Query 012650
Match_columns 459
No_of_seqs 281 out of 560
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 7.3E-15 1.6E-19 126.9 6.6 76 344-424 26-102 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.8 2.7E-05 5.9E-10 49.0 3.2 20 127-146 2-21 (21)
3 KOG0160 Myosin class V heavy c 97.2 0.0012 2.6E-08 75.4 8.6 64 125-192 672-736 (862)
4 smart00015 IQ Short calmodulin 97.2 0.00041 8.9E-09 45.7 3.0 22 125-146 2-23 (26)
5 KOG0520 Uncharacterized conser 96.0 0.0054 1.2E-07 70.6 3.7 68 125-192 809-884 (975)
6 PTZ00014 myosin-A; Provisional 95.2 0.033 7.3E-07 64.0 6.4 40 128-167 779-819 (821)
7 KOG0160 Myosin class V heavy c 94.9 0.09 2E-06 60.5 8.6 66 124-192 694-759 (862)
8 PF00612 IQ: IQ calmodulin-bin 92.0 0.17 3.7E-06 31.7 2.7 19 149-167 2-20 (21)
9 COG5022 Myosin heavy chain [Cy 91.8 0.33 7.1E-06 58.3 6.7 65 125-190 744-809 (1463)
10 KOG2128 Ras GTPase-activating 89.9 0.76 1.6E-05 55.1 7.3 66 127-192 566-640 (1401)
11 KOG0164 Myosin class I heavy c 86.9 1.7 3.7E-05 49.5 7.2 55 127-192 697-752 (1001)
12 smart00015 IQ Short calmodulin 85.7 0.82 1.8E-05 29.9 2.5 20 148-167 3-22 (26)
13 PTZ00014 myosin-A; Provisional 78.9 4.7 0.0001 46.9 6.9 40 150-192 779-818 (821)
14 KOG0520 Uncharacterized conser 77.1 2.3 5E-05 49.8 3.8 62 129-190 836-930 (975)
15 KOG4427 E3 ubiquitin protein l 72.7 3.7 8E-05 47.1 3.8 23 124-146 28-50 (1096)
16 KOG0942 E3 ubiquitin protein l 71.7 3.1 6.6E-05 48.4 3.0 24 123-146 26-49 (1001)
17 KOG0377 Protein serine/threoni 68.6 9.1 0.0002 41.8 5.5 35 124-158 15-49 (631)
18 KOG0163 Myosin class VI heavy 61.9 10 0.00022 43.8 4.5 33 126-158 813-846 (1259)
19 KOG2128 Ras GTPase-activating 60.3 16 0.00035 44.4 6.0 61 130-193 539-611 (1401)
20 KOG0161 Myosin class II heavy 46.4 40 0.00087 42.9 6.5 38 150-187 775-812 (1930)
21 KOG0162 Myosin class I heavy c 45.5 17 0.00038 41.9 3.0 22 128-149 698-719 (1106)
22 COG5022 Myosin heavy chain [Cy 41.2 1.4E+02 0.0031 37.0 9.7 67 124-191 791-859 (1463)
23 KOG0165 Microtubule-associated 37.7 78 0.0017 37.0 6.6 28 124-151 941-969 (1023)
24 KOG0161 Myosin class II heavy 36.4 40 0.00087 42.9 4.5 36 130-165 777-816 (1930)
25 PF08763 Ca_chan_IQ: Voltage g 36.2 36 0.00078 24.6 2.4 21 125-145 8-28 (35)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.55 E-value=7.3e-15 Score=126.87 Aligned_cols=76 Identities=50% Similarity=0.578 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCccchhhhhhHHHhhhccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCC-CCCCCCCCC
Q 012650 344 GDEKSFASSPVVPTYMAATESAKAKARSMSSPKIRPGTFDSYSESYSPCKKKLSLMSSLTSEVPSYSNIG-RPSAYQQRS 422 (459)
Q Consensus 344 ~dD~Sl~ssp~~PsYMa~T~SakAK~Rs~S~PkqR~~~~~~~~~~~~~~kkRlS~~~s~~~~~~~~~~~g-~~s~~~~RS 422 (459)
..++++. . +|+|||+|||||||+|+||+||||++..+.. ...+.+||+|||...++...+..... ....++|||
T Consensus 26 ~~~~s~~-~--~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~--~~~~~~kR~S~~~~~~~~~~~~~~~~~~~~~~~qrS 100 (102)
T PF13178_consen 26 CRRSSFG-S--LPSYMAATESAKAKARSQSAPRQRPGTPERA--EKQSSKKRLSLPGSSNSGSSSSRSPRTSSSSQSQRS 100 (102)
T ss_pred cccCcCC-C--CCCccchhhhhhhhhhccCCcccCCCccccc--cccccccccccCCCCCCCcCCCCCCccccccccCCC
Confidence 3444444 2 9999999999999999999999999876643 45678999999976544443211111 234556999
Q ss_pred CC
Q 012650 423 PS 424 (459)
Q Consensus 423 Ps 424 (459)
|+
T Consensus 101 ps 102 (102)
T PF13178_consen 101 PS 102 (102)
T ss_pred CC
Confidence 86
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.77 E-value=2.7e-05 Score=49.04 Aligned_cols=20 Identities=60% Similarity=0.783 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 012650 127 LAATRIQSIFRGYLARKALR 146 (459)
Q Consensus 127 ~AAi~IQsafRGylARralr 146 (459)
.|||.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999885
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.16 E-value=0.0012 Score=75.37 Aligned_cols=64 Identities=30% Similarity=0.330 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH-HhhhHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 012650 125 RQLAATRIQSIFRGYLARKALR-ALKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 192 (459)
Q Consensus 125 ee~AAi~IQsafRGylARralr-alkglVrLQalvRG~~vRrq~~~tlr~~qa~v~iQs~vRa~r~R~~ 192 (459)
...+++.||+.||||+.|+.|. ..++++.+|+++||.++|+. ++ ..-+++.||..+|+...|+.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHH
Confidence 3445688999999999999998 55678889999999999992 22 66777888888887766654
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.16 E-value=0.00041 Score=45.73 Aligned_cols=22 Identities=50% Similarity=0.659 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 012650 125 RQLAATRIQSIFRGYLARKALR 146 (459)
Q Consensus 125 ee~AAi~IQsafRGylARralr 146 (459)
++.+|+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999984
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.97 E-value=0.0054 Score=70.59 Aligned_cols=68 Identities=31% Similarity=0.356 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHH-------HHHhHHHHHHHHHHHhhhhhc
Q 012650 125 RQLAATRIQSIFRGYLARKALRALK-GIVKLQALIRGRNVRRQAFTTL-------KCLQSIVNIQSQVCAKRCQKA 192 (459)
Q Consensus 125 ee~AAi~IQsafRGylARralralk-glVrLQalvRG~~vRrq~~~tl-------r~~qa~v~iQs~vRa~r~R~~ 192 (459)
...||..||.-||||+.|+.+..++ =+|++|+-|||+.+|+++.... .-+-++-++|+-+|+++.+..
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~ 884 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRAL 884 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccc
Confidence 4567799999999999999999655 5999999999999999997332 344566777888888877666
No 6
>PTZ00014 myosin-A; Provisional
Probab=95.19 E-value=0.033 Score=63.96 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhHHHHHHH-HhhhHHHHHHHhhhhHHHHHH
Q 012650 128 AATRIQSIFRGYLARKALR-ALKGIVKLQALIRGRNVRRQA 167 (459)
Q Consensus 128 AAi~IQsafRGylARralr-alkglVrLQalvRG~~vRrq~ 167 (459)
.++.||+++|||++|+.|. ...++++||+.+||+++++..
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999998 577899999999999988764
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=94.87 E-value=0.09 Score=60.52 Aligned_cols=66 Identities=26% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 012650 124 IRQLAATRIQSIFRGYLARKALRALKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 192 (459)
Q Consensus 124 ~ee~AAi~IQsafRGylARralralkglVrLQalvRG~~vRrq~~~tlr~~qa~v~iQs~vRa~r~R~~ 192 (459)
....+++.||..+||+++|+........+.+|..+|++..|+++ .....+++.+|+.+|+..+|..
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 34456799999999999998322455778889999999999999 5556788999999999988874
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=92.04 E-value=0.17 Score=31.66 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=17.0
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 012650 149 KGIVKLQALIRGRNVRRQA 167 (459)
Q Consensus 149 kglVrLQalvRG~~vRrq~ 167 (459)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999986
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=91.83 E-value=0.33 Score=58.33 Aligned_cols=65 Identities=28% Similarity=0.267 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH-HhhhHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 012650 125 RQLAATRIQSIFRGYLARKALR-ALKGIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQ 190 (459)
Q Consensus 125 ee~AAi~IQsafRGylARralr-alkglVrLQalvRG~~vRrq~~~tlr~~qa~v~iQs~vRa~r~R 190 (459)
-...+++||++||||+.||.+. +++.+..+|.+.+|..+++... .---...+..+|..++...-|
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVD-YELKWRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-cchHHHhHHHhhHHhHHHhhH
Confidence 3457899999999999999988 8899999999999988886653 333345666777766655443
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=89.89 E-value=0.76 Score=55.15 Aligned_cols=66 Identities=32% Similarity=0.384 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhhHH---HHH-HH-HhhhHHHHHHHhhhhHHHHHHHH----HHHHHhHHHHHHHHHHHhhhhhc
Q 012650 127 LAATRIQSIFRGYLA---RKA-LR-ALKGIVKLQALIRGRNVRRQAFT----TLKCLQSIVNIQSQVCAKRCQKA 192 (459)
Q Consensus 127 ~AAi~IQsafRGylA---Rra-lr-alkglVrLQalvRG~~vRrq~~~----tlr~~qa~v~iQs~vRa~r~R~~ 192 (459)
-.-+.||.+.|||+. +.. +. ..+-+|++|++.||+++|+.+.. -..||...+.||+-+|.+..|..
T Consensus 566 P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 566 PFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred chHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 345889999999993 333 33 67789999999999999999873 34699999999999999987765
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=86.89 E-value=1.7 Score=49.47 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHH-HHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 012650 127 LAATRIQSIFRGYLARKALRALKGIV-KLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 192 (459)
Q Consensus 127 ~AAi~IQsafRGylARralralkglV-rLQalvRG~~vRrq~~~tlr~~qa~v~iQs~vRa~r~R~~ 192 (459)
.-++.||.+|||+++|..|+.++... .++ -.|.+.++-- +-.||.++|+.+.++.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks~----------v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKSY----------VQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----------HHHHHHHHHhhhhccc
Confidence 35789999999999999999777544 445 5564433322 3456788888877665
No 12
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=85.71 E-value=0.82 Score=29.95 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.6
Q ss_pred hhhHHHHHHHhhhhHHHHHH
Q 012650 148 LKGIVKLQALIRGRNVRRQA 167 (459)
Q Consensus 148 lkglVrLQalvRG~~vRrq~ 167 (459)
.+.++.||+.+||+.+|+++
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999987
No 13
>PTZ00014 myosin-A; Provisional
Probab=78.86 E-value=4.7 Score=46.90 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=34.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Q 012650 150 GIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQKA 192 (459)
Q Consensus 150 glVrLQalvRG~~vRrq~~~tlr~~qa~v~iQs~vRa~r~R~~ 192 (459)
-++.||+.+||+..|+.+ ++..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 466789999999999999 4457899999999999877653
No 14
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=77.12 E-value=2.3 Score=49.80 Aligned_cols=62 Identities=26% Similarity=0.294 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhHHHHHHHH-hhhH----------HHHHHHhhhhHHHHHH----------------------HHHHHHHh
Q 012650 129 ATRIQSIFRGYLARKALRA-LKGI----------VKLQALIRGRNVRRQA----------------------FTTLKCLQ 175 (459)
Q Consensus 129 Ai~IQsafRGylARralra-lkgl----------VrLQalvRG~~vRrq~----------------------~~tlr~~q 175 (459)
+|+||+++|||-.|+.|+. ..++ -++|.-+||+..|+-. ....+--+
T Consensus 836 ~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~ 915 (975)
T KOG0520|consen 836 IVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLTR 915 (975)
T ss_pred cccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999873 2221 1236677776655432 12334557
Q ss_pred HHHHHHHHHHHhhhh
Q 012650 176 SIVNIQSQVCAKRCQ 190 (459)
Q Consensus 176 a~v~iQs~vRa~r~R 190 (459)
|+++||+.+|....+
T Consensus 916 A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 916 AVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHhcCHHHH
Confidence 899999999987766
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.65 E-value=3.7 Score=47.10 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Q 012650 124 IRQLAATRIQSIFRGYLARKALR 146 (459)
Q Consensus 124 ~ee~AAi~IQsafRGylARralr 146 (459)
+.+.||+.||..+|||++|+.+.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999887
No 16
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=3.1 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Q 012650 123 EIRQLAATRIQSIFRGYLARKALR 146 (459)
Q Consensus 123 ~~ee~AAi~IQsafRGylARralr 146 (459)
.++|.+|++||+.+|||++|+..+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 467889999999999999999876
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=68.63 E-value=9.1 Score=41.77 Aligned_cols=35 Identities=31% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHh
Q 012650 124 IRQLAATRIQSIFRGYLARKALRALKGIVKLQALI 158 (459)
Q Consensus 124 ~ee~AAi~IQsafRGylARralralkglVrLQalv 158 (459)
+--.|||.||.-||+|.||...|..-..-.+|+|=
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslE 49 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLE 49 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHh
Confidence 34678999999999999999988766777778764
No 18
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=61.91 E-value=10 Score=43.78 Aligned_cols=33 Identities=45% Similarity=0.650 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHH-HhhhHHHHHHHh
Q 012650 126 QLAATRIQSIFRGYLARKALR-ALKGIVKLQALI 158 (459)
Q Consensus 126 e~AAi~IQsafRGylARralr-alkglVrLQalv 158 (459)
..+.+++|...||||+|+.++ .+-|++++-+|.
T Consensus 813 ae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 813 AECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 344599999999999999998 777777775543
No 19
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=60.31 E-value=16 Score=44.45 Aligned_cols=61 Identities=28% Similarity=0.273 Sum_probs=47.0
Q ss_pred HHHHHHhhhhHHHHHHHHhh--------hHHHHHHHhhhhHHHHHHH----HHHHHHhHHHHHHHHHHHhhhhhcc
Q 012650 130 TRIQSIFRGYLARKALRALK--------GIVKLQALIRGRNVRRQAF----TTLKCLQSIVNIQSQVCAKRCQKAG 193 (459)
Q Consensus 130 i~IQsafRGylARralralk--------glVrLQalvRG~~vRrq~~----~tlr~~qa~v~iQs~vRa~r~R~~~ 193 (459)
.+||+..|||..|-.++... .++.+|+++||.++ ++ .......-++.+|+..|+...|...
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 56799999999999887433 57889999999886 32 1223445689999999999988873
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.35 E-value=40 Score=42.89 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=24.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 012650 150 GIVKLQALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAK 187 (459)
Q Consensus 150 glVrLQalvRG~~vRrq~~~tlr~~qa~v~iQs~vRa~ 187 (459)
-|+.+||.|||+++|+.+......+.++..||..+|.+
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666666665
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=45.51 E-value=17 Score=41.89 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhh
Q 012650 128 AATRIQSIFRGYLARKALRALK 149 (459)
Q Consensus 128 AAi~IQsafRGylARralralk 149 (459)
=|.+||.|||.|++||.+-.+|
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999888666
No 22
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=41.19 E-value=1.4e+02 Score=37.05 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH-HhhhHHHHH-HHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 012650 124 IRQLAATRIQSIFRGYLARKALR-ALKGIVKLQ-ALIRGRNVRRQAFTTLKCLQSIVNIQSQVCAKRCQK 191 (459)
Q Consensus 124 ~ee~AAi~IQsafRGylARralr-alkglVrLQ-alvRG~~vRrq~~~tlr~~qa~v~iQs~vRa~r~R~ 191 (459)
....++++||..+|.+.-|..++ .+..+..|| .+.+...++-. ..--..+.+.+-+|+.+|+...+.
T Consensus 791 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~-~e~~~~~~~~~L~~~~~rs~~~~k 859 (1463)
T COG5022 791 LKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRET-EEVEFSLKAEVLIQKFGRSLKAKK 859 (1463)
T ss_pred hHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34556777777777777777777 566677777 44444444432 233445566666777766655443
No 23
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=37.74 E-value=78 Score=36.98 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH-HhhhH
Q 012650 124 IRQLAATRIQSIFRGYLARKALR-ALKGI 151 (459)
Q Consensus 124 ~ee~AAi~IQsafRGylARralr-alkgl 151 (459)
....||+.||.+.|||++|+.|. .+..|
T Consensus 941 nkKkaavviqkmirgfiarrkfqmeisni 969 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQMEISNI 969 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998 44333
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=36.36 E-value=40 Score=42.89 Aligned_cols=36 Identities=42% Similarity=0.518 Sum_probs=27.3
Q ss_pred HHHHHHhhhhHHHHHHH----HhhhHHHHHHHhhhhHHHH
Q 012650 130 TRIQSIFRGYLARKALR----ALKGIVKLQALIRGRNVRR 165 (459)
Q Consensus 130 i~IQsafRGylARralr----alkglVrLQalvRG~~vRr 165 (459)
+.+|+.+||||+|+.|. .+-+|..||.=+|-+..-|
T Consensus 777 ~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 777 TLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78899999999999886 3447888887666554333
No 25
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=36.20 E-value=36 Score=24.64 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 012650 125 RQLAATRIQSIFRGYLARKAL 145 (459)
Q Consensus 125 ee~AAi~IQsafRGylARral 145 (459)
+--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999998853
Done!