Query 012643
Match_columns 459
No_of_seqs 137 out of 802
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 7.9E-24 1.7E-28 171.0 9.4 78 367-457 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 2.3E-18 5E-23 138.7 9.0 76 368-456 2-81 (82)
3 KOG1616 Protein involved in Sn 99.6 1.6E-15 3.4E-20 149.5 7.9 83 367-459 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.2 8.8E-11 1.9E-15 96.0 9.0 76 368-456 6-84 (85)
5 cd02688 E_set E or "early" set 98.8 1.5E-08 3.2E-13 77.9 7.9 70 368-449 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.3 1.4E-06 3E-11 74.1 7.3 68 368-447 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.3 5.8E-07 1.3E-11 71.5 3.9 58 368-436 11-73 (85)
8 cd05808 CBM20_alpha_amylase Al 97.7 0.00017 3.6E-09 59.0 8.3 67 369-447 2-82 (95)
9 cd02860 Pullulanase_N_term Pul 97.6 0.00024 5.3E-09 59.0 7.2 68 369-450 9-88 (100)
10 PF00686 CBM_20: Starch bindin 97.5 0.00037 8E-09 57.7 6.6 58 368-433 2-68 (96)
11 cd02855 Glycogen_branching_enz 97.4 0.00096 2.1E-08 54.7 8.7 77 369-456 22-105 (106)
12 COG0296 GlgB 1,4-alpha-glucan 97.4 0.00023 4.9E-09 78.0 6.3 66 366-443 34-107 (628)
13 cd02856 Glycogen_debranching_e 97.2 0.0012 2.5E-08 55.5 7.1 53 369-435 10-66 (103)
14 cd05814 CBM20_Prei4 Prei4, N-t 97.2 0.002 4.3E-08 55.9 8.8 55 369-433 2-66 (120)
15 cd05818 CBM20_water_dikinase P 97.1 0.003 6.5E-08 52.7 8.8 68 368-448 2-81 (92)
16 PRK12313 glycogen branching en 97.1 0.0019 4.1E-08 70.0 8.6 65 368-444 38-109 (633)
17 PLN02447 1,4-alpha-glucan-bran 97.0 0.0026 5.7E-08 71.2 9.6 103 309-443 74-190 (758)
18 PRK12568 glycogen branching en 97.0 0.0023 4.9E-08 71.4 9.0 68 366-446 136-211 (730)
19 cd05809 CBM20_beta_amylase Bet 97.0 0.0047 1E-07 52.0 8.6 73 367-448 2-89 (99)
20 cd05820 CBM20_novamyl Novamyl 96.9 0.0076 1.6E-07 51.2 9.6 69 368-448 3-90 (103)
21 cd02852 Isoamylase_N_term Isoa 96.8 0.0038 8.3E-08 53.4 6.7 61 369-440 8-75 (119)
22 PRK14705 glycogen branching en 96.8 0.0042 9.1E-08 72.7 8.8 66 366-443 636-709 (1224)
23 cd05811 CBM20_glucoamylase Glu 96.8 0.014 3.1E-07 49.0 9.8 74 367-448 6-93 (106)
24 PRK14706 glycogen branching en 96.7 0.0044 9.5E-08 68.0 8.0 66 368-446 38-111 (639)
25 cd05817 CBM20_DSP Dual-specifi 96.6 0.007 1.5E-07 51.0 7.0 44 378-433 13-62 (100)
26 PRK05402 glycogen branching en 96.5 0.0077 1.7E-07 66.6 8.6 64 368-442 131-201 (726)
27 cd05813 CBM20_genethonin_1 Gen 96.5 0.013 2.8E-07 48.6 7.5 53 369-433 2-62 (95)
28 cd05467 CBM20 The family 20 ca 96.4 0.013 2.9E-07 47.6 7.3 45 377-433 12-65 (96)
29 cd05816 CBM20_DPE2_repeat2 Dis 96.4 0.037 8E-07 46.5 10.1 67 370-448 2-85 (99)
30 cd05807 CBM20_CGTase CGTase, C 96.4 0.029 6.4E-07 47.2 9.4 74 367-448 2-90 (101)
31 TIGR02402 trehalose_TreZ malto 96.4 0.0073 1.6E-07 64.8 7.2 62 370-448 1-65 (542)
32 cd02853 MTHase_N_term Maltooli 96.3 0.018 3.8E-07 46.9 7.4 64 369-448 9-74 (85)
33 cd05810 CBM20_alpha_MTH Glucan 95.9 0.052 1.1E-06 45.9 8.3 68 369-448 2-87 (97)
34 TIGR01515 branching_enzym alph 95.6 0.035 7.7E-07 60.3 8.1 67 368-446 28-102 (613)
35 PRK05402 glycogen branching en 95.5 0.028 6E-07 62.3 6.9 62 369-443 29-95 (726)
36 PLN02316 synthase/transferase 95.4 0.1 2.2E-06 60.8 11.0 59 368-435 329-398 (1036)
37 PF03423 CBM_25: Carbohydrate 94.8 0.075 1.6E-06 44.4 5.7 61 369-437 3-74 (87)
38 cd05815 CBM20_DPE2_repeat1 Dis 94.4 0.17 3.6E-06 42.4 6.9 55 370-433 2-65 (101)
39 TIGR02104 pulA_typeI pullulana 93.7 0.19 4.2E-06 54.6 7.6 66 369-447 20-95 (605)
40 PF11806 DUF3327: Domain of un 92.9 0.64 1.4E-05 41.3 8.4 79 368-457 2-111 (122)
41 cd05806 CBM20_laforin Laforin 92.7 0.89 1.9E-05 40.3 9.0 56 373-433 10-74 (112)
42 PRK10439 enterobactin/ferric e 92.3 0.55 1.2E-05 49.1 8.3 83 365-458 36-161 (411)
43 PLN02316 synthase/transferase 92.2 0.86 1.9E-05 53.4 10.4 55 368-433 491-557 (1036)
44 PLN02950 4-alpha-glucanotransf 91.2 1.3 2.9E-05 51.1 10.5 71 366-448 151-237 (909)
45 TIGR02100 glgX_debranch glycog 89.9 0.75 1.6E-05 51.4 6.9 55 369-437 15-75 (688)
46 PRK03705 glycogen debranching 89.6 0.7 1.5E-05 51.4 6.4 55 369-437 20-78 (658)
47 PLN02950 4-alpha-glucanotransf 88.7 2.4 5.3E-05 49.1 10.0 67 368-443 9-90 (909)
48 PLN02960 alpha-amylase 87.5 1.8 3.9E-05 50.1 7.9 116 291-434 72-198 (897)
49 TIGR02102 pullulan_Gpos pullul 86.7 1.7 3.6E-05 51.4 7.3 63 370-444 329-406 (1111)
50 TIGR02103 pullul_strch alpha-1 83.3 3 6.5E-05 48.4 7.2 68 368-447 135-216 (898)
51 cd02857 CD_pullulan_degrading_ 82.3 7.2 0.00016 32.4 7.4 58 368-433 16-79 (116)
52 PRK14510 putative bifunctional 72.6 11 0.00023 45.3 7.7 56 368-437 23-84 (1221)
53 TIGR03503 conserved hypothetic 55.5 23 0.00049 37.7 5.6 42 382-436 152-195 (374)
54 PLN02877 alpha-amylase/limit d 52.6 32 0.0007 40.7 6.6 51 369-434 223-280 (970)
55 PLN03244 alpha-amylase; Provis 50.6 12 0.00027 43.4 2.9 60 369-434 132-201 (872)
56 KOG2264 Exostosin EXT1L [Signa 48.0 22 0.00048 40.3 4.2 52 304-355 116-167 (907)
57 PF02903 Alpha-amylase_N: Alph 47.9 48 0.001 28.6 5.5 67 369-443 24-100 (120)
58 COG3794 PetE Plastocyanin [Ene 46.9 54 0.0012 30.1 5.9 49 368-430 62-111 (128)
59 PF03370 CBM_21: Putative phos 46.2 62 0.0013 28.1 6.0 71 369-439 22-104 (113)
60 KOG0470 1,4-alpha-glucan branc 43.5 27 0.00059 40.2 4.1 41 370-421 115-157 (757)
61 PF00392 GntR: Bacterial regul 43.2 26 0.00057 27.0 2.9 31 62-92 3-34 (64)
62 KOG1263 Multicopper oxidases [ 40.5 44 0.00095 37.3 5.1 32 412-443 96-131 (563)
63 smart00345 HTH_GNTR helix_turn 38.5 41 0.00089 24.3 3.2 33 64-96 1-34 (60)
64 PF01357 Pollen_allerg_1: Poll 37.4 75 0.0016 26.4 4.9 58 368-440 14-77 (82)
65 PF07862 Nif11: Nitrogen fixat 33.7 29 0.00064 25.8 1.8 17 92-108 28-44 (49)
66 PF10281 Ish1: Putative stress 32.6 74 0.0016 22.9 3.6 30 66-102 7-36 (38)
67 COG1725 Predicted transcriptio 32.4 1.1E+02 0.0024 28.1 5.5 65 63-129 15-80 (125)
68 PF08022 FAD_binding_8: FAD-bi 31.9 15 0.00033 31.1 0.0 13 19-37 47-59 (105)
69 PF13473 Cupredoxin_1: Cupredo 29.5 1.1E+02 0.0023 25.6 4.7 16 414-429 74-90 (104)
70 cd01278 aprataxin_related apra 29.5 51 0.0011 27.3 2.7 34 77-111 42-75 (104)
71 PF14347 DUF4399: Domain of un 27.4 96 0.0021 26.6 4.0 33 412-445 49-81 (87)
72 PRK10785 maltodextrin glucosid 27.1 2.3E+02 0.005 31.4 7.8 61 368-436 21-87 (598)
73 PF14257 DUF4349: Domain of un 26.7 1.3E+02 0.0027 29.5 5.2 47 291-337 135-190 (262)
74 KOG3990 Uncharacterized conser 26.0 46 0.00099 34.4 2.1 45 285-331 217-261 (305)
75 TIGR02375 pseudoazurin pseudoa 25.2 2.2E+02 0.0049 25.4 6.1 16 368-383 23-38 (116)
76 PF11896 DUF3416: Domain of un 25.2 94 0.002 30.0 4.0 40 388-440 55-99 (187)
77 TIGR02325 C_P_lyase_phnF phosp 24.3 94 0.002 29.1 3.8 32 61-92 10-42 (238)
78 PF00730 HhH-GPD: HhH-GPD supe 22.5 87 0.0019 25.9 2.9 34 68-106 18-51 (108)
79 TIGR02404 trehalos_R_Bsub treh 22.5 1.1E+02 0.0023 28.9 3.8 30 62-91 3-33 (233)
80 PF08308 PEGA: PEGA domain; I 22.2 2.5E+02 0.0055 21.7 5.2 42 370-435 4-45 (71)
81 KOG0272 U4/U6 small nuclear ri 22.1 1.5E+02 0.0034 32.5 5.2 79 311-389 111-197 (459)
82 PRK00446 cyaY frataxin-like pr 22.0 2.1E+02 0.0045 25.3 5.2 27 413-443 57-83 (105)
83 PF05524 PEP-utilisers_N: PEP- 21.5 1.2E+02 0.0025 26.2 3.5 48 313-360 32-86 (123)
84 KOG0045 Cytosolic Ca2+-depende 21.1 87 0.0019 35.3 3.3 27 422-448 114-143 (612)
85 PF15290 Syntaphilin: Golgi-lo 20.9 2.1E+02 0.0045 30.0 5.7 38 299-336 65-102 (305)
86 PF07495 Y_Y_Y: Y_Y_Y domain; 20.6 95 0.0021 23.4 2.5 23 419-441 33-58 (66)
87 PF11797 DUF3324: Protein of u 20.4 3.7E+02 0.008 24.2 6.6 24 421-444 102-128 (140)
88 TIGR03337 phnR transcriptional 20.3 1.9E+02 0.004 27.0 4.9 33 62-94 4-37 (231)
89 TIGR02018 his_ut_repres histid 20.1 1.3E+02 0.0028 28.4 3.8 30 62-91 4-34 (230)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=7.9e-24 Score=171.00 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.8
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCee
Q 012643 367 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 446 (459)
Q Consensus 367 LvpVTFtW~g~AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIVDGeW~~DPdnPtv 446 (459)
+++|+|+|+++|++|+|+|+|++|++.+||.+. ..+ |++++.||||.|+|||+|||+|.+||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999985 334 9999999999999999999999999999999
Q ss_pred cc-CCccceEEE
Q 012643 447 TK-GGICNNILR 457 (459)
Q Consensus 447 tD-~G~vNNVLe 457 (459)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=2.3e-18 Score=138.69 Aligned_cols=76 Identities=39% Similarity=0.707 Sum_probs=67.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEee-eCCCCCe
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 445 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIVDGeW~-~DPdnPt 445 (459)
++|+|+|.++ ++.|+|+|+|++|+ .++|.+. ++|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 5789874 569999999999999999999999998 9999997
Q ss_pred ecc--CCccceEE
Q 012643 446 VTK--GGICNNIL 456 (459)
Q Consensus 446 vtD--~G~vNNVL 456 (459)
..+ .|+.|+||
T Consensus 69 ~~~~~~g~~n~v~ 81 (82)
T cd02861 69 YVDDGFGGKNAVF 81 (82)
T ss_pred eecCCCCccceEc
Confidence 654 48889887
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.6e-15 Score=149.53 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.6
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCee
Q 012643 367 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 446 (459)
Q Consensus 367 LvpVTFtW~g~AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIVDGeW~~DPdnPtv 446 (459)
..+|+|+|.++++.|||.|+|++|..+++|.+.. ...|.|.+++.|++|.|+|||+|||+|++|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 4799999999999999999999999999998742 244559999999999999999999999999999999
Q ss_pred cc-CCccceEEEeC
Q 012643 447 TK-GGICNNILRVI 459 (459)
Q Consensus 447 tD-~G~vNNVLeVe 459 (459)
++ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.19 E-value=8.8e-11 Score=96.03 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=63.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECCEeeeCCCCCe
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRES 445 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL-~LPPG~YEYKFIVDGeW~~DPdnPt 445 (459)
..|+|+..++ |++|.|.|+|++|. ..+|.++ ++|.|++++ .|.+|.|+|+|+|||.|..||.++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~-~~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG-SHPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc-cEeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCc
Confidence 4689997776 99999999999886 4789875 589999998 5889999999999999999999999
Q ss_pred ecc-CCccceEE
Q 012643 446 VTK-GGICNNIL 456 (459)
Q Consensus 446 vtD-~G~vNNVL 456 (459)
... .+..-|++
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T cd02858 73 TKPGRQVDTSGV 84 (85)
T ss_pred eeecccccceee
Confidence 874 45544443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.83 E-value=1.5e-08 Score=77.95 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEECCEeeeCCCCCe
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 445 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPP-G~YEYKFIVDGeW~~DPdnPt 445 (459)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.. |.|.|+|.|||.|.+++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4689998886 8999999999997667889864 5699999999987 999999999999999998876
Q ss_pred eccC
Q 012643 446 VTKG 449 (459)
Q Consensus 446 vtD~ 449 (459)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.34 E-value=1.4e-06 Score=74.08 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=51.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-CC
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 435 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~L--------PPG-~YEYKFIV-DG 435 (459)
..++|+..++ |+.|+|+|+||+|+.. .+|.+. +.|+|+++++. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 3688997776 9999999999999864 679874 58999999864 455 56666666 78
Q ss_pred Ee--eeCCCCCeec
Q 012643 436 QW--KVDPQRESVT 447 (459)
Q Consensus 436 eW--~~DPdnPtvt 447 (459)
+| +.||-.-.+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 87 5677666544
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.31 E-value=5.8e-07 Score=71.48 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=46.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEECCE
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 436 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNn-W~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~--LPPG~YEYKFIVDGe 436 (459)
..|+|+..++ |+.|.|.+.|++ |... ++|.+. ...|+|++++. +++|.++|+|.|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 5789997776 999999999999 8655 789831 36899999998 888988888888864
No 8
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.74 E-value=0.00017 Score=58.97 Aligned_cols=67 Identities=28% Similarity=0.561 Sum_probs=48.6
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C--C-
Q 012643 369 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D--G- 435 (459)
Q Consensus 369 pVTFtW~g---~AkeV~LaGS---FNnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV-D--G- 435 (459)
+|+|.... .|+.|+|+|+ +.+|+.. ++|... ..+.|++++.||+| .++|||++ + |
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 46666644 3899999995 6899854 578652 56889999999987 79999996 2 3
Q ss_pred -EeeeCCCCCeec
Q 012643 436 -QWKVDPQRESVT 447 (459)
Q Consensus 436 -eW~~DPdnPtvt 447 (459)
.|...++.-...
T Consensus 70 ~~WE~~~nr~~~~ 82 (95)
T cd05808 70 VTWESGPNRTATT 82 (95)
T ss_pred EEEecCCCEEEEC
Confidence 476666443333
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.59 E-value=0.00024 Score=59.05 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=52.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCE-----
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 436 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~-----~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVDGe----- 436 (459)
.++|+..++ |++|.|.. |++|. ..++|.+. ..|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 488987776 99999987 88886 34678763 6899999986 666765 88888875
Q ss_pred eeeCCCCCeeccCC
Q 012643 437 WKVDPQRESVTKGG 450 (459)
Q Consensus 437 W~~DPdnPtvtD~G 450 (459)
...||-...++..|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 67888887766533
No 10
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.45 E-value=0.00037 Score=57.70 Aligned_cols=58 Identities=22% Similarity=0.454 Sum_probs=45.4
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012643 368 EVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 433 (459)
Q Consensus 368 vpVTFtW~g---~AkeV~LaGSFN---nW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV 433 (459)
+.|+|.... .++.|+|+|+.. +|+.. ++|..... ......|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~--------~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEG--------TENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESS--------SSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccC--------CCCCCeEEEEEECcCCCEEEEEEEE
Confidence 568888754 489999999996 89963 77875310 1246899999999988 79999998
No 11
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.43 E-value=0.00096 Score=54.72 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=49.6
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-CEe--eeCC
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP 441 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG-~YEYKFIVD-GeW--~~DP 441 (459)
.++|+...+ |+.|.|.++|++|... .+|.+. ...|+|.+++. +++| .|.|++..+ |.| ..||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 477886665 9999999999999643 578764 24899999885 6666 444444444 333 4466
Q ss_pred CCCeeccCCccceEE
Q 012643 442 QRESVTKGGICNNIL 456 (459)
Q Consensus 442 dnPtvtD~G~vNNVL 456 (459)
-..-++.....+.|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 554444333355543
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00023 Score=78.00 Aligned_cols=66 Identities=26% Similarity=0.464 Sum_probs=52.1
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCE-----e
Q 012643 366 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 437 (459)
Q Consensus 366 gLvpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVDGe-----W 437 (459)
|...|+|+..++ +..|.|.|+||+|+.. .+|... ++.|.|.++++ +++| +.|||.|++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 566899997776 9999999999999863 344321 36799999998 9999 9999998754 3
Q ss_pred eeCCCC
Q 012643 438 KVDPQR 443 (459)
Q Consensus 438 ~~DPdn 443 (459)
+.||-.
T Consensus 102 ~~DP~a 107 (628)
T COG0296 102 KADPYA 107 (628)
T ss_pred ccCchh
Confidence 666644
No 13
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.22 E-value=0.0012 Score=55.51 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=41.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECC
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG 435 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~--~~IpM~Kd~s~~~~~~~g~k~sGvFsttL-~LPPG~YEYKFIVDG 435 (459)
.++|+..++ |+.|.|.. |++|. ..++|.+. ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g 66 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG 66 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence 478987776 99999988 66664 34688763 579999998 567776 79999999
No 14
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.22 E-value=0.002 Score=55.94 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.3
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012643 369 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 433 (459)
Q Consensus 369 pVTFtW~g----~AkeV~LaGS---FNnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV 433 (459)
.|+|.... .++.|+|+|+ +.+|+.. ++|.... ...+.|++.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 36666655 3899999999 8899844 5787531 145789999999998 89999999
No 15
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.14 E-value=0.003 Score=52.67 Aligned_cols=68 Identities=26% Similarity=0.437 Sum_probs=50.6
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC--
Q 012643 368 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 435 (459)
Q Consensus 368 vpVTFtW~g---~AkeV~LaGSF---NnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV---DG-- 435 (459)
+.|+|+.++ .|+.|+|+|+- .+|++..+|.. ..+.|.+.+.||+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356777655 38999999988 59997677764 24579999999988 79999998 44
Q ss_pred EeeeCCCCCeecc
Q 012643 436 QWKVDPQRESVTK 448 (459)
Q Consensus 436 eW~~DPdnPtvtD 448 (459)
.|...++.-...+
T Consensus 69 ~WE~g~Nr~~~~~ 81 (92)
T cd05818 69 IWEGGNNRVLELP 81 (92)
T ss_pred EEEeCCCEEEEcc
Confidence 4877666544443
No 16
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.05 E-value=0.0019 Score=69.97 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=48.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-CCEe--eeC
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 440 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG-~YEYKFIV-DGeW--~~D 440 (459)
..|+|+...+ |++|+|.|+|++|... .+|.+. ..|+|++++. +.+| .|.|++.+ ||.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 3789998776 9999999999999865 678763 6799999997 4455 67777654 5765 345
Q ss_pred CCCC
Q 012643 441 PQRE 444 (459)
Q Consensus 441 PdnP 444 (459)
|-..
T Consensus 106 Pya~ 109 (633)
T PRK12313 106 PFAF 109 (633)
T ss_pred CceE
Confidence 5443
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.04 E-value=0.0026 Score=71.18 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccchhhccccchHHHHHHHhhcCCceEEEEEEecC-CceEEEEeee
Q 012643 309 FMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGD-GEIVEVAGSF 387 (459)
Q Consensus 309 ~ml~qkele~~r~k~qie~~K~~La~l~~k~~~ei~eA~kLl~eK~~~LdaAe~aLsgLvpVTFtW~g~-AkeV~LaGSF 387 (459)
.-+..+...+.+.+++|++..-.|.- --.+|+..=|+..- ..++|+..++ |+.|+|+|+|
T Consensus 74 ~~~~~r~~~~~~~~~~i~~~~~~l~~--f~~~y~~lGa~~~~-----------------~g~~FrvWAP~A~~V~LvGdF 134 (758)
T PLN02447 74 DHLRYRYSRYRRRREEIEKNEGGLEA--FSRGYEKFGFNRSE-----------------GGITYREWAPGAKAAALIGDF 134 (758)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHH--HHHHHHhceeEEec-----------------CCEEEEEECCCCCEEEEEEec
Confidence 33445555666667777654444422 11133333333210 2688997676 9999999999
Q ss_pred CCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEC---CE--eeeCCCC
Q 012643 388 NGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ--WKVDPQR 443 (459)
Q Consensus 388 NnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~-------LPPG~YEYKFIVD---Ge--W~~DPdn 443 (459)
|+|... .+|.+. ..|+|++.++ ++.|. .|||.|. |. .+.||-.
T Consensus 135 N~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya 190 (758)
T PLN02447 135 NNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWI 190 (758)
T ss_pred CCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchH
Confidence 999865 578864 6799999985 34453 6777774 54 3566643
No 18
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.02 E-value=0.0023 Score=71.41 Aligned_cols=68 Identities=26% Similarity=0.454 Sum_probs=52.1
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEE---CCEee-
Q 012643 366 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIV---DGQWK- 438 (459)
Q Consensus 366 gLvpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL-~LPPG~YEYKFIV---DGeW~- 438 (459)
|..-|+|+..++ |+.|.|+|+||+|..+ .+|.+. ..|+|++.+ .+.+| ..|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 445789998777 9999999999999865 678753 689999998 47788 3577777 78764
Q ss_pred -eCCCCCee
Q 012643 439 -VDPQRESV 446 (459)
Q Consensus 439 -~DPdnPtv 446 (459)
.||-.-..
T Consensus 203 k~DPYA~~~ 211 (730)
T PRK12568 203 KADPVARQT 211 (730)
T ss_pred cCCCcceEe
Confidence 67755443
No 19
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=96.99 E-value=0.0047 Score=51.97 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=49.7
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 012643 367 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 434 (459)
Q Consensus 367 LvpVTFtW~g----~AkeV~LaG---SFNnW~~~I-pM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV---D 434 (459)
.++|+|.... .|+.|+|+| .+.+|+... +|.... ....+.|.+.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 4688898743 389999999 567998541 232210 0245789999999998 79999999 4
Q ss_pred C---EeeeCCCCCeecc
Q 012643 435 G---QWKVDPQRESVTK 448 (459)
Q Consensus 435 G---eW~~DPdnPtvtD 448 (459)
| .|...++.-...+
T Consensus 73 ~~~~~WE~g~nr~~~~p 89 (99)
T cd05809 73 GTNKSWQGGQQSWYPVP 89 (99)
T ss_pred CCeeEEecCCCeeEECC
Confidence 4 3766655443333
No 20
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=96.95 E-value=0.0076 Score=51.24 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=51.6
Q ss_pred eEEEEEEec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012643 368 EVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 433 (459)
Q Consensus 368 vpVTFtW~g-----~AkeV~LaGSF---NnW~~~I-----pM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV 433 (459)
++|+|.... .|+.|+|+|+- .+|+... +|.. .....|.+.+.||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 688999863 38999999987 4998632 4542 245789999999998 79999998
Q ss_pred ---CC--EeeeCCCCCeecc
Q 012643 434 ---DG--QWKVDPQRESVTK 448 (459)
Q Consensus 434 ---DG--eW~~DPdnPtvtD 448 (459)
|| .|...++.-...+
T Consensus 71 ~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 71 APADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred ECCCCCEEEEeCCCEeEECC
Confidence 45 3877766655554
No 21
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.80 E-value=0.0038 Score=53.44 Aligned_cols=61 Identities=25% Similarity=0.419 Sum_probs=44.6
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECCEeeeC
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVD 440 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~---~--~IpM~Kd~s~~~~~~~g~k~sGvFsttL-~LPPG~YEYKFIVDGeW~~D 440 (459)
.++|+..++ |+.|.|.. |++|. . .++|.+.. .+..|+|.+.+ .+.+|. .|+|.|+|.|..+
T Consensus 8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 488987776 99999998 88886 2 35676531 12469999988 477886 6999999865433
No 22
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.77 E-value=0.0042 Score=72.70 Aligned_cols=66 Identities=33% Similarity=0.607 Sum_probs=50.0
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEC---CEe--
Q 012643 366 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVD---GQW-- 437 (459)
Q Consensus 366 gLvpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL-~LPPG~YEYKFIVD---GeW-- 437 (459)
|..-|.|+..++ |+.|+|+|+||+|..+ .+|.+. ...|+|++.+ .+.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 445788997776 9999999999999865 578753 2579999988 488885 6888885 555
Q ss_pred eeCCCC
Q 012643 438 KVDPQR 443 (459)
Q Consensus 438 ~~DPdn 443 (459)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 456644
No 23
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.77 E-value=0.014 Score=48.99 Aligned_cols=74 Identities=27% Similarity=0.554 Sum_probs=50.7
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C--
Q 012643 367 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-- 434 (459)
Q Consensus 367 LvpVTFtW~g---~AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV-D-- 434 (459)
.+.|+|...+ .|+.|+|+|+. .+|+.. ++|.... .....+.|.+.+.||+| .++|||+| +
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3567887654 38999999987 489864 5675420 01235789999999988 59999996 2
Q ss_pred C--EeeeCCCCCeecc
Q 012643 435 G--QWKVDPQRESVTK 448 (459)
Q Consensus 435 G--eW~~DPdnPtvtD 448 (459)
| .|...++.-...+
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3876665444344
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.72 E-value=0.0044 Score=68.00 Aligned_cols=66 Identities=32% Similarity=0.459 Sum_probs=49.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC---Ee--ee
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 439 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVDG---eW--~~ 439 (459)
..|+|+..++ |++|+|+|+||+|... .+|.+. ..|+|++.+. +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 4689997776 9999999999999864 688764 4699999985 4566 468888865 43 56
Q ss_pred CCCCCee
Q 012643 440 DPQRESV 446 (459)
Q Consensus 440 DPdnPtv 446 (459)
||-.-..
T Consensus 105 DPYa~~~ 111 (639)
T PRK14706 105 DPYGSFF 111 (639)
T ss_pred CcceEEE
Confidence 6655433
No 25
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.63 E-value=0.007 Score=51.00 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=36.3
Q ss_pred CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012643 378 GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 433 (459)
Q Consensus 378 AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV 433 (459)
|+.|+|+|+- .+|+.. ++|... ....|++++.||+| .++|||+|
T Consensus 13 Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 13 GEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 8999999995 689854 567642 45689999999988 69999998
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.55 E-value=0.0077 Score=66.55 Aligned_cols=64 Identities=30% Similarity=0.505 Sum_probs=47.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-CEe--eeC
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 440 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG-~YEYKFIVD-GeW--~~D 440 (459)
..|+|+...+ |++|.|.|+||+|... .+|.+. ...|+|++++. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 3589998777 9999999999999764 578764 26799999884 6777 677777665 454 344
Q ss_pred CC
Q 012643 441 PQ 442 (459)
Q Consensus 441 Pd 442 (459)
|-
T Consensus 200 PY 201 (726)
T PRK05402 200 PY 201 (726)
T ss_pred Cc
Confidence 43
No 27
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.48 E-value=0.013 Score=48.60 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.4
Q ss_pred EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012643 369 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 433 (459)
Q Consensus 369 pVTFtW~g----~AkeV~LaGSF---NnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV 433 (459)
+|+|+..+ +++.|+|+|+- -+|+...+|... ..+.|.+.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 56777644 35778999987 489877788642 45789999999988 59999998
No 28
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.44 E-value=0.013 Score=47.55 Aligned_cols=45 Identities=27% Similarity=0.540 Sum_probs=37.1
Q ss_pred CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccC-CCcEEEEEEeCC--e-eEEEEEEE
Q 012643 377 DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRK-SRLWSTVLWLYP--G-TYEIKFIV 433 (459)
Q Consensus 377 ~AkeV~LaGSFN---nW~~~--IpM~Kd~s~~~~~~~g~k~-sGvFsttL~LPP--G-~YEYKFIV 433 (459)
.|+.|+|+|+.. +|+.. ++|... . .+.|.+.+.||+ | .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~------------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTS------------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCC------------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 489999999984 89853 677653 3 689999999999 7 79999998
No 29
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.43 E-value=0.037 Score=46.51 Aligned_cols=67 Identities=25% Similarity=0.560 Sum_probs=47.6
Q ss_pred EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--C--
Q 012643 370 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 434 (459)
Q Consensus 370 VTFtW~g----~AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG--~YEYKFIV--D-- 434 (459)
|+|+... .|+.|+|+|+. .+|+.. ++|... ....|.+.+.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5566543 38999999986 589854 577642 46789999999986 58999998 2
Q ss_pred C--EeeeCCCCCeecc
Q 012643 435 G--QWKVDPQRESVTK 448 (459)
Q Consensus 435 G--eW~~DPdnPtvtD 448 (459)
| .|..-++.-...+
T Consensus 70 ~~~~WE~g~nr~~~~p 85 (99)
T cd05816 70 GVVSWENGPNRELSAP 85 (99)
T ss_pred CcEEEEcCCCeEEECC
Confidence 2 2766655544443
No 30
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.41 E-value=0.029 Score=47.16 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=50.0
Q ss_pred ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 012643 367 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 433 (459)
Q Consensus 367 LvpVTFtW~g----~AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV--- 433 (459)
.++|+|.... .|+.|+|+|+- .+|+.. +.|.... .......|.+.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~--------~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQ--------VVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHcccccccc--------CCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 4678888742 38999999987 499854 2222100 01245789999999998 79999998
Q ss_pred CCE--eeeCCCCCeecc
Q 012643 434 DGQ--WKVDPQRESVTK 448 (459)
Q Consensus 434 DGe--W~~DPdnPtvtD 448 (459)
||. |...++.-...+
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 343 766665544444
No 31
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.41 E-value=0.0073 Score=64.77 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=49.2
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC-EeeeCCCCCee
Q 012643 370 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 446 (459)
Q Consensus 370 VTFtW~g~-AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVDG-eW~~DPdnPtv 446 (459)
|+|+..++ |++|.|.+. + ..++|.+. ..|+|++++. +.+| |.|+|.||| .-..||-....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57887776 999999972 3 35789874 5799999995 7788 789999999 67889988765
Q ss_pred cc
Q 012643 447 TK 448 (459)
Q Consensus 447 tD 448 (459)
..
T Consensus 64 ~~ 65 (542)
T TIGR02402 64 PD 65 (542)
T ss_pred cc
Confidence 43
No 32
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.35 E-value=0.018 Score=46.89 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=46.9
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC-CEeeeCCCCCee
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRESV 446 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIVD-GeW~~DPdnPtv 446 (459)
.++|+..++ |++|.|.... |. .++|.+. ..|.|++++.--+|. .|+|.|+ |..+.||-....
T Consensus 9 ~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 9 GTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred CEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 588997776 9999999643 43 5788764 689999998533775 4777777 567889988765
Q ss_pred cc
Q 012643 447 TK 448 (459)
Q Consensus 447 tD 448 (459)
..
T Consensus 73 ~~ 74 (85)
T cd02853 73 PE 74 (85)
T ss_pred CC
Confidence 43
No 33
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.87 E-value=0.052 Score=45.89 Aligned_cols=68 Identities=26% Similarity=0.434 Sum_probs=47.7
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 012643 369 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 435 (459)
Q Consensus 369 pVTFtW~-g---~AkeV~LaGSFN---nW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV---DG 435 (459)
+|+|... + .++.|+|+|+.. +|+.. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 5666632 2 389999999884 99854 556532 45789999999998 79999998 12
Q ss_pred -----EeeeCCCCCeecc
Q 012643 436 -----QWKVDPQRESVTK 448 (459)
Q Consensus 436 -----eW~~DPdnPtvtD 448 (459)
.|...++.-...+
T Consensus 70 ~~~~v~WE~g~Nr~~~~p 87 (97)
T cd05810 70 PTAGVQWQGGGNNQLTTG 87 (97)
T ss_pred CcceEEEeeCCCEEEeCC
Confidence 4766666544433
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.65 E-value=0.035 Score=60.34 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=49.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---CE--eee
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 439 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~-IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVD---Ge--W~~ 439 (459)
..++|+..++ |+.|.|.|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4688997776 9999999999999765 578753 24799999885 45665 5888884 54 467
Q ss_pred CCCCCee
Q 012643 440 DPQRESV 446 (459)
Q Consensus 440 DPdnPtv 446 (459)
||-.-..
T Consensus 96 DPYA~~~ 102 (613)
T TIGR01515 96 DPYAFYA 102 (613)
T ss_pred CCCEeee
Confidence 8765433
No 35
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.53 E-value=0.028 Score=62.31 Aligned_cols=62 Identities=21% Similarity=0.076 Sum_probs=45.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--CCEe--eeCCCC
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQW--KVDPQR 443 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIV--DGeW--~~DPdn 443 (459)
-|+|+..++ |++|.|+|+||+ ....+|.+. ...|+|++.+++..|.. |||.| ||+| +.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 578886666 999999999996 334688863 36799999999778843 55555 8864 567654
No 36
>PLN02316 synthase/transferase
Probab=95.42 E-value=0.1 Score=60.75 Aligned_cols=59 Identities=14% Similarity=0.418 Sum_probs=44.6
Q ss_pred eEEEEEEec------CCceEEEEeeeCCCccccc----cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC
Q 012643 368 EVVEIQYSG------DGEIVEVAGSFNGWHHRIK----MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 435 (459)
Q Consensus 368 vpVTFtW~g------~AkeV~LaGSFNnW~~~Ip----M~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIV-DG 435 (459)
.+|++.|+. +..+|+|.|.||+|.+... |.+. ..+.++.|.+++.+|+.-|-.-|+. ||
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~---------~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKS---------EEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecc---------cCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 589999973 3689999999999997532 2221 1124558889999999999999986 55
No 37
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.77 E-value=0.075 Score=44.45 Aligned_cols=61 Identities=25% Similarity=0.605 Sum_probs=38.0
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC--Ee
Q 012643 369 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 437 (459)
Q Consensus 369 pVTFtW~g------~AkeV~LaGSFNnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIV-DG--eW 437 (459)
+|+|.|.. ++..|++.+.|++|+.. +.|.+.. . ....+.|++++.+|...|+..|.. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~-------~-~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC-------V-PDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES-------S----TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee-------e-eecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67888843 37899999999999876 4566531 0 013799999999999999999997 65 56
No 38
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.35 E-value=0.17 Score=42.44 Aligned_cols=55 Identities=20% Similarity=0.465 Sum_probs=39.3
Q ss_pred EEEEEec--C-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 012643 370 VEIQYSG--D-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 433 (459)
Q Consensus 370 VTFtW~g--~-AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV 433 (459)
|+|...+ . |+.|+|+|+- .+|... ++|.... ......|++.+.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~---------~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSH---------QGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecC---------CCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 4555443 3 8999999987 589654 5675310 1134589999999987 69999999
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.68 E-value=0.19 Score=54.58 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=46.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEECCE--ee
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 438 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~~-----~IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG-~YEYKFIVDGe--W~ 438 (459)
.|+|+..++ |++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++-.+|. +.
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489997776 99999997 888853 3578763 5799999986 5666 44444444565 47
Q ss_pred eCCCCCeec
Q 012643 439 VDPQRESVT 447 (459)
Q Consensus 439 ~DPdnPtvt 447 (459)
.||-.....
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 888665443
No 40
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.88 E-value=0.64 Score=41.30 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=52.9
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEECCE-
Q 012643 368 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 436 (459)
Q Consensus 368 vpVTFtW~----g~AkeV~LaGSFNnW~~~-----IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIVDGe- 436 (459)
..|||-|. +....|.|-|..|++..+ -.|.+- .+..+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 446789999999999654 346554 367899999999998 88999997533
Q ss_pred ---------------eeeCCCCCeecc-----CCccceEEE
Q 012643 437 ---------------WKVDPQRESVTK-----GGICNNILR 457 (459)
Q Consensus 437 ---------------W~~DPdnPtvtD-----~G~vNNVLe 457 (459)
-..||-||.... .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 356999997642 256666665
No 41
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=92.75 E-value=0.89 Score=40.32 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=38.3
Q ss_pred EEecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 012643 373 QYSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 433 (459)
Q Consensus 373 tW~g~AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG----~YEYKFIV 433 (459)
++-.++.+|+|+|+- -+|+.. ++|...... ........|.+.+.||+| ..+|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 344568999999986 589854 556542000 000134579999999986 69999998
No 42
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.31 E-value=0.55 Score=49.06 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCceEEEEEEecC-C-------ceEEEEee--eCC--CccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEE
Q 012643 365 SGLEVVEIQYSGD-G-------EIVEVAGS--FNG--WHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKF 431 (459)
Q Consensus 365 sgLvpVTFtW~g~-A-------keV~LaGS--FNn--W~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKF 431 (459)
.+.+.|||-|.++ + ..|+|.+. .+. +..+..|.+- .+..+|..++.||.. +-.|.|
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~sY~~ 104 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGSYCF 104 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEEEEE
Confidence 4668999999985 3 25887422 221 3333467765 368899999999998 899999
Q ss_pred EEC---C-------------------------EeeeCCCCCeeccC--CccceEEEe
Q 012643 432 IVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV 458 (459)
Q Consensus 432 IVD---G-------------------------eW~~DPdnPtvtD~--G~vNNVLeV 458 (459)
+++ . .-..||.||..... |...++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 105 IPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 993 1 11479999976542 443467654
No 43
>PLN02316 synthase/transferase
Probab=92.17 E-value=0.86 Score=53.37 Aligned_cols=55 Identities=27% Similarity=0.462 Sum_probs=43.1
Q ss_pred eEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 012643 368 EVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 433 (459)
Q Consensus 368 vpVTFtW~g~------AkeV~LaGSFNnW~~~I------pM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIV 433 (459)
.+|++.|+.. ..+|++.|+||+|.++. +|.+. ...+.|.+++.+|...|-.-|+-
T Consensus 491 ~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 491 TTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 5899999652 68999999999999763 24442 23356689999999999999987
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=91.21 E-value=1.3 Score=51.15 Aligned_cols=71 Identities=20% Similarity=0.382 Sum_probs=52.7
Q ss_pred CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE-
Q 012643 366 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV- 433 (459)
Q Consensus 366 gLvpVTFtW~g----~AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG--~YEYKFIV- 433 (459)
..+.|+|+... .|..|+|+|+- .+|+.. ++|.. .....|++.+.+|++ ..+|||++
T Consensus 151 ~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 151 DEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred CceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 34788888644 38999999987 499854 45653 256789999999988 58999998
Q ss_pred --CC--EeeeCCCCCeecc
Q 012643 434 --DG--QWKVDPQRESVTK 448 (459)
Q Consensus 434 --DG--eW~~DPdnPtvtD 448 (459)
+| .|-..++.-...+
T Consensus 219 ~~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 219 TAEGLVSLELGVNRELSLD 237 (909)
T ss_pred cCCCceEEeeCCCceeecC
Confidence 44 3877776655554
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=89.89 E-value=0.75 Score=51.37 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=41.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 437 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~~----~IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVDGeW 437 (459)
.|+|+..++ |+.|.|. -|++|.. .++|.+. ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 588997776 9999985 6766542 3567652 5799999995 778875 999999854
No 46
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.63 E-value=0.7 Score=51.42 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=41.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 437 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~--~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVDGeW 437 (459)
.|.|+..++ |+.|.|.. |++|. ..++|.+ +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 589987776 99999986 76653 2467764 35799999984 66775 4999999854
No 47
>PLN02950 4-alpha-glucanotransferase
Probab=88.67 E-value=2.4 Score=49.06 Aligned_cols=67 Identities=19% Similarity=0.452 Sum_probs=46.8
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C--C
Q 012643 368 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D--G 435 (459)
Q Consensus 368 vpVTFtW~g---~AkeV~LaGSF---NnW~~~--IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG-~YEYKFIV-D--G 435 (459)
+.|+|..++ -|++|+|+|+- .+|+.. ++|... +......|++++.||+| ..+|||++ | |
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 566676654 38999999988 479754 667532 01234589999999987 69999994 3 4
Q ss_pred E---eeeCCCC
Q 012643 436 Q---WKVDPQR 443 (459)
Q Consensus 436 e---W~~DPdn 443 (459)
. |-..++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666543
No 48
>PLN02960 alpha-amylase
Probab=87.45 E-value=1.8 Score=50.14 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=66.5
Q ss_pred HHHHHhcccchhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccchhhccccchHHHHHHHhhcCCceEE
Q 012643 291 VEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVV 370 (459)
Q Consensus 291 ~~~~~~~~~~~~e~~~l~~ml~qkele~~r~k~qie~~K~~La~l~~k~~~ei~eA~kLl~eK~~~LdaAe~aLsgLvpV 370 (459)
|..-+...=.+--| ..-|.-+--.|+++|.+|-+--+.|-. ---+|++.=+|.-. -.-|
T Consensus 72 vgf~~~~~~~~~~f---~~~l~~r~~~~~~~~~~~~~~~~~~~~--~~~~~e~~g~~~~~----------------~~~~ 130 (897)
T PLN02960 72 VGFLTRLGISDRAF---AQFLRERHKALKDLKWEIFKRHIDLKE--FASGFELLGMHRHP----------------EHRV 130 (897)
T ss_pred hhhhhhhcccHHHH---HHHHHHHHHHHHHHHHHHHHhhccHHH--HhhHHHHhccccCc----------------ccCe
Confidence 55555444333322 334445555667777776555544422 01122222222111 1256
Q ss_pred EEE-EecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEE--EeCCee-------EEEEEEEC
Q 012643 371 EIQ-YSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT-------YEIKFIVD 434 (459)
Q Consensus 371 TFt-W~g~AkeV~LaGSFNnW~~~I-pM~Kd~s~~~~~~~g~k~sGvFsttL--~LPPG~-------YEYKFIVD 434 (459)
.|. |.-+|..+.|+|+||||.+.- .|.+ +..++.+-|.|.+++ .|..|. -||.|..|
T Consensus 131 ~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 131 DFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 666 555699999999999999873 4542 123445789999998 587773 36788776
No 49
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=86.67 E-value=1.7 Score=51.42 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=45.9
Q ss_pred EEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEECC---
Q 012643 370 VEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG--- 435 (459)
Q Consensus 370 VTFtW~g~-AkeV~LaGS-FNnW~~---~IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG-----~YEYKFIVDG--- 435 (459)
++|+..++ |.+|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~ 396 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGD 396 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCCc
Confidence 78997776 999999984 455653 4688763 6899999986 5543 3788999876
Q ss_pred -EeeeCCCCC
Q 012643 436 -QWKVDPQRE 444 (459)
Q Consensus 436 -eW~~DPdnP 444 (459)
....||-..
T Consensus 397 ~~~~~DPYA~ 406 (1111)
T TIGR02102 397 KVLALDPYAK 406 (1111)
T ss_pred eEEEeChhhe
Confidence 356777554
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=83.35 E-value=3 Score=48.39 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=46.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------CE-
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 436 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~--~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVD------Ge- 436 (459)
..|+|+..++ |+.|.|.+..++|. ..++|.++ ...|+|++.+. ...|.| |+|.|+ |.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 3689997776 99999997776663 23678764 25799999985 456653 777775 53
Q ss_pred ---eeeCCCCCeec
Q 012643 437 ---WKVDPQRESVT 447 (459)
Q Consensus 437 ---W~~DPdnPtvt 447 (459)
...||-.-...
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 36777655443
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=82.29 E-value=7.2 Score=32.35 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=37.6
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 012643 368 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 433 (459)
Q Consensus 368 vpVTFtW~g---~AkeV~LaGSFNn--W~-~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIV 433 (459)
.+|+|+..- +...|.|.-.-+. |. ..++|.+..+ +.....|++++.++.|.+.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 455555532 3678888755443 22 2478876521 112246999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=72.64 E-value=11 Score=45.25 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=42.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 437 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~----IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVDGeW 437 (459)
..|+|+...+ |+.|.|. .|+.|... ++|.. +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3589987666 9999997 89888643 45542 35789998874 88897 6999999855
No 53
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=55.54 E-value=23 Score=37.72 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=31.0
Q ss_pred EEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EeCCeeEEEEEEECCE
Q 012643 382 EVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGTYEIKFIVDGQ 436 (459)
Q Consensus 382 ~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL--~LPPG~YEYKFIVDGe 436 (459)
.+.|+|.. .+..++.. .++|+|+..+ ..+||.|+..+.+||.
T Consensus 152 ~vvg~f~D--dG~g~DE~-----------p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-----------PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-----------CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 47788853 34555543 3689999876 5679999999999984
No 54
>PLN02877 alpha-amylase/limit dextrinase
Probab=52.63 E-value=32 Score=40.69 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=35.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC
Q 012643 369 VVEIQYSGD-GEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD 434 (459)
Q Consensus 369 pVTFtW~g~-AkeV~LaGSFNnW~~~-----IpM~Kd~s~~~~~~~g~k~sGvFsttL~-LPPG~YEYKFIVD 434 (459)
.++|+..++ |..|.|.- |++|... ++|. ...|+|++.+. ...| +.|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEe
Confidence 689997776 99999984 6655321 3454 25899999985 3456 44778886
No 55
>PLN03244 alpha-amylase; Provisional
Probab=50.56 E-value=12 Score=43.37 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=41.2
Q ss_pred EEEE-EEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EeCCee-------EEEEEEEC
Q 012643 369 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT-------YEIKFIVD 434 (459)
Q Consensus 369 pVTF-tW~g~AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL--~LPPG~-------YEYKFIVD 434 (459)
.++| .|.-+|.--.|+|+||||.+.-...+. +..++.+-|.|.+.+ .|..|. -||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 3444 477779999999999999976444332 112345789999998 577773 36666554
No 56
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.01 E-value=22 Score=40.27 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=43.0
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccchhhccccchH
Q 012643 304 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 355 (459)
Q Consensus 304 ~~~l~~ml~qkele~~r~k~qie~~K~~La~l~~k~~~ei~eA~kLl~eK~~ 355 (459)
|+++|..+-|+++|+++||.+||.+.-++.-+....-.++.-...||-.+.+
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 5678999999999999999999999998888777777777777776655444
No 57
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=47.94 E-value=48 Score=28.60 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=40.5
Q ss_pred EEEEEEe-cCCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC--CE-ee
Q 012643 369 VVEIQYS-GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD--GQ-WK 438 (459)
Q Consensus 369 pVTFtW~-g~AkeV~La-GSFNnW----~-~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIVD--Ge-W~ 438 (459)
.|.|+-. ++.++|.|. |.-..| . ..++|.+.. .+..-..|++++.++..+..|.|.|- |+ |-
T Consensus 24 ~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~ 95 (120)
T PF02903_consen 24 HIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGETYY 95 (120)
T ss_dssp EEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEEEE
T ss_pred EEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 3444443 357889986 666655 1 226787642 12344588999999999888888873 43 55
Q ss_pred eCCCC
Q 012643 439 VDPQR 443 (459)
Q Consensus 439 ~DPdn 443 (459)
++..-
T Consensus 96 y~~~G 100 (120)
T PF02903_consen 96 YGERG 100 (120)
T ss_dssp EETTE
T ss_pred EeCCc
Confidence 55443
No 58
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=46.87 E-value=54 Score=30.08 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=33.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEE
Q 012643 368 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 430 (459)
Q Consensus 368 vpVTFtW~g~-AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYK 430 (459)
-+|+|.|... ++.|...+...-|... .+.- +.+-.|+.++.- ||.|.|+
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 4799999988 9999999888555432 2211 234566666654 9999886
No 59
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=46.24 E-value=62 Score=28.14 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=40.4
Q ss_pred EEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------eEEEEEEECCE--
Q 012643 369 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ-- 436 (459)
Q Consensus 369 pVTFtW~g~--AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG--------~YEYKFIVDGe-- 436 (459)
..++....- .+.|.|.=+||+|.....+.-..............-..|..++.||+. .+-.+|.|+|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ey 101 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEY 101 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEE
Confidence 344555443 688999999999986644321100000000111233588888888754 57889999995
Q ss_pred eee
Q 012643 437 WKV 439 (459)
Q Consensus 437 W~~ 439 (459)
|-.
T Consensus 102 WDN 104 (113)
T PF03370_consen 102 WDN 104 (113)
T ss_dssp EES
T ss_pred ecC
Confidence 543
No 60
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=43.46 E-value=27 Score=40.17 Aligned_cols=41 Identities=24% Similarity=0.492 Sum_probs=29.9
Q ss_pred EEEEEecC-CceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEE
Q 012643 370 VEIQYSGD-GEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLW 421 (459)
Q Consensus 370 VTFtW~g~-AkeV~LaGSFNnW~~~I-pM~Kd~s~~~~~~~g~k~sGvFsttL~ 421 (459)
|.++-.++ ++.|.++|.||+|+... .|.. ....|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecC
Confidence 77775554 99999999999998652 2331 136789998876
No 61
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=43.16 E-value=26 Score=27.01 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhcCCCCC-CCCChHHHHHhc
Q 012643 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHG 92 (459)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~-~vps~kel~~hg 92 (459)
+.++..|++-+.+-.+|+| .+||..+|.++=
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~ 34 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY 34 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh
Confidence 4678899999999999998 789999999863
No 62
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.51 E-value=44 Score=37.26 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEEC---CEeeeCCCC
Q 012643 412 KSRLWSTVLWLYPG-TYEIKFIVD---GQWKVDPQR 443 (459)
Q Consensus 412 ~sGvFsttL~LPPG-~YEYKFIVD---GeW~~DPdn 443 (459)
.+|.|-+.++++|| .|.|+|.|| |.+.+-+..
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~ 131 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHV 131 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecc
Confidence 36688899999999 899999999 554444433
No 63
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=38.52 E-value=41 Score=24.25 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCCC-CCCChHHHHHhchhhH
Q 012643 64 LYNDLREFLSTVGLSES-HVPSMKELSAHGRDDL 96 (459)
Q Consensus 64 l~~d~~ef~s~~~lp~~-~vps~kel~~hgr~dl 96 (459)
++..|+..+....++++ .+||.+||+++=-...
T Consensus 1 i~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~ 34 (60)
T smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSR 34 (60)
T ss_pred CHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCH
Confidence 35667777777777654 6899999998754433
No 64
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=37.40 E-value=75 Score=26.41 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.6
Q ss_pred eEEEEEEecC---CceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-C-CEeeeC
Q 012643 368 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 440 (459)
Q Consensus 368 vpVTFtW~g~---AkeV~LaGSF-NnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIV-D-GeW~~D 440 (459)
-.|.|.+.++ -..|+|.+.- ..| ++|.+. -...|.+.-.++.|-+.+|+-. | |+|...
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4577777765 2679999544 447 588863 3568998877888899999988 7 887653
No 65
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=33.75 E-value=29 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.9
Q ss_pred chhhHHHHHHhhhHHHH
Q 012643 92 GRDDLANIVRRRGYKFI 108 (459)
Q Consensus 92 gr~dlan~vrrrgyk~i 108 (459)
-..+++.+.|..||.|=
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 55678889999999874
No 66
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.55 E-value=74 Score=22.86 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHh
Q 012643 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (459)
Q Consensus 66 ~d~~ef~s~~~lp~~~vps~kel~~hgr~dlan~vrr 102 (459)
+||++|+...|+|...-. .-|++|-+.||.
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999876654 456777777764
No 67
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=32.42 E-value=1.1e+02 Score=28.10 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCCC-CCCChHHHHHhchhhHHHHHHhhhHHHHHHHHhCCCCCCCCcccccccc
Q 012643 63 ELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSL 129 (459)
Q Consensus 63 ~l~~d~~ef~s~~~lp~~-~vps~kel~~hgr~dlan~vrrrgyk~i~~ll~~~~~~~~n~~~~e~~~ 129 (459)
-+++-|++=+..=-|+|| +|||++||-.+=.+-.. -| .|+|+-..+.===-+.-+..-|+.|...
T Consensus 15 QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpn-Tv-~raY~eLE~eG~i~t~rg~G~fV~~~~~ 80 (125)
T COG1725 15 QIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPN-TV-QRAYQELEREGIVETKRGKGTFVTEDAK 80 (125)
T ss_pred HHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHH-HH-HHHHHHHHHCCCEEEecCeeEEEcCCch
Confidence 455666666666666666 69999999877666543 34 4578655432100113344446665543
No 68
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=31.93 E-value=15 Score=31.06 Aligned_cols=13 Identities=62% Similarity=1.595 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEeec
Q 012643 19 LWQWHPPRKHLSFTICCAS 37 (459)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (459)
+||||| |||.++.
T Consensus 47 ~~q~HP------FTIas~~ 59 (105)
T PF08022_consen 47 FWQWHP------FTIASSP 59 (105)
T ss_dssp -------------------
T ss_pred cccccc------cEeeccC
Confidence 799998 7775443
No 69
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=29.53 E-value=1.1e+02 Score=25.63 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=9.4
Q ss_pred CcEEEEE-EeCCeeEEE
Q 012643 414 RLWSTVL-WLYPGTYEI 429 (459)
Q Consensus 414 GvFsttL-~LPPG~YEY 429 (459)
..++.++ .+.||.|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4456555 889999877
No 70
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=29.47 E-value=51 Score=27.27 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCCCCCChHHHHHhchhhHHHHHHhhhHHHHHHH
Q 012643 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (459)
Q Consensus 77 lp~~~vps~kel~~hgr~dlan~vrrrgyk~i~~l 111 (459)
+|-.|+++..||.+..+.+||.+++ ++.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5778999999999999999999988 777766654
No 71
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=27.38 E-value=96 Score=26.56 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCe
Q 012643 412 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 445 (459)
Q Consensus 412 ~sGvFsttL~LPPG~YEYKFIVDGeW~~DPdnPt 445 (459)
+.|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 4566678899999999999887 55666666654
No 72
>PRK10785 maltodextrin glucosidase; Provisional
Probab=27.11 E-value=2.3e+02 Score=31.44 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=38.5
Q ss_pred eEEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeeEEEEEEE--CCE
Q 012643 368 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 436 (459)
Q Consensus 368 vpVTFtW~g~--AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LP--PG~YEYKFIV--DGe 436 (459)
..++++-..+ ...|.|.=.+++-...++|.+... +.....|++++.++ +|++.|.|.+ +|+
T Consensus 21 ~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 21 LLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4455544432 468888665565444578887521 11234699999885 7888999988 554
No 73
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.68 E-value=1.3e+02 Score=29.46 Aligned_cols=47 Identities=32% Similarity=0.393 Sum_probs=26.6
Q ss_pred HHHHHhcccchhhhHHHHHhhhhH---------HHHHHHHHHHHHHHHHhHHHHHH
Q 012643 291 VEVIARRRENQLEIDHLKFMLHQK---------EMELSRLKEQIEKEKLALSVLQT 337 (459)
Q Consensus 291 ~~~~~~~~~~~~e~~~l~~ml~qk---------ele~~r~k~qie~~K~~La~l~~ 337 (459)
+|++++-+.-+.+.+||+.|+.+. |-++.+...|||.-+.++.+|..
T Consensus 135 ~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 135 VDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666677777777766543 33444455555555555544433
No 74
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.01 E-value=46 Score=34.38 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=33.4
Q ss_pred cCCcchHHHHHhcccchhhhHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 012643 285 DFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLA 331 (459)
Q Consensus 285 ~~d~~~~~~~~~~~~~~~e~~~l~~ml~qkele~~r~k~qie~~K~~ 331 (459)
|.|.++-+|.+-+- ..||++|+-|||||.+++..--.||-+-|+-
T Consensus 217 D~~~~dh~V~i~~l--keeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 217 DRDPGDHMVKIQKL--KEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred CCCCcchHHHHHHH--HHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 66666656666554 4589999999999999988777776655553
No 75
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=25.18 E-value=2.2e+02 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.5
Q ss_pred eEEEEEEecCCceEEE
Q 012643 368 EVVEIQYSGDGEIVEV 383 (459)
Q Consensus 368 vpVTFtW~g~AkeV~L 383 (459)
-+|+|.|...++.|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3688888877776664
No 76
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=25.16 E-value=94 Score=29.98 Aligned_cols=40 Identities=33% Similarity=0.776 Sum_probs=23.1
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEeC-CeeEEEEEE--EC--CEeeeC
Q 012643 388 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI--VD--GQWKVD 440 (459)
Q Consensus 388 NnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LP-PG~YEYKFI--VD--GeW~~D 440 (459)
..|+ .+||... ++..|...+.+. +|.|+|+.. +| +.|.++
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 4686 5899863 688999999875 899999976 55 456543
No 77
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=24.25 E-value=94 Score=29.10 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHhcCCCCCC-CCChHHHHHhc
Q 012643 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (459)
Q Consensus 61 ~~~l~~d~~ef~s~~~lp~~~-vps~kel~~hg 92 (459)
=+.+.++|++-+..=.+|+|. +||.+||.++=
T Consensus 10 y~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~~ 42 (238)
T TIGR02325 10 WRQIADKIEQEIAAGHLRAGDYLPAEMQLAERF 42 (238)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 367889999999888888876 99999999863
No 78
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=22.53 E-value=87 Score=25.94 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHhhhHH
Q 012643 68 LREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (459)
Q Consensus 68 ~~ef~s~~~lp~~~vps~kel~~hgr~dlan~vrrrgyk 106 (459)
++.|..++| .|+.+.|.+-+-.||..++|+.||.
T Consensus 18 ~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 18 YRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 567778888 8999999999999999999999976
No 79
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=22.47 E-value=1.1e+02 Score=28.94 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 012643 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (459)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (459)
..+.++|++-+..=.+++|. +||-+||.++
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 33 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQ 33 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 46788999999988999885 9999999986
No 80
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=22.20 E-value=2.5e+02 Score=21.72 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=26.5
Q ss_pred EEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECC
Q 012643 370 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 435 (459)
Q Consensus 370 VTFtW~g~AkeV~LaGSFNnW~~~IpM~Kd~s~~~~~~~g~k~sGvFsttL~LPPG~YEYKFIVDG 435 (459)
+.+.-.-.+-.|+|-|.+-| .. |+. ...|++|.|.+++.-+|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G-~t--p~~---------------------~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIG-TT--PLT---------------------LKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEEECCCCEEEECCEEec-cC--cce---------------------eeecCCccEEEEEEECC
Confidence 34444445788999888777 21 211 11377888888887777
No 81
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.08 E-value=1.5e+02 Score=32.49 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHH---HHHhHHHHHHHhhhcccchhhccccchH-----HHHHHHhhcCCceEEEEEEecCCceEE
Q 012643 311 LHQKEMELSRLKEQIEK---EKLALSVLQTKAVTEINKAEKLISDKDE-----ELIAAEESLSGLEVVEIQYSGDGEIVE 382 (459)
Q Consensus 311 l~qkele~~r~k~qie~---~K~~La~l~~k~~~ei~eA~kLl~eK~~-----~LdaAe~aLsgLvpVTFtW~g~AkeV~ 382 (459)
.|+.--|+..+++.|.. .|+.+..-......++...++.+..+-+ .+.-...+..+.+|+.+........+.
T Consensus 111 y~~gp~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~l 190 (459)
T KOG0272|consen 111 YHEGPVELRVARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHL 190 (459)
T ss_pred eccCCHHHHHHHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeE
Confidence 34444444444444332 2333433344444566666555554433 233344557777999999888888999
Q ss_pred EEeeeCC
Q 012643 383 VAGSFNG 389 (459)
Q Consensus 383 LaGSFNn 389 (459)
++|+|.|
T Consensus 191 aT~swsG 197 (459)
T KOG0272|consen 191 ATGSWSG 197 (459)
T ss_pred EEeecCC
Confidence 9999987
No 82
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=21.96 E-value=2.1e+02 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=19.9
Q ss_pred CCcEEEEEEeCCeeEEEEEEECCEeeeCCCC
Q 012643 413 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 443 (459)
Q Consensus 413 sGvFsttL~LPPG~YEYKFIVDGeW~~DPdn 443 (459)
.-+|-.. |.|-|.|.|. +|.|+++-+.
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCCC
Confidence 4577766 4687888885 9999987543
No 83
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=21.54 E-value=1.2e+02 Score=26.21 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHH-------hhhcccchhhccccchHHHHHH
Q 012643 313 QKEMELSRLKEQIEKEKLALSVLQTK-------AVTEINKAEKLISDKDEELIAA 360 (459)
Q Consensus 313 qkele~~r~k~qie~~K~~La~l~~k-------~~~ei~eA~kLl~eK~~~LdaA 360 (459)
..+.|..|+...+++++..|.-|..+ ...+|.+||.++.+-+.-.+.+
T Consensus 32 ~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v 86 (123)
T PF05524_consen 32 DIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEV 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHH
Confidence 33444444444444444444444333 3447888888876654433333
No 84
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.12 E-value=87 Score=35.30 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=23.0
Q ss_pred eCCeeEEEEEEECCEee---eCCCCCeecc
Q 012643 422 LYPGTYEIKFIVDGQWK---VDPQRESVTK 448 (459)
Q Consensus 422 LPPG~YEYKFIVDGeW~---~DPdnPtvtD 448 (459)
-+.|.|+|||-++|+|. +|...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 46799999999999995 5888898774
No 85
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.90 E-value=2.1e+02 Score=30.05 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=18.3
Q ss_pred cchhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 012643 299 ENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ 336 (459)
Q Consensus 299 ~~~~e~~~l~~ml~qkele~~r~k~qie~~K~~La~l~ 336 (459)
.-++=|.|||.-|.--+-++-.--.+|++-|.+|+-||
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555666665554433333333334444444455554
No 86
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.61 E-value=95 Score=23.39 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=13.6
Q ss_pred EEEeCCeeEEEEEEE---CCEeeeCC
Q 012643 419 VLWLYPGTYEIKFIV---DGQWKVDP 441 (459)
Q Consensus 419 tL~LPPG~YEYKFIV---DGeW~~DP 441 (459)
-..||||.|.++-.+ +|.|..++
T Consensus 33 ~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 33 YTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEeCCCEEEEEEEEEECCCCCcCccc
Confidence 348999999988775 47787664
No 87
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=20.43 E-value=3.7e+02 Score=24.24 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=18.2
Q ss_pred EeCCeeEEEEEEEC---CEeeeCCCCC
Q 012643 421 WLYPGTYEIKFIVD---GQWKVDPQRE 444 (459)
Q Consensus 421 ~LPPG~YEYKFIVD---GeW~~DPdnP 444 (459)
.|+||.|.++-.+- +.|....+.-
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~ 128 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFT 128 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEE
Confidence 68899999998884 4688765443
No 88
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=20.28 E-value=1.9e+02 Score=27.00 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHhchh
Q 012643 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (459)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~hgr~ 94 (459)
+.+.++|++-+..-++++|. +||.+||.+.=.+
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~~V 37 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERFNT 37 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCC
Confidence 46788999999999998885 9999999987444
No 89
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=20.14 E-value=1.3e+02 Score=28.38 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 012643 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (459)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (459)
+++.++|++-+..=.+++|. +||-+||.+.
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~LPsE~eLa~~ 34 (230)
T TIGR02018 4 QRIKQDILERIRSGEWPPGHRIPSEHELVAQ 34 (230)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH
Confidence 46788999999988898886 9999999875
Done!