Query 012648
Match_columns 459
No_of_seqs 93 out of 102
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13431 TPR_17: Tetratricopep 97.6 4.9E-05 1.1E-09 53.0 2.9 34 422-456 1-34 (34)
2 PF13414 TPR_11: TPR repeat; P 96.6 0.0021 4.6E-08 47.9 3.2 47 413-459 16-62 (69)
3 PF14559 TPR_19: Tetratricopep 96.6 0.0032 7E-08 46.7 4.0 45 413-458 4-48 (68)
4 PF13432 TPR_16: Tetratricopep 96.3 0.0052 1.1E-07 45.6 4.0 46 413-459 10-55 (65)
5 COG3063 PilF Tfp pilus assembl 95.8 0.0062 1.4E-07 60.3 2.8 45 414-459 83-127 (250)
6 PF13371 TPR_9: Tetratricopept 95.2 0.022 4.8E-07 42.8 3.4 44 414-458 9-52 (73)
7 PRK14720 transcript cleavage f 95.0 0.019 4E-07 65.3 3.7 44 414-459 130-173 (906)
8 TIGR02521 type_IV_pilW type IV 93.8 0.076 1.7E-06 44.7 3.9 45 414-459 79-123 (234)
9 cd00189 TPR Tetratricopeptide 93.6 0.12 2.7E-06 36.0 4.1 44 414-458 48-91 (100)
10 PF13428 TPR_14: Tetratricopep 93.5 0.081 1.8E-06 37.8 3.0 30 413-442 14-43 (44)
11 TIGR02552 LcrH_SycD type III s 92.9 0.14 3E-06 42.1 3.9 44 414-458 65-108 (135)
12 PF00244 14-3-3: 14-3-3 protei 92.3 0.18 3.9E-06 48.6 4.5 42 415-456 141-190 (236)
13 PF13429 TPR_15: Tetratricopep 92.0 0.14 3.1E-06 48.0 3.3 44 414-458 228-271 (280)
14 TIGR02521 type_IV_pilW type IV 92.0 0.2 4.3E-06 42.2 3.8 44 414-458 149-192 (234)
15 TIGR02552 LcrH_SycD type III s 91.8 0.29 6.2E-06 40.3 4.5 44 414-458 31-74 (135)
16 PRK10370 formate-dependent nit 91.3 0.26 5.6E-06 45.7 4.1 41 417-458 127-167 (198)
17 PRK15359 type III secretion sy 91.2 0.29 6.3E-06 42.8 4.2 44 414-458 72-115 (144)
18 cd00189 TPR Tetratricopeptide 91.0 0.5 1.1E-05 32.8 4.5 44 414-458 14-57 (100)
19 cd05804 StaR_like StaR_like; a 90.3 0.32 6.9E-06 46.2 3.9 43 415-458 163-209 (355)
20 PF12895 Apc3: Anaphase-promot 90.1 0.31 6.7E-06 38.2 3.1 46 412-458 1-48 (84)
21 PRK12370 invasion protein regu 90.1 0.3 6.5E-06 51.4 3.8 43 415-458 353-395 (553)
22 PLN03088 SGT1, suppressor of 89.7 0.41 8.8E-06 48.2 4.3 43 415-458 51-93 (356)
23 PRK10370 formate-dependent nit 89.7 0.37 8E-06 44.7 3.7 46 413-458 86-133 (198)
24 COG3063 PilF Tfp pilus assembl 89.6 0.28 6.1E-06 49.0 3.0 45 414-459 153-197 (250)
25 smart00386 HAT HAT (Half-A-TPR 89.3 0.65 1.4E-05 29.3 3.6 31 415-445 2-32 (33)
26 PRK15359 type III secretion sy 89.1 0.63 1.4E-05 40.7 4.5 47 412-459 36-82 (144)
27 smart00101 14_3_3 14-3-3 homol 88.7 0.64 1.4E-05 45.8 4.7 41 416-456 144-192 (244)
28 TIGR02795 tol_pal_ybgF tol-pal 88.4 0.64 1.4E-05 36.5 3.7 44 414-458 53-99 (119)
29 TIGR02917 PEP_TPR_lipo putativ 86.2 0.77 1.7E-05 46.8 3.8 43 415-458 852-894 (899)
30 TIGR02795 tol_pal_ybgF tol-pal 86.0 1.1 2.3E-05 35.3 3.8 44 414-458 16-62 (119)
31 PRK12370 invasion protein regu 85.5 0.93 2E-05 47.8 4.1 45 414-459 318-362 (553)
32 TIGR00990 3a0801s09 mitochondr 85.3 0.89 1.9E-05 48.0 3.9 45 414-459 379-423 (615)
33 TIGR00540 hemY_coli hemY prote 84.2 1.2 2.5E-05 45.1 4.0 42 417-459 316-359 (409)
34 PF13429 TPR_15: Tetratricopep 83.7 0.74 1.6E-05 43.2 2.3 44 413-457 159-202 (280)
35 PRK11189 lipoprotein NlpI; Pro 83.6 1.3 2.8E-05 43.0 3.9 43 415-458 113-155 (296)
36 PLN03088 SGT1, suppressor of 83.4 1.3 2.8E-05 44.7 3.9 45 413-458 15-59 (356)
37 PRK02603 photosystem I assembl 83.4 1.3 2.9E-05 39.1 3.6 46 413-458 85-136 (172)
38 PF13424 TPR_12: Tetratricopep 83.0 0.81 1.7E-05 34.9 1.8 46 413-459 18-70 (78)
39 PRK11189 lipoprotein NlpI; Pro 82.4 1.8 3.9E-05 42.0 4.4 44 414-458 78-121 (296)
40 PRK15179 Vi polysaccharide bio 81.6 1.5 3.2E-05 48.9 3.8 47 411-458 165-211 (694)
41 PRK11788 tetratricopeptide rep 81.2 1.7 3.7E-05 41.8 3.7 44 414-458 49-92 (389)
42 KOG1126 DNA-binding cell divis 80.2 1.4 3E-05 49.1 3.0 44 415-459 504-547 (638)
43 PRK09782 bacteriophage N4 rece 80.2 1.7 3.7E-05 50.1 3.9 44 414-458 623-666 (987)
44 TIGR00990 3a0801s09 mitochondr 80.1 1.9 4E-05 45.7 3.9 43 415-458 448-490 (615)
45 PRK10153 DNA-binding transcrip 78.4 2.2 4.7E-05 45.8 3.8 44 414-459 434-477 (517)
46 TIGR02917 PEP_TPR_lipo putativ 78.2 2.3 4.9E-05 43.5 3.7 42 417-459 820-861 (899)
47 PF00515 TPR_1: Tetratricopept 78.2 1.4 3.1E-05 29.0 1.6 21 413-433 14-34 (34)
48 PRK11447 cellulose synthase su 76.2 2.7 5.8E-05 48.4 3.9 46 413-459 282-327 (1157)
49 PRK15174 Vi polysaccharide exp 75.7 2.8 6.1E-05 45.5 3.8 44 414-458 298-341 (656)
50 PF07719 TPR_2: Tetratricopept 74.7 2.7 5.9E-05 27.2 2.2 20 414-433 15-34 (34)
51 PRK10747 putative protoheme IX 74.6 3.5 7.5E-05 41.8 3.8 45 414-459 308-352 (398)
52 PRK15174 Vi polysaccharide exp 74.6 3.7 8E-05 44.7 4.3 45 414-459 332-376 (656)
53 PRK11788 tetratricopeptide rep 74.4 3.5 7.6E-05 39.6 3.7 43 415-458 195-237 (389)
54 CHL00033 ycf3 photosystem I as 74.3 3.8 8.2E-05 35.9 3.6 31 415-445 87-117 (168)
55 PRK11447 cellulose synthase su 73.7 3.3 7.2E-05 47.6 3.9 45 414-459 617-661 (1157)
56 PRK09782 bacteriophage N4 rece 73.5 3.4 7.3E-05 47.8 3.9 45 414-459 657-701 (987)
57 PF13432 TPR_16: Tetratricopep 72.9 2.8 6.1E-05 30.9 2.1 23 412-434 43-65 (65)
58 CHL00033 ycf3 photosystem I as 72.8 5 0.00011 35.1 4.0 44 414-458 49-95 (168)
59 KOG0553 TPR repeat-containing 72.1 5.4 0.00012 41.1 4.5 35 414-448 95-129 (304)
60 COG5010 TadD Flp pilus assembl 72.0 3.8 8.3E-05 41.3 3.4 47 411-458 145-191 (257)
61 PF09655 Nitr_red_assoc: Conse 69.3 3.6 7.8E-05 38.4 2.4 55 107-168 60-115 (144)
62 PRK02603 photosystem I assembl 69.0 6 0.00013 35.0 3.6 44 414-458 49-95 (172)
63 KOG2002 TPR-containing nuclear 68.8 3.8 8.2E-05 47.7 2.9 86 372-458 207-293 (1018)
64 PRK10049 pgaA outer membrane p 68.4 5.2 0.00011 44.1 3.8 44 414-458 407-450 (765)
65 PF05843 Suf: Suppressor of fo 67.6 3.1 6.7E-05 40.5 1.7 79 371-459 16-94 (280)
66 PRK15179 Vi polysaccharide bio 65.8 6.5 0.00014 43.9 3.9 43 415-458 135-177 (694)
67 PF13414 TPR_11: TPR repeat; P 64.9 5.1 0.00011 29.7 2.0 27 432-459 1-27 (69)
68 KOG0547 Translocase of outer m 63.9 6 0.00013 43.7 3.1 64 394-458 452-526 (606)
69 KOG3824 Huntingtin interacting 62.8 9.7 0.00021 40.5 4.3 43 415-458 131-173 (472)
70 PF13181 TPR_8: Tetratricopept 61.0 5.1 0.00011 26.2 1.3 21 413-433 14-34 (34)
71 PRK10049 pgaA outer membrane p 59.3 10 0.00022 41.9 3.9 45 414-459 373-417 (765)
72 PRK10747 putative protoheme IX 59.0 11 0.00024 38.1 3.9 45 413-458 166-210 (398)
73 KOG0553 TPR repeat-containing 59.0 8.5 0.00018 39.8 3.0 22 414-435 163-184 (304)
74 TIGR03302 OM_YfiO outer membra 54.0 15 0.00033 33.3 3.5 45 414-458 84-138 (235)
75 TIGR03302 OM_YfiO outer membra 53.8 16 0.00035 33.1 3.7 46 413-459 46-94 (235)
76 PF03704 BTAD: Bacterial trans 53.4 23 0.0005 30.2 4.4 45 413-458 75-119 (146)
77 PLN03098 LPA1 LOW PSII ACCUMUL 52.9 15 0.00032 39.8 3.8 45 413-458 88-135 (453)
78 TIGR02664 nitr_red_assoc conse 52.8 10 0.00022 35.5 2.3 55 107-168 60-116 (145)
79 KOG4626 O-linked N-acetylgluco 51.4 15 0.00033 42.0 3.6 43 416-459 302-344 (966)
80 KOG0547 Translocase of outer m 50.6 16 0.00035 40.5 3.6 45 414-459 517-561 (606)
81 COG4783 Putative Zn-dependent 47.3 23 0.00051 38.7 4.2 42 414-456 354-395 (484)
82 PRK15363 pathogenicity island 46.8 24 0.00051 33.2 3.7 44 414-458 49-92 (157)
83 smart00028 TPR Tetratricopepti 46.6 20 0.00044 20.4 2.2 21 413-433 14-34 (34)
84 PLN02694 serine O-acetyltransf 46.5 34 0.00073 35.2 5.0 63 369-432 23-95 (294)
85 TIGR00540 hemY_coli hemY prote 46.2 29 0.00063 35.2 4.5 45 413-458 166-210 (409)
86 TIGR02996 rpt_mate_G_obs repea 45.7 28 0.0006 26.8 3.2 34 421-455 3-36 (42)
87 PRK15363 pathogenicity island 43.4 30 0.00065 32.6 3.8 45 414-459 83-127 (157)
88 cd05804 StaR_like StaR_like; a 42.1 26 0.00057 33.4 3.3 43 415-458 129-171 (355)
89 PF02184 HAT: HAT (Half-A-TPR) 41.5 37 0.00079 24.7 3.1 28 415-443 2-29 (32)
90 PF09295 ChAPs: ChAPs (Chs5p-A 41.4 30 0.00065 36.5 3.8 41 417-458 217-257 (395)
91 PRK10803 tol-pal system protei 40.2 34 0.00073 33.8 3.8 45 414-459 194-241 (263)
92 PF06552 TOM20_plant: Plant sp 39.5 23 0.00051 34.4 2.5 24 414-437 94-117 (186)
93 KOG0376 Serine-threonine phosp 39.4 16 0.00034 39.9 1.5 40 414-454 18-57 (476)
94 KOG3617 WD40 and TPR repeat-co 37.1 17 0.00036 42.8 1.3 33 426-459 845-882 (1416)
95 KOG1173 Anaphase-promoting com 37.0 23 0.0005 39.6 2.3 44 414-458 394-437 (611)
96 PRK14574 hmsH outer membrane p 36.7 35 0.00077 39.1 3.8 44 415-459 431-474 (822)
97 PF04733 Coatomer_E: Coatomer 34.5 38 0.00083 33.7 3.2 44 414-457 215-258 (290)
98 PRK15326 type III secretion sy 34.2 40 0.00087 29.0 2.8 22 425-446 32-53 (80)
99 PF06022 Cir_Bir_Yir: Plasmodi 33.9 40 0.00087 34.1 3.3 28 223-250 52-89 (280)
100 PF13374 TPR_10: Tetratricopep 33.4 35 0.00077 22.5 2.0 23 435-458 3-25 (42)
101 PRK14574 hmsH outer membrane p 32.2 45 0.00098 38.3 3.7 46 412-458 114-159 (822)
102 PF11155 DUF2935: Domain of un 30.7 1E+02 0.0023 26.7 4.9 52 369-433 6-59 (124)
103 PF14561 TPR_20: Tetratricopep 30.3 62 0.0014 27.1 3.4 36 421-457 9-44 (90)
104 PF13176 TPR_7: Tetratricopept 29.7 33 0.00072 23.6 1.4 21 413-433 12-34 (36)
105 KOG0548 Molecular co-chaperone 29.4 51 0.0011 36.6 3.4 61 378-441 339-399 (539)
106 COG4235 Cytochrome c biogenesi 28.3 71 0.0015 32.9 3.9 35 414-448 170-204 (287)
107 PF09976 TPR_21: Tetratricopep 27.9 83 0.0018 27.1 3.8 45 413-458 61-108 (145)
108 KOG2468 Dolichol kinase [Lipid 27.4 45 0.00097 36.7 2.5 29 222-250 264-294 (510)
109 PRK10803 tol-pal system protei 26.4 72 0.0016 31.6 3.5 43 415-458 158-203 (263)
110 PF12895 Apc3: Anaphase-promot 25.3 37 0.0008 26.5 1.1 43 414-458 39-81 (84)
111 PLN02789 farnesyltranstransfer 24.8 83 0.0018 31.9 3.7 42 417-458 89-131 (320)
112 TIGR01590 yir-bir-cir_Pla yir/ 24.8 71 0.0015 30.9 3.1 29 222-250 35-73 (199)
113 PF09976 TPR_21: Tetratricopep 24.0 1.1E+02 0.0024 26.4 3.9 11 448-458 131-141 (145)
114 PF12569 NARP1: NMDA receptor- 23.4 80 0.0017 34.5 3.5 68 375-447 10-85 (517)
115 KOG2002 TPR-containing nuclear 23.2 76 0.0017 37.7 3.4 43 416-459 146-188 (1018)
116 PRK10866 outer membrane biogen 23.0 95 0.0021 30.0 3.6 32 414-447 83-114 (243)
117 PF13174 TPR_6: Tetratricopept 22.9 79 0.0017 20.0 2.1 20 414-433 14-33 (33)
118 PF11547 E3_UbLigase_EDD: E3 u 22.8 76 0.0017 25.5 2.4 24 189-217 26-49 (53)
119 PLN02789 farnesyltranstransfer 22.7 1.1E+02 0.0025 31.0 4.3 41 417-458 125-165 (320)
120 cd02680 MIT_calpain7_2 MIT: do 21.9 1.1E+02 0.0024 25.7 3.3 47 408-457 14-66 (75)
121 PHA02265 hypothetical protein 21.4 1.3E+02 0.0028 26.8 3.7 28 406-443 60-87 (103)
122 KOG2758 Translation initiation 20.2 93 0.002 33.5 3.1 37 421-458 116-152 (432)
123 smart00777 Mad3_BUB1_I Mad3/BU 20.0 73 0.0016 28.8 2.0 40 419-459 82-123 (125)
No 1
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.61 E-value=4.9e-05 Score=52.96 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=30.9
Q ss_pred HHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhc
Q 012648 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLN 456 (459)
Q Consensus 422 ~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEe 456 (459)
.|+|+|+.||+|+..+-|||.+|+. .||+++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence 4999999999999999999998865 799999975
No 2
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.58 E-value=0.0021 Score=47.91 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=41.3
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
-.+|+.+..+|+++|+.||+|+.++-|.|.-.+...+++++|.++|+
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 35788999999999999999999999999987775448999998873
No 3
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.55 E-value=0.0032 Score=46.68 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=40.1
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+|+.+..+|++++..+|+|+-+.-++|+.+.. .+++++|++++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l 48 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELL 48 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3578899999999999999999999999999977 69999999876
No 4
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.34 E-value=0.0052 Score=45.60 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=41.1
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
..+|+.+...|+++|..+|+|+..+-++|..++ .+++++.|.++|+
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYE 55 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 457899999999999999999999999999997 5899999999873
No 5
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.80 E-value=0.0062 Score=60.33 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=39.1
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+.+.++++|++||..+|+|.-+|-||+-||+. ++-++.|-.||+
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~ 127 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFE 127 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHH
Confidence 456779999999999999999999999999998 558888877763
No 6
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.22 E-value=0.022 Score=42.76 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+|..+..+++++|..+|+++.++.+||.+++. .++++.|.++|
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l 52 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDL 52 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHH
Confidence 467889999999999999999999999999977 67888887765
No 7
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.03 E-value=0.019 Score=65.32 Aligned_cols=44 Identities=9% Similarity=0.204 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
..++++...|+++|..||+|+..|.|||-+|-+. |+++|++||+
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~ 173 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLK 173 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 6678899999999999999999999999999887 9999999984
No 8
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.83 E-value=0.076 Score=44.72 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+++.+..+|+++++.+|+++..+.|++.++.. .+++++|+++|+
T Consensus 79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~ 123 (234)
T TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQFE 123 (234)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence 466788999999999999999999999988754 788999988763
No 9
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.64 E-value=0.12 Score=35.96 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|++++..+|.++..+.++|..+.. .+|+++|.++|
T Consensus 48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~ 91 (100)
T cd00189 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEAY 91 (100)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHHH
Confidence 456677788888888888888777788876654 57788887765
No 10
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.48 E-value=0.081 Score=37.77 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=27.5
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHH
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQ 442 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAq 442 (459)
..++++++..|+++|+.+|+|+..+.+||+
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999986
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.88 E-value=0.14 Score=42.14 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|++++..+|.|+-++-|+|..+ ...+|+++|..+|
T Consensus 65 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~ 108 (135)
T TIGR02552 65 KEYEEAIDAYALAAALDPDDPRPYFHAAECL-LALGEPESALKAL 108 (135)
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 5678899999999999999999999999855 5578999998876
No 12
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.32 E-value=0.18 Score=48.62 Aligned_cols=42 Identities=26% Similarity=0.471 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648 415 DYFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN 456 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe 456 (459)
-..++...|++|++ ..|.||+-|+ ||+-|+|++.+|.++|-+
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ 190 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIE 190 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 34678899999886 5899999988 999999999999999965
No 13
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.01 E-value=0.14 Score=47.97 Aligned_cols=44 Identities=30% Similarity=0.353 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+..+-.+|++++..+|+||.++.+||..|.+ .|..++|.+++
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~-~g~~~~A~~~~ 271 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQ-AGRKDEALRLR 271 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 467788999999999999999999999999965 78899998876
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.98 E-value=0.2 Score=42.23 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|++++..+|+++..+.++|+.++. .+|+++|.++|
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~ 192 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDARAYL 192 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 456677788888888888887777777777655 67778777765
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.78 E-value=0.29 Score=40.30 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=39.0
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+..+..+|++++..+|+|+-++.|.|++++. .+|+++|.++|
T Consensus 31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~ 74 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAY 74 (135)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456778899999999999999999999999976 48899999876
No 16
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.28 E-value=0.26 Score=45.69 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=22.9
Q ss_pred hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
+.+...|++++..||+|+-.+.|.|.-+++ .+|+++|..+|
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~~~ 167 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHHHH
Confidence 455555555555555555555555544433 55666666554
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.18 E-value=0.29 Score=42.79 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.++..+...|++++..+|+|+-.+-|.|.-|.. .|+++.|.++|
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~ 115 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAF 115 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 456778888888888888888888888887765 58888888776
No 18
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=90.99 E-value=0.5 Score=32.84 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+..+..+|++++..+|+++.++.++|..+.. .++++.|.++|
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~ 57 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDY 57 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 467788999999999999999999999998876 58899999887
No 19
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=90.29 E-value=0.32 Score=46.19 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHhhhcCCCChHhH-h---HHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLL-A---NYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL-~---NYAqFL~~V~~D~drAEeYy 458 (459)
+++.+..+|++++..+|.++.+. . +.|. ++.-+||+++|.++|
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~-~~~~~G~~~~A~~~~ 209 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL-FYLERGDYEAALAIY 209 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHH-HHHHCCCHHHHHHHH
Confidence 34455555666665555433221 1 2333 234456666665554
No 20
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.13 E-value=0.31 Score=38.20 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=37.8
Q ss_pred cchhhhhHHHHHHHhhhcCCC--ChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 412 DYADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 412 d~~~~~rtE~~Yk~~I~~dP~--N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
|...|+.+..+|+++++.+|. |+.++-+.|+=++. .++|++|.+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~ 48 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELL 48 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 356789999999999999995 57777778988877 78999998876
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=90.06 E-value=0.3 Score=51.42 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
+++.+..+|+++|+.+|+|+..+.++|..+.. .+++++|.++|
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~ 395 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI 395 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 34555666666666666666666666555433 45566665554
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=89.72 E-value=0.41 Score=48.16 Aligned_cols=43 Identities=7% Similarity=0.021 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.|..+..+|+++|..+|+|+..+-+.|..++. .+||+.|.++|
T Consensus 51 ~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~~ 93 (356)
T PLN03088 51 NFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAAL 93 (356)
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 34455555666666666666666666554443 45666665554
No 23
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=89.65 E-value=0.37 Score=44.66 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=39.6
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhh--HHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD--YDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D--~drAEeYy 458 (459)
-.+++.+...|++++..+|+|+-++.|||.-|+.-.++ +++|.+.|
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 46788999999999999999999999999988766666 58887765
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.58 E-value=0.28 Score=49.01 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=40.6
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
...+++++||+|+|+.||+||+.+.-=|+-+|+ +|||-.|--||+
T Consensus 153 gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~-~~~y~~Ar~~~~ 197 (250)
T COG3063 153 GQFDQAEEYLKRALELDPQFPPALLELARLHYK-AGDYAPARLYLE 197 (250)
T ss_pred CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh-cccchHHHHHHH
Confidence 447889999999999999999999999999988 899999987763
No 25
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.25 E-value=0.65 Score=29.35 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHH
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLY 445 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~ 445 (459)
+.+++...|+++|...|+++-+.-.|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 3567888999999999999999999999974
No 26
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.07 E-value=0.63 Score=40.72 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=41.1
Q ss_pred cchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 412 d~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.-..++.+..+|++++..+|.|+-.+.|.|.-+.. .++++.|.++|.
T Consensus 36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~ 82 (144)
T PRK15359 36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYG 82 (144)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 34567789999999999999999999999998755 899999998873
No 27
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=88.66 E-value=0.64 Score=45.80 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=35.2
Q ss_pred hhhHHHHHHHhhh-----cCCCChHhHh---HHHHHHHHHhhhHHHhhc
Q 012648 416 YFRTELLYQTGLA-----QEPNDPLLLA---NYAQFLYIVAHDYDRYLN 456 (459)
Q Consensus 416 ~~rtE~~Yk~~I~-----~dP~N~LlL~---NYAqFL~~V~~D~drAEe 456 (459)
-+++...|+.|++ ..|.||+-|+ ||+-|+|++.+|.++|-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~ 192 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACN 192 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4578899999986 4599999886 999999999999999864
No 28
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=88.36 E-value=0.64 Score=36.52 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHhhhcCCCC---hHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N---~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|++++..+|++ +..+-+.|..+.. .+|++.|..+|
T Consensus 53 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~ 99 (119)
T TIGR02795 53 GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LGDKEKAKATL 99 (119)
T ss_pred ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hCChHHHHHHH
Confidence 45777899999999999987 5567888887765 78888888876
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=86.19 E-value=0.77 Score=46.81 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.++.+..+|+++|+.+|+|+.++-|||+.|+. .++++.|+++|
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~ 894 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLA-TGRKAEARKEL 894 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34556666666666666666666666665544 45566666654
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=86.00 E-value=1.1 Score=35.29 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHhhhcCCCCh---HhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~---LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..++.+..+|++++..+|+++ ..+-++|..++. .+|+++|.++|
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~ 62 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAF 62 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHH
Confidence 355666666677766666663 344555555544 55666666665
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=85.48 E-value=0.93 Score=47.80 Aligned_cols=45 Identities=9% Similarity=0.044 Sum_probs=39.4
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.++..+..+|+++|+.||+|+..+.++|..+ ...+|+++|+++|+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~-~~~g~~~~A~~~~~ 362 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLIN-TIHSEYIVGSLLFK 362 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccCHHHHHHHHH
Confidence 4578999999999999999999999998765 45889999999874
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=85.29 E-value=0.89 Score=48.00 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=36.5
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+++.+..+|+++|+.+|+|+.++.|.|+.++ ..+|++.|.++|+
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~ 423 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQ 423 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 46777888888999999999988888888664 4788888888773
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=84.19 E-value=1.2 Score=45.08 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=37.8
Q ss_pred hhHHHHHHHhhhcCCCCh--HhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 417 FRTELLYQTGLAQEPNDP--LLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 417 ~rtE~~Yk~~I~~dP~N~--LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.....+.++++..+|+|| -++-.||+.++. .+++++|.+||+
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~~~~A~~~le 359 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cccHHHHHHHHH
Confidence 567889999999999999 999999999965 889999999985
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=83.73 E-value=0.74 Score=43.23 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=33.9
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNF 457 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeY 457 (459)
..+.+.+...|+++|+.+|+|+-++.+|+.+|-+ .+++++|.+.
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~~ 202 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEAREA 202 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHHH
Confidence 4567889999999999999999999999988854 5566665543
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=83.56 E-value=1.3 Score=42.98 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
+++.+...|+++|+.+|+|+-.+.|.+..++. .++++.|.++|
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~ 155 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDL 155 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 44455555555555555555555555555443 34555554443
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=83.45 E-value=1.3 Score=44.67 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=38.0
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+|..+..+|+++|+.+|+|+.++.|+|+.+.. .++++.|..+|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~ 59 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADA 59 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3577788999999999999999999999988755 68888888776
No 37
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=83.37 E-value=1.3 Score=39.10 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=35.8
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh------hhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA------HDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~------~D~drAEeYy 458 (459)
-..++.+..+|+++|..+|+++-.+.|++..+.... ++++.|+.+|
T Consensus 85 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~ 136 (172)
T PRK02603 85 NGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136 (172)
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence 356788999999999999999999999998886643 3455554443
No 38
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=82.97 E-value=0.81 Score=34.94 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=33.4
Q ss_pred chhhhhHHHHHHHhhhc----CCCC---hHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 413 YADYFRTELLYQTGLAQ----EPND---PLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~----dP~N---~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
-.+|+++..+|+++|.. .+.+ +..+.|.|... .-.+|+++|++||+
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECY-YRLGDYEEALEYYQ 70 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 35788999999999954 2233 44677777765 55899999999973
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=82.40 E-value=1.8 Score=42.03 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+..+...|+++|+.+|+|+..+-|.|..+ ...+|++.|.+.|
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~-~~~g~~~~A~~~~ 121 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYL-TQAGNFDAAYEAF 121 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHCCCHHHHHHHH
Confidence 4566778889999999999999999999755 6689999999876
No 40
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=81.58 E-value=1.5 Score=48.90 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=41.3
Q ss_pred ccchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 411 dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..-..|+.++++|++++..+|+++-.|-+||.-|+. +|+.+.|...|
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~ 211 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWRARDVL 211 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 456788999999999999999999999999999965 89999988766
No 41
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=81.25 E-value=1.7 Score=41.78 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|++|++.+|+|+-.+.+.|.++. ..+++++|.++|
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~ 92 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIH 92 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHH
Confidence 34556888888888888888877777777553 467777777665
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.24 E-value=1.4 Score=49.09 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.++.+|-+||+|++.||.|..++.=+.+++.+ .++.|+|..+|+
T Consensus 504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLYE 547 (638)
T ss_pred hhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHHH
Confidence 45668999999999999999999999999976 788999988874
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=80.16 E-value=1.7 Score=50.13 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|+++|+.+|+|+.++.|++.+|.+ .++++.|.++|
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l 666 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 456677788888888888888888888887766 56778777765
No 44
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=80.08 E-value=1.9 Score=45.67 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
+++.+..+|++++..+|+++.++.+|+..+.. .+|+++|.++|
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~A~~~~ 490 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLD-QNKFDEAIEKF 490 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-ccCHHHHHHHH
Confidence 46667777777777777777777777776644 66777777766
No 45
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=78.41 E-value=2.2 Score=45.82 Aligned_cols=44 Identities=9% Similarity=-0.109 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+++.+..+|++||+.+| |.+.+..+++++ +..|++++|.++|+
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~-~~~G~~~eA~~~~~ 477 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVY-ELKGDNRLAADAYS 477 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 578889999999999999 577777777765 88999999999884
No 46
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=78.24 E-value=2.3 Score=43.51 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.++..+|+++++.+|+|+-++.|+|..++. .++++.|.+||+
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~ 861 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 347778888888888888888888877544 688888888763
No 47
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.15 E-value=1.4 Score=29.05 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.8
Q ss_pred chhhhhHHHHHHHhhhcCCCC
Q 012648 413 YADYFRTELLYQTGLAQEPND 433 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N 433 (459)
-.+++.+..+|+++|+.||+|
T Consensus 14 ~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 14 LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp TT-HHHHHHHHHHHHHHSTTH
T ss_pred hCCchHHHHHHHHHHHHCcCC
Confidence 356888999999999999986
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=76.15 E-value=2.7 Score=48.39 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=40.4
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
-.+++.+..+|+++|..+|+|+-++.+.|..+. -.+|+++|++||+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~ 327 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFE 327 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 356788999999999999999999999997665 4799999999884
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=75.73 E-value=2.8 Score=45.53 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|++++..+|+|+..+.|+|+.+.. .++++.|.++|
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA~~~l 341 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAASDEF 341 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 355667777777777777777777777776654 56777777665
No 50
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.72 E-value=2.7 Score=27.21 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHhhhcCCCC
Q 012648 414 ADYFRTELLYQTGLAQEPND 433 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N 433 (459)
.++..+..+|+++|..+|+|
T Consensus 15 ~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 15 GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp T-HHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHCcCC
Confidence 46788999999999999997
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=74.57 E-value=3.5 Score=41.75 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+.++.-...++.+..+|+||.++--||+.+.. .+|+++|++||+
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A~~~le 352 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEASLAFR 352 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 456667888888999999999999999998865 788999999884
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=74.56 E-value=3.7 Score=44.67 Aligned_cols=45 Identities=9% Similarity=-0.062 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+++.+...|++++..+|+++..+.+.|..| ...++++.|.++|+
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al-~~~G~~deA~~~l~ 376 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAAL-LQAGKTSEAESVFE 376 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHCCCHHHHHHHHH
Confidence 5667788888999999998887666666655 45788898888773
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=74.36 E-value=3.5 Score=39.65 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
+++.+..+|+++++.+|++.-.+-++|+.+.. .+++++|.++|
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 237 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAAAIEAL 237 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 44455555555555555555444444444433 45555555544
No 54
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=74.35 E-value=3.8 Score=35.92 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHH
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLY 445 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~ 445 (459)
.++.+..+|++++..+|.++..+.|-+..++
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3344444555555555555444444444443
No 55
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=73.72 E-value=3.3 Score=47.63 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=39.2
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+++.+..+|+++|+.+|+|+-.+-|.|+.+.. .+|+++|+++|+
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~-~g~~~eA~~~l~ 661 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIA-QGDLAAARAQLA 661 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 567889999999999999999999999987655 699999998873
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=73.47 E-value=3.4 Score=47.83 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=39.7
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+++.+..+|+++|+.+|+|+.++-|.|..+ .-.+|++.|+++|+
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al-~~lGd~~eA~~~l~ 701 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVN-QRLDDMAATQHYAR 701 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHH
Confidence 3677788899999999999999999999877 56899999999874
No 57
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=72.92 E-value=2.8 Score=30.94 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=18.5
Q ss_pred cchhhhhHHHHHHHhhhcCCCCh
Q 012648 412 DYADYFRTELLYQTGLAQEPNDP 434 (459)
Q Consensus 412 d~~~~~rtE~~Yk~~I~~dP~N~ 434 (459)
.-.+++.+..+|+++|+.+|+||
T Consensus 43 ~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 43 QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HcCCHHHHHHHHHHHHHHCcCCC
Confidence 34678889999999999999997
No 58
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=72.76 E-value=5 Score=35.15 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHhhhcCCC---ChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPN---DPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~---N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+|+.+..+|++++...|+ .+..+.|.|..+..... ++.|.++|
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~ 95 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKALEYY 95 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 4567788888888877665 34577788777776664 34555554
No 59
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.11 E-value=5.4 Score=41.14 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA 448 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~ 448 (459)
.+|..+-..|-+||+.+|+||.++.|=|+=+-.+.
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg 129 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG 129 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Confidence 45777888999999999999999999998776654
No 60
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=71.96 E-value=3.8 Score=41.29 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=40.5
Q ss_pred ccchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 411 dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
|.-.+++.++.-|.++++..||+|..+.|-+-- |.+++|++.|+.|+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms-~~L~gd~~~A~~ll 191 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMS-LLLRGDLEDAETLL 191 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHH-HHHcCCHHHHHHHH
Confidence 445667778999999999999999999999854 57799999999875
No 61
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=69.30 E-value=3.6 Score=38.43 Aligned_cols=55 Identities=18% Similarity=0.399 Sum_probs=38.6
Q ss_pred hhhhhhhhccCC-CCCCCCCCCCCCCCCCccchhchhhhhhcccccccchhHHHHHHHHhhhh
Q 012648 107 NETNCRDNAVNS-ESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQD 168 (459)
Q Consensus 107 F~~~i~ela~~~-~~~~~d~~~~~~~p~W~~~~i~~~siErkansV~lPlSLRmiKRK~qw~E 168 (459)
|-..+++|.... +....++.++..| +|-....+|..|..||...++++++. ||.+
T Consensus 60 yr~~L~~li~~~~~~~~~~l~~~~~p-~W~~~~~vP~~v~~ka~~~gv~~t~~------qW~~ 115 (144)
T PF09655_consen 60 YREFLQELIRTHAGGPAKDLPPDPNP-AWQDPDAVPEAVQEKAQEFGVPLTLE------QWAA 115 (144)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCCCc-cccccCcCcHHHHHHHHHcCCCCCHH------HHhc
Confidence 444556665322 2334556554444 79555899999999999999999974 8987
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=68.97 E-value=6 Score=35.02 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHhhhcCCCC---hHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N---~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.+..+|+++|..+|+. +..+-|+|.-+.. .+++++|.++|
T Consensus 49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 95 (172)
T PRK02603 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYY 95 (172)
T ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 56778899999999887753 5788888887765 79999999886
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=68.78 E-value=3.8 Score=47.73 Aligned_cols=86 Identities=19% Similarity=0.347 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhccc-cccCCCHHHHhhhccccccccCcccchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhh
Q 012648 372 LNLWNSIVDEASQMQV-TDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD 450 (459)
Q Consensus 372 ~~lWnsmveEAs~MQ~-~~e~lD~et~~~lVAPV~a~lE~dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D 450 (459)
.-+|+.++.|-.+.-- +.-.|||.....+|+=-.+.+..-|...|...-.+.+++..+||+||.+|.=-|..+| +++|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hccc
Confidence 5588877765332211 4568999999999999999999999999999999999999999999998766666654 4888
Q ss_pred HHHhhccc
Q 012648 451 YDRYLNFL 458 (459)
Q Consensus 451 ~drAEeYy 458 (459)
|.++.+.+
T Consensus 286 y~~v~~la 293 (1018)
T KOG2002|consen 286 YERVWHLA 293 (1018)
T ss_pred HHHHHHHH
Confidence 88877653
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=68.45 E-value=5.2 Score=44.11 Aligned_cols=44 Identities=11% Similarity=-0.061 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+++++..|+++|+.+|+|+.++-..|. +++-.+|+++||..+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~-~al~~~~~~~A~~~~ 450 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAW-TALDLQEWRQMDVLT 450 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHH-HHHHhCCHHHHHHHH
Confidence 44667777777777777777777777776 445566777777654
No 65
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=67.64 E-value=3.1 Score=40.52 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhccccccCCCHHHHhhhccccccccCcccchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhh
Q 012648 371 ELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD 450 (459)
Q Consensus 371 E~~lWnsmveEAs~MQ~~~e~lD~et~~~lVAPV~a~lE~dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D 450 (459)
-..-|..+.++|-+ ......++...+ |.+|-..+.+...+..-|++++..-|.|+.+.-.|+.||-.. +|
T Consensus 16 g~~~aR~vF~~a~~----~~~~~~~vy~~~-----A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~-~d 85 (280)
T PF05843_consen 16 GIEAARKVFKRARK----DKRCTYHVYVAY-----ALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL-ND 85 (280)
T ss_dssp HHHHHHHHHHHHHC----CCCS-THHHHHH-----HHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred ChHHHHHHHHHHHc----CCCCCHHHHHHH-----HHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-Cc
Confidence 34456667777652 334445555543 677766667778899999999999999999999999999874 78
Q ss_pred HHHhhcccC
Q 012648 451 YDRYLNFLS 459 (459)
Q Consensus 451 ~drAEeYyk 459 (459)
.+.|-..|+
T Consensus 86 ~~~aR~lfe 94 (280)
T PF05843_consen 86 INNARALFE 94 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877663
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=65.83 E-value=6.5 Score=43.94 Aligned_cols=43 Identities=2% Similarity=-0.223 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.++.+...|++++..+|+|+..+.++|..|-+ -+.|++|+++|
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y 177 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACF 177 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 34556667777777777777777777777755 46777777776
No 67
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=64.90 E-value=5.1 Score=29.73 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=24.1
Q ss_pred CChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 432 NDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 432 ~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.||..+.++|+.++. .+|+++|++||+
T Consensus 1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~ 27 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFE 27 (69)
T ss_dssp TSHHHHHHHHHHHHH-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 478999999999988 999999999984
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.91 E-value=6 Score=43.69 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=53.5
Q ss_pred HHHHhhhcccccc-----ccCcccchhhhhHHHHHHHhhhcCCC------ChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 394 HETMERFVSPVTA-----NIEADDYADYFRTELLYQTGLAQEPN------DPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 394 ~et~~~lVAPV~a-----~lE~dd~~~~~rtE~~Yk~~I~~dP~------N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.|++++|=.-+|+ +|-+ |...++.++.+|.++|+.+|. |+-.|-|=|-.+.+-++|+++|++.+
T Consensus 452 ee~kkkFP~~~Evy~~fAeiLt-DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 452 EEAKKKFPNCPEVYNLFAEILT-DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred HHHHHhCCCCchHHHHHHHHHh-hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHH
Confidence 4677777665554 4553 677899999999999999999 99999999999999999999998764
No 69
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.85 E-value=9.7 Score=40.48 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+++-..+..|+..+|.||-+|--|+||+.. .+|.-.|..||
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y 173 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCY 173 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhh
Confidence 34456667777777777777777777777743 57777777666
No 70
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=61.04 E-value=5.1 Score=26.18 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.6
Q ss_pred chhhhhHHHHHHHhhhcCCCC
Q 012648 413 YADYFRTELLYQTGLAQEPND 433 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N 433 (459)
-.+++.+..+|+++++.+|+|
T Consensus 14 ~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 14 LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp TTSHHHHHHHHHHHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHhhCCCC
Confidence 357888999999999999976
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=59.33 E-value=10 Score=41.93 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+++.+..+|++++..+|+|+-++-+.|. ++..++++++|++.|+
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~-l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYAS-VLQARGWPRAAENELK 417 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHH
Confidence 56777888888888888888888888888 5567888888887763
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=59.01 E-value=11 Score=38.13 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=32.0
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
-.+++.+..+|+++++.+|+|+-.+.=-++.+ .-.+|.++|.+.+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~-~~~gdw~~a~~~l 210 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAY-IRTGAWSSLLDIL 210 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 35667788888888888888886666555544 4468888887654
No 73
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.98 E-value=8.5 Score=39.76 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHhhhcCCCChH
Q 012648 414 ADYFRTELLYQTGLAQEPNDPL 435 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~L 435 (459)
..|..+.++|||+|+.||+|..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHH
Confidence 3455678889999999999993
No 74
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=54.05 E-value=15 Score=33.28 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHHhhhcCCCChHh---HhHHHHHHHHH-------hhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLL---LANYAQFLYIV-------AHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~Ll---L~NYAqFL~~V-------~~D~drAEeYy 458 (459)
.+++.+..+|+++|+.+|+|+.. +-+-+..+++. .++++.|.++|
T Consensus 84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 57888999999999999999974 33333333332 36788887776
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=53.85 E-value=16 Score=33.05 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=34.0
Q ss_pred chhhhhHHHHHHHhhhcCCCChHh---HhHHHHHHHHHhhhHHHhhcccC
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLL---LANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~Ll---L~NYAqFL~~V~~D~drAEeYyk 459 (459)
-..++.+..+|++++..+|+|+.. +-+-|+- +.-.++++.|.++|+
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~-~~~~~~~~~A~~~~~ 94 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYA-YYKSGDYAEAIAAAD 94 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH-HHhcCCHHHHHHHHH
Confidence 345677889999999999999842 3444444 455789999998873
No 76
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=53.39 E-value=23 Score=30.16 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=36.3
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
-.+++.+..+++++|..||.|--+..-..+.+.. .|++..|.++|
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y 119 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVY 119 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHH
Confidence 4578899999999999999999998888887755 78888888877
No 77
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=52.88 E-value=15 Score=39.83 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=36.5
Q ss_pred chhhhhHHHHHHHhhhcCCCChH---hHhHHHHHHHHHhhhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPL---LLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~L---lL~NYAqFL~~V~~D~drAEeYy 458 (459)
-.+|+.+-..|+++|+.||+++. .+.|=|-.+-. .++++.|.++|
T Consensus 88 lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~L 135 (453)
T PLN03098 88 KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCL 135 (453)
T ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 35688899999999999999984 47787776654 68888888876
No 78
>TIGR02664 nitr_red_assoc conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown.
Probab=52.80 E-value=10 Score=35.55 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=37.7
Q ss_pred hhhhhhhhccCC-CCCCCCCCCCCCCCCCccchhchhhhhhcccccc-cchhHHHHHHHHhhhh
Q 012648 107 NETNCRDNAVNS-ESESRDSRDGFVDPPWEEDEIIQESIERKANSVD-LPLSLRIIKRKLQWQD 168 (459)
Q Consensus 107 F~~~i~ela~~~-~~~~~d~~~~~~~p~W~~~~i~~~siErkansV~-lPlSLRmiKRK~qw~E 168 (459)
|-..+++|+... +....++.+ ...|+|-....+|..|..||..++ +-+++. ||.+
T Consensus 60 yr~~L~~l~~~~a~~~~~~l~~-~~~paW~~~~~iP~~v~~~a~~~~~~~~t~~------qW~~ 116 (145)
T TIGR02664 60 YREYLRDLLRTHADTPPSDLPP-DEHAAWQSVSALPDAIVAQAGEVGLVALTAS------QWAT 116 (145)
T ss_pred HHHHHHHHHHHHcCCCCcCCCC-CCCccccccccCCHHHHHHHHHhCCCCCCHH------HHhc
Confidence 455566666322 333444544 234679777789999999999998 777774 8987
No 79
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.36 E-value=15 Score=42.03 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=38.5
Q ss_pred hhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 416 ~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+-+-..|||+|+.+|+=|....|-|.=|++. |+.+.||.||+
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYn 344 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNLANALKDK-GSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-cchHHHHHHHH
Confidence 45567789999999999999999999999995 99999999984
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.60 E-value=16 Score=40.53 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=42.2
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.++.+++.+..+||+.||..-+-..--|||.-+ +++.++|-|||+
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ-~~~i~eAielFE 561 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQ-RGKIDEAIELFE 561 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 788999999999999999999999999999966 999999999985
No 81
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=47.31 E-value=23 Score=38.70 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLN 456 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEe 456 (459)
..+..+.++||+++..+|+++++-=||||-|.+. ++..+|..
T Consensus 354 nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~-g~~~eai~ 395 (484)
T COG4783 354 NKAKEAIERLKKALALDPNSPLLQLNLAQALLKG-GKPQEAIR 395 (484)
T ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc-CChHHHHH
Confidence 4567799999999999999999999999998764 44555543
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=46.82 E-value=24 Score=33.24 Aligned_cols=44 Identities=5% Similarity=-0.038 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++.++.+|+.....||.|+...-|.|-=+ +.+++|..|.+.|
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY 92 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAY 92 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 4555566666666666666666665555432 4455666655554
No 83
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=46.63 E-value=20 Score=20.35 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=17.1
Q ss_pred chhhhhHHHHHHHhhhcCCCC
Q 012648 413 YADYFRTELLYQTGLAQEPND 433 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N 433 (459)
..++..+..+|+++|..+|++
T Consensus 14 ~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 14 LGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HhhHHHHHHHHHHHHccCCCC
Confidence 356788889999999999864
No 84
>PLN02694 serine O-acetyltransferase
Probab=46.55 E-value=34 Score=35.22 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhcccc---------ccCCCHHHHhhhcccccc-ccCcccchhhhhHHHHHHHhhhcCCC
Q 012648 369 EEELNLWNSIVDEASQMQVT---------DESLDHETMERFVSPVTA-NIEADDYADYFRTELLYQTGLAQEPN 432 (459)
Q Consensus 369 eeE~~lWnsmveEAs~MQ~~---------~e~lD~et~~~lVAPV~a-~lE~dd~~~~~rtE~~Yk~~I~~dP~ 432 (459)
+|+-.||+.|-+||...-+. ...|.|+++..-+|=+=+ +|... ........+.+..+++.+|.
T Consensus 23 ~~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~il~~~~~~~al~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 95 (294)
T PLN02694 23 EEAAWLWTQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSS-TLLSTLLYDLFLNTFSSDPS 95 (294)
T ss_pred ccchHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCcCHHHHHHHHHHHHhCCC-cCCHHHHHHHHHHHHHHCHH
Confidence 34445999999999876552 346778777766655444 45433 33445566777777777764
No 85
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=46.16 E-value=29 Score=35.23 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=36.7
Q ss_pred chhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+++.+...++++++.+|+|+-+|.=+++.+ .-.+|++.|.+++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~-~~~~d~~~a~~~l 210 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAY-IRSGAWQALDDII 210 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 35577888899999999999998888777665 5689999988765
No 86
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=45.71 E-value=28 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=29.0
Q ss_pred HHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhh
Q 012648 421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYL 455 (459)
Q Consensus 421 ~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAE 455 (459)
.-+-++|.++|++--.--=||.+|-+ ++|-+|||
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e-~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDE-HGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHHh
Confidence 34568899999999999999999966 88888886
No 87
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=43.44 E-value=30 Score=32.57 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+|..+-..|++++..+|+||...-|=|+=+ ..-||.+.|++.|+
T Consensus 83 g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~-L~lG~~~~A~~aF~ 127 (157)
T PRK15363 83 KHWGEAIYAYGRAAQIKIDAPQAPWAAAECY-LACDNVCYAIKALK 127 (157)
T ss_pred hhHHHHHHHHHHHHhcCCCCchHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 4677888999999999999999999888765 55788998888763
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=42.12 E-value=26 Score=33.43 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+++++.+|+++++.+|+|+..+.++|..+++ .++++.|+++|
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l 171 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFM 171 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34556666666666666666666666666655 56666666554
No 89
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.47 E-value=37 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHH
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQF 443 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqF 443 (459)
+++|+-..|++.|...|+-. ..=.||+|
T Consensus 2 E~dRAR~IyeR~v~~hp~~k-~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVK-NWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCCch-HHHHHHHh
Confidence 68999999999999998744 44468888
No 90
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=41.41 E-value=30 Score=36.52 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=34.4
Q ss_pred hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.++=...+++|..+|.++.+|.-+|+||-. ++|++-|.++.
T Consensus 217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA 257 (395)
T PF09295_consen 217 VEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA 257 (395)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 455667889999999999999999999965 77788887653
No 91
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.23 E-value=34 Score=33.82 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHhhhcCCCCh---HhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~---LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
.+|+.+-.+|+++|...|+++ -.|-+-+..+ .-.+|+++|.++|+
T Consensus 194 g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~-~~~g~~~~A~~~~~ 241 (263)
T PRK10803 194 GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM-QDKGDTAKAKAVYQ 241 (263)
T ss_pred CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 356667777788887777653 3344434433 34678888877763
No 92
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=39.52 E-value=23 Score=34.40 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhH
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLL 437 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL 437 (459)
.-|+++..||++++++||+|.+..
T Consensus 94 ~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 94 EYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHH
Confidence 348899999999999999999853
No 93
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.45 E-value=16 Score=39.94 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHh
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRY 454 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drA 454 (459)
..|+.+-+.|-++|+.||||+.+.+|=| +.+.+-.|+-.|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa-~a~lK~e~~~~A 57 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRA-LAHLKVESFGGA 57 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhh-hhheeechhhhH
Confidence 4678889999999999999999999998 666665555444
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=37.15 E-value=17 Score=42.82 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=24.7
Q ss_pred hhhc-CCCChHhHh----HHHHHHHHHhhhHHHhhcccC
Q 012648 426 GLAQ-EPNDPLLLA----NYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 426 ~I~~-dP~N~LlL~----NYAqFL~~V~~D~drAEeYyk 459 (459)
|++. +-.|-+.|+ |||+.| +-|+|..+|.|||+
T Consensus 845 A~eiAE~~DRiHLr~Tyy~yA~~L-ear~Di~~AleyyE 882 (1416)
T KOG3617|consen 845 AFEIAETKDRIHLRNTYYNYAKYL-EARRDIEAALEYYE 882 (1416)
T ss_pred HHHHHhhccceehhhhHHHHHHHH-HhhccHHHHHHHHH
Confidence 4443 445555554 799999 56999999999996
No 95
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=23 Score=39.62 Aligned_cols=44 Identities=23% Similarity=0.438 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+..++.||++|+...|++||+|-- ---+.=-..+|..|..||
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~E-lgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHE-LGVVAYTYEEYPEALKYF 437 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhh-hhheeehHhhhHHHHHHH
Confidence 35678999999999999999998744 333333377888888887
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=36.74 E-value=35 Score=39.11 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
+...+++.+++++...|+|+-++-++|... ..|+..++|+++||
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~-~~Rg~p~~A~~~~k 474 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIY-LARDLPRKAEQELK 474 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCCHHHHHHHHH
Confidence 345688999999999999999999999854 88999999999874
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=34.46 E-value=38 Score=33.75 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNF 457 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeY 457 (459)
.+|+.++..++.+++.||+||-+|.|-+-.=....++.+.+++|
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 45667788888888888998888888765544444443555554
No 98
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=34.21 E-value=40 Score=28.97 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=17.7
Q ss_pred HhhhcCCCChHhHhHHHHHHHH
Q 012648 425 TGLAQEPNDPLLLANYAQFLYI 446 (459)
Q Consensus 425 ~~I~~dP~N~LlL~NYAqFL~~ 446 (459)
+.++.+|.||.+|++|=.-|-+
T Consensus 32 ~~l~~~pdnP~~LA~~Qa~l~e 53 (80)
T PRK15326 32 DKLAAKPSDPALLAAYQSKLSE 53 (80)
T ss_pred HHhhcCCCCHHHHHHHHHHHHH
Confidence 3467899999999999776643
No 99
>PF06022 Cir_Bir_Yir: Plasmodium variant antigen protein Cir/Yir/Bir; InterPro: IPR006477 This group of sequences identifies a large paralogous family of variant antigens from several Plasmodium species (Plasmodium yoelii, Plasmodium berghei and Plasmodium chabaudi). It is not believed that there are any orthologs of this family in Plasmodium falciparum.
Probab=33.89 E-value=40 Score=34.10 Aligned_cols=28 Identities=29% Similarity=0.820 Sum_probs=23.7
Q ss_pred hhhHHHHHHHhhccC----------chHHHHHHHHHhh
Q 012648 223 HASFVWLFQQVFSHT----------PTLMVYVMILLAN 250 (459)
Q Consensus 223 haSFVWLFQqVFS~T----------PtLMVsVMILLAN 250 (459)
.|-|.|||.|.|..- +.+..|+||-|..
T Consensus 52 nA~~i~Ll~~~f~~~~~~~~~~~~n~~~~eYiilWLsy 89 (280)
T PF06022_consen 52 NAGFIWLLNQLFKNSDSFENSEKNNINIVEYIILWLSY 89 (280)
T ss_pred HHHHHHHHHHHhccCcccccccccchhHHHHHHHHHHH
Confidence 688999999999853 3589999999975
No 100
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=33.35 E-value=35 Score=22.51 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=17.9
Q ss_pred HhHhHHHHHHHHHhhhHHHhhccc
Q 012648 435 LLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 435 LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
..+.|.|..+.. ++++++|++||
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~ 25 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELL 25 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHH
Confidence 357788888877 59999999987
No 101
>PRK14574 hmsH outer membrane protein; Provisional
Probab=32.15 E-value=45 Score=38.27 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=31.3
Q ss_pred cchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 412 d~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
+-.+|+++.+.|+++++.+|+|+-+|.--|....+ .+..+.|.+++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~-~~q~~eAl~~l 159 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD-AGRGGVVLKQA 159 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh-cCCHHHHHHHH
Confidence 34567799999999999999998877533333333 35555665543
No 102
>PF11155 DUF2935: Domain of unknown function (DUF2935); InterPro: IPR021328 This family of proteins with unknown function appears to be restricted to Firmicutes. ; PDB: 3D19_B 3DBY_P.
Probab=30.67 E-value=1e+02 Score=26.69 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCHHHHhhhcccccccc--CcccchhhhhHHHHHHHhhhcCCCC
Q 012648 369 EEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANI--EADDYADYFRTELLYQTGLAQEPND 433 (459)
Q Consensus 369 eeE~~lWnsmveEAs~MQ~~~e~lD~et~~~lVAPV~a~l--E~dd~~~~~rtE~~Yk~~I~~dP~N 433 (459)
-||..+|.+++.|=+ ..++..+.|.+.++ ++++|.. .-+.++.+++...++.
T Consensus 6 lee~~FWl~im~eHa-----------~fi~~~L~p~e~~~i~~a~~f~~--~F~~ll~~a~~~~~~~ 59 (124)
T PF11155_consen 6 LEEHLFWLRIMKEHA-----------IFIRAGLDPKEKELIQEADEFKQ--QFDKLLKKARSLSNGL 59 (124)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHB-TT-HHHHHHHHHHHH--HHHHHHHHHHHCHHTC
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHhCCchhHHHHHHHHHHHH--HHHHHHHHHHHhcccc
Confidence 378889999998722 45666666666433 2233333 3567888888775555
No 103
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.31 E-value=62 Score=27.15 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcc
Q 012648 421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNF 457 (459)
Q Consensus 421 ~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeY 457 (459)
.-.++.|++||+|.-..-..|.- +...+|++.|.+-
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~-~~~~g~~e~Al~~ 44 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADA-LLAAGDYEEALDQ 44 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHH-HHHTT-HHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH-HHHCCCHHHHHHH
Confidence 34678899999999888888884 4678888888653
No 104
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=29.70 E-value=33 Score=23.60 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=15.2
Q ss_pred chhhhhHHHHHHH--hhhcCCCC
Q 012648 413 YADYFRTELLYQT--GLAQEPND 433 (459)
Q Consensus 413 ~~~~~rtE~~Yk~--~I~~dP~N 433 (459)
-.+|+++..+|++ .|..+|+|
T Consensus 12 ~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp CT-HHHHHHHHHHHHHHHHHCT-
T ss_pred cCCHHHHHHHHHHHHHhcccccC
Confidence 4678999999999 55667765
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=51 Score=36.63 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHhhccccccCCCHHHHhhhccccccccCcccchhhhhHHHHHHHhhhcCCCChHhHhHHH
Q 012648 378 IVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYA 441 (459)
Q Consensus 378 mveEAs~MQ~~~e~lD~et~~~lVAPV~a~lE~dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYA 441 (459)
.+|++.+.+++..-++++.-+..=.- -.+.=-+.+|..+-.+|-+||..||+|+-+++|=|
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~k---Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREK---GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHH---HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 34444444444445555543211110 22334467888899999999999999999998855
No 106
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.27 E-value=71 Score=32.89 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHh
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA 448 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~ 448 (459)
.+++.+..-|.+++..+|+||-++.=||.=||--.
T Consensus 170 ~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 170 GRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 46777889999999999999999999999887543
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.94 E-value=83 Score=27.15 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=31.7
Q ss_pred chhhhhHHHHHHHhhhcCCCCh---HhHhHHHHHHHHHhhhHHHhhccc
Q 012648 413 YADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 413 ~~~~~rtE~~Yk~~I~~dP~N~---LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
-.+++.+...|+++++..|++. +..-+.|+.+ .-.+++|.|...+
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~-~~~~~~d~Al~~L 108 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARIL-LQQGQYDEALATL 108 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 3677888999999999887763 3444456555 4578888887653
No 108
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=27.44 E-value=45 Score=36.75 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHhhccCch--HHHHHHHHHhh
Q 012648 222 MHASFVWLFQQVFSHTPT--LMVYVMILLAN 250 (459)
Q Consensus 222 MhaSFVWLFQqVFS~TPt--LMVsVMILLAN 250 (459)
-|.-++||+|+||+.+-+ +.+|-|+|+-=
T Consensus 264 ~~~PlLWL~qfif~~~~Rl~ili~W~lllvl 294 (510)
T KOG2468|consen 264 RHLPLLWLVQFIFSSLTRLKILIYWSLLLVL 294 (510)
T ss_pred ccCcHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356899999999999876 55666666543
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.36 E-value=72 Score=31.59 Aligned_cols=43 Identities=9% Similarity=-0.036 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHhhhcCCCCh---HhHhHHHHHHHHHhhhHHHhhccc
Q 012648 415 DYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 415 ~~~rtE~~Yk~~I~~dP~N~---LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
+|+.+-..|++.|...|+++ ..+--.|+.+ ...+|++.|.++|
T Consensus 158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y-~~~g~~~~A~~~f 203 (263)
T PRK10803 158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLN-YNKGKKDDAAYYF 203 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 44555566667777777663 2333334433 3366666666665
No 110
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=25.30 E-value=37 Score=26.50 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+|.++-.++++ +..+|.|+-..--+|+=+++ .++++.|.++|
T Consensus 39 ~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l 81 (84)
T PF12895_consen 39 GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAIKAL 81 (84)
T ss_dssp THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 467888888988 88999998887788887766 57799998876
No 111
>PLN02789 farnesyltranstransferase
Probab=24.78 E-value=83 Score=31.95 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=23.0
Q ss_pred hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhh-HHHhhccc
Q 012648 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD-YDRYLNFL 458 (459)
Q Consensus 417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D-~drAEeYy 458 (459)
...-.+|.++|..||+|.-+..+=+..+.....+ ++++.+|+
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 4445566777777777777655544444444332 24444443
No 112
>TIGR01590 yir-bir-cir_Pla yir/bir/cir-family of variant antigens, Plasmodium-specific. The model only hits genes previously characterized as yir, bir, or cir genes above the trusted cutoff. In between trusted and noise is one gene from P. vivax (vir25) which has been characterized as a distant relative of the yir/bir/cir family. The vir family appears to be present in 600-1000 copies per haploid genome and is preferentially located in the sub-telomeric regions of the chromosomes. The genomic data for yoelii is consistent with this observation. It is not believed that there are any orthologs of this family in P. falciparum.
Probab=24.76 E-value=71 Score=30.88 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHhhcc----------CchHHHHHHHHHhh
Q 012648 222 MHASFVWLFQQVFSH----------TPTLMVYVMILLAN 250 (459)
Q Consensus 222 MhaSFVWLFQqVFS~----------TPtLMVsVMILLAN 250 (459)
+.|-|.|||.|.|.. ...+.-|+||-|..
T Consensus 35 InA~~l~Ll~~f~~~~~~~~~~~~~n~~~veYiilWLsy 73 (199)
T TIGR01590 35 INAGCLWLLNQLYGISKDFKYKNNNNKAFIEYIIIWLSY 73 (199)
T ss_pred HHHHHHHHHHHHcCcccccccccccchhHHHHHHHHHHH
Confidence 368899999999943 23577899999984
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.00 E-value=1.1e+02 Score=26.39 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=5.7
Q ss_pred hhhHHHhhccc
Q 012648 448 AHDYDRYLNFL 458 (459)
Q Consensus 448 ~~D~drAEeYy 458 (459)
.+|++.|...|
T Consensus 131 ~g~~~~A~~~y 141 (145)
T PF09976_consen 131 QGDYDEARAAY 141 (145)
T ss_pred CCCHHHHHHHH
Confidence 45555555544
No 114
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=23.43 E-value=80 Score=34.48 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=47.4
Q ss_pred HHHHHHHHhhccc--------cccCCCHHHHhhhccccccccCcccchhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHH
Q 012648 375 WNSIVDEASQMQV--------TDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI 446 (459)
Q Consensus 375 WnsmveEAs~MQ~--------~~e~lD~et~~~lVAPV~a~lE~dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~ 446 (459)
.|++++|+-+-+. ....+|.-.....-|=+-.++. .++.++..|+..|..||.|-..+..|.+.|..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----RKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 4566666655444 2446776555544444444433 57789999999999999999999999998843
Q ss_pred H
Q 012648 447 V 447 (459)
Q Consensus 447 V 447 (459)
.
T Consensus 85 ~ 85 (517)
T PF12569_consen 85 Q 85 (517)
T ss_pred h
Confidence 3
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=23.22 E-value=76 Score=37.69 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 416 ~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
++.++..+...+...|+|-|.|===|.|+|. |+||-.|-.||+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~yn-kkdY~~al~yyk 188 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYN-KKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 7889999999999999999999999999998 999999999995
No 116
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=23.00 E-value=95 Score=30.03 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHhhhcCCCChHhHhHHHHHHHHH
Q 012648 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV 447 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V 447 (459)
.+|..+..+|++.|..+|+||-. -||.|+.-+
T Consensus 83 ~~y~~A~~~~e~fi~~~P~~~~~--~~a~Y~~g~ 114 (243)
T PRK10866 83 ADLPLAQAAIDRFIRLNPTHPNI--DYVLYMRGL 114 (243)
T ss_pred CCHHHHHHHHHHHHHhCcCCCch--HHHHHHHHH
Confidence 34666777777777777777744 666666443
No 117
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.93 E-value=79 Score=19.99 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHhhhcCCCC
Q 012648 414 ADYFRTELLYQTGLAQEPND 433 (459)
Q Consensus 414 ~~~~rtE~~Yk~~I~~dP~N 433 (459)
.+++.+..+|++.|+..|++
T Consensus 14 g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTTS
T ss_pred cCHHHHHHHHHHHHHHCcCC
Confidence 46788999999999999974
No 118
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=22.77 E-value=76 Score=25.51 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=16.1
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhHHHHHHH
Q 012648 189 VFIIRELHSFTLQMREILFYEDLQGILVR 217 (459)
Q Consensus 189 VfIIrELqsfaLqMRe~l~~eDLq~VL~r 217 (459)
=.||||||+--|-.-++. ..+|.|
T Consensus 26 ~vIirELqrTnLdVN~Av-----NNlLsR 49 (53)
T PF11547_consen 26 NVIIRELQRTNLDVNLAV-----NNLLSR 49 (53)
T ss_dssp HHHHHHHHHTTT-HHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccHHHHH-----HHHhcc
Confidence 379999999888665543 555554
No 119
>PLN02789 farnesyltranstransferase
Probab=22.75 E-value=1.1e+02 Score=30.97 Aligned_cols=41 Identities=5% Similarity=0.058 Sum_probs=28.5
Q ss_pred hhHHHHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 417 ~rtE~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
.+.-.++++||+.||+|--...+=+ ++..--+++++|.+||
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~-w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQ-WVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence 3456678888888888877765544 4444456788887776
No 120
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.91 E-value=1.1e+02 Score=25.67 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=36.5
Q ss_pred cCcccchhhhhHHHHHHHhhh-----cCCC-ChHhHhHHHHHHHHHhhhHHHhhcc
Q 012648 408 IEADDYADYFRTELLYQTGLA-----QEPN-DPLLLANYAQFLYIVAHDYDRYLNF 457 (459)
Q Consensus 408 lE~dd~~~~~rtE~~Yk~~I~-----~dP~-N~LlL~NYAqFL~~V~~D~drAEeY 457 (459)
++.|+-..|+.+-.+|..+|+ .||. +..++..|.+|- +.-++|||+.
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~a---~~yl~RAE~L 66 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQLA---RQALDRAEAL 66 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHH---HHHHHHHHHH
Confidence 577888899999999998876 3664 667888888776 4667888864
No 121
>PHA02265 hypothetical protein
Probab=21.39 E-value=1.3e+02 Score=26.76 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=23.7
Q ss_pred cccCcccchhhhhHHHHHHHhhhcCCCChHhHhHHHHH
Q 012648 406 ANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQF 443 (459)
Q Consensus 406 a~lE~dd~~~~~rtE~~Yk~~I~~dP~N~LlL~NYAqF 443 (459)
-+|-+.||.+||...+||- .+|+||-+.
T Consensus 60 ~eilti~y~~~ds~q~yy~----------yllrn~~ki 87 (103)
T PHA02265 60 QEILTIDYEYYDSLQEYYI----------YLLRNSEKI 87 (103)
T ss_pred CeeEEeeHHHHhHHHHHHH----------HHHHhHHHH
Confidence 3677899999999999995 578999764
No 122
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=93 Score=33.49 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHHHHhhhcCCCChHhHhHHHHHHHHHhhhHHHhhccc
Q 012648 421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRYLNFL 458 (459)
Q Consensus 421 ~~Yk~~I~~dP~N~LlL~NYAqFL~~V~~D~drAEeYy 458 (459)
++.++--.--|.---.|-.||+|.|+ .|.|-+|-+|.
T Consensus 116 ~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yL 152 (432)
T KOG2758|consen 116 QHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYL 152 (432)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHH
Confidence 33444444456666778899999999 78898888773
No 123
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.02 E-value=73 Score=28.80 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHHHHHhhhcCC--CChHhHhHHHHHHHHHhhhHHHhhcccC
Q 012648 419 TELLYQTGLAQEP--NDPLLLANYAQFLYIVAHDYDRYLNFLS 459 (459)
Q Consensus 419 tE~~Yk~~I~~dP--~N~LlL~NYAqFL~~V~~D~drAEeYyk 459 (459)
..+.|+.|..-.= +-+++.--||++| +.++++.+|++.|.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~l-E~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLL-EAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 4556776666543 5789999999999 77999999999874
Done!