396 (459)
Q Consensus 328 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~---------~~~l~~~-~~~i~-~ 396 (459)
...+..+++|+.|++..+....... ......|+.|+++.+.+..+. .+++... -..++ .
T Consensus 192 ------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 261 (347)
T 4fmz_A 192 ------ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAV 261 (347)
T ss_dssp ------CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred ------cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhH
Confidence 1114444455555443322221111 111223444444333332221 1222110 00011 1
Q ss_pred ccccCccEEEEecCCCCCCcccccCCCcceeecccCc
Q 012641 397 HFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCP 433 (459)
Q Consensus 397 ~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~ 433 (459)
..+++|++|++++|.+..++.+..+++|++|++++|.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc
Confidence 3466777777777766677667777777777777753
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=1.1e-16 Score=155.51 Aligned_cols=219 Identities=15% Similarity=0.186 Sum_probs=137.6
Q ss_pred ccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCC
Q 012641 192 QETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELID 271 (459)
Q Consensus 192 ~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~ 271 (459)
.....+++++++.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+++
T Consensus 38 ~~~~~l~~L~~L~l~~~-~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGE-KVASI-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTT
T ss_pred ccchhcccccEEEEeCC-ccccc-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCc
Confidence 34445688999999999 88888 568889999999999999988887 899999999999999 999887 4999999
Q ss_pred CCEEEcCCCCCcccCHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 272 LQYLNLSNTNICELPIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 272 L~~L~l~~~~l~~lp~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
|++|++++|.+..+|. +..+ +..++ . +.++++|++|++.+|... ....+.
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~-~~~l~~L~~L~l~~~~~~--------------~~~~~~ 174 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-P-LSNMTGLNYLTVTESKVK--------------DVTPIA 174 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-G-GTTCTTCCEEECCSSCCC--------------CCGGGG
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-c-hhhCCCCcEEEecCCCcC--------------Cchhhc
Confidence 9999999999998875 2221 11111 1 444555555555544431 111255
Q ss_pred ccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC---------ccccCcccc--CCccCcccccCccEEEE
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS---------LIDISSSSL--TTMMKGHFSQNLQDLSI 407 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~---------l~~~~l~~~--~~~i~~~~l~~L~~L~L 407 (459)
.+++|+.|+++.+....+..+ .....|+.++++.+.+.. |+.+++.+. ....+...+++|++|++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 250 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI 250 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGG----GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred cCCCCCEEEccCCcccccccc----cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence 666666666643332222211 112234445443333222 222222221 01111234566777777
Q ss_pred ecCCCCCCcccccCCCcceeecccCcchhhh
Q 012641 408 INCSIKDLTCILYIPRLRFLFAKDCPSLEEI 438 (459)
Q Consensus 408 ~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i 438 (459)
++|.+..++.+..+++|++|++++| .+.++
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 251 GTNQISDINAVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred CCCccCCChhHhcCCCcCEEEccCC-ccCCC
Confidence 7666666666666777777777664 44444
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=165.63 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=108.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|... ...++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-c
Confidence 4555666677666532 367899999998 888875 56788999999999999888876666889999999999999 8
Q ss_pred ccccccc-ccCCCCCCEEEcCCCCCcccC-HHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC
Q 012641 259 LSKLHVG-EGELIDLQYLNLSNTNICELP-IGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS 324 (459)
Q Consensus 259 i~~lP~~-i~~L~~L~~L~l~~~~l~~lp-~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 324 (459)
+..+|.. ++.+++|++|++++|.+..++ ..+..+ +..++...+.++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------ 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT------ 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc------
Confidence 8888764 688999999999999887664 233322 23333333666677777777666652
Q ss_pred CCCCccccchhhhhccccCceeEEEE
Q 012641 325 SVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 325 ~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
......+.++++|+.|++..
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEES
T ss_pred ------ccChhHhcccCCCcEEeCCC
Confidence 22233455555566555554
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=5.4e-17 Score=169.78 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=102.8
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+.++..+|.... +.++.|.+.++ .+..+++ .+.++++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 15 ~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP-SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-P 91 (606)
T ss_dssp EEECTTSCCSSCCTTSC-TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred ceEccCCCcccCCCCCC-CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-c
Confidence 45566777777776433 78999999999 8888764 7889999999999999888887777899999999999999 8
Q ss_pred cccc-cccccCCCCCCEEEcCCCCCcccC-HHHHHh------------hh--hCCCCcCCCCCCCCEeeecCCCC
Q 012641 259 LSKL-HVGEGELIDLQYLNLSNTNICELP-IGIKKN------------LK--AIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 259 i~~l-P~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L------------l~--~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..+ |..++.+++|++|++++|.+..+| ..++.+ +. .+|.. ++++++|++|++++|.+
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence 8887 888999999999999999988776 333332 22 24444 55555555555555544
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=8.9e-17 Score=150.65 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=95.0
Q ss_pred ccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L 275 (459)
..++.|.+.++ .+..+++ .+..+++|++|++++|.+..++...|..+++|++|++++| .+..+|. .++.+++|++|
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 34555555555 5555542 3455555555555555555555554555555555555555 5555543 23555555555
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhh
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDS 355 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 355 (459)
++++|.+..+|.. .+.++++|++|++++|.+. ......++.+++|+.|++.
T Consensus 115 ~l~~n~l~~~~~~-----------~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~------ 165 (270)
T 2o6q_A 115 RLDRNQLKSLPPR-----------VFDSLTKLTYLSLGYNELQ------------SLPKGVFDKLTSLKELRLY------ 165 (270)
T ss_dssp ECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECC------
T ss_pred ECCCCccCeeCHH-----------HhCcCcCCCEEECCCCcCC------------ccCHhHccCCcccceeEec------
Confidence 5555555544321 1455555555555555541 1122224455555555543
Q ss_pred hhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 356 LNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 356 ~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
.+.+..+... .+ ..+++|++|++++|.++.+|. +..+++|++|++++++
T Consensus 166 --------------------~n~l~~~~~~-------~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 --------------------NNQLKRVPEG-------AF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------------------SSCCSCCCTT-------TT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------------CCcCcEeChh-------Hh--ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 2322222110 01 236788888888887777774 6778888888887643
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=1.4e-16 Score=165.20 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=80.2
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
..+...+..+..+|... .+.++.|.+.+| .+..++ ..+..+++|++|++++|.+..++++.|..+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 34555666666666533 267888888888 777775 46778888888888888887776666888888888888888
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccC--HHHHHh
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELP--IGIKKN 292 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L 292 (459)
.++.+|.. .+++|++|++++|.+..+| ..++.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhccc
Confidence 78888776 7788888888888777654 455544
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=2.1e-16 Score=148.50 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=164.2
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+.+.+.....+|... ...++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PI 88 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-cc
Confidence 444555666666532 257999999999 8888864 7888999999999999999888877999999999999999 88
Q ss_pred cccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
..+| ..++.+++|++|++++|.+..++. .. ++++++|++|++++|.+. ....+..++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~-~~~l~~L~~L~l~~n~l~-----------~~~l~~~~~ 146 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLEN----------FP-IGHLKTLKELNVAHNLIQ-----------SFKLPEYFS 146 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTT----------CC-CTTCTTCCEEECCSSCCC-----------CCCCCGGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCc----------hh-cccCCCCCEEECcCCccc-----------eecCchhhc
Confidence 8875 678999999999999999887653 12 889999999999999873 223577899
Q ss_pred ccccCceeEEEEeChhhhhhhhcchhHHhhhh----hhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCC
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSSSKLQSCVR----RQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKD 414 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~----~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~ 414 (459)
++++|+.|+++.+....+.. ........++ .|+++.+.+..+.. .. ....+|+.|++++|.++.
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n~l~~~~~--------~~--~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQP--------GA--FKEIRLKELALDTNQLKS 214 (276)
T ss_dssp GCTTCCEEECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSSCCCEECT--------TS--SCSCCEEEEECCSSCCSC
T ss_pred cCCCCCEEECCCCCCCcCCH--HHhhhhhhccccceeeecCCCcccccCc--------cc--cCCCcccEEECCCCceee
Confidence 99999999997654332210 1111222333 34445555543321 11 113489999999998888
Q ss_pred Ccc--cccCCCcceeecc------cCcchhhh
Q 012641 415 LTC--ILYIPRLRFLFAK------DCPSLEEI 438 (459)
Q Consensus 415 lp~--l~~l~~L~~L~l~------~c~~l~~i 438 (459)
+|. +..+++|++|+++ .|+.++.+
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 885 6889999999999 56655543
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=5.9e-17 Score=169.20 Aligned_cols=125 Identities=20% Similarity=0.233 Sum_probs=88.8
Q ss_pred EEecCCCcccccc--ccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 181 VFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
+...+.....+|. ...++.++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..|+.+++|++|+|++|
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 133 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN- 133 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-
Confidence 3334444444443 234567888888888 7777653 6777888888888888777777776788888888888888
Q ss_pred Ccccccccc-cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 258 KLSKLHVGE-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 258 ~i~~lP~~i-~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
.+..+|..+ +.+++|++|++++|.+..+|. .. ++++++|++|++++|.+.
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIED----------DT-FQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT----------TT-TTTCTTCCEEECTTSCCS
T ss_pred CCCCCCHHHhccCCCCCEEEeeCCcCCCCCh----------hh-hhcCCcCcEEECcCCCCC
Confidence 788887664 788888888888887776543 22 677777777777777654
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=163.45 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=66.5
Q ss_pred EecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 182 FQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
-..+..+..+|.... +++++|.++++ .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|++++| .++
T Consensus 6 ~ls~n~l~~ip~~~~-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 82 (520)
T 2z7x_B 6 DRSKNGLIHVPKDLS-QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLV 82 (520)
T ss_dssp ECTTSCCSSCCCSCC-TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCC
T ss_pred ecCCCCccccccccc-ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-cee
Confidence 334445555554322 56777777777 666654 34566777777777777666665555777777777777777 666
Q ss_pred cccccccCCCCCCEEEcCCCCCcc--cCHHHHHh
Q 012641 261 KLHVGEGELIDLQYLNLSNTNICE--LPIGIKKN 292 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L 292 (459)
.+|.. .+++|++|++++|.+.. +|..++.+
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccC
Confidence 66665 66667777777666654 34555443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=6.5e-17 Score=163.09 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=102.2
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCcccc-CCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+.+.+.+...+|. -.++++.|.+.++ .+..+ +..+.++++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n- 89 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-
Confidence 45566667777776 2378999999999 88876 467889999999999999765 676666899999999999999
Q ss_pred Ccccc-cccccCCCCCCEEEcCCCCCcc-cCHH--HHHh------------hhhC-CCCcCCCCCCCCEeeecCCCCC
Q 012641 258 KLSKL-HVGEGELIDLQYLNLSNTNICE-LPIG--IKKN------------LKAI-PAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 258 ~i~~l-P~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L------------l~~l-p~~~i~~L~~L~~L~l~~~~~~ 318 (459)
.+..+ |..++.+++|++|++++|.+.. +|.. ++.+ +..+ |..++.++++|++|++++|.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88776 7889999999999999998874 3332 3332 3333 4333667777777777777653
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=9.9e-18 Score=160.69 Aligned_cols=199 Identities=17% Similarity=0.102 Sum_probs=112.5
Q ss_pred ccccccceEEEeec-CCCcc-ccCCCCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCC
Q 012641 194 TASWNEAVRVSLWR-SPSID-SLSPTPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGEL 269 (459)
Q Consensus 194 ~~~~~~~r~l~l~~-~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L 269 (459)
...++.++.|.+.+ + .+. .+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..++.+
T Consensus 72 l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l 148 (313)
T 1ogq_A 72 LANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISSL 148 (313)
T ss_dssp GGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred HhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhcC
Confidence 34455666666663 4 333 44455566666666666666655 34443 666666666666666 555 456666666
Q ss_pred CCCCEEEcCCCCCc-ccCHHHHHhhhhCCCCcCCCCC-CCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 270 IDLQYLNLSNTNIC-ELPIGIKKNLKAIPAGMLSSLL-SLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 270 ~~L~~L~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
++|++|++++|.+. .+|. . +.++. +|++|++++|.+ ....+..++.++ |+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~-----------~-l~~l~~~L~~L~L~~N~l------------~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPD-----------S-YGSFSKLFTSMTISRNRL------------TGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSCCEEECCG-----------G-GGCCCTTCCEEECCSSEE------------EEECCGGGGGCC-CSEEE
T ss_pred CCCCeEECcCCcccCcCCH-----------H-HhhhhhcCcEEECcCCee------------eccCChHHhCCc-ccEEE
Confidence 66666666666665 4443 4 66776 788888887776 445666677776 77777
Q ss_pred EEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC-CCcc-cccCCCcc
Q 012641 348 VIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK-DLTC-ILYIPRLR 425 (459)
Q Consensus 348 l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~-~lp~-l~~l~~L~ 425 (459)
++.+..... .+........|+.|+++.+.+... +.. ...+++|++|++++|.+. .+|. ++.+++|+
T Consensus 204 Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~--------~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 204 LSRNMLEGD--ASVLFGSDKNTQKIHLAKNSLAFD--------LGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp CCSSEEEEC--CGGGCCTTSCCSEEECCSSEECCB--------GGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred CcCCcccCc--CCHHHhcCCCCCEEECCCCceeee--------cCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 754322211 111111223355555544433211 000 123566777777766544 4443 66667777
Q ss_pred eeecccC
Q 012641 426 FLFAKDC 432 (459)
Q Consensus 426 ~L~l~~c 432 (459)
+|+++++
T Consensus 272 ~L~Ls~N 278 (313)
T 1ogq_A 272 SLNVSFN 278 (313)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 7777664
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.8e-16 Score=150.19 Aligned_cols=195 Identities=22% Similarity=0.221 Sum_probs=133.9
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
..+++.+.+.++ .+..+|..+. ++++.|++++|.+..+++..|..+++|++|++++| .++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 356777777777 7777765443 67888888888777777666888888888888888 78877764 7788888888
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhh
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSL 356 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 356 (459)
+++|.+..+|. . +.++++|++|++++|.+ ....+..+..+++|+.|+++.+....+
T Consensus 84 Ls~N~l~~l~~-----------~-~~~l~~L~~L~l~~N~l------------~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 84 LSHNQLQSLPL-----------L-GQTLPALTVLDVSFNRL------------TSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp CCSSCCSSCCC-----------C-TTTCTTCCEEECCSSCC------------CCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCcCCcCch-----------h-hccCCCCCEEECCCCcC------------cccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 88888776654 2 67777888888887776 223345567777788877754433221
Q ss_pred hhhhcc-hhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccC
Q 012641 357 NKLKSS-SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDC 432 (459)
Q Consensus 357 ~~l~~~-~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c 432 (459)
+.. ......|+.|+++.+.++.+....+ ..+++|+.|+|++|.++.+|. +..+++|+.|++++.
T Consensus 140 ---~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---------~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 140 ---PPGLLTPTPKLEKLSLANNNLTELPAGLL---------NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ---CTTTTTTCTTCCEEECTTSCCSCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred ---ChhhcccccCCCEEECCCCcCCccCHHHh---------cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 111 1122345566665555554422111 237899999999998888885 777889999999863
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=4.7e-17 Score=169.93 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=110.2
Q ss_pred ccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCC
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQ 273 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~ 273 (459)
.+.+++.+.+.++ .+..+|+. +..+++|++|++++|.+..+++..|+.+++|++|+|++| .+..+|. .++.+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 4567899999998 88888644 467899999999999998888766999999999999999 8888865 469999999
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
+|++++|.+..+|.+ +++++++|++|++++|.+ ....+..++.+++|+.|+++.+.
T Consensus 127 ~L~L~~n~l~~l~~~-----------~~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 127 VLVLERNDLSSLPRG-----------IFHNTPKLTTLSMSNNNL------------ERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CBCCTTTTTTCTTCCEEECTTSC
T ss_pred EEEeeCCCCCCCCHH-----------HhccCCCCCEEEeeCCcC------------CCCChhhhhcCCcCcEEECcCCC
Confidence 999999998877653 268999999999999987 44455677888888888886543
No 27
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=9.1e-17 Score=147.70 Aligned_cols=205 Identities=12% Similarity=0.145 Sum_probs=143.2
Q ss_pred ccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeeccc-ccccchhHHhcCCCccEEEccC-CCCccccc-
Q 012641 188 SIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTM-IKEFENKFFQSMHALRVLDSSQ-NAKLSKLH- 263 (459)
Q Consensus 188 ~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~L~~-~~~i~~lP- 263 (459)
...+|. -...++.+.+.++ .+..+++ .+..+++|++|++++|. +..+++..|..+++|++|++++ | .++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECT
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCH
Confidence 455555 2357899999999 8888864 67789999999999996 8888887688999999999998 8 888886
Q ss_pred ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCC---EeeecCC-CCCCcCCCCCCCCccccchhhhhc
Q 012641 264 VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLR---VFSWVPT-RYAGFNYGSSVPGVTVLLLEELES 339 (459)
Q Consensus 264 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 339 (459)
..++.+++|++|++++|.++.+|. +.++++|+ +|++++| .+ .......+..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-------------~~~l~~L~~L~~L~l~~N~~l------------~~i~~~~~~~ 153 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-------------LTKVYSTDIFFILEITDNPYM------------TSIPVNAFQG 153 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-------------CTTCCBCCSEEEEEEESCTTC------------CEECTTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-------------cccccccccccEEECCCCcch------------hhcCcccccc
Confidence 467889999999999998887764 56666666 9999988 65 3333445778
Q ss_pred cccCc-eeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC-CCCccccCccccCCccCcccc-cCccEEEEecCCCCCCc
Q 012641 340 LKHLQ-EISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE-LSSLIDISSSSLTTMMKGHFS-QNLQDLSIINCSIKDLT 416 (459)
Q Consensus 340 L~~L~-~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~-l~~l~~~~l~~~~~~i~~~~l-~~L~~L~L~~~~l~~lp 416 (459)
+++|+ .|+++.+....+ +...-....|+.|+++.+. +..+....+ ..+ ++|+.|++++|.++.+|
T Consensus 154 l~~L~~~L~l~~n~l~~i---~~~~~~~~~L~~L~L~~n~~l~~i~~~~~---------~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSV---QGYAFNGTKLDAVYLNKNKYLTVIDKDAF---------GGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TBSSEEEEECCSCCCCEE---CTTTTTTCEEEEEECTTCTTCCEECTTTT---------TTCSBCCSEEECTTCCCCCCC
T ss_pred hhcceeEEEcCCCCCccc---CHhhcCCCCCCEEEcCCCCCcccCCHHHh---------hccccCCcEEECCCCccccCC
Confidence 88888 888864433322 1111001346666665542 443321111 125 77888888888777776
Q ss_pred ccccCCCcceeecccCcc
Q 012641 417 CILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 417 ~l~~l~~L~~L~l~~c~~ 434 (459)
.- .+++|+.|+++++..
T Consensus 222 ~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 222 SK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CT-TCTTCSEEECTTC--
T ss_pred hh-HhccCceeeccCccC
Confidence 54 577888888877654
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=6.4e-17 Score=155.03 Aligned_cols=199 Identities=14% Similarity=0.116 Sum_probs=151.8
Q ss_pred ccceEEEeecCCCcc---ccCCCCCCCCcceeeeeec-cccc-ccchhHHhcCCCccEEEccCCCCcc-cccccccCCCC
Q 012641 198 NEAVRVSLWRSPSID---SLSPTPPCCPRLLTLLVRY-TMIK-EFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELID 271 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~ 271 (459)
..++.+.+.++ .+. .+|..+..+++|++|++++ |.+. .+|.. ++.+++|++|++++| .+. .+|..++.+++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTT
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCC
Confidence 47999999999 776 5778889999999999995 7665 56666 999999999999999 887 78999999999
Q ss_pred CCEEEcCCCCCc-ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccc-cCceeEEE
Q 012641 272 LQYLNLSNTNIC-ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK-HLQEISVI 349 (459)
Q Consensus 272 L~~L~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~ 349 (459)
|++|++++|.+. .+|. . +.++++|++|++++|.+ .+..+..++.+. +|+.|++.
T Consensus 127 L~~L~Ls~N~l~~~~p~-----------~-~~~l~~L~~L~L~~N~l------------~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPP-----------S-ISSLPNLVGITFDGNRI------------SGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp CCEEECCSSEEESCCCG-----------G-GGGCTTCCEEECCSSCC------------EEECCGGGGCCCTTCCEEECC
T ss_pred CCEEeCCCCccCCcCCh-----------H-HhcCCCCCeEECcCCcc------------cCcCCHHHhhhhhcCcEEECc
Confidence 999999999887 5554 3 88899999999999987 556788899998 99999987
Q ss_pred EeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC-CCcccccCCCcceee
Q 012641 350 ILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK-DLTCILYIPRLRFLF 428 (459)
Q Consensus 350 ~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~-~lp~l~~l~~L~~L~ 428 (459)
.+.... .++....... |+.|+++.+.+.... +..+ ..+++|+.|++++|.+. .+|.+..+++|++|+
T Consensus 183 ~N~l~~--~~~~~~~~l~-L~~L~Ls~N~l~~~~-------~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 183 RNRLTG--KIPPTFANLN-LAFVDLSRNMLEGDA-------SVLF--GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250 (313)
T ss_dssp SSEEEE--ECCGGGGGCC-CSEEECCSSEEEECC-------GGGC--CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred CCeeec--cCChHHhCCc-ccEEECcCCcccCcC-------CHHH--hcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence 543321 1111111111 666666555443221 1111 34889999999999665 455588899999999
Q ss_pred cccCcchh
Q 012641 429 AKDCPSLE 436 (459)
Q Consensus 429 l~~c~~l~ 436 (459)
++++. +.
T Consensus 251 Ls~N~-l~ 257 (313)
T 1ogq_A 251 LRNNR-IY 257 (313)
T ss_dssp CCSSC-CE
T ss_pred CcCCc-cc
Confidence 99854 44
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=2.2e-16 Score=152.39 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=157.0
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEc
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 277 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l 277 (459)
.++.+.+.++ .+..+|..+. +++++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 5778888888 8888865443 78999999999999998877999999999999999 89888 888999999999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
++|.++.+|.. +. ++|++|++++|.+ .......+.++++|+.|++..+......
T Consensus 108 s~n~l~~l~~~------------~~--~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 108 SKNQLKELPEK------------MP--KTLQELRVHENEI------------TKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp CSSCCSBCCSS------------CC--TTCCEEECCSSCC------------CBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCCcCCccChh------------hc--ccccEEECCCCcc------------cccCHhHhcCCccccEEECCCCcCCccC
Confidence 99999887643 33 7999999999987 4445667899999999999765443222
Q ss_pred hhhcchhHHhhhhhhhccCCCCCCc--------cccCcccc------CCccCcccccCccEEEEecCCCCCCc--ccccC
Q 012641 358 KLKSSSKLQSCVRRQVMGLPELSSL--------IDISSSSL------TTMMKGHFSQNLQDLSIINCSIKDLT--CILYI 421 (459)
Q Consensus 358 ~l~~~~~l~~~L~~L~l~~~~l~~l--------~~~~l~~~------~~~i~~~~l~~L~~L~L~~~~l~~lp--~l~~l 421 (459)
...........|+.|+++.+.+..+ +.+++... +.++ ..+++|++|++++|.+..++ .+..+
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred cChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeChhhccCC
Confidence 2222223334577777766555443 22333321 1122 35789999999999777766 37889
Q ss_pred CCcceeecccCcchhhhcc
Q 012641 422 PRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 422 ~~L~~L~l~~c~~l~~i~~ 440 (459)
++|++|+++++ ++..+|.
T Consensus 240 ~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp TTCCEEECCSS-CCSSCCT
T ss_pred CCCCEEECCCC-cCccCCh
Confidence 99999999985 6776665
No 30
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.68 E-value=3.9e-17 Score=184.53 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=120.3
Q ss_pred CccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCC-----CCcccchhhhhhhhcCCCchhH
Q 012641 14 HPEIRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFE-----GMGTRVFPLLKFSYDRLTSETH 88 (459)
Q Consensus 14 ~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~-----~~~~~i~~~l~~sy~~L~~~~l 88 (459)
.+.+++++++|+++|+|+||||+++|++|+.+. ..|+.+++.+....+..- ...+.+..++.+||+.||+ ++
T Consensus 303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~ 379 (1249)
T 3sfz_A 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DI 379 (1249)
T ss_dssp STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TT
T ss_pred hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HH
Confidence 345567899999999999999999999999843 589999999977654311 1113589999999999999 69
Q ss_pred HHHhhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHHH
Q 012641 89 KTCFLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMAL 168 (459)
Q Consensus 89 k~cfl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~~ 168 (459)
|.||+|||+||+++.|+++.++++|.++ ++.++.++++|++++|++... ++....|+||+++|++++
T Consensus 380 ~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~-~~~~~~~~~h~l~~~~~~ 446 (1249)
T 3sfz_A 380 KDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNR-NGKSFCYYLHDLQVDFLT 446 (1249)
T ss_dssp HHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEE-SSSSEEEECCHHHHHHHH
T ss_pred HHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEec-CCCceEEEecHHHHHHHH
Confidence 9999999999999999999999999665 356788999999999998654 233456999999999999
Q ss_pred HHHhcc
Q 012641 169 WIASSQ 174 (459)
Q Consensus 169 ~~~~~~ 174 (459)
..+.++
T Consensus 447 ~~~~~~ 452 (1249)
T 3sfz_A 447 EKNRSQ 452 (1249)
T ss_dssp HHTGGG
T ss_pred hhhhHH
Confidence 886654
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=1.7e-16 Score=165.93 Aligned_cols=152 Identities=18% Similarity=0.101 Sum_probs=106.6
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+.+...+|... ...++.|.+.++ .+..++ ..+.++++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-P 92 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred eEECCCCCcccCcCCC-CCcCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-c
Confidence 4555666677776532 257899999999 888874 57888999999999999888887666999999999999999 8
Q ss_pred cccc-cccccCCCCCCEEEcCCCCCcccC-HHHHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC
Q 012641 259 LSKL-HVGEGELIDLQYLNLSNTNICELP-IGIKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS 324 (459)
Q Consensus 259 i~~l-P~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 324 (459)
+..+ |..++.+++|++|++++|.+..++ ..++.+ +..++...+..+++|++|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l------- 165 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI------- 165 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC-------
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc-------
Confidence 8776 778899999999999999888763 222222 2222111133355555555555544
Q ss_pred CCCCccccchhhhhccccCcee
Q 012641 325 SVPGVTVLLLEELESLKHLQEI 346 (459)
Q Consensus 325 ~~~~~~~~~~~~l~~L~~L~~L 346 (459)
....+..++.+++|+.+
T Consensus 166 -----~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 166 -----HYLSKEDMSSLQQATNL 182 (606)
T ss_dssp -----CEECHHHHHTTTTCCSE
T ss_pred -----cccChhhhhhhccccee
Confidence 33345667777777733
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=1.4e-16 Score=168.98 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=98.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+.+.+..+..+|.... +++++|.+.++ .+..+++ .+.++++|++|++++|.+..+++..|+.+++|++|++++| .
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-E 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred eeECCCCCccccccccC-CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-c
Confidence 45556667777775332 78999999999 8888863 4788999999999999988888777999999999999999 9
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+..+|. .++.+++|++|++++|.+..+|.. . ++++++|++|++++|.+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~-~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNN----------P-FVKQKNLITLDLSHNGL 133 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSC----------T-TTTCTTCCEEECCSSCC
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChh----------H-ccccCCCCEEECCCCcc
Confidence 999986 589999999999999998877631 1 55566666666665554
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.68 E-value=2.5e-16 Score=159.44 Aligned_cols=127 Identities=13% Similarity=0.256 Sum_probs=93.3
Q ss_pred ecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 183 QETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
..+.....++.....++++.|.+.++ .+..+++ +..+++|++|++++|.+..+++ +..+++|++|++++| .+..+
T Consensus 53 l~~~~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~ 127 (466)
T 1o6v_A 53 ADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDI 127 (466)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCCCccCcchhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCC
Confidence 34444555565666778888888888 7877744 7888888888888888877776 888888888888888 88888
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHh-----------hhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKN-----------LKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-----------l~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
|. ++.+++|++|++++|.+..+|. +..+ +..++. +.++++|++|++++|...
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchh--hccCCCCCEEECcCCcCC
Confidence 76 8888888888888888777653 3332 122232 667777888888777653
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=2.3e-16 Score=149.01 Aligned_cols=201 Identities=15% Similarity=0.103 Sum_probs=151.9
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~ 279 (459)
+.+...++ .+..+|..+ .++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCC
Confidence 55667776 788885433 479999999999999999877999999999999999 89888 78899999999999999
Q ss_pred CC-CcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 280 TN-ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 280 ~~-l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
|. +..++. .. +.++++|++|++++|.+ ....+..+..+++|+.|++..+....+..
T Consensus 90 n~~l~~~~~----------~~-~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 90 NAQLRSVDP----------AT-FHGLGRLHTLHLDRCGL------------QELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CTTCCCCCT----------TT-TTTCTTCCEEECTTSCC------------CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccccCH----------HH-hcCCcCCCEEECCCCcC------------CEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 97 877632 23 88999999999999987 33456678889999999997554332211
Q ss_pred hhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCC-c-ccccCCCcceeecccCcchh
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL-T-CILYIPRLRFLFAKDCPSLE 436 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l-p-~l~~l~~L~~L~l~~c~~l~ 436 (459)
........|+.|+++.+.+..+... ++ ..+++|++|++++|.+..+ | .++.+++|+.|++++ +++.
T Consensus 147 --~~~~~l~~L~~L~l~~n~l~~~~~~-------~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~ 214 (285)
T 1ozn_A 147 --DTFRDLGNLTHLFLHGNRISSVPER-------AF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLS 214 (285)
T ss_dssp --TTTTTCTTCCEEECCSSCCCEECTT-------TT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred --hHhccCCCccEEECCCCcccccCHH-------Hh--cCccccCEEECCCCcccccCHhHccCcccccEeeCCC-CcCC
Confidence 1112223466676666555444211 11 2378999999999977776 3 488999999999998 4666
Q ss_pred hhcc
Q 012641 437 EIIA 440 (459)
Q Consensus 437 ~i~~ 440 (459)
.++.
T Consensus 215 ~~~~ 218 (285)
T 1ozn_A 215 ALPT 218 (285)
T ss_dssp CCCH
T ss_pred cCCH
Confidence 6654
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=2.4e-16 Score=152.29 Aligned_cols=210 Identities=17% Similarity=0.153 Sum_probs=156.3
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEc
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 277 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l 277 (459)
.++.+.+.++ .+..+|..+ .++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 5788899888 888887555 379999999999999888767999999999999999 89887 788999999999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
++|.+..+|.. +. ++|++|++++|.+ .......+..+++|+.|++..+......
T Consensus 110 ~~n~l~~l~~~------------~~--~~L~~L~l~~n~i------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 110 SKNHLVEIPPN------------LP--SSLVELRIHDNRI------------RKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp CSSCCCSCCSS------------CC--TTCCEEECCSSCC------------CCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCCcCCccCcc------------cc--ccCCEEECCCCcc------------CccCHhHhCCCccCCEEECCCCccccCC
Confidence 99999887643 33 7999999999987 3334456889999999999765443221
Q ss_pred hhhcchhHHhhhhhhhccCCCCCCc--------cccCcccc-CCccC---cccccCccEEEEecCCCCCCcc--cccCCC
Q 012641 358 KLKSSSKLQSCVRRQVMGLPELSSL--------IDISSSSL-TTMMK---GHFSQNLQDLSIINCSIKDLTC--ILYIPR 423 (459)
Q Consensus 358 ~l~~~~~l~~~L~~L~l~~~~l~~l--------~~~~l~~~-~~~i~---~~~l~~L~~L~L~~~~l~~lp~--l~~l~~ 423 (459)
..+...... .|+.|+++.+.+..+ +.+++... -..++ ...+++|++|++++|.+..++. ++.+++
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred CCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 111111111 577777765555433 33333331 01111 1357899999999998877764 888999
Q ss_pred cceeecccCcchhhhcc
Q 012641 424 LRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 424 L~~L~l~~c~~l~~i~~ 440 (459)
|++|++++ ++++.+|.
T Consensus 243 L~~L~L~~-N~l~~lp~ 258 (332)
T 2ft3_A 243 LRELHLDN-NKLSRVPA 258 (332)
T ss_dssp CCEEECCS-SCCCBCCT
T ss_pred CCEEECCC-CcCeecCh
Confidence 99999998 46777766
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=159.34 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=52.2
Q ss_pred ccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCC
Q 012641 196 SWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQ 273 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~ 273 (459)
...+++.|.+.+| .+..+++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|+
T Consensus 78 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 78 NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCC
T ss_pred CCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCC
Confidence 3455666666665 5555542 2455666666666666555554444566666666666666 55544 34556666666
Q ss_pred EEEcCCCCCcccCH
Q 012641 274 YLNLSNTNICELPI 287 (459)
Q Consensus 274 ~L~l~~~~l~~lp~ 287 (459)
+|++++|.+..+|.
T Consensus 156 ~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 156 QLTLEKCNLTSIPT 169 (477)
T ss_dssp EEEEESCCCSSCCH
T ss_pred EEECCCCcCcccCh
Confidence 66666666666554
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=7.4e-16 Score=155.34 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred CccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccc
Q 012641 187 KSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 187 ~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
.....|.....++++.|.+.++ .+..++ +..+++|++|++++|.+..++ ++.+++|++|++++| .++.+| +
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~ 123 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--V 123 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--C
T ss_pred CcccChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--C
Confidence 3333444444556666666666 555552 555666666666666555553 556666666666666 565554 5
Q ss_pred cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCcee
Q 012641 267 GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 346 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 346 (459)
+.+++|++|++++|.++.+| ++++++|++|++++|... ... .++.+++|+.|
T Consensus 124 ~~l~~L~~L~l~~N~l~~l~--------------l~~l~~L~~L~l~~n~~~------------~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEID--------------VSHNTQLTELDCHLNKKI------------TKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECTTSCCSCCC--------------CTTCTTCCEEECTTCSCC------------CCC--CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCccceec--------------cccCCcCCEEECCCCCcc------------ccc--ccccCCcCCEE
Confidence 66666666666666655543 455566666666655321 111 34556666666
Q ss_pred EEEEe
Q 012641 347 SVIIL 351 (459)
Q Consensus 347 ~l~~~ 351 (459)
+++.+
T Consensus 176 ~ls~n 180 (457)
T 3bz5_A 176 DCSFN 180 (457)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 66543
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=153.85 Aligned_cols=211 Identities=17% Similarity=0.156 Sum_probs=140.2
Q ss_pred EEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCCCC
Q 012641 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTN 281 (459)
Q Consensus 203 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~ 281 (459)
....++ .+..+|..+. ++|++|++++|.+..++...+..+++|++|++++| .++.+ |..++.+++|++|++++|.
T Consensus 36 c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc
Confidence 566677 8888865444 58999999999999999877999999999999999 99888 4679999999999999999
Q ss_pred CcccCHH-HHHh------------hhhCCC-CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 282 ICELPIG-IKKN------------LKAIPA-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 282 l~~lp~~-i~~L------------l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
++.+|.. ++.+ +..+|. ..+.++++|++|++++|... ....+..++.+++|+.|+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-----------~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-----------TKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------CEECTTTTTTCCEEEEEE
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-----------cccCHHHccCCCCCCEEE
Confidence 9999876 3433 455665 33666777777777666321 223345666777777777
Q ss_pred EEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCC------------
Q 012641 348 VIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL------------ 415 (459)
Q Consensus 348 l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l------------ 415 (459)
+..+..... .+........|+.|+++.+.+..+.... ...+++|+.|++++|.++.+
T Consensus 181 l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~---------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 181 IDASDLQSY--EPKSLKSIQNVSHLILHMKQHILLLEIF---------VDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp EEETTCCEE--CTTTTTTCSEEEEEEEECSCSTTHHHHH---------HHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCCCcCcc--CHHHHhccccCCeecCCCCccccchhhh---------hhhcccccEEECCCCccccccccccccccccc
Confidence 765433221 0111111223555555444433221100 01255666666666644432
Q ss_pred --------------------c-ccccCCCcceeecccCcchhhhcc
Q 012641 416 --------------------T-CILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 416 --------------------p-~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
| +++.+++|++|++++ ++++.++.
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~ 294 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPD 294 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCT
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCH
Confidence 3 256789999999998 46777766
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1.4e-15 Score=142.69 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=101.2
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELID 271 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~ 271 (459)
....++.++.+.+.++ .+..+ +.+..+++|++|++++|.+..++. +..+++|++|++++| .++.+|.. ++.+++
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNS-DIKSV-QGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTS-CCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCCC-Ccccc-cccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcC
Confidence 3344577888888888 77777 667888899999999888777653 888899999999999 88887654 688899
Q ss_pred CCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 272 LQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 272 L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
|++|++++|.+..+|.. .++++++|++|++++|.+ ....+..++.+++|+.|+++.+
T Consensus 111 L~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~L~~n~l------------~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDG-----------VFDKLTNLTYLNLAHNQL------------QSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CCEEECTTSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHH-----------HhccCCCCCEEECCCCcc------------CccCHHHhccCccCCEEECCCC
Confidence 99999999988776542 278888999999988876 3333445677888888887644
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.9e-16 Score=170.36 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=102.1
Q ss_pred ccccccceEEEeecCCCccc------------------cCCCCC--CCCcceeeeeecccc-cccchhHHhcCCCccEEE
Q 012641 194 TASWNEAVRVSLWRSPSIDS------------------LSPTPP--CCPRLLTLLVRYTMI-KEFENKFFQSMHALRVLD 252 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~l~~Lr~L~ 252 (459)
...+++++.|.+.+| .+.. +|..+. ++++|++|++++|.+ ..+|.. ++.+++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence 445678888888888 7776 777777 888888888888854 456655 88888888888
Q ss_pred ccCCCC-ccc--ccccccCCC-------CCCEEEcCCCCCcccCH--HHHHh------------hhhCCCCcCCCCCCCC
Q 012641 253 SSQNAK-LSK--LHVGEGELI-------DLQYLNLSNTNICELPI--GIKKN------------LKAIPAGMLSSLLSLR 308 (459)
Q Consensus 253 L~~~~~-i~~--lP~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~L------------l~~lp~~~i~~L~~L~ 308 (459)
+++| . ++. +|..++.+. +|++|++++|.+..+|. .++.+ +..+| . ++++++|+
T Consensus 522 Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C-CCTTSEES
T ss_pred CcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h-hcCCCcce
Confidence 8888 5 663 777666555 88888888888888887 66665 45677 4 78888888
Q ss_pred EeeecCCCCCCcCCCCCCCCccccchhhhhcccc-CceeEEEEe
Q 012641 309 VFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKH-LQEISVIIL 351 (459)
Q Consensus 309 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~ 351 (459)
+|++++|.+. ..+..+.++++ |+.|+++.+
T Consensus 599 ~L~Ls~N~l~-------------~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 599 DLKLDYNQIE-------------EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp EEECCSSCCS-------------CCCTTSCEECTTCCEEECCSS
T ss_pred EEECcCCccc-------------cchHHHhhccccCCEEECcCC
Confidence 8888887763 24445555655 666665443
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=5.8e-16 Score=146.75 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=126.4
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
....+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++.+++|
T Consensus 41 ~~~~l~~L~~L~l~~~-~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 41 TQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKL 114 (291)
T ss_dssp CHHHHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTC
T ss_pred chhhcCcccEEEccCC-CcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCC
Confidence 3345578999999998 88888 567888999999999998888877 889999999999999 8888776 8999999
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
++|++++|.+..+|. +.++++|++|++++|.+.. +..++.+++|+.|+++.+.
T Consensus 115 ~~L~L~~n~i~~~~~-------------l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 115 KSLSLEHNGISDING-------------LVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp CEEECTTSCCCCCGG-------------GGGCTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSC
T ss_pred CEEECCCCcCCCChh-------------hcCCCCCCEEEccCCcCCc--------------chhhccCCCCCEEEccCCc
Confidence 999999999887753 7788999999999988632 2577888888888886443
Q ss_pred hhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeeccc
Q 012641 353 LDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431 (459)
Q Consensus 353 ~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~ 431 (459)
...+.. ...+++|+.|++++|.++.+|.+..+++|+.|++++
T Consensus 168 l~~~~~-------------------------------------l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 168 ISDIVP-------------------------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp CCCCGG-------------------------------------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred cccchh-------------------------------------hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence 222111 012455666666666555555555566666666655
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.1e-15 Score=154.19 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=117.5
Q ss_pred ccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCC
Q 012641 194 TASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELID 271 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~ 271 (459)
...+++++.|.+.+| .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .+..+++
T Consensus 95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred cCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCc
Confidence 345577888888888 777765 55677888888888888887887777778888888888888 7777764 5677778
Q ss_pred CCEEEcCCC-CCcccCHH-HHHh------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 272 LQYLNLSNT-NICELPIG-IKKN------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 272 L~~L~l~~~-~l~~lp~~-i~~L------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
|++|++++| .+..+|.. +..+ +..+|. +..+++|++|++++|.+ ....+..+
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l------------~~~~~~~~ 238 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHF------------PEIRPGSF 238 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCC------------SEECGGGG
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcC------------cccCcccc
Confidence 888888774 55555532 1111 223332 55555666666665554 33345566
Q ss_pred hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC
Q 012641 338 ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
.++++|+.|++..+....+. +........|+.|+++.+.+..+.... + ..+++|+.|+|++|.+.
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~-------~--~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNNLSSLPHDL-------F--TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSCCCTTS-------S--TTCTTCCEEECCSSCEE
T ss_pred cCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCCcCCccChHH-------h--ccccCCCEEEccCCCcC
Confidence 66677777666433222110 001111223455555444444332111 1 34789999999999433
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=1.9e-16 Score=166.48 Aligned_cols=87 Identities=11% Similarity=0.173 Sum_probs=50.2
Q ss_pred ccceEEEeecCCCccccCC--CCCCCCcceeeeeeccccc-ccchhHHhcCCCccEEEccCCCCcccccccccCCCC-CC
Q 012641 198 NEAVRVSLWRSPSIDSLSP--TPPCCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELID-LQ 273 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~-L~ 273 (459)
++++.|.+.+| .+..+|. .+..+++|++|++++|.+. .+| . ++.+++|++|++++| .+..+|..++.+++ |+
T Consensus 305 ~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYN-QITEIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSS-EEEECCTTSEEECTTCC
T ss_pred CCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCC-ccccccHhhhhhcccCc
Confidence 45555555555 5555544 4555566666666665555 555 2 555566666666666 55566666666666 66
Q ss_pred EEEcCCCCCcccCHH
Q 012641 274 YLNLSNTNICELPIG 288 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~ 288 (459)
+|++++|.+..+|..
T Consensus 381 ~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 381 NLSFAHNKLKYIPNI 395 (636)
T ss_dssp EEECCSSCCSSCCSC
T ss_pred EEEccCCcCcccchh
Confidence 666666666655543
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=4.7e-15 Score=160.92 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=114.3
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCcccc-CCCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQN 256 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~ 256 (459)
..+.+.+..+..+|. -.++++.|.+.+| .+..+ +..+..+++|++|++++| ....+++..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456667778888887 5589999999999 88876 467899999999999999 566776666999999999999999
Q ss_pred CCcccc-cccccCCCCCCEEEcCCCCCcc-cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch
Q 012641 257 AKLSKL-HVGEGELIDLQYLNLSNTNICE-LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL 334 (459)
Q Consensus 257 ~~i~~l-P~~i~~L~~L~~L~l~~~~l~~-lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
.+..+ |..++.+++|++|++++|.+.. +|.. ..++++++|++|++++|.+.. ....
T Consensus 84 -~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~----------~~~~~L~~L~~L~Ls~N~l~~-----------~~~~ 141 (844)
T 3j0a_A 84 -KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD----------GYFRNLKALTRLDLSKNQIRS-----------LYLH 141 (844)
T ss_dssp -CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT----------CCCSSCSSCCEEEEESCCCCC-----------CCCC
T ss_pred -cCcccCHhHccCCcccCEeeCcCCCCCcccccC----------ccccccCCCCEEECCCCcccc-----------cccc
Confidence 88877 8899999999999999998875 3331 226677777777777776531 1122
Q ss_pred hhhhccccCceeEEEEe
Q 012641 335 EELESLKHLQEISVIIL 351 (459)
Q Consensus 335 ~~l~~L~~L~~L~l~~~ 351 (459)
..+++|++|+.|+++.+
T Consensus 142 ~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp GGGGTCSSCCEEEEESS
T ss_pred hhHhhCCCCCEEECCCC
Confidence 45666666776666543
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=3.1e-15 Score=151.35 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=90.2
Q ss_pred ccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 196 SWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
.+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++.+++|++|
T Consensus 44 ~l~~l~~L~l~~~-~i~~l-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCC-CCccC-cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEE
Confidence 3578999999999 88888 568889999999999999988887 899999999999999 9999887 9999999999
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
++++|.+..+|. +.++++|++|++++|.+
T Consensus 118 ~L~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 118 TLFNNQITDIDP-------------LKNLTNLNRLELSSNTI 146 (466)
T ss_dssp ECCSSCCCCCGG-------------GTTCTTCSEEEEEEEEE
T ss_pred ECCCCCCCCChH-------------HcCCCCCCEEECCCCcc
Confidence 999999988864 66677777777777654
No 46
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4.2e-15 Score=137.64 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=60.9
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLS 278 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~ 278 (459)
.+.+.+.++ .+..+|..+. ++++.|++++|.+..+++..+..+++|++|++++| .+..+| ..++.+++|++|+++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 345555555 5666544333 45666666666666665555666666666666666 665553 335666666666666
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+|.+..+|.. .+.++++|++|++++|.+
T Consensus 92 ~n~l~~~~~~-----------~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 92 NNQLASLPLG-----------VFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp TSCCCCCCTT-----------TTTTCTTCCEEECCSSCC
T ss_pred CCcccccChh-----------HhcccCCCCEEEcCCCcC
Confidence 6666555421 155666666666666654
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=8.3e-16 Score=158.76 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=103.2
Q ss_pred cCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 184 ETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 184 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
.+..+..+|... .+.++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..|..+++|++|++++| .+..+
T Consensus 13 ~~~~l~~ip~~~-~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 89 (549)
T 2z81_A 13 RSRSFTSIPSGL-TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSL 89 (549)
T ss_dssp TTSCCSSCCSCC-CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSC
T ss_pred CCCccccccccC-CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCcc
Confidence 344566666533 267888999888 777764 56788889999999988888887766888899999999998 88877
Q ss_pred ccc-ccCCCCCCEEEcCCCCCccc--CHHHHHh-------------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCC
Q 012641 263 HVG-EGELIDLQYLNLSNTNICEL--PIGIKKN-------------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV 326 (459)
Q Consensus 263 P~~-i~~L~~L~~L~l~~~~l~~l--p~~i~~L-------------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 326 (459)
|.. ++.+++|++|++++|.+..+ |..++.+ +..+|...+.++++|++|++++|.+
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l--------- 160 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL--------- 160 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC---------
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc---------
Confidence 654 88889999999998888754 3333332 2334432366666666666666655
Q ss_pred CCccccchhhhhccccCceeEEEE
Q 012641 327 PGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 327 ~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
....+..++.+++|+.|++..
T Consensus 161 ---~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 161 ---RNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp ---CEECTTTTTTCSEEEEEEEEC
T ss_pred ---cccChhhhhccccCceEeccc
Confidence 223344455555555555443
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.2e-15 Score=145.81 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=142.6
Q ss_pred CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhC
Q 012641 217 TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAI 296 (459)
Q Consensus 217 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~l 296 (459)
....+++|++|.+.+|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.+..+|.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--------- 102 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVSA--------- 102 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCGG---------
T ss_pred cHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCchh---------
Confidence 34567899999999999888874 899999999999999 9999988 9999999999999999988763
Q ss_pred CCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccC
Q 012641 297 PAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGL 376 (459)
Q Consensus 297 p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~ 376 (459)
+.++++|++|++++|.+.. +..+..+++|+.|+++.+....+..+ .....|+.|+++.
T Consensus 103 ----~~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 103 ----IAGLQSIKTLDLTSTQITD--------------VTPLAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGN 160 (308)
T ss_dssp ----GTTCTTCCEEECTTSCCCC--------------CGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCS
T ss_pred ----hcCCCCCCEEECCCCCCCC--------------chhhcCCCCCCEEECCCCccCcCccc----cCCCCccEEEccC
Confidence 8899999999999998732 23488999999999976554443322 2233577777766
Q ss_pred CCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 377 PELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 377 ~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+.+..+.. ...+++|+.|++++|.+..++.+..+++|++|++++| .+..++.
T Consensus 161 n~l~~~~~-----------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~ 212 (308)
T 1h6u_A 161 AQVSDLTP-----------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVSP 212 (308)
T ss_dssp SCCCCCGG-----------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCGG
T ss_pred CcCCCChh-----------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCcccc
Confidence 66654421 2348899999999999999998999999999999984 5666554
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=1.4e-15 Score=158.27 Aligned_cols=214 Identities=18% Similarity=0.125 Sum_probs=107.3
Q ss_pred ecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc
Q 012641 183 QETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
..+..+..+|.... ++++.|.+.+| .+..+|. .+++|++|++++|.+..+|. .+++|++|++++| .++.+
T Consensus 47 ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l 116 (622)
T 3g06_A 47 VGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHL 116 (622)
T ss_dssp CCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCC
T ss_pred ecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCC
Confidence 33444444443222 45666666666 5555533 34566666666665555554 4455556666555 55555
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHh---------hhhCCCCcC-----------------CCCCCCCEeeecCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKN---------LKAIPAGML-----------------SSLLSLRVFSWVPTR 316 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~L---------l~~lp~~~i-----------------~~L~~L~~L~l~~~~ 316 (459)
|. .+.+|++|++++|.++.+|..+.+| +..+|.. + ..+++|+.|++++|.
T Consensus 117 ~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 54 3344444444444444444332222 1222211 1 123556666666665
Q ss_pred CCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCcc-------ccCccc
Q 012641 317 YAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLI-------DISSSS 389 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~-------~~~l~~ 389 (459)
+..+ +. .+++|+.|++..+....+ +. ...+|+.|+++.+.++.++ .+++.+
T Consensus 193 l~~l-------------~~---~~~~L~~L~L~~N~l~~l---~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 193 LASL-------------PT---LPSELYKLWAYNNRLTSL---PA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSG 250 (622)
T ss_dssp CSCC-------------CC---CCTTCCEEECCSSCCSSC---CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CCCC-------------CC---ccchhhEEECcCCccccc---CC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCC
Confidence 5321 10 123444444432222211 11 1123455555444333321 122222
Q ss_pred c-CCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCc
Q 012641 390 L-TTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 390 ~-~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~ 433 (459)
. -..++. .+++|+.|+|++|.++.+|. ++.+++|+.|+|++++
T Consensus 251 N~L~~lp~-~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 251 NRLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCSCCCC-CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCcCCc-ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 1 111222 57899999999998888886 8899999999999865
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=7.8e-16 Score=147.37 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=147.9
Q ss_pred cccceEEEeecCCCcc-ccCCCC--CCCCcceeeeeecccccccchhHHhcC-----CCccEEEccCCCCccccc-cccc
Q 012641 197 WNEAVRVSLWRSPSID-SLSPTP--PCCPRLLTLLVRYTMIKEFENKFFQSM-----HALRVLDSSQNAKLSKLH-VGEG 267 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~i~~lP-~~i~ 267 (459)
.++++.|.+.++ .+. .+|..+ ..+++|++|++++|.+..+|.. +..+ ++|++|++++| .+..+| ..++
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 578999999999 776 465554 7899999999999998888654 7776 99999999999 888886 7899
Q ss_pred CCCCCCEEEcCCCCCcc---cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch-hhhhccccC
Q 012641 268 ELIDLQYLNLSNTNICE---LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL-EELESLKHL 343 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~~---lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L 343 (459)
.+++|++|++++|.+.. +|.. ..+.++++|++|++++|.+.. ....+ .-+..+++|
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~----------~~~~~l~~L~~L~L~~N~l~~----------~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISA----------LCPLKFPTLQVLALRNAGMET----------PSGVCSALAAARVQL 230 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHH----------SCTTSCTTCCEEECTTSCCCC----------HHHHHHHHHHTTCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHH----------HHhccCCCCCEEECCCCcCcc----------hHHHHHHHHhcCCCC
Confidence 99999999999998653 2221 013789999999999998732 12233 333578999
Q ss_pred ceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCC
Q 012641 344 QEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPR 423 (459)
Q Consensus 344 ~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~ 423 (459)
+.|+++.+........... .....|+.|+++.+.++.+ |.++ +++|++|++++|.++.+|.+..+++
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~~i--------p~~~----~~~L~~L~Ls~N~l~~~p~~~~l~~ 297 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQV--------PKGL----PAKLSVLDLSYNRLDRNPSPDELPQ 297 (312)
T ss_dssp SEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCSSC--------CSSC----CSEEEEEECCSSCCCSCCCTTTSCE
T ss_pred CEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccChh--------hhhc----cCCceEEECCCCCCCCChhHhhCCC
Confidence 9999965433322111111 1123566677666665533 2222 2789999999998888888889999
Q ss_pred cceeecccCcchh
Q 012641 424 LRFLFAKDCPSLE 436 (459)
Q Consensus 424 L~~L~l~~c~~l~ 436 (459)
|++|++++ +.+.
T Consensus 298 L~~L~L~~-N~l~ 309 (312)
T 1wwl_A 298 VGNLSLKG-NPFL 309 (312)
T ss_dssp EEEEECTT-CTTT
T ss_pred CCEEeccC-CCCC
Confidence 99999998 4443
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=1.1e-15 Score=159.86 Aligned_cols=222 Identities=16% Similarity=0.066 Sum_probs=102.2
Q ss_pred cccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecc-cccccchhHHhcCCCccEEEccCCCCcccc---cc
Q 012641 189 IKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYT-MIKEFENKFFQSMHALRVLDSSQNAKLSKL---HV 264 (459)
Q Consensus 189 ~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l---P~ 264 (459)
...+......+++.+.+.++ .++.+| .+ .+++|++|++++| .+..+ . +..+++|++|++++| .+..+ |.
T Consensus 298 ~~l~~l~~~~~L~~L~l~~n-~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n-~l~~~~~~~~ 370 (606)
T 3vq2_A 298 KYLEDVPKHFKWQSLSIIRC-QLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRN-ALSFSGCCSY 370 (606)
T ss_dssp CCCCCCCTTCCCSEEEEESC-CCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSS-CEEEEEECCH
T ss_pred hhhhhccccccCCEEEcccc-cCcccc-cC-CCCccceeeccCCcCccch--h-hccCCCCCEEECcCC-ccCCCcchhh
Confidence 33333344445555566555 445553 33 4555555555544 11111 1 334445555555555 44433 44
Q ss_pred cccCCCCCCEEEcCCCCCcccCHHHHHh------------hhhCCC-CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc
Q 012641 265 GEGELIDLQYLNLSNTNICELPIGIKKN------------LKAIPA-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331 (459)
Q Consensus 265 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L------------l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (459)
.++.+++|++|++++|.+..+|..+..+ +..++. ..+.++++|++|++++|.. ..
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------------~~ 438 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT------------KI 438 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC------------EE
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC------------Cc
Confidence 4445555555555555544444332222 111211 2256666666666666655 33
Q ss_pred cchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCC
Q 012641 332 LLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCS 411 (459)
Q Consensus 332 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~ 411 (459)
..+..++.+++|+.|++..+..... .++........|+.|+++.+.+..+. +.++ ..+++|++|++++|.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~--~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLDLSKCQLEQIS-------WGVF--DTLHRLQLLNMSHNN 508 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSCCCEEC-------TTTT--TTCTTCCEEECCSSC
T ss_pred cchhhhcCCCCCCEEECCCCcCCCc-chHHhhccCCCCCEEECCCCcCCccC-------hhhh--cccccCCEEECCCCc
Confidence 3455566677777776643221110 01222222234555555433332221 1111 235566666666665
Q ss_pred CCCC-c-ccccCCCcceeecccCcchhhhcc
Q 012641 412 IKDL-T-CILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 412 l~~l-p-~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+..+ | .++.+++|++|++++| +++.+|.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~ 538 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFN-RIETSKG 538 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTS-CCCCEES
T ss_pred CCCcCHHHccCCCcCCEEECCCC-cCcccCH
Confidence 5444 2 2555666666666653 3555544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=4.8e-16 Score=148.34 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=155.4
Q ss_pred EEecCCCcccccc--ccccccceEEEeecCCCcccc---CCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccC
Q 012641 181 VFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSL---SPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~ 255 (459)
+...+.....++. ....++++.|.+.++ .+..+ +..+..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 33 L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH 110 (306)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTT
T ss_pred EECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCC
Confidence 3444445555554 346788999999998 77654 34445689999999999988888877 88999999999999
Q ss_pred CCCcccccc--cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc
Q 012641 256 NAKLSKLHV--GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL 333 (459)
Q Consensus 256 ~~~i~~lP~--~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 333 (459)
| .+..+|. .+..+++|++|++++|.+..++. .. +.++++|++|++++|.+. ....
T Consensus 111 n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~-~~~l~~L~~L~l~~n~l~-----------~~~~ 167 (306)
T 2z66_A 111 S-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----------GI-FNGLSSLEVLKMAGNSFQ-----------ENFL 167 (306)
T ss_dssp S-EEESSTTTTTTTTCTTCCEEECTTSCCEECST----------TT-TTTCTTCCEEECTTCEEG-----------GGEE
T ss_pred C-cccccccchhhhhccCCCEEECCCCcCCccch----------hh-cccCcCCCEEECCCCccc-----------cccc
Confidence 9 9988864 78999999999999998876532 23 788999999999988762 1135
Q ss_pred hhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC
Q 012641 334 LEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 334 ~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
+..+..+++|+.|+++.+....+. +........|+.|+++.+.+..+....+ ..+++|+.|++++|.+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPY---------KCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSGGG---------TTCTTCCEEECTTSCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChhhc---------cCcccCCEeECCCCCCc
Confidence 667788899999988644332210 1111222346666666665554422111 34789999999999666
Q ss_pred CCc--ccccCC-CcceeecccCc
Q 012641 414 DLT--CILYIP-RLRFLFAKDCP 433 (459)
Q Consensus 414 ~lp--~l~~l~-~L~~L~l~~c~ 433 (459)
..+ .+..++ +|++|++++++
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCHHHHHhhhccCCEEEccCCC
Confidence 654 377775 99999998843
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=8.5e-16 Score=159.93 Aligned_cols=208 Identities=22% Similarity=0.184 Sum_probs=147.1
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
..++.+.+.++ .+..+|..+. ++|++|++++|.+..+|. .+++|++|+|++| .++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEEC
Confidence 35889999999 9999976555 899999999999998887 5799999999999 9999998 7899999999
Q ss_pred CCCCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc---------
Q 012641 278 SNTNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES--------- 339 (459)
Q Consensus 278 ~~~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 339 (459)
++|.++.+|..+.+| +..+|.. +++|++|++++|.+..++ ..+..+..
T Consensus 109 s~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~----------~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLP----------ALPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCCCCCCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCS
T ss_pred cCCcCCCCCCCCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcC----------CccCCCCEEECCCCCCC
Confidence 999999988744444 5667764 488999999998875421 12222222
Q ss_pred -----cccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCc-------cccCcccc-CCccCcccccCccEEE
Q 012641 340 -----LKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSL-------IDISSSSL-TTMMKGHFSQNLQDLS 406 (459)
Q Consensus 340 -----L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l-------~~~~l~~~-~~~i~~~~l~~L~~L~ 406 (459)
+++|+.|+++.+....+ +.. ...|+.|.++.+.+..+ ..+++... -..++ ..+++|+.|+
T Consensus 175 ~l~~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp-~~l~~L~~L~ 247 (622)
T 3g06_A 175 SLPMLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP-VLPSELKELM 247 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEE
T ss_pred CCcccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC-CCCCcCcEEE
Confidence 37777777765433332 221 23566666655544433 22333321 11233 4567888888
Q ss_pred EecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 407 IINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 407 L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+++|.++.+|. .+++|++|++++| +++.+|.
T Consensus 248 Ls~N~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 248 VSGNRLTSLPM--LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSS-CCCSCCG
T ss_pred CCCCCCCcCCc--ccccCcEEeCCCC-CCCcCCH
Confidence 88888888877 5788899999884 6777765
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=6.2e-15 Score=148.04 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=99.9
Q ss_pred cccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCE
Q 012641 197 WNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQY 274 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~ 274 (459)
+.+++.|.+.+| .+..+++ .+..+++|++|++++|.+..++...|..+++|++|++++|..+..+|. .+..+++|++
T Consensus 111 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 111 LANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp CSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 345555555555 5555542 345555555555555555555554455555555555555334444433 3555556666
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
|++++|.++.+|. +..+++|++|++++|.+ ....+..+..+++|+.|++..+...
T Consensus 190 L~L~~n~l~~~~~-------------~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 190 LNLAMCNLREIPN-------------LTPLIKLDELDLSGNHL------------SAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp EECTTSCCSSCCC-------------CTTCSSCCEEECTTSCC------------CEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ecCCCCcCccccc-------------cCCCcccCEEECCCCcc------------CccChhhhccCccCCEEECCCCcee
Confidence 6666655555442 67777777777777766 3344567777788888877543322
Q ss_pred hhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCC
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSI 412 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l 412 (459)
.+.. ........|+.|+++.+.+..+....+ ..+++|+.|+|++|.+
T Consensus 245 ~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 245 VIER--NAFDNLQSLVEINLAHNNLTLLPHDLF---------TPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECT--TSSTTCTTCCEEECTTSCCCCCCTTTT---------SSCTTCCEEECCSSCE
T ss_pred EECh--hhhcCCCCCCEEECCCCCCCccChhHh---------ccccCCCEEEcCCCCc
Confidence 2110 111112345566665555544422111 2478999999999943
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=2.8e-16 Score=165.21 Aligned_cols=215 Identities=12% Similarity=0.078 Sum_probs=143.3
Q ss_pred ccccccceEEEeecCCCccc------------------cCCCCC--CCCcceeeeeeccccc-ccchhHHhcCCCccEEE
Q 012641 194 TASWNEAVRVSLWRSPSIDS------------------LSPTPP--CCPRLLTLLVRYTMIK-EFENKFFQSMHALRVLD 252 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~ 252 (459)
...+++++.|.+.+| .+.. +|..+. ++++|++|++++|.+. .+|.. ++.+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEE
Confidence 445678999999999 7887 888888 9999999999999654 56655 89999999999
Q ss_pred ccCCCC-cc--cccccccCC------CCCCEEEcCCCCCcccCH--HHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcC
Q 012641 253 SSQNAK-LS--KLHVGEGEL------IDLQYLNLSNTNICELPI--GIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFN 321 (459)
Q Consensus 253 L~~~~~-i~--~lP~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 321 (459)
+++| . ++ .+|..++.+ ++|++|++++|.+..+|. . ++++++|++|++++|.+
T Consensus 280 Ls~n-~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~------------l~~l~~L~~L~L~~N~l---- 342 (636)
T 4eco_A 280 VACN-RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS------------LQKMKKLGMLECLYNQL---- 342 (636)
T ss_dssp CTTC-TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH------------HTTCTTCCEEECCSCCC----
T ss_pred CcCC-CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh------------hccCCCCCEEeCcCCcC----
Confidence 9999 6 77 489988887 999999999999888876 5 55566666666666554
Q ss_pred CCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhh-hhhhhccCCCCCCcc------------ccCcc
Q 012641 322 YGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSC-VRRQVMGLPELSSLI------------DISSS 388 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~-L~~L~l~~~~l~~l~------------~~~l~ 388 (459)
.+..+ .++.+++|+.|+++.+... .++........ |+.|+++.+.+..++ .+++.
T Consensus 343 --------~g~ip-~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 343 --------EGKLP-AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp --------EEECC-CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECC
T ss_pred --------ccchh-hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECc
Confidence 22233 4555555555555432222 12211111122 444444333332221 11121
Q ss_pred c------cCCccCc-----ccccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhcc
Q 012641 389 S------LTTMMKG-----HFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 389 ~------~~~~i~~-----~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
. .|.+++. -.+++|++|++++|.+..+|. +..+++|++|++++ +++..++.
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~ 474 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPK 474 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-SCCSBCCS
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-CCCCCcCH
Confidence 1 1222220 135689999999998888885 45689999999998 55667766
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=1.1e-15 Score=154.01 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=40.0
Q ss_pred cccceEEEeecCCCcccc-CCCCCCCCcceeeeeecccccc--cchhHHhcCCCccEEEccCCCCcccc-ccc-ccCCCC
Q 012641 197 WNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYTMIKE--FENKFFQSMHALRVLDSSQNAKLSKL-HVG-EGELID 271 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~-i~~L~~ 271 (459)
.++++.|.+.+| .+..+ |..+..+++|++|++++|.+.. .+...+..+++|++|++++| .+..+ |.. ++.+++
T Consensus 78 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 78 LSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRR 155 (455)
T ss_dssp CTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTT
T ss_pred cccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCc
Confidence 344555555554 44433 2344445555555555554432 11122444555555555555 44444 332 455555
Q ss_pred CCEEEcCCCCCcc
Q 012641 272 LQYLNLSNTNICE 284 (459)
Q Consensus 272 L~~L~l~~~~l~~ 284 (459)
|++|++++|.+..
T Consensus 156 L~~L~L~~n~l~~ 168 (455)
T 3v47_A 156 FHVLDLTFNKVKS 168 (455)
T ss_dssp CCEEECTTCCBSC
T ss_pred ccEEeCCCCcccc
Confidence 5555555555443
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=155.84 Aligned_cols=147 Identities=19% Similarity=0.128 Sum_probs=113.0
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.++.+.+.+...+|... ...++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-
Confidence 34556666777777532 367999999999 888875 46788999999999999988888877999999999999999
Q ss_pred Cccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 258 KLSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 258 ~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.+..+| ..++.+++|++|++++|.+..+|.. . ++++++|++|++++|.+. ....+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----------~-~~~l~~L~~L~L~~n~l~-----------~~~lp~~ 144 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENF----------P-IGHLKTLKELNVAHNLIQ-----------SFKLPEY 144 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTC----------S-CTTCTTCCEEECCSSCCC-----------CCCCCGG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCc----------c-ccccccccEEecCCCccc-----------eecChhh
Confidence 888885 6789999999999999998887641 1 667777777777776652 1124556
Q ss_pred hhccccCceeEEEE
Q 012641 337 LESLKHLQEISVII 350 (459)
Q Consensus 337 l~~L~~L~~L~l~~ 350 (459)
++++++|+.|+++.
T Consensus 145 ~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 145 FSNLTNLEHLDLSS 158 (570)
T ss_dssp GGGCTTCCEEECTT
T ss_pred hcccCCCCEEeCcC
Confidence 66666666666643
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=6.4e-16 Score=166.27 Aligned_cols=120 Identities=22% Similarity=0.285 Sum_probs=73.8
Q ss_pred ccccccceEEEeecCCC-ccc--cCC-------CCCCCCcceeeeeecccccccch-hHHhcCCCccEEEccCCCCcccc
Q 012641 194 TASWNEAVRVSLWRSPS-IDS--LSP-------TPPCCPRLLTLLVRYTMIKEFEN-KFFQSMHALRVLDSSQNAKLSKL 262 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~-~~~--~~~-------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~i~~l 262 (459)
...+++++.|.+.+| . +.. +|. .+..+++|+.|++++|.+..+|. ..++.+++|++|++++| .+..+
T Consensus 511 l~~L~~L~~L~Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~l 588 (876)
T 4ecn_A 511 LYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHL 588 (876)
T ss_dssp GGGCSSCCEEECTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBC
T ss_pred HhCCCCCCEEECcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccc
Confidence 445567777777777 4 442 432 33445577777777776666766 22777777777777777 66677
Q ss_pred cccccCCCCCCEEEcCCCCCcccCHHHHHh-------------hhhCCCCcCCCCCC--CCEeeecCCCC
Q 012641 263 HVGEGELIDLQYLNLSNTNICELPIGIKKN-------------LKAIPAGMLSSLLS--LRVFSWVPTRY 317 (459)
Q Consensus 263 P~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-------------l~~lp~~~i~~L~~--L~~L~l~~~~~ 317 (459)
| .++.+++|++|++++|.+..+|.++..+ +..+|.. +..+.. |+.|++++|.+
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEECCSSCT
T ss_pred h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchh-hhccccCCCCEEECcCCcC
Confidence 7 6777777777777777766666543321 3345544 444433 66666665554
No 59
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=3.4e-15 Score=156.06 Aligned_cols=219 Identities=13% Similarity=0.105 Sum_probs=107.5
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-ccccc-ccCCCCCCE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLHVG-EGELIDLQY 274 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~-i~~L~~L~~ 274 (459)
.++++.+.+.++ .+..+|..+..+++|++|++++|.+..+++..+..+++|++|++++| .+. .+|.. ++.+++|++
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN-TKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTCCE
T ss_pred ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC-CcccccchhhhhccCcCCE
Confidence 345555555555 55555544555555555555555554444433555555555555555 333 34332 455555555
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
|++++|.+..++ ..|.. +.++++|++|++++|.+ ....+..++.+++|+.|++..+...
T Consensus 355 L~l~~n~l~~~~--------~~~~~-~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 355 LDLSHDDIETSD--------CCNLQ-LRNLSHLQSLNLSYNEP------------LSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp EECCSSCCCEEE--------ESTTT-TTTCTTCCEEECCSCSC------------EEECTTTTTTCTTCSEEECTTCCEE
T ss_pred EECCCCcccccc--------Ccchh-cccCCCCCEEECCCCcC------------CcCCHHHhcCCccCCeEECCCCcCC
Confidence 555555554431 01223 55566666666665554 2233445555556665555432211
Q ss_pred hhhhhhcchhHHhhhhhhhccCCC-----------CCCccccCcccc-------CCccCcccccCccEEEEecCCCCCCc
Q 012641 355 SLNKLKSSSKLQSCVRRQVMGLPE-----------LSSLIDISSSSL-------TTMMKGHFSQNLQDLSIINCSIKDLT 416 (459)
Q Consensus 355 ~~~~l~~~~~l~~~L~~L~l~~~~-----------l~~l~~~~l~~~-------~~~i~~~~l~~L~~L~L~~~~l~~lp 416 (459)
.... .........|+.|+++.+. +++|..+++.+. +..-....+++|++|++++|.+..++
T Consensus 414 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 414 VKDA-QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CCTT-CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred Cccc-chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 1100 0001111234444442222 222222233221 00001134788888888888666664
Q ss_pred --ccccCCCcceeecccCcchhhhcc
Q 012641 417 --CILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 417 --~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.++.+++|++|+++++ ++..++.
T Consensus 493 ~~~~~~l~~L~~L~Ls~N-~l~~~~~ 517 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHN-RLTSSSI 517 (606)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCGGGG
T ss_pred hhhhccccCCCEEECCCC-ccCcCCh
Confidence 3778888888888884 4555544
No 60
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=2.4e-15 Score=161.54 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=93.4
Q ss_pred ccccceEEEeecCCCcc-ccCCCCCC-CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-ccccc-ccCCCC
Q 012641 196 SWNEAVRVSLWRSPSID-SLSPTPPC-CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLHVG-EGELID 271 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~-i~~L~~ 271 (459)
..++++.|.+.+| .+. .+|..+.. +++|++|++++|.+....+..++.+++|++|++++| .+. .+|.. ++.+++
T Consensus 267 ~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 267 PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRG 344 (768)
T ss_dssp CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTT
T ss_pred ccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCC
Confidence 4456777777776 554 55555555 488888888888766433334888888888888888 776 77765 788888
Q ss_pred CCEEEcCCCCCc-ccCHHHHHh--------------hhhCCCCcCCC--CCCCCEeeecCCCCCCcCCCCCCCCccccch
Q 012641 272 LQYLNLSNTNIC-ELPIGIKKN--------------LKAIPAGMLSS--LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL 334 (459)
Q Consensus 272 L~~L~l~~~~l~-~lp~~i~~L--------------l~~lp~~~i~~--L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 334 (459)
|++|++++|.+. .+|..+..+ ...+|.. +.. +++|++|++.+|.+ .+..+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l------------~~~~p 411 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGF------------TGKIP 411 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEE------------EEECC
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCcc------------ccccC
Confidence 888888888776 777776654 1234444 444 66677777776665 33455
Q ss_pred hhhhccccCceeEEEE
Q 012641 335 EELESLKHLQEISVII 350 (459)
Q Consensus 335 ~~l~~L~~L~~L~l~~ 350 (459)
..++++++|+.|+++.
T Consensus 412 ~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSF 427 (768)
T ss_dssp GGGGGCTTCCEEECCS
T ss_pred HHHhcCCCCCEEECcC
Confidence 5566666666666643
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.2e-15 Score=155.17 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=113.2
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
++++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++ +..+++|++|+|++| .++.+|.. ++|++|+
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVG----PSIETLH 105 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEEC----TTCCEEE
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCC----CCcCEEE
Confidence 47888888888 777765 467788888888888887776665 788888888888888 88777643 6788888
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhh
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSL 356 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 356 (459)
+++|.+..+|. ..+++|++|++++|.+ ....+..++++++|+.|+++.+.....
T Consensus 106 L~~N~l~~~~~--------------~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 106 AANNNISRVSC--------------SRGQGKKNIYLANNKI------------TMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CCSSCCCCEEE--------------CCCSSCEEEECCSSCC------------CSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred CcCCcCCCCCc--------------cccCCCCEEECCCCCC------------CCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 88887776642 2345556666655554 222333445555555555543322211
Q ss_pred hhhhcchhHHhhhhhhhccCCCCCCc---------cccCccc-----cCCccCcccccCccEEEEecCCCCCCcc-cccC
Q 012641 357 NKLKSSSKLQSCVRRQVMGLPELSSL---------IDISSSS-----LTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYI 421 (459)
Q Consensus 357 ~~l~~~~~l~~~L~~L~l~~~~l~~l---------~~~~l~~-----~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l 421 (459)
.. .........|+.|+++.+.+..+ ..+++.. .+..+ ..+++|+.|+|++|.+..+|. ++.+
T Consensus 160 ~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 160 NF-AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp EG-GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGG--GGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred Ch-HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhH--cCCCCccEEEecCCcCcccchhhccC
Confidence 00 00000112344444433333222 1111111 01111 235666666666666656554 5666
Q ss_pred CCcceeecccCc
Q 012641 422 PRLRFLFAKDCP 433 (459)
Q Consensus 422 ~~L~~L~l~~c~ 433 (459)
++|+.|++++++
T Consensus 237 ~~L~~L~l~~N~ 248 (487)
T 3oja_A 237 QNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEcCCCC
Confidence 666666666644
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=8.1e-16 Score=147.62 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=64.0
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
++++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++ +..+++|++|++++| .++.+|. .++|++|+
T Consensus 34 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (317)
T ss_dssp GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEEE
Confidence 46777777777 666664 345677777777777776665554 677777777777777 7766653 26677777
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+++|.+..+|. ..+++|++|++++|.+
T Consensus 106 l~~n~l~~~~~--------------~~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 106 AANNNISRVSC--------------SRGQGKKNIYLANNKI 132 (317)
T ss_dssp CCSSCCSEEEE--------------CCCSSCEEEECCSSCC
T ss_pred CCCCccCCcCc--------------cccCCCCEEECCCCCC
Confidence 77776665542 2244555555555554
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=148.75 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=90.8
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|++++
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCC
Confidence 57889999 8999976555 89999999999999998777999999999999999 89887 78899999999999999
Q ss_pred CCCcccCHHHHHh------------hhh--CCCCcCCCCCCCCEeeecCCCC
Q 012641 280 TNICELPIGIKKN------------LKA--IPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 280 ~~l~~lp~~i~~L------------l~~--lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
|.++.+|.. .+ +.. +|.. ++++++|++|++++|.+
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCccc
Confidence 999998864 22 332 3444 66677777777766655
No 64
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=2.3e-15 Score=156.39 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=99.3
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
....+..++.|.+.++ .+..+ +.+..+++|+.|++++|.+..+++ +..+++|++|+|++| .+..+| .++.+++|
T Consensus 38 ~~~~L~~L~~L~l~~n-~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 38 TQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKL 111 (605)
T ss_dssp CHHHHTTCCCCBCTTC-CCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTC
T ss_pred chhcCCCCCEEECcCC-CCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCC
Confidence 3345567888888888 78777 567888888899888888888776 888888999999888 888776 58888889
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
++|+|++|.+..+|. +.+|++|+.|++++|.+.. +..++.|++|+.|+++.+
T Consensus 112 ~~L~Ls~N~l~~l~~-------------l~~l~~L~~L~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 112 KSLSLEHNGISDING-------------LVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CEEECTTSCCCCCGG-------------GGGCTTCSEEECCSSCCCC--------------CGGGGSCTTCSEEECCSS
T ss_pred CEEEecCCCCCCCcc-------------ccCCCccCEEECCCCccCC--------------chhhcccCCCCEEECcCC
Confidence 999998888877653 7788888888888887631 256778888888887543
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3e-15 Score=140.63 Aligned_cols=194 Identities=19% Similarity=0.173 Sum_probs=142.4
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIG 288 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~ 288 (459)
.+..+|..+. ++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .++.+++|++|++++|.+..+|.
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 93 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL- 93 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECT-
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccCh-
Confidence 5666654443 57999999999999888866999999999999999 9988864 78999999999999999987753
Q ss_pred HHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhh
Q 012641 289 IKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSC 368 (459)
Q Consensus 289 i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~ 368 (459)
.. +.++++|++|++.+|.+. ......++++++|+.|+++.+....+. ++........
T Consensus 94 ---------~~-~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~ 150 (276)
T 2z62_A 94 ---------GA-FSGLSSLQKLVAVETNLA------------SLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTN 150 (276)
T ss_dssp ---------TT-TTTCTTCCEEECTTSCCC------------CSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTT
T ss_pred ---------hh-hcCCccccEEECCCCCcc------------ccCchhcccCCCCCEEECcCCccceec-CchhhccCCC
Confidence 23 899999999999999873 223335788999999999755433211 1222222345
Q ss_pred hhhhhccCCCCCCccccCccccCCccCcccccCcc----EEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 369 VRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQ----DLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 369 L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~----~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
|+.|+++.+.+..+....+ ..+++|+ .|++++|.+..++. .....+|+.|++++ ++++.++.
T Consensus 151 L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~ 217 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDL---------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT-NQLKSVPD 217 (276)
T ss_dssp CCEEECCSSCCCEECGGGG---------HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS-SCCSCCCT
T ss_pred CCEEECCCCCCCcCCHHHh---------hhhhhccccceeeecCCCcccccCccccCCCcccEEECCC-CceeecCH
Confidence 7777776666654422111 1234444 89999998888775 55566999999998 45877766
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=4e-15 Score=150.02 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=154.5
Q ss_pred cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDL 272 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 272 (459)
....+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+| ++.+++|++|++++| .++.+| ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDM-TGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCC-TTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCC-CcccC-hhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 3445678999999999 89888 57889999999999999988885 889999999999999 999886 9999999
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
++|++++|.+..+| ++++++|++|++++|.+.. . .++.+++|+.|++..+.
T Consensus 109 ~~L~L~~N~l~~l~--------------~~~l~~L~~L~l~~N~l~~-------------l--~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--------------VSQNPLLTYLNCARNTLTE-------------I--DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CEEECCSSCCSCCC--------------CTTCTTCCEEECTTSCCSC-------------C--CCTTCTTCCEEECTTCS
T ss_pred CEEECCCCcCCeec--------------CCCCCcCCEEECCCCccce-------------e--ccccCCcCCEEECCCCC
Confidence 99999999998775 7899999999999998732 1 37789999999986442
Q ss_pred hhhhhhhhcchhHHhhhhhhhccCCCCCCccc--------cCcccc-CCccCcccccCccEEEEecCCCCCCcccccCCC
Q 012641 353 LDSLNKLKSSSKLQSCVRRQVMGLPELSSLID--------ISSSSL-TTMMKGHFSQNLQDLSIINCSIKDLTCILYIPR 423 (459)
Q Consensus 353 ~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~--------~~l~~~-~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~ 423 (459)
.+..+ . ......|+.|+++.+.++.++. +++... -..++...+++|+.|++++|.++.+| ++.+++
T Consensus 160 --~~~~~-~-~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~ 234 (457)
T 3bz5_A 160 --KITKL-D-VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQ 234 (457)
T ss_dssp --CCCCC-C-CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTT
T ss_pred --ccccc-c-cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCC
Confidence 11111 1 1123457777776655554432 222221 11123355788999999999888887 788899
Q ss_pred cceeecccCcchhhhcc
Q 012641 424 LRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 424 L~~L~l~~c~~l~~i~~ 440 (459)
|++|++++ ++++.++.
T Consensus 235 L~~L~l~~-N~l~~~~~ 250 (457)
T 3bz5_A 235 LTYFDCSV-NPLTELDV 250 (457)
T ss_dssp CSEEECCS-SCCSCCCC
T ss_pred CCEEEeeC-CcCCCcCH
Confidence 99999988 45666543
No 67
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=2.7e-15 Score=161.15 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=83.6
Q ss_pred ccceEEEeecCCCcc-ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSID-SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~L 275 (459)
..++.+.+.+| .+. .+|..+..+++|++|++++|.+....+..++.+++|++|++++| .+. .+|..++.+++|++|
T Consensus 394 ~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 394 NTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp CCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEE
T ss_pred CCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEE
Confidence 34555555555 443 34445555666666666666554322233666666666666666 444 456666666666666
Q ss_pred EcCCCCCc-ccCHHHHHh------------h-hhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccc
Q 012641 276 NLSNTNIC-ELPIGIKKN------------L-KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK 341 (459)
Q Consensus 276 ~l~~~~l~-~lp~~i~~L------------l-~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 341 (459)
++++|.+. .+|..++.+ + ..+|.. ++++++|++|++++|.+ .+..+..++.++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l------------~~~~p~~l~~l~ 538 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF------------SGNIPAELGDCR 538 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC------------EEECCGGGGGCT
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcc------------cCcCCHHHcCCC
Confidence 66666655 455555443 2 245555 66667777777776665 455677888888
Q ss_pred cCceeEEEEe
Q 012641 342 HLQEISVIIL 351 (459)
Q Consensus 342 ~L~~L~l~~~ 351 (459)
+|+.|+++.+
T Consensus 539 ~L~~L~Ls~N 548 (768)
T 3rgz_A 539 SLIWLDLNTN 548 (768)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 8888887643
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=7.5e-15 Score=137.64 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=120.9
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
.+...+.....++.....+.++.|.+.++ .+..+ +.+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 121 (272)
T 3rfs_A 45 QIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QL 121 (272)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred eeeeCCCCcccccccccCCCCcEEECCCC-CCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cC
Confidence 34445555666666777889999999999 88887 67889999999999999999999887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
..+|.. ++.+++|++|++++|.+..+|.. .++++++|++|++++|.+ ....+..++
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~l~~n~l------------~~~~~~~~~ 178 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----------VFDKLTNLTELDLSYNQL------------QSLPEGVFD 178 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTTT
T ss_pred CccCHHHhccCCCCCEEECCCCccCccCHH-----------HhccCccCCEEECCCCCc------------CccCHHHhc
Confidence 988655 78999999999999999877643 278999999999999987 333444567
Q ss_pred ccccCceeEEEE
Q 012641 339 SLKHLQEISVII 350 (459)
Q Consensus 339 ~L~~L~~L~l~~ 350 (459)
.+++|+.|++..
T Consensus 179 ~l~~L~~L~L~~ 190 (272)
T 3rfs_A 179 KLTQLKDLRLYQ 190 (272)
T ss_dssp TCTTCCEEECCS
T ss_pred CCccCCEEECCC
Confidence 889999988853
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=136.36 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=118.4
Q ss_pred EEEecCCCcccccc--ccccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCC
Q 012641 180 LVFQETDKSIKVQE--TASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQN 256 (459)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 256 (459)
.+...+......+. .....+++.|.+.++ .+..+++. +..+++|++|++++|.+..++...+..+++|++|++++|
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 34444444555543 456789999999999 89888754 478999999999999999999888899999999999999
Q ss_pred CCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchh
Q 012641 257 AKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 335 (459)
Q Consensus 257 ~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 335 (459)
.+..+|. .++.+++|++|++++|.+..+|.. .+.++++|++|++++|.+. ...+.
T Consensus 120 -~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~~~~l~~L~~L~L~~n~l~------------~~~~~ 175 (270)
T 2o6q_A 120 -QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-----------VFDKLTSLKELRLYNNQLK------------RVPEG 175 (270)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCCS------------CCCTT
T ss_pred -ccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-----------HccCCcccceeEecCCcCc------------EeChh
Confidence 9988864 578999999999999999887643 2789999999999999873 33344
Q ss_pred hhhccccCceeEEEE
Q 012641 336 ELESLKHLQEISVII 350 (459)
Q Consensus 336 ~l~~L~~L~~L~l~~ 350 (459)
.+..+++|+.|+++.
T Consensus 176 ~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 176 AFDKLTELKTLKLDN 190 (270)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HhccCCCcCEEECCC
Confidence 577888899888853
No 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.59 E-value=6.1e-16 Score=164.10 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=99.6
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCC-ChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhhcCCCchhH-HHHhhhhc
Q 012641 19 ELAETVADMCGGLPLALVTIGSAMASRR-DPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSYDRLTSETH-KTCFLYCS 96 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~~L~~~~-~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~cfl~~~ 96 (459)
++..+| |+|+||||+++|+.|+.+. +.++|+.+ ....+..++.+||+.||+ +. |+||+|||
T Consensus 317 eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LA 379 (1221)
T 1vt4_I 317 DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLS 379 (1221)
T ss_dssp THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTT
T ss_pred HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHh
Confidence 344444 9999999999999999853 67888763 124799999999999999 58 99999999
Q ss_pred ccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHH
Q 012641 97 LFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMA 167 (459)
Q Consensus 97 ~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~ 167 (459)
+||+++.|.++.++.+|+++| ++.++.++++|+++||++... ....|+|||++++++
T Consensus 380 IFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~---~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 380 VFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP---KESTISIPSIYLELK 436 (1221)
T ss_dssp SSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS---SSSEEBCCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC---CCCEEEehHHHHHHh
Confidence 999999999999999999987 124778999999999999742 267899999999865
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=6.4e-15 Score=140.84 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=143.2
Q ss_pred ccceEEEeecCCCccc-cCCCC--CCCCcceeeeeeccccccc----chhHHhcCCCccEEEccCCCCccccc-ccccCC
Q 012641 198 NEAVRVSLWRSPSIDS-LSPTP--PCCPRLLTLLVRYTMIKEF----ENKFFQSMHALRVLDSSQNAKLSKLH-VGEGEL 269 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L 269 (459)
..++.+.+.++ .+.. .|..+ ..+++|++|++++|.+... +...+..+++|++|++++| .+..+| ..++.+
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 56999999999 6664 44555 7899999999999977642 2233567999999999999 888775 678999
Q ss_pred CCCCEEEcCCCCCcc---cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh-hhccccCce
Q 012641 270 IDLQYLNLSNTNICE---LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE-LESLKHLQE 345 (459)
Q Consensus 270 ~~L~~L~l~~~~l~~---lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~ 345 (459)
++|++|++++|.+.. +|. +.. ++++++|++|++++|.+.. ....+.. ++.+++|+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~---------~~~-~~~l~~L~~L~Ls~N~l~~----------l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMA---------ALC-PHKFPAIQNLALRNTGMET----------PTGVCAALAAAGVQPHS 228 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHT---------TSC-TTSSCCCCSCBCCSSCCCC----------HHHHHHHHHHHTCCCSS
T ss_pred CCCCEEECCCCCCccchhhhH---------HHh-hhcCCCCCEEECCCCCCCc----------hHHHHHHHHhcCCCCCE
Confidence 999999999998753 211 111 5789999999999998732 1222222 478899999
Q ss_pred eEEEEeChhhh--hhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCC
Q 012641 346 ISVIILTLDSL--NKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPR 423 (459)
Q Consensus 346 L~l~~~~~~~~--~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~ 423 (459)
|+++.+..... ..+.... ....|+.|+++.+.++.+ | ...+++|++|+|++|.++.+|.+..+++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~-~~~~L~~L~Ls~N~l~~l--------p----~~~~~~L~~L~Ls~N~l~~~~~~~~l~~ 295 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCM-WSSALNSLNLSFAGLEQV--------P----KGLPAKLRVLDLSSNRLNRAPQPDELPE 295 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCC-CCTTCCCEECCSSCCCSC--------C----SCCCSCCSCEECCSCCCCSCCCTTSCCC
T ss_pred EECCCCCCCccchhhHHhcc-CcCcCCEEECCCCCCCch--------h----hhhcCCCCEEECCCCcCCCCchhhhCCC
Confidence 99965543322 1111111 013567777766666543 2 2234799999999998888888888999
Q ss_pred cceeecccC
Q 012641 424 LRFLFAKDC 432 (459)
Q Consensus 424 L~~L~l~~c 432 (459)
|+.|++++.
T Consensus 296 L~~L~L~~N 304 (310)
T 4glp_A 296 VDNLTLDGN 304 (310)
T ss_dssp CSCEECSST
T ss_pred ccEEECcCC
Confidence 999999983
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=1.6e-15 Score=145.27 Aligned_cols=188 Identities=12% Similarity=0.107 Sum_probs=135.5
Q ss_pred CCCcceeeeeeccccc-ccchhHH-hcCCCccEEEccCCCCcccccccccCC-----CCCCEEEcCCCCCcccCHHHHHh
Q 012641 220 CCPRLLTLLVRYTMIK-EFENKFF-QSMHALRVLDSSQNAKLSKLHVGEGEL-----IDLQYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 220 ~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~Lr~L~L~~~~~i~~lP~~i~~L-----~~L~~L~l~~~~l~~lp~~i~~L 292 (459)
.+++|++|++++|.+. .+|..++ ..+++|++|++++| .+..+|..++.+ ++|++|++++|.+..+|.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~----- 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC----- 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-----
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-----
Confidence 5788999999999876 5666532 88999999999999 888888777776 899999999998887652
Q ss_pred hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh--hccccCceeEEEEeChhhhhhhhcc-hhHHhhh
Q 012641 293 LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL--ESLKHLQEISVIILTLDSLNKLKSS-SKLQSCV 369 (459)
Q Consensus 293 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~l~~~-~~l~~~L 369 (459)
.. ++++++|++|++++|.... ....+..+ +.+++|+.|+++.+....+..+... ......|
T Consensus 167 -----~~-~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 167 -----EQ-VRVFPALSTLDLSDNPELG----------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp -----TT-CCCCSSCCEEECCSCTTCH----------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred -----HH-hccCCCCCEEECCCCCcCc----------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 23 8999999999999998521 12234455 7899999999976554433332211 1122357
Q ss_pred hhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCcchhhhcc
Q 012641 370 RRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 370 ~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
+.|+++.+.+...... . ....+++|++|++++|.++.+|. +. ++|++|++++ ++++.+|.
T Consensus 231 ~~L~Ls~N~l~~~~~~------~--~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~ 291 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGA------P--SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRNPS 291 (312)
T ss_dssp SEEECTTSCCCSSCCC------S--CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS-SCCCSCCC
T ss_pred CEEECCCCcCCcccch------h--hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC-CCCCCChh
Confidence 7777766665543100 0 01236899999999998888886 44 8999999998 57777744
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=7.6e-15 Score=134.80 Aligned_cols=189 Identities=12% Similarity=0.070 Sum_probs=139.4
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC-cccccc-cccCCCCCCEEEcCC-CCCcccC
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK-LSKLHV-GEGELIDLQYLNLSN-TNICELP 286 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-i~~lP~-~i~~L~~L~~L~l~~-~~l~~lp 286 (459)
.++.+|. + .++|++|++++|.+..+++..|..+++|++|++++| . ++.+|. .++.+++|++|++++ |.++.+|
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 4677754 3 348999999999999999877999999999999999 6 988875 689999999999999 8998876
Q ss_pred HHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCc---eeEEEEe-Chhhhhhhhcc
Q 012641 287 IGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ---EISVIIL-TLDSLNKLKSS 362 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~---~L~l~~~-~~~~~~~l~~~ 362 (459)
.. .+.++++|++|++++|.+.. .+. ++.+++|+ .|++..+ ....+.. ..
T Consensus 98 ~~-----------~f~~l~~L~~L~l~~n~l~~-------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~ 150 (239)
T 2xwt_C 98 PD-----------ALKELPLLKFLGIFNTGLKM-------------FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NA 150 (239)
T ss_dssp TT-----------SEECCTTCCEEEEEEECCCS-------------CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TT
T ss_pred HH-----------HhCCCCCCCEEeCCCCCCcc-------------ccc-cccccccccccEEECCCCcchhhcCc--cc
Confidence 42 28899999999999998732 222 66677777 8888754 3322211 00
Q ss_pred hhHHhhhh-hhhccCCCCCCccccCccccCCccCcccccCccEEEEecC-CCCCCcc--cccC-CCcceeecccCcchhh
Q 012641 363 SKLQSCVR-RQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKDLTC--ILYI-PRLRFLFAKDCPSLEE 437 (459)
Q Consensus 363 ~~l~~~L~-~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~lp~--l~~l-~~L~~L~l~~c~~l~~ 437 (459)
......|+ .|+++.+.+..++. ..- ..++|++|++++| .++.+|. +..+ ++|++|++++ ++++.
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~--------~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~ 219 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQG--------YAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTA 219 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECT--------TTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCC
T ss_pred ccchhcceeEEEcCCCCCcccCH--------hhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-Ccccc
Confidence 11123455 56555555543321 111 1268999999999 6999874 7888 9999999998 77888
Q ss_pred hcc
Q 012641 438 IIA 440 (459)
Q Consensus 438 i~~ 440 (459)
++.
T Consensus 220 l~~ 222 (239)
T 2xwt_C 220 LPS 222 (239)
T ss_dssp CCC
T ss_pred CCh
Confidence 777
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=3.1e-14 Score=147.55 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=76.4
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEc
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 277 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l 277 (459)
..+.+.+.++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|++
T Consensus 32 ~~~~l~ls~~-~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNR-NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTS-CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCC-CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 3488999999 9999976554 89999999999999998777999999999999999 99988 678999999999999
Q ss_pred CCCCCcccCHH
Q 012641 278 SNTNICELPIG 288 (459)
Q Consensus 278 ~~~~l~~lp~~ 288 (459)
++|.++.+|..
T Consensus 108 s~N~l~~lp~~ 118 (562)
T 3a79_B 108 SHNRLQNISCC 118 (562)
T ss_dssp TTSCCCEECSC
T ss_pred CCCcCCccCcc
Confidence 99999988853
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.4e-14 Score=127.46 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=96.9
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPA 298 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~ 298 (459)
..+++|+.|++++|.+..+| . +..+++|++|++++| .+..+| .++.+++|++|++++|.+... .|.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~----------~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSD----------KIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGG----------GSC
T ss_pred hhcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcc----------cCh
Confidence 34556666777766666666 2 667777777777777 665554 466777777777777766531 122
Q ss_pred CcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCC
Q 012641 299 GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 299 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
. ++++++|++|++++|.+ ....+..++.+++|+.|+++.+. .
T Consensus 107 ~-l~~l~~L~~L~Ls~n~i------------~~~~~~~l~~l~~L~~L~L~~n~--~----------------------- 148 (197)
T 4ezg_A 107 N-LSGLTSLTLLDISHSAH------------DDSILTKINTLPKVNSIDLSYNG--A----------------------- 148 (197)
T ss_dssp C-CTTCTTCCEEECCSSBC------------BGGGHHHHTTCSSCCEEECCSCT--B-----------------------
T ss_pred h-hcCCCCCCEEEecCCcc------------CcHhHHHHhhCCCCCEEEccCCC--C-----------------------
Confidence 3 66777777777777765 33456666777777777664321 0
Q ss_pred CCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeeccc
Q 012641 379 LSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKD 431 (459)
Q Consensus 379 l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~ 431 (459)
+..++ +...+++|++|++++|.+..++.+..+++|++|++++
T Consensus 149 i~~~~-----------~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 149 ITDIM-----------PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCCCG-----------GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred ccccH-----------hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence 00000 0123678888888888888887888888888888887
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.3e-14 Score=137.32 Aligned_cols=161 Identities=18% Similarity=0.223 Sum_probs=129.6
Q ss_pred CccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i 289 (459)
.+..+ .....+++|+.|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.+..+|.
T Consensus 35 ~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 107 (291)
T 1h6t_A 35 SVTDA-VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-- 107 (291)
T ss_dssp CTTSE-ECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG--
T ss_pred Ccccc-cchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh--
Confidence 34433 344567899999999999888865 899999999999999 9999987 9999999999999999988764
Q ss_pred HHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhh
Q 012641 290 KKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCV 369 (459)
Q Consensus 290 ~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L 369 (459)
+.++++|++|++++|.+.. +..+..+++|+.|+++.+....+
T Consensus 108 -----------l~~l~~L~~L~L~~n~i~~--------------~~~l~~l~~L~~L~l~~n~l~~~------------- 149 (291)
T 1h6t_A 108 -----------LKDLKKLKSLSLEHNGISD--------------INGLVHLPQLESLYLGNNKITDI------------- 149 (291)
T ss_dssp -----------GTTCTTCCEEECTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCC-------------
T ss_pred -----------hccCCCCCEEECCCCcCCC--------------ChhhcCCCCCCEEEccCCcCCcc-------------
Confidence 8899999999999998732 35688889999988853321111
Q ss_pred hhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhcc
Q 012641 370 RRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 370 ~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.. ...+++|+.|++++|.+..++.+..+++|++|+++++ .++.++.
T Consensus 150 ----------~~--------------l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 150 ----------TV--------------LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp ----------GG--------------GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGG
T ss_pred ----------hh--------------hccCCCCCEEEccCCccccchhhcCCCccCEEECCCC-cCCCChh
Confidence 00 1237899999999999999888999999999999984 6666644
No 77
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.54 E-value=9.6e-15 Score=152.27 Aligned_cols=139 Identities=22% Similarity=0.266 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCC-C----CCCcccchhhhhhhhcCCCchhHHHH
Q 012641 17 IRELAETVADMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSG-F----EGMGTRVFPLLKFSYDRLTSETHKTC 91 (459)
Q Consensus 17 ~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~-~----~~~~~~i~~~l~~sy~~L~~~~lk~c 91 (459)
..+.+.+|+++|+|+||||+++|+.|+.+ ...|+.+++.+...... . ......+..++..||+.||+ ..|.|
T Consensus 306 ~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~ 382 (591)
T 1z6t_A 306 LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDY 382 (591)
T ss_dssp SCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHH
T ss_pred ccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHH
Confidence 34678999999999999999999999873 35899999988765432 1 11223688999999999999 69999
Q ss_pred hhhhcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEeehHHHHHHHHHHH
Q 012641 92 FLYCSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKMHDILRDMALWIA 171 (459)
Q Consensus 92 fl~~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~hdli~~l~~~~~ 171 (459)
|+++|+||+++.|+.+.++.+|.++ .+.+..++++|++++|++... ++....|+||+++++++....
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~-~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDR-NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEE-ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEec-CCCccEEEEcHHHHHHHHhhh
Confidence 9999999999999999999999653 234678899999999998543 233557999999999998773
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=153.91 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=94.8
Q ss_pred cccccccceEEEeecCCCcccc-CCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-cccc--ccC
Q 012641 193 ETASWNEAVRVSLWRSPSIDSL-SPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVG--EGE 268 (459)
Q Consensus 193 ~~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~--i~~ 268 (459)
.....++++.|.+.++.....+ |..+.++++|++|++++|.+..++++.|+++++|++|+|++| .+.. +|.. ++.
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc
Confidence 4456788999999998555566 467889999999999999998886666999999999999999 8875 5655 899
Q ss_pred CCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 269 LIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
+++|++|++++|.+..++. +.. +++|++|++|++++|.+.
T Consensus 122 L~~L~~L~Ls~N~l~~~~~---------~~~-~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYL---------HPS-FGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CSSCCEEEEESCCCCCCCC---------CGG-GGTCSSCCEEEEESSCCC
T ss_pred cCCCCEEECCCCccccccc---------chh-HhhCCCCCEEECCCCcCC
Confidence 9999999999999887631 123 788999999999888763
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=3.3e-14 Score=138.28 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=80.7
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccc-cccchhHHhcCCCccE-EEccCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMI-KEFENKFFQSMHALRV-LDSSQN 256 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~Lr~-L~L~~~ 256 (459)
.+.+.+..++.+|... ..+++.|.+.+| .++.+|+ .+.++++|++|++++|.+ ..+|...|.++.+++. +.+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3455666777777533 357889999999 8988874 468899999999999975 5577777888887765 566677
Q ss_pred CCcccc-cccccCCCCCCEEEcCCCCCcccCH
Q 012641 257 AKLSKL-HVGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 257 ~~i~~l-P~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
.+..+ |..++.+++|++|++++|.+..+|.
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 91 -NLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp -TCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred -cccccCchhhhhccccccccccccccccCCc
Confidence 88888 4567889999999999998887764
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.53 E-value=6.1e-14 Score=145.31 Aligned_cols=201 Identities=15% Similarity=0.087 Sum_probs=131.6
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccc--hhHHhcCCCccEEEccCCCCcccccccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFE--NKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 275 (459)
..++.+.+.++ .+... .....+++|++|++++|.+..++ +..+..+++|++|++++| .+..+|..++.+++|++|
T Consensus 325 ~~L~~L~l~~n-~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L 401 (570)
T 2z63_A 325 KSLKRLTFTSN-KGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 401 (570)
T ss_dssp SSCCEEEEESC-BSCCB-CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred cccCEEeCcCC-ccccc-cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEE
Confidence 44555555554 33322 12256677777777777665442 233777788888888888 777777667778888888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhh
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDS 355 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 355 (459)
++++|.+..++ |...+.++++|++|++++|.. ....+..+..+++|+.|++..+....
T Consensus 402 ~l~~n~l~~~~----------~~~~~~~l~~L~~L~l~~n~l------------~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 402 DFQHSNLKQMS----------EFSVFLSLRNLIYLDISHTHT------------RVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp ECTTSEEESCT----------TSCTTTTCTTCCEEECTTSCC------------EECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred EccCCcccccc----------chhhhhcCCCCCEEeCcCCcc------------cccchhhhhcCCcCcEEECcCCcCcc
Confidence 88887766542 212278899999999999886 44566778889999999886432210
Q ss_pred hhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 356 LNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 356 ~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
..++........|+.|+++.+.+..+. +.++ ..+++|++|++++|.++.+|. +..+++|++|++++++
T Consensus 460 -~~~p~~~~~l~~L~~L~l~~n~l~~~~-------~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 460 -NFLPDIFTELRNLTFLDLSQCQLEQLS-------PTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -GEECSCCTTCTTCCEEECTTSCCCEEC-------TTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccchhhhhcccCCCEEECCCCccccCC-------hhhh--hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 112222222334566666555443331 2222 247899999999998888774 7889999999999844
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.6e-13 Score=126.93 Aligned_cols=145 Identities=19% Similarity=0.246 Sum_probs=119.3
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+..+..+|.... ..++.|.+.++ .+..++ ..+..+++|++|++++|.+..+++..+..+++|++|++++| .
T Consensus 18 ~l~~~~~~l~~~p~~~~-~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 94 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP-ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-Q 94 (251)
T ss_dssp EEECTTCCCSSCCSCCC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred EEecCCCCccccCCCCC-CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-c
Confidence 45556666777765433 68999999999 888876 45788999999999999999988888999999999999999 9
Q ss_pred ccccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+| ..++.+++|++|++++|.++.+|.. .+.++++|++|++++|.+ ....+..+
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~Ls~N~l------------~~~~~~~~ 151 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-----------VFDRLTKLKELRLNTNQL------------QSIPAGAF 151 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChh-----------HhccCCcccEEECcCCcC------------CccCHHHc
Confidence 99886 4568999999999999999887643 278999999999999987 33334467
Q ss_pred hccccCceeEEEE
Q 012641 338 ESLKHLQEISVII 350 (459)
Q Consensus 338 ~~L~~L~~L~l~~ 350 (459)
+.+++|+.|+++.
T Consensus 152 ~~l~~L~~L~L~~ 164 (251)
T 3m19_A 152 DKLTNLQTLSLST 164 (251)
T ss_dssp TTCTTCCEEECCS
T ss_pred CcCcCCCEEECCC
Confidence 8888899888853
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=1.2e-13 Score=144.78 Aligned_cols=42 Identities=14% Similarity=0.005 Sum_probs=33.2
Q ss_pred cccCccEEEEecCCCCCCcc--cccCCCcceeecccCcchhhhcc
Q 012641 398 FSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 398 ~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~~l~~i~~ 440 (459)
.+++|++|+|++|+++.++. ++.+++|++|++++ +++..++.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 559 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKK 559 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCS
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC-CcCCCCCH
Confidence 47888899998888887764 67888899999887 56766665
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.52 E-value=4.4e-14 Score=145.76 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=100.5
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-cc---ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCC
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LH---VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIP 297 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP---~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp 297 (459)
.+|+.|.+.+|.+..+|..++..+++|++|++++| .+.. +| ..++.+++|++|++++|.++.+|..-..
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------ 382 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI------ 382 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH------
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhh------
Confidence 56788888888777888776677888888888888 6654 33 3367788888888888888776531111
Q ss_pred CCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCC
Q 012641 298 AGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLP 377 (459)
Q Consensus 298 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~ 377 (459)
+..+++|++|++++|.+. ..+..++.+++|+.|+++.+....+ +.. ....|+.|+++.+
T Consensus 383 ---~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~~~~L~~L~Ls~N~l~~l---~~~--~~~~L~~L~Ls~N 441 (549)
T 2z81_A 383 ---LLTLKNLTSLDISRNTFH-------------PMPDSCQWPEKMRFLNLSSTGIRVV---KTC--IPQTLEVLDVSNN 441 (549)
T ss_dssp ---GGGCTTCCEEECTTCCCC-------------CCCSCCCCCTTCCEEECTTSCCSCC---CTT--SCTTCSEEECCSS
T ss_pred ---hhcCCCCCEEECCCCCCc-------------cCChhhcccccccEEECCCCCcccc---cch--hcCCceEEECCCC
Confidence 445566666666666542 2333445555555555543322211 110 0123444444333
Q ss_pred CCCCc-------cccCcccc-CCccC-cccccCccEEEEecCCCCCCcc--cccCCCcceeecccCc
Q 012641 378 ELSSL-------IDISSSSL-TTMMK-GHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 378 ~l~~l-------~~~~l~~~-~~~i~-~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~c~ 433 (459)
.++.+ +.+++.+. -..+| ...+++|+.|+|++|.++.+++ ++.+++|++|++++++
T Consensus 442 ~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 442 NLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 33221 11111110 00011 1235666666666665555543 5666666666666644
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=4.7e-14 Score=149.53 Aligned_cols=187 Identities=17% Similarity=0.094 Sum_probs=92.7
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc-ccc-ccccCCCCCCEEEcCCCCCcccCH-HHHHh------
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS-KLH-VGEGELIDLQYLNLSNTNICELPI-GIKKN------ 292 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~-~lP-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L------ 292 (459)
++|+.|++++|.+..+++..+..+++|++|++++| .+. .+| ..++.+++|++|++++|.+..++. .+..+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 34555555555555444444555555555555555 443 233 344555555555555555443321 11111
Q ss_pred ---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhh--h-
Q 012641 293 ---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKL--K- 360 (459)
Q Consensus 293 ---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l--~- 360 (459)
+..+|.. +.++++|++|++++|.+ ....+..+..+++|+.|+++.+....+... +
T Consensus 460 ~l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l------------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNI------------ANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp ECTTSCCBCTTCSSCT-TTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hhccccccccccCCcc-cccCCCCCEEECCCCCC------------CcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 1234555 77777777777777765 223344566777777777765443322110 0
Q ss_pred ---cchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCCcceeeccc
Q 012641 361 ---SSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPRLRFLFAKD 431 (459)
Q Consensus 361 ---~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~L~~L~l~~ 431 (459)
........|+.|+++.+.+..++...+ ..+++|+.|++++|.++.+|. +..+++|+.|++++
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~---------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVF---------KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCHHHc---------ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 001112335555554444433321111 225556666666665555553 44556666666655
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=7e-15 Score=137.12 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=59.3
Q ss_pred ccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCC
Q 012641 194 TASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQ 273 (459)
Q Consensus 194 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~ 273 (459)
...+++++.+.+.++ .+..+ +.+..+++|++|++++|.+..+++ +..+++|++|++++| .++.+|.... .+|+
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SSCC
T ss_pred hhhcCcCcEEECcCC-Ccccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--Cccc
Confidence 334455666666666 55555 345555666666666665555554 556666666666666 5555554222 5666
Q ss_pred EEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 274 YLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 274 ~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+|++++|.++.+|. +.++++|++|++++|.+
T Consensus 110 ~L~L~~N~l~~~~~-------------l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 110 RLFLDNNELRDTDS-------------LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp EEECCSSCCSBSGG-------------GTTCTTCCEEECTTSCC
T ss_pred EEEccCCccCCChh-------------hcCcccccEEECCCCcC
Confidence 66666666555432 55566666666666554
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=6.6e-14 Score=140.94 Aligned_cols=219 Identities=16% Similarity=0.092 Sum_probs=133.3
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
++++.+.+.+| .+..+| .+..+++|++|++++|.+..+|.. ..+|++|++++| .++.+| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEEC
Confidence 57788888888 777774 677888888888888877777653 358888888888 888887 5888899999999
Q ss_pred CCCCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC------CCCCc-cccchhhhhccc
Q 012641 278 SNTNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS------SVPGV-TVLLLEELESLK 341 (459)
Q Consensus 278 ~~~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~------~~~~~-~~~~~~~l~~L~ 341 (459)
++|.+..+|.....| +..+|. ++++++|++|++++|.+...+... ++... ....+. .++
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~---~~~ 277 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE---LPQ 277 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC---CCT
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc---ccC
Confidence 998888776544444 567774 888999999999888765421100 00000 000000 123
Q ss_pred cCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC-------ccccCcccc-CCccCcccccCccEEEEecCCCC
Q 012641 342 HLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS-------LIDISSSSL-TTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 342 ~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~-------l~~~~l~~~-~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
+|+.|+++.+....+..+ ...++.|+++.+.+.. |..+++... -..++ ..+++|+.|++++|.++
T Consensus 278 ~L~~L~ls~N~l~~l~~~------~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp-~~~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-ALPPRLERLIASFNHLA 350 (454)
T ss_dssp TCCEEECCSSCCSEESCC------CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCS
T ss_pred cCCEEECcCCccCcccCc------CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc-ccCCcCCEEECCCCccc
Confidence 455555543322221111 1234555554333322 222222221 11122 23578888888888777
Q ss_pred CCcccccCCCcceeecccCcchhhhc
Q 012641 414 DLTCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 414 ~lp~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
.+|. .+++|++|++++ +.+..++
T Consensus 351 ~lp~--~l~~L~~L~L~~-N~l~~l~ 373 (454)
T 1jl5_A 351 EVPE--LPQNLKQLHVEY-NPLREFP 373 (454)
T ss_dssp CCCC--CCTTCCEEECCS-SCCSSCC
T ss_pred cccc--hhhhccEEECCC-CCCCcCC
Confidence 7777 478888888887 4555543
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=1.6e-14 Score=146.81 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=120.5
Q ss_pred EEEecCCCccccc--cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQ--ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+..+...+ ....+++++.|.+.+| .+...++ +..+++|++|++++|.+..+|.. ++|++|++++|
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~~N- 109 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANN- 109 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECCSS-
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC-----CCcCEEECcCC-
Confidence 3444444444443 3456678888888888 7776533 77888888888888877666532 56666666666
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccCH-HHHHh------------hhh-CCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELPI-GIKKN------------LKA-IPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L------------l~~-lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
.+..+|.. .+++|++|++++|.+..++. .++.+ +.. .|..+..++++|++|++++|.+..
T Consensus 110 ~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---- 183 (487)
T 3oja_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---- 183 (487)
T ss_dssp CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE----
T ss_pred cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc----
Confidence 66655432 34566666666666655422 11111 000 112211245556666665555421
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCcc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQ 403 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~ 403 (459)
......+++|+.|+++.+.... ++........|+.|+++.+.+..+ |.++ ..+++|+
T Consensus 184 ----------~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~l--------p~~l--~~l~~L~ 240 (487)
T 3oja_A 184 ----------VKGQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNKLVLI--------EKAL--RFSQNLE 240 (487)
T ss_dssp ----------EECCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSCCCEE--------CTTC--CCCTTCC
T ss_pred ----------ccccccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCcCccc--------chhh--ccCCCCC
Confidence 1122245666666665433222 111112223455555544444332 2232 3478999
Q ss_pred EEEEecCCCC--CCcc-cccCCCcceeeccc
Q 012641 404 DLSIINCSIK--DLTC-ILYIPRLRFLFAKD 431 (459)
Q Consensus 404 ~L~L~~~~l~--~lp~-l~~l~~L~~L~l~~ 431 (459)
.|++++|.+. .+|. ++.++.|+.|++..
T Consensus 241 ~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp EEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 9999999665 5553 78899999888864
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=1.1e-14 Score=139.68 Aligned_cols=206 Identities=11% Similarity=0.065 Sum_probs=124.8
Q ss_pred EEEecCCCccccc--cccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQ--ETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+......+ .....++++.|.+.+| .+..++ .+..+++|++|++++|.+..++. +++|++|++++|
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n- 109 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN- 109 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEE-EETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS-
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcch-hhhhcCCCCEEECcCCccccccC-----CCCcCEEECCCC-
Confidence 3444444444443 3455678888888888 777663 37788888888888887766653 378888888888
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
.+..+|.. .+++|++|++++|.+..++.. . ++++++|++|++++|.+ ....+..+
T Consensus 110 ~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~----------~-~~~l~~L~~L~Ls~N~l------------~~~~~~~~ 164 (317)
T 3o53_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDL----------D-EGCRSRVQYLDLKLNEI------------DTVNFAEL 164 (317)
T ss_dssp CCSEEEEC--CCSSCEEEECCSSCCCSGGGB----------C-TGGGSSEEEEECTTSCC------------CEEEGGGG
T ss_pred ccCCcCcc--ccCCCCEEECCCCCCCCccch----------h-hhccCCCCEEECCCCCC------------CcccHHHH
Confidence 77777643 367788888888887766431 2 56677777777777765 22233344
Q ss_pred -hccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc
Q 012641 338 -ESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT 416 (459)
Q Consensus 338 -~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp 416 (459)
..+++|+.|+++.+....+ +.... ...|+.|+++.+.+..+.. .+ ..+++|++|++++|.++.+|
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~---~~~~~-l~~L~~L~Ls~N~l~~l~~--------~~--~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV---KGQVV-FAKLKTLDLSSNKLAFMGP--------EF--QSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE---ECCCC-CTTCCEEECCSSCCCEECG--------GG--GGGTTCSEEECTTSCCCEEC
T ss_pred hhccCcCCEEECCCCcCccc---ccccc-cccCCEEECCCCcCCcchh--------hh--cccCcccEEECcCCcccchh
Confidence 3567777777654333222 11111 2345555555554443311 11 22566666666666555555
Q ss_pred c-cccCCCcceeecccC
Q 012641 417 C-ILYIPRLRFLFAKDC 432 (459)
Q Consensus 417 ~-l~~l~~L~~L~l~~c 432 (459)
. +..+++|++|+++++
T Consensus 231 ~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTCCCCTTCCEEECTTC
T ss_pred hHhhcCCCCCEEEccCC
Confidence 4 556666666666653
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=5.7e-14 Score=132.89 Aligned_cols=193 Identities=17% Similarity=0.099 Sum_probs=142.4
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+..+..+|... .+.++.|.+.+| .+..++ ..+..+++|++|++++|.+..++. ...+++|++|++++| .
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~ 88 (290)
T 1p9a_G 14 EVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-Q 88 (290)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-C
T ss_pred EEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-c
Confidence 3445556666666433 268999999999 887764 567889999999999999888876 478999999999999 9
Q ss_pred cccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 259 LSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 259 i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
+..+|..+..+++|++|++++|.++.+|. +.+.++++|++|++++|.+. ......+.
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----------~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~ 145 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPL-----------GALRGLGELQELYLKGNELK------------TLPPGLLT 145 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSCCCCCCS-----------STTTTCTTCCEEECTTSCCC------------CCCTTTTT
T ss_pred CCcCchhhccCCCCCEEECCCCcCcccCH-----------HHHcCCCCCCEEECCCCCCC------------ccChhhcc
Confidence 99999999999999999999999987753 23889999999999999873 33344567
Q ss_pred ccccCceeEEEEeChhhhhhhhcc-hhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCC
Q 012641 339 SLKHLQEISVIILTLDSLNKLKSS-SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIK 413 (459)
Q Consensus 339 ~L~~L~~L~l~~~~~~~~~~l~~~-~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~ 413 (459)
.+++|+.|+++.+... .++.. ......|+.|+++.+.++.++ ..+. ..++|+.|+|++|.+.
T Consensus 146 ~l~~L~~L~L~~N~l~---~l~~~~~~~l~~L~~L~L~~N~l~~ip--------~~~~--~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSLYTIP--------KGFF--GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSCCS---CCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTT--TTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCcCC---ccCHHHhcCcCCCCEEECCCCcCCccC--------hhhc--ccccCCeEEeCCCCcc
Confidence 8899999988654333 22221 122234666666666665442 2222 2568999999988443
No 90
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=1.1e-13 Score=139.31 Aligned_cols=180 Identities=18% Similarity=0.079 Sum_probs=104.4
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~ 260 (459)
+...+..+..+|.. .++++.+.+.++ .+..+|. .+++|++|++++|.+..++.. .++|++|++++| .++
T Consensus 76 L~l~~~~l~~lp~~--~~~L~~L~l~~n-~l~~lp~---~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~ 144 (454)
T 1jl5_A 76 LELNNLGLSSLPEL--PPHLESLVASCN-SLTELPE---LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLE 144 (454)
T ss_dssp EECTTSCCSCCCSC--CTTCSEEECCSS-CCSSCCC---CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCS
T ss_pred EEecCCccccCCCC--cCCCCEEEccCC-cCCcccc---ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCC
Confidence 33344444444432 256777777777 6666642 236677777777766555431 156777777777 666
Q ss_pred cccccccCCCCCCEEEcCCCCCcccCHHHHHh---------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCC------C
Q 012641 261 KLHVGEGELIDLQYLNLSNTNICELPIGIKKN---------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGS------S 325 (459)
Q Consensus 261 ~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~------~ 325 (459)
.+| +++.+++|++|++++|.++.+|..+..| +..+| . ++++++|++|++++|.+...+... +
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~ 221 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNNSLKKLPDLPLSLESIV 221 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCCcCCcCCCCcCcccEEE
Confidence 676 4777777777777777766666554444 45566 3 888889999998888775432110 1
Q ss_pred CCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCC
Q 012641 326 VPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELS 380 (459)
Q Consensus 326 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~ 380 (459)
+....-..+..++.+++|+.|+++.+....+. .. ...|+.|+++.+.+.
T Consensus 222 l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~---~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 222 AGNNILEELPELQNLPFLTTIYADNNLLKTLP---DL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC---SC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCcccccCCCCCCCEEECCCCcCCccc---cc---ccccCEEECCCCccc
Confidence 11111112224777888888888654333322 11 134666666544443
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.8e-14 Score=149.75 Aligned_cols=188 Identities=18% Similarity=0.141 Sum_probs=146.8
Q ss_pred EEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCC
Q 012641 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNI 282 (459)
Q Consensus 203 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l 282 (459)
+.+..+ .+..+ .....+++|+.|.+++|.+..++. +..+++|+.|+|++| .+..+|. ++.+++|++|+|++|.+
T Consensus 26 l~l~~~-~i~~~-~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKK-SVTDA-VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCS-CTTSE-ECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HhccCC-Ccccc-cchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCC
Confidence 334434 44444 445678899999999999888875 899999999999999 9999987 99999999999999999
Q ss_pred cccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcc
Q 012641 283 CELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSS 362 (459)
Q Consensus 283 ~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~ 362 (459)
..+|. +.++++|++|++++|.+. .+..+..|++|+.|+++.+....+..+
T Consensus 100 ~~l~~-------------l~~l~~L~~L~Ls~N~l~--------------~l~~l~~l~~L~~L~Ls~N~l~~l~~l--- 149 (605)
T 1m9s_A 100 KDLSS-------------LKDLKKLKSLSLEHNGIS--------------DINGLVHLPQLESLYLGNNKITDITVL--- 149 (605)
T ss_dssp CCCTT-------------STTCTTCCEEECTTSCCC--------------CCGGGGGCTTCSEEECCSSCCCCCGGG---
T ss_pred CCChh-------------hccCCCCCEEEecCCCCC--------------CCccccCCCccCEEECCCCccCCchhh---
Confidence 87653 899999999999999873 235688999999999976654444222
Q ss_pred hhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCcceeecccCcchhhhc
Q 012641 363 SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRLRFLFAKDCPSLEEII 439 (459)
Q Consensus 363 ~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L~~L~l~~c~~l~~i~ 439 (459)
....+|+.|+++.+.+..+.. ...+++|+.|+|++|.+..+|.+..+++|+.|+|++|+ +...|
T Consensus 150 -~~l~~L~~L~Ls~N~l~~~~~-----------l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 150 -SRLTKLDTLSLEDNQISDIVP-----------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp -GSCTTCSEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE-EECCC
T ss_pred -cccCCCCEEECcCCcCCCchh-----------hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc-CcCCc
Confidence 222356777776666554421 23589999999999999999999999999999999854 44433
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=5.6e-14 Score=147.26 Aligned_cols=148 Identities=18% Similarity=0.122 Sum_probs=125.1
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+-+.+.+++.+|..- ...+++|.+++| .++.++ ..+.++++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 111 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-c
Confidence 3446667788887533 257999999999 999987 46889999999999999999999988999999999999999 9
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+|. .++.+.+|++|++++|+++.+|. ..+++|++|++|++++|.+. ....+..+
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-----------~~~~~L~~L~~L~Ls~N~l~-----------~~~~~~~~ 169 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLEN-----------FPIGHLKTLKELNVAHNLIQ-----------SFKLPEYF 169 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTT-----------CCCTTCTTCCEEECCSSCCC-----------CCCCCGGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCCh-----------hhhhcCcccCeeccccCccc-----------cCCCchhh
Confidence 999975 57999999999999999988764 23899999999999999873 23456778
Q ss_pred hccccCceeEEEEeC
Q 012641 338 ESLKHLQEISVIILT 352 (459)
Q Consensus 338 ~~L~~L~~L~l~~~~ 352 (459)
+.+++|+.|++..+.
T Consensus 170 ~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGCTTCCEEECCSSC
T ss_pred ccchhhhhhcccCcc
Confidence 899999999987543
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=3.3e-14 Score=137.27 Aligned_cols=200 Identities=17% Similarity=0.099 Sum_probs=135.7
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccc--cchhHHhcCCCccEEEccCCCCcc-cccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKE--FENKFFQSMHALRVLDSSQNAKLS-KLHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~i~-~lP~~i~~L~~L~~ 274 (459)
..++.+.+.++ .+...++....+++|++|++++|.+.. ++. .+..+++|++|++++| .+. ..|..++.+++|++
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCE
Confidence 46788888888 777766777788999999999997653 443 4888999999999999 776 56788889999999
Q ss_pred EEcCCC-CCcc--cCHHHHHhhhhCCCCcCCCCCCCCEeeecCC-CCCCcCCCCCCCCccccchhhhhccc-cCceeEEE
Q 012641 275 LNLSNT-NICE--LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLK-HLQEISVI 349 (459)
Q Consensus 275 L~l~~~-~l~~--lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~ 349 (459)
|++++| .+.. +|.. +.++++|++|++++| .+. ....+..+..++ +|+.|++.
T Consensus 147 L~L~~~~~l~~~~l~~~------------~~~~~~L~~L~l~~~~~l~-----------~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTL------------LSSCSRLDELNLSWCFDFT-----------EKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp EECTTCBSCCHHHHHHH------------HHHCTTCCEEECCCCTTCC-----------HHHHHHHHHHSCTTCCEEECC
T ss_pred EECCCCCCCCHHHHHHH------------HhcCCCCCEEcCCCCCCcC-----------hHHHHHHHHhcccCCCEEEeC
Confidence 999998 6663 4432 566788999999988 652 223466678888 99999887
Q ss_pred EeChh-hhhhhhcchhHHhhhhhhhccCCC-CCCccccCccccCCccCcccccCccEEEEecC-CCCC--CcccccCCCc
Q 012641 350 ILTLD-SLNKLKSSSKLQSCVRRQVMGLPE-LSSLIDISSSSLTTMMKGHFSQNLQDLSIINC-SIKD--LTCILYIPRL 424 (459)
Q Consensus 350 ~~~~~-~~~~l~~~~~l~~~L~~L~l~~~~-l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~--lp~l~~l~~L 424 (459)
.+... .-..++.......+|+.|+++.+. ++.-. +..+ ..+++|++|++++| .... +..++.+++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-------FQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-------GGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-------HHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 54210 002222222233456666664433 22110 1111 24688888888888 3332 2246778888
Q ss_pred ceeecccC
Q 012641 425 RFLFAKDC 432 (459)
Q Consensus 425 ~~L~l~~c 432 (459)
++|++++|
T Consensus 275 ~~L~l~~~ 282 (336)
T 2ast_B 275 KTLQVFGI 282 (336)
T ss_dssp CEEECTTS
T ss_pred CEEeccCc
Confidence 88888887
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=3.8e-13 Score=121.85 Aligned_cols=119 Identities=23% Similarity=0.332 Sum_probs=63.5
Q ss_pred EEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcCCCC
Q 012641 203 VSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTN 281 (459)
Q Consensus 203 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~ 281 (459)
+...++ .+..+|..+. ++|+.|++++|.+..+++..|..+++|++|+|++| .+..+ |..++.+++|++|++++|.
T Consensus 16 v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 344444 4555543332 45566666666555555544555666666666666 55554 4555666666666666665
Q ss_pred CcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEE
Q 012641 282 ICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISV 348 (459)
Q Consensus 282 l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 348 (459)
++.+|.+ ++.++++|++|++++|.+ ....+..+..+++|+.|++
T Consensus 92 l~~l~~~-----------~f~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 92 ITELPKS-----------LFEGLFSLQLLLLNANKI------------NCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CCCCCTT-----------TTTTCTTCCEEECCSSCC------------CCCCTTTTTTCTTCCEEEC
T ss_pred CCccCHh-----------HccCCCCCCEEECCCCCC------------CEeCHHHcCCCCCCCEEEC
Confidence 5554432 145556666666665554 2223344555555555555
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=2.5e-13 Score=132.70 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=110.1
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHh-cCCCccEEEccCCCCccccc-ccccCCCCCCEEEcC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQ-SMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLS 278 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~ 278 (459)
+.+...++ .+..+|..+. +.++.|++++|.+..++...+. .+.+|++|+|++| .+..+| ..++.+++|++|+|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 35666666 6777754433 4577788888877777776566 7788888888888 777775 457778888888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
+|.+..+|.. .+.++++|++|++++|.+ ....+..+..+++|+.|+++.+....
T Consensus 97 ~N~l~~~~~~-----------~~~~l~~L~~L~L~~N~i------------~~~~~~~~~~l~~L~~L~L~~N~l~~--- 150 (361)
T 2xot_A 97 SNHLHTLDEF-----------LFSDLQALEVLLLYNNHI------------VVVDRNAFEDMAQLQKLYLSQNQISR--- 150 (361)
T ss_dssp SSCCCEECTT-----------TTTTCTTCCEEECCSSCC------------CEECTTTTTTCTTCCEEECCSSCCCS---
T ss_pred CCcCCcCCHH-----------HhCCCcCCCEEECCCCcc------------cEECHHHhCCcccCCEEECCCCcCCe---
Confidence 8877766532 267788888888888776 33345566777777777764332111
Q ss_pred hhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc--cccCCC--cceeeccc
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC--ILYIPR--LRFLFAKD 431 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~--l~~l~~--L~~L~l~~ 431 (459)
+....+.. ...+++|+.|+|++|.++.+|. +..++. |+.|++.+
T Consensus 151 -----------------------l~~~~~~~------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 151 -----------------------FPVELIKD------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp -----------------------CCGGGTC----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred -----------------------eCHHHhcC------cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 10000000 0236677777777777777763 566665 36677766
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=3.5e-13 Score=120.85 Aligned_cols=84 Identities=27% Similarity=0.388 Sum_probs=42.7
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCc
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGM 300 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~ 300 (459)
++|++|++++|.+..+++..+..+++|++|++++| .++.+|.. ++.+++|++|++++|.+..+|.. .
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~ 95 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG-----------V 95 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------T
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHh-----------H
Confidence 34555555555555555544455555555555555 55555432 34555555555555555444321 1
Q ss_pred CCCCCCCCEeeecCCCC
Q 012641 301 LSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 301 i~~L~~L~~L~l~~~~~ 317 (459)
+.++++|++|++++|.+
T Consensus 96 ~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQL 112 (208)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred hcCccCCCEEEcCCCcC
Confidence 44555555555555544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=3.1e-13 Score=139.01 Aligned_cols=182 Identities=19% Similarity=0.141 Sum_probs=124.4
Q ss_pred cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcC
Q 012641 199 EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 278 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~ 278 (459)
+++.|.+.++ .+..+|..+ +++|++|++++|.+..+| ..+++|++|++++| .++.+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 6777888888 777776544 377888888888877777 34678888888888 8888887 665 88888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
+|.++.+|. .+++|++|++++|.+.. .+. .+++|+.|+++.+....+..
T Consensus 129 ~N~l~~lp~---------------~l~~L~~L~Ls~N~l~~-------------lp~---~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 129 NNQLTMLPE---------------LPALLEYINADNNQLTM-------------LPE---LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp SSCCSCCCC---------------CCTTCCEEECCSSCCSC-------------CCC---CCTTCCEEECCSSCCSCCCC
T ss_pred CCcCCCCCC---------------cCccccEEeCCCCccCc-------------CCC---cCCCcCEEECCCCCCCCcch
Confidence 888776652 46778888888887632 222 46778888876554433322
Q ss_pred hhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCcc-cccCCCcceeecccCcc
Q 012641 359 LKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTC-ILYIPRLRFLFAKDCPS 434 (459)
Q Consensus 359 l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~-l~~l~~L~~L~l~~c~~ 434 (459)
. ..+|+.|+++.+.++.++. +.. .+ ....+.|+.|+|++|.++.+|. +..+++|++|+|++++-
T Consensus 178 ---l---~~~L~~L~Ls~N~L~~lp~--~~~---~L-~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 178 ---L---PESLEALDVSTNLLESLPA--VPV---RN-HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ---C---CTTCCEEECCSSCCSSCCC--CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ---h---hCCCCEEECcCCCCCchhh--HHH---hh-hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 1 1567777777776665532 110 00 0112334999999998889986 77899999999998553
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=1.8e-13 Score=133.15 Aligned_cols=209 Identities=12% Similarity=0.047 Sum_probs=135.0
Q ss_pred EEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc-ccccc-cccCCCCCCE-EEcC
Q 012641 202 RVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL-SKLHV-GEGELIDLQY-LNLS 278 (459)
Q Consensus 202 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i-~~lP~-~i~~L~~L~~-L~l~ 278 (459)
.+.-.++ .++++|..+ .++++.|++++|.+..+|+..|.++++|++|+|++| .+ +.+|. .+..+.+|++ +.++
T Consensus 13 ~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhccc
Confidence 4555666 788887555 368999999999999999888999999999999999 76 45664 5688888876 5566
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhh
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNK 358 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 358 (459)
+|++..+|. +++.++++|++|++++|.+... .........++..|++. +...+..
T Consensus 89 ~N~l~~l~~-----------~~f~~l~~L~~L~l~~n~l~~~------------~~~~~~~~~~l~~l~l~--~~~~i~~ 143 (350)
T 4ay9_X 89 ANNLLYINP-----------EAFQNLPNLQYLLISNTGIKHL------------PDVHKIHSLQKVLLDIQ--DNINIHT 143 (350)
T ss_dssp ETTCCEECT-----------TSBCCCTTCCEEEEEEECCSSC------------CCCTTCCBSSCEEEEEE--SCTTCCE
T ss_pred CCcccccCc-----------hhhhhccccccccccccccccC------------Cchhhcccchhhhhhhc--ccccccc
Confidence 788887754 2389999999999999987431 11122223334444443 2222222
Q ss_pred hhcc--hhHHhhhhhhhccCCCCCCccc----------cCccc--cCCccCc---ccccCccEEEEecCCCCCCcccccC
Q 012641 359 LKSS--SKLQSCVRRQVMGLPELSSLID----------ISSSS--LTTMMKG---HFSQNLQDLSIINCSIKDLTCILYI 421 (459)
Q Consensus 359 l~~~--~~l~~~L~~L~l~~~~l~~l~~----------~~l~~--~~~~i~~---~~l~~L~~L~L~~~~l~~lp~l~~l 421 (459)
++.. ..+...++.|.++.+.++.+.. +.+.. .-..++. ..+++|+.|++++|.++.+|. +.+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhh
Confidence 1111 1111224445555554444322 11111 1112222 347889999999998888875 337
Q ss_pred CCcceeecccCcchhhhcc
Q 012641 422 PRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 422 ~~L~~L~l~~c~~l~~i~~ 440 (459)
.+|+.|.+.++.+++.+|.
T Consensus 223 ~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp TTCCEEECTTCTTCCCCCC
T ss_pred ccchHhhhccCCCcCcCCC
Confidence 7888888888888888886
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=132.41 Aligned_cols=210 Identities=10% Similarity=0.042 Sum_probs=142.3
Q ss_pred ccceEEEeecCCCccccC----CCCCCCCcceeeeeecccccccchhHH--hcCCCccEEEccCCCCcccc-c----ccc
Q 012641 198 NEAVRVSLWRSPSIDSLS----PTPPCCPRLLTLLVRYTMIKEFENKFF--QSMHALRVLDSSQNAKLSKL-H----VGE 266 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~i~~l-P----~~i 266 (459)
..++++.+... .+.... .....+++|+.|++++|.+....+..+ ..+++|++|++++| .+... | ..+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHh
Confidence 34677777665 443210 112234669999999998765444335 88999999999999 77752 2 345
Q ss_pred cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc--hhhhhccccCc
Q 012641 267 GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL--LEELESLKHLQ 344 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~ 344 (459)
..+++|++|++++|.+..+|. .. ++++++|++|++++|.+.. .... ...++.+++|+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~----------~~-~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~~~~l~~L~ 200 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSC----------EQ-VRAFPALTSLDLSDNPGLG----------ERGLMAALCPHKFPAIQ 200 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCT----------TS-CCCCTTCCEEECCSCTTCH----------HHHHHTTSCTTSSCCCC
T ss_pred hhccCCCEEEeeCCCcchhhH----------HH-hccCCCCCEEECCCCCCcc----------chhhhHHHhhhcCCCCC
Confidence 679999999999999877653 23 8899999999999997521 1111 12236789999
Q ss_pred eeEEEEeChhhhhhhhcc-hhHHhhhhhhhccCCCCCCccccCccccCCccCc-ccccCccEEEEecCCCCCCcc-cccC
Q 012641 345 EISVIILTLDSLNKLKSS-SKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKG-HFSQNLQDLSIINCSIKDLTC-ILYI 421 (459)
Q Consensus 345 ~L~l~~~~~~~~~~l~~~-~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~-~~l~~L~~L~L~~~~l~~lp~-l~~l 421 (459)
.|+++.+....+...... ......|+.|+++.+.+..+. |..+.. ..+++|++|++++|.++.+|. + .
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~ 271 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-------NPSAPRCMWSSALNSLNLSFAGLEQVPKGL--P 271 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-------CSCCSSCCCCTTCCCEECCSSCCCSCCSCC--C
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-------hhhHHhccCcCcCCEEECCCCCCCchhhhh--c
Confidence 999987655444333221 123346778888777765441 111111 224799999999998888886 4 4
Q ss_pred CCcceeecccCcchhhhcc
Q 012641 422 PRLRFLFAKDCPSLEEIIA 440 (459)
Q Consensus 422 ~~L~~L~l~~c~~l~~i~~ 440 (459)
++|++|++++ ++++.++.
T Consensus 272 ~~L~~L~Ls~-N~l~~~~~ 289 (310)
T 4glp_A 272 AKLRVLDLSS-NRLNRAPQ 289 (310)
T ss_dssp SCCSCEECCS-CCCCSCCC
T ss_pred CCCCEEECCC-CcCCCCch
Confidence 8999999998 56776654
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=5.6e-13 Score=120.67 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=121.3
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
.+...+..+..+|.... ..++.|.+.+| .+..+++ .+..+++|+.|++++|.+..+++..|..+++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 34556666777765332 68999999999 9998864 6788999999999999999887777999999999999999 9
Q ss_pred ccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
++.+|.. +..+++|++|++++|.+..++. .. +.++++|++|++++|.+. ......+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l~------------~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV----------DA-FQDLHNLNLLSLYDNKLQ------------TIAKGTF 148 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------TT-TTTCTTCCEEECCSSCCS------------CCCTTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH----------HH-cCCCCCCCEEECCCCcCC------------EECHHHH
Confidence 9999876 5889999999999999988743 23 899999999999999873 3344567
Q ss_pred hccccCceeEEEEe
Q 012641 338 ESLKHLQEISVIIL 351 (459)
Q Consensus 338 ~~L~~L~~L~l~~~ 351 (459)
..+++|+.|++..+
T Consensus 149 ~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 149 SPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hCCCCCCEEEeCCC
Confidence 88999999998654
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=8.5e-13 Score=120.28 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=115.2
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+.+.+..+..+|... ..+++.|.+.+| .+..++ ..+..+++|++|++++|.+..+|...|..+++|++|+|++| .+
T Consensus 24 v~c~~~~l~~ip~~~-~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI-PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred eEccCCCcCccCCCC-CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence 444555666666533 278999999999 888774 55778999999999999999998887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
+.+|.. ++.+.+|++|++++|.+..+|.+ +.++++|++|++++|.+. ......+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~------------~~~l~~L~~L~L~~N~l~------------~~~~~~~~ 156 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRG------------IERLTHLTHLALDQNQLK------------SIPHGAFD 156 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTT------------GGGCTTCSEEECCSSCCC------------CCCTTTTT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcc------------cccCCCCCEEECCCCcCC------------ccCHHHHh
Confidence 888755 58899999999999998877653 778899999999999873 23335677
Q ss_pred ccccCceeEEEEe
Q 012641 339 SLKHLQEISVIIL 351 (459)
Q Consensus 339 ~L~~L~~L~l~~~ 351 (459)
.+++|+.|++..+
T Consensus 157 ~l~~L~~L~l~~N 169 (229)
T 3e6j_A 157 RLSSLTHAYLFGN 169 (229)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEEeeCC
Confidence 8889998888643
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=2.3e-12 Score=117.35 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=101.1
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~ 279 (459)
..+...++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. ++.+++|++|++++
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 45777777 7888865444 89999999999999887777999999999999999 99999754 58999999999999
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
|.++.+|.. .+..+++|++|++++|.+. ..+..+..+++|+.|+++.
T Consensus 98 N~l~~l~~~-----------~~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 98 NQLTVLPSA-----------VFDRLVHLKELFMCCNKLT-------------ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp SCCCCCCTT-----------TTTTCTTCCEEECCSSCCC-------------SCCTTGGGCTTCSEEECCS
T ss_pred CcCCccChh-----------HhCcchhhCeEeccCCccc-------------ccCcccccCCCCCEEECCC
Confidence 999887643 2789999999999999863 3566778888888888753
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=7.4e-13 Score=123.32 Aligned_cols=170 Identities=16% Similarity=0.112 Sum_probs=124.8
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
.++.++.+..+ .+.++ +.+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++
T Consensus 19 ~~l~~l~l~~~-~i~~~-~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQ-SVTDL-VSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCS-CTTSE-ECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCC-Ccccc-cchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 34555556666 67766 466778899999999998888873 889999999999999 8998887 899999999999
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhh
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLN 357 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 357 (459)
++|.++.+|. +.. .+|++|++++|.+.. +..++.+++|+.|+++.+....+.
T Consensus 93 ~~N~l~~l~~-------------~~~-~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 93 NRNRLKNLNG-------------IPS-ACLSRLFLDNNELRD--------------TDSLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp CSSCCSCCTT-------------CCC-SSCCEEECCSSCCSB--------------SGGGTTCTTCCEEECTTSCCCBCG
T ss_pred CCCccCCcCc-------------ccc-CcccEEEccCCccCC--------------ChhhcCcccccEEECCCCcCCCCh
Confidence 9999888764 444 899999999988632 246888999999998655444332
Q ss_pred hhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEecCCCCCCc
Q 012641 358 KLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLT 416 (459)
Q Consensus 358 ~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp 416 (459)
. ......|+.|+++.+.+..+. . ...+++|+.|++++|.+...|
T Consensus 145 ~----l~~l~~L~~L~L~~N~i~~~~---------~--l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 145 M----LGFLSKLEVLDLHGNEITNTG---------G--LTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp G----GGGCTTCCEEECTTSCCCBCT---------T--STTCCCCCEEEEEEEEEECCC
T ss_pred H----HccCCCCCEEECCCCcCcchH---------H--hccCCCCCEEeCCCCcccCCc
Confidence 2 122345677777666655441 1 134788999999998655544
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=117.75 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=116.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC--CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCC
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP--TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAK 258 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 258 (459)
+...+..+..+|... ...++.|.+.+| .+..+++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .
T Consensus 16 l~~s~n~l~~iP~~~-~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~ 92 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI-PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-R 92 (220)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred eEeCCCCcccCccCC-CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-c
Confidence 444555666666422 356789999999 8888743 3678999999999999999888877999999999999999 8
Q ss_pred cccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhh
Q 012641 259 LSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 337 (459)
Q Consensus 259 i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 337 (459)
+..+|. .++.+++|++|++++|.+..++. .. +.++++|++|++++|.+ ....+..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l------------~~~~~~~~ 149 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGN----------DS-FIGLSSVRLLSLYDNQI------------TTVAPGAF 149 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCT----------TS-STTCTTCSEEECTTSCC------------CCBCTTTT
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECH----------hH-cCCCccCCEEECCCCcC------------CEECHHHh
Confidence 888865 48899999999999999887742 23 88999999999999987 44456788
Q ss_pred hccccCceeEEEEe
Q 012641 338 ESLKHLQEISVIIL 351 (459)
Q Consensus 338 ~~L~~L~~L~l~~~ 351 (459)
..+++|+.|++..+
T Consensus 150 ~~l~~L~~L~L~~N 163 (220)
T 2v70_A 150 DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCCEEECCSC
T ss_pred cCCCCCCEEEecCc
Confidence 88999999998654
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=4.5e-14 Score=139.18 Aligned_cols=215 Identities=15% Similarity=0.108 Sum_probs=115.4
Q ss_pred ccceEEEeecCCCcccc-----CCCCCCCCcceeeeeeccccc----ccchhH------HhcCCCccEEEccCCCCccc-
Q 012641 198 NEAVRVSLWRSPSIDSL-----SPTPPCCPRLLTLLVRYTMIK----EFENKF------FQSMHALRVLDSSQNAKLSK- 261 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~----~~~~~~------~~~l~~Lr~L~L~~~~~i~~- 261 (459)
+.++.|.+.++ .+... +..+..+++|++|++++|.+. .+|..+ +..+++|++|+|++| .+..
T Consensus 32 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT 109 (386)
T ss_dssp SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTT
T ss_pred CCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHH
Confidence 56777888777 65542 234567788888888776433 233332 367788888888888 6665
Q ss_pred ----ccccccCCCCCCEEEcCCCCCcccC-HHHHHhhhhCCCCcCCCC---------CCCCEeeecCCCCCCcCCCCCCC
Q 012641 262 ----LHVGEGELIDLQYLNLSNTNICELP-IGIKKNLKAIPAGMLSSL---------LSLRVFSWVPTRYAGFNYGSSVP 327 (459)
Q Consensus 262 ----lP~~i~~L~~L~~L~l~~~~l~~lp-~~i~~Ll~~lp~~~i~~L---------~~L~~L~l~~~~~~~~~~~~~~~ 327 (459)
+|..+..+++|++|++++|.+...+ ..+... +..+ ++|++|++++|.+..
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--------l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------- 173 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------LQELAVNKKAKNAPPLRSIICGRNRLEN-------- 173 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------HHHHHHHHHHHTCCCCCEEECCSSCCTG--------
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--------HHHHhhhhhcccCCCCcEEECCCCCCCc--------
Confidence 6777777888888888888775321 122211 1112 556666666655420
Q ss_pred Cccccch---hhhhccccCceeEEEEeChh--hhhhhhc-chhHHhhhhhhhccCCCC---------------CCccccC
Q 012641 328 GVTVLLL---EELESLKHLQEISVIILTLD--SLNKLKS-SSKLQSCVRRQVMGLPEL---------------SSLIDIS 386 (459)
Q Consensus 328 ~~~~~~~---~~l~~L~~L~~L~l~~~~~~--~~~~l~~-~~~l~~~L~~L~l~~~~l---------------~~l~~~~ 386 (459)
...+ ..+..+++|+.|++..+... .+..+.. .......|+.|+++.+.+ ++|..++
T Consensus 174 ---~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 174 ---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp ---GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred ---HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 1111 34444555555555433222 1111111 111122344444433322 1222222
Q ss_pred cccc----------CCccCcccccCccEEEEecCCCCC-----Ccc-c-ccCCCcceeecccCc
Q 012641 387 SSSL----------TTMMKGHFSQNLQDLSIINCSIKD-----LTC-I-LYIPRLRFLFAKDCP 433 (459)
Q Consensus 387 l~~~----------~~~i~~~~l~~L~~L~L~~~~l~~-----lp~-l-~~l~~L~~L~l~~c~ 433 (459)
+... +.++....+++|++|+|++|.+.. +|. + ..+++|++|++++|+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2221 111111237888999998887766 664 4 568889999988753
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=3.1e-12 Score=115.75 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=98.5
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeeccccccc-chhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEF-ENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLS 278 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~ 278 (459)
+.+.+.++ .++.+|..+. +.++.|++++|.+..+ +..+|..+++|++|++++| .++.+|. .++.+.+|++|+++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 46888888 8888865443 4568999999988877 4455889999999999999 8988865 78999999999999
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
+|.+..+|.. .+.++++|++|++++|.+ ....+..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~-----------~~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 90 SNRLENVQHK-----------MFKGLESLKTLMLRSNRI------------TCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp SSCCCCCCGG-----------GGTTCSSCCEEECTTSCC------------CCBCTTSSTTCTTCSEEECT
T ss_pred CCccCccCHh-----------HhcCCcCCCEEECCCCcC------------CeECHhHcCCCccCCEEECC
Confidence 9999887653 278899999999999987 33445677788888888774
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=2.5e-12 Score=115.20 Aligned_cols=145 Identities=21% Similarity=0.194 Sum_probs=117.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCCC-CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT-PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.+...+|... .++++.|.+.++ .+..+++. +..+++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus 12 v~c~~~~l~~~p~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI-PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccCCCCCC-CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cC
Confidence 444555555555332 368999999999 88888643 678999999999999999999887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 338 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (459)
+.+|.. ++.+++|++|++++|.+..+|.. .+.++++|++|++++|.+. ......+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~l~------------~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDG-----------VFDKLTQLKDLRLYQNQLK------------SVPDGVFD 145 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------TTTTCTTCCEEECCSSCCS------------CCCTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHh-----------HhccCCcCCEEECCCCccc------------eeCHHHhc
Confidence 998765 68999999999999999877642 2789999999999999873 23334577
Q ss_pred ccccCceeEEEEe
Q 012641 339 SLKHLQEISVIIL 351 (459)
Q Consensus 339 ~L~~L~~L~l~~~ 351 (459)
.+++|+.|++..+
T Consensus 146 ~l~~L~~L~l~~N 158 (208)
T 2o6s_A 146 RLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSC
T ss_pred cCCCccEEEecCC
Confidence 8899999988643
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=2.6e-12 Score=114.17 Aligned_cols=125 Identities=11% Similarity=0.146 Sum_probs=78.8
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-ccccccCCCCCCEE
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVGEGELIDLQYL 275 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~L 275 (459)
++.++.+.+.++ .+..++ .+..+++|++|++++|.+..++. +..+++|++|++++| .+.. .|..++.+++|++|
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 456677777777 666663 56667777777777775555542 667777777777777 6654 46667777777777
Q ss_pred EcCCCCCcc-cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC-CCCcCCCCCCCCccccchhhhhccccCceeEEEEeC
Q 012641 276 NLSNTNICE-LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR-YAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILT 352 (459)
Q Consensus 276 ~l~~~~l~~-lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 352 (459)
++++|.+.. .|.. ++++++|++|++++|. .. .+..+..+++|+.|+++.+.
T Consensus 118 ~Ls~n~i~~~~~~~------------l~~l~~L~~L~L~~n~~i~--------------~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 118 DISHSAHDDSILTK------------INTLPKVNSIDLSYNGAIT--------------DIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp ECCSSBCBGGGHHH------------HTTCSSCCEEECCSCTBCC--------------CCGGGGGCSSCCEEECTTBC
T ss_pred EecCCccCcHhHHH------------HhhCCCCCEEEccCCCCcc--------------ccHhhcCCCCCCEEECCCCC
Confidence 777776664 2222 5566677777776665 31 11246666666666665433
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=8.6e-14 Score=134.33 Aligned_cols=199 Identities=14% Similarity=0.135 Sum_probs=137.8
Q ss_pred ceEEEeecCCCccccCCCCCCC--CcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc--ccccccCCCCCCEE
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCC--PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK--LHVGEGELIDLQYL 275 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~--lP~~i~~L~~L~~L 275 (459)
.+++.+.++ .+.. ..+..+ ++++.|.+.+|.+...++. +..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 49 ~~~l~l~~~-~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEE
Confidence 556666665 4431 223344 7899999999988777766 668999999999999 7764 78889999999999
Q ss_pred EcCCCCCc-ccCHHHHHhhhhCCCCcCCCCCCCCEeeecCC-CCCCcCCCCCCCCccccchhhhhccccCceeEEEEe-C
Q 012641 276 NLSNTNIC-ELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL-T 352 (459)
Q Consensus 276 ~l~~~~l~-~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~ 352 (459)
++++|.+. ..|.. ++++++|++|++++| .+. ....+..+.++++|+.|++..+ .
T Consensus 124 ~L~~~~l~~~~~~~------------l~~~~~L~~L~L~~~~~l~-----------~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 124 SLEGLRLSDPIVNT------------LAKNSNLVRLNLSGCSGFS-----------EFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp ECTTCBCCHHHHHH------------HTTCTTCSEEECTTCBSCC-----------HHHHHHHHHHCTTCCEEECCCCTT
T ss_pred eCcCcccCHHHHHH------------HhcCCCCCEEECCCCCCCC-----------HHHHHHHHhcCCCCCEEcCCCCCC
Confidence 99999876 33332 778999999999999 441 2235566889999999999765 3
Q ss_pred hhhhhhhhcchhHHh-hhhhhhccCCC--CCCccccCccccCCccCcccccCccEEEEecCC-CCC--CcccccCCCcce
Q 012641 353 LDSLNKLKSSSKLQS-CVRRQVMGLPE--LSSLIDISSSSLTTMMKGHFSQNLQDLSIINCS-IKD--LTCILYIPRLRF 426 (459)
Q Consensus 353 ~~~~~~l~~~~~l~~-~L~~L~l~~~~--l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~-l~~--lp~l~~l~~L~~ 426 (459)
.... .+........ +|+.|+++.+. +..- ..+.. ...+++|++|++++|. ++. ++.++.+++|++
T Consensus 181 l~~~-~~~~~~~~l~~~L~~L~l~~~~~~~~~~------~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 181 FTEK-HVQVAVAHVSETITQLNLSGYRKNLQKS------DLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp CCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHH------HHHHH--HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred cChH-HHHHHHHhcccCCCEEEeCCCcccCCHH------HHHHH--HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 3321 1222222223 56666664432 2100 00111 1348899999999995 543 456889999999
Q ss_pred eecccCcch
Q 012641 427 LFAKDCPSL 435 (459)
Q Consensus 427 L~l~~c~~l 435 (459)
|++++|..+
T Consensus 252 L~l~~~~~~ 260 (336)
T 2ast_B 252 LSLSRCYDI 260 (336)
T ss_dssp EECTTCTTC
T ss_pred eeCCCCCCC
Confidence 999998744
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1e-12 Score=113.48 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=101.8
Q ss_pred ccceEEEeecCCCcc--ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-ccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSID--SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~ 274 (459)
++++.|.+.++ .+. .+|..+..+++|++|++++|.+..+ . .+..+++|++|++++| .+.. +|..++.+++|++
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-NLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-SCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-hhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 57889999998 777 7766678889999999999988777 3 3888999999999999 8887 6777777999999
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch---hhhhccccCceeEEEEe
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL---EELESLKHLQEISVIIL 351 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~~~ 351 (459)
|++++|.++.+|. + .. +.++++|++|++++|.+.. ... ..+..+++|+.|++..+
T Consensus 100 L~Ls~N~l~~~~~--------~-~~-l~~l~~L~~L~l~~N~l~~------------~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLKDIST--------L-EP-LKKLECLKSLDLFNCEVTN------------LNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCCSSGG--------G-GG-GSSCSCCCEEECCSSGGGT------------STTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccCcchh--------H-HH-HhcCCCCCEEEeeCCcCcc------------hHHHHHHHHHhCccCcEecCCCC
Confidence 9999998887752 0 12 7888999999999887632 222 46788888998888754
Q ss_pred C
Q 012641 352 T 352 (459)
Q Consensus 352 ~ 352 (459)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 3
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1e-12 Score=111.13 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=103.9
Q ss_pred ccceEEEeecCCCcc--ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccc-ccccccCCCCCCE
Q 012641 198 NEAVRVSLWRSPSID--SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSK-LHVGEGELIDLQY 274 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~-lP~~i~~L~~L~~ 274 (459)
++++.+.+.++ .+. .+|..+..+++|++|++++|.+..+ . .++.+++|++|++++| .+.. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-A-NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T-TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-h-hhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 67999999999 887 7877778999999999999988877 3 3899999999999999 8887 7888888999999
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccch---hhhhccccCceeEE
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL---EELESLKHLQEISV 348 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l 348 (459)
|++++|.++.+|. |.. ++++++|++|++++|.+. .... ..++.+++|+.|++
T Consensus 93 L~ls~N~i~~~~~---------~~~-~~~l~~L~~L~l~~N~l~------------~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLST---------IEP-LKKLENLKSLDLFNCEVT------------NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHH---------HGG-GGGCTTCCEEECTTCGGG------------GSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHH---------HHH-HhhCCCCCEEeCcCCccc------------chHHHHHHHHHHCCCcccccC
Confidence 9999999987652 112 788999999999999863 2222 46888899998865
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=1.9e-12 Score=127.57 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=122.6
Q ss_pred ccccCCCCCCCCcceeeeeecccccccchhH----HhcCCCccEEEccCCCCcc----cccccc-------cCCCCCCEE
Q 012641 211 IDSLSPTPPCCPRLLTLLVRYTMIKEFENKF----FQSMHALRVLDSSQNAKLS----KLHVGE-------GELIDLQYL 275 (459)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~Lr~L~L~~~~~i~----~lP~~i-------~~L~~L~~L 275 (459)
+..++..+..+++|++|++++|.+....... +..+++|++|+|++| .+. .+|..+ ..+++|++|
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3334344566789999999999776543322 668999999999997 554 335444 789999999
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccc----hhhhhcc---------cc
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL----LEELESL---------KH 342 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~L---------~~ 342 (459)
++++|.+..-- ...+|.. +.++++|++|++++|.+ .... ...+..+ ++
T Consensus 100 ~Ls~n~l~~~~------~~~l~~~-l~~~~~L~~L~L~~n~l------------~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 100 RLSDNAFGPTA------QEPLIDF-LSKHTPLEHLYLHNNGL------------GPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp ECCSCCCCTTT------HHHHHHH-HHHCTTCCEEECCSSCC------------HHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ECCCCcCCHHH------HHHHHHH-HHhCCCCCEEECcCCCC------------CHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 99999887510 0112222 66789999999999987 3222 3334445 89
Q ss_pred CceeEEEEeChh--hhhhhhcchhHHhhhhhhhccCCCCC----------------CccccCccccC------CccCc--
Q 012641 343 LQEISVIILTLD--SLNKLKSSSKLQSCVRRQVMGLPELS----------------SLIDISSSSLT------TMMKG-- 396 (459)
Q Consensus 343 L~~L~l~~~~~~--~~~~l~~~~~l~~~L~~L~l~~~~l~----------------~l~~~~l~~~~------~~i~~-- 396 (459)
|+.|+++.+... .+..+.........|+.|.++.+.+. .|..+++.... ..++.
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 999999765543 33333333333446777777555543 22222222210 00111
Q ss_pred ccccCccEEEEecCCCCCC-----c-cc--ccCCCcceeecccC
Q 012641 397 HFSQNLQDLSIINCSIKDL-----T-CI--LYIPRLRFLFAKDC 432 (459)
Q Consensus 397 ~~l~~L~~L~L~~~~l~~l-----p-~l--~~l~~L~~L~l~~c 432 (459)
..+++|++|+|++|.+... + .+ +.+++|++|+|++|
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 2356677777777655443 2 23 33667777777764
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=9.4e-12 Score=110.05 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=92.1
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchh-HHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENK-FFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLS 278 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~ 278 (459)
+.+.+.++ .++.+|..+.. +|++|++++|.+..+++. ++..+++|++|+|++| .++.+ |..++.+.+|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 45677777 77777654433 788888888887777753 4778888888888888 77777 6778888888888888
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
+|.++.+|. .. +.++++|++|++++|.+ ....+..+..+++|+.|++..+
T Consensus 87 ~N~l~~~~~----------~~-~~~l~~L~~L~L~~N~l------------~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISN----------KM-FLGLHQLKTLNLYDNQI------------SCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECS----------SS-STTCTTCCEEECCSSCC------------CEECTTSSTTCTTCCEEECTTC
T ss_pred CCcCCccCH----------HH-hcCCCCCCEEECCCCcC------------CeeCHHHhhcCCCCCEEEeCCC
Confidence 888876643 22 77888888888888876 4445667777888888877543
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=6.4e-12 Score=109.43 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=106.9
Q ss_pred cccccceEEEeecCCCccccCCCCCCCC-cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccc-cCCCCC
Q 012641 195 ASWNEAVRVSLWRSPSIDSLSPTPPCCP-RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGE-GELIDL 272 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i-~~L~~L 272 (459)
....+++.+.+.++ .+..+ +.+..+. +|++|++++|.+..++ . +..+++|++|++++| .+..+|..+ +.+++|
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVI-ENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSC-CCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCC-CCchh-HHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 34468999999999 88888 4555554 9999999999888873 3 899999999999999 999998766 899999
Q ss_pred CEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchh----hhhccccCceeEE
Q 012641 273 QYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE----ELESLKHLQEISV 348 (459)
Q Consensus 273 ~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~~L~l 348 (459)
++|++++|.+..+|. +. . +.++++|++|++++|.+.. .+. .+..+++|+.|++
T Consensus 91 ~~L~L~~N~i~~~~~--------~~-~-l~~l~~L~~L~l~~N~i~~-------------~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 91 TELILTNNSLVELGD--------LD-P-LASLKSLTYLCILRNPVTN-------------KKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CEEECCSCCCCCGGG--------GG-G-GGGCTTCCEEECCSSGGGG-------------STTHHHHHHHHCTTCSEETT
T ss_pred CEEECCCCcCCcchh--------hH-h-hhcCCCCCEEEecCCCCCC-------------cHhHHHHHHHHCCccceeCC
Confidence 999999999988775 00 1 7789999999999998632 233 4888999999998
Q ss_pred EEeChh
Q 012641 349 IILTLD 354 (459)
Q Consensus 349 ~~~~~~ 354 (459)
..+...
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 765443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.4e-11 Score=120.10 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=110.7
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCC-CC-CCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT-PP-CCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+..+..+|... ...++.|.+.+| .+..+++. +. .+++|++|++++|.+..+++..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN- 98 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-
Confidence 4555666677776532 356889999999 88888644 44 8999999999999999888877999999999999999
Q ss_pred Ccccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhh
Q 012641 258 KLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE 336 (459)
Q Consensus 258 ~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 336 (459)
.+..+|. .+..+.+|++|+|++|.+..++. .. +.++++|++|++++|.+..+ .......
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----------~~-~~~l~~L~~L~L~~N~l~~l---------~~~~~~~ 158 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR----------NA-FEDMAQLQKLYLSQNQISRF---------PVELIKD 158 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECT----------TT-TTTCTTCCEEECCSSCCCSC---------CGGGTC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECH----------HH-hCCcccCCEEECCCCcCCee---------CHHHhcC
Confidence 8988865 57899999999999999887642 22 77888888888888876321 0111112
Q ss_pred hhccccCceeEEEEeCh
Q 012641 337 LESLKHLQEISVIILTL 353 (459)
Q Consensus 337 l~~L~~L~~L~l~~~~~ 353 (459)
+..+++|+.|+++.+..
T Consensus 159 ~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 159 GNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp ---CTTCCEEECCSSCC
T ss_pred cccCCcCCEEECCCCCC
Confidence 25677888887765443
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=7.3e-12 Score=128.81 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=122.3
Q ss_pred CcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcC
Q 012641 222 PRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGML 301 (459)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i 301 (459)
.+|+.|++++|.+..+|..+ +++|++|++++| .++.+| +.+++|++|++++|.++.+|. +
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-------------l 118 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-------------L 118 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-------------C
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-------------h
Confidence 37899999999998898863 389999999999 999999 568999999999999988764 4
Q ss_pred CCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC
Q 012641 302 SSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS 381 (459)
Q Consensus 302 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~ 381 (459)
.+ +|++|++++|.+.. .+. .+++|+.|+++.+.... ++. ...+|+.|+++.+.+..
T Consensus 119 ~~--~L~~L~Ls~N~l~~-------------lp~---~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-------------LPE---LPALLEYINADNNQLTM---LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CT--TCCEEECCSSCCSC-------------CCC---CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSC
T ss_pred hc--CCCEEECCCCcCCC-------------CCC---cCccccEEeCCCCccCc---CCC---cCCCcCEEECCCCCCCC
Confidence 44 99999999998732 333 58899999997654443 332 23467778887777655
Q ss_pred ccccCccccCCccCcccccCccEEEEecCCCCCCcccccCCCc-------ceeecccCcchhhhcc
Q 012641 382 LIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDLTCILYIPRL-------RFLFAKDCPSLEEIIA 440 (459)
Q Consensus 382 l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~lp~l~~l~~L-------~~L~l~~c~~l~~i~~ 440 (459)
++ . + .++|+.|+|++|.++.+|.+.. +| ++|++++ ++++.||.
T Consensus 175 lp--------~-l----~~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~ 224 (571)
T 3cvr_A 175 LP--------E-L----PESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRE-NRITHIPE 224 (571)
T ss_dssp CC--------C-C----CTTCCEEECCSSCCSSCCCCC----------CCEEEECCS-SCCCCCCG
T ss_pred cc--------h-h----hCCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCC-CcceecCH
Confidence 42 2 1 2799999999998889887433 77 9999998 67887776
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=1.1e-11 Score=104.64 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=73.9
Q ss_pred CCccEEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCC
Q 012641 246 HALRVLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYG 323 (459)
Q Consensus 246 ~~Lr~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 323 (459)
++|+.|++++| .+. .+|..++.+++|++|++++|.+..++ . ++++++|++|++++|.+
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~-~~~l~~L~~L~Ls~n~i------ 76 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSIA------------N-LPKLNKLKKLELSDNRV------ 76 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCCT------------T-CCCCTTCCEEECCSSCC------
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCch------------h-hhcCCCCCEEECCCCcc------
Confidence 45666666666 665 56666666666777777666665542 1 66666777777766665
Q ss_pred CCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCcc
Q 012641 324 SSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQ 403 (459)
Q Consensus 324 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~ 403 (459)
....+..++.+++|+.|+++.+....+... . . ...+++|+
T Consensus 77 ------~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~-------~-------------------------~--~~~l~~L~ 116 (149)
T 2je0_A 77 ------SGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-------E-------------------------P--LKKLENLK 116 (149)
T ss_dssp ------CSCTHHHHHHCTTCCEEECTTSCCCSHHHH-------G-------------------------G--GGGCTTCC
T ss_pred ------cchHHHHhhhCCCCCEEECCCCcCCChHHH-------H-------------------------H--HhhCCCCC
Confidence 222444555566666666642211111000 0 0 02267788
Q ss_pred EEEEecCCCCCCcc-----cccCCCcceeecc
Q 012641 404 DLSIINCSIKDLTC-----ILYIPRLRFLFAK 430 (459)
Q Consensus 404 ~L~L~~~~l~~lp~-----l~~l~~L~~L~l~ 430 (459)
+|++++|.+..+|. ++.+++|++|+++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888886666654 6778888888775
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.4e-11 Score=107.54 Aligned_cols=122 Identities=19% Similarity=0.219 Sum_probs=91.0
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+. ++|++|++++|.+..+|.. |..+++|++|+|++| .++.+| ..+..+.+|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 34666666 7777764443 5788888888888888854 888888888888888 888775 4578888888888888
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEE
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
|.+..+|.. . +.++++|++|++++|.+. ......+..+++|+.|++..
T Consensus 88 N~l~~i~~~----------~-f~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 88 NRLRCIPPR----------T-FDGLKSLRLLSLHGNDIS------------VVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp SCCCBCCTT----------T-TTTCTTCCEEECCSSCCC------------BCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHH----------H-hCCCCCCCEEECCCCCCC------------eeChhhhhcCccccEEEeCC
Confidence 888776532 2 788888888888888762 22334567788888888764
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.1e-11 Score=107.91 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=107.2
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
.+...+..+..+|... ...++.|.+.+| .+..+|..+..+++|++|++++|.+..+++..|..+++|++|+|++| .+
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence 3455666677776532 368999999999 99999888889999999999999999999888999999999999999 99
Q ss_pred cccc-ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 260 SKLH-VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 260 ~~lP-~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.+| ..++.+++|++|++++|.+..+|.+ ++..+++|+.|++.+|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-----------~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEG-----------AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTT-----------TTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChh-----------hhhcCccccEEEeCCCCe
Confidence 9886 4689999999999999999887653 388999999999999876
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=3.5e-12 Score=135.62 Aligned_cols=112 Identities=22% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhh
Q 012641 215 SPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLK 294 (459)
Q Consensus 215 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~ 294 (459)
+..+..+++|++|++++|.+..+|.. +..+++|++|+|++| .++.+|..++.|.+|++|+|++|.|+.+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~------- 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPA------- 287 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCS-------
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccCh-------
Confidence 35566778888888888888888877 558888888888888 888888888888888888888888876654
Q ss_pred hCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeCh
Q 012641 295 AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTL 353 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 353 (459)
. +++|++|++|++++|.+. ..+..+++|++|+.|+++.+..
T Consensus 288 ----~-~~~l~~L~~L~L~~N~l~-------------~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 288 ----E-LGSCFQLKYFYFFDNMVT-------------TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ----S-GGGGTTCSEEECCSSCCC-------------CCCSSTTSCTTCCCEECTTSCC
T ss_pred ----h-hcCCCCCCEEECCCCCCC-------------ccChhhhcCCCccEEeCCCCcc
Confidence 3 778888888888888752 3566688888888888865443
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=2.8e-12 Score=125.25 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=53.7
Q ss_pred cceEEEeecCCCccccC-----CCCCCCC-cceeeeeecccccccchhHHhcC-----CCccEEEccCCCCccccc-cc-
Q 012641 199 EAVRVSLWRSPSIDSLS-----PTPPCCP-RLLTLLVRYTMIKEFENKFFQSM-----HALRVLDSSQNAKLSKLH-VG- 265 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~-----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~i~~lP-~~- 265 (459)
.++.|.+.+| .+...+ ..+..++ +|++|++++|.+.......+..+ ++|++|++++| .++..+ ..
T Consensus 23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHH
Confidence 4777777777 666653 2334555 67777777776665544445543 77777777777 666443 22
Q ss_pred ---ccCC-CCCCEEEcCCCCCcccC
Q 012641 266 ---EGEL-IDLQYLNLSNTNICELP 286 (459)
Q Consensus 266 ---i~~L-~~L~~L~l~~~~l~~lp 286 (459)
+..+ ++|++|++++|.+...+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHH
Confidence 3333 67777777777776554
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=3.5e-11 Score=104.76 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=77.9
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+ .++|++|++++|.+..+++..+..+++|++|++++| .++.+|.. ++.+++|++|++++
T Consensus 10 ~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 34555555 566664322 256777777777776776665677777777777777 77766544 46777777777777
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEe
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 351 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 351 (459)
|.++.+|.. .+.++++|++|++++|.+. ......+..+++|+.|++..+
T Consensus 86 N~l~~~~~~-----------~~~~l~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNG-----------VFDKLTQLKELALDTNQLK------------SVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTT-----------TTTTCTTCCEEECCSSCCS------------CCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHH-----------HhhCCcccCEEECcCCcce------------EeCHHHhcCCcccCEEEecCC
Confidence 776665432 2566777777777777652 222233456677777776543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.6e-10 Score=99.61 Aligned_cols=130 Identities=20% Similarity=0.119 Sum_probs=105.7
Q ss_pred eEEEecCCCcc--ccccc-cccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccC
Q 012641 179 ILVFQETDKSI--KVQET-ASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQ 255 (459)
Q Consensus 179 ~~~~~~~~~~~--~~~~~-~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~ 255 (459)
..+...+.... .+|.. ..+++++.|.+.+| .+..+ ..+..+++|++|++++|.+...++..+..+++|++|++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 44444555555 55544 56789999999999 89888 8889999999999999988874455588899999999999
Q ss_pred CCCccccc--ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 256 NAKLSKLH--VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 256 ~~~i~~lP--~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
| .++.+| ..++.+++|++|++++|.+..+|.... ..+..+++|++|++.+|....
T Consensus 105 N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~--------~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 105 N-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE--------SVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp S-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHH--------HHHTTCSSCCEETTEETTSCB
T ss_pred C-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHH--------HHHHhCccCcEecCCCCChhh
Confidence 9 999987 789999999999999999988775110 117889999999999997643
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=7e-11 Score=104.38 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=103.8
Q ss_pred EEEecCCCccccccccccccceEEEeecCCCccccCCC--CCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 180 LVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSPT--PPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
.+...+..+..+|... ...++.|.+.++ .+..+++. +..+++|++|++++|.+..+++..|..+++|++|+|++|
T Consensus 12 ~l~~s~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 88 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred EEEcCCCCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-
Confidence 3445556666666533 248999999999 99988653 788999999999999999887766999999999999999
Q ss_pred Ccccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 258 KLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 258 ~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.++.+|. .++.+++|++|++++|.+..++ |.. +..+++|++|++++|..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~-~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVM----------PGS-FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEEC----------TTS-STTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeC----------HHH-hhcCCCCCEEEeCCCCc
Confidence 9998865 4899999999999999998763 334 89999999999999986
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=3e-11 Score=124.63 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=53.5
Q ss_pred ceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCC
Q 012641 224 LLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSS 303 (459)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~ 303 (459)
|++|++++|.+..+|. ++.+++|++|+|++| .++.+|..++.+++|++|++++|.++.+|. +++
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~-------------l~~ 506 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDG-------------VAN 506 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCGG-------------GTT
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCcc-------------cCC
Confidence 5555555555555553 555555555555555 555555555555555555555555555441 555
Q ss_pred CCCCCEeeecCCCCCCcCCCCCCCCccccc-hhhhhccccCceeEEE
Q 012641 304 LLSLRVFSWVPTRYAGFNYGSSVPGVTVLL-LEELESLKHLQEISVI 349 (459)
Q Consensus 304 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~l~ 349 (459)
|++|++|++++|.+. ... +..++.|++|+.|+++
T Consensus 507 l~~L~~L~Ls~N~l~------------~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 507 LPRLQELLLCNNRLQ------------QSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CSSCCEEECCSSCCC------------SSSTTGGGGGCTTCCEEECT
T ss_pred CCCCcEEECCCCCCC------------CCCCcHHHhcCCCCCEEEec
Confidence 555555555555542 222 4555555555555554
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1e-10 Score=101.73 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=103.1
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccCC-CCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLSP-TPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+.....+|.. ..+.++.|.+.++ .+..+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 12 l~~~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l 88 (177)
T 2o6r_A 12 IRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KL 88 (177)
T ss_dssp EECCSSCCSSCCTT-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCCccCCCC-CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-Cc
Confidence 34455556666532 2368999999999 8888864 3578999999999999999999887899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+.+|.. ++.+++|++|++++|.++.+|.. .+.++++|++|++++|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----------~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDG-----------IFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTT-----------TTTTCTTCCEEECCSSCB
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHH-----------HhcCCcccCEEEecCCCe
Confidence 998765 68999999999999999887653 268899999999999986
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=5.9e-11 Score=103.25 Aligned_cols=128 Identities=18% Similarity=0.109 Sum_probs=106.5
Q ss_pred eEEEecCCCccccccccccc-cceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWN-EAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~-~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
..+...+.....++...... +++.|.+.+| .+..+ +.+..+++|++|++++|.+..+|+.++..+++|++|++++|
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N- 98 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN- 98 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-
Confidence 34444555555665555555 8999999999 99988 88999999999999999999999887799999999999999
Q ss_pred Ccccccc--cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 258 KLSKLHV--GEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 258 ~i~~lP~--~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.+..+|. .++.+++|++|++++|.+..+|..-.. ++..+++|+.|++++|..
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~--------~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY--------VIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHH--------HHHHCTTCSEETTEECCH
T ss_pred cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHH--------HHHHCCccceeCCCcCCH
Confidence 9999987 899999999999999999888764111 156788999999998865
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1e-10 Score=101.63 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=89.8
Q ss_pred eEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCC
Q 012641 201 VRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSN 279 (459)
Q Consensus 201 r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~ 279 (459)
+.+.+.++ .+..+|..+. ++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. ++.+++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 56788888 8888876554 89999999999999998777999999999999999 99999876 48999999999999
Q ss_pred CCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 280 TNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 280 ~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
|.++.+|.+ .+.++++|++|++++|.+.
T Consensus 91 N~l~~l~~~-----------~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRG-----------AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTT-----------TTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHH-----------HhccccCCCEEEeCCCCcc
Confidence 999887643 3889999999999999863
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=2.2e-12 Score=130.02 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=76.2
Q ss_pred cccceEEEeecCCCccc-----cCCCCCCCCcceeeeeeccccccc-chhHHhcCC----CccEEEccCCCCcc-----c
Q 012641 197 WNEAVRVSLWRSPSIDS-----LSPTPPCCPRLLTLLVRYTMIKEF-ENKFFQSMH----ALRVLDSSQNAKLS-----K 261 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~----~Lr~L~L~~~~~i~-----~ 261 (459)
.++++.+.+.++ .+.. ++..+..+++|++|++++|.+... +..++..++ +|++|++++| .+. .
T Consensus 27 ~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred cCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHH
Confidence 356777777777 5552 233445567777777777765442 223334455 5777777777 666 4
Q ss_pred ccccccCCCCCCEEEcCCCCCccc-CHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhcc
Q 012641 262 LHVGEGELIDLQYLNLSNTNICEL-PIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 340 (459)
Q Consensus 262 lP~~i~~L~~L~~L~l~~~~l~~l-p~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L 340 (459)
+|..+..+++|++|++++|.+... +..+.. .....+++|++|++++|.+... ........+..+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~ 169 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------GLLDPQCRLEKLQLEYCSLSAA--------SCEPLASVLRAK 169 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------HHTSTTCCCCEEECTTSCCBGG--------GHHHHHHHHHHC
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHH-------HHhcCCCcceEEECCCCCCCHH--------HHHHHHHHHhhC
Confidence 566777777777777777766532 111111 1022345666666666654210 000123444555
Q ss_pred ccCceeEEEEe
Q 012641 341 KHLQEISVIIL 351 (459)
Q Consensus 341 ~~L~~L~l~~~ 351 (459)
++|+.|+++.+
T Consensus 170 ~~L~~L~L~~n 180 (461)
T 1z7x_W 170 PDFKELTVSNN 180 (461)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 66666666543
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.4e-10 Score=100.36 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=89.6
Q ss_pred ceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcC
Q 012641 200 AVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLS 278 (459)
Q Consensus 200 ~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~ 278 (459)
.+.+.+.++ .+..+|..+ .++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. ++.+++|++|+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 356888888 888887555 388999999999999998777999999999999999 99999775 5899999999999
Q ss_pred CCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 279 NTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 279 ~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+|.++.+|.+ .+.++++|++|++++|..
T Consensus 87 ~N~l~~~~~~-----------~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRG-----------AFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTT-----------TTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHH-----------HhcCCCCCCEEEeCCCCC
Confidence 9999887642 288999999999999986
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=3.1e-11 Score=128.32 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=99.5
Q ss_pred cccccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCE
Q 012641 195 ASWNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQY 274 (459)
Q Consensus 195 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~ 274 (459)
.....++.|.+.+| .+..+|..+..+++|++|++++|.+..+|.. |+.+++|++|+|++| .++.+|..++.|.+|++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence 34578999999999 8989987788999999999999999999987 899999999999999 99999999999999999
Q ss_pred EEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCC
Q 012641 275 LNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAG 319 (459)
Q Consensus 275 L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~ 319 (459)
|+|++|.+..+|. . +++|++|++|++++|.+..
T Consensus 298 L~L~~N~l~~lp~-----------~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFDNMVTTLPW-----------E-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCSSCCCCCCS-----------S-TTSCTTCCCEECTTSCCCS
T ss_pred EECCCCCCCccCh-----------h-hhcCCCccEEeCCCCccCC
Confidence 9999999887664 4 8999999999999998743
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=8.8e-12 Score=121.65 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=113.6
Q ss_pred CCCCcceeeeeecccccccch----hHHhcCC-CccEEEccCCCCcccc-cccccCC-----CCCCEEEcCCCCCcccC-
Q 012641 219 PCCPRLLTLLVRYTMIKEFEN----KFFQSMH-ALRVLDSSQNAKLSKL-HVGEGEL-----IDLQYLNLSNTNICELP- 286 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~i~~l-P~~i~~L-----~~L~~L~l~~~~l~~lp- 286 (459)
...++|++|++++|.+...+. +.+..++ +|++|+|++| .+... +..++.+ .+|++|++++|.+...+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 345569999999999888886 6688888 9999999999 88865 5556654 89999999999988654
Q ss_pred HHHHHhhhhCCCCcCCCC-CCCCEeeecCCCCCCcCCCCCCCCccccchhh----hhcc-ccCceeEEEEeChhh--hhh
Q 012641 287 IGIKKNLKAIPAGMLSSL-LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE----LESL-KHLQEISVIILTLDS--LNK 358 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~----l~~L-~~L~~L~l~~~~~~~--~~~ 358 (459)
..+... +..+ ++|++|++++|.+. ...... +..+ ++|+.|+++.+.... ...
T Consensus 98 ~~l~~~--------l~~~~~~L~~L~Ls~N~l~------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 98 DELVKT--------LAAIPFTITVLDLGWNDFS------------SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp HHHHHH--------HHTSCTTCCEEECCSSCGG------------GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HHHHHH--------HHhCCCCccEEECcCCcCC------------cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 333332 2223 46667777666652 222222 2222 456666654332221 111
Q ss_pred hhcchh-HHhhhhhhhccCCCCC----------------CccccCcccc--CC----ccCc---ccccCccEEEEecCCC
Q 012641 359 LKSSSK-LQSCVRRQVMGLPELS----------------SLIDISSSSL--TT----MMKG---HFSQNLQDLSIINCSI 412 (459)
Q Consensus 359 l~~~~~-l~~~L~~L~l~~~~l~----------------~l~~~~l~~~--~~----~i~~---~~l~~L~~L~L~~~~l 412 (459)
+..... ....|+.|+++.+.+. +|+.+++... .. .++. ...++|++|+|++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 111111 1113444444333321 2222222220 00 0111 1135899999999977
Q ss_pred CCCcc------cccCCCcceeecccCc
Q 012641 413 KDLTC------ILYIPRLRFLFAKDCP 433 (459)
Q Consensus 413 ~~lp~------l~~l~~L~~L~l~~c~ 433 (459)
...+. +..+++|++|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 66542 4677889999998854
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=2.3e-10 Score=118.09 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=98.0
Q ss_pred CCCCcceeee-eecccccccchhH-----Hhc--CCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHH
Q 012641 219 PCCPRLLTLL-VRYTMIKEFENKF-----FQS--MHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK 290 (459)
Q Consensus 219 ~~~~~L~~L~-l~~~~~~~~~~~~-----~~~--l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~ 290 (459)
..+++|+.|+ +..|.+..++.-. +.. ...|++|+|++| .++.+|. ++.+++|++|++++|.++.+|..
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~-- 481 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPA-- 481 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGG--
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchh--
Confidence 4567777777 4544332222211 111 135899999999 8988987 99999999999999988887764
Q ss_pred HhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhh
Q 012641 291 KNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVR 370 (459)
Q Consensus 291 ~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~ 370 (459)
+++|++|++|++++|.+. . .+ .+++|++|+.|+++.+....+.. +........|+
T Consensus 482 ----------~~~l~~L~~L~Ls~N~l~------------~-lp-~l~~l~~L~~L~Ls~N~l~~~~~-p~~l~~l~~L~ 536 (567)
T 1dce_A 482 ----------LAALRCLEVLQASDNALE------------N-VD-GVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLV 536 (567)
T ss_dssp ----------GGGCTTCCEEECCSSCCC------------C-CG-GGTTCSSCCEEECCSSCCCSSST-TGGGGGCTTCC
T ss_pred ----------hhcCCCCCEEECCCCCCC------------C-Cc-ccCCCCCCcEEECCCCCCCCCCC-cHHHhcCCCCC
Confidence 778899999999998863 2 34 78889999999887554333210 22223334566
Q ss_pred hhhccCCCCCCccccCccccCCccCc--ccccCccEEEE
Q 012641 371 RQVMGLPELSSLIDISSSSLTTMMKG--HFSQNLQDLSI 407 (459)
Q Consensus 371 ~L~l~~~~l~~l~~~~l~~~~~~i~~--~~l~~L~~L~L 407 (459)
.|+++.+.+..+. ..+.. ..+++|+.|++
T Consensus 537 ~L~L~~N~l~~~~--------~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQEE--------GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGGSS--------SCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCCCc--------cHHHHHHHHCcccCccCC
Confidence 6766666554432 11111 23678888753
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=1.7e-11 Score=123.42 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=104.5
Q ss_pred ccceEEEeecCCCccccC--CCCCCCCcceeeeeeccccc-----ccchhHHhcCCCccEEEccCCCCcccc-cccc-cC
Q 012641 198 NEAVRVSLWRSPSIDSLS--PTPPCCPRLLTLLVRYTMIK-----EFENKFFQSMHALRVLDSSQNAKLSKL-HVGE-GE 268 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i-~~ 268 (459)
+.++.|.+.++ .+...+ ..+..+++|++|++++|.+. .++.. +..+++|++|++++| .+... +..+ ..
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 46888999888 666543 22567889999999999766 33433 788899999999999 77653 3233 33
Q ss_pred CC----CCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhc-----
Q 012641 269 LI----DLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES----- 339 (459)
Q Consensus 269 L~----~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 339 (459)
+. +|++|++++|.+.... ...+|.. +.++++|++|++++|.+ ....+..+..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~------~~~l~~~-l~~~~~L~~L~Ls~n~i------------~~~~~~~l~~~l~~~ 140 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAG------CGVLSST-LRTLPTLQELHLSDNLL------------GDAGLQLLCEGLLDP 140 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGG------HHHHHHH-TTSCTTCCEEECCSSBC------------HHHHHHHHHHHHTST
T ss_pred HhhCCCceeEEEccCCCCCHHH------HHHHHHH-HccCCceeEEECCCCcC------------chHHHHHHHHHHhcC
Confidence 44 7999999999887432 0112333 88899999999999986 3333443333
Q ss_pred cccCceeEEEEeChhh--hhhhhcchhHHhhhhhhhccCCC
Q 012641 340 LKHLQEISVIILTLDS--LNKLKSSSKLQSCVRRQVMGLPE 378 (459)
Q Consensus 340 L~~L~~L~l~~~~~~~--~~~l~~~~~l~~~L~~L~l~~~~ 378 (459)
.++|+.|+++.+.... ...+.........|+.|+++.+.
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 5679999986543322 22233322223456777765444
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1e-11 Score=110.31 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=96.7
Q ss_pred ceeeeeecc--cccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcC
Q 012641 224 LLTLLVRYT--MIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGML 301 (459)
Q Consensus 224 L~~L~l~~~--~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i 301 (459)
++...+.++ .+..+|.. +..+++|++|++++| .+..+| .++.+++|++|++++|.+..+|.. +
T Consensus 25 l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~------------~ 89 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENL------------D 89 (198)
T ss_dssp CSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSH------------H
T ss_pred hheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccch------------h
Confidence 334444433 45566654 888888888888888 888888 788888888888888888777653 4
Q ss_pred CCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCC
Q 012641 302 SSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSS 381 (459)
Q Consensus 302 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~ 381 (459)
..+++|++|++++|.+. . +..++.+++|+.|++..+....+..+ ..+
T Consensus 90 ~~~~~L~~L~L~~N~l~------------~--l~~~~~l~~L~~L~l~~N~i~~~~~~-------~~l------------ 136 (198)
T 1ds9_A 90 AVADTLEELWISYNQIA------------S--LSGIEKLVNLRVLYMSNNKITNWGEI-------DKL------------ 136 (198)
T ss_dssp HHHHHCSEEEEEEEECC------------C--HHHHHHHHHSSEEEESEEECCCHHHH-------HHH------------
T ss_pred hcCCcCCEEECcCCcCC------------c--CCccccCCCCCEEECCCCcCCchhHH-------HHH------------
Confidence 45678888888888762 1 33677888888888865533322111 000
Q ss_pred ccccCccccCCccCcccccCccEEEEecCCCCCC-cc-----------cccCCCcceeec
Q 012641 382 LIDISSSSLTTMMKGHFSQNLQDLSIINCSIKDL-TC-----------ILYIPRLRFLFA 429 (459)
Q Consensus 382 l~~~~l~~~~~~i~~~~l~~L~~L~L~~~~l~~l-p~-----------l~~l~~L~~L~l 429 (459)
..+++|++|++++|.+... |. +..+|+|++|+-
T Consensus 137 ---------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 137 ---------------AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp ---------------TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ---------------hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 1267888888888854333 21 577888888873
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=9.9e-10 Score=95.31 Aligned_cols=111 Identities=19% Similarity=0.099 Sum_probs=94.7
Q ss_pred eEEEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 179 ILVFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
..+...+..+..+|... ...++.|.+.+| .+..++ ..+..+++|++|++++|.+..+|+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 34555666677777543 278999999999 898885 56789999999999999999999987899999999999999
Q ss_pred Cccccccc-ccCCCCCCEEEcCCCCCcccCHHHHHh
Q 012641 258 KLSKLHVG-EGELIDLQYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 258 ~i~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L 292 (459)
.+..+|.. ++.+++|++|++++|.+...|..+..+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 99999876 899999999999999999888766554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=1.6e-11 Score=109.15 Aligned_cols=105 Identities=23% Similarity=0.229 Sum_probs=53.3
Q ss_pred ccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEc
Q 012641 198 NEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 277 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l 277 (459)
+.++.|.+.+| .+..+| .+..+++|++|++++|.+..+|.. +..+++|++|++++| .+..+| .++.+++|++|++
T Consensus 48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEEC
Confidence 44555555555 555542 444455555555555555555443 444455555555555 555554 3555555555555
Q ss_pred CCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 278 SNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 278 ~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
++|.+..+|.- . . +.++++|++|++.+|.+
T Consensus 123 ~~N~i~~~~~~-~--------~-l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNKITNWGEI-D--------K-LAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEECCCHHHH-H--------H-HTTTTTCSEEEECSCHH
T ss_pred CCCcCCchhHH-H--------H-HhcCCCCCEEEecCCcc
Confidence 55555544320 0 1 44555555555555543
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=3.5e-09 Score=91.43 Aligned_cols=109 Identities=17% Similarity=0.065 Sum_probs=91.7
Q ss_pred EEecCCCccccccccccccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCc
Q 012641 181 VFQETDKSIKVQETASWNEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
+...+..+..+|... ...++.|.+.+| .+..++ ..+..+++|++|++++|.+..+|+..|..+++|++|+|++| .+
T Consensus 14 l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l 90 (170)
T 3g39_A 14 VDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QL 90 (170)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-cc
Confidence 445556667776533 378999999999 998885 55789999999999999999999988899999999999999 99
Q ss_pred cccccc-ccCCCCCCEEEcCCCCCcccCHHHHHh
Q 012641 260 SKLHVG-EGELIDLQYLNLSNTNICELPIGIKKN 292 (459)
Q Consensus 260 ~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L 292 (459)
+.+|.. ++.+++|++|++++|++...+..+..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 999764 899999999999999988776554443
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.81 E-value=5e-10 Score=116.40 Aligned_cols=141 Identities=19% Similarity=0.182 Sum_probs=89.5
Q ss_pred ccccceEEEeecCCCccc-----cCCCCCCCCcceeeeeecccccccch----hHHhcCCCccEEEccCCCCcccccccc
Q 012641 196 SWNEAVRVSLWRSPSIDS-----LSPTPPCCPRLLTLLVRYTMIKEFEN----KFFQSMHALRVLDSSQNAKLSKLHVGE 266 (459)
Q Consensus 196 ~~~~~r~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~Lr~L~L~~~~~i~~lP~~i 266 (459)
..++++.|.+.++ .+.. ++.....+++|++|++++|. ..+.. .++..+++|++|++++|..+..+|..+
T Consensus 154 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred hCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 4578888988887 5443 22233467899999998885 22222 224567999999999886677788888
Q ss_pred cCCCCCCEEEcCCCCC-------cccCHHHHHh--h-----------hhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCC
Q 012641 267 GELIDLQYLNLSNTNI-------CELPIGIKKN--L-----------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSV 326 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l-------~~lp~~i~~L--l-----------~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 326 (459)
..+++|++|+++++.. ..++..+..+ + ..+|.. +..+++|++|++++|.+.
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~-------- 302 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQ-------- 302 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG-HHHHTTCCEEECTTCCCC--------
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH-HHhhCCCCEEEccCCCCC--------
Confidence 8889999998766532 2222222221 1 112222 335688899999888752
Q ss_pred CCccccchhhhhccccCceeEEEE
Q 012641 327 PGVTVLLLEELESLKHLQEISVII 350 (459)
Q Consensus 327 ~~~~~~~~~~l~~L~~L~~L~l~~ 350 (459)
......-+.++++|+.|++..
T Consensus 303 ---~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 303 ---SYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp ---HHHHHHHHTTCTTCCEEEEEG
T ss_pred ---HHHHHHHHhcCCCcCEEeCcC
Confidence 122233356778888888864
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=9.2e-09 Score=99.43 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=76.3
Q ss_pred CccccCCCCCCCCcceeeeeec-ccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCCcccCH
Q 012641 210 SIDSLSPTPPCCPRLLTLLVRY-TMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
.+..+|. +..+++|+.|++++ |.+..+++..|..+.+|++|+|++| .+..+| ..++.|.+|++|+|++|.+..+|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4677766 88888899999986 8888888777889999999999999 888875 467889999999999998887764
Q ss_pred HHHHhhhhCCCCcCCCCCCCCEeeecCCCCC
Q 012641 288 GIKKNLKAIPAGMLSSLLSLRVFSWVPTRYA 318 (459)
Q Consensus 288 ~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~ 318 (459)
+ .+..+. |+.|++.+|.+.
T Consensus 98 ~-----------~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 K-----------TVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp T-----------TTCSCC-CCEEECCSSCCC
T ss_pred H-----------HcccCC-ceEEEeeCCCcc
Confidence 3 144454 899999888763
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.78 E-value=2e-09 Score=111.81 Aligned_cols=139 Identities=10% Similarity=-0.017 Sum_probs=80.8
Q ss_pred cccceEEEeecCCCccccC-----CCCCCCCcceeeeeecccccccc----hhHHhcCCCccEEEccCCCCccccccccc
Q 012641 197 WNEAVRVSLWRSPSIDSLS-----PTPPCCPRLLTLLVRYTMIKEFE----NKFFQSMHALRVLDSSQNAKLSKLHVGEG 267 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~ 267 (459)
.++++.|.+.++ .+.... .....+++|++|++++|.+..+. ...+..+++|++|++++| .+..+|..++
T Consensus 163 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp CTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred CCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 467777777777 443221 12235677777877777554222 222556778888888877 7777777777
Q ss_pred CCCCCCEEEcCCCCCc----ccCHHHHH------h------hhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc
Q 012641 268 ELIDLQYLNLSNTNIC----ELPIGIKK------N------LKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~----~lp~~i~~------L------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (459)
.+++|++|+++++... ..+..+.. + ...+|.. +..+++|++|++++|... ..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l~-----------~~ 308 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLE-----------TE 308 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCCC-----------HH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcEEecCCCcCC-----------HH
Confidence 7777777777643111 11111000 0 1223333 566778888888887742 22
Q ss_pred cchhhhhccccCceeEEE
Q 012641 332 LLLEELESLKHLQEISVI 349 (459)
Q Consensus 332 ~~~~~l~~L~~L~~L~l~ 349 (459)
....-+..+++|+.|++.
T Consensus 309 ~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHHhCcCCCEEecc
Confidence 223446778888888886
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.76 E-value=3.2e-09 Score=110.25 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred ccceEEEeecCCCccccC-CCCC-CCCcceeeeeecc-ccccc-chhHHhcCCCccEEEccCCCCccc-----ccccccC
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPP-CCPRLLTLLVRYT-MIKEF-ENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGE 268 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~ 268 (459)
+.++.|.+.++ .+.... ..+. .+++|++|++.+| .+... ...++..+++|++|++++| .+.. ++.....
T Consensus 105 ~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhc
Confidence 45666776666 443211 1222 4567777777666 33321 2222446677777777776 4432 2333335
Q ss_pred CCCCCEEEcCCCCCcccC-HHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 269 LIDLQYLNLSNTNICELP-IGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 269 L~~L~~L~l~~~~l~~lp-~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
+++|++|++++|. ..++ ..+..+ +.++++|++|++.+|.. ....+..+..+++|+.|+
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l--------~~~~~~L~~L~L~~~~~------------~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERL--------VTRCPNLKSLKLNRAVP------------LEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHH--------HHHCTTCCEEECCTTSC------------HHHHHHHHHHCTTCSEEE
T ss_pred CCcCcEEEecccC-CcCCHHHHHHH--------HHhCCCCcEEecCCCCc------------HHHHHHHHhcCCcceEcc
Confidence 5677777777665 2222 111110 23456777777776632 222555666677777776
Q ss_pred E
Q 012641 348 V 348 (459)
Q Consensus 348 l 348 (459)
+
T Consensus 242 l 242 (594)
T 2p1m_B 242 T 242 (594)
T ss_dssp C
T ss_pred c
Confidence 4
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=5e-08 Score=93.57 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=36.0
Q ss_pred CCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEEc
Q 012641 221 CPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLNL 277 (459)
Q Consensus 221 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l 277 (459)
|++|+.|.+.. .+..++...|.++.+|+.+++..| .+..++ ..+....++.++..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecC
Confidence 77888888777 677777777888888888888877 665553 33444444444443
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.66 E-value=7.4e-09 Score=107.52 Aligned_cols=213 Identities=12% Similarity=0.077 Sum_probs=110.6
Q ss_pred cceEEEeecCCCccc--cCCCCCCCCcceeeeeeccccccc----chhHHhcCCCccEEEccCCCCcc-----ccccccc
Q 012641 199 EAVRVSLWRSPSIDS--LSPTPPCCPRLLTLLVRYTMIKEF----ENKFFQSMHALRVLDSSQNAKLS-----KLHVGEG 267 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~i~-----~lP~~i~ 267 (459)
+++.|.+.++..+.. ++.....+++|++|++++|.+... ...++..+++|++|++++| .+. .++..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHh
Confidence 377777766621211 111123567888888887754433 1233567788888888877 654 4455566
Q ss_pred CCCCCCEEEcCCCCCcccCHHHHHh-------h---------hhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc
Q 012641 268 ELIDLQYLNLSNTNICELPIGIKKN-------L---------KAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV 331 (459)
Q Consensus 268 ~L~~L~~L~l~~~~l~~lp~~i~~L-------l---------~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 331 (459)
.+++|++|++++|.+..+|..+..+ + ...+.. +..+++|+.|.+.++. ..
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~-------------~~ 283 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMG-------------PN 283 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCCEEEETTCC-------------TT
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhccccccccCccccc-------------hh
Confidence 7788888888888777777654443 1 112222 4455555555554432 22
Q ss_pred cchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccccCccccCCccCcccccCccEEEEec--
Q 012641 332 LLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLIDISSSSLTTMMKGHFSQNLQDLSIIN-- 409 (459)
Q Consensus 332 ~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~~~l~~~~~~i~~~~l~~L~~L~L~~-- 409 (459)
..+..+..+++|+.|+++.+.... ..+........+|+.|++. +.+ .+..+ +.. ...+++|++|++++
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~-~~~---~~~~l---~~~--~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLETR-NVI---GDRGL---EVL--AQYCKQLKRLRIERGA 353 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCH-HHHHHHHTTCTTCCEEEEE-GGG---HHHHH---HHH--HHHCTTCCEEEEECCC
T ss_pred HHHHHHhhcCCCcEEecCCCcCCH-HHHHHHHHhCcCCCEEecc-Ccc---CHHHH---HHH--HHhCCCCCEEEeecCc
Confidence 344455566677777665332111 0110001111123333322 000 00000 000 03467899999994
Q ss_pred --------C-CCCC--Ccc-cccCCCcceeecccCcchhh
Q 012641 410 --------C-SIKD--LTC-ILYIPRLRFLFAKDCPSLEE 437 (459)
Q Consensus 410 --------~-~l~~--lp~-l~~l~~L~~L~l~~c~~l~~ 437 (459)
| .+.. ++. ...+++|++|++ .|+++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~ 392 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCH
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccH
Confidence 5 5443 223 355899999999 4555543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.7e-07 Score=90.52 Aligned_cols=104 Identities=15% Similarity=0.041 Sum_probs=87.9
Q ss_pred EEecCC-CccccccccccccceEEEeec-CCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCC
Q 012641 181 VFQETD-KSIKVQETASWNEAVRVSLWR-SPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNA 257 (459)
Q Consensus 181 ~~~~~~-~~~~~~~~~~~~~~r~l~l~~-~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 257 (459)
+.+.+. .+..+|......+++.|.+.+ | .+..++ ..+..+++|+.|++++|.+..+++..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 344555 677787766667899999996 8 899887 46889999999999999999999888999999999999999
Q ss_pred CcccccccccCCCCCCEEEcCCCCCcccC
Q 012641 258 KLSKLHVGEGELIDLQYLNLSNTNICELP 286 (459)
Q Consensus 258 ~i~~lP~~i~~L~~L~~L~l~~~~l~~lp 286 (459)
.+..+|..+.....|++|++.+|.+....
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 99999877655555999999999887543
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=5.4e-08 Score=93.34 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=58.7
Q ss_pred cccceEEEeecCCCccccCCCCCC-CCcceeeeeeccccc--------------------ccchhHHhc--------CCC
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPC-CPRLLTLLVRYTMIK--------------------EFENKFFQS--------MHA 247 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~ 247 (459)
+.+++.|.+.++-...++ ..+.. +++|++|++++|.+. .+|...|.+ +.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 455666666654111111 11222 566777777777555 567777888 999
Q ss_pred ccEEEccCCCCccccc-ccccCCCCCCEEEcCCCCCcccCH
Q 012641 248 LRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPI 287 (459)
Q Consensus 248 Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~l~~~~l~~lp~ 287 (459)
|+.+++.. .++.++ ..+..+.+|+.+++++|.+..++.
T Consensus 103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~ 141 (329)
T 3sb4_A 103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP 141 (329)
T ss_dssp CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECT
T ss_pred CcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccch
Confidence 99999987 477775 457889999999999998776654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=6.6e-08 Score=94.30 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=82.6
Q ss_pred ccceEEEeecCCCccccC-----CCCC-CCCcceeeeeecccccccc-hhHHhcCCCccEEEccCCCCcccc-----ccc
Q 012641 198 NEAVRVSLWRSPSIDSLS-----PTPP-CCPRLLTLLVRYTMIKEFE-NKFFQSMHALRVLDSSQNAKLSKL-----HVG 265 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~i~~l-----P~~ 265 (459)
+.++.+.+.++ .+.... ..+. ..++|++|++++|.+.... ..+...+++|+.|+|++| .++.. ...
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 56888888888 665421 1111 3368888888888664322 222445678888888888 77543 122
Q ss_pred c-cCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCc
Q 012641 266 E-GELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 344 (459)
Q Consensus 266 i-~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 344 (459)
+ ....+|++|++++|.+.... . ..++.. +..+++|++|++++|.+... ........+...++|+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~--~----~~l~~~-L~~~~~L~~L~Ls~N~l~~~--------g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAG--V----AVLMEG-LAGNTSVTHLSLLHTGLGDE--------GLELLAAQLDRNRQLQ 214 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHH--H----HHHHHH-HHTCSSCCEEECTTSSCHHH--------HHHHHHHHGGGCSCCC
T ss_pred HHhcCCccceeeCCCCCCChHH--H----HHHHHH-HhcCCCcCEEeCCCCCCCcH--------HHHHHHHHHhcCCCcC
Confidence 2 24577888888888776421 1 112222 45677888888888876210 0011245566677788
Q ss_pred eeEEEEeC
Q 012641 345 EISVIILT 352 (459)
Q Consensus 345 ~L~l~~~~ 352 (459)
.|+++.+.
T Consensus 215 ~L~Ls~N~ 222 (372)
T 3un9_A 215 ELNVAYNG 222 (372)
T ss_dssp EEECCSSC
T ss_pred eEECCCCC
Confidence 88776543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=1e-07 Score=92.96 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=38.4
Q ss_pred cceEEEeecCCCccccC-CCC-CCCCcceeeeeecccccccchhHH-----hcCCCccEEEccCCCCccc-----ccccc
Q 012641 199 EAVRVSLWRSPSIDSLS-PTP-PCCPRLLTLLVRYTMIKEFENKFF-----QSMHALRVLDSSQNAKLSK-----LHVGE 266 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~Lr~L~L~~~~~i~~-----lP~~i 266 (459)
.++.|.+.+| .++... ..+ ..+++|+.|++++|.+.......+ .....|++|+|++| .++. ++..+
T Consensus 102 ~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 102 ALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp CEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 4555555555 443210 111 123455556665554433222222 12355566666655 4442 33334
Q ss_pred cCCCCCCEEEcCCCCCc
Q 012641 267 GELIDLQYLNLSNTNIC 283 (459)
Q Consensus 267 ~~L~~L~~L~l~~~~l~ 283 (459)
...++|++|+|++|.+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HTCSSCCEEECTTSSCH
T ss_pred hcCCCcCEEeCCCCCCC
Confidence 45555666666655544
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.05 E-value=4.6e-05 Score=74.86 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=44.3
Q ss_pred cceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCC
Q 012641 223 RLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLS 302 (459)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~ 302 (459)
+|+.+.+.. .+..++...|.++.+|+.+++..| .+..+|...-...+|+.+.+..+ ++.+ +..++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I-----------~~~aF~ 223 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEI-----------GSQAFL 223 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEE-----------CTTTTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hhee-----------hhhHhh
Confidence 466655543 455555555666666666666666 66666544433456666666532 4433 334466
Q ss_pred CCCCCCEeeecC
Q 012641 303 SLLSLRVFSWVP 314 (459)
Q Consensus 303 ~L~~L~~L~l~~ 314 (459)
++.+|+.+.+..
T Consensus 224 ~~~~L~~l~l~~ 235 (401)
T 4fdw_A 224 KTSQLKTIEIPE 235 (401)
T ss_dssp TCTTCCCEECCT
T ss_pred CCCCCCEEecCC
Confidence 666666666654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=2.3e-06 Score=82.78 Aligned_cols=104 Identities=10% Similarity=0.007 Sum_probs=58.7
Q ss_pred ccceEEEeecCCCcc--c-------cCCCCCCCCcceeeeeeccccc---------ccchhHHhcCCCccEEEccCCCCc
Q 012641 198 NEAVRVSLWRSPSID--S-------LSPTPPCCPRLLTLLVRYTMIK---------EFENKFFQSMHALRVLDSSQNAKL 259 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~--~-------~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~Lr~L~L~~~~~i 259 (459)
..++.|.+... ... . +......+++|+.|.+...... .-...++..+++|+.|+++++ .-
T Consensus 107 ~~v~~L~lg~~-~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~-~~ 184 (362)
T 2ra8_A 107 PSLKQITIGXW-GYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT-NN 184 (362)
T ss_dssp GGCSEEEECCC-CSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC-BT
T ss_pred hhcceEEEccc-ccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC-CC
Confidence 45677777654 222 0 1122345678888877544211 012244677788888888877 32
Q ss_pred ccccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecC
Q 012641 260 SKLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVP 314 (459)
Q Consensus 260 ~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~ 314 (459)
..+|. +. +.+|++|++..|.+.. ..+.. + . ..++++|++|+++.
T Consensus 185 l~l~~-~~-~~~L~~L~L~~~~l~~--~~l~~----l--~-~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 185 LSIGK-KP-RPNLKSLEIISGGLPD--SVVED----I--L-GSDLPNLEKLVLYV 228 (362)
T ss_dssp CBCCS-CB-CTTCSEEEEECSBCCH--HHHHH----H--H-HSBCTTCCEEEEEC
T ss_pred ceecc-cc-CCCCcEEEEecCCCCh--HHHHH----H--H-HccCCCCcEEEEec
Confidence 24554 43 7788888888776531 11111 0 0 23677888888753
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.96 E-value=5.8e-05 Score=74.11 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=62.0
Q ss_pred cceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEEE
Q 012641 199 EAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYLN 276 (459)
Q Consensus 199 ~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L~ 276 (459)
.++.+.+.. .+..+. ..+..|++|+.+.+..|.+..++...|. ...|+.+.+..+ +..++ ..+..+.+|+.++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence 567777764 466665 5678899999999998888889888776 589999998844 77774 4567888999999
Q ss_pred cCCCCCcccC
Q 012641 277 LSNTNICELP 286 (459)
Q Consensus 277 l~~~~l~~lp 286 (459)
+..+ ++.++
T Consensus 233 l~~~-l~~I~ 241 (401)
T 4fdw_A 233 IPEN-VSTIG 241 (401)
T ss_dssp CCTT-CCEEC
T ss_pred cCCC-ccCcc
Confidence 8764 44444
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=1.2e-05 Score=68.93 Aligned_cols=92 Identities=17% Similarity=0.434 Sum_probs=59.1
Q ss_pred CCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChhhhhhhhcchhHHhhhhhhhccCCCCCCccc
Q 012641 305 LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLDSLNKLKSSSKLQSCVRRQVMGLPELSSLID 384 (459)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~l~~~L~~L~l~~~~l~~l~~ 384 (459)
-+|++|++++|.+ +......+..+++|+.|+++.+. .+.+ ..++.+.- +
T Consensus 61 ~~L~~LDLs~~~I------------td~GL~~L~~~~~L~~L~L~~C~--~ItD--------~gL~~L~~-------~-- 109 (176)
T 3e4g_A 61 YKIQAIDATDSCI------------MSIGFDHMEGLQYVEKIRLCKCH--YIED--------GCLERLSQ-------L-- 109 (176)
T ss_dssp CCEEEEEEESCCC------------CGGGGGGGTTCSCCCEEEEESCT--TCCH--------HHHHHHHT-------C--
T ss_pred ceEeEEeCcCCCc------------cHHHHHHhcCCCCCCEEEeCCCC--ccCH--------HHHHHHHh-------c--
Confidence 4688888888876 45566777888888888887432 1100 00111100 0
Q ss_pred cCccccCCccCcccccCccEEEEecC-CCCC--CcccccCCCcceeecccCcchhhh
Q 012641 385 ISSSSLTTMMKGHFSQNLQDLSIINC-SIKD--LTCILYIPRLRFLFAKDCPSLEEI 438 (459)
Q Consensus 385 ~~l~~~~~~i~~~~l~~L~~L~L~~~-~l~~--lp~l~~l~~L~~L~l~~c~~l~~i 438 (459)
....++|++|+|++| ++++ +..+..+++|++|+|++|+++++.
T Consensus 110 -----------~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 110 -----------ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -----------HHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred -----------ccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 001347888888888 6776 335677888999999998888764
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=2.5e-05 Score=67.97 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=81.5
Q ss_pred CCCCCcceeeeeecc-cccc-----cchhHHhcCCCccEEEccCCCCccc-----ccccccCCCCCCEEEcCCCCCcccC
Q 012641 218 PPCCPRLLTLLVRYT-MIKE-----FENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICELP 286 (459)
Q Consensus 218 ~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~lp 286 (459)
+...+.|++|++++| .+.. +.. .+...+.|++|+|++| .+.. +...+...++|++|+|++|.|..-
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~- 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS- 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH-
Confidence 355788999999988 6643 322 2667789999999999 7763 445566678899999999988742
Q ss_pred HHHHHhhhhCCCCcCCCCCCCCEeee--cCCCCCCcCCCCCCCCccccchhhhhccccCceeEEEEeChh
Q 012641 287 IGIKKNLKAIPAGMLSSLLSLRVFSW--VPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTLD 354 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 354 (459)
+... +... +...++|++|++ .+|.+.. .........+...++|+.|++..+...
T Consensus 109 -g~~~----l~~~-L~~n~~L~~L~L~~~~N~i~~--------~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 -GILA----LVEA-LQSNTSLIELRIDNQSQPLGN--------NVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -HHHH----HHHG-GGGCSSCCEEECCCCSSCCCH--------HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -HHHH----HHHH-HHhCCCceEEEecCCCCCCCH--------HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2211 2222 566788999999 7787621 000113455666789999999766544
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=9.7e-06 Score=74.62 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCCccee--eeeecccccccc---hhHHhcCCCccEEEccCCCCccccc---ccccCCCCCCEEEcCCCCCcccCHHHHH
Q 012641 220 CCPRLLT--LLVRYTMIKEFE---NKFFQSMHALRVLDSSQNAKLSKLH---VGEGELIDLQYLNLSNTNICELPIGIKK 291 (459)
Q Consensus 220 ~~~~L~~--L~l~~~~~~~~~---~~~~~~l~~Lr~L~L~~~~~i~~lP---~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 291 (459)
..+.|.. +++..|....++ ......+++|+.|+|++| .+..++ ..++.+++|++|+|++|.++.+.. +..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhh
Confidence 3344554 445555333332 222357899999999999 887654 566789999999999999887632 211
Q ss_pred hhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeE
Q 012641 292 NLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 347 (459)
Q Consensus 292 Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 347 (459)
+..+ +|++|++.+|.+.. .++........-+..+++|+.|+
T Consensus 217 ---------l~~l-~L~~L~L~~Npl~~-----~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 ---------IKGL-KLEELWLDGNSLCD-----TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ---------GTTS-CCSEEECTTSTTGG-----GCSSHHHHHHHHHHHCTTCCEES
T ss_pred ---------cccC-CcceEEccCCcCcc-----ccCcchhHHHHHHHHCcccCeEC
Confidence 4444 89999999998631 00000011123456677777764
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=6.4e-05 Score=64.27 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=66.0
Q ss_pred ccCCCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccc-cccccCC----CCCCEEEcCCC-CCcccC
Q 012641 213 SLSPTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGEL----IDLQYLNLSNT-NICELP 286 (459)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L----~~L~~L~l~~~-~l~~lp 286 (459)
.+|.....-.+|+.|++++|.+....-..+.++++|+.|+|++|..++.- -..++.+ ++|++|++++| .++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-- 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-- 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--
Confidence 34333334457999999999766554445788999999999999656532 1235554 36999999998 4664
Q ss_pred HHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 287 IGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 287 ~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
.++.. +.++++|++|++++|..
T Consensus 130 ~Gl~~---------L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 130 KGIIA---------LHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHHH---------GGGCTTCCEEEEESCTT
T ss_pred HHHHH---------HhcCCCCCEEECCCCCC
Confidence 23333 66789999999999864
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.57 E-value=0.00015 Score=70.07 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=73.9
Q ss_pred cccceEEEeecCCCccccCCCCCCCCcceeeeeecccccccchhHHh--cCCCccEEEccCCC-------Ccccccccc-
Q 012641 197 WNEAVRVSLWRSPSIDSLSPTPPCCPRLLTLLVRYTMIKEFENKFFQ--SMHALRVLDSSQNA-------KLSKLHVGE- 266 (459)
Q Consensus 197 ~~~~r~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~Lr~L~L~~~~-------~i~~lP~~i- 266 (459)
.+.++.|.+.++ .--.+++ + .+++|+.|.+..|.+..-.-..+. .+++|+.|+|+.+. .+..+...+
T Consensus 171 ~P~L~~L~L~g~-~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGT-NNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECC-BTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCC-CCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 357888888776 2223322 2 377888888877654322222233 67888888875310 122222222
Q ss_pred -cCCCCCCEEEcCCCCCcc-cCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCcc--ccchhhhhcccc
Q 012641 267 -GELIDLQYLNLSNTNICE-LPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT--VLLLEELESLKH 342 (459)
Q Consensus 267 -~~L~~L~~L~l~~~~l~~-lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~ 342 (459)
+.+++|++|++++|.+.. .+..+.. ...+++|++|+++.|.+.. . ......+.++++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~---------a~~~~~L~~LdLs~n~L~d----------~G~~~L~~~L~~l~~ 308 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLE---------SDILPQLETMDISAGVLTD----------EGARLLLDHVDKIKH 308 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHH---------CSSGGGCSEEECCSSCCBH----------HHHHHHHTTHHHHTT
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHh---------CccCCCCCEEECCCCCCCh----------HHHHHHHhhcccCCc
Confidence 346788888888776652 1111111 2346788888887776521 1 112344566778
Q ss_pred CceeEEEEe
Q 012641 343 LQEISVIIL 351 (459)
Q Consensus 343 L~~L~l~~~ 351 (459)
|+.|+++.+
T Consensus 309 L~~L~L~~n 317 (362)
T 2ra8_A 309 LKFINMKYN 317 (362)
T ss_dssp CSEEECCSB
T ss_pred ceEEECCCC
Confidence 888877543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=6e-05 Score=69.33 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCCcceeeeeecccccccch--hHHhcCCCccEEEccCCCCcccccccccCCC--CCCEEEcCCCCCc-ccCHHHHHhhh
Q 012641 220 CCPRLLTLLVRYTMIKEFEN--KFFQSMHALRVLDSSQNAKLSKLHVGEGELI--DLQYLNLSNTNIC-ELPIGIKKNLK 294 (459)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~--~L~~L~l~~~~l~-~lp~~i~~Ll~ 294 (459)
.+++|++|++++|.+..++. ..+..+++|++|+|++| .+..+. .++.+. +|++|++++|++. .+|..-..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y--- 242 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTY--- 242 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHH---
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhH---
Confidence 57899999999998876653 44789999999999999 888773 355555 9999999999986 35521000
Q ss_pred hCCCCcCCCCCCCCEeeec
Q 012641 295 AIPAGMLSSLLSLRVFSWV 313 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~ 313 (459)
. ..++..+++|+.|+..
T Consensus 243 -~-~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 -I-SAIRERFPKLLRLDGH 259 (267)
T ss_dssp -H-HHHHHHCTTCCEESSC
T ss_pred -H-HHHHHHCcccCeECCc
Confidence 0 0114556677777754
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.80 E-value=0.0004 Score=60.22 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=63.7
Q ss_pred hHHhcCCCccEEEccCCCCcc-----cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecC
Q 012641 240 KFFQSMHALRVLDSSQNAKLS-----KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVP 314 (459)
Q Consensus 240 ~~~~~l~~Lr~L~L~~~~~i~-----~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~ 314 (459)
..+...+.|++|+|++|..+. .+...+...++|++|+|++|.+.. .+...+ ... +...++|++|++++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~--~g~~~l----~~~-L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND--PVAFAL----AEM-LKVNNTLKSLNVES 102 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH--HHHHHH----HHH-HHHCSSCCEEECCS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh--HHHHHH----HHH-HHhCCCcCEEECcC
Confidence 347778999999999873443 355667778899999999998863 122111 111 34457899999999
Q ss_pred CCCCCcCCCCCCCCccccchhhhhccccCceeEE
Q 012641 315 TRYAGFNYGSSVPGVTVLLLEELESLKHLQEISV 348 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 348 (459)
|.+.. .........+...++|+.|++
T Consensus 103 N~i~~--------~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 103 NFISG--------SGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SCCCH--------HHHHHHHHGGGGCSSCCEEEC
T ss_pred CcCCH--------HHHHHHHHHHHhCCCceEEEe
Confidence 98732 001123556677788999998
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.78 E-value=0.011 Score=47.65 Aligned_cols=54 Identities=26% Similarity=0.397 Sum_probs=37.0
Q ss_pred EEEccCCCCcc--cccccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCC
Q 012641 250 VLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRY 317 (459)
Q Consensus 250 ~L~L~~~~~i~--~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~ 317 (459)
+++.+++ .++ .+|..+. .+|++|+|++|.|+.||.+ ++..+.+|+.|++.+|..
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~-----------~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPG-----------LLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTT-----------TGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChh-----------hhhhccccCEEEecCCCe
Confidence 5667777 776 7775432 3677888888877776643 266777788888877764
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.59 E-value=0.11 Score=50.39 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=66.5
Q ss_pred CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhh
Q 012641 216 PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLK 294 (459)
Q Consensus 216 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~ 294 (459)
..+..|.+|+.+.+..+ ...+....|.++..|+.+.+.. .+..++. .+..+.+|+.+++..+ ++.+.
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-------- 326 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQIL-------- 326 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEEC--------
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEeh--------
Confidence 45567777887777543 3456666677788888887753 4666653 4566777888777653 44433
Q ss_pred hCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 295 AIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 295 ~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
..++.++.+|+.+.+..+ . .......+.++++|+.+.+.
T Consensus 327 ---~~aF~~C~~L~~i~ip~s-v------------~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 327 ---DDAFAGCEQLERIAIPSS-V------------TKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp ---TTTTTTCTTCCEEEECTT-C------------CBCCGGGGTTCTTCCEEEES
T ss_pred ---HhHhhCCCCCCEEEECcc-c------------CEEhHhHhhCCCCCCEEEEC
Confidence 334777778887777533 2 22234456677777777664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.38 E-value=0.06 Score=43.33 Aligned_cols=54 Identities=15% Similarity=0.017 Sum_probs=33.8
Q ss_pred eeeeeccccc--ccchhHHhcCCCccEEEccCCCCccccccc-ccCCCCCCEEEcCCCCCc
Q 012641 226 TLLVRYTMIK--EFENKFFQSMHALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSNTNIC 283 (459)
Q Consensus 226 ~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~-i~~L~~L~~L~l~~~~l~ 283 (459)
+++.+++.+. .+|.. --.+|++|+|++| .|+.+|.. +..+.+|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 3444455555 55543 1235777777777 77777643 466777777888777653
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.64 E-value=0.33 Score=46.48 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=36.8
Q ss_pred CCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccc-cccCCCCCCEEEcCCCCCcccCHHHHHhhhhCC
Q 012641 219 PCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIGIKKNLKAIP 297 (459)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp 297 (459)
..+..|+.+.+..+ +..+....|.++..|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~---------- 303 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEP---------- 303 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECT----------
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehh----------
Confidence 34444554444332 33444444455555555554322 333332 23445555555555544444332
Q ss_pred CCcCCCCCCCCEeeec
Q 012641 298 AGMLSSLLSLRVFSWV 313 (459)
Q Consensus 298 ~~~i~~L~~L~~L~l~ 313 (459)
.++.++.+|+.+.+.
T Consensus 304 -~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 304 -RVFMDCVKLSSVTLP 318 (379)
T ss_dssp -TTTTTCTTCCEEECC
T ss_pred -hhhcCCCCCCEEEcC
Confidence 225555555555553
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.99 E-value=0.17 Score=48.94 Aligned_cols=120 Identities=10% Similarity=0.082 Sum_probs=75.7
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L 275 (459)
..++.+.+..+ ...+. ..+..+..++.+..... .++...|..+..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 253 ~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 253 TDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp SSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS---EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEE
T ss_pred ccceeEEcCCC--cceeeccccccccccceeccCce---eeccccccccccccccccccc--cceechhhhcCCCCCCEE
Confidence 34455555443 22222 45566777777766543 355555778888888888654 66664 446677888888
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
++..+ ++.++ ..++.++++|+.+.+..+ . .......+.++.+|+.+.+.
T Consensus 326 ~lp~~-v~~I~-----------~~aF~~c~~L~~i~lp~~-l------------~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 326 DLPYL-VEEIG-----------KRSFRGCTSLSNINFPLS-L------------RKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCCTT-CCEEC-----------TTTTTTCTTCCEECCCTT-C------------CEECTTTBTTCTTCCEEEEE
T ss_pred EeCCc-ccEEh-----------HHhccCCCCCCEEEECcc-c------------cEehHHHhhCCCCCCEEEEC
Confidence 88643 54443 344888888888888654 2 22234566778888888775
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.93 E-value=0.42 Score=45.73 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=75.2
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCccccc-ccccCCCCCCEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLH-VGEGELIDLQYL 275 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~L 275 (459)
..++.+.+..+ +..+. ..+..+.+|+.+.+.. .+..++...|.++.+|+.+.+.++ .++.++ ..+.++.+|+.+
T Consensus 240 ~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 240 KALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEE
T ss_pred ccceEEEcCCC--ccEeCccccceeehhccccccc-cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEE
Confidence 34555555443 44443 4566788999998864 467788888999999999999988 888885 557788999999
Q ss_pred EcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecC
Q 012641 276 NLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVP 314 (459)
Q Consensus 276 ~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~ 314 (459)
.+..+ ++.++ ..++.++++|+.+.+..
T Consensus 316 ~lp~~-l~~I~-----------~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 316 TLPTA-LKTIQ-----------VYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTT-CCEEC-----------TTTTTTCTTCCCCCCCT
T ss_pred EcCcc-ccEEH-----------HHHhhCCCCCCEEEECC
Confidence 99754 55544 34488999999888854
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.84 E-value=0.66 Score=44.74 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=18.0
Q ss_pred ccchhHHhcCCCccEEEccCCCCcccc-cccccCCCCCCEEEcC
Q 012641 236 EFENKFFQSMHALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLS 278 (459)
Q Consensus 236 ~~~~~~~~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~ 278 (459)
.+....|.++..|+.+.+..+ +..+ ...+.+...|+.+.+.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred EcccceeeecccccEEecccc--cceecCcccccccccccccCC
Confidence 333334555555555555433 2222 1223444555555553
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.32 E-value=0.9 Score=43.74 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=77.4
Q ss_pred ccceEEEeecCCCccccC-CCCCCCCcceeeeeecccccccchhHHhcCCCccEEEccCCCCcccccccccCCCCCCEEE
Q 012641 198 NEAVRVSLWRSPSIDSLS-PTPPCCPRLLTLLVRYTMIKEFENKFFQSMHALRVLDSSQNAKLSKLHVGEGELIDLQYLN 276 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~ 276 (459)
..++.+.+... +..+. ..+..+..++.+.+..+ ...++...|..+..++......+ .+. ...+....+|+.+.
T Consensus 230 ~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~-~i~--~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 230 TGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV-IVP--EKTFYGCSSLTEVK 303 (394)
T ss_dssp CCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS-EEC--TTTTTTCTTCCEEE
T ss_pred CCCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCce-eec--cccccccccccccc
Confidence 34556665443 34443 45567888888888765 33455555888888888877665 322 13456678888888
Q ss_pred cCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccccchhhhhccccCceeEEE
Q 012641 277 LSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVI 349 (459)
Q Consensus 277 l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 349 (459)
+..+ ++.++ ..++.++.+|+.+.+..+ . .......+.++++|+.+.+.
T Consensus 304 l~~~-i~~I~-----------~~aF~~c~~L~~i~lp~~-v------------~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 304 LLDS-VKFIG-----------EEAFESCTSLVSIDLPYL-V------------EEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp ECTT-CCEEC-----------TTTTTTCTTCCEECCCTT-C------------CEECTTTTTTCTTCCEECCC
T ss_pred cccc-cceec-----------hhhhcCCCCCCEEEeCCc-c------------cEEhHHhccCCCCCCEEEEC
Confidence 8754 54443 344888899999988543 2 22234566778888877763
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.32 E-value=0.5 Score=40.77 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=70.6
Q ss_pred CCcceeeeeecc-ccc-----ccchhHHhcCCCccEEEccCCCCccc-----ccccccCCCCCCEEEcCCCCCcccCHHH
Q 012641 221 CPRLLTLLVRYT-MIK-----EFENKFFQSMHALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICELPIGI 289 (459)
Q Consensus 221 ~~~L~~L~l~~~-~~~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~-----lP~~i~~L~~L~~L~l~~~~l~~lp~~i 289 (459)
-+.|+.|+++++ .+. .+.. .+..-..|+.|+|++| .+.. +-..+..=+.|++|+|++|.|. +.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig--~~Ga 115 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT--PELL 115 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC--HHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCC--HHHH
Confidence 355677777664 433 2222 2566789999999999 7763 2333444568999999999887 3344
Q ss_pred HHhhhhCCCCcCCCCCCCCEeeecCCCCCCcCCCCCCCCccc----cchhhhhccccCceeEEEEeCh
Q 012641 290 KKNLKAIPAGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTV----LLLEELESLKHLQEISVIILTL 353 (459)
Q Consensus 290 ~~Ll~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~~L~l~~~~~ 353 (459)
..+.+. +..-+.|++|+++++....+ +. .+.+.|..=+.|+.|++..+..
T Consensus 116 ~ala~a-----L~~N~tL~~L~L~n~~~~~i---------g~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRS-----TLVTQSIVEFKADNQRQSVL---------GNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHH-----TTTTCCCSEEECCCCSSCCC---------CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHH-----HhhCCceeEEECCCCcCcCc---------CHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 333333 33445799999976532000 21 2445666677899888875443
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.99 E-value=7.1 Score=36.22 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHH-HHHHHHhcCCCCCCCCcccchhhhhhhhcCC---CchhHHHHhhh
Q 012641 19 ELAETVADMCGGLPLALVTIGSAMASRRDPDNWR-YAIEELQRYPSGFEGMGTRVFPLLKFSYDRL---TSETHKTCFLY 94 (459)
Q Consensus 19 ~i~~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~-~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~lk~cfl~ 94 (459)
+...+|++.|+|.|+++..++..+....+...+- ...+. +...+.-.+..+ +. ..+..+..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~~~~-~~~~~l~~ 290 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------------AKGLIMGELEELRRRSP-RYVDILRA 290 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH--------------HHHHHHHHHHHHHhCCh-hHHHHHHH
Confidence 4678899999999999999987654312222221 11111 111111112222 56 58899888
Q ss_pred hcccCCCCccCHHHHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEee-hHHHHHH
Q 012641 95 CSLFPRSQIIMKDELIELWIGEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKM-HDILRDM 166 (459)
Q Consensus 95 ~~~fp~~~~i~~~~li~~Wia~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~-hdli~~l 166 (459)
+|. + .++...+.....+.. - .. + ......+++.|.+.+++... ...+++ |.++++.
T Consensus 291 la~---g-~~~~~~l~~~~~~~~-~-~~-~----~~~~~~~l~~L~~~gli~~~-----~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 291 IAL---G-YNRWSLIRDYLAVKG-T-KI-P----EPRLYALLENLKKMNWIVEE-----DNTYKIADPVVATV 347 (350)
T ss_dssp HHT---T-CCSHHHHHHHHHHTT-C-CC-C----HHHHHHHHHHHHHTTSEEEE-----TTEEEESSHHHHHH
T ss_pred HHh---C-CCCHHHHHHHHHHHh-C-CC-C----HHHHHHHHHHHHhCCCEEec-----CCEEEEecHHHHHH
Confidence 887 2 245455554443211 0 11 1 23356789999999999865 235665 5565543
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=76.26 E-value=7.4 Score=36.16 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=65.1
Q ss_pred HHHHHHcCCchhHHHHHHHHHcCCCChhhHHH-HHHHHhcCCCCCCCCcccchhhhh-hhhc--CCCchhHHHHhhhhcc
Q 012641 22 ETVADMCGGLPLALVTIGSAMASRRDPDNWRY-AIEELQRYPSGFEGMGTRVFPLLK-FSYD--RLTSETHKTCFLYCSL 97 (459)
Q Consensus 22 ~~iv~kc~GlPLai~~ig~~L~~~~~~~~W~~-~~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~lk~cfl~~~~ 97 (459)
.+|++.|+|.|+++..++..+....+...|-. ..+.... .+...+. +.++ .|+. ..+..+..+|+
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~ 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHc
Confidence 78999999999999999988754233333321 1111100 0111111 1111 5777 58999999987
Q ss_pred cCCCCccCHHHHHHHHH-HcCCCcCCCchHHHHHHHHHHHHHHHHccccceecccCccCcEee-hHHHHHH
Q 012641 98 FPRSQIIMKDELIELWI-GEGLLRDSHNIAAAKREGNLILESLKLACLLEEVEVNNSEDFFKM-HDILRDM 166 (459)
Q Consensus 98 fp~~~~i~~~~li~~Wi-a~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~~~~~~~~~~~-hdli~~l 166 (459)
+. +...+..... ..|. .. + ......+++.|+++++|.... ..|++ |+++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~--~~-~----~~~~~~~L~~L~~~gli~~~~-----~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI--EI-S----DSEIYNYLTQLTKHSWIIKEG-----EKYCPSEPLISLA 355 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS--CC-C----HHHHHHHHHHHHHTTSEEESS-----SCEEESSHHHHHH
T ss_pred ---CC--CHHHHHHHHHHhcCC--CC-C----HHHHHHHHHHHHhCCCEEecC-----CEEEecCHHHHHh
Confidence 22 4444332221 1231 00 1 223567899999999997652 34664 6676654
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.17 E-value=5 Score=34.44 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=67.9
Q ss_pred ccceEEEeecCCCccc-----cCCCCCCCCcceeeeeecccccccc----hhHHhcCCCccEEEccCCCCccc-----cc
Q 012641 198 NEAVRVSLWRSPSIDS-----LSPTPPCCPRLLTLLVRYTMIKEFE----NKFFQSMHALRVLDSSQNAKLSK-----LH 263 (459)
Q Consensus 198 ~~~r~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~~i~~-----lP 263 (459)
..++.|.+.++..++. +...+..-..|+.|++++|.+.... .+.+..-+.|+.|+|++| .|.. +-
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence 4566777765213332 1133345678899999988664221 223667789999999999 7763 33
Q ss_pred ccccCCCCCCEEEcCCCCCcccCHHHHHhhhhCCCCcCCCCCCCCEeeecCCC
Q 012641 264 VGEGELIDLQYLNLSNTNICELPIGIKKNLKAIPAGMLSSLLSLRVFSWVPTR 316 (459)
Q Consensus 264 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~Ll~~lp~~~i~~L~~L~~L~l~~~~ 316 (459)
..+..=+.|++|+|+++....+-.....-+. .. +..-+.|+.|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia---~a-L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMM---MA-IEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHH---HH-HHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHH---HH-HHhCCCcCeEeccCCC
Confidence 4455566799999987633233222111000 01 3344678888887654
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=75.57 E-value=13 Score=35.37 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcC------CchhHHHHHHHHH---c--CCC---ChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhhcCC
Q 012641 18 RELAETVADMCG------GLPLALVTIGSAM---A--SRR---DPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSYDRL 83 (459)
Q Consensus 18 ~~i~~~iv~kc~------GlPLai~~ig~~L---~--~~~---~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L 83 (459)
.+..+.|++.|+ |.|..+..+.... + ... +.+.+..+.. .... ...+.-.++.|
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~---~~~~---------~~~~~~~l~~l 306 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS---ENEA---------ASIQTHELEAL 306 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH---HC---------------CCSSSSS
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH---HHhc---------cchHHHHHHcC
Confidence 356778899999 9997665554322 1 111 2233333332 2110 12345567889
Q ss_pred CchhHHHHhhhhcccC--CCCccCHHHHHHHHH--H-c--CCCcCCCchHHHHHHHHHHHHHHHHccccceec
Q 012641 84 TSETHKTCFLYCSLFP--RSQIIMKDELIELWI--G-E--GLLRDSHNIAAAKREGNLILESLKLACLLEEVE 149 (459)
Q Consensus 84 ~~~~lk~cfl~~~~fp--~~~~i~~~~li~~Wi--a-~--g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~ 149 (459)
|. +.+.++..++.+. .+..++..++...+. + . |. ... + ......+++.|.+.+++....
T Consensus 307 ~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 307 SI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPR-G----YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCC-C----HHHHHHHHHHHHHTTSEEEEC
T ss_pred CH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCC-C----HHHHHHHHHHHHhCCCEEeec
Confidence 98 6899988888764 334566666655442 2 1 21 111 1 233557899999999997654
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=73.96 E-value=1.1 Score=41.53 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred HHHcCCCcCCCchHHHHHHHHHHHH-HHHHccccce
Q 012641 113 WIGEGLLRDSHNIAAAKREGNLILE-SLKLACLLEE 147 (459)
Q Consensus 113 Wia~g~v~~~~~~~~~e~~~~~~~~-~L~~r~li~~ 147 (459)
-+..|++...+.+..+.+.|..|+. ++++|+|||+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 4567777655445566677888886 7888888764
No 173
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=37.64 E-value=59 Score=24.44 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=42.7
Q ss_pred cCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCC-hhhHHHHHHHHhc
Q 012641 6 VTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRRD-PDNWRYAIEELQR 60 (459)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~~-~~~W~~~~~~l~~ 60 (459)
.|+.+..+.|..-..+-+..+...-.|+|+.++-+.-....+ .+.|..+++.+..
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkP 91 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRP 91 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhh
Confidence 467777889998888888889999999999998776655433 3449988887654
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=30.24 E-value=3.2e+02 Score=24.99 Aligned_cols=89 Identities=12% Similarity=-0.016 Sum_probs=49.5
Q ss_pred hhhhcCCCchhHHHHhhhhcccC---CCCccCHHHHHHHHHH----cCCCcCCCchHHHHHHHHHHHHHHHHccccceec
Q 012641 77 KFSYDRLTSETHKTCFLYCSLFP---RSQIIMKDELIELWIG----EGLLRDSHNIAAAKREGNLILESLKLACLLEEVE 149 (459)
Q Consensus 77 ~~sy~~L~~~~lk~cfl~~~~fp---~~~~i~~~~li~~Wia----~g~v~~~~~~~~~e~~~~~~~~~L~~r~li~~~~ 149 (459)
.-.+..|+. +.|.++..++.+. .+..+...++...+.. .|...-. ......++++|.++++|....
T Consensus 280 ~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 280 EEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRV------HSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCC------HHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHhCCCeEEee
Confidence 344667887 5777777677554 2324566666554433 2321111 233567899999999998754
Q ss_pred c---cC---ccCcEe----ehHHHHHHHHHHHh
Q 012641 150 V---NN---SEDFFK----MHDILRDMALWIAS 172 (459)
Q Consensus 150 ~---~~---~~~~~~----~hdli~~l~~~~~~ 172 (459)
. .| ....++ .|+++..+...+..
T Consensus 353 ~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 353 NKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp C---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred eccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 3 12 121222 45666666655544
No 175
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=25.16 E-value=1.8e+02 Score=20.50 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=33.1
Q ss_pred CchhHHHHHHHHHcCCCChhhHHHHHHHHhcCCCCCCCCcccchhhhhhhhcCCCchhHHHHhh
Q 012641 30 GLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFEGMGTRVFPLLKFSYDRLTSETHKTCFL 93 (459)
Q Consensus 30 GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl 93 (459)
+.|--+.+++..+......++++.+...+.......-... ++..+++..-..++.+.++..|-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~-El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 10 GSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAA-ELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp CSSCCTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBCHH-HHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCCHH-HHHHHHHHhCCCCCHHHHHHHHH
Confidence 3444455667777665677888888777766544322222 34444443333344323444443
No 176
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.78 E-value=1.3e+02 Score=23.98 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=42.2
Q ss_pred cCcccccCCccHHHHHHHHHHHcCCchhHHHHHHHHHcCCC-ChhhHHHHHHHHhc
Q 012641 6 VTDDVLNSHPEIRELAETVADMCGGLPLALVTIGSAMASRR-DPDNWRYAIEELQR 60 (459)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~iv~kc~GlPLai~~ig~~L~~~~-~~~~W~~~~~~l~~ 60 (459)
.|+.+..+.|..-.-+-+..+...-.|+|+.++=+.-.... ..+.|..+++++..
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkP 134 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRP 134 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhh
Confidence 46677788888888888888899999999999876654443 34459998887654
No 177
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=21.54 E-value=38 Score=17.88 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.2
Q ss_pred HcCCchhHHHHHHHHHcC
Q 012641 27 MCGGLPLALVTIGSAMAS 44 (459)
Q Consensus 27 kc~GlPLai~~ig~~L~~ 44 (459)
|-.-+|||..++|+.+..
T Consensus 7 krrklplavav~agv~~a 24 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCTHHHHHHHHTTCC
T ss_pred ccccCchHHHHHHHHhHh
Confidence 344699999999998765
Done!