Query 012649
Match_columns 459
No_of_seqs 288 out of 1109
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 2.2E-45 7.6E-50 410.8 21.3 282 121-416 26-331 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 1.9E-38 6.4E-43 356.6 15.9 290 120-414 17-443 (1046)
3 1u04_A Argonaute, hypothetical 99.8 3.8E-21 1.3E-25 210.9 2.0 212 136-416 3-247 (771)
4 1yvu_A Hypothetical protein AQ 99.5 1.5E-14 5.3E-19 158.3 5.2 143 174-342 29-175 (706)
5 4f3t_A Protein argonaute-2; hy 99.2 4E-12 1.4E-16 142.5 3.1 87 367-459 775-861 (861)
6 4f1n_A Kpago; argonaute, RNAI, 99.2 4.1E-12 1.4E-16 143.5 1.8 89 366-459 958-1046(1046)
7 2yha_A Post-transcriptional ge 99.2 3.1E-12 1.1E-16 131.4 0.7 83 367-459 306-388 (388)
8 2yhb_A QDE-2, post-transcripti 99.1 1.3E-11 4.6E-16 128.4 0.8 83 367-459 355-437 (437)
9 3mj0_A Protein argonaute-2; ar 97.8 3.7E-06 1.2E-10 72.5 1.5 80 333-415 2-98 (124)
10 3o7v_X PIWI-like protein 1; PI 97.8 2.9E-06 9.7E-11 73.2 -0.2 77 334-416 2-88 (124)
11 1vyn_A Argonaute2; nucleic aci 97.7 3.4E-06 1.2E-10 74.5 -0.4 82 331-415 2-100 (143)
12 2xfm_A MIWI, PIWI-like protein 97.7 3.9E-06 1.3E-10 74.7 -0.4 78 333-416 2-89 (150)
13 3qir_A PIWI-like protein 2; st 97.7 4.7E-06 1.6E-10 74.0 -0.1 77 333-416 2-88 (148)
14 3ho1_A Argonaute; argonaute, p 97.3 0.00088 3E-08 72.7 11.0 210 136-405 6-233 (685)
15 1r6z_P Chimera of maltose-bind 97.1 0.00011 3.8E-09 77.2 1.2 89 324-415 375-480 (509)
16 1yvu_A Hypothetical protein AQ 96.7 0.00052 1.8E-08 75.2 2.1 44 369-412 651-694 (706)
17 3ho1_A Argonaute; argonaute, p 96.0 0.0026 8.9E-08 69.1 3.0 40 366-405 624-664 (685)
18 1u04_A Argonaute, hypothetical 95.4 0.005 1.7E-07 67.9 2.2 43 370-412 714-757 (771)
19 2w42_A PIWI, putative uncharac 94.1 0.021 7E-07 59.0 2.8 43 370-412 364-406 (427)
20 2qvw_A GLP_546_48378_50642; di 69.5 0.32 1.1E-05 53.7 -3.8 56 356-416 151-216 (756)
21 1oei_A Major prion protein; oc 54.8 11 0.00036 22.5 2.6 9 20-28 4-12 (26)
22 3u85_B Histone-lysine N-methyl 39.7 14 0.00048 20.9 1.4 7 13-19 9-15 (21)
23 2p4r_T E3 ubiquitin-protein li 31.4 25 0.00084 21.3 1.7 14 73-86 6-19 (26)
24 2h8h_A Proto-oncogene tyrosine 24.5 14 0.00049 38.3 -0.4 10 391-400 428-437 (535)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=2.2e-45 Score=410.85 Aligned_cols=282 Identities=30% Similarity=0.471 Sum_probs=220.6
Q ss_pred cccCCCCCCCCCcceeEEEEeeEEEeeecCCceeEEeEEEEecCCCCCCCCcccccHHHHHHHHHHHHhhC-CCCCCCCc
Q 012649 121 TPIKRPDGGGTLAIRTVNIFVNHFPVNFTPESTIRHYDIDVKPDIGPNHGRPVKLSKTVLAIVRNKLCEDY-PDQFPLSM 199 (459)
Q Consensus 121 ~p~~RP~~Gt~~~G~~V~L~tN~F~l~~~p~~~iy~YdV~i~p~~~~k~g~~~kl~r~i~~~i~~~Ll~~~-~~~f~~~~ 199 (459)
.+++|||+||. |++|.|+||||+|++ +++.||||||+|+|+..++ +++|+ |+++|++++ .+.|++..
T Consensus 26 ~~p~RPg~Gt~--G~~i~l~aN~F~v~~-~~~~ly~Y~V~i~p~~~~~-----~~~r~----i~~~l~~~~~~~~~~~~~ 93 (861)
T 4f3t_A 26 KPPPRPDFGTS--GRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPR-----RVNRE----IVEHMVQHFKTQIFGDRK 93 (861)
T ss_dssp CCCBCCCCCCC--SEEEEEEESEEEEEC-CSCEEEEEEEEEESCSCCH-----HHHHH----HHHHHHHHSCCCCCTTCC
T ss_pred cCCCCCCCCCC--CcEEEEEeeeEEEEC-CCCceeeeeEEeCCCcCcH-----HHHHH----HHHHHHHHhhhhhhcCce
Confidence 45589999998 999999999999998 6789999999999987654 55555 444555554 34576556
Q ss_pred eEEcCCceEEeCccCCCc--eeEEEeccCCCCceeEEEEEEEEeeeechHHHHHHhcCCCCCCChhhHHHHHHHHhcCCC
Q 012649 200 TAYDGEKNIFSAIELPTG--KFNVEFPEGEDMKYRTYVFTIKLVNELKLCKLKEYLTGSLFSIPRDILQGMDVVMKENPS 277 (459)
Q Consensus 200 ~ayDG~~~LyS~~~Lp~~--~~~V~l~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~LnIIlr~~~~ 277 (459)
+||||+++|||+.+|+.+ .+++.+....+.+.+.|+|+|+++++|++++|.+||.|.....+.++||+||||||+.++
T Consensus 94 ~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~ 173 (861)
T 4f3t_A 94 PVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPS 173 (861)
T ss_dssp CEECSSSEEEESSCCSCSSCEEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCcceEEECCcCCCCCcceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhcc
Confidence 799999999999999853 233333222233567899999999999999999999998888889999999999999777
Q ss_pred CcceecccccccCCCCCCCCCCCceEEeecceeeeeecccceEEEeeeeeceeecCccHHHHHHHHhccCCC-------C
Q 012649 278 RRMISVGRSFHPVEPFPDDDLGYGLTASRGFQHGLKATSQGLALCLDYSVLAFRKRLPVIDFLQEHINFDVN-------G 350 (459)
Q Consensus 278 ~~~~~vGRsfF~~~~~~~~~l~~GlE~w~Gf~~SVR~~~ggL~LNvDvs~~~F~~~~~lld~i~e~~~~~~~-------~ 350 (459)
+++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|++|++|+++++|+|+|.++++.... .
T Consensus 174 ~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~ 253 (861)
T 4f3t_A 174 MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253 (861)
T ss_dssp HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCC
T ss_pred ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccC
Confidence 889999999999875444677899999999999999999999999999999999999999999999865321 1
Q ss_pred CccHHHHHHHHhccccccccchhhhhhhcc-------cc--ccc---CCC--cceecchhhhhHHHHHHHhhhhhhhhhc
Q 012649 351 FRDWRKVENALKGLKHGFTSDQLQKLIYNM-------CF--TFA---RCT--KPVSLVPPVYYADLVAYRGRLYHEAVME 416 (459)
Q Consensus 351 ~~~~~~l~k~LkGl~v~~t~d~~~~lt~~l-------~~--~f~---r~t--~~vSv~~p~Yya~~y~~r~r~~~~~~~~ 416 (459)
..++.+++++|+|++|.++|...++.+|++ +. +|. ..+ +.|||+ +||+++|++++++..++...
T Consensus 254 ~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~--dYFk~kYni~L~~p~lPll~ 331 (861)
T 4f3t_A 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVA--QYFKDRHKLVLRYPHLPCLQ 331 (861)
T ss_dssp HHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHH--HHHHHHHCCCCSCTTSEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHH--HHHHHhcCcccCCCCCceEE
Confidence 234679999999999988874323344532 11 253 223 379999 99999999999987777543
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=1.9e-38 Score=356.63 Aligned_cols=290 Identities=18% Similarity=0.198 Sum_probs=205.7
Q ss_pred ccccCCCCCCCCCcceeEEEEeeEEEeeecCC--------------------ceeEEeEEEEecCCCC--CCC---Cccc
Q 012649 120 YTPIKRPDGGGTLAIRTVNIFVNHFPVNFTPE--------------------STIRHYDIDVKPDIGP--NHG---RPVK 174 (459)
Q Consensus 120 ~~p~~RP~~Gt~~~G~~V~L~tN~F~l~~~p~--------------------~~iy~YdV~i~p~~~~--k~g---~~~k 174 (459)
..++.||||||. |++|.||||||.|.+..+ ..||+|+|+|.|+... +++ .+.+
T Consensus 17 ~~~p~Rp~yGt~--G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~ 94 (1046)
T 4f1n_A 17 YKVENRHDYGTK--GTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQE 94 (1046)
T ss_dssp CCCCBCCCCCCC--SEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------
T ss_pred ccCCCCCCCCCC--CcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCcccc
Confidence 445589999998 999999999999999654 3899999999986432 111 1235
Q ss_pred ccHHHHHHHHHHHHhhC--CCCCCCCceEEcCCceEEeCccCC-----CceeEEEec-----cCC---------------
Q 012649 175 LSKTVLAIVRNKLCEDY--PDQFPLSMTAYDGEKNIFSAIELP-----TGKFNVEFP-----EGE--------------- 227 (459)
Q Consensus 175 l~r~i~~~i~~~Ll~~~--~~~f~~~~~ayDG~~~LyS~~~Lp-----~~~~~V~l~-----~~~--------------- 227 (459)
+.++...+|++.||++. ...| +..+||||+++|||..+|+ ++.+.|... +..
T Consensus 95 ~~~~k~~~ii~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1046)
T 4f1n_A 95 LSKPKKYELIEALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKID 173 (1046)
T ss_dssp CCHHHHHHHHHHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC---------------------------
T ss_pred cchhHHHHHHHHHHHhcchhhhc-CCceeecCccceEECCcCCccccCCCceEEeccccccccCCccccccccccccccc
Confidence 55556667888888762 2335 4569999999999999998 456666654 111
Q ss_pred -CCceeEEEEEEEEeeeechHHHHHHhcCCCCCC-----ChhhHHHHHHHHhcCCCCc---ceecccc-cccCCC-CCCC
Q 012649 228 -DMKYRTYVFTIKLVNELKLCKLKEYLTGSLFSI-----PRDILQGMDVVMKENPSRR---MISVGRS-FHPVEP-FPDD 296 (459)
Q Consensus 228 -~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~-----~~~~iq~LnIIlr~~~~~~---~~~vGRs-fF~~~~-~~~~ 296 (459)
..++..|+|+|+++++|++++|.+||.+..... +.+.+++||+||++.+..+ ..++|++ ||..+. ....
T Consensus 174 ~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~~~~~ 253 (1046)
T 4f1n_A 174 PELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAI 253 (1046)
T ss_dssp ----CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTTCCEE
T ss_pred ccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCCCccc
Confidence 135567999999999999999999999986432 2678999999999988633 3667765 886654 2357
Q ss_pred CCCCceEEeecceeeeeecccceEEEeeeeeceeecC-----------------ccHHHHHHHHhccC------------
Q 012649 297 DLGYGLTASRGFQHGLKATSQGLALCLDYSVLAFRKR-----------------LPVIDFLQEHINFD------------ 347 (459)
Q Consensus 297 ~l~~GlE~w~Gf~~SVR~~~ggL~LNvDvs~~~F~~~-----------------~~lld~i~e~~~~~------------ 347 (459)
+|++|+|+|+|||+|||+++++|+||||++|++|++. ++|+|+|.++++..
T Consensus 254 ~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~~~~~ 333 (1046)
T 4f1n_A 254 PFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYNPKT 333 (1046)
T ss_dssp ECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSCTTTT
T ss_pred cCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccccccccccc
Confidence 8999999999999999999999999999999999985 69999999987621
Q ss_pred --CCCCccH-------HHHHHHHhccccccccch-------------------hhhhhhcc--cccccCC----------
Q 012649 348 --VNGFRDW-------RKVENALKGLKHGFTSDQ-------------------LQKLIYNM--CFTFARC---------- 387 (459)
Q Consensus 348 --~~~~~~~-------~~l~k~LkGl~v~~t~d~-------------------~~~lt~~l--~~~f~r~---------- 387 (459)
.....++ .+++++|||++|..+|.. |..++-.- ..+|...
T Consensus 334 ~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~~~~ 413 (1046)
T 4f1n_A 334 APPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKNSAP 413 (1046)
T ss_dssp SCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC--------------
T ss_pred cCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccccccc
Confidence 1112355 789999999999988832 01111110 1224321
Q ss_pred -----CcceecchhhhhHHHHHHHhhhhhhhh
Q 012649 388 -----TKPVSLVPPVYYADLVAYRGRLYHEAV 414 (459)
Q Consensus 388 -----t~~vSv~~p~Yya~~y~~r~r~~~~~~ 414 (459)
++.|||. +||+++|+++++....+.
T Consensus 414 ~~g~~~~~iTVa--dYFk~kYni~LkyP~LPc 443 (1046)
T 4f1n_A 414 KPNEKPININTI--DYFKRKYDITLKYPDMKL 443 (1046)
T ss_dssp ---------CHH--HHHHHHSCCCCSCTTSCC
T ss_pred cCCcCceEEEHH--HHHHHHhCcccCCCCCCE
Confidence 2579999 999999999999655543
No 3
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=99.80 E-value=3.8e-21 Score=210.91 Aligned_cols=212 Identities=9% Similarity=-0.029 Sum_probs=142.3
Q ss_pred eEEEEeeEEEeee--cCCceeEEeEEEEecCCCCCCCCcccccHHHHHHHHHHHHhhCCCCCCCCceEEcCCce--EEeC
Q 012649 136 TVNIFVNHFPVNF--TPESTIRHYDIDVKPDIGPNHGRPVKLSKTVLAIVRNKLCEDYPDQFPLSMTAYDGEKN--IFSA 211 (459)
Q Consensus 136 ~V~L~tN~F~l~~--~p~~~iy~YdV~i~p~~~~k~g~~~kl~r~i~~~i~~~Ll~~~~~~f~~~~~ayDG~~~--LyS~ 211 (459)
++.|.+|||+|.. .|+ .||||+|+|+|+++.+ .|. .++.+|.+.+ | .++|||. . ||++
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-------~~~-------~~~~~~~~~~-g-~~~fdg~-~~~l~~~ 64 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-------KEG-------YSIYRLAYEN-V-GIVIDPE-NLIIATT 64 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC--------------------------CCHHHHHHHT-T-EEEEETT-TTEEEES
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-------HHH-------HHHHHHHhhc-C-cEEecCc-ceeeecc
Confidence 6899999999988 677 9999999999998753 111 1122222234 4 8899996 5 9999
Q ss_pred ccCCCceeEEEeccCCCCceeEEEEEEEEeeeechHHHHHHhcCCCCCCChhhHHHHHHHHhcCCC-Cc-----ceeccc
Q 012649 212 IELPTGKFNVEFPEGEDMKYRTYVFTIKLVNELKLCKLKEYLTGSLFSIPRDILQGMDVVMKENPS-RR-----MISVGR 285 (459)
Q Consensus 212 ~~Lp~~~~~V~l~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~LnIIlr~~~~-~~-----~~~vGR 285 (459)
++|+. ++..+.|+|+.+++++ +|++|+|+|+.++ ++ +..+||
T Consensus 65 ~~l~~-------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r 112 (771)
T 1u04_A 65 KELEY-------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLR 112 (771)
T ss_dssp SCCCC-------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHT
T ss_pred ceecc-------------CCCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccchHHHHHHhh
Confidence 99871 2445778887777653 7899999999998 56 889999
Q ss_pred ccccCCCCCCCCCCCceEEeecceeeeeecccceEEEeeeeeceeecCccHHHHHHHHhccCCCCCccHHHHHHHHhccc
Q 012649 286 SFHPVEPFPDDDLGYGLTASRGFQHGLKATSQGLALCLDYSVLAFRKRLPVIDFLQEHINFDVNGFRDWRKVENALKGLK 365 (459)
Q Consensus 286 sfF~~~~~~~~~l~~GlE~w~Gf~~SVR~~~ggL~LNvDvs~~~F~~~~~lld~i~e~~~~~~~~~~~~~~l~k~LkGl~ 365 (459)
+||++. . -..+++|+||.+||+++|++++||+|++|++++. +||+|+|.++.+ ..+.+...+.|..
T Consensus 113 ~~~~~~-----~-~~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r~-~t~~d~~~~~~~-------~~~~~~~~~~g~~ 178 (771)
T 1u04_A 113 KFRKPK-----T-FGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQSM-KTLWELVNKDPK-------ELEEFLMTHKENL 178 (771)
T ss_dssp TTSCCE-----E-ETTEEEEEEEEEEEEECSSCEEEEEEEEEEEEES-SCHHHHTTTCHH-------HHHHHHHHSTTTC
T ss_pred hcCCCc-----c-ccccEEEECceeeEEecCCceEEEEEeeeeEeeh-hHHHHHHHHHHH-------HHHHHHHhccCcE
Confidence 999873 1 2357888889999999999999999999999995 799999877642 3456666667764
Q ss_pred cccc--------cchhhhhhhcc---------c--cc--ccCCC--cceecchhhhhHHHHHHHhhhhhhhhhc
Q 012649 366 HGFT--------SDQLQKLIYNM---------C--FT--FARCT--KPVSLVPPVYYADLVAYRGRLYHEAVME 416 (459)
Q Consensus 366 v~~t--------~d~~~~lt~~l---------~--~~--f~r~t--~~vSv~~p~Yya~~y~~r~r~~~~~~~~ 416 (459)
|... |. +++.+|+. + ++ |...+ ..+++. +||..+|++ +|..|+.+-
T Consensus 179 ~~~~~~~~~~~vy~-~n~~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~y~i--~d~~QPllv 247 (771)
T 1u04_A 179 MLKDIASPLKTVYK-PCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPEAK--LEFYRKFGQ--VDLKQPAIL 247 (771)
T ss_dssp EEEETTSTTCCEEE-ECBCTTSSCBCEECCHHHHHHHHHHHHHHHCCSHHHH--HHHHHHHCS--CCTTSCEEE
T ss_pred EeeeccccceeEee-cccceeecCCccccCCCChhheeceeecCCCCCcchh--HHHHHhcCc--CcCCCCeEE
Confidence 2111 10 01122221 1 22 34332 345666 777788884 888888644
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=99.47 E-value=1.5e-14 Score=158.27 Aligned_cols=143 Identities=10% Similarity=0.109 Sum_probs=105.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCCCceEEcCCceEEeCccCCCceeEEEeccCCCCceeEEEEEEEEeeeechHHHHHHh
Q 012649 174 KLSKTVLAIVRNKLCEDYPDQFPLSMTAYDGEKNIFSAIELPTGKFNVEFPEGEDMKYRTYVFTIKLVNELKLCKLKEYL 253 (459)
Q Consensus 174 kl~r~i~~~i~~~Ll~~~~~~f~~~~~ayDG~~~LyS~~~Lp~~~~~V~l~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l 253 (459)
++.++.+.+++-+.+-+. +...|....-.|...+....++.++..+ +. .|+|++++++..-
T Consensus 29 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~------ 89 (706)
T 1yvu_A 29 EIQKEKLNKVRWRVFLQT------GLPTFRREDEFWCAGKVEKDTLYLTLSN-----GE--IVELKRVGEEEFR------ 89 (706)
T ss_dssp CCCHHHHHHHHHHHHHHH------CSCEEEETTEEEESSCCTTCCCEEEECS-----SS--CEEEEECCCEECC------
T ss_pred HHHHHhhhheeeEeeeec------CCccccccccceeccccccceEEEEcCC-----CC--EEEEEEEEEeecc------
Confidence 445555665654443221 1235555567888888876655555432 22 5669999988721
Q ss_pred cCCCCCCChhhHHHHHHHHhcCCCCcceecccccccCCCCCCCCC---CCceEEeecceeeeeecc-cceEEEeeeeece
Q 012649 254 TGSLFSIPRDILQGMDVVMKENPSRRMISVGRSFHPVEPFPDDDL---GYGLTASRGFQHGLKATS-QGLALCLDYSVLA 329 (459)
Q Consensus 254 ~g~~~~~~~~~iq~LnIIlr~~~~~~~~~vGRsfF~~~~~~~~~l---~~GlE~w~Gf~~SVR~~~-ggL~LNvDvs~~~ 329 (459)
...++++++|+++++|++. .+++..|||+||++.. ++.| +++||+|+||.+||+.++ ++++||+|++|++
T Consensus 90 ---~~~~~~~~~~~~~~~~~~~-~l~~~~igr~~~~~~~--~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshKv 163 (706)
T 1yvu_A 90 ---GFQNERECQELFRDFLTKT-KVKDKFISDFYKKFRD--KITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFRI 163 (706)
T ss_dssp ---CCSCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH--HHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEEE
T ss_pred ---CCCCCHHHHHHHHHHHHHc-CChHhhhCccccCccc--cccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeeee
Confidence 0013689999999999988 5677799999999875 5666 578999999999999999 9999999999998
Q ss_pred eecCccHHHHHHH
Q 012649 330 FRKRLPVIDFLQE 342 (459)
Q Consensus 330 F~~~~~lld~i~e 342 (459)
++ ..||+|+|.+
T Consensus 164 lr-~~Tvld~l~~ 175 (706)
T 1yvu_A 164 QP-FETLQTLLER 175 (706)
T ss_dssp EE-SSCHHHHHHH
T ss_pred cc-cchHHHHHHH
Confidence 77 5799999998
No 5
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=99.19 E-value=4e-12 Score=142.46 Aligned_cols=87 Identities=37% Similarity=0.584 Sum_probs=60.9
Q ss_pred ccccchhhhhhhcccccccCCCcceecchhhhhHHHHHHHhhhhhhhhhcCCCCCCcccCCCCCCcCCCCCCchhhhhhh
Q 012649 367 GFTSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVMEGQSPASVSSSSSSLTSTSLSSDASFDERFY 446 (459)
Q Consensus 367 ~~t~d~~~~lt~~l~~~f~r~t~~vSv~~p~Yya~~y~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (459)
+++.|.+|.|||+|||+|.+++++||+++|.||||++|.|+|+|+...++..+. ++++++.+ ...+........
T Consensus 775 ~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~ 848 (861)
T 4f3t_A 775 RFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAE----GSHTSGQS--NGRDHQALAKAV 848 (861)
T ss_dssp CCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------------CCSTTHHHHT
T ss_pred CCCHHHHHHHHHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCc----cccccCCC--cccchhhhhhhh
Confidence 577788999999999999999999999999999999999999998764332211 11111111 111222233457
Q ss_pred hhhhhcccCceeC
Q 012649 447 KLHTDLENMMYFV 459 (459)
Q Consensus 447 ~vh~~~~~~M~~~ 459 (459)
.||++++++|||+
T Consensus 849 ~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 849 QVHQDTLRTMYFA 861 (861)
T ss_dssp CCCHHHHTTTTTC
T ss_pred hhhhhhccCceeC
Confidence 8999999999996
No 6
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=99.17 E-value=4.1e-12 Score=143.49 Aligned_cols=89 Identities=27% Similarity=0.493 Sum_probs=66.4
Q ss_pred cccccchhhhhhhcccccccCCCcceecchhhhhHHHHHHHhhhhhhhhhcCCCCCCcccCCCCCCcCCCCCCchhhhhh
Q 012649 366 HGFTSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVMEGQSPASVSSSSSSLTSTSLSSDASFDERF 445 (459)
Q Consensus 366 v~~t~d~~~~lt~~l~~~f~r~t~~vSv~~p~Yya~~y~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
++++.|++|+|||+|||+|.+|+++||+++|.||||++|.|+|+|+...++..+.+. + +++++.++ ........+
T Consensus 958 ~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~ 1032 (1046)
T 4f1n_A 958 NQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQA--P-KEKGSKDQ--PTVSKNVLL 1032 (1046)
T ss_dssp SCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC---------------CCCHHHHS
T ss_pred CCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhcccccc--c-cccCCccc--cccCccccc
Confidence 367889999999999999999999999999999999999999999998665321111 1 11111111 122334568
Q ss_pred hhhhhhcccCceeC
Q 012649 446 YKLHTDLENMMYFV 459 (459)
Q Consensus 446 ~~vh~~~~~~M~~~ 459 (459)
+.||++++++||||
T Consensus 1033 ~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1033 PQVNDNIKSVMYYI 1046 (1046)
T ss_dssp CCCCGGGTTSCTTC
T ss_pred chhhhhhccceeeC
Confidence 99999999999998
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=99.17 E-value=3.1e-12 Score=131.40 Aligned_cols=83 Identities=34% Similarity=0.605 Sum_probs=54.1
Q ss_pred ccccchhhhhhhcccccccCCCcceecchhhhhHHHHHHHhhhhhhhhhcCCCCCCcccCCCCCCcCCCCCCchhhhhhh
Q 012649 367 GFTSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVMEGQSPASVSSSSSSLTSTSLSSDASFDERFY 446 (459)
Q Consensus 367 ~~t~d~~~~lt~~l~~~f~r~t~~vSv~~p~Yya~~y~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (459)
+++.|.+|+|||+|||+|.+++++||+++|.||||++|.|+|+|+...++..+. +++++ +. .........
T Consensus 306 ~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~----~~~~~--~~----~~~~~~~~~ 375 (388)
T 2yha_A 306 NKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDE----NDSVK--TD----DFARWGNSG 375 (388)
T ss_dssp GGHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHCHHHHHHHTT----CSCCC--HH----HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhccCCCc----ccccC--CC----ccccccccc
Confidence 567888999999999999999999999999999999999999999876654211 11111 10 111223467
Q ss_pred hhhhhcccCceeC
Q 012649 447 KLHTDLENMMYFV 459 (459)
Q Consensus 447 ~vh~~~~~~M~~~ 459 (459)
.+|++|+++||||
T Consensus 376 ~~~~~l~~~mfyl 388 (388)
T 2yha_A 376 AVHPNLRNSMYYI 388 (388)
T ss_dssp CCCGGGTTSCTTC
T ss_pred ccCHHhcCCceeC
Confidence 8999999999997
No 8
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=99.08 E-value=1.3e-11 Score=128.43 Aligned_cols=83 Identities=35% Similarity=0.614 Sum_probs=54.2
Q ss_pred ccccchhhhhhhcccccccCCCcceecchhhhhHHHHHHHhhhhhhhhhcCCCCCCcccCCCCCCcCCCCCCchhhhhhh
Q 012649 367 GFTSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVMEGQSPASVSSSSSSLTSTSLSSDASFDERFY 446 (459)
Q Consensus 367 ~~t~d~~~~lt~~l~~~f~r~t~~vSv~~p~Yya~~y~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (459)
+++.|++|+|||+|||+|.+++++||+++|.||||++|.|+|+|+...++... ++++++ ++ .......+.
T Consensus 355 ~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~----~~~~~~-~~-----~~~~~~~~~ 424 (437)
T 2yhb_A 355 NKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALD----ENDSVK-TD-----DFARWGNSG 424 (437)
T ss_dssp GGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHCHHHHHHHH----HTSCCC-HH-----HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHHHHHHhhhhccCCC----CCCccC-CC-----Ccccccccc
Confidence 57889999999999999999999999999999999999999999987554321 111111 10 112223467
Q ss_pred hhhhhcccCceeC
Q 012649 447 KLHTDLENMMYFV 459 (459)
Q Consensus 447 ~vh~~~~~~M~~~ 459 (459)
.+|++|+++||||
T Consensus 425 ~~~~~l~~~mfyl 437 (437)
T 2yhb_A 425 AVHPNLRNSMYYI 437 (437)
T ss_dssp SCCGGGTTSCTTC
T ss_pred ccCHhhcCCceeC
Confidence 8999999999997
No 9
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=97.85 E-value=3.7e-06 Score=72.53 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=57.9
Q ss_pred CccHHHHHHHHhccC-C---CC-CccHHHHHHHHhccccccccch---hhhhhhcc---------cccccCCCcceecch
Q 012649 333 RLPVIDFLQEHINFD-V---NG-FRDWRKVENALKGLKHGFTSDQ---LQKLIYNM---------CFTFARCTKPVSLVP 395 (459)
Q Consensus 333 ~~~lld~i~e~~~~~-~---~~-~~~~~~l~k~LkGl~v~~t~d~---~~~lt~~l---------~~~f~r~t~~vSv~~ 395 (459)
+++|+|||++++... . +. ..++.+++++|+|++|.++|.. ..+.+|++ ..+|..+++.|||.
T Consensus 2 ~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~g~~isV~- 80 (124)
T 3mj0_A 2 SMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIA- 80 (124)
T ss_dssp EEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESSSSEEEHH-
T ss_pred CccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeCCcEEEHH-
Confidence 589999999987421 1 11 2457899999999999888731 12344432 23476667889999
Q ss_pred hhhhHHHHHHHhhhhhhhhh
Q 012649 396 PVYYADLVAYRGRLYHEAVM 415 (459)
Q Consensus 396 p~Yya~~y~~r~r~~~~~~~ 415 (459)
+||+++ +++++..+++..
T Consensus 81 -~Yf~~~-~~~l~~p~lP~l 98 (124)
T 3mj0_A 81 -SYFHSR-NYPLKFPQLHCL 98 (124)
T ss_dssp -HHHHTT-TCCCSCSSSEEE
T ss_pred -HHHHHc-CCcccCCCCCeE
Confidence 999998 999998766644
No 10
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=97.79 E-value=2.9e-06 Score=73.17 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=58.5
Q ss_pred ccHHHHHHHHhccCCCCCccHHHHHHHHhccccccccchhhhhhhc---------ccccccCC-CcceecchhhhhHHHH
Q 012649 334 LPVIDFLQEHINFDVNGFRDWRKVENALKGLKHGFTSDQLQKLIYN---------MCFTFARC-TKPVSLVPPVYYADLV 403 (459)
Q Consensus 334 ~~lld~i~e~~~~~~~~~~~~~~l~k~LkGl~v~~t~d~~~~lt~~---------l~~~f~r~-t~~vSv~~p~Yya~~y 403 (459)
+||+|+|.++.+... ....+++++++|+|+.|.++|. +.+|. ..++|... +..+||+ +||+++|
T Consensus 2 ~tvld~~~~~~~~~~-~~~~~~~~~k~l~G~~V~t~yn---nk~YrI~~I~~~~~p~s~F~~~dg~~~T~~--eYyk~kY 75 (124)
T 3o7v_X 2 ETVLDFMFNFYHQTE-EHKFQEQVSKELIGLVVLTKYN---NKTYRVDDIDWDQNPKSTFKKADGSEVSFL--EYYRKQY 75 (124)
T ss_dssp CBHHHHHHHSCCCSS-HHHHHHHHHHHHTTCEEEETTS---SCEEECCEEETTCCTTCEEECTTSCEEEHH--HHHHHHH
T ss_pred ccHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeeeCCCCCccCcccCCCCCeeeHH--HHHHHHh
Confidence 689999999864311 1234679999999999987773 34442 34568764 5679999 9999999
Q ss_pred HHHhhhhhhhhhc
Q 012649 404 AYRGRLYHEAVME 416 (459)
Q Consensus 404 ~~r~r~~~~~~~~ 416 (459)
+++|++..|+.+.
T Consensus 76 ~i~I~~~~QPLL~ 88 (124)
T 3o7v_X 76 NQEITDLKQPMLV 88 (124)
T ss_dssp CCCCCCSSCCEEE
T ss_pred CceecCCCcceEE
Confidence 9999998888755
No 11
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=97.75 E-value=3.4e-06 Score=74.52 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=57.7
Q ss_pred ecCccHHHHHHHHhcc-CCC--C--CccHHHHHHHHhccccccccch---hhhhhhcc---------cccccCCCcceec
Q 012649 331 RKRLPVIDFLQEHINF-DVN--G--FRDWRKVENALKGLKHGFTSDQ---LQKLIYNM---------CFTFARCTKPVSL 393 (459)
Q Consensus 331 ~~~~~lld~i~e~~~~-~~~--~--~~~~~~l~k~LkGl~v~~t~d~---~~~lt~~l---------~~~f~r~t~~vSv 393 (459)
+++++|+|||+++++. +.. . ..++.+++++|+|++|.++|.. -++.+|++ ..+|...++.|||
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g~~isv 81 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTI 81 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSSCEEEH
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcCCCEEEH
Confidence 4578999999998832 221 1 1234679999999999888822 12345543 2457777888999
Q ss_pred chhhhhHHHHHHHhhhhhhhhh
Q 012649 394 VPPVYYADLVAYRGRLYHEAVM 415 (459)
Q Consensus 394 ~~p~Yya~~y~~r~r~~~~~~~ 415 (459)
+ +||++. ++++++..++..
T Consensus 82 ~--~Yf~~~-~~~l~~p~lP~l 100 (143)
T 1vyn_A 82 A--SYFHSR-NYPLKFPQLHCL 100 (143)
T ss_dssp H--HHHHHT-TCCCSSTTSEEE
T ss_pred H--HHHHHc-CCCCCCCCCCeE
Confidence 9 999998 999997776654
No 12
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=97.72 E-value=3.9e-06 Score=74.70 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=59.6
Q ss_pred CccHHHHHHHHhccCCCCCccHHHHHHHHhccccccccchhhhhhhcc---------cccccC-CCcceecchhhhhHHH
Q 012649 333 RLPVIDFLQEHINFDVNGFRDWRKVENALKGLKHGFTSDQLQKLIYNM---------CFTFAR-CTKPVSLVPPVYYADL 402 (459)
Q Consensus 333 ~~~lld~i~e~~~~~~~~~~~~~~l~k~LkGl~v~~t~d~~~~lt~~l---------~~~f~r-~t~~vSv~~p~Yya~~ 402 (459)
.+||+|+|.++++.+. ....+.+++++|+|++|.++|. +.+|++ ..+|.. .+..+||+ +||+++
T Consensus 2 ~~tvld~~~~~~~~~~-~~~~~~~~~~~l~g~~V~t~y~---nr~yrI~~i~~~~~p~~~F~~~~g~~~T~~--eYf~~~ 75 (150)
T 2xfm_A 2 SETVLDFMFNLYQQTE-EHKFQEQVSKELIGLIVLTKYN---NKTYRVDDIDWDQNPKSTFKKADGSEVSFL--EYYRKQ 75 (150)
T ss_dssp CCBHHHHHHHHHHHSC-HHHHHHHHHHHHTTCEEEETTT---TEEEECCEEETTCCTTCCCCSSSSCCCCHH--HHHHTT
T ss_pred CccHHHHHHHHHcccc-chHHHHHHHHHhCCcEEEEeeC---CceEEeeecCCCCCccCeeecCCCceeeHH--HHHHHH
Confidence 5799999999886421 0134678999999999988883 455542 345764 46779999 999999
Q ss_pred HHHHhhhhhhhhhc
Q 012649 403 VAYRGRLYHEAVME 416 (459)
Q Consensus 403 y~~r~r~~~~~~~~ 416 (459)
|+++|++..|+.+.
T Consensus 76 Y~i~i~~~~qPlL~ 89 (150)
T 2xfm_A 76 YNQEITDLKQPVLV 89 (150)
T ss_dssp CCCCCCCSSSCEEE
T ss_pred cCCccCCCCCCeEE
Confidence 99999998888755
No 13
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=97.71 E-value=4.7e-06 Score=74.00 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=58.9
Q ss_pred CccHHHHHHHHhccCCCCCccHHHHHHHHhccccccccchhhhhhhc---------ccccccCC-CcceecchhhhhHHH
Q 012649 333 RLPVIDFLQEHINFDVNGFRDWRKVENALKGLKHGFTSDQLQKLIYN---------MCFTFARC-TKPVSLVPPVYYADL 402 (459)
Q Consensus 333 ~~~lld~i~e~~~~~~~~~~~~~~l~k~LkGl~v~~t~d~~~~lt~~---------l~~~f~r~-t~~vSv~~p~Yya~~ 402 (459)
.+||+|+|.++...+. ...+.+++++|+|+.|.++|. +.+|. .+.+|... +..+||+ +||+++
T Consensus 2 ~~tvld~m~~~~~~~~--~~~~~~~~k~l~g~~V~t~yn---nk~YrI~~I~~~~~p~s~F~~~dg~~iT~~--eYf~~k 74 (148)
T 3qir_A 2 NDCVLDVMHAIYQQNK--EHFQDECTKLLVGNIVITRYN---NRTYRIDDVDWNKTPKDSFTMSDGKEITFL--EYYSKN 74 (148)
T ss_dssp CCCHHHHHHHHHHHHH--HHHHHHHHHHHTTCEEEETTT---CCEEECCEEETTCCTTSEEECTTSCEEEHH--HHHHHH
T ss_pred cchHHHHHHHHHhhCc--HHHHHHHHHHcCCCEEEEccC---CcEEEEeeecCCCCcCccccCCCCCcccHH--HHHHHH
Confidence 4699999999864321 135689999999999977773 34443 35568764 5679999 999999
Q ss_pred HHHHhhhhhhhhhc
Q 012649 403 VAYRGRLYHEAVME 416 (459)
Q Consensus 403 y~~r~r~~~~~~~~ 416 (459)
|+++|++..|+.+.
T Consensus 75 Y~i~I~~~~qPlL~ 88 (148)
T 3qir_A 75 YGITVKEEDQPLLI 88 (148)
T ss_dssp HCCCCSCTTCCEEE
T ss_pred cCCeecCCCCceEE
Confidence 99999998888755
No 14
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=97.31 E-value=0.00088 Score=72.74 Aligned_cols=210 Identities=12% Similarity=0.037 Sum_probs=123.9
Q ss_pred eEEEEeeEEEeeec--CCceeEEeEEEEecCCCCCCCCcccccHHHHHHHHHHHHhhCCCCCCCCceEEcCCceEEeCcc
Q 012649 136 TVNIFVNHFPVNFT--PESTIRHYDIDVKPDIGPNHGRPVKLSKTVLAIVRNKLCEDYPDQFPLSMTAYDGEKNIFSAIE 213 (459)
Q Consensus 136 ~V~L~tN~F~l~~~--p~~~iy~YdV~i~p~~~~k~g~~~kl~r~i~~~i~~~Ll~~~~~~f~~~~~ayDG~~~LyS~~~ 213 (459)
++.|.-|-|.|+-. ++...|.|+|.++|..... +..+ ++..++.+ ++ ..|--..+.|.|..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~----~~--~~~~~~~~~~~~~~~ 69 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGRE-----EVYP-----LLAQVARR----AG--GVTVRMGDGLASWSP 69 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTT-----THHH-----HHHHHHHH----TC--SSEEEETTEEEESSC
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcc-----hHHH-----HHHHHHHH----hC--CeEEeecCceecccC
Confidence 58999999999753 4788999999998865432 2222 22334433 22 233333467999877
Q ss_pred CCCc-eeEEEeccCCCCceeEEEEEEEEeeeechHHHHHHhcCCCCCCChhhHHHHHHHHhcCCC------Ccceecccc
Q 012649 214 LPTG-KFNVEFPEGEDMKYRTYVFTIKLVNELKLCKLKEYLTGSLFSIPRDILQGMDVVMKENPS------RRMISVGRS 286 (459)
Q Consensus 214 Lp~~-~~~V~l~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~LnIIlr~~~~------~~~~~vGRs 286 (459)
|+. .++=++.. ......|++.-.-.+.+|+. +...-++|+.+-|..+. .....-|.-
T Consensus 70 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (685)
T 3ho1_A 70 -PEVLVLEGTLAR--MGQTYAYRLYPKGRRPLDPK-------------DPGERSVLSALARRLLQERLRRLEGVWVEGLA 133 (685)
T ss_dssp -TTTSCCEEEEEC--SSCEEEEEEEEEEECCCCTT-------------SHHHHHHHHHHHHHHHHHHHHTCSSSEEETTE
T ss_pred -chhhhccchhcc--ccCCcceeeeecccccCCCC-------------ChHHHHHHHHHHHHHHHHHHHhhhceEEccEE
Confidence 643 12222211 12455677777777778865 33444444444443332 111112222
Q ss_pred cccCCCCCCCCCCCceEEeecceeeeeecc-cceEEEeeeeeceeecCccHHHHHHHHhccCCCCCccHHHHHHHHhccc
Q 012649 287 FHPVEPFPDDDLGYGLTASRGFQHGLKATS-QGLALCLDYSVLAFRKRLPVIDFLQEHINFDVNGFRDWRKVENALKGLK 365 (459)
Q Consensus 287 fF~~~~~~~~~l~~GlE~w~Gf~~SVR~~~-ggL~LNvDvs~~~F~~~~~lld~i~e~~~~~~~~~~~~~~l~k~LkGl~ 365 (459)
.+-.. . .-+.|+|+++|+.-.|-+.. ++++|.||+.|.++. ..++.+++.+.... - ..
T Consensus 134 ~~~~~---~-~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~~~-~~~~~~~l~~~~~~---------------~-~~ 192 (685)
T 3ho1_A 134 VYRRE---H-ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILC-EMSLEAWLAQGHPL---------------P-KR 192 (685)
T ss_dssp EEEEE---E-EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEEE-CSCHHHHHHHSCCC---------------C-SE
T ss_pred EEeec---C-CCCCceEEecceEEEEEECCCCcEEEEEeeheeecC-hhhHHHHHHhCCCc---------------c-HH
Confidence 22211 1 11889999999999999997 899999999999777 57999999885432 1 23
Q ss_pred cccccchhhhhhhc--------ccccccCCCcceecchhhhhHHHHHH
Q 012649 366 HGFTSDQLQKLIYN--------MCFTFARCTKPVSLVPPVYYADLVAY 405 (459)
Q Consensus 366 v~~t~d~~~~lt~~--------l~~~f~r~t~~vSv~~p~Yya~~y~~ 405 (459)
|-.+|+ .+ ||. ...+|-.+ .+|+. +||+++|++
T Consensus 193 v~~~y~-~~--~~~~~~~~~~~p~~~~l~~--~~s~~--~y~~~k~~~ 233 (685)
T 3ho1_A 193 VRNAYD-RR--TWELLRLGEEDPKELPLPG--GLSLL--DYHASKGRL 233 (685)
T ss_dssp EEESSS-CC--EECCCEEECCCTTCC--------CST--TTTTTTSTT
T ss_pred Hhhhcc-cc--eEEEeecccCCchheecCC--CccHH--HHHhhcccc
Confidence 334444 12 222 23333333 78999 999998877
No 15
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=97.09 E-value=0.00011 Score=77.19 Aligned_cols=89 Identities=24% Similarity=0.373 Sum_probs=64.5
Q ss_pred eeeeceeecCccHHHHHHHHh-ccCCCC--CccH--HHHHHHHhccccccccchh---hhhhhccc---------ccccC
Q 012649 324 DYSVLAFRKRLPVIDFLQEHI-NFDVNG--FRDW--RKVENALKGLKHGFTSDQL---QKLIYNMC---------FTFAR 386 (459)
Q Consensus 324 Dvs~~~F~~~~~lld~i~e~~-~~~~~~--~~~~--~~l~k~LkGl~v~~t~d~~---~~lt~~l~---------~~f~r 386 (459)
+...+.|+++++|+|+|.+++ +.+.+. ..++ .+++++||||+|..+|..- .+..|+++ .+|..
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEecc
Confidence 456778999999999999987 443332 2334 4599999999998888432 23334321 34777
Q ss_pred CCcceecchhhhhHHHHHHHhhhhhhhhh
Q 012649 387 CTKPVSLVPPVYYADLVAYRGRLYHEAVM 415 (459)
Q Consensus 387 ~t~~vSv~~p~Yya~~y~~r~r~~~~~~~ 415 (459)
.+++|||. +||+ +|++++|..+.+..
T Consensus 455 ~~~~~sv~--~yf~-~~~~~l~~p~lp~v 480 (509)
T 1r6z_P 455 DGKKVTIA--SYFH-SRNYPLKFPQLHCL 480 (509)
T ss_dssp TTEEEEHH--HHHH-HTTCCCSCTTSEEE
T ss_pred CCeEEEHH--HHHH-HcCCcccCCCCCeE
Confidence 77899999 9999 79999998766543
No 16
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=96.66 E-value=0.00052 Score=75.22 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=40.1
Q ss_pred ccchhhhhhhcccccccCCCcceecchhhhhHHHHHHHhhhhhh
Q 012649 369 TSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHE 412 (459)
Q Consensus 369 t~d~~~~lt~~l~~~f~r~t~~vSv~~p~Yya~~y~~r~r~~~~ 412 (459)
+.|.+|.+||+|||+|.+++++||+++|.||||++|.+++.++.
T Consensus 651 ~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~ 694 (706)
T 1yvu_A 651 PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 694 (706)
T ss_dssp CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhcCC
Confidence 45667899999999999999999999999999999999997765
No 17
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=96.03 E-value=0.0026 Score=69.10 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=37.1
Q ss_pred cccccchhhhhhhcccccccCCC-cceecchhhhhHHHHHH
Q 012649 366 HGFTSDQLQKLIYNMCFTFARCT-KPVSLVPPVYYADLVAY 405 (459)
Q Consensus 366 v~~t~d~~~~lt~~l~~~f~r~t-~~vSv~~p~Yya~~y~~ 405 (459)
.+++.|.+|.+||.|||+|.+|+ ++|++++|.||||+.+.
T Consensus 624 ~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk 664 (685)
T 3ho1_A 624 GDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVK 664 (685)
T ss_dssp ECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCcChHHHHHHHHHH
Confidence 46788899999999999999998 99999999999999994
No 18
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=95.40 E-value=0.005 Score=67.89 Aligned_cols=43 Identities=21% Similarity=0.046 Sum_probs=39.4
Q ss_pred cchhhhhhhcccccccCCCc-ceecchhhhhHHHHHHHhhhhhh
Q 012649 370 SDQLQKLIYNMCFTFARCTK-PVSLVPPVYYADLVAYRGRLYHE 412 (459)
Q Consensus 370 ~d~~~~lt~~l~~~f~r~t~-~vSv~~p~Yya~~y~~r~r~~~~ 412 (459)
.|.+|.+||+||++|-++++ +|++++|.||||+.|..++.+++
T Consensus 714 ~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~lvgq~~~ 757 (771)
T 1u04_A 714 TRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWK 757 (771)
T ss_dssp CHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhhcccCCCCCccCCchHHHHHHHHHHHHhhhc
Confidence 68899999999999998887 99999999999999999987664
No 19
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=94.13 E-value=0.021 Score=59.02 Aligned_cols=43 Identities=21% Similarity=0.096 Sum_probs=38.9
Q ss_pred cchhhhhhhcccccccCCCcceecchhhhhHHHHHHHhhhhhh
Q 012649 370 SDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHE 412 (459)
Q Consensus 370 ~d~~~~lt~~l~~~f~r~t~~vSv~~p~Yya~~y~~r~r~~~~ 412 (459)
.|.+|.++|+||+.+-++++++++++|.||||+.+.++....+
T Consensus 364 ~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~ 406 (427)
T 2w42_A 364 VHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNR 406 (427)
T ss_dssp HHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhh
Confidence 4668899999999999999999999999999999999997554
No 20
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=69.50 E-value=0.32 Score=53.67 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=43.1
Q ss_pred HHHHHHhccccccccchhhh-hhhc---------ccccccCCCcceecchhhhhHHHHHHHhhhhhhhhhc
Q 012649 356 KVENALKGLKHGFTSDQLQK-LIYN---------MCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVME 416 (459)
Q Consensus 356 ~l~k~LkGl~v~~t~d~~~~-lt~~---------l~~~f~r~t~~vSv~~p~Yya~~y~~r~r~~~~~~~~ 416 (459)
.+.+.|+|..|.+.| ++ .+|. ..++|.+.+..+||. +||+++|++++++..|+.+.
T Consensus 151 ~~~~~l~g~vV~t~y---nn~r~Y~i~~id~d~~P~S~F~~~~~~~Ty~--dYYk~ky~i~I~d~~QPLL~ 216 (756)
T 2qvw_A 151 TLSASLHGRMVATPE---ISWSLYVVLGIDSTQTSLSYFTRANESITYM--RYYATAHNIHLRAADLPLVA 216 (756)
T ss_dssp -CTTTSTTCEEEETT---TTTEEEEEEEEEEEEETTSEEEETTEEEEHH--HHHHHTTCCCCSCTTSEEEE
T ss_pred hhHHHhCCCEEecCC---CCceEEEEEEecCCCCCCCcCCCCCCCCCHH--HHHHHHcCcccccCCCCeEE
Confidence 567789999987666 33 4453 345688766789999 99999999999999998643
No 21
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=54.79 E-value=11 Score=22.49 Aligned_cols=9 Identities=44% Similarity=0.852 Sum_probs=3.9
Q ss_pred CCCCccCCC
Q 012649 20 SRGGRTGGG 28 (459)
Q Consensus 20 ~~~~~~~~~ 28 (459)
|||--.|+|
T Consensus 4 ~wgqp~gg~ 12 (26)
T 1oei_A 4 GWGQPHGGG 12 (26)
T ss_dssp SSSSTTSSS
T ss_pred ccCCccCCc
Confidence 454444333
No 22
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=39.74 E-value=14 Score=20.90 Aligned_cols=7 Identities=43% Similarity=0.843 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 012649 13 RGGRDGG 19 (459)
Q Consensus 13 ~~~~~~~ 19 (459)
+||.+++
T Consensus 9 pg~s~~s 15 (21)
T 3u85_B 9 PGTTGGG 15 (26)
T ss_pred CCcccCC
Confidence 3333333
No 23
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus}
Probab=31.45 E-value=25 Score=21.27 Aligned_cols=14 Identities=50% Similarity=1.051 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCC
Q 012649 73 SPQPRPQPPPDPSA 86 (459)
Q Consensus 73 ~~~~~~~~~~~~~~ 86 (459)
+.++||+.||+|++
T Consensus 6 ~rP~rPsrPpP~tp 19 (26)
T 2p4r_T 6 SRPPRPSRPPPPTP 19 (26)
T ss_pred CCCCCCCCCCCCCC
Confidence 34445555544443
No 24
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=24.47 E-value=14 Score=38.32 Aligned_cols=10 Identities=10% Similarity=0.099 Sum_probs=6.3
Q ss_pred eecchhhhhH
Q 012649 391 VSLVPPVYYA 400 (459)
Q Consensus 391 vSv~~p~Yya 400 (459)
+.+.+|+.+.
T Consensus 428 ~~y~aPE~~~ 437 (535)
T 2h8h_A 428 IKWTAPEAAL 437 (535)
T ss_dssp GGGSCHHHHH
T ss_pred ccccCHHHhc
Confidence 4577777653
Done!