BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012651
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 113/124 (91%)
Query: 45 AGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 104
+G+RTFGVLTK+DLMDKGT+A+++LEGRS++L++PWVG+VNRSQADIN+N+DMI AR++E
Sbjct: 202 SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKRE 261
Query: 105 REYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLG 164
REYF+ + +Y HLA KMGSE+LAK+LSKHLE VI+SRIP I SLINK++ ELE+E+ LG
Sbjct: 262 REYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLG 321
Query: 165 RPIA 168
+PIA
Sbjct: 322 KPIA 325
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 428 DPAMMERRLQCAKRLELYKAARDEIDSV 455
DPA+MERR +KRLELY+AA+ EID+V
Sbjct: 333 DPAIMERRSAISKRLELYRAAQSEIDAV 360
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 153/321 (47%), Gaps = 16/321 (4%)
Query: 46 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 105
G+RT GV+TKLDLMD+GT+A DVLE + L+ ++G+VNRSQ DI+ D+ A ER
Sbjct: 194 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 253
Query: 106 EYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGR 165
++F + P Y HLA +MG+ YL K+L++ L + IR +P + + + + +E E++
Sbjct: 254 KFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKN 313
Query: 166 PIAVDAGAQLYTILELCRAFDRIFKEHLDGG--------RPGGDRIYGVFDNQLPAALRK 217
D + +L++ + F F++ ++G GG RI +F + P L K
Sbjct: 314 FRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVK 373
Query: 218 LPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLK 277
+ FD + + + A L P+ + +++ + R P D V+
Sbjct: 374 MEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQVKKIREPCLKCVD---MVIS 430
Query: 278 ELVRKSIGETQELKRFPTLQXXXXXXXXXXXXRFRDEGRKTVIRLVDMEASYLTVEF--- 334
EL+ T++L+++P L+ ++ V+ L+D+E +Y+
Sbjct: 431 ELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDF 490
Query: 335 --FRKLPQEVEKAGNPGNSGN 353
F Q + SGN
Sbjct: 491 IGFANAQQRSNQMNKKKTSGN 511
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 326 EASYLTVEFFRKLPQEVEKAGNPGNSG-NTASQAVDRYSDGHFRRIGSNVSSYVGMVSET 384
+AS+L + + + EKA +G ++ ++D + I + V SY+ +V++T
Sbjct: 614 KASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKT 673
Query: 385 LRTTIPKAIVYCQVREAK 402
+R +PK I++ + K
Sbjct: 674 VRDLMPKTIMHLMINNTK 691
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 153/321 (47%), Gaps = 16/321 (4%)
Query: 46 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 105
G+RT GV+TKLDLMD+GT+A DVLE + L+ ++G+VNRSQ DI+ D+ A ER
Sbjct: 217 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 276
Query: 106 EYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGR 165
++F + P Y HLA +MG+ YL K+L++ L + IR +P + + + + +E E+D
Sbjct: 277 KFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336
Query: 166 PIAVDAGAQLYTILELCRAFDRIFKEHLDGG--------RPGGDRIYGVFDNQLPAALRK 217
D + +L++ + F F++ ++G GG RI +F + P L K
Sbjct: 337 FRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVK 396
Query: 218 LPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLK 277
+ FD + + + + L P+ + ++ + + P+ D V L
Sbjct: 397 MEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELT 456
Query: 278 ELVRKSIGETQELKRFPTLQXXXXXXXXXXXXRFRDEGRKTVIRLVDMEASYLTVEF--- 334
+RK +++L+++P L+ ++ V+ L+D+E +Y+
Sbjct: 457 STIRKC---SEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDF 513
Query: 335 --FRKLPQEVEKAGNPGNSGN 353
F Q + SGN
Sbjct: 514 IGFANAQQRSNQMNKKKTSGN 534
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 326 EASYLTVEFFRKLPQEVEKAGNPGNSG-NTASQAVDRYSDGHFRRIGSNVSSYVGMVSET 384
+AS+L + + + EKA +G ++ ++D + I + V SY+ +V++T
Sbjct: 637 KASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKT 696
Query: 385 LRTTIPKAIVYCQVREAK 402
+R +PK I++ + K
Sbjct: 697 VRDLMPKTIMHLMINNTK 714
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 78/116 (67%)
Query: 46 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 105
G+RT GV+TKLDLMD+GT+A DVLE + L+ ++G+VNRSQ DI+ D+ A ER
Sbjct: 197 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 256
Query: 106 EYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 161
++F + P Y HLA +MG+ YL K+L++ L + IR +P + + + + +E E++
Sbjct: 257 KFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%)
Query: 46 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 105
G+RT GV+TKLDLMD+GT+A DVLE + L+ ++G+VNRSQ DI+ D+ A ER
Sbjct: 192 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251
Query: 106 EYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSI 145
++F + P Y HLA +MG+ YL K+L++ L + IR +P +
Sbjct: 252 KFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 291
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 76/116 (65%)
Query: 46 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 105
G+RT GV+TKLDL D+GT+A DVLE + L+ ++G+VNRSQ DI+ D+ A ER
Sbjct: 197 GQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 256
Query: 106 EYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 161
++F + P Y HLA + G+ YL K+L++ L + IR +P + + + + +E E++
Sbjct: 257 KFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 69/99 (69%)
Query: 46 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 105
G RT GV+TKLDLMD+GT+A DVLE + L+ +VG+VNRSQ DI+ D+ A ER
Sbjct: 210 GLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAER 269
Query: 106 EYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPS 144
++F + P Y H+A +MG+ +L K+L++ L + IR +P+
Sbjct: 270 KFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPN 308
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 72/115 (62%)
Query: 46 GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 105
G+RT GV+TKLDLMDKGT+A++VL GR L ++G++NRSQ DI + + + E
Sbjct: 198 GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257
Query: 106 EYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEM 160
YF P Y +A + G+ YL+K L+K L IR +P + ++K + +++ E+
Sbjct: 258 LYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGEL 312
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 46 GERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 103
G+RT G+LTK DL+DKGT +DV+ + L+ ++ + R Q +I + + A ++
Sbjct: 239 GDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQR 298
Query: 104 EREYFATSPDYGHL--AGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 161
E+ +F P + L GK LA+ L+ L + I +P + + I ++ + + E+
Sbjct: 299 EKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQ 358
Query: 162 HLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVF 207
G I D +++ +++ AF++ + G G+ +F
Sbjct: 359 KYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLF 404
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 46 GERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 103
G+RT G+LTK DL+DKGT +DV+ + L+ ++ + R Q +I + + A ++
Sbjct: 214 GDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQR 273
Query: 104 EREYFATSPDYGHL--AGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 161
E+ +F P + L GK LA+ L+ L + I +P + + I ++ + + E+
Sbjct: 274 EKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQ 333
Query: 162 HLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVF 207
G I D +++ +++ AF++ + G G+ +F
Sbjct: 334 KYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLF 379
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 137 VIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYT 177
++ SR P SL+ K+ EL+ E+D +G+ +AV G L T
Sbjct: 64 LVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKT 104
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 93 RNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRS---RIPSITSLI 149
RN+ ++V R +E+ P++ ++A G E + + L HL + + + P IT+LI
Sbjct: 38 RNLWVLVVGRFPKEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLI 97
Query: 150 NKSIEELESEMDHLG-----RP-IAVDAGAQLYTILELCRAFDRIFK 190
N + + M+ G +P G + Y +L R F F+
Sbjct: 98 NSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFE 144
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 188 IFKEHLDG--GRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIA 245
+ ++ DG G PGG R+ A+R +P R L + E D + P A
Sbjct: 411 VVRDSPDGLVGMPGGGRV------APEEAVRDVPLTRELYI--------ERDDFSP---A 453
Query: 246 PEQGYRRLIEGSLSYFRGPAEASAD 270
P +G++RL G RG AD
Sbjct: 454 PPKGFKRLTPGGTVRLRGAGIIRAD 478
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,725,010
Number of Sequences: 62578
Number of extensions: 507637
Number of successful extensions: 1098
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 25
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)