BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012648
         (459 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
           109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
          Length = 771

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 10  LQWTQRIIPQSPSSS--QALASAISSPSSKRRSRSSCSSDIGP 50
           L+WTQ +I  + + S    L S  SSP+S +RS  SC+S+  P
Sbjct: 642 LEWTQNVISDAVADSIVAILLSVDSSPASVKRSSHSCNSNDHP 684


>sp|Q3A2F8|RSMH_PELCD Ribosomal RNA small subunit methyltransferase H OS=Pelobacter
           carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rsmH PE=3
           SV=1
          Length = 314

 Score = 33.5 bits (75), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 286 RHKFDSSSIKPFSVFSSRSGKTTSI--GGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIV 343
           R  F  SS+ P  V      +   +   G  GGGG  R I   T  DG +  +D  R  +
Sbjct: 3   REVFQHSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDREAL 62

Query: 344 PDGASQLSSFG 354
            +   QL+SFG
Sbjct: 63  EEAGRQLASFG 73


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,199,953
Number of Sequences: 539616
Number of extensions: 7141934
Number of successful extensions: 23764
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 23728
Number of HSP's gapped (non-prelim): 56
length of query: 459
length of database: 191,569,459
effective HSP length: 121
effective length of query: 338
effective length of database: 126,275,923
effective search space: 42681261974
effective search space used: 42681261974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)