Query 012646
Match_columns 459
No_of_seqs 488 out of 1290
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 13:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.8E-46 6.2E-51 361.4 35.8 402 26-440 51-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.9E-38 1.7E-42 299.3 19.9 373 15-420 48-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.2E-35 7.6E-40 279.8 28.8 355 13-419 44-431 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 8.3E-33 2.8E-37 266.0 25.7 392 22-424 46-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.6E-34 5.5E-39 268.0 10.7 349 7-408 13-364 (375)
6 2xut_A Proton/peptide symporte 100.0 1.6E-28 5.4E-33 238.1 22.9 152 17-170 35-197 (524)
7 2cfq_A Lactose permease; trans 100.0 6.5E-30 2.2E-34 240.0 7.4 365 15-424 28-404 (417)
8 3o7q_A L-fucose-proton symport 99.5 2.9E-13 9.9E-18 127.7 13.2 152 235-397 29-181 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.5 1.4E-13 4.6E-18 130.5 9.7 180 234-424 30-211 (451)
10 2gfp_A EMRD, multidrug resista 99.4 1.6E-12 5.4E-17 119.9 13.2 169 242-424 10-179 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.4 1.2E-12 4E-17 125.5 10.8 164 241-418 22-194 (491)
12 2xut_A Proton/peptide symporte 99.4 5.8E-12 2E-16 121.7 14.7 161 247-420 27-198 (524)
13 2cfq_A Lactose permease; trans 99.3 1.2E-12 4.2E-17 122.4 7.6 146 28-175 257-404 (417)
14 4gc0_A D-xylose-proton symport 99.1 4.8E-10 1.6E-14 107.3 13.4 152 24-175 306-467 (491)
15 2g9p_A Antimicrobial peptide l 63.7 2.5 8.6E-05 19.6 0.8 14 49-62 2-15 (26)
16 4dve_A Biotin transporter BIOY 26.1 1.7E+02 0.0057 23.3 6.2 25 36-60 99-123 (198)
17 3arc_T Photosystem II reaction 23.6 88 0.003 16.2 2.7 9 168-176 20-28 (32)
18 3d9s_A Aquaporin-5, AQP-5; aqu 22.0 1.3E+02 0.0044 25.2 5.1 11 410-420 215-225 (266)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.8e-46 Score=361.38 Aligned_cols=402 Identities=26% Similarity=0.464 Sum_probs=320.9
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHH------------------HHhhHHHHH
Q 012646 26 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNA------------------AAANLAMLL 87 (459)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~ 87 (459)
+.+..+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++ +++|++.++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 44567789999999999999999999999999999999999999999999998 478999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcccc------ccchhHHHHHhhHHHH
Q 012646 88 TGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKL------ETWGWRLSLGLAAAPA 161 (459)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~------~~~gwr~~f~~~~~~~ 161 (459)
++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++...... ...+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998885433221 2357999999999999
Q ss_pred HHHHHhhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHH
Q 012646 162 LMMTVGGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPM 241 (459)
Q Consensus 162 ~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (459)
++..+..+++||||+|+..+++.+++++.+++.+..+..+++..+.++..+.+++.. .... ....++.........
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHH
Confidence 988888899999999999999999999998887765544443333332222222111 1111 122334555566666
Q ss_pred hhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhh
Q 012646 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
+.+..+.....+|.+.+.+..+.+...........++..+++.++++++.||+|||+.+..+.....++.+.+.....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-- 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-- 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh--
Confidence 777778888889999998888888778788888889999999999999999999999999888888887776655432
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF---- 397 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---- 397 (459)
.....+..+....++..+++.++.++.+.+.+|++|++.|+++.|+.+..+++++.+++.+++.+.+..
T Consensus 365 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~ 437 (491)
T 4gc0_A 365 -------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA 437 (491)
T ss_dssp -------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred -------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112234455555666667777788888899999999999999999999999999999999888765432
Q ss_pred --h-hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHhcccc
Q 012646 398 --K-FGIFLFFAGWVTIMTIFVYFFLPETKGVPIEEMILLWRKHWF 440 (459)
Q Consensus 398 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (459)
+ ...++++++++.+..++.++++||||+|++||+++..+++.+
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 1 234566677777777888899999999999999887765543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.9e-38 Score=299.27 Aligned_cols=373 Identities=13% Similarity=0.078 Sum_probs=273.1
Q ss_pred hhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHH----HhhHHHHHHHH
Q 012646 15 KKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAA----AANLAMLLTGR 90 (459)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r 90 (459)
....+...+++ .+..+.|++.+.+.++..++++++|+++||+|||++++.+.++.+++.+++++ +++++.++++|
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34445566778 99999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch-hHHHHHhhHHHHHHHHHh-h
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG-WRLSLGLAAAPALMMTVG-G 168 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g-wr~~f~~~~~~~~~~~~~-~ 168 (459)
+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.++ ....+..| ||+.|++.++++++..++ .
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~g~w~~~f~~~~~~~~~~~~~~~ 204 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF--LLGMAWFNDWHAALYMPAFCAILVALFAF 204 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH--HHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999994 44345567 999999999888776554 4
Q ss_pred hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcc--hHHHhccCchhHHHHHHHHHHhhhhc
Q 012646 169 ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHP--FRNILERRNRPQLVMAIFMPMFQILT 246 (459)
Q Consensus 169 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (459)
+++||+|++...+++.+.. ++ ..+ +.++ .++++....+ .++.+++ +.++...+..+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~----------~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 266 (451)
T 1pw4_A 205 AMMRDTPQSCGLPPIEEYK----------ND-YPD--DYNE-KAEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYL 266 (451)
T ss_dssp HHCCCSSTTTCCCSCTTTC----------CC-----------------CCTHHHHHHTSSC----HHHHHHHHHHHHHHH
T ss_pred hhccCCHhhcCCCChhhhc----------cc-ccc--cchh-hhhcccccccchHHHHHcC----HHHHHHHHHHHHHHH
Confidence 6688887543221111100 00 000 0000 0000101111 1222322 233444444444555
Q ss_pred chHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhc--CCchhhhhhhHHHH-HHHHHHHHHHhhhc
Q 012646 247 GINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKL--GRRALLISGGIQMI-TCQVIVSIILGLKF 322 (459)
Q Consensus 247 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 322 (459)
.......+.|.++++ +|++..+.+.......++.+++.++.+++.||+ ++|+.+..+..+.. ++.+++...
T Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 341 (451)
T 1pw4_A 267 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----- 341 (451)
T ss_dssp HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----
Confidence 566777888888887 899999999999999999999999999999999 99888776655544 332222111
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHhhchhHH
Q 012646 323 GPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLF-FTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 401 (459)
...+.+.......+.+.+.+.. .+....+..|.+|++.|+++.|+.+....+ +..++|.+.|.+.++.++..
T Consensus 342 ------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 414 (451)
T 1pw4_A 342 ------PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 414 (451)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred ------cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 1112333334444444444333 333357788999999999999999999999 99999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 012646 402 FLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ 420 (459)
.+...+++.+++.++..+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.2e-35 Score=279.84 Aligned_cols=355 Identities=12% Similarity=0.102 Sum_probs=263.1
Q ss_pred hhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHH---HHHhhHHHHHHH
Q 012646 13 YLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALN---AAAANLAMLLTG 89 (459)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~ 89 (459)
......+...+++|+++.+.|++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++ +++++++.+++.
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 33344455678899999999999999999999999999999999999999999999999999999 888999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccch--------------------
Q 012646 90 RILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWG-------------------- 149 (459)
Q Consensus 90 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~g-------------------- 149 (459)
|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.++..... ...+
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL-SNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH-TSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccccCCcchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999533321 2222
Q ss_pred -----hHHHHHhhHHHHHHHHHhhhc--cCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchH
Q 012646 150 -----WRLSLGLAAAPALMMTVGGIL--LPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFR 222 (459)
Q Consensus 150 -----wr~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (459)
||+.|++.+++.++..+..++ .||+++...+++ ++++.+.+++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------------------~~~~~~~~~~ 252 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------------------------------KQGSFSASLS 252 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------------------------------STTSHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------------------------------cccchhhhHH
Confidence 999998877776666554433 466542100000 0011112344
Q ss_pred HHhccCchhHHHHHHHHHHhhhhcchHHHHHhHHHH-HHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhh
Q 012646 223 NILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL-FQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALL 300 (459)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 300 (459)
+.++++..+ ...+..+...........+.|.+ .++ +|++..+.+.......++.+++.++.+++.||++||+.+
T Consensus 253 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 253 RLARIRHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHTTCSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHhChHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 555544432 23333333444456667777877 777 599999999999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHH
Q 012646 301 ISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL 380 (459)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 380 (459)
..+..+..++.+++... ... .......+.+.+.+.. .+..+.+..|.+|++ ++.+.++.. .+.
T Consensus 329 ~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 391 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA-------------GGH-VGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTI 391 (438)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CHH-HHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHc-------------CCc-HHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHH
Confidence 88877776665544432 111 2233334444444433 345567777889866 888888877 677
Q ss_pred HHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhc
Q 012646 381 FFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFVYFF 419 (459)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 419 (459)
+++.++|.+.|.+.+..+ +...+.+.+++.+...+..+.
T Consensus 392 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 392 IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 666555555554444443333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=8.3e-33 Score=266.01 Aligned_cols=392 Identities=15% Similarity=0.110 Sum_probs=251.3
Q ss_pred CCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhh-cCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh
Q 012646 22 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 100 (459)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (459)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhhhcc-CCCh--
Q 012646 101 NQAVPLYLSEMAPTHL--RGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL-PETP-- 175 (459)
Q Consensus 101 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~es~-- 175 (459)
.+...++++|++|+++ |+.++++++.+.++|..++|.+ +....+..|||+.|++.++..++..+..++. |+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI--VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 7778888999999999999999 4555556789999999877776665544332 2111
Q ss_pred --hhHHhhCCHHHHHHHHHH----------------HhCCchhhHHHHHHHH---------HHHhhccCCcchHHHhccC
Q 012646 176 --NSLIERGKKVEGRRVLEK----------------IRGTKEVNAEYQDMVD---------ASELANSIKHPFRNILERR 228 (459)
Q Consensus 176 --~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 228 (459)
+...++.+.++.++..+. ..+..+.+........ .....++.+.+ ...+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 281 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLR 281 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HHHHHH
Confidence 011111122333332222 1111111111000000 00000000000 001111
Q ss_pred chhHHHHHHHHHHhhhhcchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhh-----h
Q 012646 229 NRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLI-----S 302 (459)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~ 302 (459)
... .....+........+.....+.+.+.++ .+.+..+.+.......+..+++..+.+++.||++||+... .
T Consensus 282 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 282 VVS--YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp CTT--HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 111 1111212222222333444555666655 6777667788888889999999999999999999987655 4
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHH
Q 012646 303 GGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFF 382 (459)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 382 (459)
+..+..++..++....... .. ....+.+.......+.+.+.+. ..+..+.++.|.+|++.|+++.|+.+....+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555544443322110 00 0112233344444444444443 34555788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhccCCCC
Q 012646 383 TFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETK 424 (459)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (459)
..+++.+.+.+.+......+...+.++.+..++.++..++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877654444555555555555555555544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-34 Score=268.03 Aligned_cols=349 Identities=14% Similarity=0.156 Sum_probs=258.5
Q ss_pred hhhhhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHH
Q 012646 7 KFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAML 86 (459)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l 86 (459)
.+....+.+.. +...+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+
T Consensus 13 ~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (375)
T 2gfp_A 13 QMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL 91 (375)
T ss_dssp HHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33333343433 44567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHH
Q 012646 87 LTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTV 166 (459)
Q Consensus 87 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~ 166 (459)
++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+ .....+..+||+.|++.++..++..+
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI--GGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 55555667999999999888877766
Q ss_pred -hhhccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhh
Q 012646 167 -GGILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQIL 245 (459)
Q Consensus 167 -~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (459)
..+++||++++.. ++++.+.++++.++++. .+...+..+...
T Consensus 170 ~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 212 (375)
T 2gfp_A 170 SMARWMPETRPVDA---------------------------------PRTRLLTSYKTLFGNSG----FNCYLLMLIGGL 212 (375)
T ss_dssp CCCCSSCCCSTTTC---------------------------------CCCCTTTCSTHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHCcccCCCCc---------------------------------ccccHHHHHHHHhcCcc----hHHHHHHHHHHH
Confidence 4455788763210 00112334445554443 222333333334
Q ss_pred cchHHHHHhHHHHHHh-cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHH-HHHHHHHHHHHHhhhcC
Q 012646 246 TGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQ-MITCQVIVSIILGLKFG 323 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 323 (459)
........+.|.+.++ +|.++.+.+.......++.+++.++.+++.||.+++ ...+... ...+...+.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---- 286 (375)
T 2gfp_A 213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---- 286 (375)
T ss_dssp HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----
Confidence 4455666677777665 888888999999999999999999999999998872 2222222 1222111111100
Q ss_pred CCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 012646 324 PNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGIFL 403 (459)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (459)
...+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+....+|..++|.+.+.+.+..++...+
T Consensus 287 -----~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 359 (375)
T 2gfp_A 287 -----GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL 359 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred -----ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 0112333344445555555543 4455677889998 89999999999999999999999999998877766655
Q ss_pred HHHHH
Q 012646 404 FFAGW 408 (459)
Q Consensus 404 ~~~~~ 408 (459)
...+.
T Consensus 360 ~~~~~ 364 (375)
T 2gfp_A 360 LMTLM 364 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.6e-28 Score=238.13 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=133.4
Q ss_pred cccccCCccc------CCchhhHHHHHHHHHHHHHHHHhHhhhhhhc-CcchhhhHHHHHHHHHHHHHHHHh-hHHHHHH
Q 012646 17 KHAHENNYCK------YDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAA-NLAMLLT 88 (459)
Q Consensus 17 ~~~~~~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~ 88 (459)
.+....+++| ++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3333445567 9999999999999999999999999999999 999999999999999999999999 9999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhccCccchhHHHHH---HHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHH
Q 012646 89 GRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMM---FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMT 165 (459)
Q Consensus 89 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~ 165 (459)
.|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+ .....+..|||+.|++.++..++..
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~g~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS--MPLLLKNFGAAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT--STHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876666 899999999999998 4444555789999999888877665
Q ss_pred Hhhhc
Q 012646 166 VGGIL 170 (459)
Q Consensus 166 ~~~~~ 170 (459)
+..++
T Consensus 193 ~~~~~ 197 (524)
T 2xut_A 193 VFFWL 197 (524)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 55443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=6.5e-30 Score=240.00 Aligned_cols=365 Identities=12% Similarity=0.045 Sum_probs=221.8
Q ss_pred hhcccccCCcccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHH---HHHHHhhH-HHHHHHH
Q 012646 15 KKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAA---LNAAAANL-AMLLTGR 90 (459)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~---~~~~~~~~-~~l~~~r 90 (459)
+..+...++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+++++.. ...+++.. ..+...+
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS 107 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445677899999999999999999999999999999999999999998887765322 22233322 1244566
Q ss_pred HHhhhhhhhhhhhhhhhhhhccCc--cchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh
Q 012646 91 ILLGVGIGFGNQAVPLYLSEMAPT--HLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG 168 (459)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~ 168 (459)
++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.++. ...+ .+||+.|++.++..++..+..
T Consensus 108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~--~l~~-~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG--IMFT-INNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH--HHHH-HCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH--HHHH-hchhHHHHHHHHHHHHHHHHH
Confidence 777776665555555555555543 35566677777777888888888843 3222 479999998877765555555
Q ss_pred hccCCChhhHHhhCCHHHHHHHHHHHhCCchhhHHHHHHHHHHHhhccCCcchHHHhccCchhHHHHHHHHHHhhhhcch
Q 012646 169 ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGI 248 (459)
Q Consensus 169 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (459)
++.+|+++. +.+.++. ++ .+.++....+.++.++++..+.. .+..+.....+
T Consensus 185 ~~~~~~~~~---~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 236 (417)
T 2cfq_A 185 FFAKTDAPS---SATVANA----------VG-----------ANHSAFSLKLALELFRQPKLWFL----SLYVIGVSCTY 236 (417)
T ss_dssp CSSCCCCSC---SSCSSSS----------SS-----------SCCCCCCHHHHHHHTTCHHHHHH----HHHHHHHHHHH
T ss_pred HHcCccccc---ccccccc----------cc-----------cccccccHHHHHHHhcCCchhhH----HHHHHHHHHHH
Confidence 554433311 0000000 00 00000000112334443332221 11112112222
Q ss_pred HHHHHhHHHHHHh-cCC---CCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhhcCC
Q 012646 249 NSILFYAPVLFQS-MGF---KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGP 324 (459)
Q Consensus 249 ~~~~~~~~~~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (459)
.....+.|.++.+ ++. +....+....+..++.+++.++.+++.||++||+.+..+..+..+..+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------- 309 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------- 309 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3333445656544 332 23345667777778888999999999999999998877666655543333211
Q ss_pred CccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 012646 325 NQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSIT-VAVNLFFTFVIAQIFLTLLCSFKFGIFL 403 (459)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (459)
.+.+..+....+......... +..+.+.+|.+|++.|+++.++. +....+|+.++|.+.|.+.++.++...+
T Consensus 310 ------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f 382 (417)
T 2cfq_A 310 ------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp ------CSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence 112222222222233322222 22356789999999999999994 8888999999999999999988876666
Q ss_pred HHHHHHHHHHHHH-HhccCCCC
Q 012646 404 FFAGWVTIMTIFV-YFFLPETK 424 (459)
Q Consensus 404 ~~~~~~~~~~~~~-~~~~~~~~ 424 (459)
.+.+++.+++.+. +...++++
T Consensus 383 ~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 383 LVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHhhhcCCC
Confidence 6555555555444 33444433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=2.9e-13 Score=127.71 Aligned_cols=152 Identities=11% Similarity=-0.023 Sum_probs=117.9
Q ss_pred HHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 012646 235 MAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIV 314 (459)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 314 (459)
....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33344444444445667777888888899999999999999999999999999999999999999999999888887776
Q ss_pred HHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012646 315 SIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLL 394 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 394 (459)
..... ..+.+..++..++.+.+.+.... ....+++|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 109 ~~~~~----------~~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 109 WPAAE----------IMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHH----------TTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred Hhccc----------cccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33210 12344455555556666554443 44688899999999999999999999999999999999988
Q ss_pred -hhc
Q 012646 395 -CSF 397 (459)
Q Consensus 395 -~~~ 397 (459)
+..
T Consensus 178 ~~~~ 181 (438)
T 3o7q_A 178 LSNV 181 (438)
T ss_dssp HTSS
T ss_pred hccc
Confidence 444
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=1.4e-13 Score=130.48 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=131.3
Q ss_pred HHHHHHHHhhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 012646 234 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 313 (459)
+....+..+.............|.+.+++ .+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34444444444444455666778887888 99999999999999999999999999999999999999998888888777
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 393 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 393 (459)
....... ..+.+..++...+.+.+.+... +...+++.|.+|+++|+++.++.+....+|..++|.+.+.+
T Consensus 109 ~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 109 MGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHhhhhc---------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7651100 0223344455555555555443 44467889999999999999999999999999999999998
Q ss_pred Hhhch-hHHHHHHHHHHH-HHHHHHHhccCCCC
Q 012646 394 LCSFK-FGIFLFFAGWVT-IMTIFVYFFLPETK 424 (459)
Q Consensus 394 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 424 (459)
.+..+ |...+.+.++.. +..++..+..||++
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 88777 765555544443 44445555666543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.41 E-value=1.6e-12 Score=119.94 Aligned_cols=169 Identities=13% Similarity=0.107 Sum_probs=127.4
Q ss_pred hhhhcchHHHHHhHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHhhh
Q 012646 242 FQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 321 (459)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (459)
+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 85 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----
Confidence 3333444556666777778899999999999999999999999999999999999999999888888887776654
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 012646 322 FGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKFGI 401 (459)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 401 (459)
++.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.++..
T Consensus 86 ---------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 155 (375)
T 2gfp_A 86 ---------SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA 155 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHH
Confidence 2233344444444444443 334446788899999999999999999999999999999999988878776
Q ss_pred HHHHHHHHHHHHHH-HHhccCCCC
Q 012646 402 FLFFAGWVTIMTIF-VYFFLPETK 424 (459)
Q Consensus 402 ~~~~~~~~~~~~~~-~~~~~~~~~ 424 (459)
.+...++..+...+ ..+..||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHCcccC
Confidence 66655555444444 444555543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.38 E-value=1.2e-12 Score=125.53 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=120.5
Q ss_pred HhhhhcchHHHHHhHHHHHH-h-----cCCCCchhHHHHHHHHHHHHHHhHHHHHHHhh-cCCchhhhhhhHHHHHHHHH
Q 012646 241 MFQILTGINSILFYAPVLFQ-S-----MGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMITCQVI 313 (459)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~ 313 (459)
.+.....+.....+.+.+++ . +|.+..+.++......++..++.++.|+++|| +|||+.+..+..+..++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 33333344445455555544 4 89999999999999999999999999999999 89999999988887777666
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccc--cchhhHHHHHHHHHHHHHHHHHHH
Q 012646 314 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLET--RSAGQSITVAVNLFFTFVIAQIFL 391 (459)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~ 391 (459)
.... ++.+...+...+.+.+.+... +...++++|.+|++. |+.+.++.+....+|..++|.+.+
T Consensus 102 ~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 102 LALP-------------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHSC-------------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-------------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 5432 223344444555555555433 444678899999988 777888899999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHh
Q 012646 392 TLLCSFKFGIFLFFAGWVTIMTIFVYF 418 (459)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (459)
.+.++.+|...+...++..+.+.+...
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999988887766666555555444443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.37 E-value=5.8e-12 Score=121.72 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=118.5
Q ss_pred chHHHHHhHHHHHH-hcC------CCCchhHHHHHHHHHHHHHHhHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHH
Q 012646 247 GINSILFYAPVLFQ-SMG------FKGDASLYSSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVSIIL 318 (459)
Q Consensus 247 ~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
.+.....+.+.+++ ++| ++..+.++......++..++.++.|+++||+ |||+.+..+..+..++.++....
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~- 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF- 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-
Confidence 34445555665554 588 9999999999999999999999999999999 99999988888777776665542
Q ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHhhcccccccceecccCCccccchhhHH---HHHHHHHHHHHHHHHHHHHHh
Q 012646 319 GLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSI---TVAVNLFFTFVIAQIFLTLLC 395 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~~~~ 395 (459)
..+.+..++...+.+.+.+.. .+...+++.|.+|++.|++..+. .+....+|..++|.+.+.+.+
T Consensus 106 -----------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 106 -----------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred -----------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112344444455555555533 34446788999999999876666 888899999999999999988
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhcc
Q 012646 396 SFKFGIFLFFAGWVTIMTIFVYFFL 420 (459)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
..++...+.+.+++.+...+.....
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887766666665555555544443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=1.2e-12 Score=122.38 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=120.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 012646 28 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLY 107 (459)
Q Consensus 28 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 107 (459)
+....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999999999999999999988888887777777788888888888888877777777889
Q ss_pred hhhccCccchhHHHHH-HHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHhh-hccCCCh
Q 012646 108 LSEMAPTHLRGGLNMM-FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGG-ILLPETP 175 (459)
Q Consensus 108 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~es~ 175 (459)
+.|.+|++.|+.+.+. ++....+|.+++|.+ .+...+..|++..|.+.++..++..+.. ...||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l--~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH--HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 477888999999998 4455556688999998888877776654 4466654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.12 E-value=4.8e-10 Score=107.29 Aligned_cols=152 Identities=15% Similarity=0.077 Sum_probs=106.8
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHhHhhhhhhcCcchhhhHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHhhhhhh
Q 012646 24 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAA-----NLAMLLTGRILLGVGIG 98 (459)
Q Consensus 24 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~ 98 (459)
+.+.+............+...++.++.+.+.||+|||+.++.+.....++.+..+... +...+...-+..+....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 3455666677777778888899999999999999999999999988888877665432 12222222222222222
Q ss_pred hhhhhhhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhhcc----ccccchhHHHHHhhHHHHHHHHHhh-hccCC
Q 012646 99 FGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ----KLETWGWRLSLGLAAAPALMMTVGG-ILLPE 173 (459)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e 173 (459)
...+....+.+|.+|.+.|++++++......+|..+++.+..... .....++.+.|++.++++++..+.. +++||
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 344667789999999999999999999988888888776521111 1122356667888888887776654 66899
Q ss_pred Ch
Q 012646 174 TP 175 (459)
Q Consensus 174 s~ 175 (459)
|.
T Consensus 466 Tk 467 (491)
T 4gc0_A 466 TK 467 (491)
T ss_dssp CT
T ss_pred CC
Confidence 86
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=63.72 E-value=2.5 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.2
Q ss_pred hHhhhhhhcCcchh
Q 012646 49 VASPVTRDYGRRAS 62 (459)
Q Consensus 49 ~~g~l~dr~Grk~~ 62 (459)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=26.08 E-value=1.7e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcCcc
Q 012646 36 TSSLYLAGLVASFVASPVTRDYGRR 60 (459)
Q Consensus 36 ~s~~~~~~~i~~~~~g~l~dr~Grk 60 (459)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456777888888899999987543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.57 E-value=88 Score=16.25 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=6.0
Q ss_pred hhccCCChh
Q 012646 168 GILLPETPN 176 (459)
Q Consensus 168 ~~~~~es~~ 176 (459)
..+++|+|+
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 355788884
No 18
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=22.01 E-value=1.3e+02 Score=25.25 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=4.7
Q ss_pred HHHHHHHHhcc
Q 012646 410 TIMTIFVYFFL 420 (459)
Q Consensus 410 ~~~~~~~~~~~ 420 (459)
.+++.+++.++
T Consensus 215 a~la~~~y~~l 225 (266)
T 3d9s_A 215 AVLAAILYFYL 225 (266)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444443
Done!