BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012645
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 237/481 (49%), Gaps = 46/481 (9%)
Query: 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA----------TTVG 56
+ HV+++ YP QGHINPL + AK L + T T Y K + T
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFN 67
Query: 57 VEPISDGFD--EGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSES--PVNCIVYDSL 112
E I DG EG + V +S + + E++ + S + PV C+V D
Sbjct: 68 FESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCC 127
Query: 113 LTWALDVARQFGIYGAAMMTNSASVCS----MYWQ--INHGLLTLPVNQETVPLT----- 161
+++ + A +F + ++SA CS M+++ + G++ P E+ LT
Sbjct: 128 MSFTIQAAEEFELPNVLYFSSSA--CSLLNVMHFRSFVERGII--PFKDESY-LTNGCLE 182
Query: 162 -----LPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELL 216
+PGL + D+ F+ N L +E +NK+ +L N+F ELE +++
Sbjct: 183 TKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVI 242
Query: 217 RAMLGLWPLVM-IGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVS 275
A+ P + IGPL QI + +N+W+ +C+ WL +K SV+YV+
Sbjct: 243 NALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWK-EDTECLDWLESKEPGSVVYVN 301
Query: 276 FGSMADIAANQVDEIARGLKASEKPFLWVVKEN-----ENKLPVEFVNSVGETGLVVRWC 330
FGS + Q+ E A GL +K FLW+++ + EF N + + GL+ WC
Sbjct: 302 FGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWC 361
Query: 331 NQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAK 390
Q +VL H ++G F+THCGWNS E + GV ++ P F+DQPT+ +F+ WE+G+
Sbjct: 362 PQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID 421
Query: 391 KNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRL 450
N V EEL K +NEV+ G++ +K+K+ + ++ A++ GG S N+++ + +
Sbjct: 422 TN----VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
Query: 451 L 451
L
Sbjct: 478 L 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 226/473 (47%), Gaps = 52/473 (10%)
Query: 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLA--TTHYTVKSI-----HAT 53
M HV VL +P H PLL +RLA+ A + +T + SI H
Sbjct: 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTM 60
Query: 54 TVGVEP--ISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAE-VILKYKDSESPVNCIVYD 110
++ ISDG EG + A + +E F + + +++ ++ PV+C+V D
Sbjct: 61 QCNIKSYDISDGVPEG-YVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVAD 119
Query: 111 SLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINH-----GLLTLPVNQETVPLTLPGL 165
+ + +A D+A + G+ T + S + I+ G+ + ++ + +PG+
Sbjct: 120 AFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGM 179
Query: 166 PSLASSDLPSFLAQPASNPAYLAAILEQFGS-LNKNDWVLCNSFEELEKEL-------LR 217
+ DL + N + + +L + G L K V NSFEEL+ L L+
Sbjct: 180 SKVRFRDLQEGIVFGNLN-SLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLK 238
Query: 218 AMLGLWPLVMIGP--LVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVS 275
L + P +I P +VP+ TG C++WL + SV+Y+S
Sbjct: 239 TYLNIGPFNLITPPPVVPNT-------------------TG--CLQWLKERKPTSVVYIS 277
Query: 276 FGSMADIAANQVDEIARGLKASEKPFLWVVKENEN-KLPVEFVNSVGETGLVVRWCNQFE 334
FG++ +V ++ L+AS PF+W +++ LP F+ G+VV W Q E
Sbjct: 278 FGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAE 337
Query: 335 VLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRA 394
VLAH+AVG F+THCGWNS+ E ++ GV ++ P F DQ N + VE+V E+GVR +
Sbjct: 338 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE---G 394
Query: 395 GIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFV 447
G+ T L C ++++ E+ +K++ N+ RE A +AV GSS +N V
Sbjct: 395 GVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/485 (27%), Positives = 217/485 (44%), Gaps = 82/485 (16%)
Query: 9 HVLVLTYPAQGHINPLLQFAKRLA-----------------SKRVKATLATTHYTVKSIH 51
HV ++ P GH+ PL++FAKRL SK + L + ++ S+
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVF 67
Query: 52 ATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDS 111
V + +S + +++ + T + L +V + + +V D
Sbjct: 68 LPPVDLTDLS---------SSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDL 118
Query: 112 LLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETV---------PLTL 162
T A DVA +F + +A+V S + L LP ETV PL L
Sbjct: 119 FGTDAFDVAVEFHVPPYIFYPTTANVLSFF-------LHLPKLDETVSCEFRELTEPLML 171
Query: 163 PGLPSLASSDLPSFL--AQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAM- 219
PG +A D FL AQ + AY +L + + +L N+F ELE ++A+
Sbjct: 172 PGCVPVAGKD---FLDPAQDRKDDAY-KWLLHNTKRYKEAEGILVNTFFELEPNAIKALQ 227
Query: 220 ---LGLWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSF 276
L P+ +GPLV + + +S +C++WL +P SV+YVSF
Sbjct: 228 EPGLDKPPVYPVGPLVNIGKQEAKQTEES------------ECLKWLDNQPLGSVLYVSF 275
Query: 277 GSMADIAANQVDEIARGLKASEKPFLWVVKENE-----------------NKLPVEFVNS 319
GS + Q++E+A GL SE+ FLWV++ LP F+
Sbjct: 276 GSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER 335
Query: 320 VGETGLVVR-WCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKF 378
+ G V+ W Q +VLAH + G F+THCGWNS LE + G+ ++A P +++Q NA
Sbjct: 336 TKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVL 395
Query: 379 VEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGS 438
+ E +R + G+V EE+ + V +M+GE + ++ + + +E A + + G+
Sbjct: 396 LSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGT 455
Query: 439 SDKNI 443
S K +
Sbjct: 456 STKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/466 (27%), Positives = 204/466 (43%), Gaps = 62/466 (13%)
Query: 3 NQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLAT--------THYTVKSIHATT 54
N +HV VL +P H PLL K++A++ K T + T ++ +
Sbjct: 9 NGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPN 68
Query: 55 VGVEPISDGFDEG----GFKQAP---SVKAYLESFKTVGSRTLAEVILKYKDSESPVNCI 107
+ + DG +G G + P +KA E+FK V +AE + + C+
Sbjct: 69 IKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAE-------TGKNITCL 121
Query: 108 VYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLT-----L 162
V D+ + D+A + + T A S+ + L+ + V L
Sbjct: 122 VTDAFFWFGADLAEEMHAKWVPLWT--AGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVL 179
Query: 163 PGLPSLASSDLPSFLAQPASNPAYLAAILEQFG-SLNKNDWVLCNSFEEL----EKEL-- 215
PG P L +SDLP + + P A +L + G L + + V NSF + E EL
Sbjct: 180 PGFPELKASDLPEGVIKDIDVP--FATMLHKMGLELPRANAVAINSFATIHPLIENELNS 237
Query: 216 -LRAMLGLWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYV 274
+ +L + P + P Q+ D C+ WL SV+Y+
Sbjct: 238 KFKLLLNVGPFNLTTP--------QRKVSDE-----------HGCLEWLDQHENSSVVYI 278
Query: 275 SFGSMADIAANQVDEIARGLKASEKPFLWVVK-ENENKLPVEFVNSVGETGLVVRWCNQF 333
SFGS+ +++ +A L+ PF+W + + + KLP F+ G +V W Q
Sbjct: 279 SFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQV 338
Query: 334 EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNR 393
E+L H +VG F+TH GWNS+LE + GV +++ P F DQ N E V E+GV
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDN-- 396
Query: 394 AGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSS 439
G++T E + K + M E+ +++ + K +E A KAV G+S
Sbjct: 397 -GVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTS 441
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/476 (25%), Positives = 214/476 (44%), Gaps = 65/476 (13%)
Query: 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK--------SIHA 52
M + + ++ + P GH+ L+FAK L + L T + +K S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNH--DKNLYITVFCIKFPGMPFADSYIK 60
Query: 53 TTVGVEPISDGFDEGGFKQAPS---------VKAYLESFKTVGSRTLAEVILKYKDSESP 103
+ + +P D + P + +LES T+ ++ +
Sbjct: 61 SVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL------SNK 114
Query: 104 VNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLP 163
V +V D +DV +FGI +T++ S+ + + + + L
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL 174
Query: 164 GLPSLASSDLPSFLAQPA---SNPAYLA--AILEQFGSLNKNDWVLCNSFEELEKELLRA 218
+P + S+ +PS + A + Y+A + E+F ++ N+F +LE+ + A
Sbjct: 175 NIPGI-SNQVPSNVLPDACFNKDGGYIAYYKLAERF---RDTKGIIVNTFSDLEQSSIDA 230
Query: 219 MLG----LWPLVMIGPLV-----PSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEK 269
+ + P+ +GPL+ P+ LDQ D ++WL +P+K
Sbjct: 231 LYDHDEKIPPIYAVGPLLDLKGQPNPKLDQA--------------QHDLILKWLDEQPDK 276
Query: 270 SVIYVSFGSMA-DIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVN--SVGETGLV 326
SV+++ FGSM +Q+ EIA GLK S FLW + P F+ + G++
Sbjct: 277 SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMI 336
Query: 327 VRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVG 386
W Q EVLAH+A+G F++HCGWNSILE + GV ++ P +++Q NA + + W VG
Sbjct: 337 CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Query: 387 VRAK---KNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSS 439
+ + + + +V EE+ K + ++MD + + + V + +E ++ AV GGSS
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 120/476 (25%), Positives = 214/476 (44%), Gaps = 65/476 (13%)
Query: 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK--------SIHA 52
M + + ++ + P GH+ L+FAK L + L T + +K S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNH--DKNLYITVFCIKFPGMPFADSYIK 60
Query: 53 TTVGVEPISDGFDEGGFKQAPS---------VKAYLESFKTVGSRTLAEVILKYKDSESP 103
+ + +P D + P + +LES T+ ++ +
Sbjct: 61 SVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL------SNK 114
Query: 104 VNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLP 163
V +V D +DV +FGI +T++ S+ + + + + L
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL 174
Query: 164 GLPSLASSDLPSFLAQPA---SNPAYLA--AILEQFGSLNKNDWVLCNSFEELEKELLRA 218
+P + S+ +PS + A + Y+A + E+F ++ N+F +LE+ + A
Sbjct: 175 NIPGI-SNQVPSNVLPDACFNKDGGYIAYYKLAERF---RDTKGIIVNTFSDLEQSSIDA 230
Query: 219 MLG----LWPLVMIGPLV-----PSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEK 269
+ + P+ +GPL+ P+ LDQ D ++WL +P+K
Sbjct: 231 LYDHDEKIPPIYAVGPLLDLKGQPNPKLDQA--------------QHDLILKWLDEQPDK 276
Query: 270 SVIYVSFGSMA-DIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVN--SVGETGLV 326
SV+++ FGSM +Q+ EIA GLK S FLW + P F+ + G++
Sbjct: 277 SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMI 336
Query: 327 VRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVG 386
W Q EVLAH+A+G F++HCGWNSILE + GV ++ P +++Q NA + + W VG
Sbjct: 337 CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Query: 387 VRAK---KNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSS 439
+ + + + +V EE+ K + ++MD + + + V + +E ++ AV GGSS
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 249 ANIWEPTGDQCMRWLATKPEKSVIYVSFGS-MADIAANQVDEIARGLKASEKPFLWVVKE 307
+N +P + ++ + E V+ S GS +++ + + IA L + LW
Sbjct: 1 SNAAKPLPKEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDG 60
Query: 308 NENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVP 367
N+ +++G + +W Q ++L H FITH G N I E + G+ V +P
Sbjct: 61 NK-------PDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIP 113
Query: 368 QFSDQPTN 375
F+DQP N
Sbjct: 114 LFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 326 VVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEV 385
V +W Q ++L + FITH G S +E LS V +VAVPQ ++Q NA E + E+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA---ERIVEL 363
Query: 386 GVRAKKNRAGIVTGEELNKCV 406
G+ R VT E+L + V
Sbjct: 364 GLGRHIPR-DQVTAEKLREAV 383
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 329 WCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVE 380
W Q +L + F+TH G EGL+ ++AVPQ DQ NA ++
Sbjct: 290 WVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ 339
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPI 60
M Q H+ + + A GH+NP L+ + L ++ + T A + AT G P+
Sbjct: 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAAT--GPRPV 58
Query: 61 -----SDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTW 115
G D ++ +E F + L ++ Y D + +++D
Sbjct: 59 LYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIP--DLVLHDITSYP 116
Query: 116 ALDVARQFGIYGAAMMTN 133
A +AR++G+ ++ N
Sbjct: 117 ARVLARRWGVPAVSLSPN 134
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 262 WLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFL---W-VVKENENKLPVEFV 317
W +P+ V+ VS G NQ +E +A + F W VV L +
Sbjct: 224 WQPPRPDAPVLLVSLG-------NQFNEHPEFFRACAQAFADTPWHVVXAIGGFLDPAVL 276
Query: 318 NSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAK 377
+ +W VLAH A C +TH ++LE + GV +V VP F+ + A
Sbjct: 277 GPLPPNVEAHQWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATE--AAP 332
Query: 378 FVEEVWEVGV 387
E V E+G+
Sbjct: 333 SAERVIELGL 342
>pdb|2O2C|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2C|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From T.
Brucei Containing Glucose-6-Phosphate In The Active Site
pdb|2O2D|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
pdb|2O2D|C Chain C, Crystal Structure Of Phosphoglucose Isomerase From
Trypanosoma Brucei Complexed With Citrate
Length = 613
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 369 FSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREF 428
F + N V + +R + NR V G+++ VN+V+D RS K +W+
Sbjct: 133 FRGERVNTTENRPVLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGH 192
Query: 429 AKKAV 433
KA+
Sbjct: 193 TGKAI 197
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 328 RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEV 382
RW +VL QA C +TH G ++ E L G +V VPQ D A+ V+++
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 328 RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEV 382
RW +VL QA C +TH G ++ E L G +V VPQ D A+ V+++
Sbjct: 303 RWVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 240 QIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEK 299
Q D YG W + R +++YV A++ +N D++ R L +SE+
Sbjct: 402 QFPSDEEYG--FWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEE 459
Query: 300 PFLW 303
P+ W
Sbjct: 460 PYSW 463
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
Length = 963
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 240 QIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEK 299
Q D YG W + R ++ YV A++ +N D++ R L +SE+
Sbjct: 402 QFPSDEEYG--FWSSDEKEQFRIYRVDISDTLXYVYEXLGAELLSNLYDKLGRLLTSSEE 459
Query: 300 PFLW 303
P+ W
Sbjct: 460 PYSW 463
>pdb|1Q50|A Chain A, Phosphoglucose Isomerase From Leishmania Mexicana
Length = 561
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 360 GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIK 419
GV A F Q N+ V V +R + NR IV G+++ VN V+ + +
Sbjct: 80 GVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTER 139
Query: 420 RNVSKWREFAKKAV 433
+W+ K++
Sbjct: 140 VRSGEWKGQTGKSI 153
>pdb|1T10|A Chain A, Phosphoglucose Isomerase From Leishmania Mexicana In
Complex With Substrate D-Fructose-6-Phosphate
Length = 605
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 360 GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIK 419
GV A F Q N+ V V +R + NR IV G+++ VN V+ + +
Sbjct: 123 GVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTER 182
Query: 420 RNVSKWREFAKKAV 433
+W+ K++
Sbjct: 183 VRSGEWKGQTGKSI 196
>pdb|1N8T|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
pdb|1N8T|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Rabbit Muscle
Length = 557
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 358 SLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQK 417
S GV F+ + N+ V V +R + N +V G+++ VN+V+D ++
Sbjct: 73 SRGVEAARESMFNGEKINSTEDRAVLHVALRNRSNTPIVVDGKDVMPEVNKVLDKMKAFC 132
Query: 418 IKRNVSKWREFAKKAVS 434
+ W+ + K ++
Sbjct: 133 QRVRSGDWKGYTGKTIT 149
>pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
Glycolytic Enzyme That Moonlights As Neuroleukin,
Autocrine Motility Factor, And Differentiation Mediator
pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
Length = 557
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 358 SLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQK 417
S GV F+ + N+ V V +R + N +V G+++ VN+V+D ++
Sbjct: 73 SRGVEAARESMFNGEKINSTEDRAVLHVALRNRSNTPIVVDGKDVMPEVNKVLDKMKAFC 132
Query: 418 IKRNVSKWREFAKKAVS 434
+ W+ + K ++
Sbjct: 133 QRVRSGDWKGYTGKTIT 149
>pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
Isomerase Complexed With 5-Phosphoarabinonate, A
Transition State Analogue
pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Fructose-6-Phosphate
pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose
6-Phosphate Isomerase (No Ligand Bound)
pdb|1XTB|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
pdb|1XTB|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
Complexed With Sorbitol-6-Phosphate
Length = 558
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 358 SLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQK 417
S GV F+ + N+ V V +R + N +V G+++ VN+V+D ++
Sbjct: 74 SRGVEAARESMFNGEKINSTEDRAVLHVALRNRSNTPIVVDGKDVMPEVNKVLDKMKAFC 133
Query: 418 IKRNVSKWREFAKKAVS 434
+ W+ + K ++
Sbjct: 134 QRVRSGDWKGYTGKTIT 150
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 347 HCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVR----AKKNRAGIVTGEEL 402
HCGW +++ G++ G + +P+ + + K+ +E+ EV R ++N IV L
Sbjct: 201 HCGWLALMAGIATGADYIFIPERA--VPHGKWQDELKEVCQRHRSKGRRNNTIIVAEGAL 258
Query: 403 NKCVNEV 409
+ +N V
Sbjct: 259 DDQLNPV 265
>pdb|2OGT|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.8
Length = 498
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 213 KELLRAMLGLWPLVMIGPLVPSAYLDQQIAGDSAYGA 249
+ELLRA L L P VM GP+V L + YGA
Sbjct: 260 EELLRAALSLGPGVMYGPVVDGRVLRRHPIEALRYGA 296
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 347 HCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKK 391
HCGW ++ G++ G + +P+ P+ + + +++ +V +R ++
Sbjct: 406 HCGWLGLMSGIATGADYIFIPE--RPPSESNWKDDLKKVCLRHRE 448
>pdb|2OGS|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.2
Length = 498
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 213 KELLRAMLGLWPLVMIGPLVPSAYLDQQIAGDSAYGA 249
+ELLRA L L P VM GP+V L + YGA
Sbjct: 260 EELLRAALSLGPGVMYGPVVDGRVLRRHPIEALRYGA 296
>pdb|1P6G|Q Chain Q, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P87|Q Chain Q, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|Q Chain Q, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|Q Chain Q, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|Q Chain Q, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|Q Chain Q, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|Q Chain Q, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|Q Chain Q, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|T Chain T, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|T Chain T, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|T Chain T, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|T Chain T, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|T Chain T, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|S Chain S, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 83
Score = 28.1 bits (61), Expect = 9.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 363 VVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKC 405
VVA+ +F P KF++ ++ V + N GI E+ +C
Sbjct: 21 VVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIREC 63
>pdb|1VS5|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1A|J Chain J, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|J Chain J, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|Q Chain Q, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|Q Chain Q, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|Q Chain Q, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|Q Chain Q, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|Q Chain Q, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|Q Chain Q, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|Q Chain Q, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|Q Chain Q, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|Q Chain Q, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|U Chain U, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|U Chain U, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|Q Chain Q, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|Q Chain Q, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|Q Chain Q, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|Q Chain Q, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 84
Score = 28.1 bits (61), Expect = 9.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 363 VVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKC 405
VVA+ +F P KF++ ++ V + N GI E+ +C
Sbjct: 22 VVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIREC 64
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 390 KKNRAGIVTGEELNKCVNEV--MDGERSQKIKRNVSK 424
+K + ++ GE+LN + + DGE QK+K N+ K
Sbjct: 183 EKKASKVIEGEDLNILIGSIPLKDGEEKQKVKHNIMK 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,814,402
Number of Sequences: 62578
Number of extensions: 576567
Number of successful extensions: 1443
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 36
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)