BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012649
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 28/275 (10%)
Query: 120 YTPIKRPDGGGTLAIRTVNIFVNHFPVNFTPESTIRHYDIDVKPDIGPNHGRPVKLSKTV 179
+ P RPD G + RT+ + N F ++ P+ I HY++D+KP+ P ++++ +
Sbjct: 23 FKPPPRPDFG--TSGRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPR-----RVNREI 74
Query: 180 LA-IVRNKLCEDYPDQFPLSMTAYDGEKNIFSAIELPTGKFNVEFP-----EGEDMKYRT 233
+ +V++ + + D+ P+ +DG KN+++A+ LP G+ VE EG+D R
Sbjct: 75 VEHMVQHFKTQIFGDRKPV----FDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD---RI 127
Query: 234 YVFTIKLVNELKLCKLKEYLTGSLFSIPRDILQGMDVVMKENPSRRMISVGRSFHPVEPF 293
+ +IK V+ + L L + L+G L S+P + +Q +DVVM+ PS R VGRSF
Sbjct: 128 FKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEG 187
Query: 294 PDDDLGYGLTASRGFQHGLKATSQGLALCLDYSVLAFRKRLPVIDFLQEHINF-----DV 348
+ LG G GF ++ + + L +D S AF K PVI+F+ E ++F
Sbjct: 188 CSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQ 247
Query: 349 NGFRDWRKVE--NALKGLKHGFTSDQLQKLIYNMC 381
D ++V+ +KGLK T K Y +C
Sbjct: 248 KPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVC 282
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 368 FTSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYH 411
F+SD+LQ L Y +C T+ RCT+ VS+ P YYA LVA+R R YH
Sbjct: 774 FSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRAR-YH 816
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 28/275 (10%)
Query: 120 YTPIKRPDGGGTLAIRTVNIFVNHFPVNFTPESTIRHYDIDVKPDIGPNHGRPVKLSKTV 179
+ P RPD G + RT+ + N F ++ P+ I HY++D+KP+ P ++++ +
Sbjct: 25 FKPPPRPDFG--TSGRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPR-----RVNREI 76
Query: 180 LA-IVRNKLCEDYPDQFPLSMTAYDGEKNIFSAIELPTGKFNVEFP-----EGEDMKYRT 233
+ +V++ + + D+ P+ +DG KN+++A+ LP G+ VE EG+D R
Sbjct: 77 VEHMVQHFKTQIFGDRKPV----FDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD---RI 129
Query: 234 YVFTIKLVNELKLCKLKEYLTGSLFSIPRDILQGMDVVMKENPSRRMISVGRSFHPVEPF 293
+ +IK V+ + L L + L+G L S+P + +Q +DVVM+ PS R VGRSF
Sbjct: 130 FKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEG 189
Query: 294 PDDDLGYGLTASRGFQHGLKATSQGLALCLDYSVLAFRKRLPVIDFLQEHINF-----DV 348
+ LG G GF ++ + + L +D S AF K PVI+F+ E ++F
Sbjct: 190 CSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQ 249
Query: 349 NGFRDWRKVE--NALKGLKHGFTSDQLQKLIYNMC 381
D ++V+ +KGLK T K Y +C
Sbjct: 250 KPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVC 284
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 368 FTSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYH 411
F+SD+LQ L Y +C T+ RCT+ VS+ P YYA LVA+R R YH
Sbjct: 776 FSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRAR-YH 818
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 369 TSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVMEG 417
+D L++L ++MC+ F R TK VS+ PP YYADLV R R++ + + +
Sbjct: 357 AADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDA 405
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 369 TSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVMEG 417
+D L++L ++MC+ F R TK VS+ PP YYADLV R R++ + + +
Sbjct: 308 AADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDA 356
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
Length = 1046
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 369 TSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVME 416
TSD LQ++ N+C+ F R T V + PVYYADL+ R + +A E
Sbjct: 961 TSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFE 1008
>pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis.
pdb|4E04|B Chain B, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis
Length = 327
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 143 HFPVNFTPESTIRHYDID--------------VKPDIGPNHGRPVKLSKTVL 180
HFP + P R Y I+ V PD+ P GRP+ LS +L
Sbjct: 198 HFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAIL 249
>pdb|1XXQ|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXR|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
Length = 161
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 157 YDIDVKPDIGPNHGRPVKLSKTVLAIVRNKLCEDYPDQFPLSMTAYDG 204
YD++ +P GP H KTV K+ D+P++F +S++ Y G
Sbjct: 56 YDLNGQPFTGPTHPGNEPSFKTV------KITLDFPNEFLVSVSGYTG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,901,593
Number of Sequences: 62578
Number of extensions: 439621
Number of successful extensions: 739
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 12
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)