Query 012645
Match_columns 459
No_of_seqs 133 out of 1540
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 1.3E-65 2.9E-70 504.1 48.2 448 1-455 1-472 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 2.9E-65 6.2E-70 497.7 47.2 437 6-451 4-447 (449)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.3E-64 7.1E-69 492.7 47.4 432 1-451 1-449 (451)
4 PLN02562 UDP-glycosyltransfera 100.0 5.9E-63 1.3E-67 485.4 46.1 428 1-450 1-447 (448)
5 PLN02210 UDP-glucosyl transfer 100.0 8.5E-63 1.9E-67 484.7 46.5 437 5-451 6-454 (456)
6 PLN02152 indole-3-acetate beta 100.0 2.3E-62 5.1E-67 478.1 45.2 432 5-450 1-454 (455)
7 PLN02207 UDP-glycosyltransfera 100.0 4.6E-62 1E-66 476.9 45.6 434 5-452 1-465 (468)
8 PLN02554 UDP-glycosyltransfera 100.0 3.5E-62 7.5E-67 485.4 44.7 427 7-453 2-479 (481)
9 PLN02992 coniferyl-alcohol glu 100.0 1.6E-61 3.6E-66 473.8 45.9 421 6-452 4-469 (481)
10 PLN02448 UDP-glycosyltransfera 100.0 2E-61 4.3E-66 478.3 46.4 434 4-453 7-458 (459)
11 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.5E-61 5.5E-66 475.6 46.0 438 5-453 7-472 (477)
12 PLN00164 glucosyltransferase; 100.0 9.2E-61 2E-65 473.2 46.1 431 5-455 1-476 (480)
13 PLN03015 UDP-glucosyl transfer 100.0 1.4E-60 3.1E-65 464.4 45.7 426 5-450 1-466 (470)
14 PLN03004 UDP-glycosyltransfera 100.0 1.1E-60 2.3E-65 465.9 43.1 420 5-441 1-450 (451)
15 PLN02670 transferase, transfer 100.0 3.3E-60 7.2E-65 464.3 43.6 434 6-458 5-471 (472)
16 PLN02764 glycosyltransferase f 100.0 6.8E-60 1.5E-64 458.4 44.6 418 6-457 4-450 (453)
17 PLN02167 UDP-glycosyltransfera 100.0 6.1E-60 1.3E-64 468.6 44.9 434 5-454 1-474 (475)
18 PLN03007 UDP-glucosyltransfera 100.0 4.8E-60 1E-64 470.7 44.1 435 6-452 4-480 (482)
19 PLN02534 UDP-glycosyltransfera 100.0 2.4E-59 5.3E-64 460.4 45.3 435 6-453 7-487 (491)
20 PLN02208 glycosyltransferase f 100.0 1.4E-59 3E-64 459.0 42.9 408 7-452 4-439 (442)
21 PLN00414 glycosyltransferase f 100.0 2.8E-58 6E-63 450.3 42.9 412 7-457 4-445 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.7E-46 5.8E-51 372.7 35.1 402 7-454 20-468 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 6.3E-45 1.4E-49 357.8 31.1 372 13-451 1-390 (392)
24 cd03784 GT1_Gtf_like This fami 100.0 1.2E-44 2.7E-49 357.4 24.9 375 8-448 1-399 (401)
25 PF00201 UDPGT: UDP-glucoronos 100.0 4.6E-46 1E-50 377.5 14.2 408 9-453 2-444 (500)
26 COG1819 Glycosyl transferases, 100.0 3E-43 6.5E-48 341.7 22.2 396 7-454 1-402 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.3E-39 2.9E-44 330.3 17.9 389 7-431 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 7.5E-27 1.6E-31 224.2 28.9 319 9-424 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 100.0 1.8E-26 3.9E-31 220.7 24.5 306 8-409 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 6.6E-24 1.4E-28 202.5 24.1 309 9-413 1-315 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 9.4E-23 2E-27 193.4 28.9 309 8-413 1-325 (357)
32 PRK00726 murG undecaprenyldiph 99.9 1.7E-19 3.7E-24 175.3 29.3 320 8-426 2-335 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.5E-18 5.5E-23 166.7 28.4 310 9-413 1-325 (350)
34 COG4671 Predicted glycosyl tra 99.8 4.5E-18 9.7E-23 153.6 21.1 333 6-413 8-366 (400)
35 TIGR01133 murG undecaprenyldip 99.8 1.6E-16 3.5E-21 153.9 27.4 306 8-413 1-322 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.8 4E-16 8.7E-21 152.1 25.1 346 8-448 6-384 (385)
37 TIGR03590 PseG pseudaminic aci 99.7 9.6E-16 2.1E-20 142.6 20.7 260 9-378 1-278 (279)
38 PRK13609 diacylglycerol glucos 99.7 2.9E-14 6.4E-19 139.8 26.2 133 268-413 201-339 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.6 1.5E-13 3.2E-18 134.9 23.8 311 8-413 2-342 (380)
40 PRK13608 diacylglycerol glucos 99.6 4E-13 8.6E-18 131.9 23.7 134 267-413 200-339 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 3.3E-16 7.1E-21 134.8 -1.2 136 271-413 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.5 1.4E-11 3E-16 120.8 24.9 141 259-413 196-349 (382)
43 PF03033 Glyco_transf_28: Glyc 99.5 5.3E-14 1.2E-18 117.2 6.3 122 10-134 1-131 (139)
44 TIGR03492 conserved hypothetic 99.4 1.2E-10 2.6E-15 113.8 25.4 318 22-413 11-365 (396)
45 cd03814 GT1_like_2 This family 99.4 1.1E-09 2.4E-14 106.1 31.5 316 9-413 1-333 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 1.8E-09 3.9E-14 108.7 33.4 336 5-425 56-414 (465)
47 cd03823 GT1_ExpE7_like This fa 99.3 3.4E-09 7.3E-14 102.5 30.4 131 268-413 189-330 (359)
48 cd03794 GT1_wbuB_like This fam 99.3 1.7E-09 3.6E-14 105.7 28.5 331 9-413 1-366 (394)
49 cd03800 GT1_Sucrose_synthase T 99.3 1.8E-08 3.9E-13 99.3 31.6 323 17-413 20-369 (398)
50 cd03808 GT1_cap1E_like This fa 99.3 3.4E-08 7.4E-13 95.1 32.9 316 9-413 1-330 (359)
51 cd03817 GT1_UGDG_like This fam 99.3 2.5E-08 5.5E-13 96.8 31.9 144 269-428 201-360 (374)
52 COG3980 spsG Spore coat polysa 99.3 1.6E-09 3.4E-14 95.9 20.3 145 269-427 158-305 (318)
53 cd03801 GT1_YqgM_like This fam 99.3 3E-08 6.5E-13 95.7 31.8 316 9-413 1-342 (374)
54 cd04962 GT1_like_5 This family 99.2 1.3E-08 2.7E-13 99.5 28.9 142 270-425 197-350 (371)
55 PRK10307 putative glycosyl tra 99.2 6.2E-08 1.3E-12 96.2 32.8 160 270-451 229-406 (412)
56 cd03818 GT1_ExpC_like This fam 99.2 8.4E-08 1.8E-12 94.7 33.3 81 321-413 280-367 (396)
57 cd03816 GT1_ALG1_like This fam 99.2 5.5E-08 1.2E-12 96.4 31.3 341 6-426 2-399 (415)
58 cd03825 GT1_wcfI_like This fam 99.2 3.9E-08 8.5E-13 95.6 29.4 82 320-413 242-331 (365)
59 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 2.5E-09 5.4E-14 104.2 19.0 131 268-413 197-338 (363)
60 cd03820 GT1_amsD_like This fam 99.1 1.4E-07 3.1E-12 90.3 30.1 81 321-413 234-320 (348)
61 cd03805 GT1_ALG2_like This fam 99.1 4.2E-07 9.1E-12 89.5 31.3 92 320-424 278-377 (392)
62 cd03798 GT1_wlbH_like This fam 99.1 4.6E-07 9.9E-12 87.7 30.9 132 269-413 201-345 (377)
63 TIGR03449 mycothiol_MshA UDP-N 99.1 5.1E-07 1.1E-11 89.4 31.5 335 17-424 19-381 (405)
64 TIGR00236 wecB UDP-N-acetylglu 99.1 1.7E-08 3.8E-13 98.4 20.6 135 270-423 198-342 (365)
65 cd03795 GT1_like_4 This family 99.1 1.7E-07 3.6E-12 90.9 26.8 132 270-413 191-333 (357)
66 TIGR02468 sucrsPsyn_pln sucros 99.0 2.5E-06 5.4E-11 90.8 35.2 379 5-425 167-651 (1050)
67 cd03796 GT1_PIG-A_like This fa 99.0 1.2E-06 2.7E-11 86.4 31.6 131 269-413 192-334 (398)
68 cd03821 GT1_Bme6_like This fam 99.0 1.7E-06 3.7E-11 83.9 31.0 80 320-413 260-346 (375)
69 PRK05749 3-deoxy-D-manno-octul 99.0 5.5E-07 1.2E-11 89.7 28.0 81 323-413 303-389 (425)
70 cd03811 GT1_WabH_like This fam 99.0 2E-07 4.4E-12 89.4 23.9 131 268-413 187-333 (353)
71 PF04007 DUF354: Protein of un 99.0 1.2E-06 2.6E-11 82.7 27.5 299 8-410 1-308 (335)
72 cd03819 GT1_WavL_like This fam 99.0 1.2E-06 2.5E-11 84.9 28.3 318 16-427 8-347 (355)
73 cd03799 GT1_amsK_like This is 99.0 1.5E-06 3.2E-11 84.1 28.9 133 269-413 178-328 (355)
74 cd03802 GT1_AviGT4_like This f 98.9 3.1E-07 6.8E-12 88.2 23.2 129 271-413 172-309 (335)
75 PRK14089 ipid-A-disaccharide s 98.9 1.7E-07 3.8E-12 89.2 20.6 156 270-446 168-344 (347)
76 cd05844 GT1_like_7 Glycosyltra 98.9 2.7E-06 5.8E-11 82.9 27.8 82 320-413 243-337 (367)
77 PRK09922 UDP-D-galactose:(gluc 98.9 1.1E-06 2.4E-11 85.5 24.2 133 270-414 180-326 (359)
78 cd03822 GT1_ecORF704_like This 98.9 4.2E-06 9E-11 81.1 28.3 81 320-413 245-335 (366)
79 cd03812 GT1_CapH_like This fam 98.8 6.4E-06 1.4E-10 79.8 28.2 133 268-413 190-332 (358)
80 TIGR02472 sucr_P_syn_N sucrose 98.8 1.7E-05 3.8E-10 79.3 31.6 84 320-413 315-407 (439)
81 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 2E-06 4.2E-11 83.5 22.9 314 8-411 1-338 (365)
82 cd04951 GT1_WbdM_like This fam 98.8 5.6E-06 1.2E-10 80.3 25.8 125 269-412 187-326 (360)
83 cd03807 GT1_WbnK_like This fam 98.8 2.6E-05 5.7E-10 75.2 30.5 129 269-413 192-333 (365)
84 TIGR02149 glgA_Coryne glycogen 98.8 3E-05 6.5E-10 76.2 30.8 132 270-413 201-353 (388)
85 TIGR03088 stp2 sugar transfera 98.7 2.5E-05 5.4E-10 76.4 27.5 81 321-413 254-339 (374)
86 cd03809 GT1_mtfB_like This fam 98.7 8.7E-06 1.9E-10 78.8 24.0 135 271-423 196-344 (365)
87 PRK01021 lpxB lipid-A-disaccha 98.7 2.3E-05 5.1E-10 78.6 26.6 183 223-429 381-589 (608)
88 TIGR02470 sucr_synth sucrose s 98.6 0.00028 6.1E-09 73.8 33.7 80 321-410 618-707 (784)
89 cd04955 GT1_like_6 This family 98.6 9.7E-05 2.1E-09 71.6 28.8 124 272-413 195-331 (363)
90 PF02684 LpxB: Lipid-A-disacch 98.6 2.3E-05 5E-10 75.2 23.5 192 223-442 153-367 (373)
91 PRK15427 colanic acid biosynth 98.6 0.00011 2.3E-09 72.7 28.2 82 320-413 277-372 (406)
92 TIGR03087 stp1 sugar transfera 98.5 2.5E-05 5.4E-10 77.1 22.9 90 321-424 279-375 (397)
93 PRK15179 Vi polysaccharide bio 98.5 0.00045 9.7E-09 72.1 32.7 97 320-426 572-674 (694)
94 PLN02275 transferase, transfer 98.5 0.00011 2.4E-09 71.8 26.6 121 8-132 5-134 (371)
95 PF02350 Epimerase_2: UDP-N-ac 98.5 1.7E-06 3.8E-11 83.0 13.2 305 29-423 1-326 (346)
96 PRK00654 glgA glycogen synthas 98.5 0.00014 3E-09 73.3 27.3 134 269-411 281-427 (466)
97 COG0381 WecB UDP-N-acetylgluco 98.5 2.3E-05 4.9E-10 73.9 19.1 334 5-426 1-352 (383)
98 cd03804 GT1_wbaZ_like This fam 98.5 8.1E-06 1.7E-10 79.1 17.0 127 272-413 197-327 (351)
99 PLN00142 sucrose synthase 98.4 8.5E-05 1.8E-09 77.7 24.5 81 321-413 641-737 (815)
100 KOG3349 Predicted glycosyltran 98.4 9.3E-07 2E-11 70.7 7.3 120 270-392 4-135 (170)
101 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.00087 1.9E-08 64.0 26.3 316 10-427 51-402 (419)
102 TIGR02095 glgA glycogen/starch 98.3 0.00092 2E-08 67.6 27.9 134 269-411 290-436 (473)
103 PLN02846 digalactosyldiacylgly 98.3 0.00036 7.9E-09 69.1 23.2 72 327-413 289-364 (462)
104 cd03791 GT1_Glycogen_synthase_ 98.2 0.0013 2.8E-08 66.7 27.4 135 269-412 295-442 (476)
105 cd03792 GT1_Trehalose_phosphor 98.2 0.001 2.3E-08 65.0 25.8 130 270-413 190-338 (372)
106 COG0763 LpxB Lipid A disacchar 98.2 0.0006 1.3E-08 64.3 21.1 199 224-450 157-379 (381)
107 PLN02949 transferase, transfer 98.1 0.0034 7.4E-08 62.9 27.7 95 320-427 333-439 (463)
108 PLN02316 synthase/transferase 98.1 0.0077 1.7E-07 65.1 31.1 132 271-412 841-998 (1036)
109 TIGR02918 accessory Sec system 98.1 0.00091 2E-08 67.7 21.9 150 271-430 320-485 (500)
110 cd04950 GT1_like_1 Glycosyltra 98.0 0.0072 1.6E-07 59.1 27.3 125 271-413 206-341 (373)
111 COG1817 Uncharacterized protei 98.0 0.0083 1.8E-07 54.8 24.6 111 8-134 1-114 (346)
112 cd03813 GT1_like_3 This family 98.0 0.0021 4.5E-08 65.1 23.3 82 321-413 353-443 (475)
113 cd04949 GT1_gtfA_like This fam 98.0 0.0016 3.5E-08 63.6 21.4 101 320-429 259-363 (372)
114 cd03806 GT1_ALG11_like This fa 97.9 0.017 3.6E-07 57.4 27.6 80 320-413 303-393 (419)
115 COG5017 Uncharacterized conser 97.8 0.00023 4.9E-09 56.2 9.9 109 272-391 2-123 (161)
116 PF13844 Glyco_transf_41: Glyc 97.8 0.00049 1.1E-08 67.6 13.7 138 267-413 282-431 (468)
117 PF00534 Glycos_transf_1: Glyc 97.7 0.0005 1.1E-08 59.0 11.1 134 267-413 12-159 (172)
118 cd04946 GT1_AmsK_like This fam 97.6 0.0017 3.6E-08 64.4 14.9 133 269-413 229-378 (407)
119 cd01635 Glycosyltransferase_GT 97.6 0.0089 1.9E-07 53.3 18.5 71 17-134 12-85 (229)
120 PRK15484 lipopolysaccharide 1, 97.5 0.0061 1.3E-07 59.8 17.5 83 320-413 255-345 (380)
121 TIGR02193 heptsyl_trn_I lipopo 97.5 0.0024 5.2E-08 61.0 14.0 104 9-126 1-108 (319)
122 PRK10125 putative glycosyl tra 97.5 0.14 3E-06 50.6 28.1 115 271-406 242-365 (405)
123 PLN02501 digalactosyldiacylgly 97.2 0.35 7.7E-06 50.1 25.4 76 323-413 602-682 (794)
124 PRK15490 Vi polysaccharide bio 97.1 0.43 9.3E-06 48.4 27.1 114 271-391 399-522 (578)
125 PLN02939 transferase, transfer 97.0 0.71 1.5E-05 49.7 29.9 133 271-411 780-930 (977)
126 PF13692 Glyco_trans_1_4: Glyc 97.0 0.0036 7.7E-08 51.2 7.9 127 271-412 3-135 (135)
127 PRK10017 colanic acid biosynth 97.0 0.46 1E-05 47.0 29.7 174 260-451 225-423 (426)
128 PRK14099 glycogen synthase; Pr 97.0 0.53 1.2E-05 47.7 30.2 39 5-45 1-47 (485)
129 PF13477 Glyco_trans_4_2: Glyc 96.8 0.013 2.7E-07 48.2 10.0 102 9-132 1-107 (139)
130 TIGR02201 heptsyl_trn_III lipo 96.8 0.34 7.4E-06 46.7 21.2 104 9-129 1-108 (344)
131 PRK10916 ADP-heptose:LPS hepto 96.6 0.16 3.5E-06 49.1 17.7 102 8-129 1-106 (348)
132 PRK10422 lipopolysaccharide co 96.6 0.092 2E-06 50.9 16.0 105 7-129 5-113 (352)
133 PRK09814 beta-1,6-galactofuran 96.6 0.011 2.4E-07 56.8 9.3 112 320-448 205-331 (333)
134 PRK10964 ADP-heptose:LPS hepto 96.6 0.11 2.5E-06 49.5 16.1 49 8-56 1-52 (322)
135 PF06722 DUF1205: Protein of u 96.6 0.0029 6.2E-08 48.2 3.8 62 259-325 30-97 (97)
136 cd03789 GT1_LPS_heptosyltransf 96.5 0.22 4.8E-06 46.4 16.8 101 9-129 1-105 (279)
137 TIGR02195 heptsyl_trn_II lipop 96.2 0.7 1.5E-05 44.3 19.0 100 9-128 1-104 (334)
138 KOG4626 O-linked N-acetylgluco 96.1 0.063 1.4E-06 53.7 10.9 121 267-391 756-889 (966)
139 PHA01633 putative glycosyl tra 96.0 0.18 3.8E-06 48.1 13.4 102 320-429 199-324 (335)
140 PF01975 SurE: Survival protei 95.9 0.035 7.5E-07 48.5 7.8 114 8-134 1-135 (196)
141 COG0859 RfaF ADP-heptose:LPS h 95.9 1.1 2.3E-05 43.1 18.5 104 7-129 1-107 (334)
142 PRK14098 glycogen synthase; Pr 95.7 0.17 3.7E-06 51.3 12.8 131 269-410 306-449 (489)
143 PF12000 Glyco_trans_4_3: Gkyc 95.6 0.17 3.7E-06 43.0 10.2 96 33-133 1-97 (171)
144 COG3914 Spy Predicted O-linked 95.1 0.19 4.1E-06 50.1 10.3 130 267-406 427-572 (620)
145 PF13524 Glyco_trans_1_2: Glyc 95.1 0.22 4.8E-06 37.5 8.8 83 347-447 9-91 (92)
146 PF13579 Glyco_trans_4_4: Glyc 95.1 0.067 1.4E-06 44.6 6.5 95 23-132 6-104 (160)
147 PRK13932 stationary phase surv 94.0 1 2.3E-05 41.0 11.8 113 5-132 3-133 (257)
148 PF13439 Glyco_transf_4: Glyco 93.9 0.39 8.4E-06 40.6 8.7 100 17-134 11-111 (177)
149 PHA01630 putative group 1 glyc 93.7 1.1 2.4E-05 42.9 12.2 76 328-412 196-294 (331)
150 KOG1111 N-acetylglucosaminyltr 93.5 7 0.00015 37.1 18.7 82 282-365 208-300 (426)
151 PRK02261 methylaspartate mutas 93.2 0.18 3.8E-06 41.3 5.0 57 5-61 1-61 (137)
152 PF08660 Alg14: Oligosaccharid 92.5 0.91 2E-05 38.7 8.6 112 12-134 2-131 (170)
153 PRK13933 stationary phase surv 92.3 2.2 4.8E-05 38.8 11.1 41 8-50 1-41 (253)
154 TIGR00715 precor6x_red precorr 92.2 0.85 1.8E-05 41.7 8.6 91 8-131 1-99 (256)
155 COG0496 SurE Predicted acid ph 91.7 0.85 1.8E-05 41.1 7.7 109 8-134 1-127 (252)
156 PRK13935 stationary phase surv 91.7 2.7 5.9E-05 38.2 11.0 42 8-51 1-42 (253)
157 TIGR02400 trehalose_OtsA alpha 91.6 1.6 3.5E-05 43.8 10.5 103 328-451 342-455 (456)
158 TIGR03713 acc_sec_asp1 accesso 91.5 2.6 5.7E-05 43.0 12.0 92 322-430 409-507 (519)
159 COG0003 ArsA Predicted ATPase 91.5 2.2 4.8E-05 40.4 10.7 40 8-47 2-42 (322)
160 TIGR00087 surE 5'/3'-nucleotid 91.4 3.2 6.9E-05 37.7 11.2 110 8-132 1-128 (244)
161 cd02067 B12-binding B12 bindin 90.8 2.1 4.6E-05 33.9 8.6 36 9-44 1-36 (119)
162 PF06258 Mito_fiss_Elm1: Mitoc 90.4 5.2 0.00011 37.8 12.1 121 268-391 145-282 (311)
163 COG4370 Uncharacterized protei 90.2 0.99 2.1E-05 41.5 6.7 91 322-423 294-387 (412)
164 PRK00346 surE 5'(3')-nucleotid 90.1 4.8 0.0001 36.6 11.1 106 8-132 1-124 (250)
165 TIGR02919 accessory Sec system 89.5 5.7 0.00012 39.6 12.1 133 270-427 284-424 (438)
166 PF02951 GSH-S_N: Prokaryotic 89.4 0.62 1.3E-05 37.0 4.3 40 8-47 1-43 (119)
167 COG1618 Predicted nucleotide k 89.4 2.7 5.7E-05 35.2 8.0 55 7-61 5-59 (179)
168 cd03788 GT1_TPS Trehalose-6-Ph 89.1 1.7 3.6E-05 43.8 8.3 100 328-450 347-459 (460)
169 PF02374 ArsA_ATPase: Anion-tr 89.0 0.37 8E-06 45.5 3.2 40 8-47 1-41 (305)
170 COG3660 Predicted nucleoside-d 88.3 20 0.00043 32.6 18.1 76 290-366 189-271 (329)
171 PRK02797 4-alpha-L-fucosyltran 88.0 5 0.00011 37.4 9.7 81 322-410 206-292 (322)
172 PF02310 B12-binding: B12 bind 87.5 3.5 7.7E-05 32.6 7.8 36 9-44 2-37 (121)
173 PF07355 GRDB: Glycine/sarcosi 87.2 5.1 0.00011 37.9 9.4 77 17-131 30-118 (349)
174 smart00851 MGS MGS-like domain 86.8 3.4 7.4E-05 30.9 6.8 79 24-128 2-89 (90)
175 PF02441 Flavoprotein: Flavopr 86.6 0.77 1.7E-05 37.2 3.4 46 8-54 1-46 (129)
176 PF02571 CbiJ: Precorrin-6x re 85.2 2.5 5.3E-05 38.6 6.3 92 8-132 1-101 (249)
177 cd00550 ArsA_ATPase Oxyanion-t 84.6 3.4 7.4E-05 37.9 7.0 38 9-46 1-39 (254)
178 COG4088 Predicted nucleotide k 84.4 21 0.00045 31.4 10.9 104 9-136 3-112 (261)
179 PF05159 Capsule_synth: Capsul 83.4 6.4 0.00014 36.4 8.4 80 286-368 142-226 (269)
180 KOG2941 Beta-1,4-mannosyltrans 83.1 43 0.00094 31.8 27.6 124 5-136 10-141 (444)
181 PRK08057 cobalt-precorrin-6x r 82.9 12 0.00025 34.2 9.6 92 8-132 3-100 (248)
182 cd03793 GT1_Glycogen_synthase_ 82.4 5.8 0.00013 40.6 8.0 84 331-419 467-559 (590)
183 COG2185 Sbm Methylmalonyl-CoA 82.3 2.1 4.5E-05 34.9 4.0 41 5-45 10-50 (143)
184 cd02070 corrinoid_protein_B12- 82.2 13 0.00027 32.8 9.3 102 7-129 82-189 (201)
185 PF02142 MGS: MGS-like domain 81.2 1.2 2.6E-05 33.8 2.2 85 24-129 2-95 (95)
186 cd00561 CobA_CobO_BtuR ATP:cor 80.7 25 0.00055 29.5 10.1 95 10-114 5-106 (159)
187 cd01425 RPS2 Ribosomal protein 80.6 7.6 0.00017 33.9 7.3 113 20-134 41-160 (193)
188 TIGR02015 BchY chlorophyllide 80.1 15 0.00032 36.5 10.0 94 9-131 287-380 (422)
189 PRK13931 stationary phase surv 79.7 31 0.00067 31.7 11.1 108 8-132 1-129 (261)
190 PF12146 Hydrolase_4: Putative 79.5 3.6 7.7E-05 30.0 4.1 35 8-42 16-50 (79)
191 PLN03063 alpha,alpha-trehalose 79.2 7.3 0.00016 42.1 8.0 99 334-454 371-479 (797)
192 COG2894 MinD Septum formation 78.9 10 0.00022 33.6 7.2 36 9-44 3-40 (272)
193 cd01423 MGS_CPS_I_III Methylgl 78.6 9.2 0.0002 30.1 6.7 95 11-129 3-106 (116)
194 PRK06732 phosphopantothenate-- 78.2 4.8 0.0001 36.3 5.4 37 8-44 1-49 (229)
195 PF04127 DFP: DNA / pantothena 78.2 2.6 5.6E-05 36.5 3.6 53 6-60 2-66 (185)
196 PF07429 Glyco_transf_56: 4-al 78.1 24 0.00052 33.6 10.0 82 322-411 245-332 (360)
197 TIGR00708 cobA cob(I)alamin ad 77.5 33 0.00072 29.3 9.9 96 9-114 7-108 (173)
198 cd01974 Nitrogenase_MoFe_beta 77.4 18 0.00039 36.2 9.8 26 103-131 377-402 (435)
199 PF06564 YhjQ: YhjQ protein; 76.3 23 0.0005 32.1 9.1 36 8-43 1-38 (243)
200 PRK08305 spoVFB dipicolinate s 76.2 3.3 7.1E-05 36.1 3.6 45 6-50 4-48 (196)
201 cd01980 Chlide_reductase_Y Chl 76.1 14 0.00031 36.6 8.6 94 9-132 282-376 (416)
202 PF04464 Glyphos_transf: CDP-G 76.0 2.9 6.3E-05 40.7 3.7 111 321-443 251-364 (369)
203 PRK06249 2-dehydropantoate 2-r 75.9 4.1 8.8E-05 38.7 4.6 49 5-59 3-51 (313)
204 cd00532 MGS-like MGS-like doma 75.6 12 0.00026 29.2 6.5 86 20-130 10-105 (112)
205 COG0052 RpsB Ribosomal protein 75.6 20 0.00043 32.2 8.3 32 103-134 156-189 (252)
206 PRK05986 cob(I)alamin adenolsy 75.4 48 0.001 28.8 10.5 99 6-114 21-126 (191)
207 COG0438 RfaG Glycosyltransfera 74.9 70 0.0015 29.5 16.8 80 322-413 257-343 (381)
208 PF00551 Formyl_trans_N: Formy 74.6 17 0.00037 31.3 7.7 104 8-134 1-111 (181)
209 COG1663 LpxK Tetraacyldisaccha 74.6 9.1 0.0002 36.2 6.3 35 13-47 55-89 (336)
210 TIGR01285 nifN nitrogenase mol 74.4 20 0.00042 35.8 9.1 88 7-131 311-398 (432)
211 cd01424 MGS_CPS_II Methylglyox 73.9 17 0.00036 28.3 6.9 84 19-129 10-100 (110)
212 PF06506 PrpR_N: Propionate ca 73.9 7.5 0.00016 33.3 5.3 111 19-134 17-153 (176)
213 PRK04885 ppnK inorganic polyph 73.6 5.2 0.00011 36.8 4.5 52 339-412 36-93 (265)
214 COG1484 DnaC DNA replication p 73.2 18 0.00039 33.1 7.9 42 7-48 105-146 (254)
215 PRK13934 stationary phase surv 72.8 18 0.0004 33.1 7.7 42 8-51 1-42 (266)
216 COG2861 Uncharacterized protei 71.5 25 0.00053 31.5 7.8 41 87-131 137-180 (250)
217 cd02071 MM_CoA_mut_B12_BD meth 71.3 6.5 0.00014 31.4 4.1 52 9-60 1-56 (122)
218 PF01075 Glyco_transf_9: Glyco 71.2 7.4 0.00016 35.3 5.0 96 268-366 104-208 (247)
219 cd01965 Nitrogenase_MoFe_beta_ 70.3 34 0.00075 34.0 9.8 27 103-132 371-397 (428)
220 cd02037 MRP-like MRP (Multiple 69.6 21 0.00046 30.1 7.2 31 15-45 8-38 (169)
221 PRK13789 phosphoribosylamine-- 69.3 13 0.00028 37.1 6.5 34 7-45 4-37 (426)
222 PRK05973 replicative DNA helic 69.1 23 0.0005 32.0 7.5 41 9-49 66-106 (237)
223 PRK10867 signal recognition pa 68.5 32 0.0007 34.2 9.0 52 9-60 102-162 (433)
224 PF01012 ETF: Electron transfe 68.4 14 0.0003 31.1 5.7 105 10-132 2-122 (164)
225 KOG1250 Threonine/serine dehyd 67.8 1.2E+02 0.0027 29.4 15.6 61 344-413 248-317 (457)
226 PF07015 VirC1: VirC1 protein; 67.5 5.7 0.00012 35.5 3.2 40 10-49 4-44 (231)
227 PRK13982 bifunctional SbtC-lik 67.5 13 0.00028 37.3 6.0 54 5-60 254-319 (475)
228 PRK02155 ppnK NAD(+)/NADH kina 67.4 8.4 0.00018 36.1 4.5 53 338-412 63-119 (291)
229 PRK14077 pnk inorganic polypho 67.2 7.8 0.00017 36.2 4.2 56 335-412 61-120 (287)
230 TIGR00460 fmt methionyl-tRNA f 67.0 35 0.00077 32.3 8.7 32 8-44 1-32 (313)
231 PRK08506 replicative DNA helic 66.5 34 0.00074 34.6 8.9 41 9-49 194-234 (472)
232 TIGR01501 MthylAspMutase methy 66.3 9.9 0.00021 30.9 4.1 54 8-61 2-59 (134)
233 PRK09620 hypothetical protein; 66.2 9.5 0.00021 34.3 4.4 39 6-44 2-52 (229)
234 COG0541 Ffh Signal recognition 65.9 31 0.00068 33.9 8.0 54 7-60 100-161 (451)
235 PF04413 Glycos_transf_N: 3-De 65.8 10 0.00022 32.9 4.4 96 10-132 23-126 (186)
236 PF09314 DUF1972: Domain of un 65.7 89 0.0019 27.0 10.6 44 18-61 16-62 (185)
237 COG2910 Putative NADH-flavin r 65.3 7.6 0.00016 33.3 3.3 36 8-47 1-36 (211)
238 TIGR02370 pyl_corrinoid methyl 65.2 12 0.00026 32.7 4.8 99 7-126 84-188 (197)
239 PRK12311 rpsB 30S ribosomal pr 64.6 14 0.00031 34.9 5.4 33 102-134 151-185 (326)
240 PRK08220 2,3-dihydroxybenzoate 64.4 47 0.001 29.9 8.9 39 3-45 4-42 (252)
241 PRK11519 tyrosine kinase; Prov 64.3 1.1E+02 0.0024 32.9 12.7 38 7-44 525-564 (719)
242 PRK07313 phosphopantothenoylcy 64.1 7.9 0.00017 33.4 3.4 44 8-52 2-45 (182)
243 PRK13011 formyltetrahydrofolat 63.9 66 0.0014 30.0 9.6 105 5-133 87-196 (286)
244 cd07039 TPP_PYR_POX Pyrimidine 63.4 43 0.00093 28.3 7.7 26 342-367 65-96 (164)
245 PRK04539 ppnK inorganic polyph 62.9 11 0.00024 35.4 4.3 57 334-412 64-124 (296)
246 cd03466 Nitrogenase_NifN_2 Nit 62.8 61 0.0013 32.3 9.8 26 103-131 372-397 (429)
247 TIGR01283 nifE nitrogenase mol 62.5 60 0.0013 32.7 9.8 88 7-131 326-420 (456)
248 PRK01911 ppnK inorganic polyph 62.3 11 0.00024 35.3 4.2 56 335-412 61-120 (292)
249 cd03115 SRP The signal recogni 62.2 80 0.0017 26.6 9.4 38 10-47 3-40 (173)
250 PRK12921 2-dehydropantoate 2-r 61.9 8.8 0.00019 36.1 3.6 47 8-59 1-47 (305)
251 PRK05632 phosphate acetyltrans 61.7 1.1E+02 0.0024 32.7 12.0 102 9-134 4-116 (684)
252 cd01421 IMPCH Inosine monophos 61.3 19 0.0004 31.1 5.0 38 22-61 11-48 (187)
253 PRK13234 nifH nitrogenase redu 61.3 15 0.00032 34.6 4.9 41 5-45 1-42 (295)
254 PRK14098 glycogen synthase; Pr 61.1 14 0.00031 37.5 5.1 38 6-45 4-49 (489)
255 PRK06027 purU formyltetrahydro 60.8 42 0.0009 31.4 7.8 104 5-132 87-195 (286)
256 TIGR00347 bioD dethiobiotin sy 60.8 35 0.00076 28.6 6.9 28 14-41 5-32 (166)
257 TIGR03600 phage_DnaB phage rep 60.5 61 0.0013 32.2 9.4 120 9-133 196-353 (421)
258 PRK02649 ppnK inorganic polyph 60.3 12 0.00026 35.3 4.1 53 338-412 68-124 (305)
259 TIGR00725 conserved hypothetic 60.1 94 0.002 26.1 9.1 100 256-368 20-123 (159)
260 PRK05784 phosphoribosylamine-- 59.9 46 0.001 33.8 8.5 32 8-44 1-34 (486)
261 COG1703 ArgK Putative periplas 59.7 72 0.0016 29.9 8.7 40 8-47 52-91 (323)
262 PRK03372 ppnK inorganic polyph 59.7 13 0.00027 35.1 4.1 53 338-412 72-128 (306)
263 COG1797 CobB Cobyrinic acid a, 59.6 22 0.00047 34.9 5.7 39 9-47 2-42 (451)
264 PRK14478 nitrogenase molybdenu 59.6 63 0.0014 32.7 9.4 87 7-130 324-417 (475)
265 PRK06522 2-dehydropantoate 2-r 59.4 7.6 0.00016 36.5 2.7 45 8-57 1-46 (304)
266 PRK03378 ppnK inorganic polyph 59.4 12 0.00027 34.9 4.0 56 335-412 60-119 (292)
267 PRK05920 aromatic acid decarbo 59.3 11 0.00023 33.2 3.3 44 7-51 3-46 (204)
268 TIGR01425 SRP54_euk signal rec 59.2 62 0.0013 32.1 8.9 39 9-47 102-140 (429)
269 cd07038 TPP_PYR_PDC_IPDC_like 59.2 28 0.00061 29.3 5.9 25 344-368 63-93 (162)
270 PF10083 DUF2321: Uncharacteri 59.1 18 0.00038 29.9 4.3 76 366-454 78-153 (158)
271 PF08433 KTI12: Chromatin asso 59.1 58 0.0013 30.1 8.3 100 10-136 4-109 (270)
272 PRK05647 purN phosphoribosylgl 59.1 77 0.0017 27.8 8.7 51 8-61 2-58 (200)
273 TIGR02329 propionate_PrpR prop 59.0 53 0.0012 33.7 8.7 110 18-133 36-172 (526)
274 PHA02542 41 41 helicase; Provi 58.9 37 0.0008 34.3 7.5 39 10-48 193-231 (473)
275 KOG0780 Signal recognition par 58.9 41 0.00088 32.6 7.2 52 8-59 102-161 (483)
276 PRK01077 cobyrinic acid a,c-di 58.8 14 0.00031 37.0 4.7 103 9-134 5-124 (451)
277 PRK12859 3-ketoacyl-(acyl-carr 58.6 32 0.0007 31.2 6.7 32 9-42 7-39 (256)
278 PRK14501 putative bifunctional 58.4 30 0.00064 37.2 7.2 112 326-454 346-464 (726)
279 PRK01231 ppnK inorganic polyph 58.4 37 0.0008 31.9 7.0 53 338-412 62-118 (295)
280 PRK01175 phosphoribosylformylg 58.2 1.5E+02 0.0033 27.2 11.3 58 5-65 1-59 (261)
281 COG2099 CobK Precorrin-6x redu 58.2 1.2E+02 0.0026 27.6 9.6 93 7-132 2-101 (257)
282 PF01470 Peptidase_C15: Pyrogl 58.0 22 0.00047 31.3 5.1 26 8-33 1-28 (202)
283 TIGR01205 D_ala_D_alaTIGR D-al 58.0 63 0.0014 30.4 8.8 37 9-45 1-41 (315)
284 COG0552 FtsY Signal recognitio 57.8 41 0.00089 31.9 7.0 53 8-60 140-200 (340)
285 PRK06988 putative formyltransf 57.5 50 0.0011 31.3 7.8 32 8-44 3-34 (312)
286 cd01968 Nitrogenase_NifE_I Nit 57.5 90 0.002 30.9 10.0 25 103-130 356-380 (410)
287 PRK06849 hypothetical protein; 57.5 20 0.00043 35.2 5.4 36 6-45 3-38 (389)
288 PRK12475 thiamine/molybdopteri 57.3 53 0.0012 31.5 8.0 32 5-41 22-54 (338)
289 PRK06718 precorrin-2 dehydroge 56.8 64 0.0014 28.3 7.9 146 268-432 10-165 (202)
290 TIGR02195 heptsyl_trn_II lipop 56.8 85 0.0018 29.9 9.5 99 8-132 175-278 (334)
291 PLN02470 acetolactate synthase 56.7 26 0.00056 36.6 6.3 91 275-367 2-109 (585)
292 PRK02231 ppnK inorganic polyph 56.7 11 0.00024 34.8 3.2 58 333-412 37-98 (272)
293 cd02069 methionine_synthase_B1 56.7 21 0.00045 31.7 4.8 55 6-60 87-145 (213)
294 PRK13394 3-hydroxybutyrate deh 56.5 70 0.0015 28.9 8.6 34 9-45 8-41 (262)
295 PF06925 MGDG_synth: Monogalac 56.3 37 0.00079 28.7 6.2 47 81-132 72-124 (169)
296 TIGR02852 spore_dpaB dipicolin 56.3 15 0.00033 31.8 3.7 41 8-48 1-41 (187)
297 PRK03501 ppnK inorganic polyph 56.1 18 0.00039 33.3 4.4 53 339-412 40-97 (264)
298 PRK01185 ppnK inorganic polyph 56.0 14 0.00031 34.1 3.8 53 338-412 52-105 (271)
299 TIGR00959 ffh signal recogniti 55.8 65 0.0014 32.0 8.5 41 9-49 101-142 (428)
300 PF01210 NAD_Gly3P_dh_N: NAD-d 55.5 8.1 0.00018 32.4 2.0 32 9-45 1-32 (157)
301 PF00448 SRP54: SRP54-type pro 55.3 45 0.00098 29.1 6.7 51 10-60 4-62 (196)
302 TIGR00345 arsA arsenite-activa 55.3 46 0.001 31.0 7.2 23 25-47 3-25 (284)
303 COG1066 Sms Predicted ATP-depe 54.9 60 0.0013 31.8 7.7 100 10-134 96-220 (456)
304 PLN02929 NADH kinase 54.6 48 0.001 31.1 6.9 64 339-412 65-137 (301)
305 TIGR01007 eps_fam capsular exo 54.3 25 0.00054 30.8 5.0 40 5-44 14-55 (204)
306 cd01981 Pchlide_reductase_B Pc 53.9 1.4E+02 0.0031 29.7 10.8 27 103-132 370-396 (430)
307 cd07035 TPP_PYR_POX_like Pyrim 53.9 31 0.00067 28.6 5.3 26 343-368 62-93 (155)
308 TIGR00640 acid_CoA_mut_C methy 53.9 25 0.00054 28.5 4.5 56 6-61 1-60 (132)
309 PRK06029 3-octaprenyl-4-hydrox 53.8 13 0.00029 32.1 3.0 44 8-52 2-46 (185)
310 KOG2836 Protein tyrosine phosp 53.7 1.2E+02 0.0026 24.5 8.4 54 5-61 14-69 (173)
311 TIGR01286 nifK nitrogenase mol 53.7 84 0.0018 32.2 9.2 26 103-131 437-462 (515)
312 TIGR03878 thermo_KaiC_2 KaiC d 52.6 53 0.0012 30.1 7.0 36 10-45 39-74 (259)
313 TIGR00355 purH phosphoribosyla 52.3 24 0.00053 35.4 4.9 44 22-67 11-56 (511)
314 PF09001 DUF1890: Domain of un 52.2 9.5 0.00021 30.7 1.7 40 12-51 3-43 (139)
315 PRK08006 replicative DNA helic 52.1 1E+02 0.0023 31.1 9.5 41 9-49 226-267 (471)
316 PF06418 CTP_synth_N: CTP synt 51.7 19 0.0004 32.8 3.6 41 8-48 1-44 (276)
317 PRK08226 short chain dehydroge 51.5 63 0.0014 29.3 7.4 33 9-44 7-39 (263)
318 COG0859 RfaF ADP-heptose:LPS h 51.5 60 0.0013 31.0 7.5 97 8-134 176-280 (334)
319 COG2874 FlaH Predicted ATPases 51.3 12 0.00026 33.0 2.3 37 11-47 32-68 (235)
320 PLN02935 Bifunctional NADH kin 50.9 21 0.00045 35.9 4.1 53 338-412 262-318 (508)
321 PF00731 AIRC: AIR carboxylase 50.4 1.5E+02 0.0032 24.7 11.7 139 271-431 2-148 (150)
322 cd07037 TPP_PYR_MenD Pyrimidin 50.3 45 0.00097 28.1 5.6 25 344-368 64-94 (162)
323 PRK06194 hypothetical protein; 50.3 58 0.0013 30.1 7.1 32 9-43 7-38 (287)
324 cd03114 ArgK-like The function 50.2 1.4E+02 0.0031 24.5 8.8 35 10-44 2-36 (148)
325 PRK11199 tyrA bifunctional cho 50.0 1.1E+02 0.0024 29.8 9.1 32 8-44 99-131 (374)
326 PRK07952 DNA replication prote 49.9 82 0.0018 28.6 7.6 37 9-45 101-137 (244)
327 PF06506 PrpR_N: Propionate ca 49.6 37 0.00079 29.0 5.1 71 337-412 31-124 (176)
328 PRK07523 gluconate 5-dehydroge 49.5 78 0.0017 28.5 7.7 33 9-44 11-43 (255)
329 TIGR02113 coaC_strep phosphopa 49.3 19 0.00041 30.9 3.3 43 9-52 2-44 (177)
330 CHL00072 chlL photochlorophyll 49.2 30 0.00066 32.3 4.9 39 8-46 1-39 (290)
331 PRK14619 NAD(P)H-dependent gly 49.1 28 0.00061 32.9 4.7 35 6-45 3-37 (308)
332 PRK06904 replicative DNA helic 49.1 24 0.00051 35.7 4.4 41 9-49 223-264 (472)
333 PRK07984 enoyl-(acyl carrier p 49.0 95 0.0021 28.4 8.2 33 9-43 7-40 (262)
334 TIGR00421 ubiX_pad polyprenyl 48.9 15 0.00032 31.7 2.5 42 9-51 1-42 (181)
335 PRK14075 pnk inorganic polypho 48.9 24 0.00052 32.4 4.0 52 339-412 42-94 (256)
336 COG2109 BtuR ATP:corrinoid ade 48.8 1.8E+02 0.0039 25.2 10.1 95 10-114 31-133 (198)
337 TIGR00682 lpxK tetraacyldisacc 48.8 35 0.00075 32.3 5.2 33 15-47 38-70 (311)
338 cd00984 DnaB_C DnaB helicase C 48.5 63 0.0014 29.0 6.8 40 10-49 16-56 (242)
339 COG0504 PyrG CTP synthase (UTP 48.4 38 0.00083 33.7 5.4 42 8-49 1-45 (533)
340 PRK12342 hypothetical protein; 47.8 34 0.00074 31.3 4.8 95 20-133 32-145 (254)
341 PRK05579 bifunctional phosphop 47.7 20 0.00044 35.3 3.5 47 5-52 4-50 (399)
342 KOG1209 1-Acyl dihydroxyaceton 47.4 26 0.00056 30.9 3.7 33 8-42 7-39 (289)
343 COG0223 Fmt Methionyl-tRNA for 47.2 35 0.00076 32.1 4.8 36 7-47 1-36 (307)
344 cd01715 ETF_alpha The electron 47.1 1.5E+02 0.0031 25.0 8.4 103 10-132 2-115 (168)
345 PRK00005 fmt methionyl-tRNA fo 47.1 79 0.0017 29.9 7.4 31 8-43 1-31 (309)
346 PRK08229 2-dehydropantoate 2-r 47.1 16 0.00034 35.1 2.8 46 8-58 3-48 (341)
347 PRK04940 hypothetical protein; 47.1 50 0.0011 28.4 5.4 32 103-134 60-92 (180)
348 PRK07206 hypothetical protein; 47.1 76 0.0016 31.4 7.7 32 9-45 4-35 (416)
349 PRK07236 hypothetical protein; 46.8 23 0.00051 34.6 4.0 38 1-44 1-38 (386)
350 PRK00881 purH bifunctional pho 46.5 47 0.001 33.6 5.9 45 21-67 14-60 (513)
351 PRK06935 2-deoxy-D-gluconate 3 46.4 93 0.002 28.1 7.7 33 9-44 16-48 (258)
352 PRK06398 aldose dehydrogenase; 46.3 1.4E+02 0.0031 26.9 9.0 33 9-44 7-39 (258)
353 PRK03359 putative electron tra 45.9 38 0.00082 31.0 4.8 97 18-133 31-148 (256)
354 PF04321 RmlD_sub_bind: RmlD s 45.8 74 0.0016 29.6 7.0 33 8-44 1-33 (286)
355 PRK08840 replicative DNA helic 45.6 1.4E+02 0.0031 30.1 9.3 41 10-50 220-261 (464)
356 PRK13010 purU formyltetrahydro 45.5 1.3E+02 0.0028 28.2 8.3 112 6-166 92-206 (289)
357 PF00148 Oxidored_nitro: Nitro 45.5 2.1E+02 0.0047 28.0 10.6 91 8-132 272-367 (398)
358 PF04748 Polysacc_deac_2: Dive 45.5 75 0.0016 28.2 6.5 42 87-132 105-149 (213)
359 PRK12743 oxidoreductase; Provi 45.5 99 0.0021 27.9 7.7 32 9-43 3-34 (256)
360 TIGR00521 coaBC_dfp phosphopan 45.4 21 0.00045 35.0 3.2 46 6-52 2-47 (390)
361 PRK08155 acetolactate synthase 45.4 55 0.0012 34.0 6.6 89 275-367 3-109 (564)
362 PRK07004 replicative DNA helic 45.2 1.1E+02 0.0023 30.9 8.3 40 10-49 216-256 (460)
363 PRK07109 short chain dehydroge 44.9 1.2E+02 0.0026 29.0 8.4 33 9-44 9-41 (334)
364 PRK14477 bifunctional nitrogen 44.8 1.3E+02 0.0029 33.3 9.6 95 6-131 319-414 (917)
365 PRK03708 ppnK inorganic polyph 44.6 26 0.00056 32.6 3.6 52 339-412 58-112 (277)
366 PRK12823 benD 1,6-dihydroxycyc 44.6 92 0.002 28.2 7.4 33 9-44 9-41 (260)
367 TIGR00379 cobB cobyrinic acid 44.6 1.8E+02 0.0038 29.3 9.8 106 10-134 2-120 (449)
368 PRK10916 ADP-heptose:LPS hepto 44.5 98 0.0021 29.7 7.8 102 9-132 182-288 (348)
369 PRK07889 enoyl-(acyl carrier p 44.3 69 0.0015 29.1 6.4 32 9-43 8-41 (256)
370 TIGR02699 archaeo_AfpA archaeo 44.3 20 0.00044 30.6 2.6 42 9-51 1-44 (174)
371 PRK13604 luxD acyl transferase 44.1 45 0.00098 31.4 5.1 36 7-42 36-71 (307)
372 PF01995 DUF128: Domain of unk 43.9 89 0.0019 28.2 6.7 89 258-367 125-223 (236)
373 PRK11823 DNA repair protein Ra 43.9 2.1E+02 0.0045 28.8 10.1 40 10-49 83-122 (446)
374 KOG0081 GTPase Rab27, small G 43.9 57 0.0012 27.2 4.9 45 90-134 109-165 (219)
375 PF02826 2-Hacid_dh_C: D-isome 43.8 57 0.0012 27.9 5.5 105 268-408 36-143 (178)
376 PTZ00345 glycerol-3-phosphate 43.8 1.2E+02 0.0025 29.6 8.0 36 5-45 9-51 (365)
377 cd02032 Bchl_like This family 43.7 38 0.00083 31.1 4.7 37 8-44 1-37 (267)
378 COG0300 DltE Short-chain dehyd 43.6 1.4E+02 0.003 27.5 8.1 84 7-113 5-94 (265)
379 COG0299 PurN Folate-dependent 43.6 2.2E+02 0.0048 24.8 8.7 101 8-132 1-109 (200)
380 PRK02910 light-independent pro 43.2 1.4E+02 0.0031 30.6 9.0 26 103-131 362-387 (519)
381 PRK06321 replicative DNA helic 43.2 1.5E+02 0.0033 30.0 9.0 40 10-49 229-269 (472)
382 cd01121 Sms Sms (bacterial rad 43.1 70 0.0015 31.2 6.5 39 10-48 85-123 (372)
383 PRK14476 nitrogenase molybdenu 43.1 1.2E+02 0.0027 30.5 8.4 86 7-131 311-396 (455)
384 cd01985 ETF The electron trans 42.8 1.1E+02 0.0023 26.2 7.0 104 10-132 2-123 (181)
385 COG0205 PfkA 6-phosphofructoki 42.7 69 0.0015 30.7 6.2 111 7-130 2-124 (347)
386 PRK07688 thiamine/molybdopteri 42.6 61 0.0013 31.1 5.9 34 5-43 22-56 (339)
387 PRK06395 phosphoribosylamine-- 42.5 1.2E+02 0.0027 30.2 8.3 31 8-43 3-33 (435)
388 PRK05595 replicative DNA helic 42.4 1.3E+02 0.0028 30.2 8.5 40 10-49 204-244 (444)
389 PF03641 Lysine_decarbox: Poss 42.4 72 0.0016 25.8 5.5 78 288-367 2-91 (133)
390 COG1748 LYS9 Saccharopine dehy 42.3 1.1E+02 0.0025 29.8 7.7 94 7-134 1-102 (389)
391 PRK12446 undecaprenyldiphospho 42.3 1E+02 0.0022 29.7 7.6 28 338-367 91-121 (352)
392 PRK01372 ddl D-alanine--D-alan 42.3 51 0.0011 30.9 5.4 51 7-57 4-59 (304)
393 TIGR02398 gluc_glyc_Psyn gluco 42.1 3.9E+02 0.0085 27.2 13.9 109 324-453 364-483 (487)
394 TIGR00730 conserved hypothetic 42.0 1.2E+02 0.0026 26.0 7.0 101 257-367 22-133 (178)
395 PRK14569 D-alanyl-alanine synt 42.0 50 0.0011 31.0 5.2 38 5-42 1-42 (296)
396 PRK13869 plasmid-partitioning 42.0 42 0.00091 33.2 4.8 38 7-44 120-159 (405)
397 TIGR01281 DPOR_bchL light-inde 42.0 43 0.00092 30.8 4.7 36 8-43 1-36 (268)
398 COG1893 ApbA Ketopantoate redu 41.9 28 0.0006 32.9 3.4 49 8-61 1-49 (307)
399 PRK06921 hypothetical protein; 41.9 2.8E+02 0.0061 25.5 10.6 37 8-44 118-155 (266)
400 PRK05876 short chain dehydroge 41.8 1.3E+02 0.0028 27.7 7.9 33 8-43 6-38 (275)
401 PRK08277 D-mannonate oxidoredu 41.8 1.3E+02 0.0029 27.5 8.0 33 9-44 11-43 (278)
402 PF01372 Melittin: Melittin; 41.7 5.4 0.00012 21.4 -0.7 17 349-365 1-17 (26)
403 PRK10037 cell division protein 41.7 38 0.00083 30.8 4.3 37 8-44 1-39 (250)
404 TIGR02700 flavo_MJ0208 archaeo 41.5 31 0.00068 31.1 3.6 45 9-53 1-47 (234)
405 PRK08760 replicative DNA helic 41.4 1.2E+02 0.0027 30.6 8.1 41 9-49 231-272 (476)
406 COG4394 Uncharacterized protei 41.4 2.3E+02 0.005 26.4 8.8 29 16-44 12-41 (370)
407 KOG0853 Glycosyltransferase [C 41.4 16 0.00034 36.7 1.8 62 352-424 381-442 (495)
408 PF13419 HAD_2: Haloacid dehal 41.3 66 0.0014 26.6 5.5 88 24-130 82-176 (176)
409 PRK09841 cryptic autophosphory 41.3 4.1E+02 0.009 28.6 12.5 38 7-44 530-569 (726)
410 PRK14076 pnk inorganic polypho 41.3 30 0.00065 35.9 3.8 52 341-412 349-404 (569)
411 PRK08303 short chain dehydroge 41.2 1.2E+02 0.0025 28.6 7.6 32 9-43 9-40 (305)
412 PRK13656 trans-2-enoyl-CoA red 41.1 1.5E+02 0.0032 29.1 8.2 34 8-43 41-74 (398)
413 PRK04148 hypothetical protein; 41.0 53 0.0012 26.7 4.4 33 6-44 16-48 (134)
414 PRK12748 3-ketoacyl-(acyl-carr 40.9 1.6E+02 0.0035 26.5 8.4 34 8-43 5-39 (256)
415 TIGR00655 PurU formyltetrahydr 40.8 1.9E+02 0.004 27.0 8.6 112 6-166 83-197 (280)
416 PRK09739 hypothetical protein; 40.8 68 0.0015 28.0 5.6 38 5-42 1-41 (199)
417 PLN02695 GDP-D-mannose-3',5'-e 40.8 45 0.00098 32.4 4.9 34 6-43 20-53 (370)
418 PRK08116 hypothetical protein; 40.7 2.1E+02 0.0046 26.3 9.1 36 10-45 117-152 (268)
419 PF14626 RNase_Zc3h12a_2: Zc3h 40.7 35 0.00075 26.8 3.1 32 21-52 9-40 (122)
420 PF01075 Glyco_transf_9: Glyco 40.5 87 0.0019 28.1 6.5 98 7-134 105-212 (247)
421 PRK13695 putative NTPase; Prov 40.4 1.9E+02 0.004 24.4 8.1 53 8-60 1-53 (174)
422 PRK07856 short chain dehydroge 40.4 1.6E+02 0.0035 26.4 8.3 33 9-44 7-39 (252)
423 cd00501 Peptidase_C15 Pyroglut 40.3 1.1E+02 0.0025 26.5 6.8 27 8-34 1-29 (194)
424 PF02702 KdpD: Osmosensitive K 40.3 56 0.0012 28.6 4.7 40 7-46 5-44 (211)
425 COG3349 Uncharacterized conser 40.2 30 0.00064 34.8 3.4 34 8-46 1-34 (485)
426 cd01141 TroA_d Periplasmic bin 40.2 42 0.00091 28.7 4.1 29 103-131 69-99 (186)
427 PRK13196 pyrrolidone-carboxyla 40.1 77 0.0017 28.1 5.7 27 8-34 2-30 (211)
428 PRK08125 bifunctional UDP-gluc 40.0 1.1E+02 0.0024 32.5 7.9 32 8-44 1-33 (660)
429 COG4081 Uncharacterized protei 40.0 61 0.0013 25.9 4.3 43 8-50 4-47 (148)
430 TIGR01380 glut_syn glutathione 40.0 46 0.001 31.5 4.7 42 8-49 1-45 (312)
431 PLN02327 CTP synthase 39.9 51 0.0011 33.7 5.0 42 8-49 1-45 (557)
432 PRK08628 short chain dehydroge 39.9 1.4E+02 0.0031 26.8 7.9 41 1-45 1-41 (258)
433 CHL00194 ycf39 Ycf39; Provisio 39.7 46 0.00099 31.5 4.7 33 8-44 1-33 (317)
434 TIGR02201 heptsyl_trn_III lipo 39.6 3.4E+02 0.0073 25.9 10.7 99 9-132 183-287 (344)
435 PF13460 NAD_binding_10: NADH( 39.6 55 0.0012 27.7 4.8 44 15-61 4-47 (183)
436 TIGR01662 HAD-SF-IIIA HAD-supe 39.5 1.1E+02 0.0023 24.4 6.2 90 24-131 30-131 (132)
437 PRK05636 replicative DNA helic 39.5 81 0.0018 32.2 6.5 40 10-49 268-308 (505)
438 PRK06270 homoserine dehydrogen 39.4 2.1E+02 0.0045 27.5 9.1 59 331-390 80-150 (341)
439 COG2085 Predicted dinucleotide 39.3 46 0.00099 29.3 4.0 34 8-46 2-35 (211)
440 PRK08589 short chain dehydroge 39.3 1.3E+02 0.0027 27.6 7.4 33 9-44 7-39 (272)
441 PRK06079 enoyl-(acyl carrier p 39.2 51 0.0011 29.9 4.7 40 1-43 1-41 (252)
442 PRK04761 ppnK inorganic polyph 38.8 43 0.00094 30.4 4.0 28 339-368 26-57 (246)
443 PRK08322 acetolactate synthase 38.7 66 0.0014 33.2 6.0 26 342-367 65-96 (547)
444 PF05225 HTH_psq: helix-turn-h 38.5 59 0.0013 20.6 3.5 26 398-425 1-26 (45)
445 PF10649 DUF2478: Protein of u 38.4 2.4E+02 0.0052 23.7 9.9 112 12-134 3-133 (159)
446 PRK13768 GTPase; Provisional 38.4 1.5E+02 0.0033 27.0 7.7 37 9-45 4-40 (253)
447 PRK12828 short chain dehydroge 38.4 63 0.0014 28.6 5.2 40 1-44 1-40 (239)
448 COG3958 Transketolase, C-termi 38.4 1.8E+02 0.0038 27.2 7.7 108 271-410 195-312 (312)
449 PRK08862 short chain dehydroge 38.4 1.5E+02 0.0032 26.4 7.5 32 9-43 6-37 (227)
450 TIGR03453 partition_RepA plasm 38.3 50 0.0011 32.4 4.8 40 6-45 102-143 (387)
451 PRK11064 wecC UDP-N-acetyl-D-m 38.3 43 0.00094 33.2 4.3 34 5-43 1-34 (415)
452 PRK06719 precorrin-2 dehydroge 38.1 47 0.001 27.8 3.9 35 5-44 11-45 (157)
453 cd02072 Glm_B12_BD B12 binding 38.1 48 0.001 26.7 3.7 53 9-61 1-57 (128)
454 TIGR02655 circ_KaiC circadian 38.0 3.7E+02 0.008 27.3 11.0 42 9-50 265-306 (484)
455 COG0503 Apt Adenine/guanine ph 38.0 77 0.0017 27.2 5.3 38 92-131 44-83 (179)
456 COG0299 PurN Folate-dependent 38.0 70 0.0015 27.8 4.9 71 284-367 65-135 (200)
457 TIGR03575 selen_PSTK_euk L-ser 37.9 1.5E+02 0.0033 28.4 7.7 38 10-47 2-40 (340)
458 PLN02285 methionyl-tRNA formyl 37.9 1.4E+02 0.0031 28.6 7.6 39 6-45 5-45 (334)
459 PRK06128 oxidoreductase; Provi 37.8 1.5E+02 0.0033 27.6 7.9 32 9-43 56-87 (300)
460 TIGR00877 purD phosphoribosyla 37.8 2E+02 0.0044 28.4 9.1 34 8-46 1-34 (423)
461 PRK05748 replicative DNA helic 37.7 1.8E+02 0.0039 29.2 8.7 41 9-49 205-246 (448)
462 PF12695 Abhydrolase_5: Alpha/ 37.6 65 0.0014 25.7 4.8 35 10-44 1-35 (145)
463 cd02065 B12-binding_like B12 b 37.6 54 0.0012 25.8 4.1 34 10-43 2-35 (125)
464 PRK12829 short chain dehydroge 37.5 57 0.0012 29.5 4.8 36 5-44 9-44 (264)
465 PRK13236 nitrogenase reductase 37.5 65 0.0014 30.2 5.2 38 7-44 5-43 (296)
466 COG3195 Uncharacterized protei 36.9 1.9E+02 0.004 24.4 6.9 95 331-430 64-164 (176)
467 PRK06114 short chain dehydroge 36.9 1.7E+02 0.0037 26.3 7.8 33 9-44 9-41 (254)
468 PRK07478 short chain dehydroge 36.8 1.9E+02 0.0041 25.9 8.2 33 9-44 7-39 (254)
469 PRK09165 replicative DNA helic 36.6 1.9E+02 0.004 29.6 8.6 41 10-50 220-275 (497)
470 TIGR01011 rpsB_bact ribosomal 36.5 1.4E+02 0.0031 26.7 6.9 33 102-134 154-188 (225)
471 PRK00885 phosphoribosylamine-- 36.4 1.6E+02 0.0035 29.1 8.1 29 8-41 1-30 (420)
472 COG2099 CobK Precorrin-6x redu 36.3 68 0.0015 29.1 4.7 104 24-132 117-230 (257)
473 TIGR00853 pts-lac PTS system, 36.3 98 0.0021 23.4 5.0 38 6-43 2-39 (95)
474 COG0801 FolK 7,8-dihydro-6-hyd 36.2 77 0.0017 26.6 4.7 35 271-305 3-37 (160)
475 cd02034 CooC The accessory pro 36.1 87 0.0019 24.6 4.9 37 9-45 1-37 (116)
476 COG2210 Peroxiredoxin family p 36.0 78 0.0017 25.7 4.5 37 11-47 7-43 (137)
477 PRK05557 fabG 3-ketoacyl-(acyl 36.0 2E+02 0.0044 25.4 8.2 32 10-44 7-38 (248)
478 cd01075 NAD_bind_Leu_Phe_Val_D 35.9 58 0.0013 28.5 4.3 32 5-41 26-57 (200)
479 TIGR01917 gly_red_sel_B glycin 35.9 71 0.0015 31.4 5.1 64 271-368 307-372 (431)
480 PF07991 IlvN: Acetohydroxy ac 35.8 21 0.00045 30.0 1.4 50 7-61 4-55 (165)
481 TIGR01918 various_sel_PB selen 35.8 72 0.0016 31.3 5.1 25 344-368 348-372 (431)
482 COG0569 TrkA K+ transport syst 35.8 45 0.00098 29.9 3.7 34 8-46 1-34 (225)
483 PF02572 CobA_CobO_BtuR: ATP:c 35.8 92 0.002 26.6 5.3 96 9-114 5-107 (172)
484 TIGR00416 sms DNA repair prote 35.7 43 0.00094 33.6 3.9 39 10-48 97-135 (454)
485 PRK06276 acetolactate synthase 35.6 80 0.0017 33.0 6.0 26 342-367 65-96 (586)
486 PRK06947 glucose-1-dehydrogena 35.6 1.6E+02 0.0035 26.2 7.5 33 8-43 2-34 (248)
487 COG0240 GpsA Glycerol-3-phosph 35.6 54 0.0012 31.1 4.2 33 7-44 1-33 (329)
488 PRK05299 rpsB 30S ribosomal pr 35.5 1.4E+02 0.0031 27.4 6.8 33 102-134 156-190 (258)
489 TIGR01832 kduD 2-deoxy-D-gluco 35.4 1.6E+02 0.0036 26.2 7.5 33 9-44 6-38 (248)
490 PF01695 IstB_IS21: IstB-like 35.4 33 0.00072 29.4 2.7 45 7-51 47-91 (178)
491 TIGR00750 lao LAO/AO transport 35.2 2.5E+02 0.0054 26.3 8.8 39 9-47 36-74 (300)
492 PF10727 Rossmann-like: Rossma 35.1 1.3E+02 0.0027 24.3 5.7 36 5-45 8-43 (127)
493 PF00282 Pyridoxal_deC: Pyrido 35.1 99 0.0021 30.2 6.2 70 341-412 104-191 (373)
494 PRK07710 acetolactate synthase 35.0 69 0.0015 33.3 5.4 26 342-367 80-111 (571)
495 TIGR03880 KaiC_arch_3 KaiC dom 35.0 1E+02 0.0022 27.4 5.8 41 9-49 18-58 (224)
496 COG2120 Uncharacterized protei 34.9 69 0.0015 29.0 4.7 40 5-44 8-47 (237)
497 PRK05541 adenylylsulfate kinas 34.8 2.8E+02 0.006 23.3 11.2 47 1-47 1-47 (176)
498 PLN02778 3,5-epimerase/4-reduc 34.8 78 0.0017 29.7 5.3 32 5-40 7-38 (298)
499 PRK10416 signal recognition pa 34.6 2.4E+02 0.0053 26.8 8.5 39 9-47 116-154 (318)
500 PF08323 Glyco_transf_5: Starc 34.5 34 0.00073 31.1 2.7 24 22-45 20-43 (245)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.3e-65 Score=504.11 Aligned_cols=448 Identities=38% Similarity=0.709 Sum_probs=356.3
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----------C---CceEEEcCCCCCC
Q 012645 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----------T---TVGVEPISDGFDE 66 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----------~---g~~~~~~~~~~~~ 66 (459)
|+.+.-+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+ . .++|..+|++++.
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC
Confidence 7777778999999999999999999999999999999999999975543321 1 2566667776655
Q ss_pred CCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhc
Q 012645 67 GGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINH 146 (459)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~ 146 (459)
+.. ...+...++..+.....+.+.++++++.....++++||+|.++.|+..+|+++|||++.+++++++.+..+.+...
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 81 DDP-RRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred Ccc-cccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 422 1223444555555556777888887764322345999999999999999999999999999999998888777655
Q ss_pred cCCCCCCCC-CCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCe
Q 012645 147 GLLTLPVNQ-ETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPL 225 (459)
Q Consensus 147 ~~~~~p~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 225 (459)
+..+.+... .+.++.+|++|.+...+++.++............+.+......+++++++|||.+||+...+.+....++
T Consensus 160 ~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v 239 (480)
T PLN02555 160 GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPI 239 (480)
T ss_pred cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCE
Confidence 432222111 1234568999988888888766432223344445555566677889999999999999988888654469
Q ss_pred eeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 012645 226 VMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVV 305 (459)
Q Consensus 226 ~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~ 305 (459)
+.|||+..... ... ...+...+. .++++.+||+.++++++|||||||+...+.+++.+++.+++..+.+|||++
T Consensus 240 ~~iGPl~~~~~----~~~-~~~~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 313 (480)
T PLN02555 240 KPVGPLFKMAK----TPN-SDVKGDISK-PADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVM 313 (480)
T ss_pred EEeCcccCccc----ccc-ccccccccc-cchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 99999975421 000 111122223 245699999999888899999999999999999999999999999999998
Q ss_pred eCCC-------CCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHH
Q 012645 306 KENE-------NKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKF 378 (459)
Q Consensus 306 ~~~~-------~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~r 378 (459)
.... ..+|+++.++.++|+++++|+||.+||+|++|++||||||+||++||+++|||||++|++.||+.||++
T Consensus 314 ~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 393 (480)
T PLN02555 314 RPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVY 393 (480)
T ss_pred ecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHH
Confidence 7321 357888988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEeeecC--CCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcC
Q 012645 379 VEEVWEVGVRAKKNR--AGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKADG 455 (459)
Q Consensus 379 v~~~~G~G~~~~~~~--~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~~~ 455 (459)
+++.||+|+.+.... .+.++.++|.++|+++|.+++++++|+||+++++.+++++.+||||..++++||+++.++.+
T Consensus 394 ~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~~ 472 (480)
T PLN02555 394 LVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKSV 472 (480)
T ss_pred HHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccc
Confidence 999889999994210 11689999999999999887788999999999999999999999999999999999987654
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-65 Score=497.71 Aligned_cols=437 Identities=45% Similarity=0.853 Sum_probs=344.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC---CCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA---TTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.. +++.++.+|++++....+...+...++..+
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~ 83 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQNF 83 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHHH
Confidence 45799999999999999999999999999999999999976554432 469999999887763222233455566666
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccC
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTL 162 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (459)
.....+.+.++++++.....+.|+||+|.+..|+..+|+++|||++.+++++++....+.+...... ...+.+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~-------~~~~~~ 156 (449)
T PLN02173 84 KTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNG-------SLTLPI 156 (449)
T ss_pred HHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccC-------CccCCC
Confidence 6566778888887764321234999999999999999999999999999988776655443221110 112348
Q ss_pred CCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCcccccccc
Q 012645 163 PGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIA 242 (459)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~ 242 (459)
|++|.+...+++.++............+.+......+++++++|||+++|+...+.+....+++.|||+.+.........
T Consensus 157 pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~ 236 (449)
T PLN02173 157 KDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIK 236 (449)
T ss_pred CCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhcccccc
Confidence 88888888888876643222222334444555667788999999999999998888865557999999975421111000
Q ss_pred CCccCCCCCCC-CChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhhc
Q 012645 243 GDSAYGANIWE-PTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVNSV 320 (459)
Q Consensus 243 ~~~~~g~~~~~-~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~~ 320 (459)
.+...+...|. ..++.+.+||+.++++++|||||||+.....+++.+++.++ .+.+|+|++.... ..+|++|.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~~~ 314 (449)
T PLN02173 237 SDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLETV 314 (449)
T ss_pred ccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHHhh
Confidence 01111112222 23445899999998899999999999999999999999999 6778999998544 56888888887
Q ss_pred -CCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecC-CCccc
Q 012645 321 -GETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNR-AGIVT 398 (459)
Q Consensus 321 -~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~-~~~~~ 398 (459)
++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+...+ ++.++
T Consensus 315 ~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~ 394 (449)
T PLN02173 315 DKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAK 394 (449)
T ss_pred cCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCccc
Confidence 6889999999999999999999999999999999999999999999999999999999998779999887542 11369
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012645 399 GEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLL 451 (459)
Q Consensus 399 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~ 451 (459)
.+.|.++++++|.+++++++|+||+++++++++++.+||||..++++|++++.
T Consensus 395 ~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 395 REEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99999999999998778899999999999999999999999999999999874
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.3e-64 Score=492.71 Aligned_cols=432 Identities=29% Similarity=0.485 Sum_probs=342.7
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc-C-CCCceEEEcCCCCCCCCCCCCCCHHHH
Q 012645 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI-H-ATTVGVEPISDGFDEGGFKQAPSVKAY 78 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (459)
|+.+..+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... . ..++.+..+|++++.+..+.. ....+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~-~~~~~ 79 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNL-GPIEF 79 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCccccccc-CHHHH
Confidence 77777888999999999999999999999999999999999998764211 1 147999999987765322221 23345
Q ss_pred HHHHHHhchHHHHHHHHHhhc-CCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCC---CCCCC
Q 012645 79 LESFKTVGSRTLAEVILKYKD-SESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLL---TLPVN 154 (459)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~-~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~---~~p~~ 154 (459)
+..+...+.+.+.++++++.. ...++++||+|.+..|+..+|+++|||++.+++++++.+..+.+...... ..|..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 555555556677777777642 22367999999999999999999999999999999887766655321111 01111
Q ss_pred C--CCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC--CCeeeecc
Q 012645 155 Q--ETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL--WPLVMIGP 230 (459)
Q Consensus 155 ~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~vgp 230 (459)
. .+....+|++|+++..+++..... ........+... ....+++++++|||++||+...+.+.+. .++++|||
T Consensus 160 ~~~~~~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGp 236 (451)
T PLN02410 160 EPKGQQNELVPEFHPLRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGP 236 (451)
T ss_pred ccccCccccCCCCCCCChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecc
Confidence 1 112345888887777777754321 111222222222 2346788999999999999999888653 36999999
Q ss_pred cCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-
Q 012645 231 LVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE- 309 (459)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~- 309 (459)
+..... . +...++ ...++.+||+.++++++|||||||....+.+.+.+++.+++.++.+|||++....
T Consensus 237 l~~~~~-----~-----~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~ 305 (451)
T PLN02410 237 LHLVAS-----A-----PTSLLE-ENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSV 305 (451)
T ss_pred cccccC-----C-----Cccccc-cchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcc
Confidence 975310 0 001122 2345789999998899999999999999999999999999999999999998431
Q ss_pred ------CCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhh
Q 012645 310 ------NKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVW 383 (459)
Q Consensus 310 ------~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~ 383 (459)
..+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.|
T Consensus 306 ~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 385 (451)
T PLN02410 306 RGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVW 385 (451)
T ss_pred cccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012645 384 EVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLL 451 (459)
Q Consensus 384 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~ 451 (459)
|+|+.+. . .++.++|.++|+++|.++++++|++|++++++++++++.+||||..++++|++.+.
T Consensus 386 ~~G~~~~-~---~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 386 KIGIQVE-G---DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred CeeEEeC-C---cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999997 3 79999999999999988767899999999999999999999999999999999875
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.9e-63 Score=485.39 Aligned_cols=428 Identities=29% Similarity=0.501 Sum_probs=334.4
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----CCceEEEcCCCCCCCCCCCCCCH
Q 012645 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----TTVGVEPISDGFDEGGFKQAPSV 75 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 75 (459)
|++. .+.||+++|++++||++|++.||+.|+.+|++|||++++.+...+.+ +++.++.+|++++.+. ..+.
T Consensus 1 ~~~~-~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~---~~~~ 76 (448)
T PLN02562 1 MKVT-QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP---PRDF 76 (448)
T ss_pred CCCC-CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc---cccH
Confidence 4442 34699999999999999999999999999999999999987654443 3799999997665321 1233
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhcc----CCCC
Q 012645 76 KAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHG----LLTL 151 (459)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~----~~~~ 151 (459)
..+...+...+.+.+.++++++... .++++||+|.+..|+..+|+++|||++.++++++..+..+.+.... ....
T Consensus 77 ~~l~~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 77 FSIENSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 3444444445677888888876432 2458999999999999999999999999999988777765544311 1111
Q ss_pred CCCCC--CCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhc------CC
Q 012645 152 PVNQE--TVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLG------LW 223 (459)
Q Consensus 152 p~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~ 223 (459)
..... .....+|++|.+...+++.++............+.+......+++++++|||.+||+...+.... .+
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 00000 11125888887888888876532221223345555666667778999999999999877765532 25
Q ss_pred CeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcc-cCCHHHHHHHHHHHHhCCCcEE
Q 012645 224 PLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMA-DIAANQVDEIARGLKASEKPFL 302 (459)
Q Consensus 224 ~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~i~~a~~~~~~~~v 302 (459)
+++.|||+..... ....+...+.. +.++.+||+.++++++|||||||+. ..+.+++.+++.+++.++.+||
T Consensus 236 ~v~~iGpl~~~~~-------~~~~~~~~~~~-~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fi 307 (448)
T PLN02562 236 QILQIGPLHNQEA-------TTITKPSFWEE-DMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFI 307 (448)
T ss_pred CEEEecCcccccc-------cccCCCccccc-hHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 6999999975410 00001111122 3457799999988899999999986 5788999999999999999999
Q ss_pred EEEeCCC-CCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHH
Q 012645 303 WVVKENE-NKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEE 381 (459)
Q Consensus 303 ~~~~~~~-~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~ 381 (459)
|++.... +.+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++
T Consensus 308 W~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~ 387 (448)
T PLN02562 308 WVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVD 387 (448)
T ss_pred EEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHH
Confidence 9997543 468889988999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012645 382 VWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRL 450 (459)
Q Consensus 382 ~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l 450 (459)
.||+|+.+. ..+.++|.++|+++|.|+ +|++||+++++++.++ .+||||.+++++|++++
T Consensus 388 ~~g~g~~~~-----~~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 388 VWKIGVRIS-----GFGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred HhCceeEeC-----CCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 559997774 689999999999999988 9999999999999887 66799999999999986
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=8.5e-63 Score=484.68 Aligned_cols=437 Identities=34% Similarity=0.611 Sum_probs=335.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEecCccccccCC-----CCceEEEcCCCCCCCCCCCCCCHHH
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKR--LASKRVKATLATTHYTVKSIHA-----TTVGVEPISDGFDEGGFKQAPSVKA 77 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~--L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (459)
..+.||+++|+++.||++|++.||+. |+++|++|||++++.+.+.++. .++++..+|++++++.. .+...
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~---~~~~~ 82 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP---RAPET 82 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc---cCHHH
Confidence 34579999999999999999999999 5699999999999987766543 25777777776665431 23334
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCC-
Q 012645 78 YLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQE- 156 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 156 (459)
++..+.+.+.+.+.+++++. ++|+||+|.++.|+..+|+++|||++.+++.++..+....+........+....
T Consensus 83 ~~~~~~~~~~~~l~~~l~~~-----~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEEK-----RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDL 157 (456)
T ss_pred HHHHHHHhhhHHHHHHHhcC-----CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCccccc
Confidence 45545444455566666542 799999999999999999999999999999888877776654322212221110
Q ss_pred CCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCcc
Q 012645 157 TVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAY 236 (459)
Q Consensus 157 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~ 236 (459)
...+.+|++|.+...+++..+..... ........+.......++++++|||.++|+...+.+...+++++|||+++...
T Consensus 158 ~~~~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~ 236 (456)
T PLN02210 158 NQTVELPALPLLEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFL 236 (456)
T ss_pred CCeeeCCCCCCCChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhh
Confidence 12345888887788888765543211 11222333333445667899999999999988888766557999999975311
Q ss_pred cc-ccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-CCCch
Q 012645 237 LD-QQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE-NKLPV 314 (459)
Q Consensus 237 ~~-~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~ 314 (459)
.. .........+...|. .++++.+||+.++++++|||||||......+++++++.+++.++.+|||+++... ...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~ 315 (456)
T PLN02210 237 LGDDEEETLDGKNLDMCK-SDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQ 315 (456)
T ss_pred cCcccccccccccccccc-cchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchh
Confidence 00 000000011111233 3566899999998889999999999988999999999999999999999997532 22344
Q ss_pred hhhhhc-CCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecC
Q 012645 315 EFVNSV-GETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNR 393 (459)
Q Consensus 315 ~~~~~~-~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 393 (459)
.+.++. ++++++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+....
T Consensus 316 ~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~ 395 (456)
T PLN02210 316 VLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDA 395 (456)
T ss_pred hHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccc
Confidence 566565 4888889999999999999999999999999999999999999999999999999999998339999986431
Q ss_pred -CCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012645 394 -AGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLL 451 (459)
Q Consensus 394 -~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~ 451 (459)
.+.++.++|.++|+++|.+++++++|+||+++++.+++++++||||..++++|++++.
T Consensus 396 ~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 396 VDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred cCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 1268999999999999998777789999999999999999999999999999999985
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.3e-62 Score=478.07 Aligned_cols=432 Identities=39% Similarity=0.721 Sum_probs=337.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEecCcc-cc-ccC---C-CCceEEEcCCCCCCCCCCCCCCHHH
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLAS-KRVKATLATTHYT-VK-SIH---A-TTVGVEPISDGFDEGGFKQAPSVKA 77 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~~~-~~-~~~---~-~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (459)
|.+.||+++|+++.||++|++.||+.|+. +|+.|||++++.+ .. .+. . +++.|+.++++++.+......+...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~ 80 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQN 80 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHH
Confidence 45679999999999999999999999996 7999999999853 21 121 1 3699999998776643222234445
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCC
Q 012645 78 YLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQET 157 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 157 (459)
++......+.+.+.++++++.....++++||+|.+..|+..+|+++|||++.+++++++.++.+++...+..
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~-------- 152 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNN-------- 152 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCC--------
Confidence 555566667788888888764322356999999999999999999999999999999988887776543211
Q ss_pred CcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccC--CceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCc
Q 012645 158 VPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNK--NDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSA 235 (459)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~ 235 (459)
..+.+|++|.+..++++.++............+.+......+ ++++++|||++||+...+.+.. .+++.|||+.+..
T Consensus 153 ~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~v~~VGPL~~~~ 231 (455)
T PLN02152 153 SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-IEMVAVGPLLPAE 231 (455)
T ss_pred CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-CCEEEEcccCccc
Confidence 123489988888888888664322222233344444443332 4699999999999998888865 3699999997542
Q ss_pred cccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC------
Q 012645 236 YLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE------ 309 (459)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~------ 309 (459)
..... ....+... .+.+.++.+||+.++++++|||||||+...+.+++.+++.+++.++.+|||++....
T Consensus 232 ~~~~~---~~~~~~~~-~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~ 307 (455)
T PLN02152 232 IFTGS---ESGKDLSV-RDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKI 307 (455)
T ss_pred ccccc---ccCccccc-cccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccc
Confidence 10000 00000011 122457999999998889999999999999999999999999999999999997521
Q ss_pred ---C----CCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHh
Q 012645 310 ---N----KLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEV 382 (459)
Q Consensus 310 ---~----~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~ 382 (459)
. .++++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.
T Consensus 308 ~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~ 387 (455)
T PLN02152 308 EGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEI 387 (455)
T ss_pred ccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHH
Confidence 0 236788888999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012645 383 WEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRL 450 (459)
Q Consensus 383 ~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l 450 (459)
||+|..+.....+..+.++|.++|+++|+|+ +.+||+||+++++.++++..+||||..++++|++++
T Consensus 388 ~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 388 WKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred hCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6778777532212469999999999999754 447999999999999999999999999999999986
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.6e-62 Score=476.90 Aligned_cols=434 Identities=25% Similarity=0.429 Sum_probs=331.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEecCcccc-----ccC-----CCCceEEEcCCCCCCCCCCCC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKR--VKATLATTHYTVK-----SIH-----ATTVGVEPISDGFDEGGFKQA 72 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~-----~~~-----~~g~~~~~~~~~~~~~~~~~~ 72 (459)
|++.||+++|+++.||++|++.||+.|+.+| ..|||++++.... .+. .+++.|+.+|+..........
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 5678999999999999999999999999998 9999999986541 111 136999999854321110112
Q ss_pred CCHHHHHHHHHHhc----hHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccC
Q 012645 73 PSVKAYLESFKTVG----SRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGL 148 (459)
Q Consensus 73 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 148 (459)
.+....+....... .+.+.+++++......++++||+|.++.|+..+|+++|||++.++++++..++.+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 23443333333333 33445555443211123499999999999999999999999999999988777766654322
Q ss_pred CCC---CCCCCCCcccCCCC-CCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhc---
Q 012645 149 LTL---PVNQETVPLTLPGL-PSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLG--- 221 (459)
Q Consensus 149 ~~~---p~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 221 (459)
.+. +....+..+.+|++ |++...+++.++..... ...+.+......+++++++||++++|++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~ 236 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQN 236 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccC
Confidence 211 10011123568998 57888888876642221 22333444456778999999999999988777743
Q ss_pred CCCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 012645 222 LWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPF 301 (459)
Q Consensus 222 ~~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~ 301 (459)
.++++.|||+..... .+.+ .... ..++++.+||+.++++++|||||||....+.+++++++.+++.++++|
T Consensus 237 ~p~v~~VGPl~~~~~--~~~~-----~~~~--~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 237 YPSVYAVGPIFDLKA--QPHP-----EQDL--ARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred CCcEEEecCCccccc--CCCC-----cccc--chhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 357999999975410 0000 0001 123569999999988899999999999999999999999999999999
Q ss_pred EEEEeCCC----CCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHH
Q 012645 302 LWVVKENE----NKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAK 377 (459)
Q Consensus 302 v~~~~~~~----~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~ 377 (459)
||++.... +.+|++|.++.++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 308 lW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 387 (468)
T PLN02207 308 LWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAF 387 (468)
T ss_pred EEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHH
Confidence 99998532 45889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceEEeeec----CCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012645 378 FVEEVWEVGVRAKKN----RAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLK 452 (459)
Q Consensus 378 rv~~~~G~G~~~~~~----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~ 452 (459)
++++.||+|+.+... ..+.++.++|.++|+++|.+ ++++||+||+++++.+++++.+||||..++++|++++..
T Consensus 388 ~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 388 LMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 988844999877421 01146999999999999973 245999999999999999999999999999999999875
No 8
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-62 Score=485.35 Aligned_cols=427 Identities=28% Similarity=0.483 Sum_probs=329.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEecCccccc-------c---C---CCCceEEEcCCCCCCCCCCC
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKR--VKATLATTHYTVKS-------I---H---ATTVGVEPISDGFDEGGFKQ 71 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~~-------~---~---~~g~~~~~~~~~~~~~~~~~ 71 (459)
|+||+++|+++.||++|++.||+.|+.+| ..|||++++.+... + . .++++++.+|++.+... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-E- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-c-
Confidence 68999999999999999999999999998 88999999866331 1 1 23689999986643211 1
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhcCC-CCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCC
Q 012645 72 APSVKAYLESFKTVGSRTLAEVILKYKDSE-SPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLT 150 (459)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 150 (459)
.......+..+...+.+.+++++++..... .+.++||+|.++.|+..+|+++|||++.+++++++.++.+.+.+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~ 159 (481)
T PLN02554 80 DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDE 159 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccc
Confidence 112222333333333444444443321111 1248999999999999999999999999999999988887776532211
Q ss_pred --CC---CCCCCCcccCCCCC-CCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhc---
Q 012645 151 --LP---VNQETVPLTLPGLP-SLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLG--- 221 (459)
Q Consensus 151 --~p---~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 221 (459)
.+ ......++.+|+++ +++..+++..... ..+...+.+......+++++++|++.++|+.....+.+
T Consensus 160 ~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~ 235 (481)
T PLN02554 160 KKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSG 235 (481)
T ss_pred cccCccccCCCCceeECCCCCCCCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhccc
Confidence 11 01111235689884 6777777765432 12334455556667789999999999999988888864
Q ss_pred -CCCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 012645 222 -LWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKP 300 (459)
Q Consensus 222 -~~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~ 300 (459)
.++++.|||++.... .. . + . ....++++.+||+.++++++|||||||+...+.+++.+++.+++.++++
T Consensus 236 ~~~~v~~vGpl~~~~~----~~-~---~-~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 236 DLPPVYPVGPVLHLEN----SG-D---D-S-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred CCCCEEEeCCCccccc----cc-c---c-c-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCC
Confidence 357999999943210 00 0 0 0 0124567999999998889999999999888999999999999999999
Q ss_pred EEEEEeCCC---------------CCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeec
Q 012645 301 FLWVVKENE---------------NKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVA 365 (459)
Q Consensus 301 ~v~~~~~~~---------------~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li 365 (459)
|||+++... ..+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||+
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~ 385 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAA 385 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEe
Confidence 999997520 23588999899999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHH-HHHHhhhceEEeeec--------CCCcccHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHHhc
Q 012645 366 VPQFSDQPTNAK-FVEEVWEVGVRAKKN--------RAGIVTGEELNKCVNEVMD-GERSQKIKRNVSKWREFAKKAVSA 435 (459)
Q Consensus 366 ~P~~~DQ~~na~-rv~~~~G~G~~~~~~--------~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~ 435 (459)
+|+++||+.||+ +++++ |+|+.+... ..+.++.++|.++|+++|. |+ +||+||+++++.+++++.+
T Consensus 386 ~P~~~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 386 WPLYAEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVRKRVKEMSEKCHVALMD 461 (481)
T ss_pred cCccccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcC
Confidence 999999999995 57777 999998631 0126899999999999997 55 9999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 012645 436 GGSSDKNIDEFVVRLLKA 453 (459)
Q Consensus 436 ~g~s~~~~~~~~~~l~~~ 453 (459)
||||..++++|++++.++
T Consensus 462 gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 462 GGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 999999999999999875
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.6e-61 Score=473.83 Aligned_cols=421 Identities=27% Similarity=0.454 Sum_probs=329.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCcccccc-----CCCCceEEEcCC----CCCCCCCCCCCCH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKSI-----HATTVGVEPISD----GFDEGGFKQAPSV 75 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~~-----~~~g~~~~~~~~----~~~~~~~~~~~~~ 75 (459)
.+.||+++|++++||++|++.||+.|+ ++|+.|||++++.+...+ ...++.++.+|. ++++. . .+.
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~---~-~~~ 79 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDP---S-AHV 79 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCC---C-ccH
Confidence 467999999999999999999999998 799999999999775433 123688998884 22211 1 122
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCC-
Q 012645 76 KAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVN- 154 (459)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~- 154 (459)
...+......+.+.++++++++. .+|++||+|.++.|+..+|+++|||++.+++++++.++...+.+....+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~ 156 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH 156 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc
Confidence 22333333445567777776642 36899999999999999999999999999999988776655443211111100
Q ss_pred -CCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC--------CCe
Q 012645 155 -QETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL--------WPL 225 (459)
Q Consensus 155 -~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~ 225 (459)
....++.+|++|+++..+++..+.... ......+.+......+++++++|||.+||+...+.+.+. +++
T Consensus 157 ~~~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v 234 (481)
T PLN02992 157 TVQRKPLAMPGCEPVRFEDTLDAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPV 234 (481)
T ss_pred ccCCCCcccCCCCccCHHHhhHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCce
Confidence 001234589988788778875332211 123344445555667789999999999999988887531 469
Q ss_pred eeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 012645 226 VMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVV 305 (459)
Q Consensus 226 ~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~ 305 (459)
+.|||+++.. . ....++++.+||+.++++++|||||||....+.+++.+++.+++.++.+|||++
T Consensus 235 ~~VGPl~~~~---~------------~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~ 299 (481)
T PLN02992 235 YPIGPLCRPI---Q------------SSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVV 299 (481)
T ss_pred EEecCccCCc---C------------CCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999997541 0 011245689999999889999999999999999999999999999999999999
Q ss_pred eCC------------------C---CCCchhhhhhcCCCce-EEeeecHHHHhcccCccceeccCchhhHHHhhhcCCee
Q 012645 306 KEN------------------E---NKLPVEFVNSVGETGL-VVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAV 363 (459)
Q Consensus 306 ~~~------------------~---~~~~~~~~~~~~~~v~-v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 363 (459)
... + ..+|++|.+++.++.. +.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 300 r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~ 379 (481)
T PLN02992 300 RPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPM 379 (481)
T ss_pred eCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCE
Confidence 521 0 2478889888876654 45999999999999999999999999999999999999
Q ss_pred eccccccchhhHHHHHH-HhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHh--cCCCcH
Q 012645 364 VAVPQFSDQPTNAKFVE-EVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVS--AGGSSD 440 (459)
Q Consensus 364 li~P~~~DQ~~na~rv~-~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~--~~g~s~ 440 (459)
|++|++.||+.||++++ ++ |+|+.++.. ++.++.++|.++|+++|.+++++.++++++++++.+++++. +||||.
T Consensus 380 l~~P~~~DQ~~na~~~~~~~-g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~ 457 (481)
T PLN02992 380 IAWPLFAEQNMNAALLSDEL-GIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAH 457 (481)
T ss_pred EecCccchhHHHHHHHHHHh-CeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999995 77 999999752 11589999999999999887778999999999999999994 599999
Q ss_pred HHHHHHHHHHHH
Q 012645 441 KNIDEFVVRLLK 452 (459)
Q Consensus 441 ~~~~~~~~~l~~ 452 (459)
..+++|++++.+
T Consensus 458 ~~l~~~v~~~~~ 469 (481)
T PLN02992 458 ESLCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999999999865
No 10
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2e-61 Score=478.31 Aligned_cols=434 Identities=34% Similarity=0.582 Sum_probs=337.1
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC----CCceEEEcCCCCCCCCCCCCCCHHH
Q 012645 4 QRERVHVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA----TTVGVEPISDGFDEGGFKQAPSVKA 77 (459)
Q Consensus 4 ~~~~~kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (459)
+..+.||+++|+|+.||++|++.||++|+++ ||+|||++++.+...++. .|++|+.+|++++... ....+...
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~-~~~~~~~~ 85 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSEL-VRAADFPG 85 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCcc-ccccCHHH
Confidence 3567899999999999999999999999999 999999999998777666 3899999997555432 11234445
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCC--CCCCCC
Q 012645 78 YLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLL--TLPVNQ 155 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~--~~p~~~ 155 (459)
++..+.+.+.+.++++++++. .++|+||+|.++.|+..+|+++|||++.++++++..++.+.+...... ..+...
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (459)
T PLN02448 86 FLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVEL 162 (459)
T ss_pred HHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCcc
Confidence 555555456667777777653 368999999999999999999999999999999876666555431110 011110
Q ss_pred ---CCC-cccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC--CCeeeec
Q 012645 156 ---ETV-PLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL--WPLVMIG 229 (459)
Q Consensus 156 ---~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~vg 229 (459)
... ...+|+++.+...+++.+.... .....+.+.+......+++++++||+++||+...+.+.+. ++++.||
T Consensus 163 ~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iG 240 (459)
T PLN02448 163 SESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIG 240 (459)
T ss_pred ccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEec
Confidence 001 1137887777777777655422 1223344455555566778999999999999888888654 3699999
Q ss_pred ccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 012645 230 PLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE 309 (459)
Q Consensus 230 p~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~ 309 (459)
|+.+...... .. .+.. ....+.++.+|++.++++++|||||||+.....+++++++++++..+.+|||++...
T Consensus 241 P~~~~~~~~~----~~-~~~~-~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~- 313 (459)
T PLN02448 241 PSIPYMELKD----NS-SSSN-NEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE- 313 (459)
T ss_pred CcccccccCC----Cc-cccc-cccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc-
Confidence 9976421000 00 0000 011234689999999889999999999988888999999999999999999987532
Q ss_pred CCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEe
Q 012645 310 NKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRA 389 (459)
Q Consensus 310 ~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~ 389 (459)
..++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|..+
T Consensus 314 ---~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~ 390 (459)
T PLN02448 314 ---ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRV 390 (459)
T ss_pred ---hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEE
Confidence 22455556678999999999999999999999999999999999999999999999999999999999866999888
Q ss_pred eecC--CCcccHHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012645 390 KKNR--AGIVTGEELNKCVNEVMDGE--RSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKA 453 (459)
Q Consensus 390 ~~~~--~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~ 453 (459)
.... .+..++++|+++++++|.++ ++++||+||+++++.+++++.+||||..++++|++++.+.
T Consensus 391 ~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 391 KREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred ecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 6321 12579999999999999863 5779999999999999999999999999999999999753
No 11
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.5e-61 Score=475.58 Aligned_cols=438 Identities=26% Similarity=0.403 Sum_probs=328.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----CCceEEEcC----CCCCCCCCCCCC--
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----TTVGVEPIS----DGFDEGGFKQAP-- 73 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~----~~~~~~~~~~~~-- 73 (459)
..++||+++|++++||++|++.||+.|+.+|+.|||++++.+...++. +++.++.+| ++++++......
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~ 86 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLP 86 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcc
Confidence 356899999999999999999999999999999999999987655433 357777654 133333211111
Q ss_pred -CHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCC
Q 012645 74 -SVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLP 152 (459)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p 152 (459)
+....+........+.+.+++++. ..++++||+|.+..|+..+|+++|||++.+++++++.++.+.+..... +..
T Consensus 87 ~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~-~~~ 162 (477)
T PLN02863 87 PSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM-PTK 162 (477)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc-ccc
Confidence 111122222223344455555442 236799999999999999999999999999999999888877765322 111
Q ss_pred C--CCCCCc---ccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC---CC
Q 012645 153 V--NQETVP---LTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL---WP 224 (459)
Q Consensus 153 ~--~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~ 224 (459)
. ...... ..+|++|.++..+++.++............+.+.......++++++|||+++|+...+.+... ++
T Consensus 163 ~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 242 (477)
T PLN02863 163 INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDR 242 (477)
T ss_pred ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCC
Confidence 0 000111 137888888888888765432222223344444444445677899999999999999888653 46
Q ss_pred eeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEE
Q 012645 225 LVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWV 304 (459)
Q Consensus 225 ~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~ 304 (459)
++.|||+++... ... .....|...+. .++++.+||+.++++++|||||||+.....+++.+++.+++.++++|||+
T Consensus 243 v~~IGPL~~~~~-~~~--~~~~~~~~~~~-~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~ 318 (477)
T PLN02863 243 VWAVGPILPLSG-EKS--GLMERGGPSSV-SVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWC 318 (477)
T ss_pred eEEeCCCccccc-ccc--cccccCCcccc-cHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEE
Confidence 999999975411 000 00011111111 24679999999988999999999999888999999999999999999999
Q ss_pred EeCCC------CCCchhhhhhcCC-CceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHH
Q 012645 305 VKENE------NKLPVEFVNSVGE-TGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAK 377 (459)
Q Consensus 305 ~~~~~------~~~~~~~~~~~~~-~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~ 377 (459)
++... ..+|++|.+++.+ ++++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.||+
T Consensus 319 ~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 398 (477)
T PLN02863 319 VKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNAS 398 (477)
T ss_pred ECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHH
Confidence 97432 3578888877654 4556699999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceEEeeecCCCcccHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012645 378 FVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMD-GERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKA 453 (459)
Q Consensus 378 rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~ 453 (459)
++++.||+|+.+.....+..+.+++.++++++|. +. +||+||+++++.+++++.+||||..++++|++++.+.
T Consensus 399 ~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~---~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 399 LLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQ---VERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 9876559999885421124689999999999994 44 9999999999999999999999999999999999753
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=9.2e-61 Score=473.25 Aligned_cols=431 Identities=28% Similarity=0.432 Sum_probs=335.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEecCcccc----c----c---CC--CCceEEEcCCCCCCC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKR----VKATLATTHYTVK----S----I---HA--TTVGVEPISDGFDEG 67 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~G----h~V~~~~~~~~~~----~----~---~~--~g~~~~~~~~~~~~~ 67 (459)
|+|.||+++|++++||++|++.||+.|+.+| +.|||++++.... . + .. .++.++.+|+.....
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 5678999999999999999999999999997 7899999875422 1 1 11 258999998653221
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhcc
Q 012645 68 GFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHG 147 (459)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~ 147 (459)
...+...++..+.....+.++++++.+ ..++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+..
T Consensus 81 ---~~e~~~~~~~~~~~~~~~~l~~~L~~l---~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 81 ---DAAGVEEFISRYIQLHAPHVRAAIAGL---SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred ---ccccHHHHHHHHHHhhhHHHHHHHHhc---CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 112333444445555666777777665 12569999999999999999999999999999999888877766432
Q ss_pred CCCCC--CCCCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC---
Q 012645 148 LLTLP--VNQETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL--- 222 (459)
Q Consensus 148 ~~~~p--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 222 (459)
....+ ....+.++.+|++|.++..+++........ .....+........+++++++|||++||+...+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~--~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 232 (480)
T PLN00164 155 DEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKS--PNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCT 232 (480)
T ss_pred cccccCcccccCcceecCCCCCCChHHCCchhcCCCc--HHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccc
Confidence 21111 111112345899988888888875543211 11233334445567789999999999999988888652
Q ss_pred -----CCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 012645 223 -----WPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS 297 (459)
Q Consensus 223 -----~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~ 297 (459)
++++.|||+..... . . .. ...++++.+||+.++++++|||||||+.....+++.+++.+++.+
T Consensus 233 ~~~~~~~v~~vGPl~~~~~--~--~-------~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s 300 (480)
T PLN00164 233 PGRPAPTVYPIGPVISLAF--T--P-------PA-EQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERS 300 (480)
T ss_pred ccCCCCceEEeCCCccccc--c--C-------CC-ccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 46999999974310 0 0 00 123567999999998899999999999888888999999999999
Q ss_pred CCcEEEEEeCCC-------------CCCchhhhhhcCCCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCee
Q 012645 298 EKPFLWVVKENE-------------NKLPVEFVNSVGETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAV 363 (459)
Q Consensus 298 ~~~~v~~~~~~~-------------~~~~~~~~~~~~~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 363 (459)
+.+|||++.... ..+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++||||
T Consensus 301 ~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~ 380 (480)
T PLN00164 301 GHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPM 380 (480)
T ss_pred CCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCE
Confidence 999999997421 237788888887777666 999999999999999999999999999999999999
Q ss_pred eccccccchhhHHHHHHHhhhceEEeeecC--CCcccHHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHHHHhcCCCc
Q 012645 364 VAVPQFSDQPTNAKFVEEVWEVGVRAKKNR--AGIVTGEELNKCVNEVMDGE--RSQKIKRNVSKWREFAKKAVSAGGSS 439 (459)
Q Consensus 364 li~P~~~DQ~~na~rv~~~~G~G~~~~~~~--~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~s 439 (459)
|++|+++||+.||+++++.||+|+.+.... ++.++.++|.++|+++|.++ +++.+|+||+++++.+++++.+||||
T Consensus 381 l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS 460 (480)
T PLN00164 381 APWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSS 460 (480)
T ss_pred EeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 999999999999998865449999985321 11479999999999999874 36789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 012645 440 DKNIDEFVVRLLKADG 455 (459)
Q Consensus 440 ~~~~~~~~~~l~~~~~ 455 (459)
..++++|++++.+.+-
T Consensus 461 ~~~l~~~v~~~~~~~~ 476 (480)
T PLN00164 461 YAALQRLAREIRHGAV 476 (480)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987653
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.4e-60 Score=464.45 Aligned_cols=426 Identities=26% Similarity=0.412 Sum_probs=328.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEecCcccccc------CC----CCceEEEcCCCCCCCCCCCCC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASK-RVKATLATTHYTVKSI------HA----TTVGVEPISDGFDEGGFKQAP 73 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~~~~~~~------~~----~g~~~~~~~~~~~~~~~~~~~ 73 (459)
|-+.||+++|+++.||++|++.||+.|+.+ |..|||++++.....+ .. .++.++.+|....++......
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 345799999999999999999999999977 9999999877543221 11 258899998432221101001
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCc-eEEEccchHHHHHHHHHhhccCCCCC
Q 012645 74 SVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIY-GAAMMTNSASVCSMYWQINHGLLTLP 152 (459)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~p 152 (459)
+....+......+.+.++++++++. .++++||+|.++.|+..+|+++||| .+.+++++++......+.+......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 3333334444466777888887763 2679999999999999999999999 57777777666655554432111111
Q ss_pred CC--CCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC--------
Q 012645 153 VN--QETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL-------- 222 (459)
Q Consensus 153 ~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------- 222 (459)
.. ....++.+|++|++...+++..+.... ... ...+.+......+++++++|||++||+...+.+.+.
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~-~~~-~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~ 235 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDRS-DQQ-YKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMK 235 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCCC-cHH-HHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccC
Confidence 10 001235689998888888886553221 111 233334555677899999999999999998888653
Q ss_pred CCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 012645 223 WPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFL 302 (459)
Q Consensus 223 ~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v 302 (459)
++++.|||+.+.- .....++++.+|||.++++++|||||||....+.+++.+++.+|+.++++||
T Consensus 236 ~~v~~VGPl~~~~---------------~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 236 VPVYPIGPIVRTN---------------VHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred CceEEecCCCCCc---------------ccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 4699999997420 0112245799999999889999999999999999999999999999999999
Q ss_pred EEEeCC-------------C-CCCchhhhhhcCCCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccc
Q 012645 303 WVVKEN-------------E-NKLPVEFVNSVGETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVP 367 (459)
Q Consensus 303 ~~~~~~-------------~-~~~~~~~~~~~~~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P 367 (459)
|++... . +.+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc
Confidence 999631 1 358889998888887655 9999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHhhhceEEeeec-CCCcccHHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 012645 368 QFSDQPTNAKFVEEVWEVGVRAKKN-RAGIVTGEELNKCVNEVMDG--ERSQKIKRNVSKWREFAKKAVSAGGSSDKNID 444 (459)
Q Consensus 368 ~~~DQ~~na~rv~~~~G~G~~~~~~-~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~ 444 (459)
++.||+.||+++++.||+|+.+... ..+.++.++|.++|+++|.+ ++++++|+||+++++.+++++.+||||..+++
T Consensus 381 ~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~ 460 (470)
T PLN03015 381 LYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLF 460 (470)
T ss_pred cccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999996666999999521 11268999999999999962 45789999999999999999999999999999
Q ss_pred HHHHHH
Q 012645 445 EFVVRL 450 (459)
Q Consensus 445 ~~~~~l 450 (459)
+|++++
T Consensus 461 ~~~~~~ 466 (470)
T PLN03015 461 EWAKRC 466 (470)
T ss_pred HHHHhc
Confidence 999886
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-60 Score=465.92 Aligned_cols=420 Identities=25% Similarity=0.444 Sum_probs=322.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EecCccccc----cC-----CCCceEEEcCCCCCCCCC-C
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKR--VKATL--ATTHYTVKS----IH-----ATTVGVEPISDGFDEGGF-K 70 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~G--h~V~~--~~~~~~~~~----~~-----~~g~~~~~~~~~~~~~~~-~ 70 (459)
|.+.||+++|++++||++|++.||+.|+.+| +.|++ .+++.+... ++ .++++++.+|+..+.... .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 3457999999999999999999999999998 45555 444432211 11 147999999866432111 1
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCC
Q 012645 71 QAPSVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLT 150 (459)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 150 (459)
...+....+..........+.++++++.. ..++++||+|.+..|+..+|+++|||++.+++++++.++.+.+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 11223333333444566677777777632 12469999999999999999999999999999999888888775432211
Q ss_pred CCCC--CCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC---CCe
Q 012645 151 LPVN--QETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL---WPL 225 (459)
Q Consensus 151 ~p~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~ 225 (459)
.+.. ....++.+|++|.+...+++.+..... ......+.+......+++++++|||++||+...+.+... +++
T Consensus 160 ~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v 237 (451)
T PLN03004 160 TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNI 237 (451)
T ss_pred ccccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCE
Confidence 1111 111235689998888888887654321 223344455555667788999999999999998888652 469
Q ss_pred eeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 012645 226 VMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVV 305 (459)
Q Consensus 226 ~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~ 305 (459)
+.|||++... ... + + . ...+.++.+||+.++++++|||||||+...+.+++++++.+|+.++++|||++
T Consensus 238 ~~vGPl~~~~----~~~-~---~-~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~ 306 (451)
T PLN03004 238 YPIGPLIVNG----RIE-D---R-N--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVV 306 (451)
T ss_pred EEEeeeccCc----ccc-c---c-c--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999997431 000 0 0 0 11235689999999889999999999999999999999999999999999999
Q ss_pred eCC--------C--CCCchhhhhhcCC-CceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhh
Q 012645 306 KEN--------E--NKLPVEFVNSVGE-TGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPT 374 (459)
Q Consensus 306 ~~~--------~--~~~~~~~~~~~~~-~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~ 374 (459)
... . +.+|++|.+++.+ ++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.
T Consensus 307 r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 307 RNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred cCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 853 1 2378899988875 5566799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 012645 375 NAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDK 441 (459)
Q Consensus 375 na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~ 441 (459)
||+++++.||+|+.+...+.+.++.++|.++|+++|+|+ +|++|++++++..++++++||||..
T Consensus 387 na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 387 NRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999998644999999753112579999999999999987 9999999999999999999999864
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.3e-60 Score=464.29 Aligned_cols=434 Identities=24% Similarity=0.398 Sum_probs=327.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC------CCceEEEcC----CCCCCCCCCCCCCH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA------TTVGVEPIS----DGFDEGGFKQAPSV 75 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~------~g~~~~~~~----~~~~~~~~~~~~~~ 75 (459)
.+.||+++|++++||++|++.||+.|+.+|..|||++++.+...+.. .+++++.+| ++++.+... ..+.
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~-~~~~ 83 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAES-STDV 83 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccc-cccc
Confidence 45799999999999999999999999999999999999987644431 368899887 455543211 1122
Q ss_pred ----HHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhc--cCC
Q 012645 76 ----KAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINH--GLL 149 (459)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~--~~~ 149 (459)
..++....+.+.+.++++++++ ++++||+|.+..|+..+|+++|||++.++++++..++.+.+... ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 1233344445566677777654 68999999999999999999999999999999887777553321 110
Q ss_pred CCCCCCCCCcccCCCCCC------CCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC-
Q 012645 150 TLPVNQETVPLTLPGLPS------LASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL- 222 (459)
Q Consensus 150 ~~p~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 222 (459)
..+... .....+|++++ +...+++.+.............+.+......+++++++|||.+||+...+.+.+.
T Consensus 159 ~~~~~~-~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~ 237 (472)
T PLN02670 159 DLRSTA-EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLY 237 (472)
T ss_pred cCCCcc-ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhh
Confidence 111100 00011444321 2334566554322111112233334444566789999999999999999888664
Q ss_pred -CCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 012645 223 -WPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPF 301 (459)
Q Consensus 223 -~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~ 301 (459)
.+++.|||+.+... .. .. +. ......++++.+||+.++++++|||||||+...+.+++.+++.+++.++++|
T Consensus 238 ~~~v~~VGPl~~~~~-~~-~~-~~----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~F 310 (472)
T PLN02670 238 RKPIIPIGFLPPVIE-DD-EE-DD----TIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPF 310 (472)
T ss_pred CCCeEEEecCCcccc-cc-cc-cc----ccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 46999999975310 00 00 00 0000123569999999988899999999999999999999999999999999
Q ss_pred EEEEeCCC-------CCCchhhhhhcCCCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchh
Q 012645 302 LWVVKENE-------NKLPVEFVNSVGETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQP 373 (459)
Q Consensus 302 v~~~~~~~-------~~~~~~~~~~~~~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~ 373 (459)
||++.... ..+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 311 lWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 311 FWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred EEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 99998531 258899998888877765 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhceEEeeecC-CCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012645 374 TNAKFVEEVWEVGVRAKKNR-AGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLK 452 (459)
Q Consensus 374 ~na~rv~~~~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~ 452 (459)
.||++++++ |+|+.+...+ .+.++.++|.++|+++|.+++|++||+||+++++.+++ .+....++++|++.+.+
T Consensus 391 ~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 391 LNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHH
Confidence 999999998 9999997531 12589999999999999887677999999999999986 47778999999999998
Q ss_pred hcCCCC
Q 012645 453 ADGKSL 458 (459)
Q Consensus 453 ~~~~~~ 458 (459)
..+..+
T Consensus 466 ~~~~~~ 471 (472)
T PLN02670 466 NRSSRL 471 (472)
T ss_pred hccccC
Confidence 775443
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=6.8e-60 Score=458.39 Aligned_cols=418 Identities=26% Similarity=0.416 Sum_probs=320.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC----C-C--ceEEEcC--CCCCCCCCCC---CC
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA----T-T--VGVEPIS--DGFDEGGFKQ---AP 73 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~----~-g--~~~~~~~--~~~~~~~~~~---~~ 73 (459)
.|+||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+.. + + +.+.++| ++++.+.... ..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~ 83 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPV 83 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCCh
Confidence 47999999999999999999999999999999999999987554432 1 2 6677777 5555432111 10
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCC
Q 012645 74 SVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPV 153 (459)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 153 (459)
.....+........+.+.++++.+ ++|+||+|. +.|+..+|+++|||++.++++++..++.+.. ..+..
T Consensus 84 ~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~---- 152 (453)
T PLN02764 84 TSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL---- 152 (453)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC----
Confidence 111222233334456677777664 679999995 8899999999999999999999877766542 11110
Q ss_pred CCCCCcccCCCCCC----CCCCCCCcccc--CCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC--CCe
Q 012645 154 NQETVPLTLPGLPS----LASSDLPSFLA--QPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL--WPL 225 (459)
Q Consensus 154 ~~~~~~~~~p~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~ 225 (459)
...+|++|. +...+++.+.. .............+.......++++++|||+++|+...+.+... +++
T Consensus 153 -----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v 227 (453)
T PLN02764 153 -----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKV 227 (453)
T ss_pred -----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcE
Confidence 012477762 44455554321 11111122333344435566788999999999999999888654 469
Q ss_pred eeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 012645 226 VMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVV 305 (459)
Q Consensus 226 ~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~ 305 (459)
+.|||+++.. + + ....++++.+|||.++++++|||||||......+++.++..+|+..+.+|+|++
T Consensus 228 ~~VGPL~~~~--------~---~---~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 228 LLTGPVFPEP--------D---K---TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred EEeccCccCc--------c---c---cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999997541 0 0 011245699999999999999999999999899999999999999999999999
Q ss_pred eCCC------CCCchhhhhhcCCCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHH
Q 012645 306 KENE------NKLPVEFVNSVGETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKF 378 (459)
Q Consensus 306 ~~~~------~~~~~~~~~~~~~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~r 378 (459)
+... +.+|++|.+++.++..++ +|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.||++
T Consensus 294 r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~ 373 (453)
T PLN02764 294 KPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRL 373 (453)
T ss_pred eCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHH
Confidence 8531 468999999988887666 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcCC
Q 012645 379 VEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG--ERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKADGK 456 (459)
Q Consensus 379 v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~~~~ 456 (459)
+++.||+|+.+.....+.++.++|.++|+++|++ .+++++|++++++++.+++ +|||..++++|++++.+..++
T Consensus 374 l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~~~~ 449 (453)
T PLN02764 374 LSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDLVSG 449 (453)
T ss_pred HHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccc
Confidence 9764499988753211158999999999999987 3467899999999999854 799999999999999987765
Q ss_pred C
Q 012645 457 S 457 (459)
Q Consensus 457 ~ 457 (459)
+
T Consensus 450 ~ 450 (453)
T PLN02764 450 T 450 (453)
T ss_pred c
Confidence 4
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.1e-60 Score=468.59 Aligned_cols=434 Identities=28% Similarity=0.455 Sum_probs=325.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEecCcccc-----ccC-----CCCceEEEcCCCCCCCCCCC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRV---KATLATTHYTVK-----SIH-----ATTVGVEPISDGFDEGGFKQ 71 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh---~V~~~~~~~~~~-----~~~-----~~g~~~~~~~~~~~~~~~~~ 71 (459)
|++.||+++|++++||++|++.||+.|+.+|. .||+.++..... .+. .++++|+.+|+.......+.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 46789999999999999999999999999984 466666442211 111 13699999986432111010
Q ss_pred -CCCHHHHHHHHHHhchHHHHHHHHHhhcC----CC-CccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhh
Q 012645 72 -APSVKAYLESFKTVGSRTLAEVILKYKDS----ES-PVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQIN 145 (459)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~-~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~ 145 (459)
.......+..+...+...+++.++++... .. ++++||+|.++.|+..+|+++|||++.+++++++.++.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11111222223334445555655554311 12 4599999999999999999999999999999998887776554
Q ss_pred ccCCCCCC---CCC-CCcccCCCCC-CCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHh
Q 012645 146 HGLLTLPV---NQE-TVPLTLPGLP-SLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAML 220 (459)
Q Consensus 146 ~~~~~~p~---~~~-~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (459)
......+. ... +.++.+|+++ .++..+++....... ....+.+......+++++++|||++||+...+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 32211110 001 1235589984 577777775443221 12233444455677899999999999999888875
Q ss_pred c----CCCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh
Q 012645 221 G----LWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA 296 (459)
Q Consensus 221 ~----~~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~ 296 (459)
. .+++++|||+.+.. .. . .. .......+++.+||+.++++++|||||||+...+.+++.+++.+++.
T Consensus 237 ~~~~~~p~v~~vGpl~~~~---~~-~---~~--~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~ 307 (475)
T PLN02167 237 RLPENYPPVYPVGPILSLK---DR-T---SP--NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALEL 307 (475)
T ss_pred hhcccCCeeEEeccccccc---cc-c---CC--CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 4 25799999997631 00 0 00 11112245799999999889999999999988889999999999999
Q ss_pred CCCcEEEEEeCCC-------CCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccc
Q 012645 297 SEKPFLWVVKENE-------NKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQF 369 (459)
Q Consensus 297 ~~~~~v~~~~~~~-------~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~ 369 (459)
++++|||+++... ..+|++|.+++.+++++++|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 308 ~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 308 VGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred CCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9999999987431 247889998898999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHH-HHHhhhceEEeeecC----CCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 012645 370 SDQPTNAKF-VEEVWEVGVRAKKNR----AGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNID 444 (459)
Q Consensus 370 ~DQ~~na~r-v~~~~G~G~~~~~~~----~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~ 444 (459)
.||+.||++ ++++ |+|+.+.... ++.++.++|.++|+++|.++ +.|++||+++++.+++++.+||||..+++
T Consensus 388 ~DQ~~na~~~~~~~-g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~ 464 (475)
T PLN02167 388 AEQQLNAFTMVKEL-GLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVK 464 (475)
T ss_pred ccchhhHHHHHHHh-CeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999987 5666 9999886420 12579999999999999764 38999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 012645 445 EFVVRLLKAD 454 (459)
Q Consensus 445 ~~~~~l~~~~ 454 (459)
+||++|.+..
T Consensus 465 ~~v~~i~~~~ 474 (475)
T PLN02167 465 RFIDDLLGDH 474 (475)
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.8e-60 Score=470.69 Aligned_cols=435 Identities=29% Similarity=0.468 Sum_probs=314.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCC-------------CceEEEcC---CCCCCCCC
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHAT-------------TVGVEPIS---DGFDEGGF 69 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~-------------g~~~~~~~---~~~~~~~~ 69 (459)
+++||+++|+|+.||++|++.||+.|++|||+|||++++.+...+++. .+.+.++| ++++.+..
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 467999999999999999999999999999999999999887655432 23334455 34444321
Q ss_pred CCC-------CCHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHH
Q 012645 70 KQA-------PSVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYW 142 (459)
Q Consensus 70 ~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~ 142 (459)
... .....+...+.... ..+...++++... .++|+||+|.++.|+..+|+++|||++.+++++++......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~-~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFST-KYFKDQLEKLLET-TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHHHH-HHHHHHHHHHHhc-CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 110 01112232232221 2222233332211 27899999999999999999999999999998876655544
Q ss_pred HhhccC--CCCCCCCCCCcccCCCCCC---CCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHH
Q 012645 143 QINHGL--LTLPVNQETVPLTLPGLPS---LASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLR 217 (459)
Q Consensus 143 ~~~~~~--~~~p~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (459)
...... ...+. ....+.+|++|. +...+++.. .....+...+........+.+++++|++.++|+...+
T Consensus 162 ~~~~~~~~~~~~~--~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~ 235 (482)
T PLN03007 162 CIRVHKPQKKVAS--SSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYAD 235 (482)
T ss_pred HHHhcccccccCC--CCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHH
Confidence 322110 00110 011234777762 222233321 1112233444444445667889999999999998888
Q ss_pred HHhcC--CCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHH
Q 012645 218 AMLGL--WPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLK 295 (459)
Q Consensus 218 ~~~~~--~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~ 295 (459)
.+.+. .++++|||+..... ........+... ...++++.+||+.++++++|||||||+.....+.+.+++.+++
T Consensus 236 ~~~~~~~~~~~~VGPl~~~~~---~~~~~~~~~~~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~ 311 (482)
T PLN03007 236 FYKSFVAKRAWHIGPLSLYNR---GFEEKAERGKKA-NIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLE 311 (482)
T ss_pred HHHhccCCCEEEEcccccccc---ccccccccCCcc-ccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHH
Confidence 88653 35999999765310 000000001111 1125679999999988999999999998888889999999999
Q ss_pred hCCCcEEEEEeCCC------CCCchhhhhhc-CCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeecccc
Q 012645 296 ASEKPFLWVVKENE------NKLPVEFVNSV-GETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQ 368 (459)
Q Consensus 296 ~~~~~~v~~~~~~~------~~~~~~~~~~~-~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~ 368 (459)
.++++|||+++... ..+|++|.+++ +.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 312 ~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 312 GSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred HCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccc
Confidence 99999999998632 25788888775 466777799999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhhceEEeeec-----CCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 012645 369 FSDQPTNAKFVEEVWEVGVRAKKN-----RAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNI 443 (459)
Q Consensus 369 ~~DQ~~na~rv~~~~G~G~~~~~~-----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~ 443 (459)
+.||+.||+++++.|++|..+... ..+.++.++|.++|+++|.++++++||+||+++++.+++++.+||||..++
T Consensus 392 ~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l 471 (482)
T PLN03007 392 GAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDL 471 (482)
T ss_pred hhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999988654666554210 011689999999999999987788999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 012645 444 DEFVVRLLK 452 (459)
Q Consensus 444 ~~~~~~l~~ 452 (459)
++|++.+.+
T Consensus 472 ~~~v~~~~~ 480 (482)
T PLN03007 472 NKFMEELNS 480 (482)
T ss_pred HHHHHHHHh
Confidence 999999875
No 19
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-59 Score=460.40 Aligned_cols=435 Identities=28% Similarity=0.486 Sum_probs=323.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC---------CCceEEEcC-----CCCCCCCCCC
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA---------TTVGVEPIS-----DGFDEGGFKQ 71 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~---------~g~~~~~~~-----~~~~~~~~~~ 71 (459)
++.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+.. ..++|+.+| ++++.+....
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 34799999999999999999999999999999999999877543322 138899887 4665442111
Q ss_pred C--C--CHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhh--
Q 012645 72 A--P--SVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQIN-- 145 (459)
Q Consensus 72 ~--~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~-- 145 (459)
. . .....+........+.+.++++.. ..++++||+|.++.|+..+|+++|||++.+++++++.........
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 1 1 112122222223455666666542 236799999999999999999999999999998887666543222
Q ss_pred ccCCCCCCCCCCCcccCCCCCC---CCCCCCCccccCCCCChHHHHHHHHHhhc-ccCCceEEEcchhHhhHHHHHHHhc
Q 012645 146 HGLLTLPVNQETVPLTLPGLPS---LASSDLPSFLAQPASNPAYLAAILEQFGS-LNKNDWVLCNSFEELEKELLRAMLG 221 (459)
Q Consensus 146 ~~~~~~p~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (459)
......+ ....++.+|++|+ +...+++..+..... . ..+...... ...++++++|||.+||+...+.+..
T Consensus 164 ~~~~~~~--~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~---~-~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 164 NAHLSVS--SDSEPFVVPGMPQSIEITRAQLPGAFVSLPD---L-DDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred cccccCC--CCCceeecCCCCccccccHHHCChhhcCccc---H-HHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 1111111 1123455788873 556666654422111 1 222222222 2346799999999999998888865
Q ss_pred C--CCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 012645 222 L--WPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEK 299 (459)
Q Consensus 222 ~--~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~ 299 (459)
. .+++.|||+...... .......+ .......+++.+||+.++++++|||||||......+.+.+++.+++.++.
T Consensus 238 ~~~~~v~~VGPL~~~~~~---~~~~~~~~-~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~ 313 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKR---NLDKFERG-NKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKK 313 (491)
T ss_pred hcCCcEEEECcccccccc---cccccccC-CccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 3 469999999753100 00000001 11111234689999999889999999999999999999999999999999
Q ss_pred cEEEEEeCCC------C-CCchhhhhhc-CCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccc
Q 012645 300 PFLWVVKENE------N-KLPVEFVNSV-GETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSD 371 (459)
Q Consensus 300 ~~v~~~~~~~------~-~~~~~~~~~~-~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~D 371 (459)
+|||++.... . .+|++|.+++ +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.|
T Consensus 314 ~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~d 393 (491)
T PLN02534 314 PFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAE 393 (491)
T ss_pred CEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecccccc
Confidence 9999998421 1 3678888775 456666799999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhceEEeeec-------C-C-C-cccHHHHHHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHHhcCCCc
Q 012645 372 QPTNAKFVEEVWEVGVRAKKN-------R-A-G-IVTGEELNKCVNEVMD--GERSQKIKRNVSKWREFAKKAVSAGGSS 439 (459)
Q Consensus 372 Q~~na~rv~~~~G~G~~~~~~-------~-~-~-~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~l~~~~~~~~~~~g~s 439 (459)
|+.||+++++.||+|+.+... + + + ..+.++|.++|+++|. +++++++|+||+++++.+++++.+||||
T Consensus 394 q~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS 473 (491)
T PLN02534 394 QFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSS 473 (491)
T ss_pred HHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 999999999888999987421 0 0 1 3799999999999997 4457799999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 012645 440 DKNIDEFVVRLLKA 453 (459)
Q Consensus 440 ~~~~~~~~~~l~~~ 453 (459)
...+++|+++|.+.
T Consensus 474 ~~nl~~fv~~i~~~ 487 (491)
T PLN02534 474 HINLSILIQDVLKQ 487 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999754
No 20
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-59 Score=458.98 Aligned_cols=408 Identities=24% Similarity=0.409 Sum_probs=307.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCC-----CceEEEcC----CCCCCCCCCCCCCHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHAT-----TVGVEPIS----DGFDEGGFKQAPSVKA 77 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~-----g~~~~~~~----~~~~~~~~~~~~~~~~ 77 (459)
++||+++|+++.||++|++.||+.|+++||+|||++++.+...++.. ++.+..++ ++++.+.. ....+..
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~-~~~~l~~ 82 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAE-TTSDIPI 82 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcc-cccchhH
Confidence 48999999999999999999999999999999999999887766442 44565543 34444321 1112221
Q ss_pred H----HHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCC
Q 012645 78 Y----LESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPV 153 (459)
Q Consensus 78 ~----~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 153 (459)
. +........+.++++++++ ++|+||+| ++.|+..+|+++|||++.+++++++.+. +.+.+.....
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~-----~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~--- 152 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRAL-----RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLG--- 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccC---
Confidence 1 2222233444556555544 78999999 5789999999999999999999887543 3322211111
Q ss_pred CCCCCcccCCCCCC----CCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC--CCeee
Q 012645 154 NQETVPLTLPGLPS----LASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL--WPLVM 227 (459)
Q Consensus 154 ~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 227 (459)
..+|++|. +...+++.+ .. ..........+......+++++++|||.+||+...+.+... ++++.
T Consensus 153 ------~~~pglp~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 153 ------VPPPGYPSSKVLFRENDAHAL-AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred ------CCCCCCCCcccccCHHHcCcc-cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 12577763 334455543 11 11112222223334556789999999999999888887553 46999
Q ss_pred ecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 012645 228 IGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKE 307 (459)
Q Consensus 228 vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~ 307 (459)
|||+.... + ..+++++++.+||+.++++++|||||||+...+.+.+.+++.+++..+..++|+++.
T Consensus 224 vGpl~~~~------~--------~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~ 289 (442)
T PLN02208 224 TGPMFPEP------D--------TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKP 289 (442)
T ss_pred EeecccCc------C--------CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 99997541 0 012356789999999988899999999999888888888888888888889999885
Q ss_pred C----C--CCCchhhhhhcCC-CceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHH
Q 012645 308 N----E--NKLPVEFVNSVGE-TGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVE 380 (459)
Q Consensus 308 ~----~--~~~~~~~~~~~~~-~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~ 380 (459)
. . ..+|++|.+++.+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 290 ~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~ 369 (442)
T PLN02208 290 PRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMT 369 (442)
T ss_pred CCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHH
Confidence 3 1 3588899888764 5555599999999999999999999999999999999999999999999999999988
Q ss_pred HhhhceEEeeecCCCcccHHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 012645 381 EVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE--RSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLK 452 (459)
Q Consensus 381 ~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~ 452 (459)
+.||+|+.+...+++.++.++|.++|+++|+++ .++.+|++++++++.+. ++|||..++++|++++.+
T Consensus 370 ~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 370 EEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 744999999764111399999999999999874 36789999999999974 368999999999999865
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.8e-58 Score=450.29 Aligned_cols=412 Identities=27% Similarity=0.421 Sum_probs=309.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----CCceEEEcC----CCCCCCCCCCCCCH--
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----TTVGVEPIS----DGFDEGGFKQAPSV-- 75 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~----~~~~~~~~~~~~~~-- 75 (459)
+.||+++|+++.||++|++.||+.|+++|++|||++++.+...++. .++.|+.++ ++++.+. +...++
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~-e~~~~l~~ 82 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGA-ETASDLPN 82 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcc-cccccchh
Confidence 4899999999999999999999999999999999999987665543 247775553 4555432 111111
Q ss_pred --HHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCC
Q 012645 76 --KAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPV 153 (459)
Q Consensus 76 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 153 (459)
...+........+.++++++.. +||+||+|. +.|+..+|+++|||++.++++++..++.+.+.... .
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~~-----~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-~---- 151 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRAL-----KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-L---- 151 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC-----CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-c----
Confidence 1112222223344444444332 789999995 88999999999999999999998877776552210 0
Q ss_pred CCCCCcccCCCCCC----CCCCCC--CccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC--CCe
Q 012645 154 NQETVPLTLPGLPS----LASSDL--PSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL--WPL 225 (459)
Q Consensus 154 ~~~~~~~~~p~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~ 225 (459)
+ ..+|++|. +...+. +.++.. ....+.+......+++++++|||.+||+...+.+.+. +++
T Consensus 152 ---~--~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v 220 (446)
T PLN00414 152 ---G--FPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKV 220 (446)
T ss_pred ---C--CCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 0 12455552 111111 121211 1133444445566789999999999999999888663 359
Q ss_pred eeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 012645 226 VMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVV 305 (459)
Q Consensus 226 ~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~ 305 (459)
+.|||+.+.. ... + + ....+++.+|||.++++++|||||||......+++.++..+|+..+.+|+|++
T Consensus 221 ~~VGPl~~~~----~~~-~---~----~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvv 288 (446)
T PLN00414 221 LLTGPMLPEP----QNK-S---G----KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAV 288 (446)
T ss_pred EEEcccCCCc----ccc-c---C----cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999997541 000 0 0 11235688999999999999999999999999999999999999999999999
Q ss_pred eCCC------CCCchhhhhhcCCCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHH
Q 012645 306 KENE------NKLPVEFVNSVGETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKF 378 (459)
Q Consensus 306 ~~~~------~~~~~~~~~~~~~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~r 378 (459)
.... +.+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++
T Consensus 289 r~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~ 368 (446)
T PLN00414 289 MPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRL 368 (446)
T ss_pred ecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHH
Confidence 7631 368999999999888887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcCC
Q 012645 379 VEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE--RSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKADGK 456 (459)
Q Consensus 379 v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~~~~ 456 (459)
+++.||+|+.+....++.++.++|+++++++|.++ .++++|++++++++.+. ++||+| ..+++|++++.+..++
T Consensus 369 ~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~~~~~ 444 (446)
T PLN00414 369 LTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALENEVNN 444 (446)
T ss_pred HHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHHhccc
Confidence 97544999998643112489999999999999864 35679999999999974 466644 3389999999776655
Q ss_pred C
Q 012645 457 S 457 (459)
Q Consensus 457 ~ 457 (459)
+
T Consensus 445 ~ 445 (446)
T PLN00414 445 T 445 (446)
T ss_pred C
Confidence 3
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.7e-46 Score=372.68 Aligned_cols=402 Identities=17% Similarity=0.197 Sum_probs=275.1
Q ss_pred CcEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc--ccccCCCCceEEEcCC---CCCCCCCC-----C---C
Q 012645 7 RVHVLVL-TYPAQGHINPLLQFAKRLASKRVKATLATTHYT--VKSIHATTVGVEPISD---GFDEGGFK-----Q---A 72 (459)
Q Consensus 7 ~~kil~~-~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~--~~~~~~~g~~~~~~~~---~~~~~~~~-----~---~ 72 (459)
..||+.+ |.++.+|..-+.+|+++|++|||+||++++... .......+++.+.++. .+...... . .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 3578766 778999999999999999999999999987542 1111235666666541 10000000 0 0
Q ss_pred CCHHHH----HHHHHHhchHHH--HHHHHHhhcCCCCccEEEeCCCchhHHHHHHHc-CCceEEEccchHHHHHHHHHhh
Q 012645 73 PSVKAY----LESFKTVGSRTL--AEVILKYKDSESPVNCIVYDSLLTWALDVARQF-GIYGAAMMTNSASVCSMYWQIN 145 (459)
Q Consensus 73 ~~~~~~----~~~~~~~~~~~~--~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~l-giP~v~~~~~~~~~~~~~~~~~ 145 (459)
.+.... ...+...++..+ .++.+.+..+..++|+||+|.+..++..+|+++ ++|.|.+++........ ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~---~~ 176 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF---ET 176 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH---Hh
Confidence 000000 011111111111 112233321234899999999988888899999 99998887755322211 11
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCCCCCCCccccCCCCC--------------hHHHHHHHHHhhc-c-------cCCceE
Q 012645 146 HGLLTLPVNQETVPLTLPGLPSLASSDLPSFLAQPASN--------------PAYLAAILEQFGS-L-------NKNDWV 203 (459)
Q Consensus 146 ~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-~-------~~~~~~ 203 (459)
.+..+.|. .++|.+. ....+.+.++.|.... ....+..++.+.. . .+.+..
T Consensus 177 ~gg~p~~~------syvP~~~-~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~ 249 (507)
T PHA03392 177 MGAVSRHP------VYYPNLW-RSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLL 249 (507)
T ss_pred hccCCCCC------eeeCCcc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEE
Confidence 12112222 2244433 3444566665553221 1111122222221 1 123467
Q ss_pred EEcchhHhhHHHHHHHhcC-CCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCccc-
Q 012645 204 LCNSFEELEKELLRAMLGL-WPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMAD- 281 (459)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~- 281 (459)
++|+.+.++.+ .+. +++.++||+..+. ...+++++++.+|++.+ ++++|||||||+..
T Consensus 250 lvns~~~~d~~-----rp~~p~v~~vGgi~~~~--------------~~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~ 309 (507)
T PHA03392 250 FVNVHPVFDNN-----RPVPPSVQYLGGLHLHK--------------KPPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDT 309 (507)
T ss_pred EEecCccccCC-----CCCCCCeeeecccccCC--------------CCCCCCCHHHHHHHhcC-CCcEEEEECCCCCcC
Confidence 88888877753 222 3588899876531 11346788899999876 45799999999864
Q ss_pred --CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhc
Q 012645 282 --IAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSL 359 (459)
Q Consensus 282 --~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~ 359 (459)
.+.+.++.+++++++.+.++||+.+.. ..+ ...++||++.+|+||.+||+||.|++||||||+||++||+++
T Consensus 310 ~~~~~~~~~~~l~a~~~l~~~viw~~~~~--~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~ 383 (507)
T PHA03392 310 NDMDNEFLQMLLRTFKKLPYNVLWKYDGE--VEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDA 383 (507)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCC--cCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHc
Confidence 467899999999999999999998742 111 135789999999999999999999999999999999999999
Q ss_pred CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCc
Q 012645 360 GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSS 439 (459)
Q Consensus 360 GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s 439 (459)
|||||++|++.||+.||+|++++ |+|+.++.. .+++++|.++|+++++|+ +|++||+++++.+++. .-+.
T Consensus 384 GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~---~~t~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~---p~~~ 453 (507)
T PHA03392 384 LVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTV---TVSAAQLVLAIVDVIENP---KYRKNLKELRHLIRHQ---PMTP 453 (507)
T ss_pred CCCEEECCCCccHHHHHHHHHHc-CcEEEeccC---CcCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhC---CCCH
Confidence 99999999999999999999999 999999987 899999999999999998 9999999999999862 2234
Q ss_pred HHHHHHHHHHHHHhc
Q 012645 440 DKNIDEFVVRLLKAD 454 (459)
Q Consensus 440 ~~~~~~~~~~l~~~~ 454 (459)
.+.+..-++.+.++.
T Consensus 454 ~~~av~~iE~v~r~~ 468 (507)
T PHA03392 454 LHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHHHHHHhCC
Confidence 555666777776654
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=6.3e-45 Score=357.84 Aligned_cols=372 Identities=20% Similarity=0.276 Sum_probs=256.4
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCC-C--CCCHHHHHHHHHHhchHH
Q 012645 13 LTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFK-Q--APSVKAYLESFKTVGSRT 89 (459)
Q Consensus 13 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~ 89 (459)
+.+|+.||++|++.||++|+++||+|+|++++.+.+.+++.|+.|++++......... . ..+.......+.......
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDV 80 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999999999998654331110 0 023344444444444455
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCCCCC
Q 012645 90 LAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLPSLA 169 (459)
Q Consensus 90 ~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~ 169 (459)
+..+.+.+... +||+||+|.+++++..+|+++|||+|.+++.+... ...+ .+ .| +..
T Consensus 81 ~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~-----~~---------~~---~~~ 137 (392)
T TIGR01426 81 LPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFE-----EM---------VS---PAG 137 (392)
T ss_pred HHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccc-----cc---------cc---ccc
Confidence 55555544433 89999999988899999999999999986543100 0000 00 00 000
Q ss_pred CCC--CCccccCCCCChHHHHHHHHHhh--ccc----------CCceEEEcchhHhhHHHHHHHhcC-CCeeeecccCCC
Q 012645 170 SSD--LPSFLAQPASNPAYLAAILEQFG--SLN----------KNDWVLCNSFEELEKELLRAMLGL-WPLVMIGPLVPS 234 (459)
Q Consensus 170 ~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~vgp~~~~ 234 (459)
... ......+ ....+.+.+.+... .+. ..+..+..+.+.+.++. ... .+++++||+...
T Consensus 138 ~~~~~~~~~~~~--~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~Gp~~~~ 211 (392)
T TIGR01426 138 EGSAEEGAIAER--GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAG----ETFDDSFTFVGPCIGD 211 (392)
T ss_pred hhhhhhhccccc--hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCc----cccCCCeEEECCCCCC
Confidence 000 0000000 00111111111111 110 11123444444444321 112 248899997654
Q ss_pred ccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCch
Q 012645 235 AYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPV 314 (459)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~ 314 (459)
. .+...|....+++++||||+||+.......+..+++++...+.+++|..+... ...
T Consensus 212 ~---------------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~--~~~ 268 (392)
T TIGR01426 212 R---------------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV--DPA 268 (392)
T ss_pred c---------------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC--Chh
Confidence 1 01223555556788999999998766667888999999999999998876531 111
Q ss_pred hhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCC
Q 012645 315 EFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRA 394 (459)
Q Consensus 315 ~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 394 (459)
.+ ...++|+.+.+|+|+.++|+++++ +|||||+||++||+++|||+|++|...||+.||.+++++ |+|..+...
T Consensus 269 ~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~-- 342 (392)
T TIGR01426 269 DL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPE-- 342 (392)
T ss_pred Hh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEeccc--
Confidence 22 135689999999999999988777 999999999999999999999999999999999999999 999999877
Q ss_pred CcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012645 395 GIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLL 451 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~ 451 (459)
.++++.|.++|+++|+|+ +|+++++++++.+.+. ++ .+.+.++|+++.
T Consensus 343 -~~~~~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~~----~~-~~~aa~~i~~~~ 390 (392)
T TIGR01426 343 -EVTAEKLREAVLAVLSDP---RYAERLRKMRAEIREA----GG-ARRAADEIEGFL 390 (392)
T ss_pred -cCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHc----CC-HHHHHHHHHHhh
Confidence 899999999999999998 9999999999999862 33 345555555543
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.2e-44 Score=357.35 Aligned_cols=375 Identities=18% Similarity=0.166 Sum_probs=246.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCC----------CCCCHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFK----------QAPSVKA 77 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~ 77 (459)
|||+|+++|+.||++|+++||++|+++||+|+|++++.++..+++.|++|+++++........ .......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLG 80 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHHH
Confidence 899999999999999999999999999999999999999999999999999997543221000 0111222
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCC
Q 012645 78 YLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQET 157 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 157 (459)
....+.......++.+++.+... +||+||+|.+.+++..+|+++|||++.+++++..... .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--------~--------- 141 (401)
T cd03784 81 ALRLLRREAEAMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS--------A--------- 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc--------c---------
Confidence 33334444555566666655433 8999999998888999999999999999876521100 0
Q ss_pred CcccCCCCCCCCCCC--CCccccCCCCChHHHHHHHHHhh--cccC-------CceEEEcchhHhhHHHHHHHhcCC-Ce
Q 012645 158 VPLTLPGLPSLASSD--LPSFLAQPASNPAYLAAILEQFG--SLNK-------NDWVLCNSFEELEKELLRAMLGLW-PL 225 (459)
Q Consensus 158 ~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~-~~ 225 (459)
.| |+..... ...................+... .+.. .+..+....+.+.+ ..++.+ ..
T Consensus 142 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 211 (401)
T cd03784 142 ----FP--PPLGRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLP----PPPDWPRFD 211 (401)
T ss_pred ----CC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCC----CCCCccccC
Confidence 00 0010000 00000000000000011111111 1110 00111111111000 001111 12
Q ss_pred eeec-ccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEE
Q 012645 226 VMIG-PLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMAD-IAANQVDEIARGLKASEKPFLW 303 (459)
Q Consensus 226 ~~vg-p~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~~~~~v~ 303 (459)
.++| ++... ......++++..|++. ++++|||++||+.. .....+..++++++..+.++||
T Consensus 212 ~~~g~~~~~~---------------~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~ 274 (401)
T cd03784 212 LVTGYGFRDV---------------PYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAIL 274 (401)
T ss_pred cEeCCCCCCC---------------CCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEE
Confidence 2332 11111 0011235567888875 46699999999976 3456778899999999999999
Q ss_pred EEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhh
Q 012645 304 VVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVW 383 (459)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~ 383 (459)
+++.... .. ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||++++++
T Consensus 275 ~~g~~~~--~~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~- 346 (401)
T cd03784 275 SLGWGGL--GA---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL- 346 (401)
T ss_pred EccCccc--cc---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-
Confidence 8876421 11 135789999999999999977666 999999999999999999999999999999999999999
Q ss_pred hceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012645 384 EVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVV 448 (459)
Q Consensus 384 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~ 448 (459)
|+|..+... .+++++|.+++++++++ .++++++++++.+++ ......+.++|+
T Consensus 347 G~g~~l~~~---~~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~-----~~g~~~~~~~ie 399 (401)
T cd03784 347 GAGPALDPR---ELTAERLAAALRRLLDP----PSRRRAAALLRRIRE-----EDGVPSAADVIE 399 (401)
T ss_pred CCCCCCCcc---cCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh-----ccCHHHHHHHHh
Confidence 999999887 78999999999999996 556677777777754 222445555554
No 25
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=4.6e-46 Score=377.46 Aligned_cols=408 Identities=25% Similarity=0.333 Sum_probs=223.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc--CCCCceEEEcCCCCCCCCCCC-CCCH-HHH------
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI--HATTVGVEPISDGFDEGGFKQ-APSV-KAY------ 78 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~-~~~~-~~~------ 78 (459)
|||++|. +.||+.++..|+++|++|||+||++++......- ...+++++.++.......... .... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 6788885 7899999999999999999999999886532221 234677777765444322111 1111 000
Q ss_pred -------HHHH---HHhchHHH------HHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHH
Q 012645 79 -------LESF---KTVGSRTL------AEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYW 142 (459)
Q Consensus 79 -------~~~~---~~~~~~~~------~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~ 142 (459)
+... .......+ .++++.++.. ++|++|+|.+..|+..+|+.+|+|.+.+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~----- 153 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY----- 153 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS-----
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEecccccc-----
Confidence 0000 00001111 1111222222 78999999999989999999999998754322100
Q ss_pred HhhccCC-CCCCCCCCCcccCCCCCCCCCCCCCccccCCCCChH--HHHHHHHHhhcccCCceEEEc----chhHhhHHH
Q 012645 143 QINHGLL-TLPVNQETVPLTLPGLPSLASSDLPSFLAQPASNPA--YLAAILEQFGSLNKNDWVLCN----SFEELEKEL 215 (459)
Q Consensus 143 ~~~~~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~ 215 (459)
...... ..|. .+..+|... ....+.+.++.|...... ......+.............. +..++....
T Consensus 154 -~~~~~~~g~p~----~psyvP~~~-s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (500)
T PF00201_consen 154 -DLSSFSGGVPS----PPSYVPSMF-SDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNA 227 (500)
T ss_dssp -CCTCCTSCCCT----STTSTTCBC-CCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHH
T ss_pred -hhhhhccCCCC----ChHHhcccc-ccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHH
Confidence 000000 0111 111233321 233455556655433321 112222222111011111111 111221111
Q ss_pred HHHHhc-CCCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccC-CHHHHHHHHHH
Q 012645 216 LRAMLG-LWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADI-AANQVDEIARG 293 (459)
Q Consensus 216 ~~~~~~-~~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~i~~a 293 (459)
...+-+ .+.+.+.+|+.+...+.|+...+ ..+++++++..|++...++++|||||||+... +.+..+.++++
T Consensus 228 ~l~l~ns~~~ld~prp~~p~v~~vGgl~~~------~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~ 301 (500)
T PF00201_consen 228 SLVLINSHPSLDFPRPLLPNVVEVGGLHIK------PAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEA 301 (500)
T ss_dssp HHCCSSTEEE----HHHHCTSTTGCGC-S----------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHH
T ss_pred HHHhhhccccCcCCcchhhcccccCccccc------cccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHH
Confidence 111111 12244445555555444443321 24577899999999855788999999998764 44457889999
Q ss_pred HHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchh
Q 012645 294 LKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQP 373 (459)
Q Consensus 294 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~ 373 (459)
+++++.+|||+.... .+. ..++|+++.+|+||.+||+||++++||||||+||+.||+++|||+|++|+++||+
T Consensus 302 ~~~~~~~~iW~~~~~---~~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~ 374 (500)
T PF00201_consen 302 FENLPQRFIWKYEGE---PPE----NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQP 374 (500)
T ss_dssp HHCSTTEEEEEETCS---HGC----HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHH
T ss_pred HhhCCCccccccccc---ccc----cccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCC
Confidence 999999999999641 111 2568999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012645 374 TNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKA 453 (459)
Q Consensus 374 ~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~ 453 (459)
.||+++++. |+|+.++.. .+|.++|.++|+++|+|+ +|++||+++++.+++. . -+..+.+..-+|.+.++
T Consensus 375 ~na~~~~~~-G~g~~l~~~---~~~~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~--p-~~p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 375 RNAARVEEK-GVGVVLDKN---DLTEEELRAAIREVLENP---SYKENAKRLSSLFRDR--P-ISPLERAVWWIEYVARH 444 (500)
T ss_dssp HHHHHHHHT-TSEEEEGGG---C-SHHHHHHHHHHHHHSH---HHHHHHHHHHHTTT-----------------------
T ss_pred ccceEEEEE-eeEEEEEec---CCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHhc
Confidence 999999999 999999998 899999999999999998 9999999999999862 1 22334444445555443
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3e-43 Score=341.67 Aligned_cols=396 Identities=19% Similarity=0.249 Sum_probs=247.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCC-CCCCCCCCCCCHHHHHHHHHHh
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDG-FDEGGFKQAPSVKAYLESFKTV 85 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
+|||+|+..|++||++|+++||++|+++||+|+|++++.+++.+++.|+.|..++.. .............+.+......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQQ 80 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcceeeccccCChhhhhhhhhhccchhHHHhhh
Confidence 599999999999999999999999999999999999999999999999888888743 1111111111111111101112
Q ss_pred chHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCC
Q 012645 86 GSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGL 165 (459)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~ 165 (459)
....+.++++-+.+. .+|+|+.|.....+ .+++..++|++.......+.. +....+.+..........+..
T Consensus 81 ~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 151 (406)
T COG1819 81 FKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPL------PAAGLPLPPVGIAGKLPIPLY 151 (406)
T ss_pred hhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCC------cccccCccccccccccccccc
Confidence 222233333333333 78999999665544 889999999998766542211 111111111110000011111
Q ss_pred CCCCCCCCCccccCCCCChHH-HHHHHHHhhcccCCc---eEEEcchhHhhHHHHHHHhcC-CCeeeecccCCCcccccc
Q 012645 166 PSLASSDLPSFLAQPASNPAY-LAAILEQFGSLNKND---WVLCNSFEELEKELLRAMLGL-WPLVMIGPLVPSAYLDQQ 240 (459)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~~ 240 (459)
+ .......+. .....+ .....+....+.... ..+..+-+.++....+..... ....++++.+.+.
T Consensus 152 ~-~~~~~~~~~----~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----- 221 (406)
T COG1819 152 P-LPPRLVRPL----IFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPL----- 221 (406)
T ss_pred c-cChhhcccc----ccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccc-----
Confidence 0 000000000 000000 011111111110000 000000000000000000000 0011111111110
Q ss_pred ccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhc
Q 012645 241 IAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSV 320 (459)
Q Consensus 241 ~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~ 320 (459)
......++..|+. .++++||+|+||+... .++++.+++++..++.++|+.... . .. . ....
T Consensus 222 -----------~~~~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~-~~-~--~~~~ 282 (406)
T COG1819 222 -----------LGEAANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A-RD-T--LVNV 282 (406)
T ss_pred -----------cccccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c-cc-c--cccC
Confidence 0111223334433 3567999999999876 899999999999999999998864 1 11 1 1136
Q ss_pred CCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHH
Q 012645 321 GETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGE 400 (459)
Q Consensus 321 ~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~ 400 (459)
++|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||++||.|++++ |+|..+..+ .++++
T Consensus 283 p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~~---~l~~~ 356 (406)
T COG1819 283 PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPFE---ELTEE 356 (406)
T ss_pred CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCcc---cCCHH
Confidence 789999999999999977777 999999999999999999999999999999999999999 999999998 89999
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012645 401 ELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKAD 454 (459)
Q Consensus 401 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~~ 454 (459)
.|+++|+++|+|+ .|+++++++++.++++ +| ...+.++|++..+..
T Consensus 357 ~l~~av~~vL~~~---~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~~ 402 (406)
T COG1819 357 RLRAAVNEVLADD---SYRRAAERLAEEFKEE---DG--PAKAADLLEEFAREK 402 (406)
T ss_pred HHHHHHHHHhcCH---HHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhcc
Confidence 9999999999998 9999999999999973 23 666777777765543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.3e-39 Score=330.30 Aligned_cols=389 Identities=28% Similarity=0.395 Sum_probs=245.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-CC-----------ceEEEcCCCCCCCCCCCCCC
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-TT-----------VGVEPISDGFDEGGFKQAPS 74 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-~g-----------~~~~~~~~~~~~~~~~~~~~ 74 (459)
+.+++++++|+.||++|+..+|+.|+++||+||++.+......... .. ..+...++.++.........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 4578888889999999999999999999999999999876554433 11 11111111111111000000
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhc-CCCCccEEEeCCCchhHHHHHHHcC-CceEEEccchHHHHHHHHHhhccCCCCC
Q 012645 75 VKAYLESFKTVGSRTLAEVILKYKD-SESPVNCIVYDSLLTWALDVARQFG-IYGAAMMTNSASVCSMYWQINHGLLTLP 152 (459)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~Dlvi~D~~~~~~~~~a~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~p 152 (459)
.......+...+...+.+....+.. ...++|++|+|.+..+...++...+ ++...+............+.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~---- 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSY---- 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccc----
Confidence 1111223333334444443333332 2124999999998766777776664 888888776654443322222111
Q ss_pred CCCCCCcccCCCCCCCCCCCCCccccCCCCCh-H--------------HHHHHHHHhhccc----CCceEEEcc-hhHhh
Q 012645 153 VNQETVPLTLPGLPSLASSDLPSFLAQPASNP-A--------------YLAAILEQFGSLN----KNDWVLCNS-FEELE 212 (459)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~----~~~~~~~~~-~~~l~ 212 (459)
+|........+.+.+..+..... . ............. .....+.++ +..++
T Consensus 161 ---------~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln 231 (496)
T KOG1192|consen 161 ---------VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLN 231 (496)
T ss_pred ---------cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEc
Confidence 11111000001122221111000 0 0011111111111 111223333 44444
Q ss_pred HHHHHHHhc---CCCeeeecccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCC--cEEEEEeCCcc---cCCH
Q 012645 213 KELLRAMLG---LWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEK--SVIYVSFGSMA---DIAA 284 (459)
Q Consensus 213 ~~~~~~~~~---~~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~--~~V~vs~Gs~~---~~~~ 284 (459)
......+.. .++++++||+..... ..+.++ ..+|++..+.. ++|||||||+. ..+.
T Consensus 232 ~~~~~~~~~~~~~~~v~~IG~l~~~~~-------------~~~~~~---~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~ 295 (496)
T KOG1192|consen 232 SNPLLDFEPRPLLPKVIPIGPLHVKDS-------------KQKSPL---PLEWLDILDESRHSVVYISFGSMVNSADLPE 295 (496)
T ss_pred cCcccCCCCCCCCCCceEECcEEecCc-------------cccccc---cHHHHHHHhhccCCeEEEECCcccccccCCH
Confidence 333222211 346999999876510 001112 34455544443 79999999998 6899
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEeCCC-CCCchhhhhhcCCCceEEeeecHHHH-hcccCccceeccCchhhHHHhhhcCC
Q 012645 285 NQVDEIARGLKAS-EKPFLWVVKENE-NKLPVEFVNSVGETGLVVRWCNQFEV-LAHQAVGCFITHCGWNSILEGLSLGV 361 (459)
Q Consensus 285 ~~~~~i~~a~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~v~v~~~~p~~~l-L~~~~~~~~I~HGG~gs~~eal~~Gv 361 (459)
+....++.+++.. +..|+|+..... ..+++++.++.++||...+|+||.++ |.|+.+++||||||+||++|++++||
T Consensus 296 ~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~Gv 375 (496)
T KOG1192|consen 296 EQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGV 375 (496)
T ss_pred HHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCC
Confidence 9999999999999 888999998753 22344444333578999999999998 59999999999999999999999999
Q ss_pred eeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q 012645 362 AVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKK 431 (459)
Q Consensus 362 P~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 431 (459)
|+|++|+++||+.||+++++. |.|..+... +.+...+.+++.++++++ +|+++++++++..++
T Consensus 376 P~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~---~~~~~~~~~~~~~il~~~---~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 376 PMVCVPLFGDQPLNARLLVRH-GGGGVLDKR---DLVSEELLEAIKEILENE---EYKEAAKRLSEILRD 438 (496)
T ss_pred ceecCCccccchhHHHHHHhC-CCEEEEehh---hcCcHHHHHHHHHHHcCh---HHHHHHHHHHHHHHc
Confidence 999999999999999999999 878778777 677766999999999998 999999999998874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=7.5e-27 Score=224.19 Aligned_cols=319 Identities=18% Similarity=0.161 Sum_probs=204.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc--ccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK--SIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVG 86 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (459)
||+|.+.||.||++|.+++|++|.++||+|.|++.....+ .+.+.|+.++.++.. . ...... ...+.......
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~---~-l~~~~~-~~~~~~~~~~~ 77 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG---K-LRRYFD-LKNIKDPFLVM 77 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc---C-cCCCch-HHHHHHHHHHH
Confidence 6899999999999999999999999999999999776543 345568988888621 1 111111 22233332222
Q ss_pred hHH--HHHHHHHhhcCCCCccEEEeCCCch--hHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccC
Q 012645 87 SRT--LAEVILKYKDSESPVNCIVYDSLLT--WALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTL 162 (459)
Q Consensus 87 ~~~--~~~l~~~~~~~~~~~Dlvi~D~~~~--~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (459)
... ...+++++ +||+||....+. .+..+|+.+++|++....+. +
T Consensus 78 ~~~~~~~~i~~~~-----kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~---------------------------~ 125 (352)
T PRK12446 78 KGVMDAYVRIRKL-----KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM---------------------------T 125 (352)
T ss_pred HHHHHHHHHHHhc-----CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC---------------------------C
Confidence 222 22344544 899999876443 36889999999999876543 2
Q ss_pred CCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCcccccccc
Q 012645 163 PGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIA 242 (459)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~ 242 (459)
|++ ..+.+.+.. +.+ +.+|++- ...++. .++.++|+.+.+...
T Consensus 126 ~g~--------------------~nr~~~~~a------~~v-~~~f~~~----~~~~~~-~k~~~tG~Pvr~~~~----- 168 (352)
T PRK12446 126 PGL--------------------ANKIALRFA------SKI-FVTFEEA----AKHLPK-EKVIYTGSPVREEVL----- 168 (352)
T ss_pred ccH--------------------HHHHHHHhh------CEE-EEEccch----hhhCCC-CCeEEECCcCCcccc-----
Confidence 221 112222222 111 2223221 111221 257889976655211
Q ss_pred CCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCH-HHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcC
Q 012645 243 GDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAA-NQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVG 321 (459)
Q Consensus 243 ~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 321 (459)
....+...+.+.-.+++++|+|..||...... +.+..++..+. .+.+++|+++..+ +..... . .
T Consensus 169 ----------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--~~~~~~-~-~ 233 (352)
T PRK12446 169 ----------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--LDDSLQ-N-K 233 (352)
T ss_pred ----------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch--HHHHHh-h-c
Confidence 11111222223333467799999999875322 22333333332 2477888877532 111111 1 1
Q ss_pred CCceEEeee-cHH-HHhcccCccceeccCchhhHHHhhhcCCeeeccccc-----cchhhHHHHHHHhhhceEEeeecCC
Q 012645 322 ETGLVVRWC-NQF-EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQF-----SDQPTNAKFVEEVWEVGVRAKKNRA 394 (459)
Q Consensus 322 ~~v~v~~~~-p~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~-----~DQ~~na~rv~~~~G~G~~~~~~~~ 394 (459)
.+..+.+|+ ++. ++++++++ +|||||.+|+.|++++|+|+|++|+. .||..||..+++. |+|..+...
T Consensus 234 ~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l~~~-- 308 (352)
T PRK12446 234 EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVLYEE-- 308 (352)
T ss_pred CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEcchh--
Confidence 345566887 534 89988888 99999999999999999999999974 4899999999999 999999887
Q ss_pred CcccHHHHHHHHHHHhcChhhHHHHHHHHH
Q 012645 395 GIVTGEELNKCVNEVMDGERSQKIKRNVSK 424 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 424 (459)
+++++.|.+++.++++|+ +.+++++++
T Consensus 309 -~~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 309 -DVTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred -cCCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 899999999999999886 245544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=1.8e-26 Score=220.73 Aligned_cols=306 Identities=18% Similarity=0.201 Sum_probs=196.6
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH---H
Q 012645 8 VHVLVLTYP-AQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF---K 83 (459)
Q Consensus 8 ~kil~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 83 (459)
|||+|...+ +.||+.++++||++| +||+|+|++.....+.+... +.+..++.-.... ....-+........ .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-FPVREIPGLGPIQ-ENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-cCEEEccCceEec-cCCccchHHHHHHHHHhh
Confidence 899999887 999999999999999 59999999998776666554 5666664221111 11111111221111 1
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCC
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLP 163 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p 163 (459)
......++++.+.++.. +||+||+| +.+.+..+|+..|+|++.+.+..... .|
T Consensus 77 ~~~~~~~~~~~~~l~~~--~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~------------------------~~ 129 (318)
T PF13528_consen 77 ARLARRIRREIRWLREF--RPDLVISD-FYPLAALAARRAGIPVIVISNQYWFL------------------------HP 129 (318)
T ss_pred HHHHHHHHHHHHHHHhc--CCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHcc------------------------cc
Confidence 12234444555555444 89999999 45557899999999999998765210 00
Q ss_pred CCCCCCCCCCCccccCCCCChHHHHHHHHHhhc--ccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccc
Q 012645 164 GLPSLASSDLPSFLAQPASNPAYLAAILEQFGS--LNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQI 241 (459)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~ 241 (459)
... ... . ......+.+.... +..++..+.-++. .. .....+..++||......
T Consensus 130 ~~~-~~~---------~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~------~~~~~~~~~~~p~~~~~~----- 184 (318)
T PF13528_consen 130 NFW-LPW---------D---QDFGRLIERYIDRYHFPPADRRLALSFY-PP------LPPFFRVPFVGPIIRPEI----- 184 (318)
T ss_pred cCC-cch---------h---hhHHHHHHHhhhhccCCcccceecCCcc-cc------ccccccccccCchhcccc-----
Confidence 000 000 0 0111222222221 2333333333332 00 011123556777665410
Q ss_pred cCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCchhhhhhc
Q 012645 242 AGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASE-KPFLWVVKENENKLPVEFVNSV 320 (459)
Q Consensus 242 ~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~-~~~v~~~~~~~~~~~~~~~~~~ 320 (459)
.... ..+++.|+|++|..... .++++++..+ +.+++. +.. . .+..
T Consensus 185 ------------------~~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~-~------~~~~ 230 (318)
T PF13528_consen 185 ------------------RELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN-A------ADPR 230 (318)
T ss_pred ------------------cccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC-c------cccc
Confidence 0000 12345899999997542 6677777766 566665 432 1 1113
Q ss_pred CCCceEEeee--cHHHHhcccCccceeccCchhhHHHhhhcCCeeecccc--ccchhhHHHHHHHhhhceEEeeecCCCc
Q 012645 321 GETGLVVRWC--NQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQ--FSDQPTNAKFVEEVWEVGVRAKKNRAGI 396 (459)
Q Consensus 321 ~~~v~v~~~~--p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~--~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 396 (459)
.+|+.+.++. ...++|+.+++ +|+|||+||++|++++|+|+|++|. ..||..||++++++ |+|..++.. +
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~~---~ 304 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQE---D 304 (318)
T ss_pred CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEcccc---c
Confidence 6889999876 45589977776 9999999999999999999999999 78999999999999 999999888 8
Q ss_pred ccHHHHHHHHHHH
Q 012645 397 VTGEELNKCVNEV 409 (459)
Q Consensus 397 ~~~~~l~~~i~~l 409 (459)
++++.|.++|+++
T Consensus 305 ~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 305 LTPERLAEFLERL 317 (318)
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999864
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.93 E-value=6.6e-24 Score=202.52 Aligned_cols=309 Identities=14% Similarity=0.111 Sum_probs=176.4
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCce-EEEcCCCCCCCCCCCCCCHHHHHHHHHHhc
Q 012645 9 HVLVLTYP-AQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVG-VEPISDGFDEGGFKQAPSVKAYLESFKTVG 86 (459)
Q Consensus 9 kil~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (459)
||++...| +.||+.|.++||++|++ ||+|+|+++......+...++. +...|. +........-+....+.......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~~~~ 78 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPG-IKLKGEDGKVNIVKTLRNKEYSP 78 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCC-ceEeecCCcCcHHHHHHhhcccc
Confidence 57787766 55999999999999999 9999999988866666666665 444331 11000001111222221100111
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCC
Q 012645 87 SRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLP 166 (459)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~ 166 (459)
...+.+..+.+++. +||+||+| +.+.+..+|+.+|||++.+..+.... .|+.
T Consensus 79 ~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------------------------~~~~- 130 (321)
T TIGR00661 79 KKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------------------------YPLK- 130 (321)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc------------------------CCcc-
Confidence 12333333433333 89999999 66668899999999999887643100 1110
Q ss_pred CCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccccCCcc
Q 012645 167 SLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIAGDSA 246 (459)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~~~~ 246 (459)
. +......+.+...+. ...+......+..... ..+ +..... .+
T Consensus 131 ---~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~p------~~~~~~--~~------- 173 (321)
T TIGR00661 131 ---T----------DLIVYPTMAALRIFN--ERCERFIVPDYPFPYT-------ICP------KIIKNM--EG------- 173 (321)
T ss_pred ---c----------chhHHHHHHHHHHhc--cccceEeeecCCCCCC-------CCc------cccccC--CC-------
Confidence 0 000001111111111 1122222222211000 000 000000 00
Q ss_pred CCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceE
Q 012645 247 YGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLV 326 (459)
Q Consensus 247 ~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v 326 (459)
.....+..++... .++.|++.+|+.. ...+++++++.+. +.+++... +...+ ..++|+.+
T Consensus 174 ------~~~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~-~~~~~----~~~~~v~~ 233 (321)
T TIGR00661 174 ------PLIRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY-EVAKN----SYNENVEI 233 (321)
T ss_pred ------cccchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC-CCCcc----ccCCCEEE
Confidence 0001112222221 3446777778743 2456777777653 23332222 11111 24578999
Q ss_pred Eeeec--HHHHhcccCccceeccCchhhHHHhhhcCCeeecccccc--chhhHHHHHHHhhhceEEeeecCCCcccHHHH
Q 012645 327 VRWCN--QFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFS--DQPTNAKFVEEVWEVGVRAKKNRAGIVTGEEL 402 (459)
Q Consensus 327 ~~~~p--~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l 402 (459)
.+|.| ..++|+.+++ +|||||++|++||+++|+|+|++|... ||..||..++++ |+|..++.. ++ ++
T Consensus 234 ~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~---~~---~~ 304 (321)
T TIGR00661 234 RRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYK---EL---RL 304 (321)
T ss_pred EECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChh---hH---HH
Confidence 99997 4478866666 999999999999999999999999854 899999999999 999999866 44 66
Q ss_pred HHHHHHHhcCh
Q 012645 403 NKCVNEVMDGE 413 (459)
Q Consensus 403 ~~~i~~ll~~~ 413 (459)
.+++.++++|+
T Consensus 305 ~~~~~~~~~~~ 315 (321)
T TIGR00661 305 LEAILDIRNMK 315 (321)
T ss_pred HHHHHhccccc
Confidence 66777777776
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=9.4e-23 Score=193.36 Aligned_cols=309 Identities=20% Similarity=0.221 Sum_probs=194.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEecCccccc--cCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRV-KATLATTHYTVKS--IHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKT 84 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh-~V~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (459)
|+|++...||.||+.|.++++++|.++|+ +|.+..+.+..+. ....++.++.++..-....... ......++.+..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~-~~~~~~~~~~~~ 79 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSL-KLLKAPFKLLKG 79 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcH-HHHHHHHHHHHH
Confidence 57899999999999999999999999999 5888877655544 3335888888863322111000 111111222211
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCc--hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccC
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLL--TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTL 162 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~--~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (459)
....+.+++++ +||+||.-..+ ..+..+|..+|||.+...... +
T Consensus 80 --~~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~---------------------------~ 125 (357)
T COG0707 80 --VLQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA---------------------------V 125 (357)
T ss_pred --HHHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEEEecCC---------------------------C
Confidence 13345566665 99999984333 457889999999999986644 4
Q ss_pred CCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeec-ccCCCccccccc
Q 012645 163 PGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIG-PLVPSAYLDQQI 241 (459)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vg-p~~~~~~~~~~~ 241 (459)
||+- .+...+.. +.+ ..+++..+ ......++..+| |..+++.
T Consensus 126 ~G~a--------------------nk~~~~~a------~~V-~~~f~~~~-----~~~~~~~~~~tG~Pvr~~~~----- 168 (357)
T COG0707 126 PGLA--------------------NKILSKFA------KKV-ASAFPKLE-----AGVKPENVVVTGIPVRPEFE----- 168 (357)
T ss_pred cchh--------------------HHHhHHhh------cee-eecccccc-----ccCCCCceEEecCcccHHhh-----
Confidence 4421 01111111 111 11111100 011111366666 3333320
Q ss_pred cCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHH-HHHHHHhC--CCcEEEEEeCCCCCCchhhhh
Q 012645 242 AGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDE-IARGLKAS--EKPFLWVVKENENKLPVEFVN 318 (459)
Q Consensus 242 ~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~-i~~a~~~~--~~~~v~~~~~~~~~~~~~~~~ 318 (459)
. .+.....+... .++++|+|.-||... ..++. +.+++..+ +..++...+... .+....
T Consensus 169 -----------~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga---~~ln~~v~~~~~~l~~~~~v~~~~G~~~---~~~~~~ 229 (357)
T COG0707 169 -----------E-LPAAEVRKDGR-LDKKTILVTGGSQGA---KALNDLVPEALAKLANRIQVIHQTGKND---LEELKS 229 (357)
T ss_pred -----------c-cchhhhhhhcc-CCCcEEEEECCcchh---HHHHHHHHHHHHHhhhCeEEEEEcCcch---HHHHHH
Confidence 1 11111112111 256799999999874 22333 33333333 356666665531 112221
Q ss_pred hcC-CC-ceEEeeecHH-HHhcccCccceeccCchhhHHHhhhcCCeeeccccc----cchhhHHHHHHHhhhceEEeee
Q 012645 319 SVG-ET-GLVVRWCNQF-EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQF----SDQPTNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 319 ~~~-~~-v~v~~~~p~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~----~DQ~~na~rv~~~~G~G~~~~~ 391 (459)
... .+ +.+.+|+.++ .+++.+|+ +||++|.+|+.|++++|+|.|.+|.- .||..||..+++. |.|..++.
T Consensus 230 ~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~ 306 (357)
T COG0707 230 AYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQ 306 (357)
T ss_pred HHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEecc
Confidence 221 22 6777898877 89988888 99999999999999999999999963 3899999999999 99999999
Q ss_pred cCCCcccHHHHHHHHHHHhcCh
Q 012645 392 NRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 392 ~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
. ++|++.+.+.|.++++++
T Consensus 307 ~---~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 307 S---ELTPEKLAELILRLLSNP 325 (357)
T ss_pred c---cCCHHHHHHHHHHHhcCH
Confidence 8 899999999999999985
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.7e-19 Score=175.35 Aligned_cols=320 Identities=16% Similarity=0.122 Sum_probs=190.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc--ccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHh
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT--VKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTV 85 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
|||+|++.+..||....+.||++|.++||+|++++.+.. ....+..|+.++.++..-.. .......+......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLR-----RKGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcC-----CCChHHHHHHHHHH
Confidence 899999999899999999999999999999999998653 23334458888777531000 01111111111111
Q ss_pred --chHHHHHHHHHhhcCCCCccEEEeCCC--chhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCccc
Q 012645 86 --GSRTLAEVILKYKDSESPVNCIVYDSL--LTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLT 161 (459)
Q Consensus 86 --~~~~~~~l~~~~~~~~~~~Dlvi~D~~--~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (459)
....+.+++++. +||+|++... ...+..+++..++|++......
T Consensus 77 ~~~~~~~~~~ik~~-----~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------------- 124 (357)
T PRK00726 77 LKGVLQARKILKRF-----KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------------------- 124 (357)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------------------
Confidence 011233344433 8999999863 2345667778899998642210
Q ss_pred CCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccc
Q 012645 162 LPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQI 241 (459)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~ 241 (459)
.|+ ...+... ..++.+++.+-..+ .. .+..++.++|+.+....+.
T Consensus 125 ~~~--------------------~~~r~~~------~~~d~ii~~~~~~~----~~--~~~~~i~vi~n~v~~~~~~--- 169 (357)
T PRK00726 125 VPG--------------------LANKLLA------RFAKKVATAFPGAF----PE--FFKPKAVVTGNPVREEILA--- 169 (357)
T ss_pred Ccc--------------------HHHHHHH------HHhchheECchhhh----hc--cCCCCEEEECCCCChHhhc---
Confidence 000 0111111 12233333222111 01 1123577888665442110
Q ss_pred cCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCC--cEEEEEeCCC-CCCchhhhh
Q 012645 242 AGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEK--PFLWVVKENE-NKLPVEFVN 318 (459)
Q Consensus 242 ~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~--~~v~~~~~~~-~~~~~~~~~ 318 (459)
+ .. ...-+...+++++|++..|+... ......+.+++.+... .+++.++... +.+.+.. +
T Consensus 170 ------------~-~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~-~ 232 (357)
T PRK00726 170 ------------L-AA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAY-A 232 (357)
T ss_pred ------------c-cc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHh-h
Confidence 0 00 00011112234466665555432 1122333366655433 3445555432 1111111 1
Q ss_pred hcCCCceEEeeec-HHHHhcccCccceeccCchhhHHHhhhcCCeeecccc----ccchhhHHHHHHHhhhceEEeeecC
Q 012645 319 SVGETGLVVRWCN-QFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQ----FSDQPTNAKFVEEVWEVGVRAKKNR 393 (459)
Q Consensus 319 ~~~~~v~v~~~~p-~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~----~~DQ~~na~rv~~~~G~G~~~~~~~ 393 (459)
..-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.|..+...
T Consensus 233 -~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~- 307 (357)
T PRK00726 233 -AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQS- 307 (357)
T ss_pred -cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEcc-
Confidence 222377789984 4589977777 9999999999999999999999996 36899999999999 999999877
Q ss_pred CCcccHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012645 394 AGIVTGEELNKCVNEVMDGERSQKIKRNVSKWR 426 (459)
Q Consensus 394 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 426 (459)
.++++.|.++|.++++|+ +.+++..+-+
T Consensus 308 --~~~~~~l~~~i~~ll~~~---~~~~~~~~~~ 335 (357)
T PRK00726 308 --DLTPEKLAEKLLELLSDP---ERLEAMAEAA 335 (357)
T ss_pred --cCCHHHHHHHHHHHHcCH---HHHHHHHHHH
Confidence 778999999999999997 5554444433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=2.5e-18 Score=166.73 Aligned_cols=310 Identities=16% Similarity=0.149 Sum_probs=184.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc--cccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV--KSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVG 86 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (459)
||++.+.++.||....+.||++|.++||+|++++..... ......|+++..++..-.. .......+.......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLR-----RKGSLKKLKAPFKLL 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcC-----CCChHHHHHHHHHHH
Confidence 689999999999999999999999999999999875432 1222246777776522110 011122222211111
Q ss_pred --hHHHHHHHHHhhcCCCCccEEEeCCC--chhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccC
Q 012645 87 --SRTLAEVILKYKDSESPVNCIVYDSL--LTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTL 162 (459)
Q Consensus 87 --~~~~~~l~~~~~~~~~~~Dlvi~D~~--~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (459)
...+..++++. +||+|+++.. ...+..+|+..|+|++...... .
T Consensus 76 ~~~~~~~~~i~~~-----~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~---------------------------~ 123 (350)
T cd03785 76 KGVLQARKILKKF-----KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA---------------------------V 123 (350)
T ss_pred HHHHHHHHHHHhc-----CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC---------------------------C
Confidence 12233444443 8999998653 3446778889999998632110 0
Q ss_pred CCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCcccccccc
Q 012645 163 PGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIA 242 (459)
Q Consensus 163 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~ 242 (459)
|+ .. .+.. ....+.+++.+-...+. .+ ..++.++|+.+....+.
T Consensus 124 ~~--------------------~~----~~~~--~~~~~~vi~~s~~~~~~-----~~-~~~~~~i~n~v~~~~~~---- 167 (350)
T cd03785 124 PG--------------------LA----NRLL--ARFADRVALSFPETAKY-----FP-KDKAVVTGNPVREEILA---- 167 (350)
T ss_pred cc--------------------HH----HHHH--HHhhCEEEEcchhhhhc-----CC-CCcEEEECCCCchHHhh----
Confidence 00 00 1111 12245555544332211 11 12466777654431110
Q ss_pred CCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh---CCCcEEEEEeCCC-CCCchhhhh
Q 012645 243 GDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA---SEKPFLWVVKENE-NKLPVEFVN 318 (459)
Q Consensus 243 ~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~---~~~~~v~~~~~~~-~~~~~~~~~ 318 (459)
+.+. ...+...+++++|++..|+.... ...+.+.+++.. .+..+++.++... +.+.+...+
T Consensus 168 -----------~~~~--~~~~~~~~~~~~i~~~~g~~~~~--~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~ 232 (350)
T cd03785 168 -----------LDRE--RARLGLRPGKPTLLVFGGSQGAR--AINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEE 232 (350)
T ss_pred -----------hhhh--HHhcCCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhc
Confidence 0010 11222223444666666665421 222223344433 3344555555432 112111111
Q ss_pred hcCCCceEEeee-cHHHHhcccCccceeccCchhhHHHhhhcCCeeecccc----ccchhhHHHHHHHhhhceEEeeecC
Q 012645 319 SVGETGLVVRWC-NQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQ----FSDQPTNAKFVEEVWEVGVRAKKNR 393 (459)
Q Consensus 319 ~~~~~v~v~~~~-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~----~~DQ~~na~rv~~~~G~G~~~~~~~ 393 (459)
..+|+++.+|+ ...++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+. |.|..++..
T Consensus 233 -~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~- 307 (350)
T cd03785 233 -LGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQE- 307 (350)
T ss_pred -cCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecC-
Confidence 24689999998 45589977777 9999999999999999999999985 35799999999999 999999865
Q ss_pred CCcccHHHHHHHHHHHhcCh
Q 012645 394 AGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 394 ~~~~~~~~l~~~i~~ll~~~ 413 (459)
..++++|.++|.++++|+
T Consensus 308 --~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 308 --ELTPERLAAALLELLSDP 325 (350)
T ss_pred --CCCHHHHHHHHHHHhcCH
Confidence 579999999999999887
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.81 E-value=4.5e-18 Score=153.58 Aligned_cols=333 Identities=17% Similarity=0.174 Sum_probs=204.5
Q ss_pred CCcEEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC-CCceEEEcCCCCCC--CCCCCCCCHHHH
Q 012645 6 ERVHVLVLTYP--AQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA-TTVGVEPISDGFDE--GGFKQAPSVKAY 78 (459)
Q Consensus 6 ~~~kil~~~~~--~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~-~g~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (459)
+.+||+|++.- +.||+.++..||.+|++. |.+|++++...-..-+.- .|++|+.+|.-... +..... +.-.-
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~-d~~~~ 86 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLV-DLDGD 86 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeee-ecCCC
Confidence 34599999985 889999999999999997 999999999877666655 69999999943221 111110 00011
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCC
Q 012645 79 LESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETV 158 (459)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 158 (459)
...+.+...+.+...++.+ +||++|+|.+-++ . -.++ .|..- ......+.+
T Consensus 87 l~e~~~~Rs~lil~t~~~f-----kPDi~IVd~~P~G-l--r~EL-~ptL~--------------yl~~~~t~~------ 137 (400)
T COG4671 87 LEETKKLRSQLILSTAETF-----KPDIFIVDKFPFG-L--RFEL-LPTLE--------------YLKTTGTRL------ 137 (400)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCCEEEEeccccc-h--hhhh-hHHHH--------------HHhhcCCcc------
Confidence 3444455455666677776 9999999977664 1 1111 11110 000000000
Q ss_pred cccCCCCCCCCCC---CCCccccCCCCChHHHHHHHHHhhcccCCceEEEc---chhHhhHHHHHHHhcCCCeeeecccC
Q 012645 159 PLTLPGLPSLASS---DLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCN---SFEELEKELLRAMLGLWPLVMIGPLV 232 (459)
Q Consensus 159 ~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~vgp~~ 232 (459)
-+..+ |.+......|........+.+++. .+.+. .|+.++..+.....-..++.|+|.+
T Consensus 138 --------vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~yD------~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~v- 202 (400)
T COG4671 138 --------VLGLRSIRDIPQELEADWRRAETVRLINRFYD------LVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFV- 202 (400)
T ss_pred --------eeehHhhhhchhhhccchhhhHHHHHHHHhhe------EEEEecCccccChhhcCCccHhhhhheeEeEEe-
Confidence 02222 222222222322333333333332 22332 2222221111111111358889977
Q ss_pred CCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-CCCc--EEEEEeCCC
Q 012645 233 PSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA-SEKP--FLWVVKENE 309 (459)
Q Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~-~~~~--~v~~~~~~~ 309 (459)
..... +. +.+ +... +++..|+||-|... ...+++...++|... .+.+ .+++++
T Consensus 203 q~~~~------------~~--~~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtG--- 258 (400)
T COG4671 203 QRSLP------------HL--PLP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTG--- 258 (400)
T ss_pred eccCc------------CC--CCC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeC---
Confidence 22100 00 000 0000 34458999888854 355666666666655 4444 444443
Q ss_pred CCCchh----hhhhcC--CCceEEeeecHH-HHhcccCccceeccCchhhHHHhhhcCCeeeccccc---cchhhHHHHH
Q 012645 310 NKLPVE----FVNSVG--ETGLVVRWCNQF-EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQF---SDQPTNAKFV 379 (459)
Q Consensus 310 ~~~~~~----~~~~~~--~~v~v~~~~p~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~---~DQ~~na~rv 379 (459)
...|.. +....+ +++.+..|-.+. .+++.++. +|+-||+||++|-|++|+|.|++|+. -||..-|.|+
T Consensus 259 P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl 336 (400)
T COG4671 259 PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRL 336 (400)
T ss_pred CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHH
Confidence 334433 333344 789999998766 89977777 99999999999999999999999985 3999999999
Q ss_pred HHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 380 EEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 380 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+++ |+.-++..+ .++++.+.++|...++-+
T Consensus 337 ~~L-GL~dvL~pe---~lt~~~La~al~~~l~~P 366 (400)
T COG4671 337 EEL-GLVDVLLPE---NLTPQNLADALKAALARP 366 (400)
T ss_pred Hhc-CcceeeCcc---cCChHHHHHHHHhcccCC
Confidence 999 999999998 899999999999999843
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=1.6e-16 Score=153.94 Aligned_cols=306 Identities=17% Similarity=0.141 Sum_probs=172.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc--cccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHh
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV--KSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTV 85 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
|||+|++.+..||+...+.||++|.++||+|++++.+... ...+..|++++.++..-.. .......+......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~-----~~~~~~~l~~~~~~ 75 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLR-----RKGSFRLIKTPLKL 75 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcC-----CCChHHHHHHHHHH
Confidence 6899999999999998889999999999999999874432 2223457877777522100 11122222221111
Q ss_pred --chHHHHHHHHHhhcCCCCccEEEeCCCc--hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCccc
Q 012645 86 --GSRTLAEVILKYKDSESPVNCIVYDSLL--TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLT 161 (459)
Q Consensus 86 --~~~~~~~l~~~~~~~~~~~Dlvi~D~~~--~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (459)
....+.+++++. +||+|++.... ..+..+++.+++|.+......
T Consensus 76 ~~~~~~l~~~i~~~-----~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------------- 123 (348)
T TIGR01133 76 LKAVFQARRILKKF-----KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA--------------------------- 123 (348)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC---------------------------
Confidence 112233444443 89999987543 335567888899987431100
Q ss_pred CCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccc
Q 012645 162 LPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQI 241 (459)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~ 241 (459)
.+ ....+.+. +..+.+++.+....+ .+ ...++|..+....+.
T Consensus 124 ~~--------------------~~~~~~~~------~~~d~ii~~~~~~~~-----~~----~~~~i~n~v~~~~~~--- 165 (348)
T TIGR01133 124 VP--------------------GLTNKLLS------RFAKKVLISFPGAKD-----HF----EAVLVGNPVRQEIRS--- 165 (348)
T ss_pred Cc--------------------cHHHHHHH------HHhCeeEECchhHhh-----cC----CceEEcCCcCHHHhc---
Confidence 00 00111111 234444443322111 11 234555433221000
Q ss_pred cCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh---CCCcEEEEEeCCCCCCchhhhh
Q 012645 242 AGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA---SEKPFLWVVKENENKLPVEFVN 318 (459)
Q Consensus 242 ~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~---~~~~~v~~~~~~~~~~~~~~~~ 318 (459)
+.. ....+.-.+++++|.+..|+... ......+.+++.. .+.++++..+..+ . +.+.+
T Consensus 166 ------------~~~--~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--~-~~l~~ 226 (348)
T TIGR01133 166 ------------LPV--PRERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND--L-EKVKN 226 (348)
T ss_pred ------------ccc--hhhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch--H-HHHHH
Confidence 000 01112111233345444455442 1222223344433 3455655444321 1 22221
Q ss_pred hcCC-C-ceEEeee--cHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccc---cchhhHHHHHHHhhhceEEeee
Q 012645 319 SVGE-T-GLVVRWC--NQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQF---SDQPTNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 319 ~~~~-~-v~v~~~~--p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~---~DQ~~na~rv~~~~G~G~~~~~ 391 (459)
.... + ..++.+. +..++++.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+++. |.|..++.
T Consensus 227 ~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~ 303 (348)
T TIGR01133 227 VYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ 303 (348)
T ss_pred HHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec
Confidence 1111 1 1222333 45689978887 99999988999999999999999863 4688899999999 99998876
Q ss_pred cCCCcccHHHHHHHHHHHhcCh
Q 012645 392 NRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 392 ~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
. ..+++.|.+++.++++|+
T Consensus 304 ~---~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 304 K---ELLPEKLLEALLKLLLDP 322 (348)
T ss_pred c---cCCHHHHHHHHHHHHcCH
Confidence 6 678999999999999987
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.75 E-value=4e-16 Score=152.15 Aligned_cols=346 Identities=11% Similarity=0.050 Sum_probs=193.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCC----ceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATT----VGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
.||+|++.++-||+.|. +|+++|+++|++|.|++.... .+++.| +++..++ . ..+...+..+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~----v------~G~~~~l~~~~ 72 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELS----V------MGLREVLGRLG 72 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhh----h------ccHHHHHHHHH
Confidence 58999999999999999 999999999999999987632 233333 3333332 1 11111222222
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEe-CCCchh--HHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcc
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVY-DSLLTW--ALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPL 160 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~-D~~~~~--~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (459)
.. ...+.++.+.+++. +||+||. |..++. ...+|+.+|||++.+.+ |
T Consensus 73 ~~-~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P-------------------------- 122 (385)
T TIGR00215 73 RL-LKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-P-------------------------- 122 (385)
T ss_pred HH-HHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-C--------------------------
Confidence 21 11222333333333 8999985 533333 23388899999997631 1
Q ss_pred cCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC-CCeeeecccCCCccccc
Q 012645 161 TLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL-WPLVMIGPLVPSAYLDQ 239 (459)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~ 239 (459)
. .+.|. .+. .+.+.+.. +.+++.. + .+.. .+... .+..++|.-+.+...
T Consensus 123 ---~--------~waw~--~~~----~r~l~~~~------d~v~~~~-~-~e~~---~~~~~g~~~~~vGnPv~~~~~-- 172 (385)
T TIGR00215 123 ---Q--------VWAWR--KWR----AKKIEKAT------DFLLAIL-P-FEKA---FYQKKNVPCRFVGHPLLDAIP-- 172 (385)
T ss_pred ---c--------HhhcC--cch----HHHHHHHH------hHhhccC-C-CcHH---HHHhcCCCEEEECCchhhhcc--
Confidence 0 00000 111 11222211 2112111 1 1111 11211 246678843322100
Q ss_pred cccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEeCCC-CCCc
Q 012645 240 QIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS-----EKPFLWVVKENE-NKLP 313 (459)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~-----~~~~v~~~~~~~-~~~~ 313 (459)
...+..++..+-+.-.+++++|.+.-||....-......+++++..+ +.++++...... ...-
T Consensus 173 -----------~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~ 241 (385)
T TIGR00215 173 -----------LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQF 241 (385)
T ss_pred -----------ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence 00011222332233334556888878887542123344455444432 334555443321 0000
Q ss_pred hhhhhhcCCCceEEeee-cHHHHhcccCccceeccCchhhHHHhhhcCCeeecc----cccc---------chhhHHHHH
Q 012645 314 VEFVNSVGETGLVVRWC-NQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAV----PQFS---------DQPTNAKFV 379 (459)
Q Consensus 314 ~~~~~~~~~~v~v~~~~-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~----P~~~---------DQ~~na~rv 379 (459)
+.+.+....+..+..+. ....+++.+|+ +|+-.|..|+ |++++|+|+|++ |+.. +|..|+..+
T Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil 318 (385)
T TIGR00215 242 EQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL 318 (385)
T ss_pred HHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh
Confidence 11111121122232222 33468877887 9999999988 999999999999 7632 388899999
Q ss_pred HHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh----h-hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012645 380 EEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE----R-SQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVV 448 (459)
Q Consensus 380 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~----~-~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~ 448 (459)
... ++...+... ++|++.|.+.+.++++|+ + .+.+++...++.+.+. +.|.+..+++.+++
T Consensus 319 ~~~-~~~pel~q~---~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 319 ANR-LLVPELLQE---ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAVLE 384 (385)
T ss_pred cCC-ccchhhcCC---CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHhh
Confidence 999 999998877 899999999999999986 3 3566666666666653 34666666665553
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=9.6e-16 Score=142.64 Aligned_cols=260 Identities=14% Similarity=0.135 Sum_probs=152.7
Q ss_pred EEEEEcC----CCccCHHHHHHHHHHHHhCCCeEEEEecCccc---cccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 9 HVLVLTY----PAQGHINPLLQFAKRLASKRVKATLATTHYTV---KSIHATTVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 9 kil~~~~----~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
||+|.+- -+.||+.++++||++|+++||+|+|++..... +.+++.|+....+++.-. .
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~------------~--- 65 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESS------------R--- 65 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCc------------h---
Confidence 3555543 38999999999999999999999999987543 456678999888864311 0
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhH--HHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCc
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWA--LDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVP 159 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~--~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 159 (459)
..+ ...+.+++++. +||+||+|...... ....+..+.+.+.+.-...
T Consensus 66 ~~d--~~~~~~~l~~~-----~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~------------------------ 114 (279)
T TIGR03590 66 YDD--ALELINLLEEE-----KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD------------------------ 114 (279)
T ss_pred hhh--HHHHHHHHHhc-----CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC------------------------
Confidence 000 01233344443 89999999865433 2233345566555432110
Q ss_pred ccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHH-HHHHHhcCCCeeeecc---cCCCc
Q 012645 160 LTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKE-LLRAMLGLWPLVMIGP---LVPSA 235 (459)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~vgp---~~~~~ 235 (459)
- ...+|.++..+.. .+.. +....+. ......|| ++.+.
T Consensus 115 --~----------------------------------~~~~D~vin~~~~-~~~~~y~~~~~~-~~~~l~G~~Y~~lr~e 156 (279)
T TIGR03590 115 --R----------------------------------PHDCDLLLDQNLG-ADASDYQGLVPA-NCRLLLGPSYALLREE 156 (279)
T ss_pred --C----------------------------------CcCCCEEEeCCCC-cCHhHhcccCcC-CCeEEecchHHhhhHH
Confidence 0 0012222211111 1100 0000000 12456665 32221
Q ss_pred cccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCc
Q 012645 236 YLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS--EKPFLWVVKENENKLP 313 (459)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~--~~~~v~~~~~~~~~~~ 313 (459)
.. + ........+..+.|+|++|...... ....+++++... +.++.++++... ...
T Consensus 157 F~---------------~-----~~~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~-~~~ 213 (279)
T TIGR03590 157 FY---------------Q-----LATANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN-PNL 213 (279)
T ss_pred HH---------------H-----hhHhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC-cCH
Confidence 00 0 0000001112358999999765422 445566777653 456677776542 222
Q ss_pred hhhhhh--cCCCceEEeeecHH-HHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHH
Q 012645 314 VEFVNS--VGETGLVVRWCNQF-EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKF 378 (459)
Q Consensus 314 ~~~~~~--~~~~v~v~~~~p~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~r 378 (459)
+.+.+. ..+|+.+..++++. ++|+.+++ +|++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 214 ~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 214 DELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 222221 24689999999987 89988888 999999 9999999999999999999999999975
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=2.9e-14 Score=139.78 Aligned_cols=133 Identities=19% Similarity=0.282 Sum_probs=95.9
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEEeCCCCCCchhhh---hhcCCCceEEeeecHH-HHhcccCcc
Q 012645 268 EKSVIYVSFGSMADIAANQVDEIARGLKA-SEKPFLWVVKENENKLPVEFV---NSVGETGLVVRWCNQF-EVLAHQAVG 342 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~-~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~v~~~~p~~-~lL~~~~~~ 342 (459)
++++|++..|+.... ..+..+++++.. .+.+++++.+.. ..+.+.+. ...++|+++.+|+++. ++++.+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~-~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~- 276 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN-EALKQSLEDLQETNPDALKVFGYVENIDELFRVTSC- 276 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC-HHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE-
Confidence 455777777876532 234556666654 345666665532 11112221 1233689999999876 89988888
Q ss_pred ceeccCchhhHHHhhhcCCeeecc-ccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 343 CFITHCGWNSILEGLSLGVAVVAV-PQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 343 ~~I~HGG~gs~~eal~~GvP~li~-P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+|+.+|..|+.||+++|+|+|+. |....|..|+..+++. |+|... .+++.|.++|.++++|+
T Consensus 277 -~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-------~~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 277 -MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-------RDDEEVFAKTEALLQDD 339 (380)
T ss_pred -EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-------CCHHHHHHHHHHHHCCH
Confidence 99999988999999999999885 6667778899999999 988643 35689999999999987
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.61 E-value=1.5e-13 Score=134.88 Aligned_cols=311 Identities=13% Similarity=0.091 Sum_probs=156.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc--cccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHh
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY--TVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTV 85 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
|||+|++.++.||+.|.. ++++|+++++++.+++... ..+..-..++.++.++- ......+..+...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~g~~~~~~~~~~~ 70 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAV----------MGLVEVLPRLPRL 70 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhh----------ccHHHHHHHHHHH
Confidence 799999999999999999 9999999888877776433 11111112333332221 1111222221111
Q ss_pred --chHHHHHHHHHhhcCCCCccEEEeCCC-chhH--HHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcc
Q 012645 86 --GSRTLAEVILKYKDSESPVNCIVYDSL-LTWA--LDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPL 160 (459)
Q Consensus 86 --~~~~~~~l~~~~~~~~~~~Dlvi~D~~-~~~~--~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (459)
....+..+++++ +||+|+.-.. ..+. ..++++.|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~-----kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~------------------------- 120 (380)
T PRK00025 71 LKIRRRLKRRLLAE-----PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV------------------------- 120 (380)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch-------------------------
Confidence 122344555554 8999876322 2333 3446788999887532110
Q ss_pred cCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC-CCeeeecccCCCccccc
Q 012645 161 TLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL-WPLVMIGPLVPSAYLDQ 239 (459)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~ 239 (459)
+. +. . ....+. .+..+.+++.+-...+ .+... -++.++|.......
T Consensus 121 -------~~------~~------~---~~~~~~---~~~~d~i~~~~~~~~~-----~~~~~g~~~~~~G~p~~~~~--- 167 (380)
T PRK00025 121 -------WA------WR------Q---GRAFKI---AKATDHVLALFPFEAA-----FYDKLGVPVTFVGHPLADAI--- 167 (380)
T ss_pred -------hh------cC------c---hHHHHH---HHHHhhheeCCccCHH-----HHHhcCCCeEEECcCHHHhc---
Confidence 00 00 0 000111 1122333333322111 11111 13667773322210
Q ss_pred cccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCCCCCch
Q 012645 240 QIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA-----SEKPFLWVVKENENKLPV 314 (459)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~-----~~~~~v~~~~~~~~~~~~ 314 (459)
...+.......-+.-.+++++|++..||...........+++++.. .+.+++++.+... ..+
T Consensus 168 -----------~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~--~~~ 234 (380)
T PRK00025 168 -----------PLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK--RRE 234 (380)
T ss_pred -----------ccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh--hHH
Confidence 0001122232223322334566666676543212223444554433 2345666543211 111
Q ss_pred hhhhhc----CCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeecccccc--------chhhH-----HH
Q 012645 315 EFVNSV----GETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFS--------DQPTN-----AK 377 (459)
Q Consensus 315 ~~~~~~----~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~--------DQ~~n-----a~ 377 (459)
.+.+.. .-++.+.+- .-..+++.+|+ +|+.+|.+++ ||+++|+|+|++|-.. .|..| +.
T Consensus 235 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (380)
T PRK00025 235 QIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPN 310 (380)
T ss_pred HHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHH
Confidence 222111 123333221 23478877888 9999998887 9999999999985321 22222 23
Q ss_pred HHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 378 FVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 378 rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
.++.. +++..+... ..+++.|.+.+.++++|+
T Consensus 311 ~~~~~-~~~~~~~~~---~~~~~~l~~~i~~ll~~~ 342 (380)
T PRK00025 311 LLAGR-ELVPELLQE---EATPEKLARALLPLLADG 342 (380)
T ss_pred HhcCC-CcchhhcCC---CCCHHHHHHHHHHHhcCH
Confidence 33333 444444444 789999999999999998
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=4e-13 Score=131.86 Aligned_cols=134 Identities=23% Similarity=0.339 Sum_probs=95.8
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHH-Hh-CCCcEEEEEeCCCCCCchhhhhh--cCCCceEEeeecHH-HHhcccCc
Q 012645 267 PEKSVIYVSFGSMADIAANQVDEIARGL-KA-SEKPFLWVVKENENKLPVEFVNS--VGETGLVVRWCNQF-EVLAHQAV 341 (459)
Q Consensus 267 ~~~~~V~vs~Gs~~~~~~~~~~~i~~a~-~~-~~~~~v~~~~~~~~~~~~~~~~~--~~~~v~v~~~~p~~-~lL~~~~~ 341 (459)
+++++|++..|+.... ..+..+++++ +. .+.+++++.+.+. .+.+.+.+. ..+++.+.+|+++. ++++.+|+
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~-~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl 276 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSK-ELKRSLTAKFKSNENVLILGYTKHMNEWMASSQL 276 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCH-HHHHHHHHHhccCCCeEEEeccchHHHHHHhhhE
Confidence 3456888888887631 2344455553 32 3456666655321 111222211 23578888999766 79988888
Q ss_pred cceeccCchhhHHHhhhcCCeeecc-ccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 342 GCFITHCGWNSILEGLSLGVAVVAV-PQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 342 ~~~I~HGG~gs~~eal~~GvP~li~-P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+|+..|..|+.||+++|+|+|++ |....|..|+..+++. |+|... -+.+++.++|.++++|+
T Consensus 277 --~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~-------~~~~~l~~~i~~ll~~~ 339 (391)
T PRK13608 277 --MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIA-------DTPEEAIKIVASLTNGN 339 (391)
T ss_pred --EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEe-------CCHHHHHHHHHHHhcCH
Confidence 99998888999999999999998 6666677899999999 999653 25788999999999886
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=3.3e-16 Score=134.83 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=97.2
Q ss_pred EEEEEeCCcccCC-HHHHHHHHHHHHh--CCCcEEEEEeCCC-CCCchhhhhhcCCCceEEeeec-HHHHhcccCcccee
Q 012645 271 VIYVSFGSMADIA-ANQVDEIARGLKA--SEKPFLWVVKENE-NKLPVEFVNSVGETGLVVRWCN-QFEVLAHQAVGCFI 345 (459)
Q Consensus 271 ~V~vs~Gs~~~~~-~~~~~~i~~a~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~v~~~~p-~~~lL~~~~~~~~I 345 (459)
+|+|+.||..... ...+..+...+.. ...+++++.+... ......+ .....++.+.+|++ ..++++.+|+ +|
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~aDl--vI 77 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKV-ENFNPNVKVFGFVDNMAELMAAADL--VI 77 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCH-CCTTCCCEEECSSSSHHHHHHHHSE--EE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHH-hccCCcEEEEechhhHHHHHHHcCE--EE
Confidence 5899999875311 1112222333222 2467888777542 1111111 11236899999999 6699988988 99
Q ss_pred ccCchhhHHHhhhcCCeeecccccc----chhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 346 THCGWNSILEGLSLGVAVVAVPQFS----DQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 346 ~HGG~gs~~eal~~GvP~li~P~~~----DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
||||.||+.|++++|+|+|++|... +|..||..+++. |+|..+... ..+.+.|.+.|.++++++
T Consensus 78 s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~---~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 78 SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDES---ELNPEELAEAIEELLSDP 145 (167)
T ss_dssp ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC---C-SCCCHHHHHHCHCCCH
T ss_pred eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcc---cCCHHHHHHHHHHHHcCc
Confidence 9999999999999999999999988 999999999999 999999987 788999999999999987
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.48 E-value=1.4e-11 Score=120.79 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=95.3
Q ss_pred hhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh---------CCCcEEEEEeCCCCCCchhhhhh-cCCCceEEe
Q 012645 259 CMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA---------SEKPFLWVVKENENKLPVEFVNS-VGETGLVVR 328 (459)
Q Consensus 259 l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~---------~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~v~~ 328 (459)
+.+-+.-.+++++|++..|+..... +..+++++.. .+..++++++.+. .+.+.+.+. ...++++.+
T Consensus 196 ~r~~~gl~~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-~~~~~L~~~~~~~~v~~~G 271 (382)
T PLN02605 196 LRRELGMDEDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNK-KLQSKLESRDWKIPVKVRG 271 (382)
T ss_pred HHHHcCCCCCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCH-HHHHHHHhhcccCCeEEEe
Confidence 4433333345567777666654322 2223333322 2345566665431 111122211 134688889
Q ss_pred eecHH-HHhcccCccceeccCchhhHHHhhhcCCeeeccccccchh-hHHHHHHHhhhceEEeeecCCCcccHHHHHHHH
Q 012645 329 WCNQF-EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQP-TNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCV 406 (459)
Q Consensus 329 ~~p~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~-~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i 406 (459)
|+++. ++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|... -+++.|.++|
T Consensus 272 ~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i 341 (382)
T PLN02605 272 FVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIV 341 (382)
T ss_pred ccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHH
Confidence 99866 89988888 999999999999999999999998766675 799999999 998643 4688999999
Q ss_pred HHHhcC-h
Q 012645 407 NEVMDG-E 413 (459)
Q Consensus 407 ~~ll~~-~ 413 (459)
.++++| +
T Consensus 342 ~~ll~~~~ 349 (382)
T PLN02605 342 AEWFGDKS 349 (382)
T ss_pred HHHHcCCH
Confidence 999987 5
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.48 E-value=5.3e-14 Score=117.17 Aligned_cols=122 Identities=22% Similarity=0.268 Sum_probs=81.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHh--ch
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTV--GS 87 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 87 (459)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++.|++|++++.. ... ................ ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~ 77 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGD--SRL-PRSLEPLANLRRLARLIRGL 77 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSC--GGG-GHHHHHHHHHHCHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCC--cCc-CcccchhhhhhhHHHHhhhh
Confidence 789999999999999999999999999999999999999999999999999754 000 0000011111111111 00
Q ss_pred HHHHHHHHHhh-----c--CCCCccEEEeCCCchhHHHHHHHcCCceEEEccch
Q 012645 88 RTLAEVILKYK-----D--SESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 88 ~~~~~l~~~~~-----~--~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~ 134 (459)
..+...++... . .....|+++.+.....+..+|+++|||++.....|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 78 EEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 11112222211 1 11257888889888889999999999999988766
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.41 E-value=1.2e-10 Score=113.83 Aligned_cols=318 Identities=17% Similarity=0.080 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHh--CCCeEE---EEecCcccc--ccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHH-hchHHH--H
Q 012645 22 NPLLQFAKRLAS--KRVKAT---LATTHYTVK--SIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKT-VGSRTL--A 91 (459)
Q Consensus 22 ~p~~~la~~L~~--~Gh~V~---~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~ 91 (459)
.=.++||++|++ .|++|. +++.....+ .+...| .+..+|. +... .......+..... .....+ .
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~s----gg~~-~~~~~~~~~~~~~gl~~~~~~~~ 84 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELPS----GGFS-YQSLRGLLRDLRAGLVGLTLGQW 84 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCCC----CCcc-CCCHHHHHHHHHhhHHHHHHHHH
Confidence 345778999988 699999 999875432 233345 5555552 2111 1233344443333 222211 1
Q ss_pred HHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCCCCCCC
Q 012645 92 EVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLPSLASS 171 (459)
Q Consensus 92 ~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~ 171 (459)
.+++++ ..+||+||.=--+. ...+|...|+|++++.+.-.-. .+......+.+ +-+..+||.
T Consensus 85 ~~~~~~---~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~------~~~~~~~~~~~--~~~~~~~G~------ 146 (396)
T TIGR03492 85 RALRKW---AKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY------YWESGPRRSPS--DEYHRLEGS------ 146 (396)
T ss_pred HHHHHH---hhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce------eecCCCCCccc--hhhhccCCC------
Confidence 233333 23789998654444 8888999999999965532100 00000000000 000001111
Q ss_pred CCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC-CCeeeecc-cCCCccccccccCCccCCC
Q 012645 172 DLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL-WPLVMIGP-LVPSAYLDQQIAGDSAYGA 249 (459)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~vgp-~~~~~~~~~~~~~~~~~g~ 249 (459)
.+..| + ..+. ..+.++.+.+++-. .. +.+... -++.++|. +......
T Consensus 147 ----------~~~p~-e-~n~l--~~~~a~~v~~~~~~--t~---~~l~~~g~k~~~vGnPv~d~l~~------------ 195 (396)
T TIGR03492 147 ----------LYLPW-E-RWLM--RSRRCLAVFVRDRL--TA---RDLRRQGVRASYLGNPMMDGLEP------------ 195 (396)
T ss_pred ----------ccCHH-H-HHHh--hchhhCEEeCCCHH--HH---HHHHHCCCeEEEeCcCHHhcCcc------------
Confidence 11112 1 0111 11334555544422 21 223221 26999994 4433100
Q ss_pred CCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC----CCcEEEEEeCCC--CCCchhhhh-hc--
Q 012645 250 NIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS----EKPFLWVVKENE--NKLPVEFVN-SV-- 320 (459)
Q Consensus 250 ~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~----~~~~v~~~~~~~--~~~~~~~~~-~~-- 320 (459)
. .. .-+ .++++.|.+--||....-...+..+++++..+ +..+++.+.... ..+...+.+ ..
T Consensus 196 ----~-~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~ 265 (396)
T TIGR03492 196 ----P-ER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQL 265 (396)
T ss_pred ----c-cc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCcee
Confidence 0 00 011 12345888888987543333344555555553 566777763321 111111110 00
Q ss_pred ------------CCCceEEeeecH-HHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHh---hh
Q 012645 321 ------------GETGLVVRWCNQ-FEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEV---WE 384 (459)
Q Consensus 321 ------------~~~v~v~~~~p~-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~---~G 384 (459)
.+++.+..+..+ .++++.+++ +|+-.|..| .|++..|+|+|++|....|. ||...++. .|
T Consensus 266 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g 341 (396)
T TIGR03492 266 EGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLG 341 (396)
T ss_pred cCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcC
Confidence 123455555544 489988888 999999766 99999999999999766675 98776662 15
Q ss_pred ceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 385 VGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 385 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
.+..+. ..+.+.|.+++.++++|+
T Consensus 342 ~~~~l~-----~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 342 GSVFLA-----SKNPEQAAQVVRQLLADP 365 (396)
T ss_pred CEEecC-----CCCHHHHHHHHHHHHcCH
Confidence 455554 455699999999999987
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.40 E-value=1.1e-09 Score=106.14 Aligned_cols=316 Identities=15% Similarity=0.097 Sum_probs=164.5
Q ss_pred EEEEEcC---CC-ccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-CCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 9 HVLVLTY---PA-QGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-TTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 9 kil~~~~---~~-~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
||++++. |. .|+...+..|+++|+++||+|++++.......-.. ....+...+..... .......
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--- 70 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYP-------EIRLALP--- 70 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCccc-------ceEeccc---
Confidence 4566552 33 79999999999999999999999998754322111 11111111100000 0000000
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCc---hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcc
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLL---TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPL 160 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~---~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (459)
....+...++.. +||+|+++... ..+..++++.++|++...+...... ...
T Consensus 71 --~~~~~~~~~~~~-----~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~---------------- 124 (364)
T cd03814 71 --PRRRVRRLLDAF-----APDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEY---LRY---------------- 124 (364)
T ss_pred --chhhHHHHHHhc-----CCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHH---hhh----------------
Confidence 011233333433 89999876433 2356778889999988655331100 000
Q ss_pred cCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCcccccc
Q 012645 161 TLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQ 240 (459)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~ 240 (459)
. .... .........+. .....+.+++.+....+. ... ....++..+.+.+....+..
T Consensus 125 -------~----~~~~------~~~~~~~~~~~--~~~~~d~i~~~s~~~~~~-~~~--~~~~~~~~~~~g~~~~~~~~- 181 (364)
T cd03814 125 -------Y----GLGP------LSWLAWAYLRW--FHNRADRVLVPSPSLADE-LRA--RGFRRVRLWPRGVDTELFHP- 181 (364)
T ss_pred -------c----ccch------HhHhhHHHHHH--HHHhCCEEEeCCHHHHHH-Hhc--cCCCceeecCCCccccccCc-
Confidence 0 0000 00010111111 124567777776654431 110 11123333333222211100
Q ss_pred ccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh-CCCcEEEEEeCCCCCCchhhhh
Q 012645 241 IAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMAD-IAANQVDEIARGLKA-SEKPFLWVVKENENKLPVEFVN 318 (459)
Q Consensus 241 ~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~-~~~~~v~~~~~~~~~~~~~~~~ 318 (459)
..........+- ..++.+++..|+... -..+.+..++..+.. .+..+++...... .+.+.
T Consensus 182 -----------~~~~~~~~~~~~---~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~---~~~~~- 243 (364)
T cd03814 182 -----------RRRDEALRARLG---PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA---RARLE- 243 (364)
T ss_pred -----------ccccHHHHHHhC---CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch---HHHHh-
Confidence 000011112221 223466777777643 223333333333332 2345554443221 11111
Q ss_pred hcCCCceEEeeecHHH---HhcccCccceeccCc----hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeee
Q 012645 319 SVGETGLVVRWCNQFE---VLAHQAVGCFITHCG----WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 319 ~~~~~v~v~~~~p~~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~ 391 (459)
....|+.+.+++++.+ +++.+++ +|+.+. .+++.||+++|+|+|+.+.. .+...++.. +.|....
T Consensus 244 ~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~- 315 (364)
T cd03814 244 ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVE- 315 (364)
T ss_pred ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcC-
Confidence 2457899999998764 7877777 886654 37899999999999987754 355667777 8887776
Q ss_pred cCCCcccHHHHHHHHHHHhcCh
Q 012645 392 NRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 392 ~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
..+.+++.+++.++++|+
T Consensus 316 ----~~~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 316 ----PGDAEAFAAALAALLADP 333 (364)
T ss_pred ----CCCHHHHHHHHHHHHcCH
Confidence 467788999999999987
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.39 E-value=1.8e-09 Score=108.75 Aligned_cols=336 Identities=14% Similarity=0.059 Sum_probs=169.8
Q ss_pred CCCcEEEEEcCCC-----ccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCC-CCCCCCCCCCCHHHH
Q 012645 5 RERVHVLVLTYPA-----QGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDG-FDEGGFKQAPSVKAY 78 (459)
Q Consensus 5 ~~~~kil~~~~~~-----~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (459)
+++|||+++..++ .|=-..+..+++.|.++||+|++++....... +..|+..+..... ++. .....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~~g~~v~~~~~~~~~~-----~~~~~-- 127 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ-EFHGAKVIGSWSFPCPF-----YQKVP-- 127 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-cccCceeeccCCcCCcc-----CCCce--
Confidence 6789999986543 34456889999999999999999998643211 1124433322110 000 00000
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCc---hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCC
Q 012645 79 LESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLL---TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQ 155 (459)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~---~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~ 155 (459)
..+ .....+..++++. +||+|.+.... ..+..+++.+|+|+|...+......
T Consensus 128 -~~~--~~~~~l~~~i~~~-----kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~----------------- 182 (465)
T PLN02871 128 -LSL--ALSPRIISEVARF-----KPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVY----------------- 182 (465)
T ss_pred -eec--cCCHHHHHHHHhC-----CCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhh-----------------
Confidence 000 0111233444443 89999765432 2345567889999998654321000
Q ss_pred CCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHH-hcCCCeeeecccCCC
Q 012645 156 ETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAM-LGLWPLVMIGPLVPS 234 (459)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~vgp~~~~ 234 (459)
.+. .. . ........ .+.+. ..+.++.+++.+....+. ..... ....++..+..-++.
T Consensus 183 ------~~~---~~---~------~~~~~~~~-~~~r~--~~~~ad~ii~~S~~~~~~-l~~~~~~~~~kv~vi~nGvd~ 240 (465)
T PLN02871 183 ------IPR---YT---F------SWLVKPMW-DIIRF--LHRAADLTLVTSPALGKE-LEAAGVTAANRIRVWNKGVDS 240 (465)
T ss_pred ------hhc---cc---c------hhhHHHHH-HHHHH--HHhhCCEEEECCHHHHHH-HHHcCCCCcCeEEEeCCccCc
Confidence 000 00 0 00000111 11111 124567777666443222 11111 001123322221211
Q ss_pred ccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCc
Q 012645 235 AYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS-EKPFLWVVKENENKLP 313 (459)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~-~~~~v~~~~~~~~~~~ 313 (459)
..+.. .....+...-+....++.++++..|+... ...+..++++++.. +.+++++..+ ...
T Consensus 241 ~~f~p-------------~~~~~~~~~~~~~~~~~~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G---~~~ 302 (465)
T PLN02871 241 ESFHP-------------RFRSEEMRARLSGGEPEKPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDG---PYR 302 (465)
T ss_pred cccCC-------------ccccHHHHHHhcCCCCCCeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCC---hHH
Confidence 10000 00111122222111222356667788653 23455567777664 4555544332 222
Q ss_pred hhhhhhc-CCCceEEeeecHH---HHhcccCccceeccCc----hhhHHHhhhcCCeeeccccccchhhHHHHHHH---h
Q 012645 314 VEFVNSV-GETGLVVRWCNQF---EVLAHQAVGCFITHCG----WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEE---V 382 (459)
Q Consensus 314 ~~~~~~~-~~~v~v~~~~p~~---~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~---~ 382 (459)
+.+.+.. ..+|.+.+++|+. .+++.+|+ +|.-.. ..++.||+++|+|+|+.... .....++. -
T Consensus 303 ~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~ 376 (465)
T PLN02871 303 EELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG 376 (465)
T ss_pred HHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC
Confidence 2222211 3578888999855 47877887 775432 34788999999999976543 23344455 5
Q ss_pred hhceEEeeecCCCcccHHHHHHHHHHHhcChh-hHHHHHHHHHH
Q 012645 383 WEVGVRAKKNRAGIVTGEELNKCVNEVMDGER-SQKIKRNVSKW 425 (459)
Q Consensus 383 ~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l 425 (459)
+.|..++ .-+++++.++|.++++|++ .+.+.+++++.
T Consensus 377 -~~G~lv~-----~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 414 (465)
T PLN02871 377 -KTGFLYT-----PGDVDDCVEKLETLLADPELRERMGAAAREE 414 (465)
T ss_pred -CceEEeC-----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 6777776 3578999999999999872 13344444443
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.34 E-value=3.4e-09 Score=102.47 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHh---CCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHH---HHhcccCc
Q 012645 268 EKSVIYVSFGSMADIAANQVDEIARGLKA---SEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQF---EVLAHQAV 341 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~---~lL~~~~~ 341 (459)
.++.+++..|+..... ....++++++. .+.++++...... ............++.+.+++++. .+++.+++
T Consensus 189 ~~~~~i~~~G~~~~~k--~~~~li~~~~~l~~~~~~l~i~G~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 265 (359)
T cd03823 189 GGRLRFGFIGQLTPHK--GVDLLLEAFKRLPRGDIELVIVGNGLE-LEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV 265 (359)
T ss_pred CCceEEEEEecCcccc--CHHHHHHHHHHHHhcCcEEEEEcCchh-hhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE
Confidence 3446777788865321 23334444443 3555555433221 11011111234788899999755 46877777
Q ss_pred cceec----cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 342 GCFIT----HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 342 ~~~I~----HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+|+ ..|. .++.||+++|+|+|+.+. ......++.. +.|.... .-+.+++.+++.++++|+
T Consensus 266 --~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~-----~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 266 --LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFP-----PGDAEDLAAALERLIDDP 330 (359)
T ss_pred --EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEEC-----CCCHHHHHHHHHHHHhCh
Confidence 773 2344 479999999999998654 3456666666 6787776 456899999999999987
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.34 E-value=1.7e-09 Score=105.65 Aligned_cols=331 Identities=17% Similarity=0.076 Sum_probs=165.5
Q ss_pred EEEEEcCCC----ccCHHHHHHHHHHHHhCCCeEEEEecCccccccC---------CCCceEEEcCCCCCCCCCCCCCCH
Q 012645 9 HVLVLTYPA----QGHINPLLQFAKRLASKRVKATLATTHYTVKSIH---------ATTVGVEPISDGFDEGGFKQAPSV 75 (459)
Q Consensus 9 kil~~~~~~----~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~ 75 (459)
||++++... .|+......++++|+++||+|++++......... ..++.+..++..... ....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 75 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYK-----KNGL 75 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCC-----ccch
Confidence 567776532 5899999999999999999999998765433322 146666665532111 1111
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCc----hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCC
Q 012645 76 KAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLL----TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTL 151 (459)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~----~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 151 (459)
...+.............+.. ...+||+|++.... ..+..++...++|++...+...... .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-~----------- 139 (394)
T cd03794 76 LKRLLNYLSFALSALLALLK----RRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPES-A----------- 139 (394)
T ss_pred HHHHHhhhHHHHHHHHHHHh----cccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchh-H-----------
Confidence 11111111111112222221 12389999988622 2234556667999988755321000 0
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeeccc
Q 012645 152 PVNQETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPL 231 (459)
Q Consensus 152 p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~ 231 (459)
...... ............+.+. .+..++.+++.+-...+.-. .......++..+...
T Consensus 140 ----------------~~~~~~----~~~~~~~~~~~~~~~~--~~~~~d~vi~~s~~~~~~~~-~~~~~~~~~~~i~~~ 196 (394)
T cd03794 140 ----------------VALGLL----KNGSLLYRLLRKLERL--IYRRADAIVVISPGMREYLV-RRGVPPEKISVIPNG 196 (394)
T ss_pred ----------------HHccCc----cccchHHHHHHHHHHH--HHhcCCEEEEECHHHHHHHH-hcCCCcCceEEcCCC
Confidence 000000 0000000111111111 23456777776655433211 011111234444433
Q ss_pred CCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCcEEEEEeCCC
Q 012645 232 VPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMAD-IAANQVDEIARGLKAS-EKPFLWVVKENE 309 (459)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~-~~~~v~~~~~~~ 309 (459)
+....+.. ........... ...++.+++..|+... ...+.+...+..+... +.++++. +..
T Consensus 197 ~~~~~~~~-------------~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~- 259 (394)
T cd03794 197 VDLELFKP-------------PPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDG- 259 (394)
T ss_pred CCHHHcCC-------------ccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCc-
Confidence 32210000 00000011111 1234477777888653 2233333333433333 4455444 322
Q ss_pred CCCchhhh----hhcCCCceEEeeecHH---HHhcccCccceeccCc---------hhhHHHhhhcCCeeeccccccchh
Q 012645 310 NKLPVEFV----NSVGETGLVVRWCNQF---EVLAHQAVGCFITHCG---------WNSILEGLSLGVAVVAVPQFSDQP 373 (459)
Q Consensus 310 ~~~~~~~~----~~~~~~v~v~~~~p~~---~lL~~~~~~~~I~HGG---------~gs~~eal~~GvP~li~P~~~DQ~ 373 (459)
...+.+. ....+|+.+.+++++. .+++.+++ +|.... -+++.||+++|+|+|+.+....+.
T Consensus 260 -~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~ 336 (394)
T cd03794 260 -PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE 336 (394)
T ss_pred -ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh
Confidence 1112221 1234789999999866 46777777 664322 234799999999999988665433
Q ss_pred hHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 374 TNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 374 ~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
.+... +.|..++ .-+.+++.++|.++++|+
T Consensus 337 ----~~~~~-~~g~~~~-----~~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 337 ----LVEEA-GAGLVVP-----PGDPEALAAAILELLDDP 366 (394)
T ss_pred ----hhccC-CcceEeC-----CCCHHHHHHHHHHHHhCh
Confidence 33343 5565555 457899999999999886
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.27 E-value=1.8e-08 Score=99.30 Aligned_cols=323 Identities=15% Similarity=0.087 Sum_probs=165.4
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEecCccccc----cCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHH
Q 012645 17 AQGHINPLLQFAKRLASKRVKATLATTHYTVKS----IHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAE 92 (459)
Q Consensus 17 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (459)
..|.-..+..|+++|+++||+|++++....... ....++.++.++...... . .. ......+. .....
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~--~~~~~~~~----~~~~~ 90 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEY--L-PK--EELWPYLD----EFADD 90 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccC--C-Ch--hhcchhHH----HHHHH
Confidence 357778999999999999999999986433222 122477777665211110 0 00 00111111 11122
Q ss_pred HHHHhhcCCCCccEEEeCCCc--hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCCCCCC
Q 012645 93 VILKYKDSESPVNCIVYDSLL--TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLPSLAS 170 (459)
Q Consensus 93 l~~~~~~~~~~~Dlvi~D~~~--~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~ 170 (459)
+++.+.....+||+|+++... ..+..+++.+|+|+|...+... . ...
T Consensus 91 ~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~---------------------------~----~~~ 139 (398)
T cd03800 91 LLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLG---------------------------A----VKR 139 (398)
T ss_pred HHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccc---------------------------c----cCC
Confidence 222222211379999987543 3466778899999887544210 0 000
Q ss_pred CCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccccCCccCCCC
Q 012645 171 SDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIAGDSAYGAN 250 (459)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~~~~~g~~ 250 (459)
...... .. .... .........+..++.+++.+....+...........++..+.+.+....+...
T Consensus 140 ~~~~~~---~~-~~~~-~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~---------- 204 (398)
T cd03800 140 RHLGAA---DT-YEPA-RRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPY---------- 204 (398)
T ss_pred cccccc---cc-cchh-hhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecc----------
Confidence 000000 00 0000 00111111235677777777654332111111111224444443322111000
Q ss_pred CCCCChhh-hhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCCCCCch---h---hhh
Q 012645 251 IWEPTGDQ-CMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA-----SEKPFLWVVKENENKLPV---E---FVN 318 (459)
Q Consensus 251 ~~~~~~~~-l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~-----~~~~~v~~~~~~~~~~~~---~---~~~ 318 (459)
..... ...+. . +++..+++..|+.... .....+++++.. .+.+++++.+........ . +.+
T Consensus 205 ---~~~~~~~~~~~-~-~~~~~~i~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~ 277 (398)
T cd03800 205 ---GRAEARRARLL-R-DPDKPRILAVGRLDPR--KGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELAR 277 (398)
T ss_pred ---cchhhHHHhhc-c-CCCCcEEEEEcccccc--cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHH
Confidence 00000 11121 1 1233677788886531 123334444433 245555555433211111 0 111
Q ss_pred --hcCCCceEEeeecHHH---HhcccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEe
Q 012645 319 --SVGETGLVVRWCNQFE---VLAHQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRA 389 (459)
Q Consensus 319 --~~~~~v~v~~~~p~~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~ 389 (459)
...+++.+.+++|+.+ +++.+++ +++. |-..++.||+++|+|+|+.... .....+++. +.|..+
T Consensus 278 ~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~ 350 (398)
T cd03800 278 ELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLV 350 (398)
T ss_pred hcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEe
Confidence 1346888999999765 5877777 7744 2236899999999999876643 355567777 788777
Q ss_pred eecCCCcccHHHHHHHHHHHhcCh
Q 012645 390 KKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 390 ~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+ .-+.+++.++|.++++|+
T Consensus 351 ~-----~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 351 D-----PRDPEALAAALRRLLTDP 369 (398)
T ss_pred C-----CCCHHHHHHHHHHHHhCH
Confidence 6 457999999999999986
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.26 E-value=3.4e-08 Score=95.10 Aligned_cols=316 Identities=16% Similarity=0.134 Sum_probs=165.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc-ccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhch
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK-SIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGS 87 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (459)
||++++....|+......++++|.++||+|++++...... .....+++++.++..... ......+...
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----- 69 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRRG------INPFKDLKAL----- 69 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEeccccccc------cChHhHHHHH-----
Confidence 5788887788899999999999999999999999876554 345568888777632110 1111111111
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCch--hHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCC
Q 012645 88 RTLAEVILKYKDSESPVNCIVYDSLLT--WALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGL 165 (459)
Q Consensus 88 ~~~~~l~~~~~~~~~~~Dlvi~D~~~~--~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~ 165 (459)
..+...+++. +||+|++..... .+..+++..+.|.+..........
T Consensus 70 ~~~~~~~~~~-----~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------------- 117 (359)
T cd03808 70 LRLYRLLRKE-----RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV--------------------------- 117 (359)
T ss_pred HHHHHHHHhc-----CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh---------------------------
Confidence 1223333332 899998875433 234445546666555443220000
Q ss_pred CCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccccCCc
Q 012645 166 PSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIAGDS 245 (459)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~~~ 245 (459)
.... .........+.+. ....++.+++.+-...+...............+.|...+.
T Consensus 118 --~~~~---------~~~~~~~~~~~~~--~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 174 (359)
T cd03808 118 --FTSG---------GLKRRLYLLLERL--ALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDL---------- 174 (359)
T ss_pred --hccc---------hhHHHHHHHHHHH--HHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCCh----------
Confidence 0000 0011111222222 1234577777665543321111111001122222211110
Q ss_pred cCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCcEEEEEeCCC-CCCchh-hhh-h
Q 012645 246 AYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMAD-IAANQVDEIARGLKA--SEKPFLWVVKENE-NKLPVE-FVN-S 319 (459)
Q Consensus 246 ~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~--~~~~~v~~~~~~~-~~~~~~-~~~-~ 319 (459)
......... .+.++.+++..|+... -..+.+-..++.+.. .+.+++++..... ...... ... .
T Consensus 175 ----~~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~ 243 (359)
T cd03808 175 ----DRFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLG 243 (359)
T ss_pred ----hhcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcC
Confidence 000000000 1234478888888653 233333334444433 3344444433322 111100 111 1
Q ss_pred cCCCceEEeeecHH-HHhcccCccceeccCc----hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCC
Q 012645 320 VGETGLVVRWCNQF-EVLAHQAVGCFITHCG----WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRA 394 (459)
Q Consensus 320 ~~~~v~v~~~~p~~-~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 394 (459)
...+|.+.++..+. .+++.+++ +|.-.. .+++.||+++|+|+|+.+.. .+...++.. +.|...+
T Consensus 244 ~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~---- 312 (359)
T cd03808 244 LEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVP---- 312 (359)
T ss_pred CcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEEC----
Confidence 34678887775544 78888887 775433 57899999999999986543 344555556 7776665
Q ss_pred CcccHHHHHHHHHHHhcCh
Q 012645 395 GIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~ 413 (459)
.-+++++.+++.+++.|+
T Consensus 313 -~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 313 -PGDAEALADAIERLIEDP 330 (359)
T ss_pred -CCCHHHHHHHHHHHHhCH
Confidence 457899999999999887
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.26 E-value=2.5e-08 Score=96.78 Aligned_cols=144 Identities=14% Similarity=0.179 Sum_probs=87.1
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCcEEEEEeCCCCCCchhhhh-----hcCCCceEEeeecHH---HHhc
Q 012645 269 KSVIYVSFGSMAD-IAANQVDEIARGLKA--SEKPFLWVVKENENKLPVEFVN-----SVGETGLVVRWCNQF---EVLA 337 (459)
Q Consensus 269 ~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~--~~~~~v~~~~~~~~~~~~~~~~-----~~~~~v~v~~~~p~~---~lL~ 337 (459)
++.+++..|+... ...+.+-.++..+.. .+.++++..... ..+.+.+ ...+++.+.+++|+. .+++
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 277 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP---EREELEELARELGLADRVIFTGFVPREELPDYYK 277 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc---hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHH
Confidence 3466677787653 233333333443433 334445443321 1111211 235789999999876 4677
Q ss_pred ccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 338 HQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 338 ~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
.+++ +|.. |...++.||+++|+|+|+... ...+..++.. +.|..++.. +. ++.+++.++++++
T Consensus 278 ~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~~-----~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 278 AADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPPG-----DE-ALAEALLRLLQDP 344 (374)
T ss_pred HcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCCC-----CH-HHHHHHHHHHhCh
Confidence 7777 6633 344789999999999998653 4456666776 778777643 22 8999999999987
Q ss_pred h-hHHHHHHHHHHHHH
Q 012645 414 R-SQKIKRNVSKWREF 428 (459)
Q Consensus 414 ~-~~~~~~~a~~l~~~ 428 (459)
+ .+.+.+++++..+.
T Consensus 345 ~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 345 ELRRRLSKNAEESAEK 360 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2 12344444444443
No 52
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=1.6e-09 Score=95.86 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=105.7
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhc--CCCceEEeeecHH-HHhcccCcccee
Q 012645 269 KSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSV--GETGLVVRWCNQF-EVLAHQAVGCFI 345 (459)
Q Consensus 269 ~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~v~v~~~~p~~-~lL~~~~~~~~I 345 (459)
+.-|+|++|..- +....-+++..+.+..+.+-++++.. +....+...+. .+|+.+......+ .|++.+++ .|
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~-~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI 232 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS-NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AI 232 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC-CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--he
Confidence 346999999863 33456667888887776666666643 22223333332 3677776666544 79977887 99
Q ss_pred ccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 012645 346 THCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKW 425 (459)
Q Consensus 346 ~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l 425 (459)
+-||. |+.|++..|+|.+++|...-|--.|...+.+ |+-..+.. .++.......+.++.+|. .-+++...-
T Consensus 233 ~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~----~l~~~~~~~~~~~i~~d~---~~rk~l~~~ 303 (318)
T COG3980 233 SAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY----HLKDLAKDYEILQIQKDY---ARRKNLSFG 303 (318)
T ss_pred eccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC----CCchHHHHHHHHHhhhCH---HHhhhhhhc
Confidence 98875 7899999999999999999999999999999 87766654 477778888888899987 655554443
Q ss_pred HH
Q 012645 426 RE 427 (459)
Q Consensus 426 ~~ 427 (459)
.+
T Consensus 304 ~~ 305 (318)
T COG3980 304 SK 305 (318)
T ss_pred cc
Confidence 33
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.25 E-value=3e-08 Score=95.68 Aligned_cols=316 Identities=17% Similarity=0.117 Sum_probs=164.6
Q ss_pred EEEEEcCC---C-ccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCC--CceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 9 HVLVLTYP---A-QGHINPLLQFAKRLASKRVKATLATTHYTVKSIHAT--TVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 9 kil~~~~~---~-~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
||++++.. . .|+...+..+++.|.+.||+|++++........... ....... . .... ......
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~-~~~~~~ 69 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP-----P-----PLLR-VRRLLL 69 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecC-----C-----cccc-cchhHH
Confidence 45555542 2 688999999999999999999999987554332221 0000000 0 0000 000011
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHH--HHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcc
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWAL--DVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPL 160 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~--~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (459)
.......+...++.. ++|+|+......... .++...++|++...+...
T Consensus 70 ~~~~~~~~~~~~~~~-----~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~------------------------- 119 (374)
T cd03801 70 LLLLALRLRRLLRRE-----RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLE------------------------- 119 (374)
T ss_pred HHHHHHHHHHHhhhc-----CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccch-------------------------
Confidence 111112233333332 899999887665433 477888999998765431
Q ss_pred cCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcC-CCeeeecccCCCccccc
Q 012645 161 TLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGL-WPLVMIGPLVPSAYLDQ 239 (459)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~ 239 (459)
+.. .. .. .......... .....+...+.+++.+....+.. ....... .++..+.+.+....
T Consensus 120 --~~~--~~-~~-------~~~~~~~~~~--~~~~~~~~~d~~i~~s~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~--- 181 (374)
T cd03801 120 --FGR--PG-NE-------LGLLLKLARA--LERRALRRADRIIAVSEATREEL-RELGGVPPEKITVIPNGVDTER--- 181 (374)
T ss_pred --hhc--cc-cc-------hhHHHHHHHH--HHHHHHHhCCEEEEecHHHHHHH-HhcCCCCCCcEEEecCcccccc---
Confidence 000 00 00 0000001111 11123345677777775544321 1111110 13444433222210
Q ss_pred cccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEeCCCCCCch
Q 012645 240 QIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS-----EKPFLWVVKENENKLPV 314 (459)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~-----~~~~v~~~~~~~~~~~~ 314 (459)
..+.......-. ....+..+++.+|+... ......+++++..+ +.++++.. .. ....
T Consensus 182 ------------~~~~~~~~~~~~-~~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~G-~~--~~~~ 243 (374)
T cd03801 182 ------------FRPAPRAARRRL-GIPEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIVG-DG--PLRE 243 (374)
T ss_pred ------------cCccchHHHhhc-CCcCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEEe-Cc--HHHH
Confidence 000001111111 11233467777887652 22334444544432 23333333 21 1111
Q ss_pred hhhh-----hcCCCceEEeeecHH---HHhcccCccceec----cCchhhHHHhhhcCCeeeccccccchhhHHHHHHHh
Q 012645 315 EFVN-----SVGETGLVVRWCNQF---EVLAHQAVGCFIT----HCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEV 382 (459)
Q Consensus 315 ~~~~-----~~~~~v~v~~~~p~~---~lL~~~~~~~~I~----HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~ 382 (459)
.+.. ...+++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......++..
T Consensus 244 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~ 317 (374)
T cd03801 244 ELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG 317 (374)
T ss_pred HHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC
Confidence 1111 245789999999754 57877777 773 3556799999999999998765 4455566656
Q ss_pred hhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 383 WEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 383 ~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+.|...+ ..+++++.++|.++++|+
T Consensus 318 -~~g~~~~-----~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 318 -ETGLLVP-----PGDPEALAEAILRLLDDP 342 (374)
T ss_pred -cceEEeC-----CCCHHHHHHHHHHHHcCh
Confidence 7787766 456999999999999987
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.24 E-value=1.3e-08 Score=99.46 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=84.2
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHH----hCCCcEEEEEeCCC-CCCchhhhh-hcCCCceEEeeecHH-HHhcccCcc
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLK----ASEKPFLWVVKENE-NKLPVEFVN-SVGETGLVVRWCNQF-EVLAHQAVG 342 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~----~~~~~~v~~~~~~~-~~~~~~~~~-~~~~~v~v~~~~p~~-~lL~~~~~~ 342 (459)
..+++..|..... ..+..++++++ ..+.+++++..... ..+...... ...+++.+.++.++. .+++.+++
T Consensus 197 ~~~il~~g~l~~~--K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~- 273 (371)
T cd04962 197 EKVLIHISNFRPV--KRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADL- 273 (371)
T ss_pred CeEEEEecccccc--cCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCE-
Confidence 3667777776531 22233333332 23556655543321 111111111 134678888887755 78877777
Q ss_pred ceec----cCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhh-HH
Q 012645 343 CFIT----HCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERS-QK 417 (459)
Q Consensus 343 ~~I~----HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~-~~ 417 (459)
+|. -|...++.||+++|+|+|+... ...+..++.- ..|...+ .-+.+++.+++.++++|++. ++
T Consensus 274 -~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~-----~~~~~~l~~~i~~l~~~~~~~~~ 342 (371)
T cd04962 274 -FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVD-----VGDVEAMAEYALSLLEDDELWQE 342 (371)
T ss_pred -EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcC-----CCCHHHHHHHHHHHHhCHHHHHH
Confidence 662 2334699999999999998543 3455566665 5676554 45789999999999998731 23
Q ss_pred HHHHHHHH
Q 012645 418 IKRNVSKW 425 (459)
Q Consensus 418 ~~~~a~~l 425 (459)
+++++++.
T Consensus 343 ~~~~~~~~ 350 (371)
T cd04962 343 FSRAARNR 350 (371)
T ss_pred HHHHHHHH
Confidence 44444443
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.22 E-value=6.2e-08 Score=96.17 Aligned_cols=160 Identities=12% Similarity=0.108 Sum_probs=90.1
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhC----CCcEEEEEeCCCCCCchhhhh----hcCCCceEEeeecHH---HHhcc
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLKAS----EKPFLWVVKENENKLPVEFVN----SVGETGLVVRWCNQF---EVLAH 338 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~~~----~~~~v~~~~~~~~~~~~~~~~----~~~~~v~v~~~~p~~---~lL~~ 338 (459)
+.+++..|+... ...+..++++++.+ +.+++++ +. +...+.+.+ ...+||.+.+++|+. .+++.
T Consensus 229 ~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~iv-G~--g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~ 303 (412)
T PRK10307 229 KKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVIC-GQ--GGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKM 303 (412)
T ss_pred CEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEEE-CC--ChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHh
Confidence 466667788753 22344455555442 2344443 32 222222221 112578889999865 47878
Q ss_pred cCccceeccCch------hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 339 QAVGCFITHCGW------NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 339 ~~~~~~I~HGG~------gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
+++..+.+..+. +.+.|++++|+|+|+....+.. ....++ +.|..++ .-+.+++.++|.++++|
T Consensus 304 aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~-----~~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 304 ADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVE-----PESVEALVAAIAALARQ 373 (412)
T ss_pred cCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeC-----CCCHHHHHHHHHHHHhC
Confidence 888444444332 2368999999999998653311 111222 4466665 45789999999999988
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012645 413 ER-SQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLL 451 (459)
Q Consensus 413 ~~-~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~ 451 (459)
++ .+.+.+++++..++ .-+....++.+++.+.
T Consensus 374 ~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 374 ALLRPKLGTVAREYAER-------TLDKENVLRQFIADIR 406 (412)
T ss_pred HHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHH
Confidence 62 23455555543332 2333455555544443
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.22 E-value=8.4e-08 Score=94.67 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=59.8
Q ss_pred CCCceEEeeecHHH---HhcccCccceec---cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecC
Q 012645 321 GETGLVVRWCNQFE---VLAHQAVGCFIT---HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNR 393 (459)
Q Consensus 321 ~~~v~v~~~~p~~~---lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 393 (459)
.++|.+.+++|+.+ +++.+++ +|. +.|. .++.||+++|+|+|... .......+..- ..|..++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~--- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVD--- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcC---
Confidence 36888999999764 6767777 553 2333 48999999999999864 33455555555 5676665
Q ss_pred CCcccHHHHHHHHHHHhcCh
Q 012645 394 AGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 394 ~~~~~~~~l~~~i~~ll~~~ 413 (459)
.-+++.+.++|.++++|+
T Consensus 350 --~~d~~~la~~i~~ll~~~ 367 (396)
T cd03818 350 --FFDPDALAAAVIELLDDP 367 (396)
T ss_pred --CCCHHHHHHHHHHHHhCH
Confidence 457999999999999987
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.20 E-value=5.5e-08 Score=96.39 Aligned_cols=341 Identities=14% Similarity=0.064 Sum_probs=170.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc---cccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV---KSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
++.||.+++..-.|+-..+..+|++|+++||+|++++..... +.....|+.++.++..-. ........+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~ 76 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQ-----RLNKLPFLLFAP 76 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCcc-----ccccchHHHHHH
Confidence 467888888888888899999999999999999999875432 113446888888753210 011112222222
Q ss_pred HH---hchHHHHHHHHHhhcCCCCccEEEeCCCc----h-hHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCC
Q 012645 83 KT---VGSRTLAEVILKYKDSESPVNCIVYDSLL----T-WALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVN 154 (459)
Q Consensus 83 ~~---~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~----~-~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~ 154 (459)
.. .....+..++.. .+||+|++.... . .+..+++..++|+|...+...... . .
T Consensus 77 ~~~~~~~~~~~~~l~~~-----~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~--~-~----------- 137 (415)
T cd03816 77 LKVLWQFFSLLWLLYKL-----RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI--L-A----------- 137 (415)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH--H-h-----------
Confidence 11 112222223222 279999975322 1 244456678999987654321000 0 0
Q ss_pred CCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCC
Q 012645 155 QETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPS 234 (459)
Q Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~ 234 (459)
..... ......+...+.+. .++.++.+++.+-..-+. .........++..+......
T Consensus 138 -------------~~~~~-------~~~~~~~~~~~e~~--~~~~ad~ii~vS~~~~~~-l~~~~~~~~ki~vI~Ng~~~ 194 (415)
T cd03816 138 -------------LKLGE-------NHPLVRLAKWYEKL--FGRLADYNLCVTKAMKED-LQQFNNWKIRATVLYDRPPE 194 (415)
T ss_pred -------------cccCC-------CCHHHHHHHHHHHH--HhhcCCEeeecCHHHHHH-HHhhhccCCCeeecCCCCHH
Confidence 00000 00000111111121 124467777666553332 11111111122222111000
Q ss_pred ccccccccCCccCCCCCCCCChhhhhhhh----------------ccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC-
Q 012645 235 AYLDQQIAGDSAYGANIWEPTGDQCMRWL----------------ATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS- 297 (459)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~l----------------~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~- 297 (459)
.+. +.+ .......+. ...+++..++++.|.... ...+..+++|+..+
T Consensus 195 -~f~-p~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~ 258 (415)
T cd03816 195 -QFR-PLP------------LEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYE 258 (415)
T ss_pred -Hce-eCc------------HHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHH
Confidence 000 000 000001111 011234467777787653 12333444444332
Q ss_pred ----------CCcEEEEEeCCCCCCchhhhh---hc-CCCceEE-eeecHH---HHhcccCccceec-c----C-c-hhh
Q 012645 298 ----------EKPFLWVVKENENKLPVEFVN---SV-GETGLVV-RWCNQF---EVLAHQAVGCFIT-H----C-G-WNS 352 (459)
Q Consensus 298 ----------~~~~v~~~~~~~~~~~~~~~~---~~-~~~v~v~-~~~p~~---~lL~~~~~~~~I~-H----G-G-~gs 352 (459)
+.+++++ +.+ ...+.+.+ .. -+++.+. +|+|.. .+|+.+++ +|. + | | -.+
T Consensus 259 ~~~~~~~~~~~i~l~iv-G~G--~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~ 333 (415)
T cd03816 259 KSAATGPKLPKLLCIIT-GKG--PLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMK 333 (415)
T ss_pred HhhcccccCCCEEEEEE-ecC--ccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHH
Confidence 2333333 332 22222221 11 2466655 688755 46777888 662 1 1 2 347
Q ss_pred HHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC---hh-hHHHHHHHHHHH
Q 012645 353 ILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG---ER-SQKIKRNVSKWR 426 (459)
Q Consensus 353 ~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~---~~-~~~~~~~a~~l~ 426 (459)
+.||+++|+|+|+... ......++.. +.|..+. +.++|.++|.++++| ++ .+.+.+++++..
T Consensus 334 ~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~-------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 334 VVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG-------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC-------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9999999999988553 3455666666 7786652 579999999999998 52 345555555554
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.19 E-value=3.9e-08 Score=95.58 Aligned_cols=82 Identities=20% Similarity=0.102 Sum_probs=59.0
Q ss_pred cCCCceEEeeec-HH---HHhcccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeee
Q 012645 320 VGETGLVVRWCN-QF---EVLAHQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 320 ~~~~v~v~~~~p-~~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~ 391 (459)
...++.+.+|++ +. .+++.+++ +|.- |..+++.||+++|+|+|+.... .....+... +.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeC-
Confidence 456788889998 43 56877777 7774 3357999999999999876542 222334444 4565555
Q ss_pred cCCCcccHHHHHHHHHHHhcCh
Q 012645 392 NRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 392 ~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
..+.+.+.+++.++++|+
T Consensus 314 ----~~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 314 ----PGDPEDLAEGIEWLLADP 331 (365)
T ss_pred ----CCCHHHHHHHHHHHHhCH
Confidence 467899999999999987
No 59
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.16 E-value=2.5e-09 Score=104.23 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=84.9
Q ss_pred CCcEEEEEeCCcccC-CHHHHHHHHHHHHhCCC-cEEEEEeCCCCCCchhhhh---hc---CCCceEEeeecHH---HHh
Q 012645 268 EKSVIYVSFGSMADI-AANQVDEIARGLKASEK-PFLWVVKENENKLPVEFVN---SV---GETGLVVRWCNQF---EVL 336 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~~-~~~~~~~i~~a~~~~~~-~~v~~~~~~~~~~~~~~~~---~~---~~~v~v~~~~p~~---~lL 336 (459)
+++.|++++|..... ....+..++++++.+.. +++++..... .....+.+ .. .+++.+.+..++. .++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 275 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-RTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLL 275 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-ChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHH
Confidence 455788888876543 34567778888876543 2444443321 11122221 11 3678777665544 567
Q ss_pred cccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 337 AHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 337 ~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+.+++ ||+..| |.+.||++.|+|+|+++.. |. +..+.+. |++..+. -+.+.|.+++.++++++
T Consensus 276 ~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~------~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 276 KNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG------TDPEAILAAIEKLLSDE 338 (363)
T ss_pred HcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC------CCHHHHHHHHHHHhcCc
Confidence 66777 999999 8888999999999998743 22 3345566 6554332 25899999999999986
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.14 E-value=1.4e-07 Score=90.30 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCCceEEeeecHH-HHhcccCccceeccC----chhhHHHhhhcCCeeeccccccchhhHHHHHHHhhh-ceEEeeecCC
Q 012645 321 GETGLVVRWCNQF-EVLAHQAVGCFITHC----GWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWE-VGVRAKKNRA 394 (459)
Q Consensus 321 ~~~v~v~~~~p~~-~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G-~G~~~~~~~~ 394 (459)
..++.+.++.... .++..+++ +|.-. ..+++.||+++|+|+|+.+....+ ..+... | .|...+
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~---- 302 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVP---- 302 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeC----
Confidence 4567777764433 78877777 77554 247899999999999986544332 234444 4 676665
Q ss_pred CcccHHHHHHHHHHHhcCh
Q 012645 395 GIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~ 413 (459)
..+.+++.++|.++++|+
T Consensus 303 -~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 303 -NGDVEALAEALLRLMEDE 320 (348)
T ss_pred -CCCHHHHHHHHHHHHcCH
Confidence 467899999999999998
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.08 E-value=4.2e-07 Score=89.52 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=62.6
Q ss_pred cCCCceEEeeecHH---HHhcccCccceecc---Cc-hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeec
Q 012645 320 VGETGLVVRWCNQF---EVLAHQAVGCFITH---CG-WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKN 392 (459)
Q Consensus 320 ~~~~v~v~~~~p~~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~ 392 (459)
..++|.+.+++|.. .+++.+++ ++.. -| ..++.||+++|+|+|+.-.. .....+... +.|...+
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~-- 348 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE-- 348 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC--
Confidence 35789999999976 46777787 6632 22 25789999999999987432 233445555 5675543
Q ss_pred CCCcccHHHHHHHHHHHhcChh-hHHHHHHHHH
Q 012645 393 RAGIVTGEELNKCVNEVMDGER-SQKIKRNVSK 424 (459)
Q Consensus 393 ~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 424 (459)
. +++++.++|.+++++++ .+.+.+++++
T Consensus 349 ---~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 349 ---P-TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred ---C-CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 3 78999999999999872 2334444433
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.08 E-value=4.6e-07 Score=87.69 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=81.6
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhh-----hcCCCceEEeeecHH---HHhccc
Q 012645 269 KSVIYVSFGSMAD-IAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVN-----SVGETGLVVRWCNQF---EVLAHQ 339 (459)
Q Consensus 269 ~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~v~v~~~~p~~---~lL~~~ 339 (459)
+..+++..|+... ...+.+-..++.+...+.++.+.+.+.. .....+.+ ...+|+.+.+++++. .++..+
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG-PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC-cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 3467777887654 2223333333333332233443333321 11111111 135789999999875 567677
Q ss_pred Ccccee----ccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 340 AVGCFI----THCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 340 ~~~~~I----~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
++ +| +-|..+++.||+++|+|+|+.+.. .....++.. +.|...+ .-+.+++.+++.++++++
T Consensus 280 d~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~-----~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 280 DV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVP-----PGDPEALAEAILRLLADP 345 (377)
T ss_pred Ce--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEEC-----CCCHHHHHHHHHHHhcCc
Confidence 77 66 335567899999999999876543 345556666 6676655 568999999999999987
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.07 E-value=5.1e-07 Score=89.37 Aligned_cols=335 Identities=15% Similarity=0.104 Sum_probs=164.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEecCcccc---ccC-CCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHH
Q 012645 17 AQGHINPLLQFAKRLASKRVKATLATTHYTVK---SIH-ATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAE 92 (459)
Q Consensus 17 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~---~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (459)
..|--.-...||++|.++||+|+++++..... ..+ ..|+++..++...-.. .........+.......+..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 93 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEG-----LDKEDLPTQLCAFTGGVLRA 93 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCccc-----CCHHHHHHHHHHHHHHHHHH
Confidence 35666788999999999999999999753311 111 2477777664211100 01111111111111122223
Q ss_pred HHHHhhcCCCCccEEEeCCCc--hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCCCCCC
Q 012645 93 VILKYKDSESPVNCIVYDSLL--TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLPSLAS 170 (459)
Q Consensus 93 l~~~~~~~~~~~Dlvi~D~~~--~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~ 170 (459)
++.. ...++|+|-+.... ..+..+++.+++|+|...+...... ... +..
T Consensus 94 ~~~~---~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~---~~~-----------------------~~~ 144 (405)
T TIGR03449 94 EARH---EPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVK---NAA-----------------------LAD 144 (405)
T ss_pred Hhhc---cCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHHHH---HHh-----------------------ccC
Confidence 3332 12379999776533 2355667788999887665331100 000 000
Q ss_pred CCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHh-cCCCeeeecccCCCccccccccCCccCCC
Q 012645 171 SDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAML-GLWPLVMIGPLVPSAYLDQQIAGDSAYGA 249 (459)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~vgp~~~~~~~~~~~~~~~~~g~ 249 (459)
...+ .........+ ..+..++.+++.+....+.. ..... ...++..+..-+....
T Consensus 145 ~~~~--------~~~~~~~~e~--~~~~~~d~vi~~s~~~~~~~-~~~~~~~~~ki~vi~ngvd~~~------------- 200 (405)
T TIGR03449 145 GDTP--------EPEARRIGEQ--QLVDNADRLIANTDEEARDL-VRHYDADPDRIDVVAPGADLER------------- 200 (405)
T ss_pred CCCC--------chHHHHHHHH--HHHHhcCeEEECCHHHHHHH-HHHcCCChhhEEEECCCcCHHH-------------
Confidence 0000 0001111111 12345677777765543321 11111 1112333332222100
Q ss_pred CCCCC-ChhhhhhhhccCCCCcEEEEEeCCcccC-CHHHHHHHHHHH-Hh-CC--CcEEEEEeCCC-C-CCchhhhh---
Q 012645 250 NIWEP-TGDQCMRWLATKPEKSVIYVSFGSMADI-AANQVDEIARGL-KA-SE--KPFLWVVKENE-N-KLPVEFVN--- 318 (459)
Q Consensus 250 ~~~~~-~~~~l~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~i~~a~-~~-~~--~~~v~~~~~~~-~-~~~~~~~~--- 318 (459)
+.+ ..+....-+.. +++..+++..|+.... ..+.+-..+..+ +. .+ ..++++.+... + ...+.+.+
T Consensus 201 --~~~~~~~~~~~~~~~-~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~ 277 (405)
T TIGR03449 201 --FRPGDRATERARLGL-PLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAA 277 (405)
T ss_pred --cCCCcHHHHHHhcCC-CCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHH
Confidence 011 11112222221 1234677788887642 223332222222 22 12 33333332111 1 11122221
Q ss_pred --hcCCCceEEeeecHH---HHhcccCccceec---cCc-hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEe
Q 012645 319 --SVGETGLVVRWCNQF---EVLAHQAVGCFIT---HCG-WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRA 389 (459)
Q Consensus 319 --~~~~~v~v~~~~p~~---~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~ 389 (459)
...++|.+.+++|+. ++++.+++ +|. +.| ..++.||+++|+|+|+.... .....+++. +.|..+
T Consensus 278 ~~~l~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~ 350 (405)
T TIGR03449 278 ELGIADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLV 350 (405)
T ss_pred HcCCCceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEEC
Confidence 134689999999865 57878887 663 233 35899999999999986543 344455565 667666
Q ss_pred eecCCCcccHHHHHHHHHHHhcChh-hHHHHHHHHH
Q 012645 390 KKNRAGIVTGEELNKCVNEVMDGER-SQKIKRNVSK 424 (459)
Q Consensus 390 ~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 424 (459)
+ .-+.+++.++|.+++++++ .+++++++++
T Consensus 351 ~-----~~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 351 D-----GHDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred C-----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 5 4578999999999999872 1234444443
No 64
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.07 E-value=1.7e-08 Score=98.39 Aligned_cols=135 Identities=13% Similarity=0.195 Sum_probs=82.4
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEeCCCCCCchhhhhh--cCCCceEEeeecHH---HHhccc
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLKAS-----EKPFLWVVKENENKLPVEFVNS--VGETGLVVRWCNQF---EVLAHQ 339 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~~~-----~~~~v~~~~~~~~~~~~~~~~~--~~~~v~v~~~~p~~---~lL~~~ 339 (459)
+.|+++.+-..... ..+..+++++..+ +.++++....+. .....+.+. ..+++++.+.+++. .+++.+
T Consensus 198 ~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~a 275 (365)
T TIGR00236 198 RYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNP-VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANS 275 (365)
T ss_pred CEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCCh-HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhC
Confidence 46666554332211 3466677776653 445555433221 111111111 23578888766654 567667
Q ss_pred CccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHH
Q 012645 340 AVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIK 419 (459)
Q Consensus 340 ~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 419 (459)
++ +|+-.|.. +.||+++|+|+|.++...+++. +.+. |.+..+ ..+++.|.+++.++++|+ +.+
T Consensus 276 d~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv------~~d~~~i~~ai~~ll~~~---~~~ 338 (365)
T TIGR00236 276 HL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLV------GTDKENITKAAKRLLTDP---DEY 338 (365)
T ss_pred CE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEe------CCCHHHHHHHHHHHHhCh---HHH
Confidence 76 99977654 7999999999999876555542 3346 766544 247899999999999987 555
Q ss_pred HHHH
Q 012645 420 RNVS 423 (459)
Q Consensus 420 ~~a~ 423 (459)
++..
T Consensus 339 ~~~~ 342 (365)
T TIGR00236 339 KKMS 342 (365)
T ss_pred HHhh
Confidence 5443
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.06 E-value=1.7e-07 Score=90.88 Aligned_cols=132 Identities=13% Similarity=0.133 Sum_probs=83.7
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEEeCCC-CCCchhh-hhhcCCCceEEeeecHH---HHhcccCccc
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLKASE-KPFLWVVKENE-NKLPVEF-VNSVGETGLVVRWCNQF---EVLAHQAVGC 343 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~-~~~v~~~~~~~-~~~~~~~-~~~~~~~v~v~~~~p~~---~lL~~~~~~~ 343 (459)
..+++..|+... ......++++++... .+++++..+.. ..+..-. ......||.+.+++|+. .+++.+++-+
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i 268 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFV 268 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEE
Confidence 367778888653 234556777777766 45454433211 1111111 11235789999999975 5776777733
Q ss_pred eec---cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHH-hhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 344 FIT---HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEE-VWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 344 ~I~---HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~-~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+-+ +.|. .++.||+++|+|+|+........ .+.. . +.|...+ .-+.+++.++|.++++|+
T Consensus 269 ~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~-----~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 269 FPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVP-----PGDPAALAEAIRRLLEDP 333 (357)
T ss_pred eCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeC-----CCCHHHHHHHHHHHHHCH
Confidence 323 2444 47999999999999876544433 3333 5 6776665 468999999999999987
No 66
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.02 E-value=2.5e-06 Score=90.78 Aligned_cols=379 Identities=11% Similarity=0.120 Sum_probs=192.9
Q ss_pred CCCcEEEEEcCCC---------------ccCHHHHHHHHHHHHhCC--CeEEEEecCcccc--------c---c------
Q 012645 5 RERVHVLVLTYPA---------------QGHINPLLQFAKRLASKR--VKATLATTHYTVK--------S---I------ 50 (459)
Q Consensus 5 ~~~~kil~~~~~~---------------~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~--------~---~------ 50 (459)
.++|.|++++..+ .|+..=.++||++|+++| |+|.++|-..... . +
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 4678888887432 235555789999999998 8999998643211 1 1
Q ss_pred -------CCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHH----HHHhhc-CCCCccEEEeCCCc--hhH
Q 012645 51 -------HATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEV----ILKYKD-SESPVNCIVYDSLL--TWA 116 (459)
Q Consensus 51 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~-~~~~~Dlvi~D~~~--~~~ 116 (459)
..+|+..+.+|.+...... ....++.++..|.+.+...+.++ .+++.. ....||+|-+.... ..+
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l-~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYI-PKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCc-CHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 1247777777754332111 12344566666666555444432 222211 11259999988544 347
Q ss_pred HHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhc
Q 012645 117 LDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGS 196 (459)
Q Consensus 117 ~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (459)
..+++.+|||+|...++....-. .... .. +- .....+... ......+.-....
T Consensus 326 ~~L~~~lgVP~V~T~HSLgr~K~--~~ll----~~------------g~--~~~~~~~~~-------y~~~~Ri~~Ee~~ 378 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLGRDKL--EQLL----KQ------------GR--MSKEEINST-------YKIMRRIEAEELS 378 (1050)
T ss_pred HHHHHhhCCCEEEECccchhhhh--hhhc----cc------------cc--ccccccccc-------cchHHHHHHHHHH
Confidence 78888999999988765310000 0000 00 00 000000000 0011122222224
Q ss_pred ccCCceEEEcchhHhhHHHHHH--Hh--------------------cCCCeeeecccCCCccccccccC-C-ccCC----
Q 012645 197 LNKNDWVLCNSFEELEKELLRA--ML--------------------GLWPLVMIGPLVPSAYLDQQIAG-D-SAYG---- 248 (459)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~--~~--------------------~~~~~~~vgp~~~~~~~~~~~~~-~-~~~g---- 248 (459)
+..++.++..|..+.+..+..+ +. ..+++..|.|=+....|...... + ...|
T Consensus 379 l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~ 458 (1050)
T TIGR02468 379 LDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEH 458 (1050)
T ss_pred HHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccc
Confidence 5678888988888776432221 00 01133333332222111111000 0 0000
Q ss_pred -CCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCC-----CcEEEEEeCCC--CCCc-------
Q 012645 249 -ANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASE-----KPFLWVVKENE--NKLP------- 313 (459)
Q Consensus 249 -~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~-----~~~v~~~~~~~--~~~~------- 313 (459)
.....+...++..|+.. +++ ++++..|..... ..+..+++|+..+. .++.++++..+ ..+.
T Consensus 459 ~~~~~~~~~~~l~r~~~~-pdk-pvIL~VGRL~p~--KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l 534 (1050)
T TIGR02468 459 PAKPDPPIWSEIMRFFTN-PRK-PMILALARPDPK--KNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVL 534 (1050)
T ss_pred cccccchhhHHHHhhccc-CCC-cEEEEEcCCccc--cCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHH
Confidence 01011123356677754 333 566677876532 22344555554431 24444554422 1110
Q ss_pred hhhh---h--hcCCCceEEeeecHHH---HhcccC--ccceecc---Cch-hhHHHhhhcCCeeeccccccchhhHHHHH
Q 012645 314 VEFV---N--SVGETGLVVRWCNQFE---VLAHQA--VGCFITH---CGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFV 379 (459)
Q Consensus 314 ~~~~---~--~~~~~v~v~~~~p~~~---lL~~~~--~~~~I~H---GG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv 379 (459)
..+. + .+.++|.+.+++++.+ ++..++ .++||.- =|+ .++.||+++|+|+|+....+ ....+
T Consensus 535 ~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII 610 (1050)
T TIGR02468 535 TSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH 610 (1050)
T ss_pred HHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh
Confidence 0111 1 1357788888888764 454442 1237764 344 58999999999999886432 22233
Q ss_pred HHhhhceEEeeecCCCcccHHHHHHHHHHHhcChh-hHHHHHHHHHH
Q 012645 380 EEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGER-SQKIKRNVSKW 425 (459)
Q Consensus 380 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l 425 (459)
+.- .-|..++ .-+++.|.++|.++++|++ .+.+.+++++.
T Consensus 611 ~~g-~nGlLVd-----P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 611 RVL-DNGLLVD-----PHDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred ccC-CcEEEEC-----CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 333 4576665 4678999999999999873 23455554443
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.02 E-value=1.2e-06 Score=86.43 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=74.2
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCcEEEEEeCCC-CCCchhhhh-hcCCCceEEeeecHH---HHhcccC
Q 012645 269 KSVIYVSFGSMAD-IAANQVDEIARGLKA--SEKPFLWVVKENE-NKLPVEFVN-SVGETGLVVRWCNQF---EVLAHQA 340 (459)
Q Consensus 269 ~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~--~~~~~v~~~~~~~-~~~~~~~~~-~~~~~v~v~~~~p~~---~lL~~~~ 340 (459)
+..+++..|.... -..+.+...+..+.+ .+..++++..+.. +.+.+-... ...++|.+.+++|+. .+++.++
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad 271 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGH 271 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 3477778887653 222333333333332 3444444432211 111111111 134678889999864 5777777
Q ss_pred ccceec---cCchh-hHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 341 VGCFIT---HCGWN-SILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 341 ~~~~I~---HGG~g-s~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+ +|. +-|.| ++.||+++|+|+|+....+ ....+ .. |-+ .+. ..+.+++.+++.+++++.
T Consensus 272 ~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~-~~~-----~~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 272 I--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMI-LLA-----EPDVESIVRKLEEAISIL 334 (398)
T ss_pred E--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cce-eec-----CCCHHHHHHHHHHHHhCh
Confidence 7 654 33444 9999999999999877542 22223 23 423 222 237899999999999864
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.99 E-value=1.7e-06 Score=83.87 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=56.1
Q ss_pred cCCCceEEeeecHH---HHhcccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeec
Q 012645 320 VGETGLVVRWCNQF---EVLAHQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKN 392 (459)
Q Consensus 320 ~~~~v~v~~~~p~~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~ 392 (459)
..+++.+.+++++. .++..+++ +|.- |-..++.||+++|+|+|+.+..+ ... +... +.|...+
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~-~~~~-~~~~~~~-- 329 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQE-LIEY-GCGWVVD-- 329 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHH-Hhhc-CceEEeC--
Confidence 35788899999955 46777777 5543 22468999999999999876432 222 2223 5565544
Q ss_pred CCCcccHHHHHHHHHHHhcCh
Q 012645 393 RAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 393 ~~~~~~~~~l~~~i~~ll~~~ 413 (459)
.+.+++.++|.++++++
T Consensus 330 ----~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 330 ----DDVDALAAALRRALELP 346 (375)
T ss_pred ----CChHHHHHHHHHHHhCH
Confidence 34499999999999986
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.99 E-value=5.5e-07 Score=89.73 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=60.0
Q ss_pred CceEEeeecHH-HHhcccCccceecc-----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCc
Q 012645 323 TGLVVRWCNQF-EVLAHQAVGCFITH-----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGI 396 (459)
Q Consensus 323 ~v~v~~~~p~~-~lL~~~~~~~~I~H-----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 396 (459)
++.+.+..... .+++.+++ ++.. ||..++.||+++|+|+|.-|...++......+.+. |.+...
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~------- 372 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV------- 372 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------
Confidence 35555544443 67877776 4432 34446999999999999999888888888877777 765432
Q ss_pred ccHHHHHHHHHHHhcCh
Q 012645 397 VTGEELNKCVNEVMDGE 413 (459)
Q Consensus 397 ~~~~~l~~~i~~ll~~~ 413 (459)
-++++|.+++.++++|+
T Consensus 373 ~d~~~La~~l~~ll~~~ 389 (425)
T PRK05749 373 EDAEDLAKAVTYLLTDP 389 (425)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 35789999999999987
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.98 E-value=2e-07 Score=89.35 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=78.9
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEeCCC-CCCchhhhh--hcCCCceEEeeecHH-HHhcc
Q 012645 268 EKSVIYVSFGSMADIAANQVDEIARGLKAS-----EKPFLWVVKENE-NKLPVEFVN--SVGETGLVVRWCNQF-EVLAH 338 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~-----~~~~v~~~~~~~-~~~~~~~~~--~~~~~v~v~~~~p~~-~lL~~ 338 (459)
.++.+++..|+... ......++++++.+ +.+++++..... ..+. ...+ ...+++.+.++.+.. ++++.
T Consensus 187 ~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 187 PDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVILGDGPLREELE-ALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred CCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHH-HHHHhcCCCccEEEecccCCHHHHHHh
Confidence 34477788888653 22233444444442 344444432211 1111 1111 134678888887765 78888
Q ss_pred cCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHH---HHHHHHHhc
Q 012645 339 QAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEEL---NKCVNEVMD 411 (459)
Q Consensus 339 ~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l---~~~i~~ll~ 411 (459)
+++ +|.- |..+++.||+++|+|+|+.... .....++.. +.|...+ .-+.+.+ .+.+.++++
T Consensus 264 ~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~-----~~~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 264 ADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVP-----VGDEAALAAAALALLDLLL 331 (353)
T ss_pred CCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEEC-----CCCHHHHHHHHHHHHhccC
Confidence 887 6632 3456899999999999885443 556677777 8887776 4566666 566666666
Q ss_pred Ch
Q 012645 412 GE 413 (459)
Q Consensus 412 ~~ 413 (459)
++
T Consensus 332 ~~ 333 (353)
T cd03811 332 DP 333 (353)
T ss_pred Ch
Confidence 65
No 71
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.96 E-value=1.2e-06 Score=82.74 Aligned_cols=299 Identities=15% Similarity=0.159 Sum_probs=160.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc--ccccCCCCceEEEcCCCCCCCCCCCCCCHH-HHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT--VKSIHATTVGVEPISDGFDEGGFKQAPSVK-AYLESFKT 84 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 84 (459)
|||.+-- ...-|+.=+-.+.++|.++||+|.+.+-+.. .+.+...|++++.+...- .+.. +......+
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g--------~~~~~Kl~~~~~R 71 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG--------DSLYGKLLESIER 71 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC--------CCHHHHHHHHHHH
Confidence 6666554 3444999999999999999999999987643 345666899999986321 1222 22222221
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCC
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPG 164 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~ 164 (459)
. ..+-.++.+. +||++|+- .+..+..+|.-+|+|+|.+.-...... ......|... .+.
T Consensus 72 ~--~~l~~~~~~~-----~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~-------~~~Lt~Pla~---~i~--- 130 (335)
T PF04007_consen 72 Q--YKLLKLIKKF-----KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA-------QNRLTLPLAD---VII--- 130 (335)
T ss_pred H--HHHHHHHHhh-----CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc-------cceeehhcCC---eeE---
Confidence 1 2233344443 89999975 557788899999999999876541110 0000011000 000
Q ss_pred CCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEE-EcchhHhhHHHHHHHhcCCCeeeecccCCCccccccccC
Q 012645 165 LPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVL-CNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIAG 243 (459)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~ 243 (459)
.|..+. ...+.+... + +.+. .+.+.| +.++-|.
T Consensus 131 --------~P~~~~--------~~~~~~~G~---~-~~i~~y~G~~E--------------~ayl~~F------------ 164 (335)
T PF04007_consen 131 --------TPEAIP--------KEFLKRFGA---K-NQIRTYNGYKE--------------LAYLHPF------------ 164 (335)
T ss_pred --------CCcccC--------HHHHHhcCC---c-CCEEEECCeee--------------EEeecCC------------
Confidence 011000 000011100 0 1111 122221 2222221
Q ss_pred CccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCccc----CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhh
Q 012645 244 DSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMAD----IAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNS 319 (459)
Q Consensus 244 ~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~----~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~ 319 (459)
+|+++ ..+-+.. ++++.|++=+-+... .....+..+++.+++.+.. |+.++..+ ..++-+. .
T Consensus 165 ---------~Pd~~-vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~-~~~~~~~-~ 230 (335)
T PF04007_consen 165 ---------KPDPE-VLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYE-DQRELFE-K 230 (335)
T ss_pred ---------CCChh-HHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCc-chhhHHh-c
Confidence 12122 2223322 244577776655321 2345567788889888776 44444322 1111111 1
Q ss_pred cCCCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCccc
Q 012645 320 VGETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVT 398 (459)
Q Consensus 320 ~~~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~ 398 (459)
. ++.+. .-+....||.++++ +|+-|| ++..||...|+|.|.+ +.++-...-+.+.+. |+ ... ..+
T Consensus 231 ~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~-----~~~ 296 (335)
T PF04007_consen 231 Y--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYH-----STD 296 (335)
T ss_pred c--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEe-----cCC
Confidence 1 13333 44555589988998 999887 8999999999999975 222322333456777 54 333 466
Q ss_pred HHHHHHHHHHHh
Q 012645 399 GEELNKCVNEVM 410 (459)
Q Consensus 399 ~~~l~~~i~~ll 410 (459)
++++.+.+.+.+
T Consensus 297 ~~ei~~~v~~~~ 308 (335)
T PF04007_consen 297 PDEIVEYVRKNL 308 (335)
T ss_pred HHHHHHHHHHhh
Confidence 777777555544
No 72
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.96 E-value=1.2e-06 Score=84.93 Aligned_cols=318 Identities=14% Similarity=0.074 Sum_probs=161.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEecCcc-ccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 012645 16 PAQGHINPLLQFAKRLASKRVKATLATTHYT-VKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVI 94 (459)
Q Consensus 16 ~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (459)
...|--.-+..||++|+++||+|++++.... ...++..|++++.++.. . ......+..+ ..+..++
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~-----~~l~~~~ 74 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPFI--S------KNPLRILLNV-----ARLRRLI 74 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEcccc--c------cchhhhHHHH-----HHHHHHH
Confidence 3456666788999999999999999986432 23344457777666421 0 1111111111 1223333
Q ss_pred HHhhcCCCCccEEEeCCCc--hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCCCCCCCC
Q 012645 95 LKYKDSESPVNCIVYDSLL--TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLPSLASSD 172 (459)
Q Consensus 95 ~~~~~~~~~~Dlvi~D~~~--~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~ 172 (459)
++. +||+|++.... ..+..+++.+++|++...+...... .
T Consensus 75 ~~~-----~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-----------------------------~---- 116 (355)
T cd03819 75 REE-----KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVN-----------------------------F---- 116 (355)
T ss_pred HHc-----CCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhH-----------------------------H----
Confidence 332 89999987543 2345566788999987654321000 0
Q ss_pred CCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHh-cCCCeeeecccCCCccccccccCCccCCCCC
Q 012645 173 LPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAML-GLWPLVMIGPLVPSAYLDQQIAGDSAYGANI 251 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~vgp~~~~~~~~~~~~~~~~~g~~~ 251 (459)
.... .+..++.+++.+-...+. ...... ...++..++..++...+..
T Consensus 117 ----------------~~~~---~~~~~~~vi~~s~~~~~~-~~~~~~~~~~k~~~i~ngi~~~~~~~------------ 164 (355)
T cd03819 117 ----------------RYNA---IMARGDRVIAVSNFIADH-IRENYGVDPDRIRVIPRGVDLDRFDP------------ 164 (355)
T ss_pred ----------------HHHH---HHHhcCEEEEeCHHHHHH-HHHhcCCChhhEEEecCCccccccCc------------
Confidence 0001 123456666655433222 111111 0113444443222211100
Q ss_pred CCCChhhh---hhhhccCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCC-CCCchhhh---h--h
Q 012645 252 WEPTGDQC---MRWLATKPEKSVIYVSFGSMAD-IAANQVDEIARGLKAS--EKPFLWVVKENE-NKLPVEFV---N--S 319 (459)
Q Consensus 252 ~~~~~~~l---~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~--~~~~v~~~~~~~-~~~~~~~~---~--~ 319 (459)
......+. .+-+.. +++..+++..|+... -..+.+-..+..+... +.+++++..... ......+. . .
T Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~ 243 (355)
T cd03819 165 GAVPPERILALAREWPL-PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLG 243 (355)
T ss_pred cccchHHHHHHHHHcCC-CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcC
Confidence 00001111 111111 233467777787653 2344454555555543 344444433221 11211111 1 2
Q ss_pred cCCCceEEeeecHH-HHhcccCccceec--cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCC
Q 012645 320 VGETGLVVRWCNQF-EVLAHQAVGCFIT--HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAG 395 (459)
Q Consensus 320 ~~~~v~v~~~~p~~-~lL~~~~~~~~I~--HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 395 (459)
..++|++.++.+.. .+++.+++-.+-+ +-|+ +++.||+++|+|+|+.-. ......+... +.|..++
T Consensus 244 ~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~----- 313 (355)
T cd03819 244 LQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVP----- 313 (355)
T ss_pred CcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeC-----
Confidence 34678888886544 7888888833323 2333 599999999999987653 2344455555 5787765
Q ss_pred cccHHHHHHHHHHHhc-Chh-hHHHHHHHHHHHH
Q 012645 396 IVTGEELNKCVNEVMD-GER-SQKIKRNVSKWRE 427 (459)
Q Consensus 396 ~~~~~~l~~~i~~ll~-~~~-~~~~~~~a~~l~~ 427 (459)
.-+.+.+.++|..++. +++ .+++++++++..+
T Consensus 314 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 314 PGDAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred CCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4688999999976654 442 2334444444443
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=1.5e-06 Score=84.14 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=79.3
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCC-CCCchhhhh-hcCCCceEEeeecHH---HHhcccC
Q 012645 269 KSVIYVSFGSMAD-IAANQVDEIARGLKAS--EKPFLWVVKENE-NKLPVEFVN-SVGETGLVVRWCNQF---EVLAHQA 340 (459)
Q Consensus 269 ~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~--~~~~v~~~~~~~-~~~~~~~~~-~~~~~v~v~~~~p~~---~lL~~~~ 340 (459)
++.+++.+|+... -..+.+...+..+... +..++++..... ..+.....+ ...++|.+.+++|+. .+++.++
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad 257 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAAD 257 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCC
Confidence 3466677777643 2233333333444333 334444432211 111111111 135789999999755 5676777
Q ss_pred ccceec----------cCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHh
Q 012645 341 VGCFIT----------HCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 341 ~~~~I~----------HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 410 (459)
+ +|. -|..+++.||+++|+|+|+.+... ....++.. ..|..+. .-+.+++.++|.+++
T Consensus 258 i--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~~~-----~~~~~~l~~~i~~~~ 325 (355)
T cd03799 258 L--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLLVP-----PGDPEALADAIERLL 325 (355)
T ss_pred E--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEEeC-----CCCHHHHHHHHHHHH
Confidence 7 665 234578999999999999866432 22344444 4776665 458999999999999
Q ss_pred cCh
Q 012645 411 DGE 413 (459)
Q Consensus 411 ~~~ 413 (459)
+++
T Consensus 326 ~~~ 328 (355)
T cd03799 326 DDP 328 (355)
T ss_pred hCH
Confidence 987
No 74
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.94 E-value=3.1e-07 Score=88.18 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=78.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhh--cCCCceEEeeecHH---HHhcccCccce
Q 012645 271 VIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVNS--VGETGLVVRWCNQF---EVLAHQAVGCF 344 (459)
Q Consensus 271 ~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~--~~~~v~v~~~~p~~---~lL~~~~~~~~ 344 (459)
.+++..|.... ......++++++..+.+++++..... ..+.....+. ..+++.+.+++++. .+++.+++-++
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ 249 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLF 249 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEe
Confidence 44555677642 23345577788888877776654422 1111111112 25789999999876 46777777333
Q ss_pred ec--cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 345 IT--HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 345 I~--HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
-+ +-|. .++.||+++|+|+|+.... .....++.. ..|...+ . .+++.+++.+++...
T Consensus 250 ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~-----~--~~~l~~~l~~l~~~~ 309 (335)
T cd03802 250 PILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD-----S--VEELAAAVARADRLD 309 (335)
T ss_pred CCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC-----C--HHHHHHHHHHHhccH
Confidence 23 2344 5899999999999977653 222333333 3555443 3 899999999887653
No 75
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.93 E-value=1.7e-07 Score=89.17 Aligned_cols=156 Identities=18% Similarity=0.109 Sum_probs=94.3
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhCCCc-EEEEEeCCCCCCchhhhhhcC--CCceEEeeecHHHHhcccCccceec
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLKASEKP-FLWVVKENENKLPVEFVNSVG--ETGLVVRWCNQFEVLAHQAVGCFIT 346 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~-~v~~~~~~~~~~~~~~~~~~~--~~v~v~~~~p~~~lL~~~~~~~~I~ 346 (459)
++|.+--||....-...+-.++++...+..+ .++.+..... . +.+.+... ..+.+.+ .-.++++.+|+ +|+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~-~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~ 241 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK-G-KDLKEIYGDISEFEISY--DTHKALLEAEF--AFI 241 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc-H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHh
Confidence 5899999998653223444344555443221 2333322111 1 22222121 1222332 23478988888 999
Q ss_pred cCchhhHHHhhhcCCeeecccc--ccchhhHHHHHH---HhhhceEEe-------------eecCCCcccHHHHHHHHHH
Q 012645 347 HCGWNSILEGLSLGVAVVAVPQ--FSDQPTNAKFVE---EVWEVGVRA-------------KKNRAGIVTGEELNKCVNE 408 (459)
Q Consensus 347 HGG~gs~~eal~~GvP~li~P~--~~DQ~~na~rv~---~~~G~G~~~-------------~~~~~~~~~~~~l~~~i~~ 408 (459)
-.|..|. |++.+|+|+|+ +. ..=|..||+++. .. |+...+ ..+ ++|++.|.+.+.+
T Consensus 242 ~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~---~~t~~~la~~i~~ 315 (347)
T PRK14089 242 CSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQE---FVTVENLLKAYKE 315 (347)
T ss_pred cCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcc---cCCHHHHHHHHHH
Confidence 9999999 99999999988 54 346889999999 66 766555 334 7999999999987
Q ss_pred HhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 012645 409 VMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEF 446 (459)
Q Consensus 409 ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~ 446 (459)
. .. +.+++...++++.+. ++.+..+++.+
T Consensus 316 ~-~~---~~~~~~~~~l~~~l~-----~~a~~~~A~~i 344 (347)
T PRK14089 316 M-DR---EKFFKKSKELREYLK-----HGSAKNVAKIL 344 (347)
T ss_pred H-HH---HHHHHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 2 11 256666666666552 24445554443
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.88 E-value=2.7e-06 Score=82.87 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=63.0
Q ss_pred cCCCceEEeeecHH---HHhcccCccceecc----------CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhce
Q 012645 320 VGETGLVVRWCNQF---EVLAHQAVGCFITH----------CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVG 386 (459)
Q Consensus 320 ~~~~v~v~~~~p~~---~lL~~~~~~~~I~H----------GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G 386 (459)
..+++.+.+++|+. .+++.+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+... +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 35788888999865 45877777 6632 2357999999999999987653 356666677 778
Q ss_pred EEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 387 VRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
..++ ..+.+++.++|.++++|+
T Consensus 316 ~~~~-----~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 316 LLVP-----EGDVAALAAALGRLLADP 337 (367)
T ss_pred EEEC-----CCCHHHHHHHHHHHHcCH
Confidence 7666 457899999999999987
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.86 E-value=1.1e-06 Score=85.49 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=79.8
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCC-CCCchhhhh-hcCCCceEEeeecH--H---HHhcccC
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLKAS--EKPFLWVVKENE-NKLPVEFVN-SVGETGLVVRWCNQ--F---EVLAHQA 340 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~~~--~~~~v~~~~~~~-~~~~~~~~~-~~~~~v~v~~~~p~--~---~lL~~~~ 340 (459)
+.+++..|.........+..+++++... +.+++++..+.+ +.+.....+ ..+++|.+.+++++ . +.++.++
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d 259 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVS 259 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCc
Confidence 3566777776432233455666666654 334444433221 111111111 23578999998753 3 3344456
Q ss_pred ccceecc----CchhhHHHhhhcCCeeeccc-cccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChh
Q 012645 341 VGCFITH----CGWNSILEGLSLGVAVVAVP-QFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGER 414 (459)
Q Consensus 341 ~~~~I~H----GG~gs~~eal~~GvP~li~P-~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 414 (459)
+ +|.. |-..++.||+++|+|+|+.- ..+ ....++.- ..|..++ .-+.+++.++|.++++|++
T Consensus 260 ~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~-----~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 260 A--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYT-----PGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred E--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEEC-----CCCHHHHHHHHHHHHhCcc
Confidence 5 6643 33579999999999999865 322 22344444 5676665 5689999999999999983
No 78
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.86 E-value=4.2e-06 Score=81.14 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=59.2
Q ss_pred cCCCceEEe-eecHH---HHhcccCccceec----c--CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEe
Q 012645 320 VGETGLVVR-WCNQF---EVLAHQAVGCFIT----H--CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRA 389 (459)
Q Consensus 320 ~~~~v~v~~-~~p~~---~lL~~~~~~~~I~----H--GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~ 389 (459)
..++|.+.+ |+|+. .+++.+++ +|. - |..+++.||+++|+|+|+.+... ...+... +.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 457888875 48864 67877777 663 2 34568999999999999877543 3345556 677666
Q ss_pred eecCCCcccHHHHHHHHHHHhcCh
Q 012645 390 KKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 390 ~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
. .-+.+++.+++.++++|+
T Consensus 317 ~-----~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 317 P-----PGDPAALAEAIRRLLADP 335 (366)
T ss_pred c-----CCCHHHHHHHHHHHHcCh
Confidence 6 456899999999999985
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.82 E-value=6.4e-06 Score=79.83 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCcEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCcEEEEEeCCC-CCCchhhh-hhcCCCceEEeeecHH-HHhcccCc
Q 012645 268 EKSVIYVSFGSMAD-IAANQVDEIARGLKAS--EKPFLWVVKENE-NKLPVEFV-NSVGETGLVVRWCNQF-EVLAHQAV 341 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~--~~~~v~~~~~~~-~~~~~~~~-~~~~~~v~v~~~~p~~-~lL~~~~~ 341 (459)
+++.+++..|+... -..+.+-..+..+... +.+++++..... ..+..... ....+++.+.++..+. ++++.+++
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 269 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDV 269 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCE
Confidence 34477778888653 2334444444444332 344444432211 11111111 1235778888875443 78888887
Q ss_pred cceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 342 GCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 342 ~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+|+- |-..++.||+++|+|+|+....+- ...++ . +.|.... .-+++++.++|.++++|+
T Consensus 270 --~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~-~-~~~~~~~-----~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 270 --FLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLT-D-LVKFLSL-----DESPEIWAEEILKLKSED 332 (358)
T ss_pred --EEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhc-c-CccEEeC-----CCCHHHHHHHHHHHHhCc
Confidence 6653 445799999999999988665432 22222 2 3343333 356899999999999998
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.82 E-value=1.7e-05 Score=79.26 Aligned_cols=84 Identities=11% Similarity=0.166 Sum_probs=58.6
Q ss_pred cCCCceEEeeecHHH---Hhccc--CccceeccC---c-hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEee
Q 012645 320 VGETGLVVRWCNQFE---VLAHQ--AVGCFITHC---G-WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAK 390 (459)
Q Consensus 320 ~~~~v~v~~~~p~~~---lL~~~--~~~~~I~HG---G-~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~ 390 (459)
..++|.+.+++++.+ +++.+ ++++||... | ..+++||+++|+|+|+.... .....++.. ..|..++
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~ 389 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVD 389 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeC
Confidence 357788888887665 46544 123377643 3 35999999999999887643 344444444 5676665
Q ss_pred ecCCCcccHHHHHHHHHHHhcCh
Q 012645 391 KNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 391 ~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
.-+++.+.++|.++++|+
T Consensus 390 -----~~d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 390 -----VLDLEAIASALEDALSDS 407 (439)
T ss_pred -----CCCHHHHHHHHHHHHhCH
Confidence 457899999999999987
No 81
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.79 E-value=2e-06 Score=83.52 Aligned_cols=314 Identities=12% Similarity=0.077 Sum_probs=162.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEecCcccc--------ccCCCCceEEEcCCCCCCCCC-CCCCCHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK-RVKATLATTHYTVK--------SIHATTVGVEPISDGFDEGGF-KQAPSVKA 77 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 77 (459)
|||++++ |++-.+.-+.++.++|++. +.++.++.+..+.+ .+...|+... + .++-... ....++..
T Consensus 1 ~ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 76 (365)
T TIGR03568 1 KKICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDID--E-KIEILLDSDSNAGMAK 76 (365)
T ss_pred CeEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCC--C-ccccccCCCCCCCHHH
Confidence 5677665 8888888899999999874 78988888776542 1222344321 1 1111000 11122222
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCccEEEeC--CCc-hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCC
Q 012645 78 YLESFKTVGSRTLAEVILKYKDSESPVNCIVYD--SLL-TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVN 154 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D--~~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~ 154 (459)
..... ...+.+++++. +||+||+- ... .++..+|..+|||++.+.-.-
T Consensus 77 ~~~~~----~~~~~~~~~~~-----~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~-------------------- 127 (365)
T TIGR03568 77 SMGLT----IIGFSDAFERL-----KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGE-------------------- 127 (365)
T ss_pred HHHHH----HHHHHHHHHHh-----CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCc--------------------
Confidence 22221 23445555654 89999854 333 357889999999999765422
Q ss_pred CCCCcccCCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCC
Q 012645 155 QETVPLTLPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPS 234 (459)
Q Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~ 234 (459)
.... .+ .+..++.... -++..++++-...+. ....-.+-.+++.+|...-+
T Consensus 128 -------------rs~~-~~------------eE~~r~~i~~--la~l~f~~t~~~~~~-L~~eg~~~~~i~~tG~~~iD 178 (365)
T TIGR03568 128 -------------VTEG-AI------------DESIRHAITK--LSHLHFVATEEYRQR-VIQMGEDPDRVFNVGSPGLD 178 (365)
T ss_pred -------------cCCC-Cc------------hHHHHHHHHH--HHhhccCCCHHHHHH-HHHcCCCCCcEEEECCcHHH
Confidence 0000 00 0111111110 011122222221111 00000001236666643322
Q ss_pred ccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcc--c-CCHHHHHHHHHHHHhCCCcEEEEEeCCC--
Q 012645 235 AYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMA--D-IAANQVDEIARGLKASEKPFLWVVKENE-- 309 (459)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~--~-~~~~~~~~i~~a~~~~~~~~v~~~~~~~-- 309 (459)
....- .....+++.+.+.-.++++.|+|++=... . ...+.+..+++++...+.+++++.....
T Consensus 179 ~l~~~------------~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~ 246 (365)
T TIGR03568 179 NILSL------------DLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG 246 (365)
T ss_pred HHHhh------------hccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC
Confidence 11000 00012223333222223458778875543 2 4457789999999888766666654331
Q ss_pred C-CCchhhhhhc--CCCceEEeeec---HHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhh
Q 012645 310 N-KLPVEFVNSV--GETGLVVRWCN---QFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVW 383 (459)
Q Consensus 310 ~-~~~~~~~~~~--~~~v~v~~~~p---~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~ 383 (459)
. ...+.+.+.. .+++.+.+-++ ...+++++++ +|+-++.+. .||.+.|||.|.+- + |-+-.
T Consensus 247 ~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~------R~e~~- 313 (365)
T TIGR03568 247 SRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T------RQKGR- 313 (365)
T ss_pred chHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C------Cchhh-
Confidence 1 1111222111 36788886554 4478878888 998886666 99999999999774 2 22222
Q ss_pred hceEEeeecCCCcccHHHHHHHHHHHhc
Q 012645 384 EVGVRAKKNRAGIVTGEELNKCVNEVMD 411 (459)
Q Consensus 384 G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 411 (459)
-.|..+..- ..+++.|.+++.++++
T Consensus 314 ~~g~nvl~v---g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 314 LRADSVIDV---DPDKEEIVKAIEKLLD 338 (365)
T ss_pred hhcCeEEEe---CCCHHHHHHHHHHHhC
Confidence 224332212 4678999999999554
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.77 E-value=5.6e-06 Score=80.26 Aligned_cols=125 Identities=12% Similarity=0.173 Sum_probs=76.0
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCCCCCchhhhh-----hcCCCceEEeeecHH-HHhc
Q 012645 269 KSVIYVSFGSMADIAANQVDEIARGLKA-----SEKPFLWVVKENENKLPVEFVN-----SVGETGLVVRWCNQF-EVLA 337 (459)
Q Consensus 269 ~~~V~vs~Gs~~~~~~~~~~~i~~a~~~-----~~~~~v~~~~~~~~~~~~~~~~-----~~~~~v~v~~~~p~~-~lL~ 337 (459)
+..+++..|+... ......++++++. .+.+++++..+. ..+.+.+ ...+++.+.++..+. .+++
T Consensus 187 ~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 261 (360)
T cd04951 187 DTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGP---LRATLERLIKALGLSNRVKLLGLRDDIAAYYN 261 (360)
T ss_pred CCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCC---cHHHHHHHHHhcCCCCcEEEecccccHHHHHH
Confidence 3477788887643 2223334444433 245666554322 1122211 134678888877554 7888
Q ss_pred ccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 338 HQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 338 ~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.+++ +|.- |..+++.||+++|+|+|+. |...+...++.. |. .+. .-+.+++.+++.+++++
T Consensus 262 ~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~--~~~-----~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 262 AADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GL--IVP-----ISDPEALANKIDEILKM 326 (360)
T ss_pred hhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ce--EeC-----CCCHHHHHHHHHHHHhC
Confidence 8887 5543 2257899999999999874 444555555555 43 343 45788999999999943
No 83
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.77 E-value=2.6e-05 Score=75.15 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=75.6
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCCCCCchhhh---hhcCCCceEEeeecHH-HHhccc
Q 012645 269 KSVIYVSFGSMADIAANQVDEIARGLKA-----SEKPFLWVVKENENKLPVEFV---NSVGETGLVVRWCNQF-EVLAHQ 339 (459)
Q Consensus 269 ~~~V~vs~Gs~~~~~~~~~~~i~~a~~~-----~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~v~~~~p~~-~lL~~~ 339 (459)
+..+++..|+.... .....++++++. .+.+++++............. ....+++.+.+..... .+++.+
T Consensus 192 ~~~~i~~~G~~~~~--K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 269 (365)
T cd03807 192 DTFLIGIVARLHPQ--KDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNAL 269 (365)
T ss_pred CCeEEEEecccchh--cCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhC
Confidence 34677788886542 123334444332 244555543322110001111 1234567766655443 788888
Q ss_pred CccceeccCc----hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 340 AVGCFITHCG----WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 340 ~~~~~I~HGG----~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
++ +|..+. .+++.||+++|+|+|+... ..+...+... |..++ .-+.+++.+++.++++++
T Consensus 270 di--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~~---g~~~~-----~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 270 DV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGDT---GFLVP-----PGDPEALAEAIEALLADP 333 (365)
T ss_pred CE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhcC---CEEeC-----CCCHHHHHHHHHHHHhCh
Confidence 87 776544 3799999999999988543 3444444444 44444 356899999999999986
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.75 E-value=3e-05 Score=76.18 Aligned_cols=132 Identities=15% Similarity=0.158 Sum_probs=78.8
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCC-CCCchhhhhh---c---CCCceEE-eeecHH---HHh
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLKAS--EKPFLWVVKENE-NKLPVEFVNS---V---GETGLVV-RWCNQF---EVL 336 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~~~--~~~~v~~~~~~~-~~~~~~~~~~---~---~~~v~v~-~~~p~~---~lL 336 (459)
.++++..|.... ......++++++.+ +..++++.+... ..+.+.+.+. . .+++... +++++. .++
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 278 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELL 278 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHH
Confidence 356677787653 23355566666654 455555544322 1111112111 1 1335544 567754 568
Q ss_pred cccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCccc----HHHHHHHHHH
Q 012645 337 AHQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVT----GEELNKCVNE 408 (459)
Q Consensus 337 ~~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~----~~~l~~~i~~ 408 (459)
+.+++ +|.= |...++.||+++|+|+|+... ......++.. +.|..++.. ..+ .+.+.++|.+
T Consensus 279 ~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~---~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 279 SNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPD---NSDADGFQAELAKAINI 348 (388)
T ss_pred HhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCC---CCcccchHHHHHHHHHH
Confidence 77887 6642 233577999999999998653 3455566666 678777643 221 2899999999
Q ss_pred HhcCh
Q 012645 409 VMDGE 413 (459)
Q Consensus 409 ll~~~ 413 (459)
+++|+
T Consensus 349 l~~~~ 353 (388)
T TIGR02149 349 LLADP 353 (388)
T ss_pred HHhCH
Confidence 99987
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.68 E-value=2.5e-05 Score=76.39 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCCceEEeeecHH-HHhcccCcccee--cc--CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCC
Q 012645 321 GETGLVVRWCNQF-EVLAHQAVGCFI--TH--CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAG 395 (459)
Q Consensus 321 ~~~v~v~~~~p~~-~lL~~~~~~~~I--~H--GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 395 (459)
..++.+.++..+. .+++.+++ +| ++ |-..++.||+++|+|+|+.... .+...++.- ..|..++
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~----- 321 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVP----- 321 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeC-----
Confidence 3456666655443 78888888 66 33 4457999999999999986643 344455555 5676665
Q ss_pred cccHHHHHHHHHHHhcCh
Q 012645 396 IVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 396 ~~~~~~l~~~i~~ll~~~ 413 (459)
.-+.+++.++|.++++++
T Consensus 322 ~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 322 PGDAVALARALQPYVSDP 339 (374)
T ss_pred CCCHHHHHHHHHHHHhCH
Confidence 457899999999999986
No 86
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.68 E-value=8.7e-06 Score=78.84 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=77.9
Q ss_pred EEEEEeCCcccC-CHHHHHHHHHHHHhCC--CcEEEEEeCCCCCCchhh----hhhcCCCceEEeeecHH---HHhcccC
Q 012645 271 VIYVSFGSMADI-AANQVDEIARGLKASE--KPFLWVVKENENKLPVEF----VNSVGETGLVVRWCNQF---EVLAHQA 340 (459)
Q Consensus 271 ~V~vs~Gs~~~~-~~~~~~~i~~a~~~~~--~~~v~~~~~~~~~~~~~~----~~~~~~~v~v~~~~p~~---~lL~~~~ 340 (459)
.+++..|+.... ..+.+-..+..+...+ .++++...... ...... .....+++.+.+++|+. .+++.++
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 274 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGW-LNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR 274 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCcc-ccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh
Confidence 566677876532 2333433344443332 45554433221 111111 11246788888999876 5677777
Q ss_pred ccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhH
Q 012645 341 VGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQ 416 (459)
Q Consensus 341 ~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 416 (459)
+ +|.- |..+++.||+++|+|+|+..... ....+.+. |..+. ..+.+++.++|.++++|+
T Consensus 275 ~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~---~~~~~-----~~~~~~~~~~i~~l~~~~--- 337 (365)
T cd03809 275 A--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGDA---ALYFD-----PLDPEALAAAIERLLEDP--- 337 (365)
T ss_pred h--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecCc---eeeeC-----CCCHHHHHHHHHHHhcCH---
Confidence 7 5533 33468999999999999865421 11112223 44444 457899999999999987
Q ss_pred HHHHHHH
Q 012645 417 KIKRNVS 423 (459)
Q Consensus 417 ~~~~~a~ 423 (459)
+.+.+..
T Consensus 338 ~~~~~~~ 344 (365)
T cd03809 338 ALREELR 344 (365)
T ss_pred HHHHHHH
Confidence 5444433
No 87
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.67 E-value=2.3e-05 Score=78.60 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=97.3
Q ss_pred CCeeeec-ccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHH--hC--
Q 012645 223 WPLVMIG-PLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLK--AS-- 297 (459)
Q Consensus 223 ~~~~~vg-p~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~--~~-- 297 (459)
-++.||| |+..... ..+..++..+-+.-.+++++|-+--||....=...+-.++++.+ ..
T Consensus 381 v~v~yVGHPL~d~i~---------------~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~ 445 (608)
T PRK01021 381 LRTVYLGHPLVETIS---------------SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLAS 445 (608)
T ss_pred CCeEEECCcHHhhcc---------------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3599999 6655421 01123334444443446679999999976533334444566655 32
Q ss_pred CCcEEEEEeCCCCCCchhhhhhcC-C---CceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccc-cccch
Q 012645 298 EKPFLWVVKENENKLPVEFVNSVG-E---TGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVP-QFSDQ 372 (459)
Q Consensus 298 ~~~~v~~~~~~~~~~~~~~~~~~~-~---~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P-~~~DQ 372 (459)
+.++++.... ....+.+.+... . .+.++.--...++++.+++ .+.-.| ..++|+...|+|||++= ...=-
T Consensus 446 ~l~fvvp~a~--~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lt 520 (608)
T PRK01021 446 THQLLVSSAN--PKYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFD 520 (608)
T ss_pred CeEEEEecCc--hhhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHH
Confidence 3455554332 111122222111 1 1222210012488877777 777666 45689999999998853 22223
Q ss_pred hhHHHHHHH-----------hh--hceEEee--ecCCCcccHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHH
Q 012645 373 PTNAKFVEE-----------VW--EVGVRAK--KNRAGIVTGEELNKCVNEVMDGER-SQKIKRNVSKWREFA 429 (459)
Q Consensus 373 ~~na~rv~~-----------~~--G~G~~~~--~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~ 429 (459)
..-|+++.+ .. .+-..+- .+ +.|++.|.+++ ++|.|++ .+++++..+++++.+
T Consensus 521 y~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~---~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 521 TFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKK---DFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcc---cCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 344555555 10 1111222 22 68999999997 8888762 234555555555544
No 88
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.62 E-value=0.00028 Score=73.78 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCCceEEeee-cH---HHHhcc-cC-ccceec---cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEee
Q 012645 321 GETGLVVRWC-NQ---FEVLAH-QA-VGCFIT---HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAK 390 (459)
Q Consensus 321 ~~~v~v~~~~-p~---~~lL~~-~~-~~~~I~---HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~ 390 (459)
.++|.+.++. +. .+++.+ ++ .++||. .=|. -++.||+++|+|+|+.-.. ..+..|+.- .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeC
Confidence 4778877764 32 244432 32 123664 2333 4899999999999886543 445555555 5677776
Q ss_pred ecCCCcccHHHHHHHHHHHh
Q 012645 391 KNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 391 ~~~~~~~~~~~l~~~i~~ll 410 (459)
..+++.+.++|.+++
T Consensus 693 -----p~D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 -----PYHGEEAAEKIVDFF 707 (784)
T ss_pred -----CCCHHHHHHHHHHHH
Confidence 457888999988876
No 89
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.60 E-value=9.7e-05 Score=71.64 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=70.3
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCC--CcEEEEEeCCC-CCCchhhh--hhcCCCceEEeeecHHH---HhcccCccc
Q 012645 272 IYVSFGSMADIAANQVDEIARGLKASE--KPFLWVVKENE-NKLPVEFV--NSVGETGLVVRWCNQFE---VLAHQAVGC 343 (459)
Q Consensus 272 V~vs~Gs~~~~~~~~~~~i~~a~~~~~--~~~v~~~~~~~-~~~~~~~~--~~~~~~v~v~~~~p~~~---lL~~~~~~~ 343 (459)
.++..|+... ...+..+++++.... .+++++..... ..+...+. ....++|.+.+++|+.+ ++..+++
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~-- 270 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL-- 270 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--
Confidence 3456777653 223445666666644 45554443211 11111121 12457899999998874 5655666
Q ss_pred eeccCc----h-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 344 FITHCG----W-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 344 ~I~HGG----~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
++-+.- . +++.||+++|+|+|+...... ...++.. |...... +. +.+++.++++++
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~~---g~~~~~~-----~~--l~~~i~~l~~~~ 331 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGDK---AIYFKVG-----DD--LASLLEELEADP 331 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecCC---eeEecCc-----hH--HHHHHHHHHhCH
Confidence 555433 3 479999999999998754321 1111222 2223221 12 999999999986
No 90
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.60 E-value=2.3e-05 Score=75.21 Aligned_cols=192 Identities=18% Similarity=0.177 Sum_probs=104.5
Q ss_pred CCeeeec-ccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-----
Q 012645 223 WPLVMIG-PLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA----- 296 (459)
Q Consensus 223 ~~~~~vg-p~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~----- 296 (459)
-++.||| |++..... ........+.+ -.+++++|.+--||....=...+-.++++.+.
T Consensus 153 ~~~~~VGHPl~d~~~~---------------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~ 216 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKP---------------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQR 216 (373)
T ss_pred CCeEEECCcchhhhcc---------------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999 66655211 11122333333 23466699999999764222223333444332
Q ss_pred CCCcEEEEEeCCCCCCch---hhhhhcCCCceEEeee-cHHHHhcccCccceeccCchhhHHHhhhcCCeeeccc-cccc
Q 012645 297 SEKPFLWVVKENENKLPV---EFVNSVGETGLVVRWC-NQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVP-QFSD 371 (459)
Q Consensus 297 ~~~~~v~~~~~~~~~~~~---~~~~~~~~~v~v~~~~-p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P-~~~D 371 (459)
.+.++++...... ..+ ........++.+.-.. .-.+++..+++ .+.-.| ..++|+...|+|||++= ...=
T Consensus 217 p~l~fvvp~a~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~l 291 (373)
T PF02684_consen 217 PDLQFVVPVAPEV--HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPL 291 (373)
T ss_pred CCeEEEEecCCHH--HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHH
Confidence 3455565543321 111 1111122333333222 33467877776 555544 56789999999998763 3333
Q ss_pred hhhHHHHHHHhhhc------------eEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCc
Q 012645 372 QPTNAKFVEEVWEV------------GVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSS 439 (459)
Q Consensus 372 Q~~na~rv~~~~G~------------G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s 439 (459)
-..-|+++.+. .- -..+-. +..|++.|.+++.+++.|. +.++..+...+.+.+....|.++
T Consensus 292 t~~iak~lvk~-~~isL~Niia~~~v~PEliQ---~~~~~~~i~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 292 TYFIAKRLVKV-KYISLPNIIAGREVVPELIQ---EDATPENIAAELLELLENP---EKRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHHHHHHhhcC-CEeechhhhcCCCcchhhhc---ccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhccCC
Confidence 44455555443 21 111122 3799999999999999998 55655566666666554555555
Q ss_pred HHH
Q 012645 440 DKN 442 (459)
Q Consensus 440 ~~~ 442 (459)
..+
T Consensus 365 ~~~ 367 (373)
T PF02684_consen 365 RAA 367 (373)
T ss_pred HHH
Confidence 443
No 91
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.56 E-value=0.00011 Score=72.68 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=60.2
Q ss_pred cCCCceEEeeecHH---HHhcccCccceecc---------Cch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhce
Q 012645 320 VGETGLVVRWCNQF---EVLAHQAVGCFITH---------CGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVG 386 (459)
Q Consensus 320 ~~~~v~v~~~~p~~---~lL~~~~~~~~I~H---------GG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G 386 (459)
..++|.+.+|+|+. ++++.+++ +|.- -|. .++.||+++|+|+|+.... .....++.- ..|
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G 349 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSG 349 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-Cce
Confidence 35789999999976 46777777 6642 345 5789999999999987543 233344444 567
Q ss_pred EEeeecCCCcccHHHHHHHHHHHhc-Ch
Q 012645 387 VRAKKNRAGIVTGEELNKCVNEVMD-GE 413 (459)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~i~~ll~-~~ 413 (459)
..++ .-+++.+.++|.++++ |+
T Consensus 350 ~lv~-----~~d~~~la~ai~~l~~~d~ 372 (406)
T PRK15427 350 WLVP-----ENDAQALAQRLAAFSQLDT 372 (406)
T ss_pred EEeC-----CCCHHHHHHHHHHHHhCCH
Confidence 6665 4679999999999999 86
No 92
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.54 E-value=2.5e-05 Score=77.14 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=61.8
Q ss_pred CCCceEEeeecHH-HHhcccCcccee--cc--Cchh-hHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCC
Q 012645 321 GETGLVVRWCNQF-EVLAHQAVGCFI--TH--CGWN-SILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRA 394 (459)
Q Consensus 321 ~~~v~v~~~~p~~-~lL~~~~~~~~I--~H--GG~g-s~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 394 (459)
.++|.+.+++++. .+++.+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. .+.. |.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC----
Confidence 4678889999865 78888888 65 32 4553 6999999999999988543321 1234 5565443
Q ss_pred CcccHHHHHHHHHHHhcChh-hHHHHHHHHH
Q 012645 395 GIVTGEELNKCVNEVMDGER-SQKIKRNVSK 424 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 424 (459)
-+++++.++|.++++|++ .+.+.+++++
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~~~~ar~ 375 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREELGQAARR 375 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 368999999999999873 1234444443
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=0.00045 Score=72.08 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=65.1
Q ss_pred cCCCceEEeeecHH-HHhcccCccceec---cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCC
Q 012645 320 VGETGLVVRWCNQF-EVLAHQAVGCFIT---HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRA 394 (459)
Q Consensus 320 ~~~~v~v~~~~p~~-~lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 394 (459)
..++|++.+|.++. .+++.+++ +|. +.|+ +++.||+++|+|+|+.... .....++.- ..|..++..
T Consensus 572 L~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~-- 642 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPAD-- 642 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCC--
Confidence 35788888988765 78888888 664 5564 6899999999999987642 344445555 568777765
Q ss_pred CcccHHHHHHHHHHHhcChhh-HHHHHHHHHHH
Q 012645 395 GIVTGEELNKCVNEVMDGERS-QKIKRNVSKWR 426 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~~~-~~~~~~a~~l~ 426 (459)
..+++++.+++.+++.+... ..+++++++..
T Consensus 643 -d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 -TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred -CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 56666777777666543210 16666655443
No 94
>PLN02275 transferase, transferring glycosyl groups
Probab=98.52 E-value=0.00011 Score=71.83 Aligned_cols=121 Identities=7% Similarity=-0.078 Sum_probs=68.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEecCccc---cccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRV-KATLATTHYTV---KSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh-~V~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
=|+.+++.|-.|.-..+..++..|+++|| +|++++.+... +.....|++.+.++. ... . .........+..+.
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~-~~~-~-~~~~~~~~~~~~~~ 81 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ-PRL-L-QRLPRVLYALALLL 81 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC-ccc-c-cccccchHHHHHHH
Confidence 46666777899999999999999999886 79999875432 223335788888864 111 1 11111222111221
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCC-Cch----hHHHHHHHcCCceEEEcc
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDS-LLT----WALDVARQFGIYGAAMMT 132 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~-~~~----~~~~~a~~lgiP~v~~~~ 132 (459)
.. ...+..++..+.....+||+|++.. ... .+..+++..++|++...+
T Consensus 82 ~~-~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 134 (371)
T PLN02275 82 KV-AIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWH 134 (371)
T ss_pred HH-HHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcC
Confidence 11 1111222221111123899998753 221 244566778999988654
No 95
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.50 E-value=1.7e-06 Score=83.00 Aligned_cols=305 Identities=14% Similarity=0.105 Sum_probs=144.8
Q ss_pred HHHHhC-CCeEEEEecCcccc--ccCC--CCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCC
Q 012645 29 KRLASK-RVKATLATTHYTVK--SIHA--TTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESP 103 (459)
Q Consensus 29 ~~L~~~-Gh~V~~~~~~~~~~--~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (459)
|+|.++ +.++.++.+...-+ .-.. .|+....++-.+.. .. .+..... ......+.+++++. +
T Consensus 1 ~~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i~~~~~~l~~---~~-~~~~~~~----~~~~~~~~~~~~~~-----~ 67 (346)
T PF02350_consen 1 KALQKDPGFELILIVTGQHLDPEMGDTFFEGFGIPKPDYLLDS---DS-QSMAKST----GLAIIELADVLERE-----K 67 (346)
T ss_dssp -HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT--SEEEE--S---TT-S-HHHHH----HHHHHHHHHHHHHH-----T
T ss_pred ChhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCCCCCCccccc---cc-chHHHHH----HHHHHHHHHHHHhc-----C
Confidence 567776 88888888876622 1111 14443111111111 11 2222222 22234556666665 8
Q ss_pred ccEEE--eCCCc-hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccCCCCCCCCCCCCCccccCC
Q 012645 104 VNCIV--YDSLL-TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTLPGLPSLASSDLPSFLAQP 180 (459)
Q Consensus 104 ~Dlvi--~D~~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 180 (459)
||+|| .|.+. .+++.+|..++||++-+.... ...+.. .
T Consensus 68 Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl----------------------------------Rs~d~~-----~ 108 (346)
T PF02350_consen 68 PDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL----------------------------------RSGDRT-----E 108 (346)
T ss_dssp -SEEEEETTSHHHHHHHHHHHHTT-EEEEES---------------------------------------S-TT-----S
T ss_pred CCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC----------------------------------CccccC-----C
Confidence 99997 45554 457889999999988875432 000000 0
Q ss_pred CCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccccCCccCCCCCCCCChhhh-
Q 012645 181 ASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQIAGDSAYGANIWEPTGDQC- 259 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~~~~~g~~~~~~~~~~l- 259 (459)
...++..+.... .-++..++.+-...+.....-. +-.+++.+|...-+....... ...+..
T Consensus 109 ---g~~de~~R~~i~--~la~lhf~~t~~~~~~L~~~G~-~~~rI~~vG~~~~D~l~~~~~------------~~~~~~~ 170 (346)
T PF02350_consen 109 ---GMPDEINRHAID--KLAHLHFAPTEEARERLLQEGE-PPERIFVVGNPGIDALLQNKE------------EIEEKYK 170 (346)
T ss_dssp ---STTHHHHHHHHH--HH-SEEEESSHHHHHHHHHTT---GGGEEE---HHHHHHHHHHH------------TTCC-HH
T ss_pred ---CCchhhhhhhhh--hhhhhhccCCHHHHHHHHhcCC-CCCeEEEEChHHHHHHHHhHH------------HHhhhhh
Confidence 011222233222 1245666666654443211111 113588888543331111000 001111
Q ss_pred -hhhhccCCCCcEEEEEeCCcccCC-H---HHHHHHHHHHHhC-CCcEEEEEeCCC---CCCchhhhhhcCCCceEEeee
Q 012645 260 -MRWLATKPEKSVIYVSFGSMADIA-A---NQVDEIARGLKAS-EKPFLWVVKENE---NKLPVEFVNSVGETGLVVRWC 330 (459)
Q Consensus 260 -~~~l~~~~~~~~V~vs~Gs~~~~~-~---~~~~~i~~a~~~~-~~~~v~~~~~~~---~~~~~~~~~~~~~~v~v~~~~ 330 (459)
..++.. .+++.+++++=...+.. + ..+..+++++.+. ++.+||.....+ ..+.+.+ ... +|+++++.+
T Consensus 171 ~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l-~~~-~~v~~~~~l 247 (346)
T PF02350_consen 171 NSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKL-KKY-DNVRLIEPL 247 (346)
T ss_dssp HHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHH-TT--TTEEEE---
T ss_pred hHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHh-ccc-CCEEEECCC
Confidence 122222 56679999985555544 3 3344455555554 677888876432 1121111 223 588888666
Q ss_pred c---HHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHH
Q 012645 331 N---QFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVN 407 (459)
Q Consensus 331 p---~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~ 407 (459)
+ +..+|+++++ +|+-.| |-.-||.+.|||.|.+ .++..|-+-+ ..|..+- - ..+++.|.++++
T Consensus 248 ~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i------R~~geRqe~r-~~~~nvl-v---~~~~~~I~~ai~ 313 (346)
T PF02350_consen 248 GYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI------RDSGERQEGR-ERGSNVL-V---GTDPEAIIQAIE 313 (346)
T ss_dssp -HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC------SSS-S-HHHH-HTTSEEE-E---TSSHHHHHHHHH
T ss_pred CHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe------cCCCCCHHHH-hhcceEE-e---CCCHHHHHHHHH
Confidence 5 4578888888 999999 4444999999999999 2222333333 3333333 2 689999999999
Q ss_pred HHhcChhhHHHHHHHH
Q 012645 408 EVMDGERSQKIKRNVS 423 (459)
Q Consensus 408 ~ll~~~~~~~~~~~a~ 423 (459)
+++++. .+.++..
T Consensus 314 ~~l~~~---~~~~~~~ 326 (346)
T PF02350_consen 314 KALSDK---DFYRKLK 326 (346)
T ss_dssp HHHH-H---HHHHHHH
T ss_pred HHHhCh---HHHHhhc
Confidence 999875 4444443
No 96
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.49 E-value=0.00014 Score=73.35 Aligned_cols=134 Identities=11% Similarity=0.109 Sum_probs=73.3
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhh---hhcCCCceEE-eeecHH--HHhcccCc
Q 012645 269 KSVIYVSFGSMAD-IAANQVDEIARGLKASEKPFLWVVKENENKLPVEFV---NSVGETGLVV-RWCNQF--EVLAHQAV 341 (459)
Q Consensus 269 ~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~v~-~~~p~~--~lL~~~~~ 341 (459)
+.++++..|.... -..+.+...+..+...+.+++++..+. ....+.+. +..+.++.+. ++-... .+++.+++
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~-~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv 359 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGD-PELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADM 359 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCc-HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCE
Confidence 3467777788653 222333222222323366666664321 11111221 2345565543 553222 56777777
Q ss_pred cceec---cCchh-hHHHhhhcCCeeecccccc--chhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhc
Q 012645 342 GCFIT---HCGWN-SILEGLSLGVAVVAVPQFS--DQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMD 411 (459)
Q Consensus 342 ~~~I~---HGG~g-s~~eal~~GvP~li~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 411 (459)
+|. +-|.| +.+||+++|+|.|+....+ |.-.+...-... +.|..++ .-+++.|.++|.++++
T Consensus 360 --~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~-----~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 360 --FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD-----DFNAEDLLRALRRALE 427 (466)
T ss_pred --EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC-----CCCHHHHHHHHHHHHH
Confidence 774 34554 7889999999998875432 322111111334 5576665 4678999999999886
No 97
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=2.3e-05 Score=73.86 Aligned_cols=334 Identities=13% Similarity=0.126 Sum_probs=178.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEecCccc--cccCCCCceEEEcC-CCCCCCCCCCCCCHHHHHH
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKR-VKATLATTHYTV--KSIHATTVGVEPIS-DGFDEGGFKQAPSVKAYLE 80 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~G-h~V~~~~~~~~~--~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (459)
|+++||+++ +|++=.+.-+.++.+++.+.+ .+..++.+..+. +.... .++...++ ..+.-......+++.....
T Consensus 1 m~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~-~le~~~i~~pdy~L~i~~~~~tl~~~t~ 78 (383)
T COG0381 1 MKMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQ-VLELFGIRKPDYDLNIMKPGQTLGEITG 78 (383)
T ss_pred CCceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHH-HHHHhCCCCCCcchhccccCCCHHHHHH
Confidence 445666655 599999999999999999987 787777777766 33222 11111121 1112111122233333322
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCccEEEe--CCCc-hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCC
Q 012645 81 SFKTVGSRTLAEVILKYKDSESPVNCIVY--DSLL-TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQET 157 (459)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~--D~~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 157 (459)
.+-..+.+++++. +||+|++ |... ++++.+|.+++||+.-+-...
T Consensus 79 ----~~i~~~~~vl~~~-----kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl----------------------- 126 (383)
T COG0381 79 ----NIIEGLSKVLEEE-----KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL----------------------- 126 (383)
T ss_pred ----HHHHHHHHHHHhh-----CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc-----------------------
Confidence 2234455666665 8999984 4444 445888889999999875432
Q ss_pred CcccCCCCCCCCCC-CCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCcc
Q 012645 158 VPLTLPGLPSLASS-DLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAY 236 (459)
Q Consensus 158 ~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~ 236 (459)
.... +.|+-.+ +.+... -++..+.++-...+....+-.+. .+++.+|-...+..
T Consensus 127 ----------Rt~~~~~PEE~N---------R~l~~~-----~S~~hfapte~ar~nLl~EG~~~-~~IfvtGnt~iDal 181 (383)
T COG0381 127 ----------RTGDLYFPEEIN---------RRLTSH-----LSDLHFAPTEIARKNLLREGVPE-KRIFVTGNTVIDAL 181 (383)
T ss_pred ----------ccCCCCCcHHHH---------HHHHHH-----hhhhhcCChHHHHHHHHHcCCCc-cceEEeCChHHHHH
Confidence 0000 0111111 111111 12222333332222111101110 13666775433321
Q ss_pred ccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh----CCCcEEEEEeCCC-CC
Q 012645 237 LDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA----SEKPFLWVVKENE-NK 311 (459)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~----~~~~~v~~~~~~~-~~ 311 (459)
..-... ...........+.. +.+..+.+|+=-..+.. +.+..|.+++.+ . ..+.++.+... ..
T Consensus 182 ~~~~~~---------~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~~~ 249 (383)
T COG0381 182 LNTRDR---------VLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPRPR 249 (383)
T ss_pred HHHHhh---------hccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCChh
Confidence 100000 00011111111222 23458888876655544 555555555443 3 24444444332 11
Q ss_pred CchhhhhhcC--CCceEE---eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhce
Q 012645 312 LPVEFVNSVG--ETGLVV---RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVG 386 (459)
Q Consensus 312 ~~~~~~~~~~--~~v~v~---~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G 386 (459)
+.+-....+. .|+++. ++.++..+++++.+ ++|-.| |-.-||-..|+|.+++=..-|||. .. -.|
T Consensus 250 v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v---~ag 319 (383)
T COG0381 250 VRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GV---EAG 319 (383)
T ss_pred hhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc----ce---ecC
Confidence 1111112233 357776 67788899988888 999876 456799999999999999999987 12 233
Q ss_pred EEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012645 387 VRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWR 426 (459)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 426 (459)
...-- ..+.+.|.+++.++++++ ++.+|.+...
T Consensus 320 t~~lv----g~~~~~i~~~~~~ll~~~---~~~~~m~~~~ 352 (383)
T COG0381 320 TNILV----GTDEENILDAATELLEDE---EFYERMSNAK 352 (383)
T ss_pred ceEEe----CccHHHHHHHHHHHhhCh---HHHHHHhccc
Confidence 33332 467899999999999997 6666544433
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.46 E-value=8.1e-06 Score=79.13 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=85.5
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHH---HHhcccCccceeccC
Q 012645 272 IYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQF---EVLAHQAVGCFITHC 348 (459)
Q Consensus 272 V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~---~lL~~~~~~~~I~HG 348 (459)
.++..|+... ......++++++..+.+++++..+. ..+.+.+...+||.+.+++|+. .+++.+++-++-+.-
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~---~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e 271 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP---ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEE 271 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh---hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcC
Confidence 4556677653 2346667888888777766655432 2223333467899999999985 578788873322344
Q ss_pred ch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 349 GW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 349 G~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
|. .++.||+++|+|+|.....+ ....++.. +.|..++ .-+++.+.++|.++++|+
T Consensus 272 ~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~-----~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 272 DFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFE-----EQTVESLAAAVERFEKNE 327 (351)
T ss_pred CCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeC-----CCCHHHHHHHHHHHHhCc
Confidence 44 35789999999999976432 33345555 6677776 457888999999999986
No 99
>PLN00142 sucrose synthase
Probab=98.44 E-value=8.5e-05 Score=77.65 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=50.1
Q ss_pred CCCceEEe----eecHHHHhc----ccCccceecc---Cchh-hHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEE
Q 012645 321 GETGLVVR----WCNQFEVLA----HQAVGCFITH---CGWN-SILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVR 388 (459)
Q Consensus 321 ~~~v~v~~----~~p~~~lL~----~~~~~~~I~H---GG~g-s~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~ 388 (459)
.++|.+.+ ..+..++.. ..++ ||.- -|.| ++.||+++|+|+|+... ......++.- .-|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEE
Confidence 46666654 333344543 2344 6643 5554 89999999999988654 3344445544 45777
Q ss_pred eeecCCCcccHHHHHHHHHHH----hcCh
Q 012645 389 AKKNRAGIVTGEELNKCVNEV----MDGE 413 (459)
Q Consensus 389 ~~~~~~~~~~~~~l~~~i~~l----l~~~ 413 (459)
++. -+++.+.++|.++ ++|+
T Consensus 714 V~P-----~D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 714 IDP-----YHGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcCCH
Confidence 663 4677777777654 4676
No 100
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.42 E-value=9.3e-07 Score=70.69 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=80.6
Q ss_pred cEEEEEeCCcccC---CHHHHHHHHHHHHhCCC-cEEEEEeCCCCCCchhhhh-hcCCC--ceEEeeecH-HHHhcccCc
Q 012645 270 SVIYVSFGSMADI---AANQVDEIARGLKASEK-PFLWVVKENENKLPVEFVN-SVGET--GLVVRWCNQ-FEVLAHQAV 341 (459)
Q Consensus 270 ~~V~vs~Gs~~~~---~~~~~~~i~~a~~~~~~-~~v~~~~~~~~~~~~~~~~-~~~~~--v~v~~~~p~-~~lL~~~~~ 341 (459)
..+||+-||.... ....-...++.+.+.|. +.++..+.+....++.... +--+. +...+|-|- .+..+.+++
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 3899999998631 12223345667777776 4667777653111111110 00122 223477786 477777888
Q ss_pred cceeccCchhhHHHhhhcCCeeecccc----ccchhhHHHHHHHhhhceEEeeec
Q 012645 342 GCFITHCGWNSILEGLSLGVAVVAVPQ----FSDQPTNAKFVEEVWEVGVRAKKN 392 (459)
Q Consensus 342 ~~~I~HGG~gs~~eal~~GvP~li~P~----~~DQ~~na~rv~~~~G~G~~~~~~ 392 (459)
+|.|+|.||++|.|..|+|.|+++- .-.|..-|..++++ |-=......
T Consensus 84 --VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ps 135 (170)
T KOG3349|consen 84 --VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTPS 135 (170)
T ss_pred --EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeecc
Confidence 9999999999999999999999993 45799999999999 765555543
No 101
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=0.00087 Score=63.96 Aligned_cols=316 Identities=14% Similarity=0.161 Sum_probs=176.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-cCccccccCC---CCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASK--RVKATLAT-THYTVKSIHA---TTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~-~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
.+-+=.-|.|-++-.++|.++|+++ +..|++-+ ++...+.+++ ..+....+|-+.
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~------------------- 111 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDL------------------- 111 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCc-------------------
Confidence 3444456899999999999999998 88888887 5555555444 123333343111
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCchh--HHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCccc
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLLTW--ALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLT 161 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~--~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (459)
...+...++.+ +||++|.-....| ...-+++.|+|.+.+..--
T Consensus 112 ---~~~v~rFl~~~-----~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL--------------------------- 156 (419)
T COG1519 112 ---PIAVRRFLRKW-----RPKLLIIMETELWPNLINELKRRGIPLVLVNARL--------------------------- 156 (419)
T ss_pred ---hHHHHHHHHhc-----CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeee---------------------------
Confidence 12334555666 8999886555555 4556778999999974311
Q ss_pred CCCCCCCCCCCCCccccCCCCChHHHHHHHHHhhcccCCceEEEcchhHhhHHHHHHHhcCCCeeeecccCCCccccccc
Q 012645 162 LPGLPSLASSDLPSFLAQPASNPAYLAAILEQFGSLNKNDWVLCNSFEELEKELLRAMLGLWPLVMIGPLVPSAYLDQQI 241 (459)
Q Consensus 162 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~ 241 (459)
..+. ...+.......+..+ .+-+.++..+-.+-+. ...+- ..++..+|.+=...
T Consensus 157 -------S~rS-------~~~y~k~~~~~~~~~---~~i~li~aQse~D~~R--f~~LG-a~~v~v~GNlKfd~------ 210 (419)
T COG1519 157 -------SDRS-------FARYAKLKFLARLLF---KNIDLILAQSEEDAQR--FRSLG-AKPVVVTGNLKFDI------ 210 (419)
T ss_pred -------chhh-------hHHHHHHHHHHHHHH---HhcceeeecCHHHHHH--HHhcC-CcceEEecceeecC------
Confidence 0000 011111112222222 2345666665443332 11111 12355566432221
Q ss_pred cCCccCCCCCCCCChh---hhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCch--
Q 012645 242 AGDSAYGANIWEPTGD---QCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKAS--EKPFLWVVKENENKLPV-- 314 (459)
Q Consensus 242 ~~~~~~g~~~~~~~~~---~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~--~~~~v~~~~~~~~~~~~-- 314 (459)
.....+.. .+...+... ..+.|..+|... +.+..-....++.+. +...||+=...+ ..++
T Consensus 211 --------~~~~~~~~~~~~~r~~l~~~---r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHpE-Rf~~v~ 277 (419)
T COG1519 211 --------EPPPQLAAELAALRRQLGGH---RPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHPE-RFKAVE 277 (419)
T ss_pred --------CCChhhHHHHHHHHHhcCCC---CceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCChh-hHHHHH
Confidence 00001111 233333332 367777777543 334444455555553 344455432221 1100
Q ss_pred ------hh----hhh-----cCCCceEEeeecHH-HHhcccCc----cceeccCchhhHHHhhhcCCeeeccccccchhh
Q 012645 315 ------EF----VNS-----VGETGLVVRWCNQF-EVLAHQAV----GCFITHCGWNSILEGLSLGVAVVAVPQFSDQPT 374 (459)
Q Consensus 315 ------~~----~~~-----~~~~v~v~~~~p~~-~lL~~~~~----~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~ 374 (459)
++ .++ ...+|.+.|-+=-+ .+++-+++ +.++-+||+| ..|+++.|+|+|.=|...-|.+
T Consensus 278 ~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~e 356 (419)
T COG1519 278 NLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSD 356 (419)
T ss_pred HHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHH
Confidence 00 011 12367777766433 55555555 4467799998 5799999999999999999999
Q ss_pred HHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChh-hHHHHHHHHHHHH
Q 012645 375 NAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGER-SQKIKRNVSKWRE 427 (459)
Q Consensus 375 na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~ 427 (459)
-++++.+. |.|..++ + .+.|.+++..+++|++ .+.|.+++.++-.
T Consensus 357 i~~~l~~~-ga~~~v~-----~--~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 357 IAERLLQA-GAGLQVE-----D--ADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred HHHHHHhc-CCeEEEC-----C--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999 9998886 4 7888889988888762 1334444443333
No 102
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.30 E-value=0.00092 Score=67.63 Aligned_cols=134 Identities=7% Similarity=0.014 Sum_probs=75.0
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhh---hhhcCCCceEEeeecHH---HHhcccCc
Q 012645 269 KSVIYVSFGSMAD-IAANQVDEIARGLKASEKPFLWVVKENENKLPVEF---VNSVGETGLVVRWCNQF---EVLAHQAV 341 (459)
Q Consensus 269 ~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~v~v~~~~p~~---~lL~~~~~ 341 (459)
+.++++..|.... -..+.+...+..+.+.+.+++++..+. ....+.+ ....+.++.+....+.. .+++.+++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv 368 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD-PELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADF 368 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC-HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCE
Confidence 3466777788754 223333333333333455666554321 1111122 12345667666555544 47777777
Q ss_pred cceecc---Cchh-hHHHhhhcCCeeecccccc--chhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhc
Q 012645 342 GCFITH---CGWN-SILEGLSLGVAVVAVPQFS--DQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMD 411 (459)
Q Consensus 342 ~~~I~H---GG~g-s~~eal~~GvP~li~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 411 (459)
+|.- -|.| +.+||+++|+|.|+....+ |.-.+...-... +.|..++ ..+++.+.++|.+++.
T Consensus 369 --~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~-----~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 369 --ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFE-----EYDPGALLAALSRALR 436 (473)
T ss_pred --EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeC-----CCCHHHHHHHHHHHHH
Confidence 7743 3444 7889999999999876432 222111000233 4566665 5678999999999887
No 103
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.26 E-value=0.00036 Score=69.07 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=48.9
Q ss_pred EeeecHHHHhcccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHH
Q 012645 327 VRWCNQFEVLAHQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEEL 402 (459)
Q Consensus 327 ~~~~p~~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l 402 (459)
.++.+..+++...++ ||.- |=..+++||+++|+|+|+.-.... ..+..- +-|... -+.+.+
T Consensus 289 ~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~-~ng~~~-------~~~~~~ 353 (462)
T PLN02846 289 PGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQF-PNCRTY-------DDGKGF 353 (462)
T ss_pred CCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecC-CceEec-------CCHHHH
Confidence 356666679977777 8876 344689999999999998864331 222222 333222 257799
Q ss_pred HHHHHHHhcCh
Q 012645 403 NKCVNEVMDGE 413 (459)
Q Consensus 403 ~~~i~~ll~~~ 413 (459)
.+++.++|+++
T Consensus 354 a~ai~~~l~~~ 364 (462)
T PLN02846 354 VRATLKALAEE 364 (462)
T ss_pred HHHHHHHHccC
Confidence 99999999864
No 104
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.23 E-value=0.0013 Score=66.67 Aligned_cols=135 Identities=7% Similarity=0.002 Sum_probs=74.8
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhh---hhcCCCceEEeeecHH---HHhcccCc
Q 012645 269 KSVIYVSFGSMAD-IAANQVDEIARGLKASEKPFLWVVKENENKLPVEFV---NSVGETGLVVRWCNQF---EVLAHQAV 341 (459)
Q Consensus 269 ~~~V~vs~Gs~~~-~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~v~~~~p~~---~lL~~~~~ 341 (459)
+.++++..|.... -..+.+...+..+...+.+++++.... ....+.+. ...++|+.+..-.++. .+++.+++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv 373 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-PEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADF 373 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCE
Confidence 3466777787763 223333333333433455655554332 11111111 2235677765444443 46777777
Q ss_pred cceecc---Cch-hhHHHhhhcCCeeecccccc--chhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 342 GCFITH---CGW-NSILEGLSLGVAVVAVPQFS--DQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 342 ~~~I~H---GG~-gs~~eal~~GvP~li~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
++.- -|. .+.+||+++|+|.|+....+ |--.+...-.+. |.|..++ ..+++++.+++.++++.
T Consensus 374 --~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~-----~~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 374 --FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFE-----GYNADALLAALRRALAL 442 (476)
T ss_pred --EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeC-----CCCHHHHHHHHHHHHHH
Confidence 7743 223 47789999999999765432 222111111134 5787776 46789999999998863
No 105
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.23 E-value=0.001 Score=64.95 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=72.5
Q ss_pred cEEEEEeCCccc-CCHHHHHHHHHHHH-h-CCCcEEEEEeCCC-CCCc----hhhh--hhcCCCceEEeee--cHH---H
Q 012645 270 SVIYVSFGSMAD-IAANQVDEIARGLK-A-SEKPFLWVVKENE-NKLP----VEFV--NSVGETGLVVRWC--NQF---E 334 (459)
Q Consensus 270 ~~V~vs~Gs~~~-~~~~~~~~i~~a~~-~-~~~~~v~~~~~~~-~~~~----~~~~--~~~~~~v~v~~~~--p~~---~ 334 (459)
..+++..|.+.. -..+.+-..+..+. . .+.+++++..+.. +... .... ....+++.+.++. ++. .
T Consensus 190 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 269 (372)
T cd03792 190 RPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNA 269 (372)
T ss_pred CcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHH
Confidence 367777888754 22233333333232 2 3455555443321 1110 1111 1234678888776 333 5
Q ss_pred HhcccCccceeccC---c-hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHh
Q 012645 335 VLAHQAVGCFITHC---G-WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 335 lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 410 (459)
+++.+++ |+.-. | ..++.||+++|+|+|+.... .....+..- ..|...+ +.+.+..+|.+++
T Consensus 270 ~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-------~~~~~a~~i~~ll 335 (372)
T cd03792 270 LQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-------TVEEAAVRILYLL 335 (372)
T ss_pred HHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-------CcHHHHHHHHHHH
Confidence 6777777 77533 3 34999999999999987643 223334444 4565332 3467778999999
Q ss_pred cCh
Q 012645 411 DGE 413 (459)
Q Consensus 411 ~~~ 413 (459)
+++
T Consensus 336 ~~~ 338 (372)
T cd03792 336 RDP 338 (372)
T ss_pred cCH
Confidence 886
No 106
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=0.0006 Score=64.34 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=107.9
Q ss_pred Ceeeec-ccCCCccccccccCCccCCCCCCCCChhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-----C
Q 012645 224 PLVMIG-PLVPSAYLDQQIAGDSAYGANIWEPTGDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKA-----S 297 (459)
Q Consensus 224 ~~~~vg-p~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~-----~ 297 (459)
+..||| |+....+ ..++.+...+-+....+++++.+-.||....-...+..+.++... .
T Consensus 157 ~~~yVGHpl~d~i~---------------~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~ 221 (381)
T COG0763 157 PCTYVGHPLADEIP---------------LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYP 221 (381)
T ss_pred CeEEeCChhhhhcc---------------ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCC
Confidence 488999 5554421 223344455556555567799999999864222222223333332 4
Q ss_pred CCcEEEEEeCCC-CCCchhhhhhcCCCc-eEEeee-c-HH-HHhcccCccceeccCchhhHHHhhhcCCeeecccc-ccc
Q 012645 298 EKPFLWVVKENE-NKLPVEFVNSVGETG-LVVRWC-N-QF-EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQ-FSD 371 (459)
Q Consensus 298 ~~~~v~~~~~~~-~~~~~~~~~~~~~~v-~v~~~~-p-~~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~-~~D 371 (459)
+.++++-+.... ....... ...++ ...-++ + +. .++..+|+ .+.-+|- -++|+..+|+|||+.=- ..=
T Consensus 222 ~~~~vlp~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~i 295 (381)
T COG0763 222 DLKFVLPLVNAKYRRIIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPI 295 (381)
T ss_pred CceEEEecCcHHHHHHHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHH
Confidence 466666554321 1111111 11111 122222 2 22 46756666 6666654 56899999999987521 111
Q ss_pred hhhHHHHHHHhhhce-----------EEeeecCCCcccHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHhcCCCc
Q 012645 372 QPTNAKFVEEVWEVG-----------VRAKKNRAGIVTGEELNKCVNEVMDGE-RSQKIKRNVSKWREFAKKAVSAGGSS 439 (459)
Q Consensus 372 Q~~na~rv~~~~G~G-----------~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~l~~~~~~~~~~~g~s 439 (459)
-..-|.+..+.+=++ ..+-. ..++++.|.+++..++.|+ +++.+++...++++.++. ++++
T Consensus 296 t~~iak~lvk~~yisLpNIi~~~~ivPEliq---~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~ 368 (381)
T COG0763 296 TYFIAKRLVKLPYVSLPNILAGREIVPELIQ---EDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPAS 368 (381)
T ss_pred HHHHHHHhccCCcccchHHhcCCccchHHHh---hhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHH
Confidence 223344444431111 11111 2688999999999999987 345677777777777653 3455
Q ss_pred HHHHHHHHHHH
Q 012645 440 DKNIDEFVVRL 450 (459)
Q Consensus 440 ~~~~~~~~~~l 450 (459)
+.+++.+++.+
T Consensus 369 e~aA~~vl~~~ 379 (381)
T COG0763 369 EIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHh
Confidence 66666665543
No 107
>PLN02949 transferase, transferring glycosyl groups
Probab=98.15 E-value=0.0034 Score=62.91 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=58.6
Q ss_pred cCCCceEEeeecHH---HHhcccCccceec---cCchh-hHHHhhhcCCeeecccccc---chhhHHHHHHHhhhceEEe
Q 012645 320 VGETGLVVRWCNQF---EVLAHQAVGCFIT---HCGWN-SILEGLSLGVAVVAVPQFS---DQPTNAKFVEEVWEVGVRA 389 (459)
Q Consensus 320 ~~~~v~v~~~~p~~---~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~li~P~~~---DQ~~na~rv~~~~G~G~~~ 389 (459)
+.++|.+.+++|+. .+|+.+++ +|+ +-|+| ++.||+++|+|+|+....+ |.-.+. ..-..|..
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l- 405 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFL- 405 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCccccc-
Confidence 35789999999866 46767776 763 34444 7999999999999986432 111100 00011211
Q ss_pred eecCCCcccHHHHHHHHHHHhcC-hh-hHHHHHHHHHHHH
Q 012645 390 KKNRAGIVTGEELNKCVNEVMDG-ER-SQKIKRNVSKWRE 427 (459)
Q Consensus 390 ~~~~~~~~~~~~l~~~i~~ll~~-~~-~~~~~~~a~~l~~ 427 (459)
--+++++.++|.+++++ ++ .+++.+++++-.+
T Consensus 406 ------~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~ 439 (463)
T PLN02949 406 ------ATTVEEYADAILEVLRMRETERLEIAAAARKRAN 439 (463)
T ss_pred ------CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12789999999999984 31 2345555554433
No 108
>PLN02316 synthase/transferase
Probab=98.13 E-value=0.0077 Score=65.05 Aligned_cols=132 Identities=9% Similarity=0.056 Sum_probs=71.7
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHh---CCCcEEEEEeCCCCCCchhhh---hh----cCCCceEEeeecHH---HHhc
Q 012645 271 VIYVSFGSMADIAANQVDEIARGLKA---SEKPFLWVVKENENKLPVEFV---NS----VGETGLVVRWCNQF---EVLA 337 (459)
Q Consensus 271 ~V~vs~Gs~~~~~~~~~~~i~~a~~~---~~~~~v~~~~~~~~~~~~~~~---~~----~~~~v~v~~~~p~~---~lL~ 337 (459)
++++..|..... ..+..+++|+.. .+.++|++-.+.+..+...+. .+ .+++|.+....+.. .+++
T Consensus 841 plVg~VGRL~~q--KGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya 918 (1036)
T PLN02316 841 PLVGIITRLTHQ--KGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA 918 (1036)
T ss_pred eEEEEEeccccc--cCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH
Confidence 566666766531 223334444433 356666543321111111221 11 24567766544543 4786
Q ss_pred ccCccceeccC---c-hhhHHHhhhcCCeeecccccc--chhhH-------HHHHHHhhhceEEeeecCCCcccHHHHHH
Q 012645 338 HQAVGCFITHC---G-WNSILEGLSLGVAVVAVPQFS--DQPTN-------AKFVEEVWEVGVRAKKNRAGIVTGEELNK 404 (459)
Q Consensus 338 ~~~~~~~I~HG---G-~gs~~eal~~GvP~li~P~~~--DQ~~n-------a~rv~~~~G~G~~~~~~~~~~~~~~~l~~ 404 (459)
.+|+ |+.-. | .-+.+||+++|+|.|+....+ |.... +...... +-|...+ ..+++.|..
T Consensus 919 aADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tGflf~-----~~d~~aLa~ 990 (1036)
T PLN02316 919 GADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNGFSFD-----GADAAGVDY 990 (1036)
T ss_pred hCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-CceEEeC-----CCCHHHHHH
Confidence 7777 88532 3 358899999999888765432 22211 1111112 3465555 578899999
Q ss_pred HHHHHhcC
Q 012645 405 CVNEVMDG 412 (459)
Q Consensus 405 ~i~~ll~~ 412 (459)
+|.++|.+
T Consensus 991 AL~raL~~ 998 (1036)
T PLN02316 991 ALNRAISA 998 (1036)
T ss_pred HHHHHHhh
Confidence 99999975
No 109
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.06 E-value=0.00091 Score=67.66 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=87.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCC--CCCchhhhh-hcCCCceEEeeecHHHHhcccCcc
Q 012645 271 VIYVSFGSMADIAANQVDEIARGLKA-----SEKPFLWVVKENE--NKLPVEFVN-SVGETGLVVRWCNQFEVLAHQAVG 342 (459)
Q Consensus 271 ~V~vs~Gs~~~~~~~~~~~i~~a~~~-----~~~~~v~~~~~~~--~~~~~~~~~-~~~~~v~v~~~~p~~~lL~~~~~~ 342 (459)
.++++.|..... ..+..+++|+.. .+.++++ ++.+. ..+.+-..+ ...++|.+.++.+...+++.+++
T Consensus 320 ~~il~vGrl~~~--Kg~~~li~A~~~l~~~~p~~~l~i-~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv- 395 (500)
T TIGR02918 320 FSIITASRLAKE--KHIDWLVKAVVKAKKSVPELTFDI-YGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYEL- 395 (500)
T ss_pred eEEEEEeccccc--cCHHHHHHHHHHHHhhCCCeEEEE-EECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCE-
Confidence 566777887532 233444444432 2333333 34321 112111111 13467888898888899988888
Q ss_pred ceec---cCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCccc----HHHHHHHHHHHhcChh
Q 012645 343 CFIT---HCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVT----GEELNKCVNEVMDGER 414 (459)
Q Consensus 343 ~~I~---HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~----~~~l~~~i~~ll~~~~ 414 (459)
+|. .-|. .++.||+++|+|+|+.-... .+...++.- .-|..++.... .-+ .+.|+++|.++++++.
T Consensus 396 -~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~-~~d~~~~~~~la~~I~~ll~~~~ 469 (500)
T TIGR02918 396 -YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEE-EDDEDQIITALAEKIVEYFNSND 469 (500)
T ss_pred -EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcc-ccchhHHHHHHHHHHHHHhChHH
Confidence 665 3444 58999999999999865421 123334444 45766652100 122 7889999999996654
Q ss_pred hHHHHHHHHHHHHHHH
Q 012645 415 SQKIKRNVSKWREFAK 430 (459)
Q Consensus 415 ~~~~~~~a~~l~~~~~ 430 (459)
.+.+.+++++.++.+.
T Consensus 470 ~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 470 IDAFHEYSYQIAEGFL 485 (500)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4566777776655443
No 110
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.04 E-value=0.0072 Score=59.09 Aligned_cols=125 Identities=16% Similarity=0.120 Sum_probs=71.5
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHH---HhcccCcccee-
Q 012645 271 VIYVSFGSMAD-IAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFE---VLAHQAVGCFI- 345 (459)
Q Consensus 271 ~V~vs~Gs~~~-~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~---lL~~~~~~~~I- 345 (459)
++++-.|++.. ...+.+..+.. ...+..++++............ ...+||++.+++|+.+ .++++++..+-
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~--~~p~~~~vliG~~~~~~~~~~~--~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~ 281 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAK--ARPDWSFVLIGPVDVSIDPSAL--LRLPNVHYLGPKPYKELPAYLAGFDVAILPF 281 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHH--HCCCCEEEEECCCcCccChhHh--ccCCCEEEeCCCCHHHHHHHHHhCCEEecCC
Confidence 55666788764 23333333222 2245666665432111111111 1247999999998764 57777773321
Q ss_pred -----ccCch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 346 -----THCGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 346 -----~HGG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+.++. +.+.|++++|+|+|..++ ...++.. + |..+. .-+++++.++|.+++.++
T Consensus 282 ~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~-----~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 282 RLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLI-----ADDPEEFVAAIEKALLED 341 (373)
T ss_pred ccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEe-----CCCHHHHHHHHHHHHhcC
Confidence 23343 358999999999998763 2223333 3 33333 347999999999987654
No 111
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.03 E-value=0.0083 Score=54.80 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc--cccccCCCCceEEEcCCCCCCCCCCCCCCHH-HHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY--TVKSIHATTVGVEPISDGFDEGGFKQAPSVK-AYLESFKT 84 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 84 (459)
|||.|= .+-.-|+-=+-.+-+.|.++||+|.+.+-+. -.+.+...|+.+..+...-. ..+. +......+
T Consensus 1 mkVwiD-I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~-------~tl~~Kl~~~~eR 72 (346)
T COG1817 1 MKVWID-IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGG-------VTLKEKLLESAER 72 (346)
T ss_pred CeEEEE-cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCC-------ccHHHHHHHHHHH
Confidence 344443 3555688888999999999999998877643 33445667999998863311 1222 33333333
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccch
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~ 134 (459)
. ..+.+++.+. +||+.+. -.+..+..+|.-+|+|++.+.-+.
T Consensus 73 ~--~~L~ki~~~~-----kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 73 V--YKLSKIIAEF-----KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred H--HHHHHHHhhc-----CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 2 4566677765 8999999 567889999999999999987655
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.00 E-value=0.0021 Score=65.07 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=59.4
Q ss_pred CCCceEEeeecHHHHhcccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHh----hh-ceEEeee
Q 012645 321 GETGLVVRWCNQFEVLAHQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEV----WE-VGVRAKK 391 (459)
Q Consensus 321 ~~~v~v~~~~p~~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~----~G-~G~~~~~ 391 (459)
.+||++.+.....++++.+++ +|.- |--.++.||+++|+|+|+. |.......++.. +| .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEEC-
Confidence 578888886666688877777 6643 3346899999999999884 334444455552 02 566665
Q ss_pred cCCCcccHHHHHHHHHHHhcCh
Q 012645 392 NRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 392 ~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
..+++++.++|.++++|+
T Consensus 426 ----~~d~~~la~ai~~ll~~~ 443 (475)
T cd03813 426 ----PADPEALARAILRLLKDP 443 (475)
T ss_pred ----CCCHHHHHHHHHHHhcCH
Confidence 467999999999999987
No 113
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.97 E-value=0.0016 Score=63.57 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=69.0
Q ss_pred cCCCceEEeeecHH-HHhcccCccceecc--CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCc
Q 012645 320 VGETGLVVRWCNQF-EVLAHQAVGCFITH--CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGI 396 (459)
Q Consensus 320 ~~~~v~v~~~~p~~-~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 396 (459)
..+++.+.++.++. .+++.+++-.+.++ |...++.||+++|+|+|+..... .....++.- ..|..++ .
T Consensus 259 ~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~-----~ 329 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVP-----K 329 (372)
T ss_pred CcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeC-----C
Confidence 34677777776665 78988888444444 33468999999999999865321 133444555 5676665 4
Q ss_pred ccHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHH
Q 012645 397 VTGEELNKCVNEVMDGER-SQKIKRNVSKWREFA 429 (459)
Q Consensus 397 ~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~ 429 (459)
-+.+++.++|.++++|++ .+.+.+++++.++.+
T Consensus 330 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 330 GDIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999873 345666666655444
No 114
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.92 E-value=0.017 Score=57.44 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred cCCCceEEeeecHH---HHhcccCccceecc---Cch-hhHHHhhhcCCeeeccccccchhhHHHHHH----HhhhceEE
Q 012645 320 VGETGLVVRWCNQF---EVLAHQAVGCFITH---CGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVE----EVWEVGVR 388 (459)
Q Consensus 320 ~~~~v~v~~~~p~~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~----~~~G~G~~ 388 (459)
..++|.+.+++|+. .+|+.+++ +|+- -|. -++.||+++|+|.|+.-..+. ..-+. .- ..|..
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp----~~~iv~~~~~g-~~G~l 375 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP----LLDIVVPWDGG-PTGFL 375 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC----chheeeccCCC-CceEE
Confidence 35789999999876 57777777 6642 233 478999999999987653221 11112 23 45543
Q ss_pred eeecCCCcccHHHHHHHHHHHhcCh
Q 012645 389 AKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 389 ~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
. . +++++.+++.++++++
T Consensus 376 ~------~-d~~~la~ai~~ll~~~ 393 (419)
T cd03806 376 A------S-TAEEYAEAIEKILSLS 393 (419)
T ss_pred e------C-CHHHHHHHHHHHHhCC
Confidence 2 3 7899999999999875
No 115
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00023 Score=56.16 Aligned_cols=109 Identities=22% Similarity=0.192 Sum_probs=72.3
Q ss_pred EEEEeCCcccCCHHHH--HHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeee--c-HHHHhcccCccceec
Q 012645 272 IYVSFGSMADIAANQV--DEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWC--N-QFEVLAHQAVGCFIT 346 (459)
Q Consensus 272 V~vs~Gs~~~~~~~~~--~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~--p-~~~lL~~~~~~~~I~ 346 (459)
+|||-||....-...+ .++.+-.+....++|+..++. +..| ..+ .++.+|. + -..+...+++ +|+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~-d~kp------vag-l~v~~F~~~~kiQsli~darI--VIS 71 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG-DIKP------VAG-LRVYGFDKEEKIQSLIHDARI--VIS 71 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC-Cccc------ccc-cEEEeechHHHHHHHhhcceE--EEe
Confidence 7899999853111111 113444455566888888875 2222 111 2344443 4 3367755555 999
Q ss_pred cCchhhHHHhhhcCCeeecccccc--------chhhHHHHHHHhhhceEEeee
Q 012645 347 HCGWNSILEGLSLGVAVVAVPQFS--------DQPTNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 347 HGG~gs~~eal~~GvP~li~P~~~--------DQ~~na~rv~~~~G~G~~~~~ 391 (459)
|+|-||++.++..++|.|++|-.. .|..-|..+.++ +.-....+
T Consensus 72 HaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~sp 123 (161)
T COG5017 72 HAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSP 123 (161)
T ss_pred ccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcC
Confidence 999999999999999999999543 478889999999 77666654
No 116
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.78 E-value=0.00049 Score=67.63 Aligned_cols=138 Identities=21% Similarity=0.266 Sum_probs=81.6
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC---CCCchhhhhh--cCCCceEEeeecHHHHh---cc
Q 012645 267 PEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE---NKLPVEFVNS--VGETGLVVRWCNQFEVL---AH 338 (459)
Q Consensus 267 ~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~---~~~~~~~~~~--~~~~v~v~~~~p~~~lL---~~ 338 (459)
+++.++|.+|.+..+..++.+..-.+.+++.+...+|...... ..+...+... .++++.+.+..|..+-| ..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 3456999999999999999999999999998888888876543 1111111111 24677777887766544 33
Q ss_pred cCccce---eccCchhhHHHhhhcCCeeeccccc-cchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 339 QAVGCF---ITHCGWNSILEGLSLGVAVVAVPQF-SDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 339 ~~~~~~---I~HGG~gs~~eal~~GvP~li~P~~-~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
.|+ + ...+|.+|++|||+.|||+|.+|-- .=...-|..+..+ |+...+- .+.++-.+.-.++-+|.
T Consensus 362 ~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA------~s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 362 ADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIA------DSEEEYVEIAVRLATDP 431 (468)
T ss_dssp -SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-------SSHHHHHHHHHHHHH-H
T ss_pred CCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcC------CCHHHHHHHHHHHhCCH
Confidence 554 4 3578999999999999999999943 3445566677778 9987654 34555555555677776
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.69 E-value=0.0005 Score=59.00 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=82.5
Q ss_pred CCCcEEEEEeCCccc-CCHHHHHHHHHHHH---hCCCcEEEEEeCCC--CCCchhhh-hhcCCCceEEeeec--H-HHHh
Q 012645 267 PEKSVIYVSFGSMAD-IAANQVDEIARGLK---ASEKPFLWVVKENE--NKLPVEFV-NSVGETGLVVRWCN--Q-FEVL 336 (459)
Q Consensus 267 ~~~~~V~vs~Gs~~~-~~~~~~~~i~~a~~---~~~~~~v~~~~~~~--~~~~~~~~-~~~~~~v~v~~~~p--~-~~lL 336 (459)
++++.+++..|+... -..+.+-.++.-+. ...+.+++ ++... ..+..... .....++.+.++++ + ..++
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 90 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVI-VGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELY 90 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEE-ESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEE-Eccccccccccccccccccccccccccccccccccccc
Confidence 345577788888764 22333333333222 23333333 33221 11111111 12457888999998 2 2688
Q ss_pred cccCccceecc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 337 AHQAVGCFITH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 337 ~~~~~~~~I~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
..+++ +|+. |...++.||+++|+|+|+. |...+...+... +.|..++ ..+.+++.++|.+++++
T Consensus 91 ~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~-----~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 91 KSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFD-----PNDIEELADAIEKLLND 158 (172)
T ss_dssp HHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEES-----TTSHHHHHHHHHHHHHH
T ss_pred cccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeC-----CCCHHHHHHHHHHHHCC
Confidence 78777 8877 6677999999999999864 455566666666 6687776 45999999999999998
Q ss_pred h
Q 012645 413 E 413 (459)
Q Consensus 413 ~ 413 (459)
+
T Consensus 159 ~ 159 (172)
T PF00534_consen 159 P 159 (172)
T ss_dssp H
T ss_pred H
Confidence 6
No 118
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.61 E-value=0.0017 Score=64.38 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=79.7
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHh---C--CCcEEEEEeCCCCCCchhhhh-----hcCCCceEEeeecHHH---H
Q 012645 269 KSVIYVSFGSMADIAANQVDEIARGLKA---S--EKPFLWVVKENENKLPVEFVN-----SVGETGLVVRWCNQFE---V 335 (459)
Q Consensus 269 ~~~V~vs~Gs~~~~~~~~~~~i~~a~~~---~--~~~~v~~~~~~~~~~~~~~~~-----~~~~~v~v~~~~p~~~---l 335 (459)
++..+++.|...... .+..+++++.. . +.++.|.+-+. +...+.+.+ ...++|.+.+|+++.+ +
T Consensus 229 ~~~~il~~Grl~~~K--g~~~li~a~~~l~~~~p~~~l~~~iiG~-g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~ 305 (407)
T cd04946 229 DTLRIVSCSYLVPVK--RVDLIIKALAALAKARPSIKIKWTHIGG-GPLEDTLKELAESKPENISVNFTGELSNSEVYKL 305 (407)
T ss_pred CCEEEEEeecccccc--CHHHHHHHHHHHHHhCCCceEEEEEEeC-chHHHHHHHHHHhcCCCceEEEecCCChHHHHHH
Confidence 346677778776422 23333444333 2 24565544332 111111211 1235688889999764 4
Q ss_pred hcccCccceeccCc----hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhc
Q 012645 336 LAHQAVGCFITHCG----WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMD 411 (459)
Q Consensus 336 L~~~~~~~~I~HGG----~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 411 (459)
+..+++.++|...- -.+++||+++|+|+|+... ......+... +.|..+.. ..+.+++.++|.++++
T Consensus 306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~----~~~~~~la~~I~~ll~ 376 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK----DPTPNELVSSLSKFID 376 (407)
T ss_pred HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC----CCCHHHHHHHHHHHHh
Confidence 44444444765442 3589999999999988543 3345555555 57866653 3588999999999999
Q ss_pred Ch
Q 012645 412 GE 413 (459)
Q Consensus 412 ~~ 413 (459)
|+
T Consensus 377 ~~ 378 (407)
T cd04946 377 NE 378 (407)
T ss_pred CH
Confidence 86
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.60 E-value=0.0089 Score=53.25 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=50.4
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHH
Q 012645 17 AQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILK 96 (459)
Q Consensus 17 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (459)
..|+......|++.|.++||+|++.+ .....+...+++
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~------------------------------------------~~~~~~~~~~~~ 49 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA------------------------------------------LLLLLLLRILRG 49 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE------------------------------------------echHHHHHHHhh
Confidence 67999999999999999999999998 001111122222
Q ss_pred hhcCCCCccEEEeCCCchhHH---HHHHHcCCceEEEccch
Q 012645 97 YKDSESPVNCIVYDSLLTWAL---DVARQFGIYGAAMMTNS 134 (459)
Q Consensus 97 ~~~~~~~~Dlvi~D~~~~~~~---~~a~~lgiP~v~~~~~~ 134 (459)
.+||+|++........ ..+...++|++...+..
T Consensus 50 -----~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 85 (229)
T cd01635 50 -----FKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGV 85 (229)
T ss_pred -----cCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcCc
Confidence 2899999887665433 45778899988876544
No 120
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.53 E-value=0.0061 Score=59.77 Aligned_cols=83 Identities=13% Similarity=0.160 Sum_probs=60.3
Q ss_pred cCCCceEEeeecHH---HHhcccCccceecc----Cch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeee
Q 012645 320 VGETGLVVRWCNQF---EVLAHQAVGCFITH----CGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 320 ~~~~v~v~~~~p~~---~lL~~~~~~~~I~H----GG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~ 391 (459)
...++.+.+++|+. .+++.+++ +|.. .|. .++.||+++|+|+|+.... .+...++.- ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 45678888999865 56877887 6642 444 5778999999999987653 344445555 56764432
Q ss_pred cCCCcccHHHHHHHHHHHhcCh
Q 012645 392 NRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 392 ~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
..+++++.++|.++++|+
T Consensus 328 ----~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 328 ----PMTSDSIISDINRTLADP 345 (380)
T ss_pred ----CCCHHHHHHHHHHHHcCH
Confidence 467999999999999997
No 121
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.50 E-value=0.0024 Score=60.96 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=66.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC-CCce-EEEcCCCCCCCCCCCCCCHHHHHHHHHH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA-TTVG-VEPISDGFDEGGFKQAPSVKAYLESFKT 84 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (459)
|||++-....||+.=+.++.++|+++ +.+|++++.+.+.+.++. +.++ ++.++.. .. . .. .+. .
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~--~~--~--~~---~~~---~ 68 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALR--RW--R--KT---LFS---A 68 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechh--hh--h--hc---ccc---c
Confidence 68999999999999999999999997 999999999999888876 5564 5555421 00 0 00 000 0
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCc
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIY 126 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP 126 (459)
.....+..+.+.+++. ++|++|.-........++...+.+
T Consensus 69 ~~~~~~~~~~~~lr~~--~yD~vi~~~~~~~s~~l~~~~~~~ 108 (319)
T TIGR02193 69 ATWREIKALRALLRAE--RYDAVIDAQGLIKSALVARMARGP 108 (319)
T ss_pred hhHHHHHHHHHHHhhc--cchhhhhhhhhHHHHHHHHhhCCc
Confidence 0011222333334333 899998544434455566666644
No 122
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.46 E-value=0.14 Score=50.61 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=64.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcE-EEEEeCCCCCCchhhhhhcCCCceEEeeec-H---HHHhcccCcccee
Q 012645 271 VIYVSFGSMADIAANQVDEIARGLKASEKPF-LWVVKENENKLPVEFVNSVGETGLVVRWCN-Q---FEVLAHQAVGCFI 345 (459)
Q Consensus 271 ~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p-~---~~lL~~~~~~~~I 345 (459)
.+++..|.....+...+..+++|+...+.++ ++.++..+.. ...++...++.. + ..+++.+++ ||
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~--------~~~~v~~~g~~~~~~~l~~~y~~aDv--fV 311 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF--------TAGNVVNHGFETDKRKLMSALNQMDA--LV 311 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc--------cccceEEecCcCCHHHHHHHHHhCCE--EE
Confidence 3444455422222233466788887765443 3334332110 123455555553 2 345656777 77
Q ss_pred cc----CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHH
Q 012645 346 TH----CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCV 406 (459)
Q Consensus 346 ~H----GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i 406 (459)
.- |--.+++||+++|+|+|.....+ . ..+... +-|..++. -+.+.|++.+
T Consensus 312 ~pS~~Egfp~vilEAmA~G~PVVat~~gG----~-~Eiv~~-~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 312 FSSRVDNYPLILCEALSIGVPVIATHSDA----A-REVLQK-SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred ECCccccCcCHHHHHHHcCCCEEEeCCCC----h-HHhEeC-CcEEEECC-----CCHHHHHhcc
Confidence 53 33368999999999999987754 1 123334 55776763 4667777643
No 123
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.19 E-value=0.35 Score=50.06 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=51.5
Q ss_pred CceEEeeecHH-HHhcccCccceecc---Cc-hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcc
Q 012645 323 TGLVVRWCNQF-EVLAHQAVGCFITH---CG-WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIV 397 (459)
Q Consensus 323 ~v~v~~~~p~~-~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~ 397 (459)
++.+.++.++. .+++.+++ ||.- =| ..+++||+++|+|+|+.-..+... +..- +-| .+ --
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nG-ll------~~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNC-LT------YK 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCe-Ee------cC
Confidence 35566777765 58977777 7763 33 368999999999999987654321 1112 222 22 24
Q ss_pred cHHHHHHHHHHHhcCh
Q 012645 398 TGEELNKCVNEVMDGE 413 (459)
Q Consensus 398 ~~~~l~~~i~~ll~~~ 413 (459)
+.+.+.++|.++|+++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 6899999999999986
No 124
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.07 E-value=0.43 Score=48.40 Aligned_cols=114 Identities=20% Similarity=0.128 Sum_probs=65.7
Q ss_pred EEEEEeCCccc--CCHHHHHHHHHHHHh-CCCcEEEEEeCCC-CCCchhhhh-hcCCCceEEeeecHH-HHhcccCccce
Q 012645 271 VIYVSFGSMAD--IAANQVDEIARGLKA-SEKPFLWVVKENE-NKLPVEFVN-SVGETGLVVRWCNQF-EVLAHQAVGCF 344 (459)
Q Consensus 271 ~V~vs~Gs~~~--~~~~~~~~i~~a~~~-~~~~~v~~~~~~~-~~~~~~~~~-~~~~~v~v~~~~p~~-~lL~~~~~~~~ 344 (459)
+++.+.|.... .....+..+...++. .+.+++++..+.. +.+.....+ ...++|++.++..+. .+|+.+++ |
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADV--f 476 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNV--F 476 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCE--E
Confidence 45555565432 223334444444443 3455555443221 111111111 134788888887554 68888888 8
Q ss_pred ec---cCc-hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeee
Q 012645 345 IT---HCG-WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 345 I~---HGG-~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~ 391 (459)
|. .-| .+++.||+++|+|+|+... ..+...+..- ..|..++.
T Consensus 477 VlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 477 ILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD 522 (578)
T ss_pred EEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC
Confidence 75 345 4699999999999997654 3455556666 67777764
No 125
>PLN02939 transferase, transferring glycosyl groups
Probab=97.00 E-value=0.71 Score=49.71 Aligned_cols=133 Identities=9% Similarity=0.080 Sum_probs=72.0
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhh---hhhc--CCCceEEeeecHH---HHhcccCc
Q 012645 271 VIYVSFGSMAD-IAANQVDEIARGLKASEKPFLWVVKENENKLPVEF---VNSV--GETGLVVRWCNQF---EVLAHQAV 341 (459)
Q Consensus 271 ~V~vs~Gs~~~-~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~---~~~~--~~~v~v~~~~p~~---~lL~~~~~ 341 (459)
+++...|.... -..+.+...+..+...+.+++++..+........+ ..+. .++|.+..+.+.. .+++.+++
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADI 859 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDM 859 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCE
Confidence 56666677653 22233222222222345666555432111111112 1222 4678888887764 47877777
Q ss_pred cceecc---Cc-hhhHHHhhhcCCeeecccccc--chhhH--HHHH-HHhhhceEEeeecCCCcccHHHHHHHHHHHhc
Q 012645 342 GCFITH---CG-WNSILEGLSLGVAVVAVPQFS--DQPTN--AKFV-EEVWEVGVRAKKNRAGIVTGEELNKCVNEVMD 411 (459)
Q Consensus 342 ~~~I~H---GG-~gs~~eal~~GvP~li~P~~~--DQ~~n--a~rv-~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 411 (459)
||.- =| ..+.+||+++|+|.|+....+ |-..+ ...+ +.- +-|.... ..+++.|.++|.++++
T Consensus 860 --FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf~-----~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 860 --FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTFL-----TPDEQGLNSALERAFN 930 (977)
T ss_pred --EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEec-----CCCHHHHHHHHHHHHH
Confidence 8853 22 347899999999998876533 22211 1111 122 3455554 4678888888888764
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.98 E-value=0.0036 Score=51.21 Aligned_cols=127 Identities=21% Similarity=0.245 Sum_probs=66.0
Q ss_pred EEEEEeCCccc-CCHHHHHH-HHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHH-HHhcccCccceecc
Q 012645 271 VIYVSFGSMAD-IAANQVDE-IARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQF-EVLAHQAVGCFITH 347 (459)
Q Consensus 271 ~V~vs~Gs~~~-~~~~~~~~-i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~-~lL~~~~~~~~I~H 347 (459)
+.++++|+... ...+.+-. +++.+.+...++-+.+-+. .++.+.+...+||++.+|++.. ++++.+++....+.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~---~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~ 79 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN---GPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSR 79 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE---SS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BS
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC---CHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEee
Confidence 45556666543 23333333 5555544222333333221 2222221124699999999755 78888888555442
Q ss_pred --Cc-hhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 348 --CG-WNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 348 --GG-~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.| .+++.|++++|+|+|+.+.. ....++.. +.|..+ . -+++++.++|.++++|
T Consensus 80 ~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~--~----~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 80 FNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV--A----NDPEELAEAIERLLND 135 (135)
T ss_dssp S-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---T----T-HHHHHHHHHHHHH-
T ss_pred CCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE--C----CCHHHHHHHHHHHhcC
Confidence 23 48999999999999997761 22334446 777666 2 4899999999999875
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.96 E-value=0.46 Score=47.04 Aligned_cols=174 Identities=8% Similarity=0.142 Sum_probs=99.2
Q ss_pred hhhhccCCCCcEEEEEeCCcccC------C-H---HHHHHHHHHHHhCCCcEEEEEeCCC-C-CCc------hhhhhhcC
Q 012645 260 MRWLATKPEKSVIYVSFGSMADI------A-A---NQVDEIARGLKASEKPFLWVVKENE-N-KLP------VEFVNSVG 321 (459)
Q Consensus 260 ~~~l~~~~~~~~V~vs~Gs~~~~------~-~---~~~~~i~~a~~~~~~~~v~~~~~~~-~-~~~------~~~~~~~~ 321 (459)
..|+...+.++.|.|+....... . . ..+..+++.+...|++++++..... . ..+ ..+.+..+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 34554333456888886644311 1 1 2233455555556888776643211 0 011 11222222
Q ss_pred --CCceEE--eeecHH--HHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEE-eeecCC
Q 012645 322 --ETGLVV--RWCNQF--EVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVR-AKKNRA 394 (459)
Q Consensus 322 --~~v~v~--~~~p~~--~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~-~~~~~~ 394 (459)
.++++. ++-|.+ .+++++++ +|..= .=++.-|+..|||.+.++. | +-....++.+ |.... .+..
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~l-g~~~~~~~~~-- 375 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQL-GLPEMAIDIR-- 375 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHc-CCccEEechh--
Confidence 333443 233443 78866666 88642 2356668889999999998 3 4444555777 88876 5555
Q ss_pred CcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012645 395 GIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLL 451 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~ 451 (459)
.++.+.|.+.+.++++|.+ +++++.++--++.+. .+...+.++++.+-
T Consensus 376 -~l~~~~Li~~v~~~~~~r~--~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 376 -HLLDGSLQAMVADTLGQLP--ALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred -hCCHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 8999999999999999862 555555444444442 11345555555543
No 128
>PRK14099 glycogen synthase; Provisional
Probab=96.96 E-value=0.53 Score=47.71 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=30.8
Q ss_pred CCCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 5 RERVHVLVLTY--------PAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 5 ~~~~kil~~~~--------~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
|++||||+++. |+.|++ .-.|.++|+++||+|.++.+.+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCCC
Confidence 57799999983 444444 5678899999999999999854
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.83 E-value=0.013 Score=48.23 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=66.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc-CCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhch
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI-HATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGS 87 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (459)
|||+++.....| ...+++.|.++||+|++++.....+.. ...|+.+..++.. .......+ .. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~--------~k~~~~~~----~~-~ 64 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSP--------RKSPLNYI----KY-F 64 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCC--------CCccHHHH----HH-H
Confidence 578888766666 457799999999999999996554333 3468888888522 11111222 11 1
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCch---hHHHHHHHcC-CceEEEcc
Q 012645 88 RTLAEVILKYKDSESPVNCIVYDSLLT---WALDVARQFG-IYGAAMMT 132 (459)
Q Consensus 88 ~~~~~l~~~~~~~~~~~Dlvi~D~~~~---~~~~~a~~lg-iP~v~~~~ 132 (459)
.+..++++. +||+|.+..... .+..++...| +|.+...+
T Consensus 65 -~l~k~ik~~-----~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 65 -RLRKIIKKE-----KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred -HHHHHhccC-----CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 334455543 899998776543 2455667888 89886544
No 130
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.80 E-value=0.34 Score=46.69 Aligned_cols=104 Identities=7% Similarity=0.037 Sum_probs=70.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC-CCce-EEEcCCCCCCCCCCCCCCHHHHHHHHHH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA-TTVG-VEPISDGFDEGGFKQAPSVKAYLESFKT 84 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (459)
|||++-....||+.=+.++.++|+++ +.+|++++.+.+.+.++. +.++ ++.++.... ... . ..+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~------~~~-~---~~~~- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA------KAG-E---RKLA- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh------cch-H---HHHH-
Confidence 68999999999999999999999985 899999999999888776 5564 344431100 000 0 0011
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAA 129 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~ 129 (459)
....++..++.. ++|++|.=.....+..++...|.|.-+
T Consensus 70 ----~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 ----NQFHLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ----HHHHHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 111234444444 899998654445567788888988655
No 131
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.65 E-value=0.16 Score=49.09 Aligned_cols=102 Identities=9% Similarity=-0.001 Sum_probs=70.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC-CCceEEE-cCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA-TTVGVEP-ISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
||||++-..+.||+.=..++.++|+++ +.+|++++.+.+.+.++. +.++-+- ++.. ..... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~---------~~~~~-~---- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG---------HGALE-I---- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc---------cchhh-h----
Confidence 689999999999999999999999985 899999999999888876 5555432 3211 00000 0
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAA 129 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~ 129 (459)
....+++..++.. ++|++|.=....-...++...|+|.-.
T Consensus 67 ----~~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ----GERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ----HHHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1122344455444 899998654445566777777887654
No 132
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.65 E-value=0.092 Score=50.86 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=71.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC-CCceE-EEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA-TTVGV-EPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
.||||++-....||+.=..++.++|+++ +.+|++++.+.+.+.++. +.++- +.++.. ....... +
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~--------~~~~~~~---~ 73 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK--------KAGASEK---I 73 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc--------cccHHHH---H
Confidence 5799999999999999999999999986 899999999999888776 45543 333311 0000111 1
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAA 129 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~ 129 (459)
..+..++.+++.. ++|++|.-........++...|.|..+
T Consensus 74 -----~~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 74 -----KNFFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -----HHHHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 1122344555544 899999654444456667777877655
No 133
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.62 E-value=0.011 Score=56.80 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=76.1
Q ss_pred cCCCceEEeeecHHHHhcc-cCccceeccC--------ch------hhHHHhhhcCCeeeccccccchhhHHHHHHHhhh
Q 012645 320 VGETGLVVRWCNQFEVLAH-QAVGCFITHC--------GW------NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWE 384 (459)
Q Consensus 320 ~~~~v~v~~~~p~~~lL~~-~~~~~~I~HG--------G~------gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G 384 (459)
..+||.+.+|+|+.++..+ ...-++|.-+ .+ +-+.+.+++|+|+|+. ++...+..|++. +
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~ 279 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-G 279 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-C
Confidence 4578999999998866421 1111122221 11 1267789999999985 456788899999 9
Q ss_pred ceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 012645 385 VGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVV 448 (459)
Q Consensus 385 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~ 448 (459)
+|..++ +.+++.+++.++. +.+.+.+++|++++++.+++ |.-...++.+++.
T Consensus 280 ~G~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 998876 3457888888754 34456799999999999986 4444455555443
No 134
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.60 E-value=0.11 Score=49.51 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=43.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC-CCce
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA-TTVG 56 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~-~g~~ 56 (459)
||||++-....||+.=..++.+.|+++ +.+|++++.+.+.+.++. +.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 799999999999999999999999986 999999999988887765 4454
No 135
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.56 E-value=0.0029 Score=48.20 Aligned_cols=62 Identities=11% Similarity=0.261 Sum_probs=47.5
Q ss_pred hhhhhccCCCCcEEEEEeCCcccC---C--HHHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhhcCCCce
Q 012645 259 CMRWLATKPEKSVIYVSFGSMADI---A--ANQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVNSVGETGL 325 (459)
Q Consensus 259 l~~~l~~~~~~~~V~vs~Gs~~~~---~--~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~ 325 (459)
+..|+...+.++.|+||+||.... . ...+..+++++..++..+|..+.... +.+. .+|+||+
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg-----~lP~nVR 97 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELG-----ELPDNVR 97 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCC-----S-TTTEE
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhC-----CCCCCCC
Confidence 677999989999999999998752 2 25788899999999999999988654 2221 3566664
No 136
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.47 E-value=0.22 Score=46.44 Aligned_cols=101 Identities=7% Similarity=-0.004 Sum_probs=66.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEecCccccccCC-CCceE-EEcCCCCCCCCCCCCCCHHHHHHHHHH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKR--VKATLATTHYTVKSIHA-TTVGV-EPISDGFDEGGFKQAPSVKAYLESFKT 84 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (459)
|||++-..+.|++.-+.++.++|+++. .+|++++.+...+.++. +.++- +.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~------~~~~~--------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH------GKLGL--------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc------cccch---------
Confidence 689999999999999999999999975 89999999998888776 34433 3332110 00011
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAA 129 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~ 129 (459)
..+..++.+++.. ++|+++.=........++...+++...
T Consensus 66 ---~~~~~~~~~l~~~--~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 ---GARRRLARALRRR--RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ---HHHHHHHHHHhhc--CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1122344444433 899998655554445566666666544
No 137
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.18 E-value=0.7 Score=44.33 Aligned_cols=100 Identities=7% Similarity=-0.008 Sum_probs=68.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCC-CCceE-EEcCCCCCCCCCCCCCCHHHHHHHHHH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHA-TTVGV-EPISDGFDEGGFKQAPSVKAYLESFKT 84 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (459)
|||++-..+.||+.=..++.++|++. +.+|++++.+.+.+.++. +.++- +.++.. . .....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--~-------~~~~~------ 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--H-------GALEL------ 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--c-------cchhh------
Confidence 68999999999999999999999986 899999999988887775 45533 222211 0 00000
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceE
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGA 128 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v 128 (459)
.....++..++.. ++|++|.-........++...|+|.-
T Consensus 66 ---~~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 66 ---TERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred ---hHHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 0112344445444 89999976555556677777788754
No 138
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.09 E-value=0.063 Score=53.67 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=84.1
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhh------hcCCCceEEeeecHHHHhcc-
Q 012645 267 PEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVN------SVGETGLVVRWCNQFEVLAH- 338 (459)
Q Consensus 267 ~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~------~~~~~v~v~~~~p~~~lL~~- 338 (459)
++..+||.+|--..+.++..++.-++.++..+-.++|....+- +. .+|.. -.+++|++.+-++..+-.++
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--HHHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 3456999999888889999999999999999999999987764 11 22221 12566777666654443332
Q ss_pred ----cCccceeccCchhhHHHhhhcCCeeeccccccchh-hHHHHHHHhhhceEEeee
Q 012645 339 ----QAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQP-TNAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 339 ----~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~-~na~rv~~~~G~G~~~~~ 391 (459)
-.++...+. |..|.++.|+.|||||.+|.-.--. .-+-.+..+ |+|..+.+
T Consensus 834 ~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hliak 889 (966)
T KOG4626|consen 834 QLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIAK 889 (966)
T ss_pred hhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHhh
Confidence 223445555 7889999999999999999754333 334455667 99985553
No 139
>PHA01633 putative glycosyl transferase group 1
Probab=95.98 E-value=0.18 Score=48.15 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=63.4
Q ss_pred cCCCceEE---eeecHH---HHhcccCccceecc---Cch-hhHHHhhhcCCeeecccc------ccch------hhHHH
Q 012645 320 VGETGLVV---RWCNQF---EVLAHQAVGCFITH---CGW-NSILEGLSLGVAVVAVPQ------FSDQ------PTNAK 377 (459)
Q Consensus 320 ~~~~v~v~---~~~p~~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~li~P~------~~DQ------~~na~ 377 (459)
.+++|.+. +++++. .+++.+++ ||.- =|+ .+++||+++|+|+|..-. ..|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45788887 445543 67877777 7763 344 578899999999988633 2332 33333
Q ss_pred HHH--HhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 012645 378 FVE--EVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFA 429 (459)
Q Consensus 378 rv~--~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~ 429 (459)
... .. |.|..++ ..+++++.+++.+++...+.+...+++++.++++
T Consensus 277 ~~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 277 EYYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HhcCccc-Cceeeec-----CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 333 34 5555544 6899999999999965432223334444444443
No 140
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.94 E-value=0.035 Score=48.49 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=64.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----CCceEEEcCCCCCC---CCCCCCCCHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----TTVGVEPISDGFDE---GGFKQAPSVKAYL 79 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~---~~~~~~~~~~~~~ 79 (459)
||||+.---+. +.--+..|+++|.+.||+|+++.+...++-... ..++.......... ...........-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 78988887666 566688999999888899999999988765543 13333222110000 0001112222111
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCccEEEeCC----------Cc---hhHHHHHHHcCCceEEEccch
Q 012645 80 ESFKTVGSRTLAEVILKYKDSESPVNCIVYDS----------LL---TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~----------~~---~~~~~~a~~lgiP~v~~~~~~ 134 (459)
.-.+..++.+ .+|||||+.. ++ .+|+.-|...|||.|.+|...
T Consensus 80 -------~~al~~~~~~-----~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 80 -------KLALDGLLPD-----KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp -------HHHHHCTSTT-----SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred -------HHHHHhhhcc-----CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 1122222221 1599999642 33 335666778899999998754
No 141
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.88 E-value=1.1 Score=43.12 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=72.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEecCccccccCC-CCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKR--VKATLATTHYTVKSIHA-TTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
.|||+++-....||+.=..++-+.|+++. .++++++.+.+.+.++. +.++-+..-.. . . ..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~--~----~-~~--------- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDK--K----K-KG--------- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccc--c----c-cc---------
Confidence 38999999999999999999999999975 99999999999988776 34433322110 0 0 00
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEE
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAA 129 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~ 129 (459)
........+.+.++.. ++|+||.=.-..-...++...++|.-.
T Consensus 65 -~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 -LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 1112233444555444 799999776666677777777887655
No 142
>PRK14098 glycogen synthase; Provisional
Probab=95.69 E-value=0.17 Score=51.32 Aligned_cols=131 Identities=14% Similarity=0.051 Sum_probs=75.3
Q ss_pred CcEEEEEeCCcccC-CHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhh---hhcCCCceEEeeecHH---HHhcccCc
Q 012645 269 KSVIYVSFGSMADI-AANQVDEIARGLKASEKPFLWVVKENENKLPVEFV---NSVGETGLVVRWCNQF---EVLAHQAV 341 (459)
Q Consensus 269 ~~~V~vs~Gs~~~~-~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~v~~~~p~~---~lL~~~~~ 341 (459)
+.++++..|..... ..+.+...+..+...+.+++++..+. ....+.+. .+.+++|.+...++.. .+++.+|+
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~-~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi 384 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGD-KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDM 384 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCC-HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCE
Confidence 34666777776542 23333333333333455665554321 11112222 2346788888888764 57877777
Q ss_pred cceeccC---ch-hhHHHhhhcCCeeecccccc--chhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHh
Q 012645 342 GCFITHC---GW-NSILEGLSLGVAVVAVPQFS--DQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 342 ~~~I~HG---G~-gs~~eal~~GvP~li~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 410 (459)
++.-. |. .+.+||+++|+|.|+....+ |...+ ..+.. +-|...+ ..+++.+.++|.+++
T Consensus 385 --~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~-----~~d~~~la~ai~~~l 449 (489)
T PRK14098 385 --LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFH-----DYTPEALVAKLGEAL 449 (489)
T ss_pred --EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeC-----CCCHHHHHHHHHHHH
Confidence 77543 32 36789999999888776432 22111 01124 5566665 567899999999876
No 143
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.56 E-value=0.17 Score=42.97 Aligned_cols=96 Identities=9% Similarity=-0.052 Sum_probs=58.2
Q ss_pred hCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCC
Q 012645 33 SKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSL 112 (459)
Q Consensus 33 ~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~ 112 (459)
++||+|+|++........ +|+..+.+... ........-....++..... -+.+.+.+.+|++.+-.||+||....
T Consensus 1 q~gh~v~fl~~~~~~~~~--~GV~~~~y~~~--~~~~~~~~~~~~~~e~~~~r-g~av~~a~~~L~~~Gf~PDvI~~H~G 75 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PGVRVVRYRPP--RGPTPGTHPYVRDFEAAVLR-GQAVARAARQLRAQGFVPDVIIAHPG 75 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CCcEEEEeCCC--CCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHcCCCCCEEEEcCC
Confidence 589999999965544433 69988888531 11111111111111111111 12344555666666668999999977
Q ss_pred chhHHHHHHHc-CCceEEEccc
Q 012645 113 LTWALDVARQF-GIYGAAMMTN 133 (459)
Q Consensus 113 ~~~~~~~a~~l-giP~v~~~~~ 133 (459)
.-.+..+-+.+ ++|.+.+.-.
T Consensus 76 WGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 76 WGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred cchhhhHHHhCCCCcEEEEEEE
Confidence 66677788888 9999987654
No 144
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.19 Score=50.12 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=87.5
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhh------cCCCceEEeeecHH---HHh
Q 012645 267 PEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVNS------VGETGLVVRWCNQF---EVL 336 (459)
Q Consensus 267 ~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~------~~~~v~v~~~~p~~---~lL 336 (459)
++..+||+||+...+..++.+..=.+.++..+-.++|..+.+. ...-..+++. -.++.++.+-.|.. +=+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 4566999999999999999999988888888888999887743 1111122211 13566666665544 444
Q ss_pred cccCcccee---ccCchhhHHHhhhcCCeeeccccccchhh--HHHH-HHHhhhceEEeeecCCCcccHHHHHHHH
Q 012645 337 AHQAVGCFI---THCGWNSILEGLSLGVAVVAVPQFSDQPT--NAKF-VEEVWEVGVRAKKNRAGIVTGEELNKCV 406 (459)
Q Consensus 337 ~~~~~~~~I---~HGG~gs~~eal~~GvP~li~P~~~DQ~~--na~r-v~~~~G~G~~~~~~~~~~~~~~~l~~~i 406 (459)
..+|+ |. --||..|..|+|+.|||+|..+ ++|+- |+.- +..+ |+-..+-. -.++-++.++
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~a-gi~e~vA~-----s~~dYV~~av 572 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNA-GIPELVAD-----SRADYVEKAV 572 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhc-CCchhhcC-----CHHHHHHHHH
Confidence 45666 65 3699999999999999999876 55553 3333 3444 76666652 3445555555
No 145
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.08 E-value=0.22 Score=37.47 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=51.7
Q ss_pred cCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 012645 347 HCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWR 426 (459)
Q Consensus 347 HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 426 (459)
+|-..-+.|++++|+|+|.-.. . .+...+.-|...... . +.+++.+++..+++|++ ..++-+++-.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~----~~~~~~~~~~~~~~~---~-~~~el~~~i~~ll~~~~--~~~~ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----P----GLREIFEDGEHIITY---N-DPEELAEKIEYLLENPE--ERRRIAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----H----HHHHHcCCCCeEEEE---C-CHHHHHHHHHHHHCCHH--HHHHHHHHHH
Confidence 5556789999999999988764 1 112221334333332 3 89999999999999972 2333333333
Q ss_pred HHHHHHHhcCCCcHHHHHHHH
Q 012645 427 EFAKKAVSAGGSSDKNIDEFV 447 (459)
Q Consensus 427 ~~~~~~~~~~g~s~~~~~~~~ 447 (459)
+.+ .+..+....+++|+
T Consensus 75 ~~v----~~~~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERV----LKRHTWEHRAEQIL 91 (92)
T ss_pred HHH----HHhCCHHHHHHHHH
Confidence 333 33466666666665
No 146
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.06 E-value=0.067 Score=44.57 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecCccccc--cCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcC
Q 012645 23 PLLQFAKRLASKRVKATLATTHYTVKS--IHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDS 100 (459)
Q Consensus 23 p~~~la~~L~~~Gh~V~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (459)
-+..|+++|.++||+|++++....... ....|+.+..++...... ........ ..+..++ ...
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~l-~~~-- 70 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPW----PLRLLRFL--------RRLRRLL-AAR-- 70 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSS----GGGHCCHH--------HHHHHHC-HHC--
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccch----hhhhHHHH--------HHHHHHH-hhh--
Confidence 467899999999999999997655443 233588888776221110 00000111 1223333 112
Q ss_pred CCCccEEEeCCCch-hHHHHHH-HcCCceEEEcc
Q 012645 101 ESPVNCIVYDSLLT-WALDVAR-QFGIYGAAMMT 132 (459)
Q Consensus 101 ~~~~Dlvi~D~~~~-~~~~~a~-~lgiP~v~~~~ 132 (459)
..+||+|.+..... ....+++ ..++|+|....
T Consensus 71 ~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 71 RERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp T---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 23899998776432 2333444 78999998765
No 147
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=94.03 E-value=1 Score=40.96 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=62.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----CCceEEEcCCCCCCCCCCCCCCHHHHH
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----TTVGVEPISDGFDEGGFKQAPSVKAYL 79 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (459)
-+|||||+.---+. |.--+..|+++|.+.| +|+++.+...++-... ..+.+..+...-........+....
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaD-- 78 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVD-- 78 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHH--
Confidence 46799887764433 2345888999998888 7999988876654433 2344443321000000011111111
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCccEEEeCC----------Cc---hhHHHHHHHcCCceEEEcc
Q 012645 80 ESFKTVGSRTLAEVILKYKDSESPVNCIVYDS----------LL---TWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~----------~~---~~~~~~a~~lgiP~v~~~~ 132 (459)
...-.+..++. .+||+||+.. ++ .+|+.-|..+|||.|.+|.
T Consensus 79 -----CV~lal~~~~~------~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 -----CIKVALSHILP------EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred -----HHHHHHHhhcC------CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 11112222222 2789999643 33 3456666788999999985
No 148
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.89 E-value=0.39 Score=40.62 Aligned_cols=100 Identities=13% Similarity=0.005 Sum_probs=51.6
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHH
Q 012645 17 AQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILK 96 (459)
Q Consensus 17 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (459)
..|=-.-+..|+++|+++||+|+++++......... ........... ........... ...+..++++
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~~i~~ 78 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---LVKIFVKIPYP----IRKRFLRSFFF-----MRRLRRLIKK 78 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---EEEE---TT-S----STSS--HHHHH-----HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---ccceeeeeecc----cccccchhHHH-----HHHHHHHHHH
Confidence 556666789999999999999999988755544433 11111100000 00111111111 1344555565
Q ss_pred hhcCCCCccEEEeCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 97 YKDSESPVNCIVYDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 97 ~~~~~~~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
. ++|+|-+.... .+....+.. ++|.+...+..
T Consensus 79 ~-----~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 79 E-----KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp H-----T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred c-----CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 4 89999555433 223333333 99999988765
No 149
>PHA01630 putative group 1 glycosyl transferase
Probab=93.72 E-value=1.1 Score=42.86 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=45.2
Q ss_pred eeecHH---HHhcccCccceec---cCc-hhhHHHhhhcCCeeecccccc--chhh---HHHHHHH-----------hhh
Q 012645 328 RWCNQF---EVLAHQAVGCFIT---HCG-WNSILEGLSLGVAVVAVPQFS--DQPT---NAKFVEE-----------VWE 384 (459)
Q Consensus 328 ~~~p~~---~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~li~P~~~--DQ~~---na~rv~~-----------~~G 384 (459)
.++|+. .+++.+++ +|. ..| ..++.||+++|+|+|+.-..+ |.-. |+.-+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 346655 46877887 652 333 458999999999999976432 3211 1111100 1 2
Q ss_pred ceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 385 VGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 385 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
+|..++ .+.+++.+++.+++.|
T Consensus 273 ~G~~v~------~~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 273 VGYFLD------PDIEDAYQKLLEALAN 294 (331)
T ss_pred cccccC------CCHHHHHHHHHHHHhC
Confidence 343332 3567788888888886
No 150
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=93.50 E-value=7 Score=37.08 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHH-HHh-CCCcEEEEEeCCC-CCCchhhhh-hcCCCceEEeeecHH---HHhcccCccceeccCch----
Q 012645 282 IAANQVDEIARG-LKA-SEKPFLWVVKENE-NKLPVEFVN-SVGETGLVVRWCNQF---EVLAHQAVGCFITHCGW---- 350 (459)
Q Consensus 282 ~~~~~~~~i~~a-~~~-~~~~~v~~~~~~~-~~~~~~~~~-~~~~~v~v~~~~p~~---~lL~~~~~~~~I~HGG~---- 350 (459)
...+++..++.. +.+ .+.+|++...++. ..+.+..+. .+.+++.+.+-+|++ ++|...++ |++-.=.
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc 285 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFC 285 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHH
Confidence 345666665554 443 5567776654432 222222221 256889999999987 57777777 7765432
Q ss_pred hhHHHhhhcCCeeec
Q 012645 351 NSILEGLSLGVAVVA 365 (459)
Q Consensus 351 gs~~eal~~GvP~li 365 (459)
-++.||..+|.|++.
T Consensus 286 ~~ivEAaScGL~VVs 300 (426)
T KOG1111|consen 286 MVIVEAASCGLPVVS 300 (426)
T ss_pred HHHHHHHhCCCEEEE
Confidence 257799999999875
No 151
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.22 E-value=0.18 Score=41.33 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc----cccCCCCceEEEcC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV----KSIHATTVGVEPIS 61 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~----~~~~~~g~~~~~~~ 61 (459)
|++.||++.+.++.+|-.-..-++..|.++|++|++++...-. +.+.+.+.+++.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 6789999999999999999999999999999999999875433 33344566666553
No 152
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.55 E-value=0.91 Score=38.71 Aligned_cols=112 Identities=12% Similarity=0.028 Sum_probs=62.9
Q ss_pred EEcCCCccCHHHHHHHHHHH-Hh-CCCeEEEEecCcccccc-----CCC---CceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 12 VLTYPAQGHINPLLQFAKRL-AS-KRVKATLATTHYTVKSI-----HAT---TVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 12 ~~~~~~~GH~~p~~~la~~L-~~-~Gh~V~~~~~~~~~~~~-----~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
++-.++.||..-++.|.+.+ .+ ..++..+++..+..+.. ++. ...+..+|..... .+........
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v-----~q~~~~~~~~ 76 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREV-----GQSYLTSIFT 76 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEe-----chhhHhhHHH
Confidence 34458899999999999999 33 35666667665544332 111 1134444321111 1111111122
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCch--hHHHHHHHc------CCceEEEccch
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT--WALDVARQF------GIYGAAMMTNS 134 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~--~~~~~a~~l------giP~v~~~~~~ 134 (459)
........+.-+.+. +||+||+..-.. ....+|+.+ |.+.|.+.+..
T Consensus 77 ~l~~~~~~~~il~r~------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 77 TLRAFLQSLRILRRE------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHHHHh------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 222222233333332 899999887654 467788888 99999987643
No 153
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=92.26 E-value=2.2 Score=38.83 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI 50 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~ 50 (459)
||||+.---+. |.--+..|+++|++ +|+|+++.+...++-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 67777764443 33348889999964 6899999988776643
No 154
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=92.23 E-value=0.85 Score=41.73 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=54.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc-ccCCCC-ceEEEcCCCCCCCCCCCCCCHHHHHHHHHHh
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK-SIHATT-VGVEPISDGFDEGGFKQAPSVKAYLESFKTV 85 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~-~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
|||+++.. +|. -..|++.|.++||+|+..+...... .+...| ...+ .. .++
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~-~g-~l~-------------------- 53 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVH-TG-ALD-------------------- 53 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEE-EC-CCC--------------------
Confidence 57777653 332 4678999999999999887765443 333332 2221 10 000
Q ss_pred chHHHHHHHHHhhcCCCCccEEEeCCCchh------HHHHHHHcCCceEEEc
Q 012645 86 GSRTLAEVILKYKDSESPVNCIVYDSLLTW------ALDVARQFGIYGAAMM 131 (459)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~------~~~~a~~lgiP~v~~~ 131 (459)
...+.+++.+- ++|+||--.+.++ +..+|+++|||++++.
T Consensus 54 -~~~l~~~l~~~-----~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 54 -PQELREFLKRH-----SIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -HHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 11233444442 7898774433332 4578999999999974
No 155
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=91.71 E-value=0.85 Score=41.14 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=62.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCC-----CceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHAT-----TVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
||||+.---+ =|.--+..|+++|. .+++|+++.+...++-+... .+....+.. ......+. -
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~----~~~av~GT-------P 67 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDN----GAYAVNGT-------P 67 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEecc----ceEEecCC-------h
Confidence 6777665433 35556788899998 99999999999887755431 222222211 00000011 1
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCC----------Cc---hhHHHHHHHcCCceEEEccch
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDS----------LL---TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~----------~~---~~~~~~a~~lgiP~v~~~~~~ 134 (459)
.+...-.+..++++. .||+||+.. .+ .+|++=|..+|||.|.+|...
T Consensus 68 aDCV~lal~~l~~~~-----~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 68 ADCVILGLNELLKEP-----RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HHHHHHHHHHhccCC-----CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 112222334444332 589998643 22 335555668899999998754
No 156
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=91.67 E-value=2.7 Score=38.18 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIH 51 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~ 51 (459)
||||+.---+. |.--+.+|+++|++ +|+|+++.+...++-..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g 42 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATG 42 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcccc
Confidence 67777765444 34458889999964 68999999987765443
No 157
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.58 E-value=1.6 Score=43.79 Aligned_cols=103 Identities=9% Similarity=0.036 Sum_probs=68.8
Q ss_pred eeecHH---HHhcccCccceec---cCch-hhHHHhhhcCCe----eeccccccchhhHHHHHHHhhhceEEeeecCCCc
Q 012645 328 RWCNQF---EVLAHQAVGCFIT---HCGW-NSILEGLSLGVA----VVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGI 396 (459)
Q Consensus 328 ~~~p~~---~lL~~~~~~~~I~---HGG~-gs~~eal~~GvP----~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 396 (459)
..+|+. ++++.+|+ +|. +=|. .+..||+++|+| +|+--+.+- +. .+ +-|..++ .
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~---~l-~~gllVn-----P 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQ---EL-NGALLVN-----P 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hH---Hh-CCcEEEC-----C
Confidence 455665 45777777 775 4465 478899999999 665554432 11 22 3355555 5
Q ss_pred ccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 012645 397 VTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLL 451 (459)
Q Consensus 397 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~ 451 (459)
.+.+.++++|.++|+.+. ++-+++.+++.+.+.. .+...-+++++++|.
T Consensus 407 ~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 689999999999998642 2556666666666553 677777888887763
No 158
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.51 E-value=2.6 Score=42.98 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=62.4
Q ss_pred CCceEEeeec--HH-HHhcccCccceeccC---chhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCC
Q 012645 322 ETGLVVRWCN--QF-EVLAHQAVGCFITHC---GWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAG 395 (459)
Q Consensus 322 ~~v~v~~~~p--~~-~lL~~~~~~~~I~HG---G~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 395 (459)
.+|.+.++.. +. .++..+.+ +|.=+ |.+|..||+.+|+|+| .......|+.. .=|..+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li------ 472 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII------ 472 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe------
Confidence 5677778777 44 67866666 88765 7789999999999999 22222233333 334333
Q ss_pred cccHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHH
Q 012645 396 IVTGEELNKCVNEVMDGE-RSQKIKRNVSKWREFAK 430 (459)
Q Consensus 396 ~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~l~~~~~ 430 (459)
-+..+|.+++..+|.+. ++..+...+-+.++...
T Consensus 473 -~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 473 -DDISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 25788999999999997 34556666666555544
No 159
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.51 E-value=2.2 Score=40.42 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=34.0
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 8 VHVLVLTY-PAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 8 ~kil~~~~-~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
+||+|++. |+-|-..=..++|-.|++.|.+|.+++++...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 68888887 89999888999999999999988888776433
No 160
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=91.45 E-value=3.2 Score=37.67 Aligned_cols=110 Identities=9% Similarity=-0.000 Sum_probs=60.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----CCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----TTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
||||+.---+ =|.--+..|+++|++.| +|+++.+...++-... ..+.+..++..-........+....
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaD----- 73 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTD----- 73 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHH-----
Confidence 6777655333 23345788999999888 8999999877765544 2444444431000000001111111
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCC----------Cc---hhHHHHHHHcCCceEEEcc
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDS----------LL---TWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~----------~~---~~~~~~a~~lgiP~v~~~~ 132 (459)
...-.+..++. .+|||||+.. ++ .+|+.-|...|||.+.+|.
T Consensus 74 --cv~~gl~~l~~------~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 74 --CVILGINELMP------EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred --HHHHHHHHhcc------CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 11112222322 2689998643 22 3456667788999999985
No 161
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.79 E-value=2.1 Score=33.92 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
||++.+.++..|.....-++..|.++|++|+++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999888754
No 162
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.37 E-value=5.2 Score=37.84 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=66.8
Q ss_pred CCcEEEEEeCCcc---cCCHHH----HHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhhcC--CCceEEe---eecHHH
Q 012645 268 EKSVIYVSFGSMA---DIAANQ----VDEIARGLKASEKPFLWVVKENE-NKLPVEFVNSVG--ETGLVVR---WCNQFE 334 (459)
Q Consensus 268 ~~~~V~vs~Gs~~---~~~~~~----~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~~~--~~v~v~~---~~p~~~ 334 (459)
+++.|-|-.|.-. ..+.+. ...+.+.++.-+..+.+..+... ......+.+... +.+.+.+ .=|+..
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~ 224 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLG 224 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHH
Confidence 3455555555432 244443 33344445555555555555432 111122222222 3333332 227888
Q ss_pred HhcccCccceeccCchhhHHHhhhcCCeeeccccccchhh----HHHHHHHhhhceEEeee
Q 012645 335 VLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPT----NAKFVEEVWEVGVRAKK 391 (459)
Q Consensus 335 lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~----na~rv~~~~G~G~~~~~ 391 (459)
.|+.++. .+||---.+++.||+..|+|+.+++.-. +.. -...+++. |+-..+..
T Consensus 225 ~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 225 FLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred HHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCC
Confidence 8977776 3555555689999999999999999876 322 34455666 66555554
No 163
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.23 E-value=0.99 Score=41.47 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhh--HHHHHHHhhhceEEeeecCCCccc
Q 012645 322 ETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPT--NAKFVEEVWEVGVRAKKNRAGIVT 398 (459)
Q Consensus 322 ~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~--na~rv~~~~G~G~~~~~~~~~~~~ 398 (459)
+|..+. .|-.+.++|.++++ .|--.| ..+-+++-.|||+|.+|-.+-|+. .|.|-.++||+...+-. -.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~ 365 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PE 365 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----Cc
Confidence 454443 66666677766666 443332 233457889999999999998865 67777777777766653 34
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHH
Q 012645 399 GEELNKCVNEVMDGERSQKIKRNVS 423 (459)
Q Consensus 399 ~~~l~~~i~~ll~~~~~~~~~~~a~ 423 (459)
+..-..+.++++.|+ ++-++++
T Consensus 366 aq~a~~~~q~ll~dp---~r~~air 387 (412)
T COG4370 366 AQAAAQAVQELLGDP---QRLTAIR 387 (412)
T ss_pred hhhHHHHHHHHhcCh---HHHHHHH
Confidence 444445555699999 7776666
No 164
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=90.06 E-value=4.8 Score=36.60 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=60.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-----CCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-----TTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
||||+.---+. |.--+..|+++|.+. |+|+++.+...++-... ..+.+..+... .....+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~----~~~v~GTPaD----- 69 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG----FYAVDGTPTD----- 69 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC----eEEECCcHHH-----
Confidence 67777664443 445588899999988 79999999877765433 23444443211 0011111111
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCC----------Cc---hhHHHHHHHcCCceEEEcc
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDS----------LL---TWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~----------~~---~~~~~~a~~lgiP~v~~~~ 132 (459)
...-.+..++. .+||+||+.. ++ .+|+.-|...|||.+.+|.
T Consensus 70 --cV~~gl~~l~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 70 --CVHLALNGLLD------PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred --HHHHHHHhhcc------CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 11112222322 2789999643 33 3355666788999999975
No 165
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.47 E-value=5.7 Score=39.59 Aligned_cols=133 Identities=10% Similarity=0.152 Sum_probs=82.1
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEEeCC-CCCCchhhhhhcCCCceEE-eeec-HH-HHhcccCccce
Q 012645 270 SVIYVSFGSMADIAANQVDEIARGLKA-SEKPFLWVVKEN-ENKLPVEFVNSVGETGLVV-RWCN-QF-EVLAHQAVGCF 344 (459)
Q Consensus 270 ~~V~vs~Gs~~~~~~~~~~~i~~a~~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~v~v~-~~~p-~~-~lL~~~~~~~~ 344 (459)
..+++| +.+.++.+....++ ++..+=+...+. ...+. .+ +.. +|+.+. ++.+ .. +++..+++-+-
T Consensus 284 ~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~-~L-~~y-~nvvly~~~~~~~l~~ly~~~dlyLd 353 (438)
T TIGR02919 284 QALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEMSSKLM-SL-DKY-DNVKLYPNITTQKIQELYQTCDIYLD 353 (438)
T ss_pred cEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcccHHHH-HH-Hhc-CCcEEECCcChHHHHHHHHhccEEEE
Confidence 366665 25666666666666 445555533321 01111 12 223 676666 6677 33 89999999999
Q ss_pred eccCch--hhHHHhhhcCCeeeccccccc-hhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHH
Q 012645 345 ITHCGW--NSILEGLSLGVAVVAVPQFSD-QPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRN 421 (459)
Q Consensus 345 I~HGG~--gs~~eal~~GvP~li~P~~~D-Q~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 421 (459)
|+||.- .++.||+.+|+|++..=...- +..... |.... .-+.+++.++|.++|+++ +.++++
T Consensus 354 in~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~--------g~l~~-----~~~~~~m~~~i~~lL~d~--~~~~~~ 418 (438)
T TIGR02919 354 INHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS--------ENIFE-----HNEVDQLISKLKDLLNDP--NQFREL 418 (438)
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecccCCcccccC--------Cceec-----CCCHHHHHHHHHHHhcCH--HHHHHH
Confidence 999765 699999999999998764321 111111 33333 456899999999999997 134444
Q ss_pred HHHHHH
Q 012645 422 VSKWRE 427 (459)
Q Consensus 422 a~~l~~ 427 (459)
..+-++
T Consensus 419 ~~~q~~ 424 (438)
T TIGR02919 419 LEQQRE 424 (438)
T ss_pred HHHHHH
Confidence 444433
No 166
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.45 E-value=0.62 Score=36.96 Aligned_cols=40 Identities=3% Similarity=-0.013 Sum_probs=28.7
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 8 VHVLVLTYPAQG---HINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 8 ~kil~~~~~~~G---H~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
|||+|+.-|-.+ .-.-.++|+.+.++|||+|.++...+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 788888877444 3456899999999999999999988654
No 167
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.42 E-value=2.7 Score=35.16 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcC
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPIS 61 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~ 61 (459)
.|||.+...|+-|-..-.+.++..|.+.|+.|-=+-++.-.+-=..-|++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 5899999999999999999999999999999876655544433333588888875
No 168
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.15 E-value=1.7 Score=43.85 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=61.6
Q ss_pred eeecHH---HHhcccCccceec---cCchh-hHHHhhhcCCe----eecccccc--chhhHHHHHHHhhhceEEeeecCC
Q 012645 328 RWCNQF---EVLAHQAVGCFIT---HCGWN-SILEGLSLGVA----VVAVPQFS--DQPTNAKFVEEVWEVGVRAKKNRA 394 (459)
Q Consensus 328 ~~~p~~---~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~li~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~ 394 (459)
+++++. ++++.+++ +|. +-|+| ++.||+++|+| +|+.-..+ ++ . .-|..++
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~-~~g~lv~---- 410 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------L-SGALLVN---- 410 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------c-CCCEEEC----
Confidence 566766 45777777 663 45654 77899999999 44432221 22 2 3355555
Q ss_pred CcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 012645 395 GIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRL 450 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l 450 (459)
..+.+.+.++|.++++++. ++-+++.++..+.+.+ .+...-++.++++|
T Consensus 411 -p~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 411 -PYDIDEVADAIHRALTMPL-EERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred -CCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 4678999999999998751 1223333333333332 56667777777665
No 169
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=88.95 E-value=0.37 Score=45.47 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=33.7
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 8 VHVLVLTY-PAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 8 ~kil~~~~-~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
||++|++. |+-|-..-..++|-.++++|++|.+++.+...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 67888886 89999999999999999999999999987643
No 170
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.32 E-value=20 Score=32.64 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=44.4
Q ss_pred HHHHHHhCCCcEEEEEeCCC-CCCchhhhhhcCC-CceEE-----eeecHHHHhcccCccceeccCchhhHHHhhhcCCe
Q 012645 290 IARGLKASEKPFLWVVKENE-NKLPVEFVNSVGE-TGLVV-----RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVA 362 (459)
Q Consensus 290 i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~-~v~v~-----~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP 362 (459)
+.+.+++.|..+++.++... +....-+.+++.. .+.+. +.=|+-+.|+.++- .++|---.|...||++.|+|
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkP 267 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY-IISTADSINMCSEAASTGKP 267 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce-EEEecchhhhhHHHhccCCC
Confidence 44455667777777776553 2211222222221 12221 33489999966654 24455566999999999999
Q ss_pred eecc
Q 012645 363 VVAV 366 (459)
Q Consensus 363 ~li~ 366 (459)
+-++
T Consensus 268 v~~~ 271 (329)
T COG3660 268 VFIL 271 (329)
T ss_pred eEEE
Confidence 9665
No 171
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=88.02 E-value=5 Score=37.43 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=58.3
Q ss_pred CCceEE-eeec---HHHHhcccCccceecc--CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCC
Q 012645 322 ETGLVV-RWCN---QFEVLAHQAVGCFITH--CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAG 395 (459)
Q Consensus 322 ~~v~v~-~~~p---~~~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 395 (459)
+++.+. +++| +..+|+.+|++.|+|+ =|.||++-.++.|||+++-- +-+.|.. +.+. |+-+-.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e~-gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTEQ-GLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHhC-CCeEEecCC---
Confidence 677765 6776 5579999999888886 59999999999999998763 2222222 4555 777655666
Q ss_pred cccHHHHHHHHHHHh
Q 012645 396 IVTGEELNKCVNEVM 410 (459)
Q Consensus 396 ~~~~~~l~~~i~~ll 410 (459)
.++...+.++=+++.
T Consensus 278 ~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 DLDEDIVREAQRQLA 292 (322)
T ss_pred cccHHHHHHHHHHHH
Confidence 788888877654443
No 172
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=87.50 E-value=3.5 Score=32.60 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|+++.+.+..-|-.-..-+|..|.++||+|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 789999999999999999999999999999988554
No 173
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=87.20 E-value=5.1 Score=37.92 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=48.1
Q ss_pred CccCHHHHHHHHHHHHhCCCeE--EEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 012645 17 AQGHINPLLQFAKRLASKRVKA--TLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVI 94 (459)
Q Consensus 17 ~~GH~~p~~~la~~L~~~Gh~V--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (459)
-.|-+-|-+.|.+.|.. +.+| |++|.+++. ..........+.+++
T Consensus 30 ~~g~vGp~~~l~~~l~~-~~eIv~TiiCGDnyf--------------------------------~en~eea~~~i~~mv 76 (349)
T PF07355_consen 30 REGPVGPGLMLEKALKD-DAEIVATIICGDNYF--------------------------------NENKEEALKKILEMV 76 (349)
T ss_pred ccCCCChHHHHHHHhcC-CCEEEEEEEECcchh--------------------------------hhCHHHHHHHHHHHH
Confidence 35667788888888875 4443 445554322 222222334555666
Q ss_pred HHhhcCCCCccEEEeCCCchh----------HHHHHHHcCCceEEEc
Q 012645 95 LKYKDSESPVNCIVYDSLLTW----------ALDVARQFGIYGAAMM 131 (459)
Q Consensus 95 ~~~~~~~~~~Dlvi~D~~~~~----------~~~~a~~lgiP~v~~~ 131 (459)
+++ +||++|+.+.+-+ +..+.++++||.++-.
T Consensus 77 ~~~-----~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 77 KKL-----KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred Hhc-----CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 666 8999999987632 2235568999999743
No 174
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=86.81 E-value=3.4 Score=30.90 Aligned_cols=79 Identities=22% Similarity=0.220 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCC
Q 012645 24 LLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESP 103 (459)
Q Consensus 24 ~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (459)
++.+++.|.+.|+++. + ++...+.+++.|+.+..+-..+..+ . .++++.+... +
T Consensus 2 ~~~~~~~l~~lG~~i~-A-T~gTa~~L~~~Gi~~~~~~~ki~~~------~----------------~~i~~~i~~g--~ 55 (90)
T smart00851 2 LVELAKRLAELGFELV-A-TGGTAKFLREAGLPVKTLHPKVHGG------I----------------LAILDLIKNG--E 55 (90)
T ss_pred HHHHHHHHHHCCCEEE-E-ccHHHHHHHHCCCcceeccCCCCCC------C----------------HHHHHHhcCC--C
Confidence 4689999999999983 4 4446677777888764321111110 0 0233444333 8
Q ss_pred ccEEEeCCC---------chhHHHHHHHcCCceE
Q 012645 104 VNCIVYDSL---------LTWALDVARQFGIYGA 128 (459)
Q Consensus 104 ~Dlvi~D~~---------~~~~~~~a~~lgiP~v 128 (459)
.|+||.-.. ...-..+|...+||++
T Consensus 56 id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 56 IDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred eEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 899987432 1234567888899986
No 175
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=86.62 E-value=0.77 Score=37.15 Aligned_cols=46 Identities=7% Similarity=0.036 Sum_probs=37.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATT 54 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g 54 (459)
|||++...|+.+=+. ...+.++|+++|++|.++.++...+.+....
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 688888888877777 9999999999999999999998777665533
No 176
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=85.24 E-value=2.5 Score=38.56 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=54.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCC---CceEEEcCCCCCCCCCCCCCCHHHHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHAT---TVGVEPISDGFDEGGFKQAPSVKAYLESFKT 84 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (459)
|||+++..-+-| ..||+.|.++|+ |++-+.-++......+ +..... ..+ .+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~--G~l--------g~---------- 54 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRV--GRL--------GD---------- 54 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEE--CCC--------CC----------
Confidence 788888766665 478999999999 6665555444433322 122211 011 01
Q ss_pred hchHHHHHHHHHhhcCCCCccEEE--eCCCch----hHHHHHHHcCCceEEEcc
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIV--YDSLLT----WALDVARQFGIYGAAMMT 132 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi--~D~~~~----~~~~~a~~lgiP~v~~~~ 132 (459)
.+.+.+++++- ++|+|| +++|.. -+..+|+.+|||++++.-
T Consensus 55 --~~~l~~~l~~~-----~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 55 --EEGLAEFLREN-----GIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred --HHHHHHHHHhC-----CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 12333444432 788887 444431 156789999999999854
No 177
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=84.57 E-value=3.4 Score=37.88 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=31.9
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 012645 9 HVLVLT-YPAQGHINPLLQFAKRLASKRVKATLATTHYT 46 (459)
Q Consensus 9 kil~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 46 (459)
|+++++ -|+-|...-...+|..++++|++|.++..+..
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 355555 58999999999999999999999999988653
No 178
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.36 E-value=21 Score=31.39 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=62.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSR 88 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (459)
-|++..+|+-|-.--.-.||++|.+++|+|.-++.++..-..... ++| -.-..+...+...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DE-----slp-----------i~ke~yres~~ks--- 63 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDE-----SLP-----------ILKEVYRESFLKS--- 63 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheeccc-----ccc-----------hHHHHHHHHHHHH---
Confidence 356666799999999999999999999999887765443322110 000 0001122222222
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCchh------HHHHHHHcCCceEEEccchHH
Q 012645 89 TLAEVILKYKDSESPVNCIVYDSLLTW------ALDVARQFGIYGAAMMTNSAS 136 (459)
Q Consensus 89 ~~~~l~~~~~~~~~~~Dlvi~D~~~~~------~~~~a~~lgiP~v~~~~~~~~ 136 (459)
..+-+...+ +--+||+|..-+. -+..|.++..++.++....+.
T Consensus 64 ~~rlldSal-----kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~pl 112 (261)
T COG4088 64 VERLLDSAL-----KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPL 112 (261)
T ss_pred HHHHHHHHh-----cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCH
Confidence 222222222 2349999987654 345778889998888765533
No 179
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.38 E-value=6.4 Score=36.39 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhC-CCcEEEEEeCCC-CCCchhhhhhc---CCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcC
Q 012645 286 QVDEIARGLKAS-EKPFLWVVKENE-NKLPVEFVNSV---GETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLG 360 (459)
Q Consensus 286 ~~~~i~~a~~~~-~~~~v~~~~~~~-~~~~~~~~~~~---~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~G 360 (459)
+.+.+.++.+.. +..++++....+ ......+.+.. ...+.+.+-++-.+|+.+++. |||-.+ ++-.||+.+|
T Consensus 142 ~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~g 218 (269)
T PF05159_consen 142 FLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHG 218 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcC
Confidence 344444455544 566665544322 11111222222 223334466788899988887 888854 4789999999
Q ss_pred Ceeecccc
Q 012645 361 VAVVAVPQ 368 (459)
Q Consensus 361 vP~li~P~ 368 (459)
+|++++..
T Consensus 219 kpVi~~G~ 226 (269)
T PF05159_consen 219 KPVIVFGR 226 (269)
T ss_pred CceEEecC
Confidence 99999873
No 180
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.12 E-value=43 Score=31.84 Aligned_cols=124 Identities=12% Similarity=0.004 Sum_probs=77.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc---cccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY---TVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
.+|.|++++-.|-.||-=++.-=|..|++.|.+|.+++.-. ..+.++.++++++.++.- +... ....-..-.++.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l-~~~~-~~p~~~~l~lKv 87 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNL-PFLQ-GGPRVLFLPLKV 87 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCC-cccC-CCchhhhhHHHH
Confidence 46679999999999999999999999999999999998654 345566789999999732 1110 011111112222
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEe-CCCchhHHHHHH----HcCCceEEEccchHH
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVY-DSLLTWALDVAR----QFGIYGAAMMTNSAS 136 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~-D~~~~~~~~~a~----~lgiP~v~~~~~~~~ 136 (459)
+... ...+..++. + .++|.|+. ++-+.....+|. ..|...++=+++..+
T Consensus 88 f~Qf-l~Ll~aL~~-~----~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 88 FWQF-LSLLWALFV-L----RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred HHHH-HHHHHHHHh-c----cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 2222 122333333 1 37888864 444444444443 458888888876644
No 181
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=82.92 E-value=12 Score=34.19 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=54.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhch
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGS 87 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (459)
++|+++..-+.| ..||+.|.++|++|+..+...+.. ....++..+.= .+ .+ .
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~G--~l--------~~------------~ 54 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADLPGPVRVG--GF--------GG------------A 54 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEEC--CC--------CC------------H
Confidence 568887765555 468999999999988877665544 22223322211 00 01 1
Q ss_pred HHHHHHHHHhhcCCCCccEEE--eCCCch----hHHHHHHHcCCceEEEcc
Q 012645 88 RTLAEVILKYKDSESPVNCIV--YDSLLT----WALDVARQFGIYGAAMMT 132 (459)
Q Consensus 88 ~~~~~l~~~~~~~~~~~Dlvi--~D~~~~----~~~~~a~~lgiP~v~~~~ 132 (459)
+.+.+++.+ . +.++|| +++|.. -+..+|+++|||++++.-
T Consensus 55 ~~l~~~l~~---~--~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLRE---E--GIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHH---C--CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 233344443 2 788877 444432 156789999999999853
No 182
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=82.41 E-value=5.8 Score=40.58 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=51.1
Q ss_pred cHHHHhcccCccceec---cCch-hhHHHhhhcCCeeecccccc-chhhHHHHHHHhhh--ceEEeeecCC--CcccHHH
Q 012645 331 NQFEVLAHQAVGCFIT---HCGW-NSILEGLSLGVAVVAVPQFS-DQPTNAKFVEEVWE--VGVRAKKNRA--GIVTGEE 401 (459)
Q Consensus 331 p~~~lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~li~P~~~-DQ~~na~rv~~~~G--~G~~~~~~~~--~~~~~~~ 401 (459)
++.+++..+++ +|. +=|+ -+++||+++|+|+|.....+ ... +..+... + .|..+..... -..+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhcc-CCCceEEEecCCccchHHHHHH
Confidence 46788877777 666 4565 48999999999999887532 211 1222222 2 4666653311 1245678
Q ss_pred HHHHHHHHhcChhhHHHH
Q 012645 402 LNKCVNEVMDGERSQKIK 419 (459)
Q Consensus 402 l~~~i~~ll~~~~~~~~~ 419 (459)
|.+++.++++.++.+.+.
T Consensus 542 La~~m~~~~~~~~r~~~~ 559 (590)
T cd03793 542 LTQYMYEFCQLSRRQRII 559 (590)
T ss_pred HHHHHHHHhCCcHHHHHH
Confidence 888888888654333333
No 183
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=82.30 E-value=2.1 Score=34.94 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=37.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
++|.||++.+.|..||=...--++++|+..|.+|...+.-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 36899999999999999999999999999999999876543
No 184
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.17 E-value=13 Score=32.75 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc----cccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY----TVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
+.||++.+.++..|-....-++..|.++|++|++++..- ..+.+.+.+.+++-+.--... .
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~-----------~---- 146 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTT-----------T---- 146 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc-----------c----
Confidence 569999999999999999999999999999999887542 223333445556555311110 1
Q ss_pred HHhchHHHHHHHHHhhcCCC--CccEEEeCCCchhHHHHHHHcCCceEE
Q 012645 83 KTVGSRTLAEVILKYKDSES--PVNCIVYDSLLTWALDVARQFGIYGAA 129 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~--~~Dlvi~D~~~~~~~~~a~~lgiP~v~ 129 (459)
...+.++++.+++... ++.+++..... ....++++|.=.+.
T Consensus 147 ----~~~~~~~i~~lr~~~~~~~~~i~vGG~~~--~~~~~~~~GaD~~~ 189 (201)
T cd02070 147 ----MGGMKEVIEALKEAGLRDKVKVMVGGAPV--NQEFADEIGADGYA 189 (201)
T ss_pred ----HHHHHHHHHHHHHCCCCcCCeEEEECCcC--CHHHHHHcCCcEEE
Confidence 1233455555554433 44556666443 34577787765443
No 185
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=81.21 E-value=1.2 Score=33.80 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCC
Q 012645 24 LLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKDSESP 103 (459)
Q Consensus 24 ~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (459)
++++|+.|.+.||++ ++++...+.+++.|+++..+-........ ..+.. ++.+.++.. +
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~Gi~~~~v~~~~~~~~~-~~g~~----------------~i~~~i~~~--~ 60 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEHGIEVTEVVNKIGEGES-PDGRV----------------QIMDLIKNG--K 60 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHTT--EEECCEEHSTG-G-GTHCH----------------HHHHHHHTT--S
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHcCCCceeeeeecccCcc-CCchh----------------HHHHHHHcC--C
Confidence 578999999999765 56666677788889997666422221100 00011 333444333 8
Q ss_pred ccEEEeCCCchh---------HHHHHHHcCCceEE
Q 012645 104 VNCIVYDSLLTW---------ALDVARQFGIYGAA 129 (459)
Q Consensus 104 ~Dlvi~D~~~~~---------~~~~a~~lgiP~v~ 129 (459)
.|+||....... -..+|...+||+++
T Consensus 61 IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 61 IDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp EEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred eEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 999997653321 24578888999863
No 186
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.72 E-value=25 Score=29.51 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=56.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEE---EecCcc---ccccCC-CCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATL---ATTHYT---VKSIHA-TTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~---~~~~~~---~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
|.+++..+.|-....+.+|-+.+.+|++|.| +-.... ...++. +++++.....++.... .+.....
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~----~~~~~~~--- 77 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT----ENDEEDI--- 77 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC----CChHHHH---
Confidence 7788889999999999999999999999999 433211 111222 4788887764432211 1111111
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCch
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLT 114 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~ 114 (459)
......+....+.+.. .++|+||.|....
T Consensus 78 -~~a~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 78 -AAAAEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred -HHHHHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 1112333333333322 3899999998755
No 187
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=80.57 E-value=7.6 Score=33.88 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecCccccc-cCC----CCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 012645 20 HINPLLQFAKRLASKRVKATLATTHYTVKS-IHA----TTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVI 94 (459)
Q Consensus 20 H~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (459)
++.-.+.+.+.+.++|-+|.|+++...... ++. .|-.|+.- .+-.+..............+.......+...+
T Consensus 41 ~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~--rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~ 118 (193)
T cd01425 41 KLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNG--RWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNL 118 (193)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecC--eecCCcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566777778999999999854332 222 23333221 12222211112222222222222112233333
Q ss_pred HHhhcCCCCccEEE-eCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 95 LKYKDSESPVNCIV-YDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 95 ~~~~~~~~~~Dlvi-~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
..+......||+|| .|+.. ..+..=|.++|||.|.+....
T Consensus 119 ~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 119 GGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 33333335899997 55433 346677889999999987543
No 188
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=80.09 E-value=15 Score=36.50 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=52.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSR 88 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (459)
|+.++..+.. .+.+++.|.+-|-+|..+++........+.-... +. .+...... ..
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~--~~-~~~~~v~~-~~--------------- 342 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRW--LE-MLGVEVKY-RA--------------- 342 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHH--HH-hcCCCcee-cc---------------
Confidence 6677666555 8899999999999999887663211111000000 00 00000000 00
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 89 TLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 89 ~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
.+.+..+.+.+. +||++|... ....+|+++|||.+.+.
T Consensus 343 dl~~~~~~l~~~--~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 343 SLEDDMEAVLEF--EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CHHHHHHHHhhC--CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 111111222222 899999983 36678999999999975
No 189
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=79.73 E-value=31 Score=31.69 Aligned_cols=108 Identities=10% Similarity=0.079 Sum_probs=57.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC---CCeEEEEecCccccccCC-----CCceEEEcCCCCCCCCCCCCCCHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK---RVKATLATTHYTVKSIHA-----TTVGVEPISDGFDEGGFKQAPSVKAYL 79 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~---Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (459)
||||+.---+. |.--+.+|+++|.+. |++|+++.+...++-... ..+....+.+. ..........
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~----~yav~GTPaD-- 73 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR----RFAAEGSPAD-- 73 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC----eEEEcCchHH--
Confidence 56665543222 334466777877663 479999999877654433 23444444311 0111122111
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCccEEEeC----------CCch---hHHHHHHHcCCceEEEcc
Q 012645 80 ESFKTVGSRTLAEVILKYKDSESPVNCIVYD----------SLLT---WALDVARQFGIYGAAMMT 132 (459)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D----------~~~~---~~~~~a~~lgiP~v~~~~ 132 (459)
...-.+..++. ..+||+||+. .++. +|+.-|...|||.+.+|.
T Consensus 74 -----CV~lal~~~~~-----~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 74 -----CVLAALYDVMK-----DAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred -----HHHHHHHHhcC-----CCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 11112222322 1279999963 3333 355666688999999985
No 190
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=79.49 E-value=3.6 Score=29.98 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=31.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLAT 42 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~ 42 (459)
.-++++..|...|...+-.+|+.|.++|+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 56888999999999999999999999999988653
No 191
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=79.15 E-value=7.3 Score=42.14 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=65.6
Q ss_pred HHhcccCccceec---cCchh-hHHHhhhcCCe---eeccc-cccchhhHHHHHHHhhh-ceEEeeecCCCcccHHHHHH
Q 012645 334 EVLAHQAVGCFIT---HCGWN-SILEGLSLGVA---VVAVP-QFSDQPTNAKFVEEVWE-VGVRAKKNRAGIVTGEELNK 404 (459)
Q Consensus 334 ~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP---~li~P-~~~DQ~~na~rv~~~~G-~G~~~~~~~~~~~~~~~l~~ 404 (459)
++++.+++ ||. .-|.| +..|++++|+| +++++ +.+ .+. .+ | -|..++ -.+.+.+++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~---~l-~~~allVn-----P~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ---SL-GAGALLVN-----PWNITEVSS 435 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh---hh-cCCeEEEC-----CCCHHHHHH
Confidence 67777777 774 44776 67799999999 44444 322 111 13 4 355665 578999999
Q ss_pred HHHHHhc-ChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012645 405 CVNEVMD-GERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKAD 454 (459)
Q Consensus 405 ~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~~ 454 (459)
+|.++|+ ++ ++-+++.+++.+.+.. .+...-++.+++++.+..
T Consensus 436 AI~~aL~m~~--~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 436 AIKEALNMSD--EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHhCCH--HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 9999999 43 1445556666666554 566677888888876543
No 192
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=78.88 E-value=10 Score=33.58 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=31.4
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTY--PAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+|+++|. |+-|-..-...|+.+|+++|++|.++=.+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 5777776 48899999999999999999999998665
No 193
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=78.61 E-value=9.2 Score=30.12 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=58.2
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHH
Q 012645 11 LVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTL 90 (459)
Q Consensus 11 l~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (459)
+|++.... +=.-++.+|+.|.+.|++|. +++...+.+.+.|+.+..+......+ ... .+.+
T Consensus 3 vlisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~gi~~~~v~~~~~~~---~~~-------------~~~i 63 (116)
T cd01423 3 ILISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFLLENGIPVTPVAWPSEEP---QND-------------KPSL 63 (116)
T ss_pred EEEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHcCCCceEeeeccCCC---CCC-------------chhH
Confidence 34444443 55668899999999999983 55666677777788776653211100 000 0223
Q ss_pred HHHHHHhhcCCCCccEEEeCCC---------chhHHHHHHHcCCceEE
Q 012645 91 AEVILKYKDSESPVNCIVYDSL---------LTWALDVARQFGIYGAA 129 (459)
Q Consensus 91 ~~l~~~~~~~~~~~Dlvi~D~~---------~~~~~~~a~~lgiP~v~ 129 (459)
.+++++ .++|+||.-+. .+.-...|-.+|||+++
T Consensus 64 ~~~i~~-----~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 64 RELLAE-----GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHHHc-----CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 334443 28899997432 23356678899999974
No 194
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=78.24 E-value=4.8 Score=36.26 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPL------------LQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~~ 44 (459)
||||+.+.|+.=.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 57777777776666552 46889999999999998754
No 195
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=78.17 E-value=2.6 Score=36.47 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEecCccccccCCCCceEEEc
Q 012645 6 ERVHVLVLTYPAQGHINPL------------LQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPI 60 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~ 60 (459)
+.+|||+.+.|+.=.+.|. ..||+++..+|++|+++..+.... ..+++..+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--~p~~~~~i~v 66 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP--PPPGVKVIRV 66 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS------TTEEEEE-
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc--ccccceEEEe
Confidence 3567888887777777663 689999999999999999984222 1336666655
No 196
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=78.11 E-value=24 Score=33.56 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=62.5
Q ss_pred CCceEE-eeecHH---HHhcccCccceecc--CchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCC
Q 012645 322 ETGLVV-RWCNQF---EVLAHQAVGCFITH--CGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAG 395 (459)
Q Consensus 322 ~~v~v~-~~~p~~---~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 395 (459)
+++.+. +++|.+ ++|+.++++.|.|. =|.|+++-.|+.|+|+++-- +.---.-+.+. |+=+....+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l~~~-~ipVlf~~d--- 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDLKEQ-GIPVLFYGD--- 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHHHhC-CCeEEeccc---
Confidence 577654 788754 79999999877774 59999999999999997643 33334456777 777666656
Q ss_pred cccHHHHHHHHHHHhc
Q 012645 396 IVTGEELNKCVNEVMD 411 (459)
Q Consensus 396 ~~~~~~l~~~i~~ll~ 411 (459)
.++.+.|.++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8999999999887765
No 197
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=77.48 E-value=33 Score=29.27 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---ecC---ccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLA---TTH---YTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~---~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
-|.+++..+.|-..-.+.+|-+.+.+|++|.++ -.. .....++..++++.....++.... .+.....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~----~~~~~~~--- 79 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWET----QNREADT--- 79 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecC----CCcHHHH---
Confidence 378888899999999999999999999999654 332 111223334788888765543221 1111111
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCch
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLT 114 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~ 114 (459)
......+....+.+.. .++|+||.|....
T Consensus 80 -~~~~~~~~~a~~~l~~--~~~DlvVLDEi~~ 108 (173)
T TIGR00708 80 -AIAKAAWQHAKEMLAD--PELDLVLLDELTY 108 (173)
T ss_pred -HHHHHHHHHHHHHHhc--CCCCEEEehhhHH
Confidence 1123334444444432 3899999998654
No 198
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=77.36 E-value=18 Score=36.17 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.4
Q ss_pred CccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 103 PVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 103 ~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
+||++|.... ...+|+++|+|++.+.
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 8999999853 6788999999999875
No 199
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=76.35 E-value=23 Score=32.11 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=29.5
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTY--PAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
||++.+.. |+-|-..=...||..|++.|++|..+=-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 45544443 7999999999999999999999988854
No 200
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.19 E-value=3.3 Score=36.08 Aligned_cols=45 Identities=4% Similarity=-0.052 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI 50 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~ 50 (459)
+.+||++.-.|+.|=+.-...+++.|+++||+|.++.++.-.+.+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 457888877776665555799999999999999999988766543
No 201
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=76.06 E-value=14 Score=36.62 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=51.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCC-CCCCCCCCCCCCHHHHHHHHHHhch
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISD-GFDEGGFKQAPSVKAYLESFKTVGS 87 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (459)
|++++..+.. .+.+++.|.+.|-+|..+++........++-... ++. +... ....++...
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~--l~~~~~~v---~~~~~~~~~--------- 342 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEW--LSALGVEV---RYRKSLEDD--------- 342 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHH--HHhcCCcc---ccCCCHHHH---------
Confidence 6655544433 6669999999999999998873221111100000 000 0000 000111100
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEcc
Q 012645 88 RTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 88 ~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~ 132 (459)
...+++. +||++|.. ..+..+|+++|||.+.+..
T Consensus 343 ---~~~~~~~-----~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 343 ---IAAVEEY-----RPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred ---HHHHhhc-----CCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 1222332 89999988 3477899999999999753
No 202
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=75.98 E-value=2.9 Score=40.67 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCCceEE-eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCC--Ccc
Q 012645 321 GETGLVV-RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRA--GIV 397 (459)
Q Consensus 321 ~~~v~v~-~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~--~~~ 397 (459)
.++++.+ +..+..++|..+++ +||=- .+.+.|.+..++|+|......|..... . |.-........ --.
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeC
Confidence 4566665 34457799988888 99987 568899999999999888777766332 2 33322211101 135
Q ss_pred cHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 012645 398 TGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNI 443 (459)
Q Consensus 398 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~ 443 (459)
+.++|.++|..+++++ +.++++.+++.+++-+ ..+|.++++.+
T Consensus 322 ~~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~ 364 (369)
T PF04464_consen 322 NFEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIV 364 (369)
T ss_dssp SHHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHH
T ss_pred CHHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHH
Confidence 6799999999988765 2566777777777754 23444333333
No 203
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=75.93 E-value=4.1 Score=38.68 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEE
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEP 59 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~ 59 (459)
|.+|||+++..|+.|= .+|..|++.||+|++++... .+.+...|+.+..
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~ 51 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDS 51 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEe
Confidence 4579999998888874 46788999999999998765 3445556776654
No 204
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=75.57 E-value=12 Score=29.24 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhc
Q 012645 20 HINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYKD 99 (459)
Q Consensus 20 H~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (459)
+=.-++++|+.|.+.||++. +++.....+++.|+.+..+-.. ..+ -.+.+.++++ +
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~Gi~~~~v~~~-~~~------------------g~~~i~~~i~---~ 65 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADAGIPVRAVSKR-HED------------------GEPTVDAAIA---E 65 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHcCCceEEEEec-CCC------------------CCcHHHHHHh---C
Confidence 44668899999999999983 5555677777788887776321 110 0122222332 2
Q ss_pred CCCCccEEEe--CCC--------chhHHHHHHHcCCceEEE
Q 012645 100 SESPVNCIVY--DSL--------LTWALDVARQFGIYGAAM 130 (459)
Q Consensus 100 ~~~~~Dlvi~--D~~--------~~~~~~~a~~lgiP~v~~ 130 (459)
..+.|+||. |.. .+.-..+|-..+||+++-
T Consensus 66 -~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 66 -KGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred -CCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 028899986 322 122456788999999884
No 205
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=75.56 E-value=20 Score=32.24 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=23.9
Q ss_pred CccEEE-eCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 103 PVNCIV-YDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 103 ~~Dlvi-~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
-||+++ .|+.. --|..=|.++|||+|.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 489885 67655 336777889999999987543
No 206
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=75.36 E-value=48 Score=28.77 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc------cccccCC-CCceEEEcCCCCCCCCCCCCCCHHHH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY------TVKSIHA-TTVGVEPISDGFDEGGFKQAPSVKAY 78 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~------~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (459)
++=.|.+++..+.|-....+.+|-+.+.+|++|.++=.-. ....++. +++++.....++.... .+...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~----~~~~e- 95 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET----QDRER- 95 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC----CCcHH-
Confidence 3447899999999999999999999999999998874321 1122333 4788888765433211 11111
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCch
Q 012645 79 LESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT 114 (459)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~ 114 (459)
........+....+.+.. .++|+||.|....
T Consensus 96 ---~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 96 ---DIAAAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred ---HHHHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 112223334444444432 3899999998755
No 207
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=74.89 E-value=70 Score=29.52 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=52.5
Q ss_pred CCceEEeeecH---HHHhcccCccceecc---Cchhh-HHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCC
Q 012645 322 ETGLVVRWCNQ---FEVLAHQAVGCFITH---CGWNS-ILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRA 394 (459)
Q Consensus 322 ~~v~v~~~~p~---~~lL~~~~~~~~I~H---GG~gs-~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 394 (459)
+++.+.+++|. ..+++.+++ +++- .|.|. +.||+++|+|+|.... ......+... +.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecC---
Confidence 67778888882 246655666 6666 35544 5999999999966553 2222233333 3465 332
Q ss_pred CcccHHHHHHHHHHHhcCh
Q 012645 395 GIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 395 ~~~~~~~l~~~i~~ll~~~ 413 (459)
..+.+.+.+++..++++.
T Consensus 326 -~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 326 -PGDVEELADALEQLLEDP 343 (381)
T ss_pred -CCCHHHHHHHHHHHhcCH
Confidence 236899999999999886
No 208
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=74.59 E-value=17 Score=31.28 Aligned_cols=104 Identities=8% Similarity=-0.005 Sum_probs=54.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEecCccccc----cCCCCceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVK--ATLATTHYTVKS----IHATTVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~--V~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
|||+|+..|+. .-+..+.++|.+++|+ +..+.+...... ....++....+...- + .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~ 62 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKN--------------F-Q 62 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGG--------------S-S
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEeccccC--------------C-C
Confidence 79999976665 4466667899999997 555444322221 111344333332100 0 0
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
......+.+.+.++++ +||++|+-.+. .....+.+.....++-+.++.
T Consensus 63 ~~~~~~~~~~~~l~~~-----~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpsl 111 (181)
T PF00551_consen 63 PRSENDEELLELLESL-----NPDLIVVAGYGRILPKEFLSIPPYGIINIHPSL 111 (181)
T ss_dssp SHHHHHHHHHHHHHHT-----T-SEEEESS-SS---HHHHHHSTTSEEEEESSS
T ss_pred chHhhhhHHHHHHHhh-----ccceeehhhhHHHhhhhhhhcccccEEEEeecC
Confidence 0011123344555554 89999877554 334555577777777776644
No 209
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=74.56 E-value=9.1 Score=36.15 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.0
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 13 LTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 13 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
++.|+.|-.--.+.||++|+++|..+-+++-.+..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 35689999999999999999999999999977655
No 210
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=74.44 E-value=20 Score=35.83 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhc
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVG 86 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (459)
..|+.+...+ .....+++.|.+.|-+|..+......+..+. ++.+ .. ...+.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-------~~~~----~~-~~~D~----------- 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-------LPVE----TV-VIGDL----------- 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-------CCcC----cE-EeCCH-----------
Confidence 4677766533 4778999999999999988877654332211 1100 00 00111
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 87 SRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
..+.+++++. ++|+||.+.. ...+|+++|||++.+.
T Consensus 363 -~~l~~~i~~~-----~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 -EDLEDLACAA-----GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred -HHHHHHHhhc-----CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 1223344443 7999999853 6789999999999875
No 211
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=73.90 E-value=17 Score=28.29 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=55.8
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhh
Q 012645 19 GHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYK 98 (459)
Q Consensus 19 GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (459)
.+-.-++++++.|.+.|+++. +++...+.+++.|+.+..+.... . ....+.+++++
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~gi~~~~v~~~~-~-------------------~~~~i~~~i~~-- 65 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEAGIPVEVVNKVS-E-------------------GRPNIVDLIKN-- 65 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHcCCeEEEEeecC-C-------------------CchhHHHHHHc--
Confidence 356678999999999999984 45556777777888876663210 0 11223333332
Q ss_pred cCCCCccEEEeCCC-------chhHHHHHHHcCCceEE
Q 012645 99 DSESPVNCIVYDSL-------LTWALDVARQFGIYGAA 129 (459)
Q Consensus 99 ~~~~~~Dlvi~D~~-------~~~~~~~a~~lgiP~v~ 129 (459)
. ++|+||.-.- .+.-...|-.+|||++.
T Consensus 66 -~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 66 -G--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -C--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 2 8899997431 24466788899999996
No 212
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=73.85 E-value=7.5 Score=33.34 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=60.1
Q ss_pred cCHHHHHHHHHHH-HhCCCeEEEEecCccccccCCCCceEEEcCCC----------CCCCC--------CCCCCCHHHHH
Q 012645 19 GHINPLLQFAKRL-ASKRVKATLATTHYTVKSIHATTVGVEPISDG----------FDEGG--------FKQAPSVKAYL 79 (459)
Q Consensus 19 GH~~p~~~la~~L-~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~--------~~~~~~~~~~~ 79 (459)
+.+.-.+..|+.| .+.|.+|.+.-+....-.-+..++..+.++.. ..... .....+...+.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~ 96 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIE 96 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHH
Confidence 5677889999999 88999998887663332222235555555400 00000 00111222222
Q ss_pred HHHHH-------hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccch
Q 012645 80 ESFKT-------VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 80 ~~~~~-------~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~ 134 (459)
..+.- .....+...++++... +.|+||.+. .+..+|+++|+|++.+.+..
T Consensus 97 ~ll~~~i~~~~~~~~~e~~~~i~~~~~~--G~~viVGg~---~~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 97 ELLGVDIKIYPYDSEEEIEAAIKQAKAE--GVDVIVGGG---VVCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHT-EEEEEEESSHHHHHHHHHHHHHT--T--EEEESH---HHHHHHHHTTSEEEESS--H
T ss_pred HHhCCceEEEEECCHHHHHHHHHHHHHc--CCcEEECCH---HHHHHHHHcCCcEEEEEecH
Confidence 21111 1144667777777666 899999995 36789999999999987754
No 213
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.59 E-value=5.2 Score=36.84 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=37.9
Q ss_pred cCccceeccCchhhHHHhhh------cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 339 QAVGCFITHCGWNSILEGLS------LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 339 ~~~~~~I~HGG~gs~~eal~------~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
+++ +|+-||=||++.|+. .++|++.+-. |...-.. +.+++++.+.+.+++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-----------------G~lGFL~---~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT-----------------GHLGFYT---DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC-----------------CCceecc---cCCHHHHHHHHHHHHcC
Confidence 566 999999999999986 4889887752 3222222 46677788888888775
No 214
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=73.25 E-value=18 Score=33.10 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK 48 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 48 (459)
...++|+..++.|-..=..+||.+|.++|+.|+|++.++...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 457888888899998889999999999999999999886654
No 215
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=72.82 E-value=18 Score=33.12 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIH 51 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~ 51 (459)
||||+.---+. |.--+..|+++|...| +|+++.+...++-..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g 42 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATG 42 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcccc
Confidence 67777665444 4566889999998887 899998887665443
No 216
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.53 E-value=25 Score=31.52 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCchh---HHHHHHHcCCceEEEc
Q 012645 87 SRTLAEVILKYKDSESPVNCIVYDSLLTW---ALDVARQFGIYGAAMM 131 (459)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~---~~~~a~~lgiP~v~~~ 131 (459)
...+..+++.+. +-++.+.|..+.+ +..+|.+.|||++.=.
T Consensus 137 ~~aM~~~m~~Lk----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~rd 180 (250)
T COG2861 137 EDAMEKLMEALK----ERGLYFLDSGTIANSLAGKIAKEIGVPVIKRD 180 (250)
T ss_pred HHHHHHHHHHHH----HCCeEEEcccccccchhhhhHhhcCCceeeee
Confidence 455666777775 5589999988754 6778999999998843
No 217
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.31 E-value=6.5 Score=31.35 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc----cccCCCCceEEEc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV----KSIHATTVGVEPI 60 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~----~~~~~~g~~~~~~ 60 (459)
||++.+.++..|-....-++..|+..|++|++.+...-. +.+.+.+.+++-+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~i 56 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGL 56 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 689999999999999999999999999999999875322 2233345555555
No 218
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.21 E-value=7.4 Score=35.25 Aligned_cols=96 Identities=14% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCcEEEEEeCCccc---CCHHHHHHHHHHHHhCCCcEEEEEeCCCC--CCchhhhhhcCCCceEE-e--eecHH-HHhcc
Q 012645 268 EKSVIYVSFGSMAD---IAANQVDEIARGLKASEKPFLWVVKENEN--KLPVEFVNSVGETGLVV-R--WCNQF-EVLAH 338 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~---~~~~~~~~i~~a~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~v~v~-~--~~p~~-~lL~~ 338 (459)
+++.|.+..|+... .+.+.+.++++.+.+.++.+++..+..+. ..-+.+.+..+.++... + -+.+. .++++
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 45688888888653 67888999999998888666655433210 00001111122222222 2 23333 78877
Q ss_pred cCccceeccCchhhHHHhhhcCCeeecc
Q 012645 339 QAVGCFITHCGWNSILEGLSLGVAVVAV 366 (459)
Q Consensus 339 ~~~~~~I~HGG~gs~~eal~~GvP~li~ 366 (459)
+++ +|+. -.|.++=|.+.|+|+|.+
T Consensus 184 a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 184 ADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp SSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred CCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 777 8887 568888999999999988
No 219
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.29 E-value=34 Score=34.05 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.6
Q ss_pred CccEEEeCCCchhHHHHHHHcCCceEEEcc
Q 012645 103 PVNCIVYDSLLTWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 103 ~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~ 132 (459)
+||+||.+.. ...+|+++|+|++.++.
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRVGF 397 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEecC
Confidence 8999999964 56888999999998653
No 220
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=69.64 E-value=21 Score=30.10 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 15 YPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 15 ~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
-|+-|-..-.+.||..|+++|++|.++=.+.
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3789999999999999999999999986553
No 221
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=69.32 E-value=13 Score=37.08 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
.||||++..|++-| +|+++|++.++-..+++.+.
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pg 37 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPG 37 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECC
Confidence 59999999998877 68999999885544444443
No 222
>PRK05973 replicative DNA helicase; Provisional
Probab=69.12 E-value=23 Score=31.97 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
=+++..-|+.|-..=.+.++...+++|+.|.|++.+...+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~ 106 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQD 106 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Confidence 36677778999999999999988889999999998866543
No 223
>PRK10867 signal recognition particle protein; Provisional
Probab=68.46 E-value=32 Score=34.19 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=40.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEecCcccccc--------CCCCceEEEc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASK-RVKATLATTHYTVKSI--------HATTVGVEPI 60 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~~~~~~~--------~~~g~~~~~~ 60 (459)
-|+|+..++-|-..-...||..|+++ |+.|.+++.+.++... +..|+.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec
Confidence 45666667999999999999999998 9999999998776532 3357766654
No 224
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=68.38 E-value=14 Score=31.15 Aligned_cols=105 Identities=24% Similarity=0.231 Sum_probs=58.2
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhC-CCeEEEEecCc---cccc----cCCCCce-EEEcCCCCCCCCCCCCCCHH
Q 012645 10 VLVLTYPAQGHINP----LLQFAKRLASK-RVKATLATTHY---TVKS----IHATTVG-VEPISDGFDEGGFKQAPSVK 76 (459)
Q Consensus 10 il~~~~~~~GH~~p----~~~la~~L~~~-Gh~V~~~~~~~---~~~~----~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 76 (459)
|+++.-...|.++| .+..|++|++. |.+|+.++... ..+. +...|++ .+.+++.--. ..+..
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~-----~~~~~ 76 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALA-----EYDPE 76 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGT-----TC-HH
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCcccc-----ccCHH
Confidence 45555444666666 68889999874 78887776653 2222 2335764 3444311000 00111
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchh---HHHHHHHcCCceEEEcc
Q 012645 77 AYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTW---ALDVARQFGIYGAAMMT 132 (459)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~---~~~~a~~lgiP~v~~~~ 132 (459)
.+ ...+.+++++. +||+|+....... +..+|.+||.|++.-..
T Consensus 77 ~~--------a~~l~~~~~~~-----~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 77 AY--------ADALAELIKEE-----GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HH--------HHHHHHHHHHH-----T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HH--------HHHHHHHHHhc-----CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 11 23445555554 8999998765543 77899999999998654
No 225
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=67.82 E-value=1.2e+02 Score=29.44 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=36.7
Q ss_pred eeccCchhhHHHhhhcCCeeecccc---ccch------hhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcCh
Q 012645 344 FITHCGWNSILEGLSLGVAVVAVPQ---FSDQ------PTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGE 413 (459)
Q Consensus 344 ~I~HGG~gs~~eal~~GvP~li~P~---~~DQ------~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 413 (459)
+-|+ |..++..|+.+|.|+ ..|. .+|- -.|+.++.+- -+=.++ ..+.+++..+|.++++|.
T Consensus 248 VEt~-~a~~f~~sl~~g~~V-~lp~i~s~AdglaV~~Vg~~tf~~a~~-~~d~vv------vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPV-TLPKITSLADGLAVKTVGENTFELAQK-LVDRVV------VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCee-ecccccchhcccccchhhHHHHHHHHh-cCceEE------EeccHHHHHHHHHHHHhh
Confidence 3444 456788888888887 3332 2332 2345554444 222222 467788999999998875
No 226
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=67.54 E-value=5.7 Score=35.47 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=33.7
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 10 VLVLTY-PAQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 10 il~~~~-~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
|.|++. |+-|-.--.+.||.+|+++|-.|+++=.+.++..
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 344444 8999999999999999999999999988877654
No 227
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=67.51 E-value=13 Score=37.34 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=41.8
Q ss_pred CCCcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEecCccccccCCCCceEEEc
Q 012645 5 RERVHVLVLTYPAQGHINPL------------LQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPI 60 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~ 60 (459)
.+.+|||+...|+.=.+.|. ..||+++..+|++|++++.+.... ...|++++.+
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~--~p~~v~~i~V 319 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA--DPQGVKVIHV 319 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC--CCCCceEEEe
Confidence 45689999999999988885 589999999999999999875321 2245666654
No 228
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=67.37 E-value=8.4 Score=36.07 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=37.9
Q ss_pred ccCccceeccCchhhHHHhhhc----CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 338 HQAVGCFITHCGWNSILEGLSL----GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 338 ~~~~~~~I~HGG~gs~~eal~~----GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.+++ +|+-||-||+++++.. ++|++.+- +|...-.. ..+.+++.++|.+++++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn-----------------~G~lGFL~---~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN-----------------HGRLGFIT---DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc-----------------CCCccccc---cCCHHHHHHHHHHHHcC
Confidence 4566 9999999999999774 67877664 22222222 56778888888888766
No 229
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.16 E-value=7.8 Score=36.16 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=38.9
Q ss_pred HhcccCccceeccCchhhHHHhhh----cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHh
Q 012645 335 VLAHQAVGCFITHCGWNSILEGLS----LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 335 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 410 (459)
+...+++ +|+-||-||++.++. .++|++.+- +|...-.. ..+.+++.+++.+++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFLt---~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIH-----------------AGHLGFLT---DITVDEAEKFFQAFF 118 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEe-----------------CCCcccCC---cCCHHHHHHHHHHHH
Confidence 3334566 999999999998866 377887764 23222222 567788888888888
Q ss_pred cC
Q 012645 411 DG 412 (459)
Q Consensus 411 ~~ 412 (459)
++
T Consensus 119 ~g 120 (287)
T PRK14077 119 QG 120 (287)
T ss_pred cC
Confidence 75
No 230
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=67.03 E-value=35 Score=32.33 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 789999766544 56668888899998876653
No 231
>PRK08506 replicative DNA helicase; Provisional
Probab=66.49 E-value=34 Score=34.57 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=34.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
=+++...|+.|-..=.+.+|...++.|+.|.|++.+.....
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~q 234 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQ 234 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHH
Confidence 36777789999999999999998889999999998865543
No 232
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=66.32 E-value=9.9 Score=30.89 Aligned_cols=54 Identities=7% Similarity=-0.052 Sum_probs=43.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc----cccCCCCceEEEcC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV----KSIHATTVGVEPIS 61 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~----~~~~~~g~~~~~~~ 61 (459)
.+|++.+.++.+|-.----++..|.+.|++|+.++..... +.+.+.+.+++-+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 5899999999999999999999999999999999875443 33344566676663
No 233
>PRK09620 hypothetical protein; Provisional
Probab=66.19 E-value=9.5 Score=34.31 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEecC
Q 012645 6 ERVHVLVLTYPAQGHINPL------------LQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~~ 44 (459)
+.+|||+.+.|+.=.+.|. ..||++|.++||+|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4578888877765554442 56899999999999999765
No 234
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=65.89 E-value=31 Score=33.86 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc--------CCCCceEEEc
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI--------HATTVGVEPI 60 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~--------~~~g~~~~~~ 60 (459)
+..|+++..=+.|-..-+--||+.|+.+|+.|.+++.+-++.-+ ++.++.|...
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 45677777789999999999999999999999999998777543 2247777755
No 235
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=65.76 E-value=10 Score=32.87 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=49.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecC-ccccccCC---CCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTH-YTVKSIHA---TTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~-~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
++-+=..+-|-+.-..+|+++|.++ |+.|.+-++. ...+.+.+ ..+....+|-+.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~------------------- 83 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDF------------------- 83 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SS-------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccC-------------------
Confidence 4444457899999999999999987 8998888763 23332322 133333343111
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCchh--HHHHHHHcCCceEEEcc
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLLTW--ALDVARQFGIYGAAMMT 132 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~--~~~~a~~lgiP~v~~~~ 132 (459)
...++..++.+ +||++|.-....| -...|++.|||.+.+..
T Consensus 84 ---~~~~~rfl~~~-----~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 ---PWAVRRFLDHW-----RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ---HHHHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ---HHHHHHHHHHh-----CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12345666777 7899886555555 34567788999999864
No 236
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=65.71 E-value=89 Score=27.01 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.0
Q ss_pred ccCHHHHH-HHHHHHHhCCCeEEEEecCccccccCC--CCceEEEcC
Q 012645 18 QGHINPLL-QFAKRLASKRVKATLATTHYTVKSIHA--TTVGVEPIS 61 (459)
Q Consensus 18 ~GH~~p~~-~la~~L~~~Gh~V~~~~~~~~~~~~~~--~g~~~~~~~ 61 (459)
+|=+.-++ .|+..|+++||+|++.+.....+.-.. .|++...+|
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 55555543 577888889999999988765533333 488888886
No 237
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=65.27 E-value=7.6 Score=33.27 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=25.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
|||.++. +.|++.- .|+++...|||+||.++-...+
T Consensus 1 mKIaiIg--AsG~~Gs--~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKAGS--RILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchhHH--HHHHHHHhCCCeeEEEEeChHh
Confidence 6776553 4444443 5788899999999999876544
No 238
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=65.15 E-value=12 Score=32.75 Aligned_cols=99 Identities=12% Similarity=-0.034 Sum_probs=63.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc----ccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT----VKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
+-||++.|.++..|-....-++..|.++|++|++++..-- .+.+.+.+.+++-+.--+.. .
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~-------~-------- 148 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTT-------T-------- 148 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcccccc-------C--------
Confidence 4689999999999999999999999999999999987543 33344456666655311111 1
Q ss_pred HHhchHHHHHHHHHhhcCCC--CccEEEeCCCchhHHHHHHHcCCc
Q 012645 83 KTVGSRTLAEVILKYKDSES--PVNCIVYDSLLTWALDVARQFGIY 126 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~--~~Dlvi~D~~~~~~~~~a~~lgiP 126 (459)
...+.++++.+++... ++-++|..... ...+++++|.=
T Consensus 149 ----~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad 188 (197)
T TIGR02370 149 ----MYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGAD 188 (197)
T ss_pred ----HHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence 1123445555554422 35566666443 34567777653
No 239
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=64.62 E-value=14 Score=34.94 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCccEEE-eCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 102 SPVNCIV-YDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 102 ~~~Dlvi-~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
..||+|| .|... ..+..=|.++|||+|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 3689886 56544 447777899999999987544
No 240
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=64.40 E-value=47 Score=29.89 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 3 NQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 3 ~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
+.++.++++ ++ |+.|.+- ..+++.|.++|++|+.+....
T Consensus 4 ~~~~~k~vl-It-Gas~~iG--~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 4 MDFSGKTVW-VT-GAAQGIG--YAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred cCCCCCEEE-Ee-CCCchHH--HHHHHHHHHCCCEEEEEecch
Confidence 333444444 44 4445554 456888999999999987654
No 241
>PRK11519 tyrosine kinase; Provisional
Probab=64.31 E-value=1.1e+02 Score=32.93 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=31.5
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 7 RVHVLVLTY--PAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 7 ~~kil~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+.|+++++. |+-|-..-...||..|++.|++|.++-.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 456777665 68888888999999999999999999654
No 242
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=64.12 E-value=7.9 Score=33.41 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=36.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA 52 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~ 52 (459)
+||++...|+.|=+. ...+.+.|+++|++|.++.++.-.+++..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 467777777777665 89999999999999999999987777653
No 243
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=63.89 E-value=66 Score=30.04 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=58.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHh--CCCeEEEEec--CccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHH
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLAS--KRVKATLATT--HYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLE 80 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~--~Gh~V~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (459)
.++|||+++..|+...+. +|.++.+. .+++|.++.+ ++....+++.|+.+..++.... +
T Consensus 87 ~~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~--------~------ 149 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPD--------T------ 149 (286)
T ss_pred ccCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcC--------c------
Confidence 467999999988644433 34444433 3688888755 3344455667998887752110 0
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCccEEEeCCCc-hhHHHHHHHcCCceEEEccc
Q 012645 81 SFKTVGSRTLAEVILKYKDSESPVNCIVYDSLL-TWALDVARQFGIYGAAMMTN 133 (459)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~~ 133 (459)
.......+.+.++++ ++|+||.-.+. .....+.+.+.-..+-+.++
T Consensus 150 --~~~~~~~~~~~l~~~-----~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 150 --KPQQEAQVLDVVEES-----GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred --hhhhHHHHHHHHHHh-----CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
Confidence 000112233444554 89999876544 33444455554455555443
No 244
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=63.39 E-value=43 Score=28.26 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.2
Q ss_pred cceeccCchh------hHHHhhhcCCeeeccc
Q 012645 342 GCFITHCGWN------SILEGLSLGVAVVAVP 367 (459)
Q Consensus 342 ~~~I~HGG~g------s~~eal~~GvP~li~P 367 (459)
.++++|.|-| .+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3378887765 6789999999999996
No 245
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.87 E-value=11 Score=35.38 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=40.5
Q ss_pred HHhcccCccceeccCchhhHHHhhh----cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHH
Q 012645 334 EVLAHQAVGCFITHCGWNSILEGLS----LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEV 409 (459)
Q Consensus 334 ~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 409 (459)
.+...+++ +|+=||=||++.|.+ .++|++.+-. |...-.. ..+++++.+++.++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~-----------------G~lGFL~---~~~~~~~~~~l~~i 121 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ-----------------GHLGFLT---QIPREYMTDKLLPV 121 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec-----------------CCCeEee---ccCHHHHHHHHHHH
Confidence 33334666 999999999999975 3789887742 3222222 57788899999998
Q ss_pred hcC
Q 012645 410 MDG 412 (459)
Q Consensus 410 l~~ 412 (459)
+++
T Consensus 122 ~~g 124 (296)
T PRK04539 122 LEG 124 (296)
T ss_pred HcC
Confidence 876
No 246
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=62.76 E-value=61 Score=32.33 Aligned_cols=26 Identities=15% Similarity=0.246 Sum_probs=22.5
Q ss_pred CccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 103 PVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 103 ~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
+||++|.+.. ...+|+++|||++.+.
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 8999999964 5788999999999875
No 247
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=62.51 E-value=60 Score=32.67 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc----ccCC---CCceEEEcCCCCCCCCCCCCCCHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK----SIHA---TTVGVEPISDGFDEGGFKQAPSVKAYL 79 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~----~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (459)
..|++++..+ ...+.+++.|.+.|-+|..+.+..... .+.. .+..+ +
T Consensus 326 Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v--~------------------- 379 (456)
T TIGR01283 326 GKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVM--L------------------- 379 (456)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEE--E-------------------
Confidence 4577665543 345688888999999998876542211 0100 00000 0
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 80 ESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
...-...+.+.+++. +||++|... ....+|+++|||++.+.
T Consensus 380 ---~~~d~~e~~~~i~~~-----~pDl~ig~~---~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 380 ---DDANPRELLKLLLEY-----KADLLIAGG---KERYTALKLGIPFCDIN 420 (456)
T ss_pred ---eCCCHHHHHHHHhhc-----CCCEEEEcc---chHHHHHhcCCCEEEcc
Confidence 000112334444444 899999873 35678889999998863
No 248
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.32 E-value=11 Score=35.27 Aligned_cols=56 Identities=16% Similarity=0.324 Sum_probs=40.1
Q ss_pred HhcccCccceeccCchhhHHHhhhc----CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHh
Q 012645 335 VLAHQAVGCFITHCGWNSILEGLSL----GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 335 lL~~~~~~~~I~HGG~gs~~eal~~----GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 410 (459)
+...+++ +|+=||=||++.++.. ++|++.+-. |...-.. ..+++++.+++.+++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~-----------------G~lGFLt---~~~~~~~~~~l~~i~ 118 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT-----------------GRLGFLA---TVSKEEIEETIDELL 118 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec-----------------CCCCccc---ccCHHHHHHHHHHHH
Confidence 3334566 9999999999999873 788887743 3222222 577888889998888
Q ss_pred cC
Q 012645 411 DG 412 (459)
Q Consensus 411 ~~ 412 (459)
++
T Consensus 119 ~g 120 (292)
T PRK01911 119 NG 120 (292)
T ss_pred cC
Confidence 76
No 249
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=62.24 E-value=80 Score=26.62 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
+++...++-|-..-...+|..|.++|.+|.++..+.++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777789999999999999999999999999987654
No 250
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=61.89 E-value=8.8 Score=36.13 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=34.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEE
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEP 59 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~ 59 (459)
|||+++..|..|- .+|..|.+.||+|+++..+...+.+.+.|+....
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~ 47 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRS 47 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEe
Confidence 7899998888774 5788899999999999875444445555665543
No 251
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=61.73 E-value=1.1e+02 Score=32.70 Aligned_cols=102 Identities=13% Similarity=0.193 Sum_probs=59.9
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHH-hc
Q 012645 9 HVLVLT-YPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKT-VG 86 (459)
Q Consensus 9 kil~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 86 (459)
.|++.+ ...-|-..-.+.|++.|+++|++|.++=+-... +++ .......+.. ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~-----------p~~-------------~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP-----------PLT-------------MSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC-----------CCC-------------HHHHHHHHhccCC
Confidence 354443 346888899999999999999999997643221 010 0000000000 11
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCch---------hHHHHHHHcCCceEEEccch
Q 012645 87 SRTLAEVILKYKDSESPVNCIVYDSLLT---------WALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~Dlvi~D~~~~---------~~~~~a~~lgiP~v~~~~~~ 134 (459)
...+..+++.+.....+.|+||.|.... ....+|+.++.|++.+...-
T Consensus 60 ~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 1223333333332223789999776432 24677999999999998653
No 252
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=61.30 E-value=19 Score=31.07 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcC
Q 012645 22 NPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPIS 61 (459)
Q Consensus 22 ~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~ 61 (459)
.-.+.+|+.|.+.|+++. +++...+.+++.|+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKEAGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHHcCCeEEEhh
Confidence 457899999999999984 66668888888999888775
No 253
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=61.27 E-value=15 Score=34.57 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=32.8
Q ss_pred CCCcEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 5 RERVHVLVL-TYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 5 ~~~~kil~~-~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
|.|||++-+ .=|+-|-..-.+.||..|+++|++|.++-.+.
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 457776544 44788999999999999999999999995543
No 254
>PRK14098 glycogen synthase; Provisional
Probab=61.11 E-value=14 Score=37.51 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=29.7
Q ss_pred CCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 6 ERVHVLVLTY--------PAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 6 ~~~kil~~~~--------~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
+.||||+++. |+.|++ .-.|.++|+++||+|.++.+.+
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCCC
Confidence 4499999983 444444 5678899999999999999854
No 255
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=60.80 E-value=42 Score=31.38 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHh--CCCeEEEEecCc--cccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHH
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLAS--KRVKATLATTHY--TVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLE 80 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~--~Gh~V~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (459)
.++|||+++..|....+.-++ ++..+ -+++|..+.+.. ....+++.|+.+..++... . +
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~-~-------~------ 149 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTK-E-------T------ 149 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCc-c-------c------
Confidence 467899999998855554444 34433 268887776543 3344555799888775321 0 0
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCccEEEeCCCc-hhHHHHHHHcCCceEEEcc
Q 012645 81 SFKTVGSRTLAEVILKYKDSESPVNCIVYDSLL-TWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~ 132 (459)
+......+.++++++ ++|+||.-.+. .....+.+.+.-.++-+.+
T Consensus 150 --~~~~~~~~~~~l~~~-----~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 150 --KAEAEARLLELIDEY-----QPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred --cchhHHHHHHHHHHh-----CCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 001122334455555 89999876543 3333444444444444433
No 256
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=60.76 E-value=35 Score=28.60 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=24.7
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012645 14 TYPAQGHINPLLQFAKRLASKRVKATLA 41 (459)
Q Consensus 14 ~~~~~GH~~p~~~la~~L~~~Gh~V~~~ 41 (459)
+.++-|-..=.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567888889999999999999999886
No 257
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=60.53 E-value=61 Score=32.21 Aligned_cols=120 Identities=12% Similarity=0.202 Sum_probs=69.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccccCC------CCceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKSIHA------TTVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
=+++...|+.|-..=.+.+|..++ +.|+.|.|++.+...+.+.. .|+....+..+ ... ..+.......
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~----~l~-~~~~~~~~~~ 270 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTG----RFN-DSDFNRLLNA 270 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcC----CCC-HHHHHHHHHH
Confidence 367777889999999999998886 67999999998765543322 34444333211 000 0011111111
Q ss_pred HHH-------------hchHHHHHHHHHhhcCCCCccEEEeCCCchh------------------HHHHHHHcCCceEEE
Q 012645 82 FKT-------------VGSRTLAEVILKYKDSESPVNCIVYDSLLTW------------------ALDVARQFGIYGAAM 130 (459)
Q Consensus 82 ~~~-------------~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~------------------~~~~a~~lgiP~v~~ 130 (459)
... .....+...++.+.....++|+||.|.+... ...+|.++++|++.+
T Consensus 271 ~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~l 350 (421)
T TIGR03600 271 VDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLL 350 (421)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 100 1122334444444333236899999986321 224788899999998
Q ss_pred ccc
Q 012645 131 MTN 133 (459)
Q Consensus 131 ~~~ 133 (459)
+..
T Consensus 351 sQl 353 (421)
T TIGR03600 351 AQL 353 (421)
T ss_pred ccc
Confidence 763
No 258
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.33 E-value=12 Score=35.26 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=38.5
Q ss_pred ccCccceeccCchhhHHHhhhc----CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 338 HQAVGCFITHCGWNSILEGLSL----GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 338 ~~~~~~~I~HGG~gs~~eal~~----GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.+++ +|+=||=||++.|.+. ++|++.+-. |...-.. ..+.+++.+++.+++++
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~-----------------G~lGFLt---~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT-----------------GHLGFLT---EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC-----------------CCCcccc---cCCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 789887742 2222222 56778888899888876
No 259
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=60.07 E-value=94 Score=26.07 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=53.9
Q ss_pred hhhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEee-ecHHH
Q 012645 256 GDQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRW-CNQFE 334 (459)
Q Consensus 256 ~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~-~p~~~ 334 (459)
-.++-++|...+ ...++ |.. .-.+....++..+.+-+++=+++.... ..+ .........++ .+-..
T Consensus 20 A~~lg~~La~~g---~~lv~-Gg~----~GlM~a~a~ga~~~gg~viGVlp~~l~--~~~---~~~~~~i~~~~~~~Rk~ 86 (159)
T TIGR00725 20 AYRLGKELAKKG---HILIN-GGR----TGVMEAVSKGAREAGGLVVGILPDEDF--AGN---PYLTIKVKTGMNFARNF 86 (159)
T ss_pred HHHHHHHHHHCC---CEEEc-CCc----hhHHHHHHHHHHHCCCeEEEECChhhc--cCC---CCceEEEECCCcchHHH
Confidence 345777887653 45555 432 246677777777667666655432100 110 00111112233 33334
Q ss_pred HhcccCccceeccCchhhHHH---hhhcCCeeecccc
Q 012645 335 VLAHQAVGCFITHCGWNSILE---GLSLGVAVVAVPQ 368 (459)
Q Consensus 335 lL~~~~~~~~I~HGG~gs~~e---al~~GvP~li~P~ 368 (459)
++...+-..++--||.||..| ++.+++|+++++.
T Consensus 87 ~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 87 ILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 443333345666789998655 5889999999884
No 260
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=59.93 E-value=46 Score=33.76 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~ 44 (459)
||||++..|++.| +|+++|++. |++|.++-..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 7999999998887 478888876 9999888553
No 261
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=59.74 E-value=72 Score=29.85 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=34.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
.+|-+...|+-|--.=.=.|.+.|.++||+|-++.-+...
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 4677777899999999999999999999999999865433
No 262
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.68 E-value=13 Score=35.14 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=39.1
Q ss_pred ccCccceeccCchhhHHHhhhc----CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 338 HQAVGCFITHCGWNSILEGLSL----GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 338 ~~~~~~~I~HGG~gs~~eal~~----GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.+++ +|+=||=||++.|+.. ++|++.+.. |...-.. ...++++.+++.+++++
T Consensus 72 ~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~-----------------G~lGFL~---~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCEL--VLVLGGDGTILRAAELARAADVPVLGVNL-----------------GHVGFLA---EAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec-----------------CCCceec---cCCHHHHHHHHHHHHcC
Confidence 4556 9999999999998764 789888753 2222222 56678888899888876
No 263
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=59.63 E-value=22 Score=34.94 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=28.6
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEE-ecCccc
Q 012645 9 HVLVL-TYPAQGHINPLLQFAKRLASKRVKATLA-TTHYTV 47 (459)
Q Consensus 9 kil~~-~~~~~GH~~p~~~la~~L~~~Gh~V~~~-~~~~~~ 47 (459)
+|++. +..+-|-..-.+.|.++|++||++|.=+ +.|++.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYI 42 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYI 42 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCcc
Confidence 34444 4458899999999999999999998643 344444
No 264
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=59.63 E-value=63 Score=32.70 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc----ccCC---CCceEEEcCCCCCCCCCCCCCCHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK----SIHA---TTVGVEPISDGFDEGGFKQAPSVKAYL 79 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~----~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (459)
..|++++..+ ...+.+++.|.+.|-+|..+....... .+.. ++..++ .
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~--~------------------ 378 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMI--D------------------ 378 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEE--e------------------
Confidence 4577775443 345688888999999998886653221 0000 000000 0
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEE
Q 012645 80 ESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAM 130 (459)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~ 130 (459)
+.-...+.+.++.. +||++|.+ .....+|+++|||++..
T Consensus 379 ----d~~~~e~~~~i~~~-----~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 379 ----DANPRELYKMLKEA-----KADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred ----CCCHHHHHHHHhhc-----CCCEEEec---CchhhhhhhcCCCEEEc
Confidence 00011223333433 89999998 44678899999999853
No 265
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=59.41 E-value=7.6 Score=36.50 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=32.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec-CccccccCCCCceE
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT-HYTVKSIHATTVGV 57 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~-~~~~~~~~~~g~~~ 57 (459)
|||.++..|..| ..+|..|.+.||+|+++.. +...+.+.+.|+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~ 46 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNENGLRL 46 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcc
Confidence 688888887777 4678889999999999986 33333344345443
No 266
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.41 E-value=12 Score=34.94 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=39.3
Q ss_pred HhcccCccceeccCchhhHHHhhh----cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHh
Q 012645 335 VLAHQAVGCFITHCGWNSILEGLS----LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 335 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 410 (459)
+...+++ +|+=||=||++.++. +++|++.+-. |...-.. .++++++.+++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~-----------------G~lGFl~---~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINR-----------------GNLGFLT---DLDPDNALQQLSDVL 117 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC-----------------CCCCccc---ccCHHHHHHHHHHHH
Confidence 3334556 999999999999985 3678876642 2211122 566888999999998
Q ss_pred cC
Q 012645 411 DG 412 (459)
Q Consensus 411 ~~ 412 (459)
++
T Consensus 118 ~g 119 (292)
T PRK03378 118 EG 119 (292)
T ss_pred cC
Confidence 76
No 267
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.29 E-value=11 Score=33.25 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccC
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIH 51 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~ 51 (459)
.+||++.-.|+.+= +=.+.+.+.|.+.||+|.++.++.-..++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 36777776666555 689999999999999999999988766554
No 268
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=59.23 E-value=62 Score=32.14 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
.|+|+..++-|-..-...||..|+++|++|.+++.+.++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 456666679999999999999999999999999998765
No 269
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=59.22 E-value=28 Score=29.29 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=19.6
Q ss_pred eeccCchh------hHHHhhhcCCeeecccc
Q 012645 344 FITHCGWN------SILEGLSLGVAVVAVPQ 368 (459)
Q Consensus 344 ~I~HGG~g------s~~eal~~GvP~li~P~ 368 (459)
+++|.|-| .+.+|...++|+|++.-
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 66766654 66788999999999964
No 270
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.12 E-value=18 Score=29.86 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=54.6
Q ss_pred cccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 012645 366 VPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDE 445 (459)
Q Consensus 366 ~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~ 445 (459)
+|+...+..+|..+.+. .- .+. ....+.|.+.+.+|+.|. ..-+-.+.+++..+.++ |.....++.+
T Consensus 78 yPWt~~~L~aa~el~ee-~e--eLs-----~deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~---g~~v~~~~~d 144 (158)
T PF10083_consen 78 YPWTENALEAANELIEE-DE--ELS-----PDEKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA---GSIVGDAIRD 144 (158)
T ss_pred CchHHHHHHHHHHHHHH-hh--cCC-----HHHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH---hHHHHHHHHH
Confidence 68888999999988886 22 232 345688999999999762 16777888888888875 4455577777
Q ss_pred HHHHHHHhc
Q 012645 446 FVVRLLKAD 454 (459)
Q Consensus 446 ~~~~l~~~~ 454 (459)
++-++..+.
T Consensus 145 IlVdv~SEt 153 (158)
T PF10083_consen 145 ILVDVASET 153 (158)
T ss_pred HHHHHHHHH
Confidence 777766544
No 271
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=59.10 E-value=58 Score=30.11 Aligned_cols=100 Identities=10% Similarity=0.127 Sum_probs=54.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHH
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRT 89 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (459)
|+++..|+-|-......|++.|.+.|.+|.+++.+... +.. ....... .-+..+..+...
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~--------------~~y~~~~----~Ek~~R~~l~s~ 63 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDR--------------NDYADSK----KEKEARGSLKSA 63 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TT--------------SSS--GG----GHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cch--------------hhhhchh----hhHHHHHHHHHH
Confidence 67777899999999999999999999999998855433 111 0000011 112222222333
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCchh------HHHHHHHcCCceEEEccchHH
Q 012645 90 LAEVILKYKDSESPVNCIVYDSLLTW------ALDVARQFGIYGAAMMTNSAS 136 (459)
Q Consensus 90 ~~~l~~~~~~~~~~~Dlvi~D~~~~~------~~~~a~~lgiP~v~~~~~~~~ 136 (459)
+...+. +-++||.|...+. -..+|+..+.++..+......
T Consensus 64 v~r~ls-------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 64 VERALS-------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HHHHHT-------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred HHHhhc-------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 333322 2389999987743 467999999999998876543
No 272
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=59.07 E-value=77 Score=27.80 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=31.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEecCc----cccccCCCCceEEEcC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKR--VKATLATTHY----TVKSIHATTVGVEPIS 61 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~----~~~~~~~~g~~~~~~~ 61 (459)
|||+++..|..+=+ .++.+++.+.+ ++|.++.+.. ..+.+.+.|+.+..++
T Consensus 2 ~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 78999988764333 35566676654 7777765443 2233444688887764
No 273
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=58.97 E-value=53 Score=33.70 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=63.4
Q ss_pred ccCHHHHHHHH-HHHHhCCCeEEEEecCccccccCC-CCceEEEcC-CCCCC------------C-CCCCCCCH---HHH
Q 012645 18 QGHINPLLQFA-KRLASKRVKATLATTHYTVKSIHA-TTVGVEPIS-DGFDE------------G-GFKQAPSV---KAY 78 (459)
Q Consensus 18 ~GH~~p~~~la-~~L~~~Gh~V~~~~~~~~~~~~~~-~g~~~~~~~-~~~~~------------~-~~~~~~~~---~~~ 78 (459)
.|++.--+.+| +.+.+.|++|.+.-+. ..+.+++ ..+..+.++ .+++- . ..-...+. ...
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~ 114 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRR 114 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHH
Confidence 37777788888 4476778988877655 3333433 244444443 11100 0 00000111 111
Q ss_pred HHHHHH--------hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccc
Q 012645 79 LESFKT--------VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTN 133 (459)
Q Consensus 79 ~~~~~~--------~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~ 133 (459)
+..+.. ...+.....++++.+. +.++||.|. .+...|+++|++.|.+.+.
T Consensus 115 ~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~--G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 115 FQAAFNLDIVQRSYVTEEDARSCVNDLRAR--GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHhCCceEEEEecCHHHHHHHHHHHHHC--CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 111111 1144566777777666 899999995 3678999999999999774
No 274
>PHA02542 41 41 helicase; Provisional
Probab=58.92 E-value=37 Score=34.31 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK 48 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 48 (459)
+++..-|+.|-..=.+.+|...++.|+.|.|++-+...+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 677778999999999999999988999999999876554
No 275
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.92 E-value=41 Score=32.58 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=41.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc--------CCCCceEEE
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI--------HATTVGVEP 59 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~--------~~~g~~~~~ 59 (459)
--|+|+..-+-|-..-+-.+|..++++|+.+-+++.+.|+.-+ ++.++.|+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 3466777779999999999999999999999999999877543 224666654
No 276
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=58.82 E-value=14 Score=37.02 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=58.4
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEecCc-cccc--cC-CCCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 9 HVLVLT-YPAQGHINPLLQFAKRLASKRVKATLATTHY-TVKS--IH-ATTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 9 kil~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~-~~~~--~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
++++.. ..+-|-..=...|+++|+++|++|..+-+.. ..+. .. ..|.....+ +..
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~g~~~~~l-------------d~~------- 64 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAATGRPSRNL-------------DSW------- 64 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHHhCCCcccC-------------Cce-------
Confidence 344443 3467888889999999999999998885521 1000 00 001110000 000
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCC------------chhHHHHHHHcCCceEEEccch
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSL------------LTWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~------------~~~~~~~a~~lgiP~v~~~~~~ 134 (459)
....+.+.+.++.+. .+.|++|.+-. ......+|+.++.|++.+....
T Consensus 65 ~~~~~~v~~~~~~~~---~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 MMGEELVRALFARAA---QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred eCCHHHHHHHHHHhc---ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 001234444555443 25799986332 1236789999999999998644
No 277
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.56 E-value=32 Score=31.25 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=22.5
Q ss_pred EEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEe
Q 012645 9 HVLVLTYPAQ-GHINPLLQFAKRLASKRVKATLAT 42 (459)
Q Consensus 9 kil~~~~~~~-GH~~p~~~la~~L~~~Gh~V~~~~ 42 (459)
|.++++.++. +=+- ..+|+.|.++|++|++..
T Consensus 7 k~vlVtGas~~~giG--~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 7 KVAVVTGVSRLDGIG--AAICKELAEAGADIFFTY 39 (256)
T ss_pred cEEEEECCCCCCChH--HHHHHHHHHCCCeEEEEe
Confidence 5666666542 2222 789999999999998763
No 278
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=58.41 E-value=30 Score=37.24 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=66.7
Q ss_pred EEeeecHH---HHhcccCccceecc---Cch-hhHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCccc
Q 012645 326 VVRWCNQF---EVLAHQAVGCFITH---CGW-NSILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVT 398 (459)
Q Consensus 326 v~~~~p~~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~ 398 (459)
+.+++++. ++++.+++ ++.- -|. .++.|++++|+|-..+|...+--. -..++ .-|..++ ..+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G---~~~~l-~~~llv~-----P~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAG---AAAEL-AEALLVN-----PND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccc---hhHHh-CcCeEEC-----CCC
Confidence 44677766 46667777 6653 354 478899999775211121111111 11123 2255555 467
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Q 012645 399 GEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKAD 454 (459)
Q Consensus 399 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~~ 454 (459)
.+.++++|.++|+.++. +-+++.+++.+.+.+ .+...-++++++.+.+..
T Consensus 415 ~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 415 IEGIAAAIKRALEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 99999999999986421 444555555555443 666777888888876553
No 279
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.36 E-value=37 Score=31.86 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=38.6
Q ss_pred ccCccceeccCchhhHHHhhh----cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 338 HQAVGCFITHCGWNSILEGLS----LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 338 ~~~~~~~I~HGG~gs~~eal~----~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.+++ +|+=||-||+++++. .++|++.+... .+| -.. ..+.+++.++|.+++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lG---Fl~---~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLG---FLT---DIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccc---ccc---cCCHHHHHHHHHHHHcC
Confidence 3555 999999999999975 36788877542 123 112 57788999999999875
No 280
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=58.23 E-value=1.5e+02 Score=27.21 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=39.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC-CCceEEEcCCCCC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA-TTVGVEPISDGFD 65 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 65 (459)
|.+|||+++.+++...-. .++++|.+.|++|.++......+.... ..++.+-+|.++.
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCC
Confidence 456899999997766443 567999999999998876542221111 3677777776643
No 281
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=58.17 E-value=1.2e+02 Score=27.61 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC-ccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHh
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH-YTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTV 85 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
.|+|+++. ++++ ...|++.|...++.+++.+.. +..+..++.+- ..... ..
T Consensus 2 ~~~ilvlG--GT~D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~--~~~~G---------------------~l 53 (257)
T COG2099 2 MMRILLLG--GTSD---ARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP--VRVGG---------------------FL 53 (257)
T ss_pred CceEEEEe--ccHH---HHHHHHHhhccCccEEEEEcccccccchhccCC--eeecC---------------------cC
Confidence 35677664 3333 368999999999777766654 33443333222 11100 00
Q ss_pred chHHHHHHHHHhhcCCCCccEEEeCCCchh------HHHHHHHcCCceEEEcc
Q 012645 86 GSRTLAEVILKYKDSESPVNCIVYDSLLTW------ALDVARQFGIYGAAMMT 132 (459)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~------~~~~a~~lgiP~v~~~~ 132 (459)
-.+.+..++++- +.|+||=-.+-++ +..+|+..|||++++.-
T Consensus 54 ~~e~l~~~l~e~-----~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 54 GAEGLAAFLREE-----GIDLLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred CHHHHHHHHHHc-----CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 123344455543 7888872222222 45789999999999753
No 282
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=58.05 E-value=22 Score=31.31 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccC--HHHHHHHHHHHHh
Q 012645 8 VHVLVLTYPAQGH--INPLLQFAKRLAS 33 (459)
Q Consensus 8 ~kil~~~~~~~GH--~~p~~~la~~L~~ 33 (459)
||||+..|+-+|+ .||.-.++++|.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 7899999876665 7999999999965
No 283
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=58.00 E-value=63 Score=30.44 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=27.0
Q ss_pred EEEEEcCC-CccC---HHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 9 HVLVLTYP-AQGH---INPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 9 kil~~~~~-~~GH---~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
||.++..| +.=| +.-...+.++|.++||+|.++....
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~ 41 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDK 41 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 45555554 4444 4567888999999999999987653
No 284
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.78 E-value=41 Score=31.86 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=43.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc--------CCCCceEEEc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI--------HATTVGVEPI 60 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~--------~~~g~~~~~~ 60 (459)
.-|+|+..-+.|-.--.--||..|.+.|+.|.++..+-|+.-+ +..|+.++.-
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 3467777789999999999999999999999999999887543 2247777764
No 285
>PRK06988 putative formyltransferase; Provisional
Probab=57.49 E-value=50 Score=31.28 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|||+|+..+.. .+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcC
Confidence 89999966553 345566777889998877764
No 286
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=57.47 E-value=90 Score=30.87 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=20.8
Q ss_pred CccEEEeCCCchhHHHHHHHcCCceEEE
Q 012645 103 PVNCIVYDSLLTWALDVARQFGIYGAAM 130 (459)
Q Consensus 103 ~~Dlvi~D~~~~~~~~~a~~lgiP~v~~ 130 (459)
+||++|.+.. ...+|+++|+|++.+
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 8999999944 567889999999864
No 287
>PRK06849 hypothetical protein; Provisional
Probab=57.46 E-value=20 Score=35.15 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
++|+||++.... .-.+.+|+.|.++||+|+.+....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357888875332 258899999999999999997764
No 288
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=57.27 E-value=53 Score=31.51 Aligned_cols=32 Identities=31% Similarity=0.327 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEE
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRV-KATLA 41 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh-~V~~~ 41 (459)
.+..||+++..|+.| -.+|+.|++.|+ +++++
T Consensus 22 L~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lv 54 (338)
T PRK12475 22 IREKHVLIVGAGALG-----AANAEALVRAGIGKLTIA 54 (338)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEE
Confidence 345789999999888 678999999998 55555
No 289
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=56.80 E-value=64 Score=28.33 Aligned_cols=146 Identities=12% Similarity=0.049 Sum_probs=78.6
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcC-CCceEEeeecHHHHhcccCccceec
Q 012645 268 EKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVG-ETGLVVRWCNQFEVLAHQAVGCFIT 346 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~v~v~~~~p~~~lL~~~~~~~~I~ 346 (459)
.+.++.|+.|.++ ...++.+...|.++.++... ....+.+... +.+..........-+..+++ +|.
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~----~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl--Via 76 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE----LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL--VIA 76 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC----CCHHHHHHHhCCCEEEEecCCChhhcCCceE--EEE
Confidence 4558888888765 33455666677776655321 1111211111 23444443344556766666 888
Q ss_pred cCchhhHHHhhh----cCCeeeccccccchh-----hHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHH
Q 012645 347 HCGWNSILEGLS----LGVAVVAVPQFSDQP-----TNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQK 417 (459)
Q Consensus 347 HGG~gs~~eal~----~GvP~li~P~~~DQ~-----~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 417 (459)
--+...+.+.++ .++++-++ |.+ ..-..+.+- ++-+.+......-.-+..|++.|.+++. ++.+.
T Consensus 77 aT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~-~~~~~ 150 (202)
T PRK06718 77 ATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYD-ESYES 150 (202)
T ss_pred cCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcc-hhHHH
Confidence 777776666655 34544332 322 222333444 4445555431112334667778877773 33446
Q ss_pred HHHHHHHHHHHHHHH
Q 012645 418 IKRNVSKWREFAKKA 432 (459)
Q Consensus 418 ~~~~a~~l~~~~~~~ 432 (459)
+-+.+.++++.+++.
T Consensus 151 ~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 151 YIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777888888877753
No 290
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=56.78 E-value=85 Score=29.86 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=56.4
Q ss_pred cEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 8 VHVLVLTYPAQG-----HINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 8 ~kil~~~~~~~G-----H~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
.-|++.++.+.| ...-+..|++.|.++|++|.+.+++...+..+. +.- ..+... ....
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~--i~~-~~~~~~--------------~~l~ 237 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNE--IEA-LLPGEL--------------RNLA 237 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHH--HHH-hCCccc--------------ccCC
Confidence 345555544333 234688999999988999999988765543321 000 000000 0000
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEcc
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~ 132 (459)
....-..+..+++ +.|++|+.. .+...+|.-+|+|.|.++.
T Consensus 238 g~~sL~el~ali~-------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 238 GETSLDEAVDLIA-------LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred CCCCHHHHHHHHH-------hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 0011122333444 459999765 4567889999999999865
No 291
>PLN02470 acetolactate synthase
Probab=56.74 E-value=26 Score=36.57 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=52.4
Q ss_pred EeCCcccCC--HHHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhhcCCCceEEee--------ecHHHHhcccCccc
Q 012645 275 SFGSMADIA--ANQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVNSVGETGLVVRW--------CNQFEVLAHQAVGC 343 (459)
Q Consensus 275 s~Gs~~~~~--~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~v~~~--------~p~~~lL~~~~~~~ 343 (459)
+|||....+ ....+.+++.|++.|.+.|+.+.+.. ..+-+.+. ..++++++.- +-...-..+....+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~--~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv 79 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALT--RSNCIRNVLCRHEQGEVFAAEGYAKASGKVGV 79 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHh--ccCCceEEEeccHHHHHHHHHHHHHHhCCCEE
Confidence 466655322 23356788888888888888877653 22222221 1123333321 11111112223455
Q ss_pred eeccCchh------hHHHhhhcCCeeeccc
Q 012645 344 FITHCGWN------SILEGLSLGVAVVAVP 367 (459)
Q Consensus 344 ~I~HGG~g------s~~eal~~GvP~li~P 367 (459)
+++|.|-| .+.+|...++|+|++.
T Consensus 80 ~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 80 CIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred EEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 88888765 7789999999999995
No 292
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.74 E-value=11 Score=34.78 Aligned_cols=58 Identities=9% Similarity=0.129 Sum_probs=38.8
Q ss_pred HHHhcccCccceeccCchhhHHHhhh----cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHH
Q 012645 333 FEVLAHQAVGCFITHCGWNSILEGLS----LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNE 408 (459)
Q Consensus 333 ~~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ 408 (459)
..+...+++ +|+=||=||++.|++ .++|++.+-.. .+|- .. ..+++++.+.+.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGF---L~---~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGF---LT---DIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcc---cc---cCCHHHHHHHHHH
Confidence 444444666 999999999998765 36788766421 1231 12 4667778888888
Q ss_pred HhcC
Q 012645 409 VMDG 412 (459)
Q Consensus 409 ll~~ 412 (459)
++++
T Consensus 95 ~~~~ 98 (272)
T PRK02231 95 CLER 98 (272)
T ss_pred HHhc
Confidence 8773
No 293
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.66 E-value=21 Score=31.70 Aligned_cols=55 Identities=5% Similarity=-0.035 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc----cccccCCCCceEEEc
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY----TVKSIHATTVGVEPI 60 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~----~~~~~~~~g~~~~~~ 60 (459)
.+-||++.+.++..|-....=++..|..+|++|++++..- +.+.+.+.+.+++-+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~l 145 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGL 145 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3569999999999999999999999999999999998653 233334445555555
No 294
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=56.51 E-value=70 Score=28.91 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=23.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
|.++++ |+.|.+-. .+++.|.++|++|+++....
T Consensus 8 ~~vlIt-Gasg~iG~--~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 8 KTAVVT-GAASGIGK--EIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CEEEEE-CCCChHHH--HHHHHHHHCCCeEEEEeCCh
Confidence 555566 44455553 57889999999998776543
No 295
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=56.30 E-value=37 Score=28.74 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=26.6
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHH----H-Hc-CCceEEEcc
Q 012645 81 SFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVA----R-QF-GIYGAAMMT 132 (459)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a----~-~l-giP~v~~~~ 132 (459)
.+.....+.+.+++++. +||+||+-..+.....++ + .+ ++|++.+.+
T Consensus 72 ~~~~~~~~~l~~~l~~~-----~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREF-----QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHHHhhc-----CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 34444444556666654 999999886653322021 2 23 578776644
No 296
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=56.26 E-value=15 Score=31.78 Aligned_cols=41 Identities=5% Similarity=0.012 Sum_probs=33.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK 48 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 48 (459)
.||++.-.|+.|=+.-.+.+.++|++.|++|.++.++.-..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 36777777888877777899999999999999998876543
No 297
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.07 E-value=18 Score=33.31 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=37.5
Q ss_pred cCccceeccCchhhHHHhhhc-----CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 339 QAVGCFITHCGWNSILEGLSL-----GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 339 ~~~~~~I~HGG~gs~~eal~~-----GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
+++ +|+=||=||++.|+.. .+|++.+-.. |...-.. +.+.+++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~----------------G~lGFL~---~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTK----------------DQLGFYC---DFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecC----------------CCCeEcc---cCCHHHHHHHHHHHHcC
Confidence 566 9999999999999874 5676555320 2222223 57788899999888876
No 298
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.02 E-value=14 Score=34.07 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=38.0
Q ss_pred ccCccceeccCchhhHHHhhhc-CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 338 HQAVGCFITHCGWNSILEGLSL-GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 338 ~~~~~~~I~HGG~gs~~eal~~-GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.+++ +|+=||-||++.++.. .+|++.+- .|...-.. ..+.+++.+++.+++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN-----------------~G~lGFL~---~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGIN-----------------MGGLGFLT---EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEE-----------------CCCCccCc---ccCHHHHHHHHHHHHcC
Confidence 3566 9999999999999884 56766553 22222222 57788999999999886
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=55.80 E-value=65 Score=32.04 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~ 49 (459)
-|+++..++-|-..-...||..|. ++|+.|.+++.+.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 456666679999999999999997 58999999999877653
No 300
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.45 E-value=8.1 Score=32.36 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=27.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
||.++..|..|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 677888888776 78999999999999999874
No 301
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.32 E-value=45 Score=29.11 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=37.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc--------CCCCceEEEc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI--------HATTVGVEPI 60 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~--------~~~g~~~~~~ 60 (459)
|+|+...+-|-..-...||..++.+|.+|.+++.+.++--. +..|+.+...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchh
Confidence 56666679999999999999999999999999998776322 1137776654
No 302
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=55.26 E-value=46 Score=31.00 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCeEEEEecCccc
Q 012645 25 LQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 25 ~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
..+|..++++|++|.+++.+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999987543
No 303
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=54.86 E-value=60 Score=31.81 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=64.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC----CCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHh
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA----TTVGVEPISDGFDEGGFKQAPSVKAYLESFKTV 85 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (459)
||+-.-|+.|--.=++.++..|+++| .|.+++.+.-...++- .|+.-.. +..+.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~-------------------l~l~a-- 153 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNN-------------------LYLLA-- 153 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccc-------------------eEEeh--
Confidence 56666689999999999999999999 9999999865543321 1211100 00000
Q ss_pred chHHHHHHHHHhhcCCCCccEEEeCCCch---------------------hHHHHHHHcCCceEEEccch
Q 012645 86 GSRTLAEVILKYKDSESPVNCIVYDSLLT---------------------WALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~---------------------~~~~~a~~lgiP~v~~~~~~ 134 (459)
+..++++++.+... +||++|.|.... .-..+|+..||+.+.+.+-+
T Consensus 154 -Et~~e~I~~~l~~~--~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVT 220 (456)
T COG1066 154 -ETNLEDIIAELEQE--KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVT 220 (456)
T ss_pred -hcCHHHHHHHHHhc--CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEc
Confidence 11233444444333 999999997421 12357888999999987754
No 304
>PLN02929 NADH kinase
Probab=54.58 E-value=48 Score=31.14 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=42.9
Q ss_pred cCccceeccCchhhHHHhhh---cCCeeecccccc------chhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHH
Q 012645 339 QAVGCFITHCGWNSILEGLS---LGVAVVAVPQFS------DQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEV 409 (459)
Q Consensus 339 ~~~~~~I~HGG~gs~~eal~---~GvP~li~P~~~------DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 409 (459)
+++ +|+-||=||++.|.. .++|++.+=... +++.|... +.. -+|-.. ..+.+++.++|.++
T Consensus 65 ~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~------~~~~~~~~~~L~~i 134 (301)
T PLN02929 65 VDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC------AATAEDFEQVLDDV 134 (301)
T ss_pred CCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc------cCCHHHHHHHHHHH
Confidence 566 999999999999855 468988876542 22333322 111 244322 46788999999999
Q ss_pred hcC
Q 012645 410 MDG 412 (459)
Q Consensus 410 l~~ 412 (459)
+++
T Consensus 135 l~g 137 (301)
T PLN02929 135 LFG 137 (301)
T ss_pred HcC
Confidence 986
No 305
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=54.28 E-value=25 Score=30.79 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=31.7
Q ss_pred CCCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 5 RERVHVLVLTY--PAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 5 ~~~~kil~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+.+||++.++. |+-|-..=...||.+|+++|++|.++=..
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34577777765 57778888999999999999999887554
No 306
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=53.95 E-value=1.4e+02 Score=29.68 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=22.3
Q ss_pred CccEEEeCCCchhHHHHHHHcCCceEEEcc
Q 012645 103 PVNCIVYDSLLTWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 103 ~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~ 132 (459)
+||++|.+.. ...+|+++|+|++.++.
T Consensus 370 ~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 8999999963 55568999999998754
No 307
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=53.94 E-value=31 Score=28.57 Aligned_cols=26 Identities=4% Similarity=0.152 Sum_probs=20.5
Q ss_pred ceeccCchh------hHHHhhhcCCeeecccc
Q 012645 343 CFITHCGWN------SILEGLSLGVAVVAVPQ 368 (459)
Q Consensus 343 ~~I~HGG~g------s~~eal~~GvP~li~P~ 368 (459)
++++|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 388886654 67788999999999963
No 308
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.93 E-value=25 Score=28.50 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=44.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc----cccccCCCCceEEEcC
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY----TVKSIHATTVGVEPIS 61 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~----~~~~~~~~g~~~~~~~ 61 (459)
++.||++.+.++.+|-..--=++..|...|++|+...... +.+.+.+.+.+++-+.
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 3679999999999999999999999999999999887643 3333344577777663
No 309
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=53.80 E-value=13 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=36.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEecCccccccCC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLAS-KRVKATLATTHYTVKSIHA 52 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~~~~~~~~~ 52 (459)
+||++.-.|+-| .+=...+.++|.+ .||+|.++.++.-.+++..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 467777777777 6779999999998 5999999999988777653
No 310
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=53.75 E-value=1.2e+02 Score=24.54 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe--cCccccccCCCCceEEEcC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLAT--THYTVKSIHATTVGVEPIS 61 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~--~~~~~~~~~~~g~~~~~~~ 61 (459)
.+.||+|+.-.|+..-++-++ .+|...|..-++-+ +.+....++..|++...++
T Consensus 14 y~~MrFLIThnPtnaTln~fi---eELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~ 69 (173)
T KOG2836|consen 14 YKNMRFLITHNPTNATLNKFI---EELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWP 69 (173)
T ss_pred ccceEEEEecCCCchhHHHHH---HHHHhcCCeEEEEecccccCCchhhhcCceEeecc
Confidence 567999999999999988776 68999997643333 3455566788999999886
No 311
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=53.74 E-value=84 Score=32.16 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.6
Q ss_pred CccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 103 PVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 103 ~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
+||++|.+. .+..+|+++|+|++.+.
T Consensus 437 ~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 899999985 46788999999999875
No 312
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=52.65 E-value=53 Score=30.12 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
+++...|+.|-..=.+.++...+++|..|.|++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 455666799999999999998888999999999874
No 313
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=52.35 E-value=24 Score=35.37 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcC--CCCCCC
Q 012645 22 NPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPIS--DGFDEG 67 (459)
Q Consensus 22 ~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~ 67 (459)
.-.+.+|+.|.+.|+++. ++....+.+++.|+.+..+. .++++.
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~GI~v~~Vsk~TgfPEi 56 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAEAGVPVTEVSDYTGFPEM 56 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHHCCCeEEEeecccCCchh
Confidence 447899999999999984 77778888899999888775 344443
No 314
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=52.18 E-value=9.5 Score=30.75 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=26.9
Q ss_pred EEcCC-CccCHHHHHHHHHHHHhCCCeEEEEecCccccccC
Q 012645 12 VLTYP-AQGHINPLLQFAKRLASKRVKATLATTHYTVKSIH 51 (459)
Q Consensus 12 ~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~ 51 (459)
++.+| ..-.+--.+-++..|+++||+|++++++.....++
T Consensus 3 lLGCPe~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 3 LLGCPEVPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp E---S-STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 33444 33334447788999999999999999998776654
No 315
>PRK08006 replicative DNA helicase; Provisional
Probab=52.07 E-value=1e+02 Score=31.12 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=33.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~ 49 (459)
=|++..-|+.|-..-.+.+|...+ +.|+.|.|++-+...+.
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~q 267 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQ 267 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 367777899999999999998886 46999999998865543
No 316
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=51.74 E-value=19 Score=32.84 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=30.6
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEecCcccc
Q 012645 8 VHVLVLTYP---AQGHINPLLQFAKRLASKRVKATLATTHYTVK 48 (459)
Q Consensus 8 ~kil~~~~~---~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 48 (459)
||++|+|.| +.|-=.-...||+.|+++|++|+..--+.+..
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlN 44 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLN 44 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccc
Confidence 689999987 66666778999999999999999998776664
No 317
>PRK08226 short chain dehydrogenase; Provisional
Probab=51.52 E-value=63 Score=29.32 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=22.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.+ .|-+-. .+++.|.++|++|+.+...
T Consensus 7 ~~~lItG~-s~giG~--~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 7 KTALITGA-LQGIGE--GIARVFARHGANLILLDIS 39 (263)
T ss_pred CEEEEeCC-CChHHH--HHHHHHHHCCCEEEEecCC
Confidence 45556644 354544 4788999999999888654
No 318
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=51.49 E-value=60 Score=31.05 Aligned_cols=97 Identities=10% Similarity=0.110 Sum_probs=58.6
Q ss_pred cEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEecCccccccCC--CCceEEE-cCCCCCCCCCCCCCCHHHHH
Q 012645 8 VHVLVLTYPAQG-----HINPLLQFAKRLASKRVKATLATTHYTVKSIHA--TTVGVEP-ISDGFDEGGFKQAPSVKAYL 79 (459)
Q Consensus 8 ~kil~~~~~~~G-----H~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (459)
..|+|.++.+.| -..-+..|++.|.++|++|.+.+++...+.+++ .++.... + ..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l---------~~-------- 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVIL---------AG-------- 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCcccc---------CC--------
Confidence 456666662332 345689999999999999999988844443322 0111000 1 00
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccch
Q 012645 80 ESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~ 134 (459)
...+.++..-+. ..|++|+.. .+...+|.-+|.|+|.+...+
T Consensus 239 -------k~sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 239 -------KTSLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -------CCCHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 111222222222 569988664 456788999999999997544
No 319
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.32 E-value=12 Score=32.95 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=30.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 11 LVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 11 l~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
++-.--+.|--.=...++.-+...||.|++++++...
T Consensus 32 lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 32 LIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred EEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 3444458888888999999999999999999998543
No 320
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=50.87 E-value=21 Score=35.94 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=38.5
Q ss_pred ccCccceeccCchhhHHHhhhc----CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 338 HQAVGCFITHCGWNSILEGLSL----GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 338 ~~~~~~~I~HGG~gs~~eal~~----GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
.+++ +|+=||-||++.|... ++|++.+-. . .+|-. . .++.+++.++|.+++++
T Consensus 262 ~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~--------G------~LGFL---t---~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSM--------G------SLGFM---T---PFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC--------C------Cccee---c---ccCHHHHHHHHHHHHcC
Confidence 4555 9999999999999774 567766531 1 23432 2 57889999999999876
No 321
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=50.35 E-value=1.5e+02 Score=24.68 Aligned_cols=139 Identities=15% Similarity=0.216 Sum_probs=70.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCch
Q 012645 271 VIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGW 350 (459)
Q Consensus 271 ~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~ 350 (459)
.|-|-+||.. +....+++...|+..|..+-+.+..- -..|+.+. +++ .-+.+-.++.||.=.|.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa-HR~p~~l~----------~~~---~~~~~~~~~viIa~AG~ 65 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA-HRTPERLL----------EFV---KEYEARGADVIIAVAGM 65 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T-TTSHHHHH----------HHH---HHTTTTTESEEEEEEES
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec-cCCHHHHH----------HHH---HHhccCCCEEEEEECCC
Confidence 5666677754 66778888999998886655444332 12222221 111 11111123337776665
Q ss_pred h----hHHHhhhcCCeeeccccccchhhHH---HHHHHh-hhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHH
Q 012645 351 N----SILEGLSLGVAVVAVPQFSDQPTNA---KFVEEV-WEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNV 422 (459)
Q Consensus 351 g----s~~eal~~GvP~li~P~~~DQ~~na---~rv~~~-~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 422 (459)
. ++..++. -.|+|.+|....+.... .-+.++ -|++...-.- ++..++..+...|-. +.|+ +++++.
T Consensus 66 ~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa-~~d~---~l~~kl 139 (150)
T PF00731_consen 66 SAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILA-LKDP---ELREKL 139 (150)
T ss_dssp S--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHH-TT-H---HHHHHH
T ss_pred cccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHh-cCCH---HHHHHH
Confidence 4 4455554 79999999876644322 222332 1344322221 013455555444432 3566 899999
Q ss_pred HHHHHHHHH
Q 012645 423 SKWREFAKK 431 (459)
Q Consensus 423 ~~l~~~~~~ 431 (459)
+..+++.++
T Consensus 140 ~~~~~~~~~ 148 (150)
T PF00731_consen 140 RAYREKMKE 148 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999888765
No 322
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=50.32 E-value=45 Score=28.13 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=20.7
Q ss_pred eeccCchh------hHHHhhhcCCeeecccc
Q 012645 344 FITHCGWN------SILEGLSLGVAVVAVPQ 368 (459)
Q Consensus 344 ~I~HGG~g------s~~eal~~GvP~li~P~ 368 (459)
+++|+|-| .+.||...++|+|++.-
T Consensus 64 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 64 VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 78888765 56799999999999953
No 323
>PRK06194 hypothetical protein; Provisional
Probab=50.25 E-value=58 Score=30.05 Aligned_cols=32 Identities=34% Similarity=0.315 Sum_probs=22.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|.++++.++ |-+- ..++++|.++|++|+++..
T Consensus 7 k~vlVtGas-ggIG--~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITGAA-SGFG--LAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeCCc-cHHH--HHHHHHHHHCCCEEEEEeC
Confidence 455666443 4443 3578899999999988764
No 324
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=50.19 E-value=1.4e+02 Score=24.52 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.+...++.|--..+..++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 66777789999999999999999999999888765
No 325
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=50.02 E-value=1.1e+02 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=26.4
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVLVLT-YPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
++|.++. .|..|. .+|+.|+++||+|++....
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 6888886 677775 5789999999999998854
No 326
>PRK07952 DNA replication protein DnaC; Validated
Probab=49.87 E-value=82 Score=28.63 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=29.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
-++|...++.|=..=..+||.+|.++|+.|.|++...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 3566666788888888899999998999998886543
No 327
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.57 E-value=37 Score=29.04 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=43.8
Q ss_pred cccCccceeccCchhhHHHhhhcCCeeecccccc-c----------------------hhhHHHHHHHhhhceEEeeecC
Q 012645 337 AHQAVGCFITHCGWNSILEGLSLGVAVVAVPQFS-D----------------------QPTNAKFVEEVWEVGVRAKKNR 393 (459)
Q Consensus 337 ~~~~~~~~I~HGG~gs~~eal~~GvP~li~P~~~-D----------------------Q~~na~rv~~~~G~G~~~~~~~ 393 (459)
.+..++.+|++||......... ++|+|-++... | ...+...+.+++|+-...-.
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-- 107 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-- 107 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE--
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE--
Confidence 3455566999999999998887 99999998642 2 33346666666566544444
Q ss_pred CCcccHHHHHHHHHHHhcC
Q 012645 394 AGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 394 ~~~~~~~~l~~~i~~ll~~ 412 (459)
--+++++...|.++..+
T Consensus 108 --~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 108 --YDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp --ESSHHHHHHHHHHHHHT
T ss_pred --ECCHHHHHHHHHHHHHc
Confidence 35677777777777543
No 328
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=49.54 E-value=78 Score=28.55 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=22.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.+ .|.+- ..+|+.|.++|++|++....
T Consensus 11 k~vlItGa-~g~iG--~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 11 RRALVTGS-SQGIG--YALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CEEEEECC-cchHH--HHHHHHHHHcCCEEEEEeCC
Confidence 45555543 44443 56788999999999876543
No 329
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=49.29 E-value=19 Score=30.89 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA 52 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~ 52 (459)
||++.-.|+.| ..-...+.+.|+++|++|.++.++.-..++..
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 56666666554 44667999999999999999999887776653
No 330
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=49.22 E-value=30 Score=32.34 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=34.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT 46 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 46 (459)
|||.++.=|+-|-..-.+.||.+|+++|++|.++=.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 778888889999999999999999999999988866543
No 331
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.09 E-value=28 Score=32.86 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
.+|||.|+..|..|. ++|+.|.+.||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCCC
Confidence 479999998888774 68999999999999887643
No 332
>PRK06904 replicative DNA helicase; Validated
Probab=49.06 E-value=24 Score=35.69 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=33.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLAS-KRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~~~~~~ 49 (459)
=|++..-|+.|-..=.+.+|...+. .|+.|.|++.+...+.
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~q 264 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQ 264 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 3677778999999999999998764 5999999998865544
No 333
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.01 E-value=95 Score=28.39 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=23.7
Q ss_pred EEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEec
Q 012645 9 HVLVLTYPAQG-HINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 9 kil~~~~~~~G-H~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|+++++.++.| -+- .++|++|+++|++|.+...
T Consensus 7 k~~lITGas~~~GIG--~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 7 KRILVTGVASKLSIA--YGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred CEEEEeCCCCCccHH--HHHHHHHHHCCCEEEEEec
Confidence 67778876643 332 4689999999999987643
No 334
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=48.88 E-value=15 Score=31.73 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIH 51 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~ 51 (459)
||++.-.|+-|-+. ...+.+.|+++|++|.++.++.-..++.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 45555556666554 4899999999999999999998777664
No 335
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.86 E-value=24 Score=32.36 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=36.4
Q ss_pred cCccceeccCchhhHHHhhh-cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 339 QAVGCFITHCGWNSILEGLS-LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 339 ~~~~~~I~HGG~gs~~eal~-~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
+++ +|+=||-||++.|+. .++|++.+-. |...-.. ..+.+++.+++.+++++
T Consensus 42 ~d~--vi~iGGDGT~L~a~~~~~~Pilgin~-----------------G~lGfl~---~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 42 ADL--IIVVGGDGTVLKAAKKVGTPLVGFKA-----------------GRLGFLS---SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCE--EEEECCcHHHHHHHHHcCCCEEEEeC-----------------CCCcccc---ccCHHHHHHHHHHHHcC
Confidence 455 999999999999987 4777766542 2211122 46678888888888775
No 336
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=48.77 E-value=1.8e+02 Score=25.24 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=56.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc-----c-ccCC--CCceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV-----K-SIHA--TTVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~-----~-~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
|.+++..+-|-....+.+|-+-.-+|.+|.++-.-... . .+.. .+++|+..++.+.... ++... +.
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~----~~~~~--d~ 104 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWET----QDREA--DI 104 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCC----cCcHH--HH
Confidence 77888888888877777766666677787766431111 1 1222 4688888886665532 11111 11
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCch
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT 114 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~ 114 (459)
......+....+.+.+. ++|+||.|.+.+
T Consensus 105 --~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 105 --AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred --HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 22334455555555433 899999998765
No 337
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=48.76 E-value=35 Score=32.31 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 15 YPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 15 ~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
.|+.|-.==.+.|++.|+++|++|.+++-.+..
T Consensus 38 vGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 38 VGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 589999988999999999999999999987655
No 338
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=48.49 E-value=63 Score=29.01 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=32.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEecCccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASK-RVKATLATTHYTVKS 49 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~~~~~~ 49 (459)
+++...++.|=..=.+.++..++.. |+.|.|++.+.....
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~ 56 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQ 56 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHH
Confidence 5666677999999999998888777 999999998865543
No 339
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=48.39 E-value=38 Score=33.74 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=36.3
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 8 VHVLVLTYP---AQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 8 ~kil~~~~~---~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
||.+|+|.| +.|-=.-...||..|++||++|+..--+.+...
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNv 45 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNV 45 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceec
Confidence 578999987 778888899999999999999999988776653
No 340
>PRK12342 hypothetical protein; Provisional
Probab=47.84 E-value=34 Score=31.27 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=55.4
Q ss_pred CHHH----HHHHHHHHHhCCCeEEEEecCccc--cc-c-CC---CCceE-EEcCCC-CCCCCCCCCCCHHHHHHHHHHhc
Q 012645 20 HINP----LLQFAKRLASKRVKATLATTHYTV--KS-I-HA---TTVGV-EPISDG-FDEGGFKQAPSVKAYLESFKTVG 86 (459)
Q Consensus 20 H~~p----~~~la~~L~~~Gh~V~~~~~~~~~--~~-~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (459)
-+|| .++.|-+|++.|.+|+.++-.... .. + .+ .|.+- +-+.+. +.. .+....
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g------~D~~at-------- 97 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEH------ALPLDT-------- 97 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCC------CCHHHH--------
Confidence 4566 477788888779999998865432 21 2 21 35433 222211 111 111111
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCch------hHHHHHHHcCCceEEEccc
Q 012645 87 SRTLAEVILKYKDSESPVNCIVYDSLLT------WALDVARQFGIYGAAMMTN 133 (459)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~Dlvi~D~~~~------~~~~~a~~lgiP~v~~~~~ 133 (459)
...+...++++ +||+|++..-+. .+..+|+.||+|++.+...
T Consensus 98 a~~La~~i~~~-----~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 98 AKALAAAIEKI-----GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHHh-----CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 13344455554 699999765442 2789999999999997653
No 341
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=47.66 E-value=20 Score=35.25 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=37.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA 52 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~ 52 (459)
++++||++.-.|+. ...-...+.+.|++.|++|.++.++.-..++..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 35678888877766 455789999999999999999999987776654
No 342
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.44 E-value=26 Score=30.88 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLAT 42 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~ 42 (459)
.|+++++.++.|-+. -+||+++.+.|+.|.-.+
T Consensus 7 ~k~VlItgcs~GGIG--~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIG--YALAKEFARNGYLVYATA 39 (289)
T ss_pred CCeEEEeecCCcchh--HHHHHHHHhCCeEEEEEc
Confidence 344444443333332 268999999999986443
No 343
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=47.17 E-value=35 Score=32.09 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
.|||+|+..|.++ ...-++|.+.||+|.-+.+...+
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCCCC
Confidence 4899999888654 45567787899998888775444
No 344
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=47.14 E-value=1.5e+02 Score=25.03 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=54.7
Q ss_pred EEEEcCCCccCHH----HHHHHHHHHHhCCCeEEEEecCcccc----ccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 10 VLVLTYPAQGHIN----PLLQFAKRLASKRVKATLATTHYTVK----SIHATTVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 10 il~~~~~~~GH~~----p~~~la~~L~~~Gh~V~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
|+++.-...|.+. -.+..|+.|. | +|+.++.....+ .+...|.+-+-.-+. . .+.. .
T Consensus 2 ilV~~E~~~g~l~~~s~el~~~A~~l~--~-~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~--~-------~~~~---~ 66 (168)
T cd01715 2 VLVLAEHRNGELRELTLEAVTAARKLG--G-EVTALVIGSGAEAVAAALKAYGADKVLVAED--P-------ALAH---Y 66 (168)
T ss_pred EEEEEEecCCChHHHHHHHHHHHHHhC--C-CEEEEEECCChHHHHHHHHhcCCCEEEEecC--h-------hhcc---c
Confidence 4555555667777 4667777773 3 466665433221 122345543332110 0 0000 0
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCch---hHHHHHHHcCCceEEEcc
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT---WALDVARQFGIYGAAMMT 132 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~---~~~~~a~~lgiP~v~~~~ 132 (459)
........+.+++++. +||+|+...-.. .+..+|.+||.|++.-..
T Consensus 67 ~~~~~a~al~~~i~~~-----~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 67 LAEPYAPALVALAKKE-----KPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred ChHHHHHHHHHHHHhc-----CCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 0111123344455543 789999776553 378899999999998654
No 345
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=47.13 E-value=79 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|||+|+..+.. .++..+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~~-----a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPEF-----AVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCHH-----HHHHHHHHHHCCCcEEEEEC
Confidence 78999865543 35667788778999887665
No 346
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=47.11 E-value=16 Score=35.08 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEE
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVE 58 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~ 58 (459)
|||.|+..|..|- .+|..|+++||+|+++......+.+.+.|+.+.
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~ 48 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRARIGDELRAHGLTLT 48 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHHHHHHHHhcCceee
Confidence 7899998888874 578899999999999987544344444565554
No 347
>PRK04940 hypothetical protein; Provisional
Probab=47.06 E-value=50 Score=28.39 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=25.7
Q ss_pred CccEEEeCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 103 PVNCIVYDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 103 ~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
++++||-..+- +||..+|+++|+|.|.+.|.-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 45788866655 789999999999999997643
No 348
>PRK07206 hypothetical protein; Provisional
Probab=47.05 E-value=76 Score=31.36 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=23.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
+++++-.... -..++++++++|++++.+....
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 5666665433 3468999999999998888653
No 349
>PRK07236 hypothetical protein; Provisional
Probab=46.76 E-value=23 Score=34.56 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=30.5
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.+ |+.++|+++-.|-.| +.+|..|+++|++|+++=-.
T Consensus 1 ~~~-~~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 1 MTH-MSGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCC-CCCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEecC
Confidence 455 677899999887444 77899999999999998743
No 350
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=46.49 E-value=47 Score=33.57 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcC--CCCCCC
Q 012645 21 INPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPIS--DGFDEG 67 (459)
Q Consensus 21 ~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~ 67 (459)
=.-++.+|+.|.+.|+++. ++....+.+++.|+.+..+. .++++.
T Consensus 14 K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~GI~v~~V~k~TgfpEi 60 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL--STGGTAKLLAEAGIPVTEVSDVTGFPEI 60 (513)
T ss_pred cccHHHHHHHHHHCCCEEE--EcchHHHHHHHCCCeeEEeecccCCchh
Confidence 3458899999999999984 66778888889999888775 344443
No 351
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=46.45 E-value=93 Score=28.12 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=24.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++. +.|.+- ..+|+.|.++|++|+++...
T Consensus 16 k~vlItG-as~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVTG-GNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEeC-CCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 5666664 445555 67889999999999888765
No 352
>PRK06398 aldose dehydrogenase; Validated
Probab=46.25 E-value=1.4e+02 Score=26.93 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=22.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.++ |.+- ..+|+.|.++||+|+++...
T Consensus 7 k~vlItGas-~gIG--~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 7 KVAIVTGGS-QGIG--KAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CEEEEECCC-chHH--HHHHHHHHHCCCeEEEEeCC
Confidence 566666543 3343 35789999999999987643
No 353
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=45.89 E-value=38 Score=31.04 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=56.4
Q ss_pred ccCHHH----HHHHHHHHHhCC--CeEEEEecCccc----cccCC---CCceE-EEcCCC-CCCCCCCCCCCHHHHHHHH
Q 012645 18 QGHINP----LLQFAKRLASKR--VKATLATTHYTV----KSIHA---TTVGV-EPISDG-FDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 18 ~GH~~p----~~~la~~L~~~G--h~V~~~~~~~~~----~~~~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (459)
..-+|| .++.|-.|++++ .+|+.++-.... ..+++ .|.+- +-+.+. +.. .+...
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g------~D~~~----- 99 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQ------ALPQQ----- 99 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccC------cCHHH-----
Confidence 334666 577888888863 699999876433 12332 35532 222211 110 11111
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCc------hhHHHHHHHcCCceEEEccc
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLL------TWALDVARQFGIYGAAMMTN 133 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~------~~~~~~a~~lgiP~v~~~~~ 133 (459)
+...+...+++. +||||++..-+ .-+..+|+.||+|++.+...
T Consensus 100 ---tA~~La~ai~~~-----~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 100 ---TASALAAAAQKA-----GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred ---HHHHHHHHHHHh-----CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 123444555554 69999976544 23788999999999997653
No 354
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=45.78 E-value=74 Score=29.61 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
||||++. +.|-+-. .|.+.|.++||+|.-.+..
T Consensus 1 MriLI~G--asG~lG~--~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITG--ASGFLGS--ALARALKERGYEVIATSRS 33 (286)
T ss_dssp EEEEEET--TTSHHHH--HHHHHHTTTSEEEEEESTT
T ss_pred CEEEEEC--CCCHHHH--HHHHHHhhCCCEEEEeCch
Confidence 7888875 4444443 4568888899887776433
No 355
>PRK08840 replicative DNA helicase; Provisional
Probab=45.56 E-value=1.4e+02 Score=30.06 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCcccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKSI 50 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~~ 50 (459)
+++..-|+.|-..-.+.+|...+ +.|+.|.|++.+...+.+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 67777899999999999999886 469999999988655443
No 356
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=45.51 E-value=1.3e+02 Score=28.21 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec--CccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT--HYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
++|||+++..|. ||=.-.+--+..-.+-..+|.++.+ +...+.+++.|+.+..++..... .
T Consensus 92 ~~~kiavl~Sg~-g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~----------------~ 154 (289)
T PRK13010 92 QRPKVVIMVSKF-DHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDT----------------K 154 (289)
T ss_pred CCeEEEEEEeCC-CccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCccc----------------c
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCc-hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccC
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLL-TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTL 162 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (459)
......+.++++++ ++|+||.-.+. .....+.+.+.-.++-+.++. +
T Consensus 155 ~~~~~~~~~~l~~~-----~~Dlivlagym~il~~~~l~~~~~~iiNiHpSl---------------------------L 202 (289)
T PRK13010 155 AQQEAQILDLIETS-----GAELVVLARYMQVLSDDLSRKLSGRAINIHHSF---------------------------L 202 (289)
T ss_pred cchHHHHHHHHHHh-----CCCEEEEehhhhhCCHHHHhhccCCceeeCccc---------------------------C
Q ss_pred CCCC
Q 012645 163 PGLP 166 (459)
Q Consensus 163 p~~~ 166 (459)
|.++
T Consensus 203 P~f~ 206 (289)
T PRK13010 203 PGFK 206 (289)
T ss_pred CCCC
No 357
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=45.51 E-value=2.1e+02 Score=27.95 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=49.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH-----
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF----- 82 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (459)
.|+++. |+-...+.|++.|.+.|-+|..+........-.+ ...+.+...
T Consensus 272 ~~v~i~-----~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e---------------------~~~~~~~~~~~~v~ 325 (398)
T PF00148_consen 272 KRVAIY-----GDPDRALGLARFLEELGMEVVAVGCDDKSPEDEE---------------------RLRWLLEESDPEVI 325 (398)
T ss_dssp -EEEEE-----SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHH---------------------HHHHHHHTTCSEEE
T ss_pred ceEEEE-----cCchhHHHHHHHHHHcCCeEEEEEEccCchhHHH---------------------HHHHHhhCCCcEEE
Confidence 566663 3346677899999999999888877644321110 000000000
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEcc
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~ 132 (459)
...-...+.+++++. +||+++.+.. ...+++++++|++.+..
T Consensus 326 ~~~~~~~~~~~l~~~-----~pdl~ig~~~---~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 326 IDPDPEEIEELLEEL-----KPDLLIGSSH---ERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp ESCBHHHHHHHHHHH-----T-SEEEESHH---HHHHHHHTT--EEE-SS
T ss_pred eCCCHHHHHHHHHhc-----CCCEEEechh---hHHHHHHhCCCeEEEeC
Confidence 000123445555655 8999999943 77888999999888653
No 358
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=45.50 E-value=75 Score=28.19 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCch---hHHHHHHHcCCceEEEcc
Q 012645 87 SRTLAEVILKYKDSESPVNCIVYDSLLT---WALDVARQFGIYGAAMMT 132 (459)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~Dlvi~D~~~~---~~~~~a~~lgiP~v~~~~ 132 (459)
...++.+++.+.+. .+.+.|.... .+..+|+++|+|++.-..
T Consensus 105 ~~~m~~vl~~l~~~----gl~FvDS~T~~~s~a~~~A~~~gvp~~~rdv 149 (213)
T PF04748_consen 105 REAMRWVLEVLKER----GLFFVDSRTTPRSVAPQVAKELGVPAARRDV 149 (213)
T ss_dssp HHHHHHHHHHHHHT----T-EEEE-S--TT-SHHHHHHHCT--EEE-SE
T ss_pred HHHHHHHHHHHHHc----CCEEEeCCCCcccHHHHHHHHcCCCEEeece
Confidence 34556666766533 7899987773 378999999999998543
No 359
>PRK12743 oxidoreductase; Provisional
Probab=45.46 E-value=99 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=22.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|.++++.++ |.+- ..+++.|.++||+|.++..
T Consensus 3 k~vlItGas-~giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 3 QVAIVTASD-SGIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred CEEEEECCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 456666543 4444 5689999999999987754
No 360
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=45.42 E-value=21 Score=35.03 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCC
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHA 52 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~ 52 (459)
+.+||++...|+.|= .-.+.+.+.|.+.|++|.++.++.-..++..
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 457888887776665 5589999999999999999999877766543
No 361
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=45.35 E-value=55 Score=33.96 Aligned_cols=89 Identities=12% Similarity=0.024 Sum_probs=48.3
Q ss_pred EeCCcccCCH-HHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhhcCCCceEEee--------ecHH--HHhcccCcc
Q 012645 275 SFGSMADIAA-NQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVNSVGETGLVVRW--------CNQF--EVLAHQAVG 342 (459)
Q Consensus 275 s~Gs~~~~~~-~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~v~~~--------~p~~--~lL~~~~~~ 342 (459)
|.||...... ..-+.+++.|++.|.+.++.+.+.. ..+-+.+.+ .++++++.- +-.. -+-..+.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~g-- 78 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPA-- 78 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCe--
Confidence 3444443222 3466677888888888877776543 112222211 123333321 1111 1112333
Q ss_pred ceeccCchh------hHHHhhhcCCeeeccc
Q 012645 343 CFITHCGWN------SILEGLSLGVAVVAVP 367 (459)
Q Consensus 343 ~~I~HGG~g------s~~eal~~GvP~li~P 367 (459)
++++|.|-| .+.+|-..++|+|++.
T Consensus 79 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 79 VCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 377776655 7889999999999985
No 362
>PRK07004 replicative DNA helicase; Provisional
Probab=45.21 E-value=1.1e+02 Score=30.95 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKS 49 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~ 49 (459)
+++...|+.|-..=.+.+|..++ +.|+.|.|++.+...+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~q 256 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ 256 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHH
Confidence 67777799999999999998876 46999999998865544
No 363
>PRK07109 short chain dehydrogenase; Provisional
Probab=44.93 E-value=1.2e+02 Score=28.99 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=22.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|+++++.+ .|-+- ..+|+.|.++|++|+++.-.
T Consensus 9 k~vlITGa-s~gIG--~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 9 QVVVITGA-SAGVG--RATARAFARRGAKVVLLARG 41 (334)
T ss_pred CEEEEECC-CCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 56666644 34333 45788999999999887643
No 364
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=44.76 E-value=1.3e+02 Score=33.28 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccc-cCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKS-IHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKT 84 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (459)
...|+++++.+. -...+++.|.+.|-+|..++....... .+. + ..+. .... .....
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~~~--~--~~~~---~~~~-----------~vi~~ 375 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDFAR--M--KALM---HKDA-----------HIIED 375 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHH--H--HHhc---CCCC-----------EEEEC
Confidence 346788876553 366788899899999977654421110 000 0 0000 0000 00000
Q ss_pred hchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 85 VGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
.-...+.+++++. +||++|.+.. ...+|+++|||++...
T Consensus 376 ~d~~el~~~i~~~-----~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 376 TSTAGLLRVMREK-----MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred CCHHHHHHHHHhc-----CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 0011223344443 8999999753 5678899999999765
No 365
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.64 E-value=26 Score=32.56 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=36.0
Q ss_pred cCccceeccCchhhHHHhhh---cCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 339 QAVGCFITHCGWNSILEGLS---LGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 339 ~~~~~~I~HGG~gs~~eal~---~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
+++ +|.-||-||+++++. .++|++.++... +| -+ . .+.++++.+++.+++++
T Consensus 58 ~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lG-Fl--~---~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 58 VDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LG-FL--T---EVEPEETFFALSRLLEG 112 (277)
T ss_pred CCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CC-cc--c---cCCHHHHHHHHHHHHcC
Confidence 455 999999999999884 356888887421 11 11 1 45577788888887765
No 366
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=44.56 E-value=92 Score=28.15 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=22.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.++ |-+- ..+|+.|+++|++|+++.-.
T Consensus 9 k~vlVtGas-~gIG--~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 9 KVVVVTGAA-QGIG--RGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CEEEEeCCC-chHH--HHHHHHHHHCCCEEEEEeCc
Confidence 566666543 3333 46889999999999887643
No 367
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=44.55 E-value=1.8e+02 Score=29.26 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=59.0
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchH
Q 012645 10 VLVL-TYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSR 88 (459)
Q Consensus 10 il~~-~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (459)
|++. |...-|-..-...|+++|+++|++|..+-+.. +.+ .+.+. ..-.+.+. .+ ++.+. ...+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~--d~~-D~~~~--~~~~g~~~------~~----ld~~~-~~~~ 65 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGP--DYI-DPMFH--TQATGRPS------RN----LDSFF-MSEA 65 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCC--CCC-CHHHH--HHHhCCch------hh----CCccc-CCHH
Confidence 4444 33457888899999999999999999885421 100 00000 00000000 00 00000 1133
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCC-------c-----hhHHHHHHHcCCceEEEccch
Q 012645 89 TLAEVILKYKDSESPVNCIVYDSL-------L-----TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 89 ~~~~l~~~~~~~~~~~Dlvi~D~~-------~-----~~~~~~a~~lgiP~v~~~~~~ 134 (459)
.+.+.++.+. .+.|++|++-. . .....+|+.++.|++.+....
T Consensus 66 ~i~~~~~~~~---~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 66 QIQECFHRHS---KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred HHHHHHHHhc---ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 4444444442 25799995543 1 236789999999999998755
No 368
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=44.45 E-value=98 Score=29.70 Aligned_cols=102 Identities=10% Similarity=-0.000 Sum_probs=56.0
Q ss_pred EEEEEcCCCccC-----HHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 9 HVLVLTYPAQGH-----INPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 9 kil~~~~~~~GH-----~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
-|+|.++.+.|- ...+.+|++.|.++|++|.+.+++..++.+++- ... .+..... .......
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i-~~~--~~~~~~~----------~~~~l~g 248 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEI-LAA--LNTEQQA----------WCRNLAG 248 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHH-HHh--ccccccc----------ceeeccC
Confidence 456666433221 335899999998889999998887655433220 000 0000000 0000000
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEcc
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~ 132 (459)
...-..+..+++ +.|++|+.. .+...+|.-+|+|.|.++.
T Consensus 249 ~~sL~el~ali~-------~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 249 ETQLEQAVILIA-------ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred CCCHHHHHHHHH-------hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 111122233444 468999765 5568899999999999864
No 369
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.31 E-value=69 Score=29.11 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=22.3
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 9 HVLVLTYP--AQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 9 kil~~~~~--~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|+++++.+ +.| +- .++|+.|+++|++|++..-
T Consensus 8 k~~lItGa~~s~G-IG--~a~a~~la~~G~~v~l~~r 41 (256)
T PRK07889 8 KRILVTGVITDSS-IA--FHVARVAQEQGAEVVLTGF 41 (256)
T ss_pred CEEEEeCCCCcch-HH--HHHHHHHHHCCCEEEEecC
Confidence 56667765 333 22 4679999999999988753
No 370
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=44.30 E-value=20 Score=30.58 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=31.0
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHh-CCCeEEEEecCccccccC
Q 012645 9 HVLVLTYPAQGHINP-LLQFAKRLAS-KRVKATLATTHYTVKSIH 51 (459)
Q Consensus 9 kil~~~~~~~GH~~p-~~~la~~L~~-~Gh~V~~~~~~~~~~~~~ 51 (459)
||+..-.|+ ||... .+.+.+.|++ +||+|.++.++...+.++
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 344444454 77766 8899999984 699999999987775544
No 371
>PRK13604 luxD acyl transferase; Provisional
Probab=44.10 E-value=45 Score=31.43 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLAT 42 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~ 42 (459)
+.+.+++++|..++-.-+..+|+.|.++|+.|.-+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 456788888888887779999999999999987663
No 372
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=43.94 E-value=89 Score=28.18 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=54.2
Q ss_pred hhhhhhccC---------CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-CCCchhhhhhcCCCceEE
Q 012645 258 QCMRWLATK---------PEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENE-NKLPVEFVNSVGETGLVV 327 (459)
Q Consensus 258 ~l~~~l~~~---------~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~v~ 327 (459)
++.-|+.++ ...+.|..++=..+....+....+++.+++.+...+..++... ..+.-. +
T Consensus 125 Plevfi~~~~TsV~~~i~~G~G~ilAn~ReiP~~a~e~~~~il~~l~~~g~~Gil~iG~p~~~vlgvp----------v- 193 (236)
T PF01995_consen 125 PLEVFISQGMTSVLDVIETGEGKILANFREIPMSAREKAEEILEKLEKAGFSGILEIGEPNEPVLGVP----------V- 193 (236)
T ss_dssp HHHHCGGG-----------SSSEEEEEEEEEETTTHHHHHHHHHHH---T-TTEEEE--TT--BTTB-------------
T ss_pred HHHHHhcCCCccccccccCCCceEeeeeecCchhHHHHHHHHHHHhhhcccceeEEeCCCCCcccCCc----------c-
Confidence 366777665 4566888888888778889999999999999998888877543 111100 0
Q ss_pred eeecHHHHhcccCccceeccCchhhHHHhhhcCCeeeccc
Q 012645 328 RWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAVVAVP 367 (459)
Q Consensus 328 ~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~li~P 367 (459)
.++--+++.=||.|-++-+.-+|+|+=+-+
T Consensus 194 ----------~~~~~Giv~~GG~Npia~~~E~Gi~i~~~~ 223 (236)
T PF01995_consen 194 ----------EPGMVGIVVIGGLNPIAAAVEAGIPIEIKA 223 (236)
T ss_dssp -----------TTEEEEEEE-TTHHHHHHHHTT---EEEE
T ss_pred ----------CCCeEEEEEEecCcHHHHHHHcCCeeEeee
Confidence 023334677799999999999999986554
No 373
>PRK11823 DNA repair protein RadA; Provisional
Probab=43.87 E-value=2.1e+02 Score=28.75 Aligned_cols=40 Identities=30% Similarity=0.288 Sum_probs=32.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
+++..-++.|-..=++.++..++++|++|.|++.+...+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q 122 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ 122 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH
Confidence 4556667999999999999999888999999998765443
No 374
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.86 E-value=57 Score=27.15 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=31.6
Q ss_pred HHHHHHHhh--cCCCCccEEEeCCCch----------hHHHHHHHcCCceEEEccch
Q 012645 90 LAEVILKYK--DSESPVNCIVYDSLLT----------WALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 90 ~~~l~~~~~--~~~~~~Dlvi~D~~~~----------~~~~~a~~lgiP~v~~~~~~ 134 (459)
+++.+.+++ .-++.||+|++..-+- -+..+|+++|+|+.-.+...
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 355555555 2346999999876431 26678999999999887654
No 375
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=43.84 E-value=57 Score=27.87 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccCccceecc
Q 012645 268 EKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITH 347 (459)
Q Consensus 268 ~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~H 347 (459)
.+.+-.+++|.+. ..+.+.++..|.+++..-.... ....+. .. ...+.+.+++|+.+|+ ++-|
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--~~~~~~-----~~-~~~~~~l~ell~~aDi--v~~~ 98 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--PEEGAD-----EF-GVEYVSLDELLAQADI--VSLH 98 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--HHHHHH-----HT-TEEESSHHHHHHH-SE--EEE-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--hhhhcc-----cc-cceeeehhhhcchhhh--hhhh
Confidence 4558888999876 5677788888988776644321 000011 00 2367788899988888 7776
Q ss_pred CchhhHHHhhhcCCeeeccccc--cchhhHHHHHHHhhhce-EEeeecCCCcccHHHHHHHHHH
Q 012645 348 CGWNSILEGLSLGVAVVAVPQF--SDQPTNAKFVEEVWEVG-VRAKKNRAGIVTGEELNKCVNE 408 (459)
Q Consensus 348 GG~gs~~eal~~GvP~li~P~~--~DQ~~na~rv~~~~G~G-~~~~~~~~~~~~~~~l~~~i~~ 408 (459)
. |.. ..+..|+..++++ +=| ..++..+++-++++.|.+++++
T Consensus 99 ~------------------plt~~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 99 L------------------PLTPETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp S------------------SSSTTTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred h------------------ccccccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHHhh
Confidence 5 443 3567788888888 766 4455444456777777777653
No 376
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.82 E-value=1.2e+02 Score=29.60 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-------CeEEEEecCc
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKR-------VKATLATTHY 45 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~G-------h~V~~~~~~~ 45 (459)
..+|||.++..|++| .+||..|.+.| |+|++.+...
T Consensus 9 ~~~~ki~ViGaG~wG-----tAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 9 CGPLKVSVIGSGNWG-----SAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred cCCCeEEEECCCHHH-----HHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 356899999999998 57899999887 8999998765
No 377
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=43.72 E-value=38 Score=31.11 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=32.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|+|.+..=|+-|-..-.+.||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788886689999999999999999999999887444
No 378
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=43.63 E-value=1.4e+02 Score=27.51 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc-----cccCC-CCceEEEcCCCCCCCCCCCCCCHHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV-----KSIHA-TTVGVEPISDGFDEGGFKQAPSVKAYLE 80 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~-----~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (459)
+++.+++|..|.|= - .++|+.|+++||+|+++.-...+ +.++. .++....++-++.+.
T Consensus 5 ~~~~~lITGASsGI-G--~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~------------- 68 (265)
T COG0300 5 KGKTALITGASSGI-G--AELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDP------------- 68 (265)
T ss_pred CCcEEEEECCCchH-H--HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCCh-------------
Confidence 45666777554442 1 57899999999999999865321 22222 456666665433331
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCccEEEeCCCc
Q 012645 81 SFKTVGSRTLAEVILKYKDSESPVNCIVYDSLL 113 (459)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~ 113 (459)
+.+..+.+.+.......|++|...-+
T Consensus 69 -------~~~~~l~~~l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 69 -------EALERLEDELKERGGPIDVLVNNAGF 94 (265)
T ss_pred -------hHHHHHHHHHHhcCCcccEEEECCCc
Confidence 12223333333333478999987644
No 379
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=43.60 E-value=2.2e+02 Score=24.80 Aligned_cols=101 Identities=8% Similarity=0.112 Sum_probs=53.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCc-c---ccccCCCCceEEEcC-CCCCCCCCCCCCCHHHHHH
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHY-T---VKSIHATTVGVEPIS-DGFDEGGFKQAPSVKAYLE 80 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~-~---~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (459)
+||+++.+|+.+-+.-.+ ++...- ..+|.++.+.. . .+++++.|+....+. ..++.
T Consensus 1 ~ki~VlaSG~GSNlqaii---da~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~-------------- 63 (200)
T COG0299 1 KKIAVLASGNGSNLQAII---DAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPS-------------- 63 (200)
T ss_pred CeEEEEEeCCcccHHHHH---HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCC--------------
Confidence 578888888877766544 444321 35677766654 2 244555788776653 22221
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCccEEEeCCCc-hhHHHHHHHcCCceEEEcc
Q 012645 81 SFKTVGSRTLAEVILKYKDSESPVNCIVYDSLL-TWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~ 132 (459)
+......+.+.+++ . +||+|+.-.+. ..+..+-..+.=..+-+.|
T Consensus 64 --r~~~d~~l~~~l~~---~--~~dlvvLAGyMrIL~~~fl~~~~grIlNIHP 109 (200)
T COG0299 64 --REAFDRALVEALDE---Y--GPDLVVLAGYMRILGPEFLSRFEGRILNIHP 109 (200)
T ss_pred --HHHHHHHHHHHHHh---c--CCCEEEEcchHHHcCHHHHHHhhcceEecCc
Confidence 11112233333343 3 89999977655 3344444444334444443
No 380
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=43.20 E-value=1.4e+02 Score=30.62 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.2
Q ss_pred CccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 103 PVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 103 ~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
+||+||.+. ....+|+++|||++.++
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 899999885 36678999999999875
No 381
>PRK06321 replicative DNA helicase; Provisional
Probab=43.17 E-value=1.5e+02 Score=29.98 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=32.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKS 49 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~ 49 (459)
|++..-|+.|-..-.+.+|...+ +.|..|.|++-+.....
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 67777899999999999999886 46999999998865543
No 382
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=43.11 E-value=70 Score=31.16 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK 48 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 48 (459)
+++..-|+.|--.=++.+|..+.+.|..|.|++.+...+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~ 123 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE 123 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHH
Confidence 455556799999999999999999999999998865433
No 383
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=43.07 E-value=1.2e+02 Score=30.46 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=51.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhc
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVG 86 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (459)
..|+.+.. +-.-.+.+++.|.+.|-+|..+......+..++ ++ ..... ..+..
T Consensus 311 gkrvai~~-----~~~~~~~la~~L~elG~~v~~~~~~~~~~~~~~-------~~----~~~i~-~~D~~---------- 363 (455)
T PRK14476 311 GKRVAIAA-----EPDLLLALGSFLAEMGAEIVAAVTTTKSPALED-------LP----AEEVL-IGDLE---------- 363 (455)
T ss_pred CCEEEEEe-----CHHHHHHHHHHHHHCCCEEEEEEeCCCcHHHHh-------CC----cCcEE-eCCHH----------
Confidence 35676664 334778899999999999988877643222211 11 00000 01111
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 87 SRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
.+.+.++ ++|++|.+.. ...+|+++|+|++.+.
T Consensus 364 --~le~~~~-------~~dliig~s~---~~~~a~~~gip~~~~g 396 (455)
T PRK14476 364 --DLEELAE-------GADLLITNSH---GRQAAERLGIPLLRVG 396 (455)
T ss_pred --HHHHhcc-------CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 1122211 6899999954 5778999999999864
No 384
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=42.81 E-value=1.1e+02 Score=26.21 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=56.3
Q ss_pred EEEEcCCCccC----HH----HHHHHHHHHHhCCCeEEEEecCcccc-----ccCCCCceEEEc-CC-CCCCCCCCCCCC
Q 012645 10 VLVLTYPAQGH----IN----PLLQFAKRLASKRVKATLATTHYTVK-----SIHATTVGVEPI-SD-GFDEGGFKQAPS 74 (459)
Q Consensus 10 il~~~~~~~GH----~~----p~~~la~~L~~~Gh~V~~~~~~~~~~-----~~~~~g~~~~~~-~~-~~~~~~~~~~~~ 74 (459)
|+++.--..|. ++ -.+..|+.|.+.|-+|+.++...... .....|.+-+-. .+ .+.. .+
T Consensus 2 ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~~~~~v~~v~~G~~~~~~~~~~~~~~Gad~v~~~~~~~~~~------~~ 75 (181)
T cd01985 2 ILVLVEHVPDTAELVLNPLDLEAVEAALRLKEYGGEVTALVIGPPAAEVALREALAMGADKVLLVEDPALAG------YD 75 (181)
T ss_pred EEEEEEEEcCCCccccCHhhHHHHHHHHHHhhcCCeEEEEEECChHHHHHHHHHHHhCCCEEEEEecCcccC------CC
Confidence 44444444555 56 46778899865445677666543221 122346543332 11 0000 01
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCch---hHHHHHHHcCCceEEEcc
Q 012645 75 VKAYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT---WALDVARQFGIYGAAMMT 132 (459)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~---~~~~~a~~lgiP~v~~~~ 132 (459)
... ....+.+++++. +||+|++-.... .+..+|.+||.|++.-..
T Consensus 76 ~~~--------~a~~l~~~i~~~-----~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 76 PEA--------TAKALAALIKKE-----KPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred hHH--------HHHHHHHHHHHh-----CCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 111 122334444443 799999776553 378899999999988543
No 385
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=42.69 E-value=69 Score=30.75 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=61.1
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcCCC-----CCCCC--CCCCCCHHH
Q 012645 7 RVHVLVLTYP--AQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPISDG-----FDEGG--FKQAPSVKA 77 (459)
Q Consensus 7 ~~kil~~~~~--~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~--~~~~~~~~~ 77 (459)
++||.+++.| +.|==+-...+.+.+...|.+|.-+-.. +.-.++.. +.++... +..+. ....+..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~G-y~GL~~~~---i~~l~~~~v~~~~~~GGT~lgssR~~-- 75 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNG-YLGLLEGD---IKPLTREDVDDLINRGGTFLGSARFP-- 75 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecc-hhhhcCCc---ceeccccchhHHHhcCCeEEeeCCCC--
Confidence 4689888876 6676777888999999999998766543 33333332 2222100 00000 0000000
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCccEEE---eCCCchhHHHHHHHcCCceEEE
Q 012645 78 YLESFKTVGSRTLAEVILKYKDSESPVNCIV---YDSLLTWALDVARQFGIYGAAM 130 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi---~D~~~~~~~~~a~~lgiP~v~~ 130 (459)
.+. ..+.....++.+.+. +.|.+| -|.....+..++++.++|+|.+
T Consensus 76 ---~~~--~~e~~~~~~~~l~~~--gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 76 ---EFK--TEEGRKVAAENLKKL--GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred ---Ccc--cHHHHHHHHHHHHHc--CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 000 011111333334333 677766 4666677899999999999984
No 386
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=42.56 E-value=61 Score=31.13 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEec
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRV-KATLATT 43 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh-~V~~~~~ 43 (459)
.++.||+++..|+.| -.+|+.|++.|. +++++=.
T Consensus 22 L~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 22 LREKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeC
Confidence 345789999999888 567899999998 6666654
No 387
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=42.55 E-value=1.2e+02 Score=30.22 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
||||++..|++.| +|+++|++.|++|.++-.
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 7999998888777 578899988988877744
No 388
>PRK05595 replicative DNA helicase; Provisional
Probab=42.43 E-value=1.3e+02 Score=30.17 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=32.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKS 49 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~ 49 (459)
+++...|+.|-..=.+.+|..++ ++|+.|.|++.+...+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 56677789999999999998765 57999999998865443
No 389
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=42.42 E-value=72 Score=25.78 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCc-hhhhhhcCCCceEEeeecHH-HHhcccCccceeccCchhhHHHhhhc------
Q 012645 288 DEIARGLKASEKPFLWVVKENENKLP-VEFVNSVGETGLVVRWCNQF-EVLAHQAVGCFITHCGWNSILEGLSL------ 359 (459)
Q Consensus 288 ~~i~~a~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~v~~~~p~~-~lL~~~~~~~~I~HGG~gs~~eal~~------ 359 (459)
..+.++..+.+-+++=++.... .+ ++..+..-.....++..... .+|-..+-..++.-||.||.-|....
T Consensus 2 ~a~~~ga~~~gG~viGi~p~~~--~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l 79 (133)
T PF03641_consen 2 GAVAKGAKEAGGRVIGIIPEFL--FPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQL 79 (133)
T ss_dssp HHHHHHHHHTTTTEEEEEETTG--TTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCeEEEEecCcc--ccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhh
Confidence 3455666667777665554321 11 11000011222334444433 44443343457788999999887432
Q ss_pred ----CCeeeccc
Q 012645 360 ----GVAVVAVP 367 (459)
Q Consensus 360 ----GvP~li~P 367 (459)
.+|++++-
T Consensus 80 ~~~~~~Piil~~ 91 (133)
T PF03641_consen 80 GRHNKVPIILLN 91 (133)
T ss_dssp TSSTS-EEEEEE
T ss_pred ccccCCCEEEeC
Confidence 34988876
No 390
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=42.35 E-value=1.1e+02 Score=29.84 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=56.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEecC-ccccccCCC---CceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKR-VKATLATTH-YTVKSIHAT---TVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~G-h~V~~~~~~-~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
+||||++..|.-|+ .+|.-|+++| ++|++++-. .....+... ++++..++.. +
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~----------d------- 58 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA----------D------- 58 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc----------C-------
Confidence 37888888766665 4788999999 999999875 444444432 4666655311 0
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCch---hHHHHHHHcCCceEEEccch
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT---WALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~---~~~~~a~~lgiP~v~~~~~~ 134 (459)
.+.+.++++ ++|+||.=...+ -...+|-+.|++++-++...
T Consensus 59 -----~~al~~li~-------~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 59 -----VDALVALIK-------DFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred -----hHHHHHHHh-------cCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCC
Confidence 123334444 347776433222 23446667788888776544
No 391
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=42.30 E-value=1e+02 Score=29.71 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.8
Q ss_pred ccCccceeccCchhh---HHHhhhcCCeeeccc
Q 012645 338 HQAVGCFITHCGWNS---ILEGLSLGVAVVAVP 367 (459)
Q Consensus 338 ~~~~~~~I~HGG~gs---~~eal~~GvP~li~P 367 (459)
.|++ +|++||+-| +..|...|+|.++.=
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 4666 999999986 899999999997754
No 392
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=42.27 E-value=51 Score=30.92 Aligned_cols=51 Identities=10% Similarity=-0.123 Sum_probs=33.3
Q ss_pred CcEEEEEcCC-CccCHH---HHHHHHHHHHhCCCeEEEEecC-ccccccCCCCceE
Q 012645 7 RVHVLVLTYP-AQGHIN---PLLQFAKRLASKRVKATLATTH-YTVKSIHATTVGV 57 (459)
Q Consensus 7 ~~kil~~~~~-~~GH~~---p~~~la~~L~~~Gh~V~~~~~~-~~~~~~~~~g~~~ 57 (459)
++||.+++.+ +.=|-. -...+.++|.++||+|.++... .....+...++++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~ 59 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDR 59 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCE
Confidence 4589888854 333444 5688999999999999998654 3333343334443
No 393
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=42.10 E-value=3.9e+02 Score=27.19 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=71.9
Q ss_pred ceEEeeecHHH---HhcccCccceec---cCchhhHH-HhhhcCC----eeeccccccchhhHHHHHHHhhhceEEeeec
Q 012645 324 GLVVRWCNQFE---VLAHQAVGCFIT---HCGWNSIL-EGLSLGV----AVVAVPQFSDQPTNAKFVEEVWEVGVRAKKN 392 (459)
Q Consensus 324 v~v~~~~p~~~---lL~~~~~~~~I~---HGG~gs~~-eal~~Gv----P~li~P~~~DQ~~na~rv~~~~G~G~~~~~~ 392 (459)
+++.+.+|+.+ +++.++| ++. .-|+|.++ |.++++. |+|+--+.+ ..+.+ .-++.++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-------aa~~l-~~AllVN-- 431 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-------AAVEL-KGALLTN-- 431 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-------chhhc-CCCEEEC--
Confidence 34557788775 5666777 443 45888554 9999887 544443321 11444 4455555
Q ss_pred CCCcccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 012645 393 RAGIVTGEELNKCVNEVMDGERSQKIKRNVSKWREFAKKAVSAGGSSDKNIDEFVVRLLKA 453 (459)
Q Consensus 393 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~s~~~~~~~~~~l~~~ 453 (459)
-.+.+.++++|.+.|+.+.. +=++|.+++.+.+.. .++..=.+.++++|...
T Consensus 432 ---P~d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 432 ---PYDPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 57899999999999998632 445666666666654 56677788888888653
No 394
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=42.04 E-value=1.2e+02 Score=26.03 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=54.6
Q ss_pred hhhhhhhccCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCch-hhhhhcCCCceEEeeecHH-H
Q 012645 257 DQCMRWLATKPEKSVIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPV-EFVNSVGETGLVVRWCNQF-E 334 (459)
Q Consensus 257 ~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~v~v~~~~p~~-~ 334 (459)
.++-++|.... ..+|+-|. ....+..+.++....+-.++=++... +++ ...+......++++..... .
T Consensus 22 ~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~---l~~~~~~~~~~~~~i~~~~~~~Rk~ 91 (178)
T TIGR00730 22 AELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSG---LFSGEVVHQNLTELIEVNGMHERKA 91 (178)
T ss_pred HHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchh---hhhhhccCCCCCceEEECCHHHHHH
Confidence 44667786653 45555554 23467778887777776666443211 110 0000111223344444333 4
Q ss_pred HhcccCccceeccCchhhHHHhhh---------cCCeeeccc
Q 012645 335 VLAHQAVGCFITHCGWNSILEGLS---------LGVAVVAVP 367 (459)
Q Consensus 335 lL~~~~~~~~I~HGG~gs~~eal~---------~GvP~li~P 367 (459)
+|-..+-..++--||.||.-|.+. +.+|++++=
T Consensus 92 ~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 92 MMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 444334445677799999988743 489988874
No 395
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=42.03 E-value=50 Score=30.98 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEe
Q 012645 5 RERVHVLVLTYPAQG-H---INPLLQFAKRLASKRVKATLAT 42 (459)
Q Consensus 5 ~~~~kil~~~~~~~G-H---~~p~~~la~~L~~~Gh~V~~~~ 42 (459)
|+|+||.++..|.-. | +.....++++|.+.||+|.++.
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 457899988876333 3 3446678999999999998764
No 396
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=42.02 E-value=42 Score=33.18 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=32.1
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 7 RVHVLVLTY--PAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 7 ~~kil~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+|+|+.+.. |+-|-..-.+.||..|+.+|++|.++=.+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 567766665 89999999999999999999999988443
No 397
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=41.97 E-value=43 Score=30.79 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=31.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|+|.+..=|+-|-..-.+.||.+|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 678888668999999999999999999999998843
No 398
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=41.93 E-value=28 Score=32.92 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=41.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPIS 61 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~ 61 (459)
|||.++..|+.|=+ +|-.|++.||+|++..-++..+.+.+.|+......
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~ 49 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEG 49 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCC
Confidence 78999999988854 68899999999999999888777877788887664
No 399
>PRK06921 hypothetical protein; Provisional
Probab=41.93 E-value=2.8e+02 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK-RVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~ 44 (459)
..++|+..++.|=..=..+||++|.++ |+.|.|++..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV 155 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH
Confidence 457777777888777788899999887 9999888753
No 400
>PRK05876 short chain dehydrogenase; Provisional
Probab=41.83 E-value=1.3e+02 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
.|.++++.++ |.+- ..+|+.|+++|++|+++..
T Consensus 6 ~k~vlVTGas-~gIG--~ala~~La~~G~~Vv~~~r 38 (275)
T PRK05876 6 GRGAVITGGA-SGIG--LATGTEFARRGARVVLGDV 38 (275)
T ss_pred CCEEEEeCCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 3566777543 5554 5679999999999987754
No 401
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=41.78 E-value=1.3e+02 Score=27.48 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=23.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.++. .+- ..+++.|.++|++|+++...
T Consensus 11 k~vlVtGas~-giG--~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 11 KVAVITGGGG-VLG--GAMAKELARAGAKVAILDRN 43 (278)
T ss_pred CEEEEeCCCc-hHH--HHHHHHHHHCCCEEEEEeCC
Confidence 5666765543 232 67889999999999887653
No 402
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=41.73 E-value=5.4 Score=21.35 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.0
Q ss_pred chhhHHHhhhcCCeeec
Q 012645 349 GWNSILEGLSLGVAVVA 365 (459)
Q Consensus 349 G~gs~~eal~~GvP~li 365 (459)
|.|+++..|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 78999999999998765
No 403
>PRK10037 cell division protein; Provisional
Probab=41.65 E-value=38 Score=30.78 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=29.5
Q ss_pred cEEE-EEcC-CCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVL-VLTY-PAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil-~~~~-~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|||+ +... |+-|-..-.+.||..|+++|++|.++=.+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3444 4443 79999999999999999999999998443
No 404
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=41.47 E-value=31 Score=31.08 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=34.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEecCccccccCCC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASK--RVKATLATTHYTVKSIHAT 53 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~ 53 (459)
||++.-.|+.+=+.-.+.+.+.|+++ ||+|.++.++.-.+++...
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 34544445444457899999999999 9999999999877766654
No 405
>PRK08760 replicative DNA helicase; Provisional
Probab=41.44 E-value=1.2e+02 Score=30.64 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=33.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLAS-KRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~~~~~~ 49 (459)
=+++..-|+.|-..=.+.+|...+. .|+.|.|++.+...+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 3677778999999999999988864 5999999998865543
No 406
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.41 E-value=2.3e+02 Score=26.38 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.9
Q ss_pred CCccCHHHHHHHHHHHHh-CCCeEEEEecC
Q 012645 16 PAQGHINPLLQFAKRLAS-KRVKATLATTH 44 (459)
Q Consensus 16 ~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~ 44 (459)
--+|++.-.-+||+.|++ +||+|.+-+.+
T Consensus 12 DNyGDIGV~wRLARql~re~G~~VrLWvDd 41 (370)
T COG4394 12 DNYGDIGVAWRLARQLKREHGWQVRLWVDD 41 (370)
T ss_pred cccchhHHHHHHHHHHHHHhCceeeeecCC
Confidence 468999999999999976 79999998876
No 407
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=41.37 E-value=16 Score=36.66 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=41.2
Q ss_pred hHHHhhhcCCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcChhhHHHHHHHHH
Q 012645 352 SILEGLSLGVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDGERSQKIKRNVSK 424 (459)
Q Consensus 352 s~~eal~~GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 424 (459)
++.||+++|.|++..=- -.-+..++.. --|..+++. .-....+.+++.++..|+ +++.++.+
T Consensus 381 v~IEAMa~glPvvAt~~----GGP~EiV~~~-~tG~l~dp~---~e~~~~~a~~~~kl~~~p---~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNN----GGPAEIVVHG-VTGLLIDPG---QEAVAELADALLKLRRDP---ELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecC----CCceEEEEcC-CcceeeCCc---hHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 68899999999987643 2233333334 445555543 344447999999999999 66655543
No 408
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=41.33 E-value=66 Score=26.61 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCeEEEEecCcccc---ccCCCCce--E--EEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHH
Q 012645 24 LLQFAKRLASKRVKATLATTHYTVK---SIHATTVG--V--EPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAEVILK 96 (459)
Q Consensus 24 ~~~la~~L~~~Gh~V~~~~~~~~~~---~~~~~g~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (459)
..++-+.|+++|+.+.++|...... .++..|+. | +-..+.... . +-....+..++++
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~-----~-----------Kp~~~~~~~~~~~ 145 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGS-----R-----------KPDPDAYRRALEK 145 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSS-----S-----------TTSHHHHHHHHHH
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhh-----h-----------hhHHHHHHHHHHH
Confidence 4567888888999999999875432 23334544 1 111111110 0 0111233444444
Q ss_pred hhcCCCCccEEEeCCCchhHHHHHHHcCCceEEE
Q 012645 97 YKDSESPVNCIVYDSLLTWALDVARQFGIYGAAM 130 (459)
Q Consensus 97 ~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~ 130 (459)
+.-. +-++++.|... .-..+|+..|++.|.+
T Consensus 146 ~~~~--p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 146 LGIP--PEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HTSS--GGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred cCCC--cceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 4222 44777777665 6899999999999864
No 409
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.28 E-value=4.1e+02 Score=28.62 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 7 RVHVLVLTY--PAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 7 ~~kil~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+.|++.++. |+-|-..=.+.||..|+..|++|.++-.+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 346766665 57788888899999999999999998654
No 410
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.25 E-value=30 Score=35.91 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=38.0
Q ss_pred ccceeccCchhhHHHhhhc----CCeeeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHhcC
Q 012645 341 VGCFITHCGWNSILEGLSL----GVAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVMDG 412 (459)
Q Consensus 341 ~~~~I~HGG~gs~~eal~~----GvP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 412 (459)
+.++|+-||=||++.+.+. ++|++.+-. |...-.. ..+.+++.+++.+++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~-----------------G~lGFL~---~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINM-----------------GTVGFLT---EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------------CCCCcCc---ccCHHHHHHHHHHHHcC
Confidence 3449999999999999774 778887743 2222222 57778888899888876
No 411
>PRK08303 short chain dehydrogenase; Provisional
Probab=41.20 E-value=1.2e+02 Score=28.63 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=24.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|+++++.++.| +- .++|++|+++|++|+++.-
T Consensus 9 k~~lITGgs~G-IG--~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 9 KVALVAGATRG-AG--RGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CEEEEeCCCch-HH--HHHHHHHHHCCCEEEEEec
Confidence 67788876654 22 7889999999999988754
No 412
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=41.09 E-value=1.5e+02 Score=29.09 Aligned_cols=34 Identities=3% Similarity=-0.112 Sum_probs=24.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
.|.++++.++. .+.-..++|++| ++|.+|..++.
T Consensus 41 gK~aLVTGaSs-GIGlA~~IA~al-~~GA~Vi~v~~ 74 (398)
T PRK13656 41 PKKVLVIGASS-GYGLASRIAAAF-GAGADTLGVFF 74 (398)
T ss_pred CCEEEEECCCc-hHhHHHHHHHHH-HcCCeEEEEec
Confidence 46777776655 455556689999 99999887764
No 413
>PRK04148 hypothetical protein; Provisional
Probab=41.00 E-value=53 Score=26.66 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+.+||+.+..| .| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 34789998888 54 24578888999999987543
No 414
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.91 E-value=1.6e+02 Score=26.49 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=24.3
Q ss_pred cEEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTYPAQ-GHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~~~~-GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
.|.++++.++. |-+-- .+|+.|.++|++|+++..
T Consensus 5 ~k~vlItGas~~~giG~--~la~~l~~~G~~vi~~~r 39 (256)
T PRK12748 5 KKIALVTGASRLNGIGA--AVCRRLAAKGIDIFFTYW 39 (256)
T ss_pred CcEEEEeCCCCCCCHHH--HHHHHHHHcCCcEEEEcC
Confidence 35667776652 45543 489999999999988754
No 415
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=40.83 E-value=1.9e+02 Score=26.98 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec--CccccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHH
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT--HYTVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFK 83 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (459)
+++||+++..+. ||=.-.+--+..=-+-..+|.++.+ +.....+++.|+.+..++.. +.-+
T Consensus 83 ~~~ki~vl~Sg~-g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~----------------~~~~ 145 (280)
T TIGR00655 83 KLKRVAILVSKE-DHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPAT----------------KDNR 145 (280)
T ss_pred CCcEEEEEEcCC-ChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCC----------------Ccch
Q ss_pred HhchHHHHHHHHHhhcCCCCccEEEeCCCc-hhHHHHHHHcCCceEEEccchHHHHHHHHHhhccCCCCCCCCCCCcccC
Q 012645 84 TVGSRTLAEVILKYKDSESPVNCIVYDSLL-TWALDVARQFGIYGAAMMTNSASVCSMYWQINHGLLTLPVNQETVPLTL 162 (459)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~-~~~~~~a~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (459)
......+.+++++. ++|+||.-.+. .....+.+.+.-.++-+.++. +
T Consensus 146 ~~~e~~~~~~l~~~-----~~Dlivlagym~il~~~~l~~~~~~iINiHpSL---------------------------L 193 (280)
T TIGR00655 146 VEHEKRQLELLKQY-----QVDLVVLAKYMQILSPDFVKRYPNKIINIHHSF---------------------------L 193 (280)
T ss_pred hhhHHHHHHHHHHh-----CCCEEEEeCchhhCCHHHHhhccCCEEEecCCc---------------------------C
Q ss_pred CCCC
Q 012645 163 PGLP 166 (459)
Q Consensus 163 p~~~ 166 (459)
|.++
T Consensus 194 P~f~ 197 (280)
T TIGR00655 194 PAFI 197 (280)
T ss_pred CCCC
No 416
>PRK09739 hypothetical protein; Provisional
Probab=40.80 E-value=68 Score=27.95 Aligned_cols=38 Identities=3% Similarity=-0.003 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCccC--HHH-HHHHHHHHHhCCCeEEEEe
Q 012645 5 RERVHVLVLTYPAQGH--INP-LLQFAKRLASKRVKATLAT 42 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH--~~p-~~~la~~L~~~Gh~V~~~~ 42 (459)
|+.|||+++......+ -.- .-.+++.|.++||+|+..-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3457888876543332 222 3345667777899998664
No 417
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=40.77 E-value=45 Score=32.41 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
++|||++. |+.|.+-. .|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfIG~--~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFIAS--HIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHHHH--HHHHHHHhCCCEEEEEEe
Confidence 46888876 66676664 578999999999998874
No 418
>PRK08116 hypothetical protein; Validated
Probab=40.75 E-value=2.1e+02 Score=26.32 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=27.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
++|...++.|-..=..++|++|.++|+.|.|++.+.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 666666777777777788999988888888877554
No 419
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=40.66 E-value=35 Score=26.81 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCccccccCC
Q 012645 21 INPLLQFAKRLASKRVKATLATTHYTVKSIHA 52 (459)
Q Consensus 21 ~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~ 52 (459)
+.|++.|.-.+.-+||++++..+..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 56788888888899999999999999886654
No 420
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=40.50 E-value=87 Score=28.14 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCccC----HHHHHHHHHHHHhCCCeEEEEecCcc--ccccCC--CCce--EEEcCCCCCCCCCCCCCCHH
Q 012645 7 RVHVLVLTYPAQGH----INPLLQFAKRLASKRVKATLATTHYT--VKSIHA--TTVG--VEPISDGFDEGGFKQAPSVK 76 (459)
Q Consensus 7 ~~kil~~~~~~~GH----~~p~~~la~~L~~~Gh~V~~~~~~~~--~~~~~~--~g~~--~~~~~~~~~~~~~~~~~~~~ 76 (459)
+..|+|.+..+... ..-+..|++.|.++|++|.+++++.. .+.+.. .+.. .+.+... .+
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-- 173 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGK---------TS-- 173 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTT---------S---
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCC---------CC--
Confidence 34566666553321 23368999999999999988888766 222211 1211 2222100 00
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEccch
Q 012645 77 AYLESFKTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~~~ 134 (459)
-..+..+++ ..|++|+.. .+...+|.-+|+|.+.++...
T Consensus 174 ----------l~e~~ali~-------~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 174 ----------LRELAALIS-------RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ----------HHHHHHHHH-------TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ----------HHHHHHHHh-------cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 012233444 569999654 557889999999999987543
No 421
>PRK13695 putative NTPase; Provisional
Probab=40.42 E-value=1.9e+02 Score=24.42 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=34.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPI 60 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~ 60 (459)
|||++...++.|=-.=+..++..|...|+.+.-+............++....+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~ 53 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDL 53 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEc
Confidence 78999988888888888888888988898865333332222222235555443
No 422
>PRK07856 short chain dehydrogenase; Provisional
Probab=40.38 E-value=1.6e+02 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=22.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.++.| +- ..+++.|+++|++|+++...
T Consensus 7 k~~lItGas~g-IG--~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRG-IG--AGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCch-HH--HHHHHHHHHCCCEEEEEeCC
Confidence 55666655432 32 46788999999999888654
No 423
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=40.34 E-value=1.1e+02 Score=26.51 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=21.5
Q ss_pred cEEEEEcCCCcc--CHHHHHHHHHHHHhC
Q 012645 8 VHVLVLTYPAQG--HINPLLQFAKRLASK 34 (459)
Q Consensus 8 ~kil~~~~~~~G--H~~p~~~la~~L~~~ 34 (459)
||||+..|+-++ ..||...++++|...
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~ 29 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKL 29 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhcccc
Confidence 678888887554 479999999999654
No 424
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.30 E-value=56 Score=28.60 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT 46 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 46 (459)
+.||.+-..++-|-.+.|+.=|+.|+++|.+|++..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 5789999999999999999999999999999998876543
No 425
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=30 Score=34.75 Aligned_cols=34 Identities=24% Similarity=0.161 Sum_probs=27.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT 46 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 46 (459)
|||+++..|-.| +.-|.+|+++||+||++-....
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccCc
Confidence 688888777555 7789999999999999876543
No 426
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.23 E-value=42 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=20.5
Q ss_pred CccEEEeCCCchh--HHHHHHHcCCceEEEc
Q 012645 103 PVNCIVYDSLLTW--ALDVARQFGIYGAAMM 131 (459)
Q Consensus 103 ~~Dlvi~D~~~~~--~~~~a~~lgiP~v~~~ 131 (459)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998654332 3344568899998874
No 427
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=40.09 E-value=77 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccC--HHHHHHHHHHHHhC
Q 012645 8 VHVLVLTYPAQGH--INPLLQFAKRLASK 34 (459)
Q Consensus 8 ~kil~~~~~~~GH--~~p~~~la~~L~~~ 34 (459)
||||+..|+-+|. .||...++++|...
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 7899988875554 99999999999553
No 428
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=40.03 E-value=1.1e+02 Score=32.54 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE-EecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATL-ATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~-~~~~ 44 (459)
|||+|+..+..| ++.-++|.+.||+|.. ++.+
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLAAGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCcEEEEEeCC
Confidence 789998655443 3344778889999884 4444
No 429
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.96 E-value=61 Score=25.89 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=32.1
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEecCcccccc
Q 012645 8 VHVLVLTYP-AQGHINPLLQFAKRLASKRVKATLATTHYTVKSI 50 (459)
Q Consensus 8 ~kil~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~ 50 (459)
|-++++.+| ..-.+.-.+-+...|..+|.+|++++++.....+
T Consensus 4 kvlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 4 KVLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred eEEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheee
Confidence 435556666 5556666788899999999999999998655544
No 430
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=39.95 E-value=46 Score=31.50 Aligned_cols=42 Identities=5% Similarity=-0.063 Sum_probs=32.0
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 8 VHVLVLTYP---AQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 8 ~kil~~~~~---~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
|||+|+.-| -.-+..-...|.++.++|||+|.++.+.+..-.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~ 45 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVV 45 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEE
Confidence 677777754 233445688999999999999999999876543
No 431
>PLN02327 CTP synthase
Probab=39.91 E-value=51 Score=33.72 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=36.1
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 8 VHVLVLTYP---AQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 8 ~kil~~~~~---~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
||.+|+|.| +.|-=.-...|+..|++||++|+..--+.+...
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNv 45 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNT 45 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeeccccccc
Confidence 589999987 677778889999999999999999988777653
No 432
>PRK08628 short chain dehydrogenase; Provisional
Probab=39.85 E-value=1.4e+02 Score=26.81 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=26.2
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
|...++.. .++++.++ |.+- ..+|+.|.++|++|++++...
T Consensus 1 ~~~~l~~~-~ilItGas-ggiG--~~la~~l~~~G~~v~~~~r~~ 41 (258)
T PRK08628 1 MDLNLKDK-VVIVTGGA-SGIG--AAISLRLAEEGAIPVIFGRSA 41 (258)
T ss_pred CCCCcCCC-EEEEeCCC-ChHH--HHHHHHHHHcCCcEEEEcCCh
Confidence 44444444 45555443 4443 568899999999998886543
No 433
>CHL00194 ycf39 Ycf39; Provisional
Probab=39.74 E-value=46 Score=31.47 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|||+++ |+.|.+-.. ++++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG~~--lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLGRQ--IVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHHHH--HHHHHHHCCCeEEEEEcC
Confidence 566664 677766654 678899999999998754
No 434
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=39.64 E-value=3.4e+02 Score=25.85 Aligned_cols=99 Identities=9% Similarity=0.062 Sum_probs=53.6
Q ss_pred EEEEEcCCCcc----CHHHHHHHHHHHHhCCCeEEEEecCcccc--ccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHH
Q 012645 9 HVLVLTYPAQG----HINPLLQFAKRLASKRVKATLATTHYTVK--SIHATTVGVEPISDGFDEGGFKQAPSVKAYLESF 82 (459)
Q Consensus 9 kil~~~~~~~G----H~~p~~~la~~L~~~Gh~V~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
.|++.++.+.. -..-+..|++.|.++|++|.+++.+...+ .+++ +. ...... . .....
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~--i~-----~~~~~~------~---~~~l~ 246 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNE--IA-----QGCQTP------R---VTSLA 246 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHH--HH-----hhCCCC------c---ccccC
Confidence 35555543321 13457899999988899999887754211 1111 00 000000 0 00000
Q ss_pred HHhchHHHHHHHHHhhcCCCCccEEEeCCCchhHHHHHHHcCCceEEEcc
Q 012645 83 KTVGSRTLAEVILKYKDSESPVNCIVYDSLLTWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~~ 132 (459)
....-..+..+++ +.|++|+.. .+...+|.-+|+|.|.++.
T Consensus 247 g~~sL~el~ali~-------~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 247 GKLTLPQLAALID-------HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred CCCCHHHHHHHHH-------hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 0111122333444 469999774 5678899999999999864
No 435
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=39.63 E-value=55 Score=27.71 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCceEEEcC
Q 012645 15 YPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIHATTVGVEPIS 61 (459)
Q Consensus 15 ~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~ 61 (459)
.|+.|++--. ++++|.++||+|+.++-...+..- ..+++.+..+
T Consensus 4 ~GatG~vG~~--l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d 47 (183)
T PF13460_consen 4 FGATGFVGRA--LAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGD 47 (183)
T ss_dssp ETTTSHHHHH--HHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESC
T ss_pred ECCCChHHHH--HHHHHHHCCCEEEEEecCchhccc-ccccccceee
Confidence 4667777654 899999999999999976543222 5677777653
No 436
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=39.53 E-value=1.1e+02 Score=24.39 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCeEEEEecCc-----------cccccCCCCceEEEcCCCCCCCCCCCCCCHHHHHHHHHHhchHHHHH
Q 012645 24 LLQFAKRLASKRVKATLATTHY-----------TVKSIHATTVGVEPISDGFDEGGFKQAPSVKAYLESFKTVGSRTLAE 92 (459)
Q Consensus 24 ~~~la~~L~~~Gh~V~~~~~~~-----------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (459)
...+-+.|+++|+.+.++|... ....++..++.+...- ..... .+ -..+.+..
T Consensus 30 v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~-~K-------------P~~~~~~~ 93 (132)
T TIGR01662 30 VPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLY--ACPHC-RK-------------PKPGMFLE 93 (132)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEE--ECCCC-CC-------------CChHHHHH
Confidence 4567788899999999999976 1222333454432211 00000 01 01122333
Q ss_pred HHHHhh-cCCCCccEEEeCCCchhHHHHHHHcCCceEEEc
Q 012645 93 VILKYK-DSESPVNCIVYDSLLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 93 l~~~~~-~~~~~~Dlvi~D~~~~~~~~~a~~lgiP~v~~~ 131 (459)
+++.+. -. .-+++..+.....-..+|+..|+++|.+.
T Consensus 94 ~~~~~~~~~--~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 94 ALKRFNEID--PEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred HHHHcCCCC--hhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 344431 11 33567666533447888999999999864
No 437
>PRK05636 replicative DNA helicase; Provisional
Probab=39.49 E-value=81 Score=32.19 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKS 49 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~ 49 (459)
|++...|+.|-..=.+.+|...+ +.|..|.|++.+...+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSE 308 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHH
Confidence 67777789999999999998765 46889999988765433
No 438
>PRK06270 homoserine dehydrogenase; Provisional
Probab=39.40 E-value=2.1e+02 Score=27.49 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=37.2
Q ss_pred cHHHHhcccCccceec------cCc---hhhHHHhhhcCCeeec---cccccchhhHHHHHHHhhhceEEee
Q 012645 331 NQFEVLAHQAVGCFIT------HCG---WNSILEGLSLGVAVVA---VPQFSDQPTNAKFVEEVWEVGVRAK 390 (459)
Q Consensus 331 p~~~lL~~~~~~~~I~------HGG---~gs~~eal~~GvP~li---~P~~~DQ~~na~rv~~~~G~G~~~~ 390 (459)
...++|..+++..||- |+| ..-+.+||.+|+++|+ -|+...-..-....++. |+.....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 5567786666555665 553 5567899999999999 47643322333344556 6665544
No 439
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.30 E-value=46 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT 46 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 46 (459)
|++.+. +.|++- -.||.+|.+.||+|++.+....
T Consensus 2 ~~~~i~---GtGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 2 MIIAII---GTGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred cEEEEe---ccChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 455554 445444 4688999999999999977643
No 440
>PRK08589 short chain dehydrogenase; Validated
Probab=39.25 E-value=1.3e+02 Score=27.60 Aligned_cols=33 Identities=21% Similarity=0.073 Sum_probs=23.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.++ |.+- ..+|+.|.++|++|+++...
T Consensus 7 k~vlItGas-~gIG--~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGAS-TGIG--QASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECCC-chHH--HHHHHHHHHCCCEEEEEeCc
Confidence 566666543 3343 57899999999999988654
No 441
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.19 E-value=51 Score=29.85 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 1 MENQRERVHVLVLTYPAQ-GHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~-GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|+..++ -|+++++.++. +-+- .++|++|+++|++|++..-
T Consensus 1 ~~~~l~-~k~~lItGas~~~gIG--~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 1 MSGILS-GKKIVVMGVANKRSIA--WGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CccccC-CCEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEecC
Confidence 666543 35677776652 2333 6889999999999987753
No 442
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=38.85 E-value=43 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.5
Q ss_pred cCccceeccCchhhHHHhhhc----CCeeecccc
Q 012645 339 QAVGCFITHCGWNSILEGLSL----GVAVVAVPQ 368 (459)
Q Consensus 339 ~~~~~~I~HGG~gs~~eal~~----GvP~li~P~ 368 (459)
+++ +|+-||=||++.|+.. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999988664 688887753
No 443
>PRK08322 acetolactate synthase; Reviewed
Probab=38.66 E-value=66 Score=33.19 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.0
Q ss_pred cceeccCchh------hHHHhhhcCCeeeccc
Q 012645 342 GCFITHCGWN------SILEGLSLGVAVVAVP 367 (459)
Q Consensus 342 ~~~I~HGG~g------s~~eal~~GvP~li~P 367 (459)
.++++|.|-| .+.+|...++|+|++.
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3388887655 7889999999999985
No 444
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=38.50 E-value=59 Score=20.62 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 012645 398 TGEELNKCVNEVMDGERSQKIKRNVSKW 425 (459)
Q Consensus 398 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l 425 (459)
++++|.+||..+.++. -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5789999999999772 1666666554
No 445
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=38.42 E-value=2.4e+02 Score=23.70 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=60.4
Q ss_pred EEcCCCccCHHHHH-HHHHHHHhCCCeEEEEecCccccccCC-CCceEEEcCCC--------CCCCCCCCCCCHHHHHHH
Q 012645 12 VLTYPAQGHINPLL-QFAKRLASKRVKATLATTHYTVKSIHA-TTVGVEPISDG--------FDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 12 ~~~~~~~GH~~p~~-~la~~L~~~Gh~V~~~~~~~~~~~~~~-~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 81 (459)
.+.+...+.+..++ .+|..|+++|++|.=++.......-.. .......++.+ +..+.....-+....
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~L--- 79 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGAL--- 79 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHH---
Confidence 34455567777754 679999999999987776543222211 34455555422 111111111111111
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCch---------hHHHHHHHcCCceEEEccch
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT---------WALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~---------~~~~~a~~lgiP~v~~~~~~ 134 (459)
......++..+++ ++|++|.+-|.- .....|-..|||+++..+..
T Consensus 80 --a~A~~~l~~al~~------~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 80 --AEASAALRRALAE------GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred --HHHHHHHHHHHhc------CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 1111233333333 799999987641 12334557799999987654
No 446
>PRK13768 GTPase; Provisional
Probab=38.41 E-value=1.5e+02 Score=26.99 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=30.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
.+++...++-|-..=...++..|+++|++|.++..+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4566666788988889999999999999999987654
No 447
>PRK12828 short chain dehydrogenase; Provisional
Probab=38.41 E-value=63 Score=28.58 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.+.++.++ ++++ |+.|.+- ..+++.|.++|++|++++..
T Consensus 1 ~~~~~~~k~-vlIt-Gatg~iG--~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 1 MEHSLQGKV-VAIT-GGFGGLG--RATAAWLAARGARVALIGRG 40 (239)
T ss_pred CCCCCCCCE-EEEE-CCCCcHh--HHHHHHHHHCCCeEEEEeCC
Confidence 444334344 4444 4446665 56789999999998888753
No 448
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=38.39 E-value=1.8e+02 Score=27.16 Aligned_cols=108 Identities=18% Similarity=0.106 Sum_probs=58.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccC-ccceec---
Q 012645 271 VIYVSFGSMADIAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQA-VGCFIT--- 346 (459)
Q Consensus 271 ~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~-~~~~I~--- 346 (459)
+.+|+.|.|.. ..-+-.+.|++.|..+-++=-. ..+=+|-..+++.+. .+.+||
T Consensus 195 ~tiiA~G~mv~----~al~AA~~L~~~GIsa~Vi~m~------------------tIKPiD~~~i~~~A~~t~~IvT~Ee 252 (312)
T COG3958 195 LTIIATGVMVA----EALEAAEILKKEGISAAVINMF------------------TIKPIDEQAILKAARETGRIVTAEE 252 (312)
T ss_pred eEEEecCcchH----HHHHHHHHHHhcCCCEEEEecC------------------ccCCCCHHHHHHHHhhcCcEEEEec
Confidence 88899999862 2233455566666554332110 111123333333221 122443
Q ss_pred ---cCchhh-HHHhhhcCCe--eeccccccchhhHHHHHHHhhhceEEeeecCCCcccHHHHHHHHHHHh
Q 012645 347 ---HCGWNS-ILEGLSLGVA--VVAVPQFSDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNKCVNEVM 410 (459)
Q Consensus 347 ---HGG~gs-~~eal~~GvP--~li~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 410 (459)
+||.|| ++|.|.---| +..+... |++.-+.+..++ ++.. .++++.|.+.+.+++
T Consensus 253 Hsi~GGlGsaVAEvlse~~p~~~~riGvp-~~fg~sg~~~~L------l~~y---gl~~~~I~~~v~~~~ 312 (312)
T COG3958 253 HSIIGGLGSAVAEVLSENGPTPMRRIGVP-DTFGRSGKADEL------LDYY---GLDPESIAARVLELL 312 (312)
T ss_pred ceeecchhHHHHHHHHhcCCcceEEecCC-chhccccchHHH------HHHh---CCCHHHHHHHHHhhC
Confidence 799986 4566654444 4333322 777766666665 5555 788888888877653
No 449
>PRK08862 short chain dehydrogenase; Provisional
Probab=38.37 E-value=1.5e+02 Score=26.41 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=22.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|.++++.++. .+ =.++|++|+++|++|.++..
T Consensus 6 k~~lVtGas~-GI--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 6 SIILITSAGS-VL--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred eEEEEECCcc-HH--HHHHHHHHHHCCCEEEEEcC
Confidence 5666665554 33 34689999999999988754
No 450
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=38.30 E-value=50 Score=32.36 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 6 ERVHVLVLTY--PAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 6 ~~~kil~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
++|+|+.++. |+-|-..-.+.||..|+++|++|.++=.+.
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4567766654 799999999999999999999999885543
No 451
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=38.30 E-value=43 Score=33.19 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|+.|||.|+-.|-.| ..+|..|+++||+|+.+-.
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 344889888666555 4789999999999998864
No 452
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=38.11 E-value=47 Score=27.80 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
.+..||+++..|.-| ...++.|.+.||+|++++++
T Consensus 11 l~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 455788888877554 67899999999999999644
No 453
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=38.09 E-value=48 Score=26.70 Aligned_cols=53 Identities=6% Similarity=-0.035 Sum_probs=41.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc----ccccCCCCceEEEcC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT----VKSIHATTVGVEPIS 61 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~----~~~~~~~g~~~~~~~ 61 (459)
+|++.+.++.+|-.----++..|...|++|+.++.... .+.+.+.+.+++-+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 58899999999999999999999999999999876543 333334566666653
No 454
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=38.05 E-value=3.7e+02 Score=27.30 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=34.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSI 50 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~ 50 (459)
-+++...++.|--.=.+.++.+.+++|..|.+++.+...+.+
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i 306 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQL 306 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHH
Confidence 366667789999999999999999999999999987655443
No 455
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=38.04 E-value=77 Score=27.22 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHhhcCCCCccEEEeCC--CchhHHHHHHHcCCceEEEc
Q 012645 92 EVILKYKDSESPVNCIVYDS--LLTWALDVARQFGIYGAAMM 131 (459)
Q Consensus 92 ~l~~~~~~~~~~~Dlvi~D~--~~~~~~~~a~~lgiP~v~~~ 131 (459)
.+.+.+... ++|.|++=. -...|..+|.++|+|+|.+-
T Consensus 44 ~~~~~~~~~--~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDD--GIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhccc--CCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 444444433 799998433 22558999999999999974
No 456
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=37.97 E-value=70 Score=27.77 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccCchhhHHHhhhcCCee
Q 012645 284 ANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHCGWNSILEGLSLGVAV 363 (459)
Q Consensus 284 ~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 363 (459)
.++-..+.+.+...+.++|+..+.. ..+...|.++.++++. ==||++ .=.++|..+..+|+.+|+..
T Consensus 65 ~~~d~~l~~~l~~~~~dlvvLAGyM-rIL~~~fl~~~~grIl----------NIHPSL--LP~f~G~h~~~~A~~aG~k~ 131 (200)
T COG0299 65 EAFDRALVEALDEYGPDLVVLAGYM-RILGPEFLSRFEGRIL----------NIHPSL--LPAFPGLHAHEQALEAGVKV 131 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcchH-HHcCHHHHHHhhcceE----------ecCccc--ccCCCCchHHHHHHHcCCCc
Confidence 3455557777777777777665544 3444555544444222 125888 88899999999999999998
Q ss_pred eccc
Q 012645 364 VAVP 367 (459)
Q Consensus 364 li~P 367 (459)
-.+-
T Consensus 132 sG~T 135 (200)
T COG0299 132 SGCT 135 (200)
T ss_pred cCcE
Confidence 5554
No 457
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=37.94 E-value=1.5e+02 Score=28.42 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=32.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTV 47 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~ 47 (459)
.+|...++-|-..=.-.|+..|. ++|+.|.++..+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 35666678898888889999997 699999999999877
No 458
>PLN02285 methionyl-tRNA formyltransferase
Probab=37.86 E-value=1.4e+02 Score=28.56 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHh--CCCeEEEEecCc
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLAS--KRVKATLATTHY 45 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~--~Gh~V~~~~~~~ 45 (459)
++|||+|+..+.+|.. -+-.|.++..+ .+|+|..+.+..
T Consensus 5 ~~~kI~f~Gt~~fa~~-~L~~L~~~~~~~~~~~~iv~Vvt~~ 45 (334)
T PLN02285 5 RKKRLVFLGTPEVAAT-VLDALLDASQAPDSAFEVAAVVTQP 45 (334)
T ss_pred CccEEEEEECCHHHHH-HHHHHHhhhhccCCCCeEEEEEeCC
Confidence 6799999976655421 12223332221 368888876653
No 459
>PRK06128 oxidoreductase; Provisional
Probab=37.77 E-value=1.5e+02 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=22.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
|.++++.+ .|-+- ..+|+.|.++|++|++...
T Consensus 56 k~vlITGa-s~gIG--~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 56 RKALITGA-DSGIG--RATAIAFAREGADIALNYL 87 (300)
T ss_pred CEEEEecC-CCcHH--HHHHHHHHHcCCEEEEEeC
Confidence 56666654 33343 4789999999999987653
No 460
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=37.75 E-value=2e+02 Score=28.39 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT 46 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 46 (459)
|||+++..|..+| .|++++++.|+.++++..+.+
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCC
Confidence 7899998887754 678888888887777766543
No 461
>PRK05748 replicative DNA helicase; Provisional
Probab=37.75 E-value=1.8e+02 Score=29.18 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=33.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLA-SKRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~ 49 (459)
=+++...|+.|-..=.+.+|...+ ++|+.|.|++.+...+.
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~ 246 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAES 246 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHH
Confidence 367777899999999999998876 46999999998765543
No 462
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=37.65 E-value=65 Score=25.70 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=28.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
++++..|..++-.-+..+++.|+++|+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35666777778888999999999999999988443
No 463
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.62 E-value=54 Score=25.76 Aligned_cols=34 Identities=18% Similarity=-0.099 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
++..+.++..|-....-++..|.++|++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 6778889999999999999999999999998854
No 464
>PRK12829 short chain dehydrogenase; Provisional
Probab=37.48 E-value=57 Score=29.53 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
++.+++++. |+.|.+. ..+++.|.++||+|+.+.-.
T Consensus 9 ~~~~~vlIt--Ga~g~iG--~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVT--GGASGIG--RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred cCCCEEEEe--CCCCcHH--HHHHHHHHHCCCEEEEEeCC
Confidence 455555554 3346664 56799999999998877753
No 465
>PRK13236 nitrogenase reductase; Reviewed
Probab=37.46 E-value=65 Score=30.21 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=31.8
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 7 RVHVLVLTY-PAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 7 ~~kil~~~~-~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
.||++-+.. |+-|-..-.+.||.+|+++|++|.++=.+
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 577766643 79999999999999999999999999544
No 466
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.95 E-value=1.9e+02 Score=24.39 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=62.1
Q ss_pred cHHHHh-cccCccceeccCc---hhhHHHhhhcCCeeeccccc--cchhhHHHHHHHhhhceEEeeecCCCcccHHHHHH
Q 012645 331 NQFEVL-AHQAVGCFITHCG---WNSILEGLSLGVAVVAVPQF--SDQPTNAKFVEEVWEVGVRAKKNRAGIVTGEELNK 404 (459)
Q Consensus 331 p~~~lL-~~~~~~~~I~HGG---~gs~~eal~~GvP~li~P~~--~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~ 404 (459)
.|..|+ +||++++-+---| ..|+.|--.+|.=.+. |.- .=+-.|++..++- |.=-.+--+ ..+.+.|.+
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~rF-gfPfI~aVk---g~~k~~Il~ 138 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYVERF-GFPFIIAVK---GNTKDTILA 138 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHhc-CCceEEeec---CCCHHHHHH
Confidence 344433 4777743332222 2466666666655421 111 1255799999999 988777766 788999999
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHHH
Q 012645 405 CVNEVMDGERSQKIKRNVSKWREFAK 430 (459)
Q Consensus 405 ~i~~ll~~~~~~~~~~~a~~l~~~~~ 430 (459)
+..+=|.|.+.+++++.+.++.+...
T Consensus 139 a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 139 AFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99888888766778888877766543
No 467
>PRK06114 short chain dehydrogenase; Provisional
Probab=36.85 E-value=1.7e+02 Score=26.32 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=24.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|+++++.++.| ==..+|+.|.++|++|.+....
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCC
Confidence 57777765554 2356788999999999987653
No 468
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.83 E-value=1.9e+02 Score=25.91 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=23.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.++ |.+-. .+|+.|.++|++|.+++..
T Consensus 7 k~~lItGas-~giG~--~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 7 KVAIITGAS-SGIGR--AAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CEEEEeCCC-ChHHH--HHHHHHHHCCCEEEEEeCC
Confidence 566666443 44543 4788999999999888653
No 469
>PRK09165 replicative DNA helicase; Provisional
Probab=36.63 E-value=1.9e+02 Score=29.58 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=32.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEecCcccccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASK---------------RVKATLATTHYTVKSI 50 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~---------------Gh~V~~~~~~~~~~~~ 50 (459)
+++..-|+.|-..=.+.+|...+.+ |..|.|++.+...+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 6777778999999999988888643 7889999988665443
No 470
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=36.49 E-value=1.4e+02 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred CCccEEE-eCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 102 SPVNCIV-YDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 102 ~~~Dlvi-~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
..||+|| .|+.. ..|..=|.++|||.|.+.-+.
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 4789986 56543 446777889999999987544
No 471
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=36.40 E-value=1.6e+02 Score=29.14 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEE
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASK-RVKATLA 41 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~ 41 (459)
||||++..|+..| +|+++|++. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 7999999997777 499999885 5444444
No 472
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=36.32 E-value=68 Score=29.12 Aligned_cols=104 Identities=11% Similarity=0.032 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCeEEEEecCccccccCC-C---CceEEEcCCC-CCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhh
Q 012645 24 LLQFAKRLASKRVKATLATTHYTVKSIHA-T---TVGVEPISDG-FDEGGFKQAPSVKAYLESFKTVGSRTLAEVILKYK 98 (459)
Q Consensus 24 ~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-~---g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (459)
+-++++.+.+.|-+|.+.+.......+.. . .+-+..+|.. ....+.+..-.....+..-..+..+.-..+++++
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~- 195 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQY- 195 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHh-
Confidence 34566667667766766666666555444 2 3444445411 0000000000011111111123345556788887
Q ss_pred cCCCCccEEEeCCCc-----hhHHHHHHHcCCceEEEcc
Q 012645 99 DSESPVNCIVYDSLL-----TWALDVARQFGIYGAAMMT 132 (459)
Q Consensus 99 ~~~~~~Dlvi~D~~~-----~~~~~~a~~lgiP~v~~~~ 132 (459)
+.|+||+=..- ..=..+|+++|||+|.+.-
T Consensus 196 ----~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~R 230 (257)
T COG2099 196 ----RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIER 230 (257)
T ss_pred ----CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEec
Confidence 88999975432 2235789999999999853
No 473
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.28 E-value=98 Score=23.36 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 6 ERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 6 ~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
++.||+++|..+.+--.=.-.+-+.+.++|.++.+-..
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45789999987666333233444555557776654433
No 474
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=36.20 E-value=77 Score=26.62 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=26.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 012645 271 VIYVSFGSMADIAANQVDEIARGLKASEKPFLWVV 305 (459)
Q Consensus 271 ~V~vs~Gs~~~~~~~~~~~i~~a~~~~~~~~v~~~ 305 (459)
.+|+++||-.......++..+.++.+.+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999887777778888888887664334433
No 475
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=36.08 E-value=87 Score=24.63 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
||++..-|+.|-..-...+|+.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888765
No 476
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=36.02 E-value=78 Score=25.73 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=31.2
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 11 LVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 11 l~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
+++..|+.--+.|..-++...++.|++|+++.+--..
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL 43 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGL 43 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHH
Confidence 5566689999999999999999999999998874333
No 477
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=35.95 E-value=2e+02 Score=25.39 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=21.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
.++++. +.|.+- ..+++.|.++|++|++++..
T Consensus 7 ~vlItG-~sg~iG--~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 7 VALVTG-ASRGIG--RAIAERLAAQGANVVINYAS 38 (248)
T ss_pred EEEEEC-CCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 444443 445443 56788999999999777653
No 478
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=35.93 E-value=58 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLA 41 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~ 41 (459)
++.++|++..+|..| ..+|+.|.+.||+|++.
T Consensus 26 l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 26 LEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 566889998887655 46899999999999954
No 479
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.86 E-value=71 Score=31.35 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=40.8
Q ss_pred EEEEEeCCccc--CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCchhhhhhcCCCceEEeeecHHHHhcccCccceeccC
Q 012645 271 VIYVSFGSMAD--IAANQVDEIARGLKASEKPFLWVVKENENKLPVEFVNSVGETGLVVRWCNQFEVLAHQAVGCFITHC 348 (459)
Q Consensus 271 ~V~vs~Gs~~~--~~~~~~~~i~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~v~~~~p~~~lL~~~~~~~~I~HG 348 (459)
.-|-+.|+... ....+-.+|+.-|+..+.+.++.+++ |- ..|.+
T Consensus 307 ~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtst-------------------------------Cg---tCtrc 352 (431)
T TIGR01917 307 YFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTST-------------------------------UG---TCTRC 352 (431)
T ss_pred eeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCC-------------------------------CC---cchhH
Confidence 45555555443 22344555777777777776665532 22 46788
Q ss_pred chhhHHHhhhcCCeeecccc
Q 012645 349 GWNSILEGLSLGVAVVAVPQ 368 (459)
Q Consensus 349 G~gs~~eal~~GvP~li~P~ 368 (459)
|.-.+-|-=.+|+|.|.+-.
T Consensus 353 ga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 353 GATMVKEIERAGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHcCCCEEEEee
Confidence 88888888889999987753
No 480
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=35.85 E-value=21 Score=30.00 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc--ccccCCCCceEEEcC
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT--VKSIHATTVGVEPIS 61 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~--~~~~~~~g~~~~~~~ 61 (459)
..+|.++-+|++||. -|.-|++.|++|++...+.. .+.+++.|++..++.
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 468999999999986 47789999999999887654 344555787766654
No 481
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=35.83 E-value=72 Score=31.33 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=19.8
Q ss_pred eeccCchhhHHHhhhcCCeeecccc
Q 012645 344 FITHCGWNSILEGLSLGVAVVAVPQ 368 (459)
Q Consensus 344 ~I~HGG~gs~~eal~~GvP~li~P~ 368 (459)
..|.+|.-.+-|-=.+|+|.+.+-.
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEee
Confidence 4678888888888889999987653
No 482
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=35.76 E-value=45 Score=29.86 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=27.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT 46 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 46 (459)
|+++++..|-.| ..+|+.|.+.||+|+.+-....
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCHH
Confidence 678888877666 5799999999999998876543
No 483
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=35.76 E-value=92 Score=26.56 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=46.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcc---c---cccCC-CCceEEEcCCCCCCCCCCCCCCHHHHHHH
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYT---V---KSIHA-TTVGVEPISDGFDEGGFKQAPSVKAYLES 81 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~---~---~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (459)
.|.+++..+.|-....+.+|-+-+-+|.+|.++=.-.. . ..++. +++++.....++... ...... +
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~----~~~~~~--~- 77 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWR----MNEEEE--D- 77 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT--------GGGHHH--H-
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCccccc----CCCcHH--H-
Confidence 47888888888888777666666667778887744221 0 11122 457777776443321 111111 1
Q ss_pred HHHhchHHHHHHHHHhhcCCCCccEEEeCCCch
Q 012645 82 FKTVGSRTLAEVILKYKDSESPVNCIVYDSLLT 114 (459)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~Dlvi~D~~~~ 114 (459)
....+..+....+.+.. ..+|+||.|....
T Consensus 78 -~~~~~~~~~~a~~~i~~--~~~dlvILDEi~~ 107 (172)
T PF02572_consen 78 -RAAAREGLEEAKEAISS--GEYDLVILDEINY 107 (172)
T ss_dssp -HHHHHHHHHHHHHHTT---TT-SEEEEETHHH
T ss_pred -HHHHHHHHHHHHHHHhC--CCCCEEEEcchHH
Confidence 33334455555555533 3899999997654
No 484
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=35.70 E-value=43 Score=33.63 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCcccc
Q 012645 10 VLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVK 48 (459)
Q Consensus 10 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 48 (459)
+++..-|+.|-..=++.++..+.++|+.|.|++.+...+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~ 135 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ 135 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH
Confidence 455666799999999999999999999999999875443
No 485
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=35.64 E-value=80 Score=32.95 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.1
Q ss_pred cceeccCchh------hHHHhhhcCCeeeccc
Q 012645 342 GCFITHCGWN------SILEGLSLGVAVVAVP 367 (459)
Q Consensus 342 ~~~I~HGG~g------s~~eal~~GvP~li~P 367 (459)
.++++|.|-| .+.+|.+.++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3488887654 7889999999999984
No 486
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=35.62 E-value=1.6e+02 Score=26.19 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEec
Q 012645 8 VHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATT 43 (459)
Q Consensus 8 ~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 43 (459)
||.++++.++ |-+- ..+|+.|.++|++|.+...
T Consensus 2 ~k~ilItGas-~giG--~~la~~l~~~g~~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGAS-RGIG--RATAVLAAARGWSVGINYA 34 (248)
T ss_pred CcEEEEeCCC-CcHH--HHHHHHHHHCCCEEEEEeC
Confidence 3455565443 4444 4588999999999977643
No 487
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=35.60 E-value=54 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+|||.++-.|++| .+||+.|++.||+|++-+..
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 3789999999999 57999999999999999875
No 488
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=35.51 E-value=1.4e+02 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCccEEE-eCCCc-hhHHHHHHHcCCceEEEccch
Q 012645 102 SPVNCIV-YDSLL-TWALDVARQFGIYGAAMMTNS 134 (459)
Q Consensus 102 ~~~Dlvi-~D~~~-~~~~~~a~~lgiP~v~~~~~~ 134 (459)
..||+|| .|+.. ..+..=|.++|||+|.+.-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 3789986 56544 346777889999999987543
No 489
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=35.41 E-value=1.6e+02 Score=26.18 Aligned_cols=33 Identities=18% Similarity=0.007 Sum_probs=23.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
|.++++.++ |.+ =..+|+.|.++||+|+.+...
T Consensus 6 k~vlItGas-~gI--G~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 6 KVALVTGAN-TGL--GQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CEEEEECCC-chH--HHHHHHHHHHCCCEEEEEcCc
Confidence 455666543 334 357899999999999888753
No 490
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=35.39 E-value=33 Score=29.40 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccccC
Q 012645 7 RVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKSIH 51 (459)
Q Consensus 7 ~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~ 51 (459)
+..++|+..++.|-..=..++|+++.++|+.|.|+..+...+.++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457888888899998889999999999999999999887766554
No 491
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=35.17 E-value=2.5e+02 Score=26.33 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=31.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
.|.++..++.|-..=+..++..|.++|+.|.++..+...
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 445555579999999999999999999999998876433
No 492
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=35.13 E-value=1.3e+02 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCc
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
..+|||-|+..|=-| ..||++|.++||+|.-+....
T Consensus 8 ~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 8 AARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ----EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCH
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 467999999888666 368999999999998776543
No 493
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=35.07 E-value=99 Score=30.17 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=45.8
Q ss_pred ccceeccCchhhHHHhhhcC-----------------CeeeccccccchhhHHHHHHHhhhceEEeeec-CCCcccHHHH
Q 012645 341 VGCFITHCGWNSILEGLSLG-----------------VAVVAVPQFSDQPTNAKFVEEVWEVGVRAKKN-RAGIVTGEEL 402 (459)
Q Consensus 341 ~~~~I~HGG~gs~~eal~~G-----------------vP~li~P~~~DQ~~na~rv~~~~G~G~~~~~~-~~~~~~~~~l 402 (459)
..+++|.||..+...|+.+. .|.+.++-.. ++-+..-+.-+ |+|...-.- .++.++.+.|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~l-Glg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARIL-GLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHT-TSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhccee-eeEEEEecCCcchhhhHHHh
Confidence 56799999999888776433 4666665444 55565555566 999544432 2356888889
Q ss_pred HHHHHHHhcC
Q 012645 403 NKCVNEVMDG 412 (459)
Q Consensus 403 ~~~i~~ll~~ 412 (459)
.++|.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 8888877654
No 494
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.96 E-value=69 Score=33.32 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=21.3
Q ss_pred cceeccCchh------hHHHhhhcCCeeeccc
Q 012645 342 GCFITHCGWN------SILEGLSLGVAVVAVP 367 (459)
Q Consensus 342 ~~~I~HGG~g------s~~eal~~GvP~li~P 367 (459)
.++++|.|-| .+.+|...++|+|++-
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3388888776 5789999999999984
No 495
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=34.96 E-value=1e+02 Score=27.38 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=30.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTVKS 49 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 49 (459)
-+++...++.|-..=.+.++...+++|+.|.|++.+...+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~ 58 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREER 58 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHH
Confidence 34555557888877778887777778999999999765544
No 496
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=34.89 E-value=69 Score=28.95 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecC
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTH 44 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 44 (459)
+..++||++.-.-.==..-+-.....|.++||+|++++-.
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 5567887776544434444556666778999999999754
No 497
>PRK05541 adenylylsulfate kinase; Provisional
Probab=34.76 E-value=2.8e+02 Score=23.33 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=35.0
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 1 MENQRERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 1 m~~~~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
|++..+++-|+|...++.|-..-.-.|++.|...|..+.++......
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 55544556677777789999888889999998888888777554443
No 498
>PLN02778 3,5-epimerase/4-reductase
Probab=34.76 E-value=78 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE
Q 012645 5 RERVHVLVLTYPAQGHINPLLQFAKRLASKRVKATL 40 (459)
Q Consensus 5 ~~~~kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~ 40 (459)
..+||||+. |+.|.+-. .|++.|.++||+|++
T Consensus 7 ~~~~kiLVt--G~tGfiG~--~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 7 SATLKFLIY--GKTGWIGG--LLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCeEEEE--CCCCHHHH--HHHHHHHhCCCEEEE
Confidence 456887765 55566654 467889999999975
No 499
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.57 E-value=2.4e+02 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=32.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEecCccc
Q 012645 9 HVLVLTYPAQGHINPLLQFAKRLASKRVKATLATTHYTV 47 (459)
Q Consensus 9 kil~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 47 (459)
.|+|+..++-|-..=+..||..|+.+|++|.++..+.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 456666669999999999999999999999999887654
No 500
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=34.51 E-value=34 Score=31.10 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCc
Q 012645 22 NPLLQFAKRLASKRVKATLATTHY 45 (459)
Q Consensus 22 ~p~~~la~~L~~~Gh~V~~~~~~~ 45 (459)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 345678999999999999999874
Done!