Query 012651
Match_columns 459
No_of_seqs 161 out of 1072
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 8E-69 1.7E-73 573.4 40.1 453 2-458 144-656 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 1.8E-55 4E-60 436.4 25.0 266 65-332 1-275 (295)
3 PF02212 GED: Dynamin GTPase e 99.8 2.4E-20 5.3E-25 152.6 11.3 89 365-455 4-92 (92)
4 smart00302 GED Dynamin GTPase 99.8 1.1E-19 2.3E-24 148.5 12.4 89 365-455 4-92 (92)
5 smart00053 DYNc Dynamin, GTPas 99.8 1.9E-18 4.1E-23 165.2 8.9 91 3-93 138-239 (240)
6 KOG0447 Dynamin-like GTP bindi 99.5 7.3E-14 1.6E-18 142.0 7.3 151 5-161 427-599 (980)
7 COG0699 Predicted GTPases (dyn 98.4 0.00028 6E-09 75.7 29.6 401 3-450 66-542 (546)
8 cd05131 RasGAP_IQGAP2 IQGAP2 i 73.8 52 0.0011 33.4 12.2 217 104-337 29-274 (339)
9 PF10662 PduV-EutP: Ethanolami 68.9 2.5 5.3E-05 37.4 1.2 15 46-60 89-103 (143)
10 COG4917 EutP Ethanolamine util 66.4 6 0.00013 34.2 3.0 13 48-60 92-104 (148)
11 COG0218 Predicted GTPase [Gene 65.6 43 0.00094 31.3 8.7 54 9-63 86-152 (200)
12 KOG0446 Vacuolar sorting prote 62.6 21 0.00046 39.6 7.2 155 6-167 292-455 (657)
13 PF02344 Myc-LZ: Myc leucine z 53.9 13 0.00029 23.7 2.2 27 422-448 4-30 (32)
14 PF15027 DUF4525: Domain of un 52.0 15 0.00033 31.4 3.0 23 4-26 35-57 (138)
15 PF08429 PLU-1: PLU-1-like pro 43.9 3.4E+02 0.0074 27.1 13.7 48 223-270 179-226 (335)
16 PF00350 Dynamin_N: Dynamin fa 43.1 25 0.00055 30.9 3.3 39 18-56 120-168 (168)
17 cd05133 RasGAP_IQGAP1 IQGAP1 i 41.3 4.1E+02 0.0089 27.2 12.3 216 104-336 29-273 (360)
18 PF15296 Codanin-1_C: Codanin- 37.5 68 0.0015 27.5 4.8 52 100-155 68-120 (121)
19 PF04583 Baculo_p74: Baculovir 36.3 26 0.00056 33.7 2.3 56 105-160 13-68 (249)
20 cd04414 NDPk6 Nucleoside dipho 34.2 32 0.00069 30.0 2.4 49 47-111 1-52 (135)
21 PRK09343 prefoldin subunit bet 34.0 1.7E+02 0.0036 25.0 6.7 56 138-201 65-120 (121)
22 PF13080 DUF3926: Protein of u 32.5 70 0.0015 21.8 3.2 34 137-170 2-36 (44)
23 KOG1895 mRNA cleavage and poly 31.2 8E+02 0.017 28.6 13.1 186 119-324 703-894 (957)
24 cd00880 Era_like Era (E. coli 29.8 54 0.0012 27.4 3.2 18 45-62 103-120 (163)
25 PF15011 CK2S: Casein Kinase 2 29.2 4.3E+02 0.0094 23.9 9.4 71 253-324 9-85 (168)
26 COG3963 Phospholipid N-methylt 28.5 46 0.001 30.4 2.4 39 18-57 14-66 (194)
27 cd05132 RasGAP_GAPA GAPA is an 27.1 6.6E+02 0.014 25.3 14.8 36 104-139 28-68 (331)
28 KOG2423 Nucleolar GTPase [Gene 26.7 37 0.00079 35.1 1.6 45 41-87 223-285 (572)
29 PF05823 Gp-FAR-1: Nematode fa 26.6 3.2E+02 0.0068 24.3 7.5 59 133-198 44-102 (154)
30 cd04418 NDPk5 Nucleoside dipho 25.3 54 0.0012 28.4 2.3 49 47-111 1-49 (132)
31 PF10264 Stork_head: Winged he 24.2 74 0.0016 25.2 2.6 15 70-84 64-78 (80)
32 TIGR03598 GTPase_YsxC ribosome 22.1 1.4E+02 0.0031 26.5 4.5 52 9-61 80-144 (179)
33 PF09628 YvfG: YvfG protein; 21.4 2.4E+02 0.0052 20.9 4.5 30 373-402 28-59 (68)
34 PRK00668 ndk mulitfunctional n 21.1 97 0.0021 26.8 3.1 49 47-111 2-52 (134)
35 cd04415 NDPk7A Nucleoside diph 20.6 71 0.0015 27.6 2.1 49 47-111 1-49 (131)
36 cd00595 NDPk Nucleoside diphos 20.5 89 0.0019 26.9 2.7 49 47-111 1-51 (133)
37 PF10907 DUF2749: Protein of u 20.5 1.7E+02 0.0036 22.2 3.6 23 95-117 34-56 (66)
38 PRK14545 nucleoside diphosphat 20.4 1.1E+02 0.0025 26.7 3.3 51 45-111 2-54 (139)
39 cd01876 YihA_EngB The YihA (En 20.3 1.3E+02 0.0029 25.5 3.8 54 9-62 61-126 (170)
40 PRK03355 glycerol-3-phosphate 20.0 6E+02 0.013 29.0 9.6 52 403-456 722-773 (783)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=8e-69 Score=573.40 Aligned_cols=453 Identities=34% Similarity=0.442 Sum_probs=401.5
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHhcCC------CCCcHHHHH-----HHHhcCCCCCccceeccCCCccCCcchHHHhHh
Q 012651 2 KLAREVDPTGTVHLLSSVVKLYILCRK------LSSNLILSY-----KLIERTVAGERTFGVLTKLDLMDKGTNALDVLE 70 (459)
Q Consensus 2 ~v~~~~q~~~~~~~V~~lv~~Yi~~~~------~p~n~~i~~-----~a~~vDp~g~RTiGVlTK~D~~d~g~~~~~il~ 70 (459)
+||+++||+++..+|++|+++||+++. +|+|+++++ .|++|||.|.||||||||.|+||+||+++++|.
T Consensus 144 kvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~ 223 (657)
T KOG0446|consen 144 KVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLV 223 (657)
T ss_pred ccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeec
Confidence 799999999999999999999999985 589988866 489999999999999999999999999999999
Q ss_pred CCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 012651 71 GRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLIN 150 (459)
Q Consensus 71 ~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~ 150 (459)
|+.+++++||++|+||+|+||+.+.++.+|+.+|..||.+||.|+.+..++|+++|+..|+..|..||+.+||.|+..|+
T Consensus 224 g~~~~l~~g~v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~ 303 (657)
T KOG0446|consen 224 GRPITLKVGYVGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKIN 303 (657)
T ss_pred CCccccccceeeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccCC--------CCcchhhhhHhhhHHHHhccCCccc
Q 012651 151 KSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDR 222 (459)
Q Consensus 151 ~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~--------~g~~ri~~~f~~~f~~~~~~~~~~~ 222 (459)
.++.+.+.+|..||. +++.......++.+++.|+..+...+.|.. +||+|++++|++.|+..+..+++.+
T Consensus 304 ~~~~~~~~el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~ 381 (657)
T KOG0446|consen 304 KLLEKYQDELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDR 381 (657)
T ss_pred HHHHHHHHHHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcch
Confidence 999999999999996 222233344578888899888888887762 5789999999999999999999999
Q ss_pred cCCchhHHHHhhhhcCCCCCCCCChhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcchhcccCchhHHHHHHH
Q 012651 223 HLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAA 302 (459)
Q Consensus 223 ~~~~~~i~~~i~~~~G~~p~~f~p~~~~~~li~~~i~~w~~pa~~~~~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~v~~ 302 (459)
.+...+|++++.+++|++|++|.|+.+|+.+++++++.+++|+.+|++.|++++..++.++...+ .+.+||.|+.++.+
T Consensus 382 ~~~~~~i~~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~ 460 (657)
T KOG0446|consen 382 KLLGQNIEKLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVE 460 (657)
T ss_pred hhhHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988643 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCH---HHhhhchHH---HHh----------------hCCCCCC----CCCC-
Q 012651 303 AANEALERFRDEGRKTVIRLVDMEASYLTV---EFFRKLPQE---VEK----------------AGNPGNS----GNTA- 355 (459)
Q Consensus 303 ~~~~~L~~~~~~~~~~v~~li~~E~~~~~~---d~~~~~~~~---~~k----------------~~~~~~~----~~~~- 355 (459)
++.+++.++.++++++|.++++||.+|+|| ||+....+. ... .+.+... ..+.
T Consensus 461 ~~~~~~~~~~~~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (657)
T KOG0446|consen 461 IASSLIAEGLDETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAV 540 (657)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchh
Confidence 999999999999999999999999999987 454432112 111 0111100 0000
Q ss_pred -------CCcc-------cCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 012651 356 -------SQAV-------DRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQL 421 (459)
Q Consensus 356 -------~~~~-------~~~~~~~~~~i~~~l~aYy~ia~kr~~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~ 421 (459)
+..+ +.....+++.+..++.+||.+++++++|+||++|+|+|++.+.+.|+.+|+..|+. +.+.+
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~-~~~~~ 619 (657)
T KOG0446|consen 541 GSIRLDPSDIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA-GDEQL 619 (657)
T ss_pred hhhhhcccchhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHH
Confidence 0000 11112345788899999999999999999999999999999999999999999998 36889
Q ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 012651 422 GQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVSWA 458 (459)
Q Consensus 422 ~~Ll~E~~~i~~~R~~L~~~~~~L~~A~~~L~~i~~~ 458 (459)
++|+.|+|.++.+|+.+++++++|++|+.++..+.|+
T Consensus 620 ~~ll~E~~~i~~~R~~~~~~l~~L~~a~~ii~~~~~~ 656 (657)
T KOG0446|consen 620 ESLLKEDPRIKRRRELQQKRLLALQKALSILATVAQA 656 (657)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998876
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.8e-55 Score=436.36 Aligned_cols=266 Identities=32% Similarity=0.525 Sum_probs=241.1
Q ss_pred HHHhHhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhhcHH
Q 012651 65 ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPS 144 (459)
Q Consensus 65 ~~~il~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~ 144 (459)
+++||+|+++||+||||||+||||+|++++.|+++|++.|++||++||+|+..+++|||++|+.+|+++|.+||+++||.
T Consensus 1 ~~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~ 80 (295)
T PF01031_consen 1 AMDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPS 80 (295)
T ss_dssp SHHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcH
Confidence 47999999999999999999999999999999999999999999999999997799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccCCC---------CcchhhhhHhhhHHHHh
Q 012651 145 ITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP---------GGDRIYGVFDNQLPAAL 215 (459)
Q Consensus 145 l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~---------g~~ri~~~f~~~f~~~~ 215 (459)
|+.+|+++|++++.+|+.||++++++.++++.+|+++++.|++.++++++|.|. ||++|+++|++.|...+
T Consensus 81 l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~ 160 (295)
T PF01031_consen 81 LKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFL 160 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhh
Confidence 999999999999999999999999666777888999999999999999999985 47899999999999988
Q ss_pred ccCCccccCCchhHHHHhhhhcCCCCCCCCChhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcchhcccCchh
Q 012651 216 RKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPT 295 (459)
Q Consensus 216 ~~~~~~~~~~~~~i~~~i~~~~G~~p~~f~p~~~~~~li~~~i~~w~~pa~~~~~~V~~~l~~~v~~~~~~~~~~~~fp~ 295 (459)
...++.+.++.++|+++|++++|+++++|.|+.+|+.|++++++.|++||..|++.|++.+.+++..++. .+|.+||.
T Consensus 161 ~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~ 238 (295)
T PF01031_consen 161 EKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPN 238 (295)
T ss_dssp HHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHH
T ss_pred hhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchH
Confidence 8888777889999999999999999999999999999999999999999999999999999999999887 49999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCH
Q 012651 296 LQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTV 332 (459)
Q Consensus 296 L~~~v~~~~~~~L~~~~~~~~~~v~~li~~E~~~~~~ 332 (459)
|++++.+++.++++++.++|.++|+++++||++|+||
T Consensus 239 L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T 275 (295)
T PF01031_consen 239 LKEAIKEAVQQLLEECREPAKEMIENLIDMELSYINT 275 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999987
No 3
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.83 E-value=2.4e-20 Score=152.61 Aligned_cols=89 Identities=26% Similarity=0.420 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHhhhhCCCHHHHHHHHHHHHHHHH
Q 012651 365 GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLEL 444 (459)
Q Consensus 365 ~~~~~i~~~l~aYy~ia~kr~~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~Ll~E~~~i~~~R~~L~~~~~~ 444 (459)
.++.+|++++.|||+||++||+|+|||+|+|||++.+.+.|+.+|+..|+.. +.+++||+|||+++++|+.|++++++
T Consensus 4 ~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~--~~~~~Ll~Ed~~i~~kR~~l~~~~~~ 81 (92)
T PF02212_consen 4 REVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDE--EDLEELLQEDPEIAEKREELKKKLER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--GGCCCCT--GHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccch--HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999975 34999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 012651 445 YKAARDEIDSV 455 (459)
Q Consensus 445 L~~A~~~L~~i 455 (459)
|++|+++|.+|
T Consensus 82 L~~A~~~L~~~ 92 (92)
T PF02212_consen 82 LKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999875
No 4
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.82 E-value=1.1e-19 Score=148.52 Aligned_cols=89 Identities=42% Similarity=0.581 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHhhhhCCCHHHHHHHHHHHHHHHH
Q 012651 365 GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLEL 444 (459)
Q Consensus 365 ~~~~~i~~~l~aYy~ia~kr~~D~Vp~~I~~~Lv~~~~~~l~~~l~~~L~~~~~~~~~~Ll~E~~~i~~~R~~L~~~~~~ 444 (459)
.++..|..++.+||+|+++++.|+|||+|+||||+.+.+.++.+|+..|+.. +.+++||+|||+++++|+.|++++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~--~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKE--ELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCc--ccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999974 67999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 012651 445 YKAARDEIDSV 455 (459)
Q Consensus 445 L~~A~~~L~~i 455 (459)
|++|+++|+.|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999865
No 5
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.75 E-value=1.9e-18 Score=165.25 Aligned_cols=91 Identities=37% Similarity=0.501 Sum_probs=81.6
Q ss_pred cCCCCCChhhHHHHHHHHHHHHhcCC------C-----CCcHHHHHHHHhcCCCCCccceeccCCCccCCcchHHHhHhC
Q 012651 3 LAREVDPTGTVHLLSSVVKLYILCRK------L-----SSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEG 71 (459)
Q Consensus 3 v~~~~q~~~~~~~V~~lv~~Yi~~~~------~-----p~n~~i~~~a~~vDp~g~RTiGVlTK~D~~d~g~~~~~il~~ 71 (459)
++.++|+.++..+|++|++.||++++ + ++|.+....|+.+||.|.|||||+||+|.+++|++|+++|+|
T Consensus 138 ~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~ 217 (240)
T smart00053 138 VAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILEN 217 (240)
T ss_pred cccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhC
Confidence 45678889999999999999999875 1 345566677999999999999999999999999999999999
Q ss_pred CccccCCCEEEEEcCChhhhhc
Q 012651 72 RSYRLQHPWVGIVNRSQADINR 93 (459)
Q Consensus 72 ~~~~l~lG~~~v~nr~~~d~~~ 93 (459)
+.++|+||||+|+||||+|++.
T Consensus 218 ~~~~l~~g~~~v~nr~~~d~~~ 239 (240)
T smart00053 218 KLLPLRRGYIGVVNRSQKDIEG 239 (240)
T ss_pred CccccCCCEEEEECCChHHhhc
Confidence 9999999999999999999864
No 6
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.46 E-value=7.3e-14 Score=142.03 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=119.5
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCCCcHHHHH--------------HHHhcCCCCCccceeccCCCccCCcc---h-HH
Q 012651 5 REVDPTGTVHLLSSVVKLYILCRKLSSNLILSY--------------KLIERTVAGERTFGVLTKLDLMDKGT---N-AL 66 (459)
Q Consensus 5 ~~~q~~~~~~~V~~lv~~Yi~~~~~p~n~~i~~--------------~a~~vDp~g~RTiGVlTK~D~~d~g~---~-~~ 66 (459)
+.|.-.+..+.|-.|.|.||+|| +.+|+|. +....||.|.|||-||||.|+.++.. + ..
T Consensus 427 T~dMA~dTKd~I~~msKayM~NP---NAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~ 503 (980)
T KOG0447|consen 427 TSGMAPDTKETIFSISKAYMQNP---NAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQ 503 (980)
T ss_pred cccccccchHHHHHHHHHHhcCC---CeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHH
Confidence 45667788999999999999994 5555543 25788999999999999999998732 2 57
Q ss_pred HhHhCCccccC-CCEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCc---cCCCChHHHHHHHHHHHHHHHHhhc
Q 012651 67 DVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL---AGKMGSEYLAKLLSKHLESVIRSRI 142 (459)
Q Consensus 67 ~il~~~~~~l~-lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~---~~~~G~~~L~~~L~~~L~~~i~~~L 142 (459)
+||.|+.+|++ ||||+|+.--. +...|+++.++-|++||+++..++.- |+++.+.||.-.+|+.+|..++.++
T Consensus 504 kIleGKLFPMKALGYfaVVTGrG---nssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResi 580 (980)
T KOG0447|consen 504 QIIEGKLFPMKALGYFAVVTGKG---NSSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESV 580 (980)
T ss_pred HHHhcCccchhhcceeEEEecCC---CcchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHH
Confidence 89999999998 99999886332 45679999999999999997655432 5999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012651 143 PSITSLINKSIEELESEMD 161 (459)
Q Consensus 143 P~l~~~i~~~l~~~~~eL~ 161 (459)
-+-.+.....-=..+.|.+
T Consensus 581 EqQaDaFkAtrFNLEtEWK 599 (980)
T KOG0447|consen 581 EQQADSFKATRFNLETEWK 599 (980)
T ss_pred HHHHHHHHHhhhhhhhhhh
Confidence 6655555544444445543
No 7
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=98.43 E-value=0.00028 Score=75.72 Aligned_cols=401 Identities=19% Similarity=0.151 Sum_probs=252.4
Q ss_pred cCCCCCChhhHHHHHHHHHHHHhcCC------CCCcHHH-----HHHHHhcCCCCCccceeccCCCccCCcchHHHhHhC
Q 012651 3 LAREVDPTGTVHLLSSVVKLYILCRK------LSSNLIL-----SYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEG 71 (459)
Q Consensus 3 v~~~~q~~~~~~~V~~lv~~Yi~~~~------~p~n~~i-----~~~a~~vDp~g~RTiGVlTK~D~~d~g~~~~~il~~ 71 (459)
++...+|+.+......+...|++.+. .+++... ...+++.++ |.||.+.++.|++...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--- 135 (546)
T COG0699 66 VPLSLEPEDIAQEDELLDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI--- 135 (546)
T ss_pred cccccCchhhHHHHHHHHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee---
Confidence 45667777777777788888888642 1111111 112455555 89999999888743222
Q ss_pred CccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 012651 72 RSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINK 151 (459)
Q Consensus 72 ~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~ 151 (459)
++.|++.+.|..+.++....+...+...|..+|..||.|.+....+|.+++...++..+..|+....|........
T Consensus 136 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (546)
T COG0699 136 ----LGNGDVLVVDALETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVI 211 (546)
T ss_pred ----eccccccccCchhHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhh
Confidence 7889999999999999999999999999999999999999999999999999999999999999998887766655
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCCcchhhhhHhhhHHHHhccCCccccCCchhHHH
Q 012651 152 SIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKK 231 (459)
Q Consensus 152 ~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~g~~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~ 231 (459)
.... .++.+ .+......|...++....| .++... ...|. .........+..
T Consensus 212 ~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~-------~l~~~~~~~~~~ 262 (546)
T COG0699 212 QLSQ------DLFEN----------EVLAVIQTLLKRLSELVRG-----ARIRLN-IILFS-------DLEEVSDSPVLL 262 (546)
T ss_pred cccc------cccch----------HHHHHHHHHHHHHHHHhcc-----chhhhh-hcccc-------hHHHhhhhhhHH
Confidence 5443 33322 1355555666655643443 222222 00010 001122233344
Q ss_pred HhhhhcCCCCCCCCChhHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhcchhcccCchhHHHHHHHHHHHHHHHH
Q 012651 232 VVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERF 311 (459)
Q Consensus 232 ~i~~~~G~~p~~f~p~~~~~~li~~~i~~w~~pa~~~~~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~v~~~~~~~L~~~ 311 (459)
..-++.|..|..|.....+..++..++.....+...|...+...+..+....+. ......||.++..+...+.+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (546)
T COG0699 263 KELASKGERPSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKV 341 (546)
T ss_pred HHHcccCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHh
Confidence 445566666656666777778888887777777765555454444444222222 2356789999998888888776777
Q ss_pred HHHHHHHHHHHHHhhhcCCCH---HHhh--hchHHHHhh-----------CCC----CC----CC---------C-----
Q 012651 312 RDEGRKTVIRLVDMEASYLTV---EFFR--KLPQEVEKA-----------GNP----GN----SG---------N----- 353 (459)
Q Consensus 312 ~~~~~~~v~~li~~E~~~~~~---d~~~--~~~~~~~k~-----------~~~----~~----~~---------~----- 353 (459)
...+...+...++.+..|+++ ++.. .......+. ... .. .. .
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (546)
T COG0699 342 DSGLESGLLAIIDIEERYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDF 421 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchh
Confidence 777888888888878777753 1111 000000000 000 00 00 0
Q ss_pred ------------CC---C-Cc-------ccCC-C---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 012651 354 ------------TA---S-QA-------VDRY-S---DGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLL 406 (459)
Q Consensus 354 ------------~~---~-~~-------~~~~-~---~~~~~~i~~~l~aYy~ia~kr~~D~Vp~~I~~~Lv~~~~~~l~ 406 (459)
.. . .. .... . ......+...+.+| ......+.|.++..+...+.+.......
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (546)
T COG0699 422 SLYKFLNEFLELKKLDALLATLGEALRRLTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQ 500 (546)
T ss_pred hHHHHHHHHhhhccchhhhccchHHHHHhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 0000 0 01123457889999 9999999999999998888655555444
Q ss_pred HHHHHHHhhhcHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHHHH
Q 012651 407 NHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARD 450 (459)
Q Consensus 407 ~~l~~~L~~~~~~~~~~Ll~E~~~i~~~R~~L~~~~~~L~~A~~ 450 (459)
......++.. .....+..+.+.+...+..+.+..+.+..+..
T Consensus 501 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 501 KQRLKRLYLE--QLEDELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444331 44667777778888888888888887777654
No 8
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=73.77 E-value=52 Score=33.43 Aligned_cols=217 Identities=15% Similarity=0.207 Sum_probs=105.4
Q ss_pred HHHHhccCCCCCCcc-----CCCChHHHHHHHHHHHHHHHHhh-c-----HH-HHHHHHHHHHHHHHHHHhcCCCCCC--
Q 012651 104 EREYFATSPDYGHLA-----GKMGSEYLAKLLSKHLESVIRSR-I-----PS-ITSLINKSIEELESEMDHLGRPIAV-- 169 (459)
Q Consensus 104 E~~fF~~~~~~~~~~-----~~~G~~~L~~~L~~~L~~~i~~~-L-----P~-l~~~i~~~l~~~~~eL~~lg~~~~~-- 169 (459)
...||+.++.|..+- .-.|..+|+.-|..++.+-|... | |. |-.++-.+.+........++...+.
T Consensus 29 ~~d~~r~Ns~~~km~~~y~r~~~g~~yLk~lL~p~v~~ii~~~~ldlE~dP~~Iy~~~i~~~e~~tG~~S~~~~~v~~e~ 108 (339)
T cd05131 29 IQDIVTGNPTVIKMVVSFNRGARGQNTLRQLLAPVVKEIIEDKSLIINTNPVEVYKAWVNQLETATGEASKLPYDVTTEQ 108 (339)
T ss_pred HHHHhccCcHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhcCcccCCcCCHHHHHHHHHHHHHHhhCCcccCCCCCCHHH
Confidence 467888888898862 34888899998888887755421 2 22 2222222222222222334433321
Q ss_pred ---Chh------HHHHHHHHHHHHHHHHHHHhhccCCCCcchhhhhHhhhHHHHhccCCccccCCchhHHHHhhh---hc
Q 012651 170 ---DAG------AQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSE---AD 237 (459)
Q Consensus 170 ---~~~------~~~~~l~~~~~~f~~~~~~~i~G~~~g~~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~---~~ 237 (459)
+++ .+...|.++++.|...+...++-- +. .++++++..+.....+.|- .+.+++..++-. .+
T Consensus 109 Ai~~pev~~~~~~~l~~L~~~~~~fl~~I~~sv~~~-P~--~lR~ick~i~~~~~~kFP~---~~~~~~~~~VG~fiflR 182 (339)
T cd05131 109 ALLHPEVRAKLESSIQVLRSVTDKVLGSIMSSLDLI-PY--GMRYIAKVLKNSLHEKFPD---ATEDELLKIVGNLLYYR 182 (339)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH--HHHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHH
Confidence 111 111235666667766666655532 21 2455555444433333331 122233322210 01
Q ss_pred CCCCCCCCChhHHHHHHHHH-HhhhhchHHHHHHHHHHHHHHHHHHHhcchhcccCchhHHHHHHHHHHHHHHHHHHHHH
Q 012651 238 GYQPHLIAPEQGYRRLIEGS-LSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGR 316 (459)
Q Consensus 238 G~~p~~f~p~~~~~~li~~~-i~~w~~pa~~~~~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~v~~~~~~~L~~~~~~~~ 316 (459)
=..|..++|+ .|. ++... -......+...+..+.++++ ++... ..|+. ++.-..-+..++.+......
T Consensus 183 fi~PAIvsPe-~f~-ii~~~~~~~~~~~~rrnL~~iaKvLq----~lan~-~~F~~----~e~~m~pLN~fi~~~~~~~~ 251 (339)
T cd05131 183 YMNPAIVAPD-GFD-IIDMTAGGQIHSDQRRNLGSVAKVLQ----HAASN-KLFEG----ENDHLSSMNSYLSQTYQKFR 251 (339)
T ss_pred HccchhcCch-hcC-ccccccCCCCCHHHHhhHHHHHHHHH----HHHCC-CCCCC----cChHHHhHHHHHHHHHHHHH
Confidence 1236666665 232 11100 01112223344555544444 33321 23432 12223467888888888888
Q ss_pred HHHHHHHHhhhc--CCCHHHhhh
Q 012651 317 KTVIRLVDMEAS--YLTVEFFRK 337 (459)
Q Consensus 317 ~~v~~li~~E~~--~~~~d~~~~ 337 (459)
..+..+++.+.. +++.+-|..
T Consensus 252 ~fl~~l~~V~d~e~~~~~d~Y~d 274 (339)
T cd05131 252 KFFQAACDVPEPEEKFNVDEYSD 274 (339)
T ss_pred HHHHHHhcCCCHHHHcChhHHHH
Confidence 899988886543 455555543
No 9
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=68.86 E-value=2.5 Score=37.38 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=13.0
Q ss_pred CCccceeccCCCccC
Q 012651 46 GERTFGVLTKLDLMD 60 (459)
Q Consensus 46 g~RTiGVlTK~D~~d 60 (459)
..+.||||||.|+..
T Consensus 89 ~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 89 NKPVIGVITKIDLPS 103 (143)
T ss_pred CCCEEEEEECccCcc
Confidence 367999999999993
No 10
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=66.41 E-value=6 Score=34.20 Aligned_cols=13 Identities=46% Similarity=0.787 Sum_probs=11.6
Q ss_pred ccceeccCCCccC
Q 012651 48 RTFGVLTKLDLMD 60 (459)
Q Consensus 48 RTiGVlTK~D~~d 60 (459)
-+|||+||.|+..
T Consensus 92 ~vIgvVTK~DLae 104 (148)
T COG4917 92 KVIGVVTKADLAE 104 (148)
T ss_pred ceEEEEecccccc
Confidence 3999999999994
No 11
>COG0218 Predicted GTPase [General function prediction only]
Probab=65.63 E-value=43 Score=31.26 Aligned_cols=54 Identities=20% Similarity=0.135 Sum_probs=38.3
Q ss_pred ChhhHHHHHHHHHHHHhcCC-------------CCCcHHHHHHHHhcCCCCCccceeccCCCccCCcc
Q 012651 9 PTGTVHLLSSVVKLYILCRK-------------LSSNLILSYKLIERTVAGERTFGVLTKLDLMDKGT 63 (459)
Q Consensus 9 ~~~~~~~V~~lv~~Yi~~~~-------------~p~n~~i~~~a~~vDp~g~RTiGVlTK~D~~d~g~ 63 (459)
|.+..+.+.+|+..|++.-. .|...+. .+..-....|-.++=|+||+|.+..+.
T Consensus 86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEEEccccCChhH
Confidence 56788999999999999841 1222222 223334456888999999999998764
No 12
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=62.62 E-value=21 Score=39.56 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=101.6
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCC-------CCcHHHHHHHHhcCCCCCccceeccCCCccCCcchHHHhHhCCccccCC
Q 012651 6 EVDPTGTVHLLSSVVKLYILCRKL-------SSNLILSYKLIERTVAGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 78 (459)
Q Consensus 6 ~~q~~~~~~~V~~lv~~Yi~~~~~-------p~n~~i~~~a~~vDp~g~RTiGVlTK~D~~d~g~~~~~il~~~~~~l~l 78 (459)
..+++++...|++++.+|.+..+. .++...+......++.+-++ +|.++.|.++ +. .+....+-.+++..
T Consensus 292 ~~~lP~l~~~i~~~~~~~~~el~~~g~~~~~~~~~~~ll~~i~~~~~~~~~-~v~g~~~~~~-~~-elsggari~~~F~~ 368 (657)
T KOG0446|consen 292 RDQLPELKTKINKLLEKYQDELNRIGAVDVDLANSAALLAIIREDPRGLRT-GVIGKLDLVP-TK-ALSGGARINYPFHG 368 (657)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhcccCCccchhhHHHHHHHHHHHHHHH-hhcccccccc-hh-cccchhhhhhhhhh
Confidence 357888999999999999887431 11222222345556788888 9999999996 43 23333334578888
Q ss_pred CEEEEEcCChhhhhccccHHHHHHHHHHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 012651 79 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 158 (459)
Q Consensus 79 G~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~ 158 (459)
+|..+.++-+.+ ...+..+-+.... -++ ++..+-+....+-..|++..-+.|.+.-.+++-.+-.++...++.+-.
T Consensus 369 ~f~~~i~~i~~~--~~~~~~~i~~~i~-~~~-G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~ 444 (657)
T KOG0446|consen 369 GFPGVIKKLPPD--RKLLGQNIEKLVS-EAS-GIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIR 444 (657)
T ss_pred ccchhhhcCCcc--hhhhHHHHHHHHH-hcc-CCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999888887765 3344333333222 122 221223346677777777777777777778888888888888888888
Q ss_pred --HHHhcCCCC
Q 012651 159 --EMDHLGRPI 167 (459)
Q Consensus 159 --eL~~lg~~~ 167 (459)
++.+||.-.
T Consensus 445 ~~~l~rfp~l~ 455 (657)
T KOG0446|consen 445 ATELKRFPVLY 455 (657)
T ss_pred hHHHHHhHHHH
Confidence 688888543
No 13
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=53.88 E-value=13 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=21.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHH
Q 012651 422 GQLLDEDPAMMERRLQCAKRLELYKAA 448 (459)
Q Consensus 422 ~~Ll~E~~~i~~~R~~L~~~~~~L~~A 448 (459)
..|++|-.....+|++|+.+++.|+..
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888888999999999999998864
No 14
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=51.98 E-value=15 Score=31.39 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.1
Q ss_pred CCCCCChhhHHHHHHHHHHHHhc
Q 012651 4 AREVDPTGTVHLLSSVVKLYILC 26 (459)
Q Consensus 4 ~~~~q~~~~~~~V~~lv~~Yi~~ 26 (459)
+.+.++..+.++|=+|.|+||+.
T Consensus 35 ~~~~ss~~LR~QILdLSkrYVKa 57 (138)
T PF15027_consen 35 PRHQSSAELREQILDLSKRYVKA 57 (138)
T ss_pred CCccChHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999994
No 15
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=43.94 E-value=3.4e+02 Score=27.06 Aligned_cols=48 Identities=8% Similarity=0.019 Sum_probs=32.2
Q ss_pred cCCchhHHHHhhhhcCCCCCCCCChhHHHHHHHHHHhhhhchHHHHHH
Q 012651 223 HLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASAD 270 (459)
Q Consensus 223 ~~~~~~i~~~i~~~~G~~p~~f~p~~~~~~li~~~i~~w~~pa~~~~~ 270 (459)
.++.++++.+|.+..+..|+...+..+.-.-.......|+.-|..|+.
T Consensus 179 ~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~ 226 (335)
T PF08429_consen 179 RLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLS 226 (335)
T ss_pred CCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999998766655433333323323344567889999998887
No 16
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=43.14 E-value=25 Score=30.90 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHhcCC-----CCC-----cHHHHHHHHhcCCCCCccceeccCC
Q 012651 18 SVVKLYILCRK-----LSS-----NLILSYKLIERTVAGERTFGVLTKL 56 (459)
Q Consensus 18 ~lv~~Yi~~~~-----~p~-----n~~i~~~a~~vDp~g~RTiGVlTK~ 56 (459)
+++.+|+.+.. +++ +.......+..++.+.|+|+|+||+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 89999995432 111 2344455789999999999999995
No 17
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=41.30 E-value=4.1e+02 Score=27.24 Aligned_cols=216 Identities=14% Similarity=0.181 Sum_probs=102.1
Q ss_pred HHHHhccCCCCCCcc----C-CCChHHHHHHHHHHHHHHHHh-hc-----HH-HHHHHHHHHHHHHHHHHhcCCCCCC--
Q 012651 104 EREYFATSPDYGHLA----G-KMGSEYLAKLLSKHLESVIRS-RI-----PS-ITSLINKSIEELESEMDHLGRPIAV-- 169 (459)
Q Consensus 104 E~~fF~~~~~~~~~~----~-~~G~~~L~~~L~~~L~~~i~~-~L-----P~-l~~~i~~~l~~~~~eL~~lg~~~~~-- 169 (459)
..++++.++.|..+- . -.|..+|+.-|..++.+-|.. .| |. |=.++-.+.+...-+...+|...+.
T Consensus 29 ~~dllr~Ns~~~km~~~y~r~~~g~~yLk~vL~p~I~~iie~~dLdlE~dP~~Iy~~~in~~E~~tG~~S~~~~~v~~e~ 108 (360)
T cd05133 29 IQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQ 108 (360)
T ss_pred HHHHhccCcHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCCCHHH
Confidence 567888888898873 2 388899888888777775532 12 31 1111111112222222334432221
Q ss_pred ---Chh------HHHHHHHHHHHHHHHHHHHhhccCCCCcchhhhhHhhhHHHHhccCCccccCCchhHHHHhhh---hc
Q 012651 170 ---DAG------AQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSE---AD 237 (459)
Q Consensus 170 ---~~~------~~~~~l~~~~~~f~~~~~~~i~G~~~g~~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~---~~ 237 (459)
+++ .+...|.+++++|-..+.+.++-- +-| ++++.+..+.....+.|- .+.+++-.++-. .+
T Consensus 109 A~~~peV~~~~~~~l~~Lr~i~~~fl~~I~~S~~~~-P~~--iR~ick~i~~~~~~kFP~---~~~~~i~~~vG~fiflR 182 (360)
T cd05133 109 ALSHEEVRTRLDASIRNMRTVTDKFLSAIVSSVDKI-PYG--MRFIAKVLKDSLHEKFPD---AGEDELLKIVGNLLYYR 182 (360)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhC-CHH--HHHHHHHHHHHHHHHCCC---CchhhHHHHHHHHHHHH
Confidence 111 111235666777766666655422 222 444544433333333331 222333322211 01
Q ss_pred CCCCCCCCChhHHHHHHHHHH-hhhhchHHHHHHHHHHHHHHHHHHHhcchhcccCchhHHHHHHHHHHHHHHHHHHHHH
Q 012651 238 GYQPHLIAPEQGYRRLIEGSL-SYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGR 316 (459)
Q Consensus 238 G~~p~~f~p~~~~~~li~~~i-~~w~~pa~~~~~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~v~~~~~~~L~~~~~~~~ 316 (459)
=..|....|+. |- ++.... ......+...+-.+.++++ ++... ..|+. ++.-...+..++.+......
T Consensus 183 fi~PAIvsPe~-~~-ii~~~~~~~~~~~~rrnL~~iaKvLQ----~lan~-~~f~~----~e~~m~pLN~fI~~~~~~~~ 251 (360)
T cd05133 183 YMNPAIVAPDA-FD-IIDLSAGGQLTTDQRRNLGSIAKMLQ----HAASN-KMFLG----DNAHLSIINEYLSQSYQKFR 251 (360)
T ss_pred hccccccCchh-cC-ccccccCCCCCHHHHhhHHHHHHHHH----HHHcC-CCCCC----CccHHHHHHHHHHHHHHHHH
Confidence 12367777762 32 211110 1223334455555544444 43331 23431 11122357788888888888
Q ss_pred HHHHHHHHhhhc--CCCHHHhh
Q 012651 317 KTVIRLVDMEAS--YLTVEFFR 336 (459)
Q Consensus 317 ~~v~~li~~E~~--~~~~d~~~ 336 (459)
+.+..+++.+.. +++.|-|.
T Consensus 252 ~fl~~~~~V~d~ee~~~~dey~ 273 (360)
T cd05133 252 RFFQSACEVPELQDKFNVDEYS 273 (360)
T ss_pred HHHHHhCCCCCHHHhcChhHHH
Confidence 888888776643 45554444
No 18
>PF15296 Codanin-1_C: Codanin-1 C-terminus
Probab=37.49 E-value=68 Score=27.48 Aligned_cols=52 Identities=12% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHH
Q 012651 100 ARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSR-IPSITSLINKSIEE 155 (459)
Q Consensus 100 a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~-LP~l~~~i~~~l~~ 155 (459)
..+-|++||.++|. .-|.-++.-.+|...--..||+.. ||..+..+...+++
T Consensus 68 Q~qLeeaFfh~Qp~----SlRRtVeFV~ERv~sn~VK~i~~~ll~~~~~~a~~~l~~ 120 (121)
T PF15296_consen 68 QLQLEEAFFHSQPA----SLRRTVEFVSERVASNCVKHIKQTLLLPAVKAADAQLQE 120 (121)
T ss_pred HHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 45789999999872 135667777777777777787776 67777777766653
No 19
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=36.32 E-value=26 Score=33.71 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=47.9
Q ss_pred HHHhccCCCCCCccCCCChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 012651 105 REYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEM 160 (459)
Q Consensus 105 ~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL 160 (459)
..|+..|+-|.++.-..|...|-..|..+|.+...+-+|.|++.+-..-......|
T Consensus 13 ~~Fled~~~i~~I~~d~Gfd~l~~~lk~mlkkin~~liP~Lk~~ll~~s~~vt~rl 68 (249)
T PF04583_consen 13 SQFLEDHALIMSIATDLGFDVLESALKSMLKKINTKLIPALKRMLLSTSRRVTVRL 68 (249)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 46999999899999999999999999999999999999999988866555555444
No 20
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=34.19 E-value=32 Score=29.95 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=32.4
Q ss_pred CccceeccCCCccCCcc---hHHHhHhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccC
Q 012651 47 ERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 111 (459)
Q Consensus 47 ~RTiGVlTK~D~~d~g~---~~~~il~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~ 111 (459)
+||+++| |||-+..|- ..++++. .-|+.++..+. -.+|.++| .+|+..|
T Consensus 1 e~Tl~lI-KPda~~~~~~~~~I~~~i~------~~Gf~I~~~k~-----~~lt~~~a----~~~Y~~~ 52 (135)
T cd04414 1 QLTLALI-KPDAVAHPLALEAVRQLIL------SNGFTIVRKKE-----LRWTTEDA----ERFYAEH 52 (135)
T ss_pred CeEEEEE-CchHHhCCchHHHHHHHHH------HCCCEEEEeee-----ecCCHHHH----HHHHHHh
Confidence 5899998 899998752 2344332 35888888876 34565554 4467665
No 21
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.03 E-value=1.7e+02 Score=24.95 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=44.2
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCCcc
Q 012651 138 IRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGD 201 (459)
Q Consensus 138 i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~g~~ 201 (459)
|+...+.++..++++++.++.+++.|-. +..++-+-+..-...++.++.+.|.+|+
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~lek--------q~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLEK--------QEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5668889999999999999999988852 2335777788888888888888776553
No 22
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=32.50 E-value=70 Score=21.85 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHhhcHH-HHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012651 137 VIRSRIPS-ITSLINKSIEELESEMDHLGRPIAVD 170 (459)
Q Consensus 137 ~i~~~LP~-l~~~i~~~l~~~~~eL~~lg~~~~~~ 170 (459)
||-..||. |+...+..|.-.+.||.+++...+..
T Consensus 2 ~IleELP~PiqQsAkqmlnILQEELssy~~E~~~~ 36 (44)
T PF13080_consen 2 HILEELPTPIQQSAKQMLNILQEELSSYPQEQPQH 36 (44)
T ss_pred chHhhcCchHHHHHHHHHHHHHHHHHhchhhccCh
Confidence 46677885 66778888999999999998776544
No 23
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=31.18 E-value=8e+02 Score=28.64 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=92.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCC-CChhHHHHHHHHH----HHHHHHHHHHhh
Q 012651 119 GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIA-VDAGAQLYTILEL----CRAFDRIFKEHL 193 (459)
Q Consensus 119 ~~~G~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~-~~~~~~~~~l~~~----~~~f~~~~~~~i 193 (459)
-..|.+.|+.++-..|.+-+..+. .+...+..........+..|=+-.+ -..+.....+-.+ -..|...++..+
T Consensus 703 ~~~~ae~lv~~~v~~ltde~~ps~-~li~tv~~l~~~r~~dvs~L~pi~~~lerd~V~~~~p~~~~l~~~~~~~~~~~~~ 781 (957)
T KOG1895|consen 703 CPAGAETLVPRLVVTLTDELPPST-DLIQTVKKLYETRLKDVSALLPILPGLERDEVLQLLPQLLKLPPKVVKLAFRRLL 781 (957)
T ss_pred ccccCccchhhheeeccccCCCCh-HHHHHHHHHHHHhhhhHHHHHhhcCCCCHHHHHHhhhHhhhcchHHHHHHHHHHh
Confidence 467888888888888877776333 4556666666666666655432221 1111211112222 235666666667
Q ss_pred ccCCCCcchhhhhHh-hhHHHHhccCCccccCCchhHHHHhhhhcCCCCCCCCChhHHHHHHHHHHhhhhchHHHHHHHH
Q 012651 194 DGGRPGGDRIYGVFD-NQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAV 272 (459)
Q Consensus 194 ~G~~~g~~ri~~~f~-~~f~~~~~~~~~~~~~~~~~i~~~i~~~~G~~p~~f~p~~~~~~li~~~i~~w~~pa~~~~~~V 272 (459)
.|....|. .-++. ...-.+++.+.+..+...+.+-.+......- -..|.+. ++..-+ .++-+|+.+-.-++..|
T Consensus 782 ~~~~~~~~--l~~l~p~e~li~~H~i~~~~d~~~~~~~~a~n~cf~~-~~~f~~~-~~~~~l-~~l~~~~nlp~lf~rtv 856 (957)
T KOG1895|consen 782 TGSSLSGR--LPVLDPSEVLIALHAIDPLKDVRGKLATDALNLCFES-RNLFTQQ-VLAQAL-NQLVKWENLPLLFMRTV 856 (957)
T ss_pred hcccccCC--CCccCcHHHHHHHHhcccccCchHHHHHHHHHHHHhh-hhcccHH-HHHHHH-HHHHhccCCchhhHHHH
Confidence 66543221 11111 0111223332111112222222222211111 1334333 444322 35556766654333333
Q ss_pred HHHHHHHHHHHhcchhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012651 273 HFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVD 324 (459)
Q Consensus 273 ~~~l~~~v~~~~~~~~~~~~fp~L~~~v~~~~~~~L~~~~~~~~~~v~~li~ 324 (459)
. ..+..||++...|.+++..++++.--+--.+.+.+++
T Consensus 857 --------~------q~~~~fp~l~~fV~e~Lsrlvekkiwk~~~~w~gf~k 894 (957)
T KOG1895|consen 857 --------I------QALPKFPKLSLFVLEILSRLVEKKIWKFPKRWEGFPK 894 (957)
T ss_pred --------H------hhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2456899999999999999988766555555555544
No 24
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=29.79 E-value=54 Score=27.39 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=13.1
Q ss_pred CCCccceeccCCCccCCc
Q 012651 45 AGERTFGVLTKLDLMDKG 62 (459)
Q Consensus 45 ~g~RTiGVlTK~D~~d~g 62 (459)
.+...|.|+||.|++...
T Consensus 103 ~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 103 RGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred cCCeEEEEEEccccCChh
Confidence 466678888888887643
No 25
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=29.17 E-value=4.3e+02 Score=23.85 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=44.9
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHH--Hhc----chhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012651 253 LIEGSLSYFRGPAEASADAVHFVLKELVRK--SIG----ETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVD 324 (459)
Q Consensus 253 li~~~i~~w~~pa~~~~~~V~~~l~~~v~~--~~~----~~~~~~~fp~L~~~v~~~~~~~L~~~~~~~~~~v~~li~ 324 (459)
-++++...|++.-..|...+... ..++.+ ++. ....++.||.|+..+..-....++.......+.+..+-+
T Consensus 9 ~~~~~~~~W~~~~~~~~~~l~sl-~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l~~ 85 (168)
T PF15011_consen 9 KVEEQMEKWDSALSRCLPLLSSL-ANLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLEELQK 85 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889998888776665443 233221 111 112489999999988776666666666666666655533
No 26
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=28.49 E-value=46 Score=30.37 Aligned_cols=39 Identities=31% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHHhcCC-----CCCcHHHHH-HHHhcCCCCC--------ccceeccCCC
Q 012651 18 SVVKLYILCRK-----LSSNLILSY-KLIERTVAGE--------RTFGVLTKLD 57 (459)
Q Consensus 18 ~lv~~Yi~~~~-----~p~n~~i~~-~a~~vDp~g~--------RTiGVlTK~D 57 (459)
.-.+.+|.+++ +|+.-++|. |+..+||+.. =| ||+||.=
T Consensus 14 ~F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGT-GV~TkaI 66 (194)
T COG3963 14 SFFKGWIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGT-GVITKAI 66 (194)
T ss_pred HHHHHHhcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCc-cHhHHHH
Confidence 35788899987 588888876 5899998743 33 8888853
No 27
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=27.13 E-value=6.6e+02 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHhccCCCCCCcc----CC-CChHHHHHHHHHHHHHHHH
Q 012651 104 EREYFATSPDYGHLA----GK-MGSEYLAKLLSKHLESVIR 139 (459)
Q Consensus 104 E~~fF~~~~~~~~~~----~~-~G~~~L~~~L~~~L~~~i~ 139 (459)
...+|+.++.|..+- .+ .|-.+|+..|..++.+-|.
T Consensus 28 ~~~l~R~Ns~~~k~l~~y~r~~~g~~yL~~~L~p~i~~ii~ 68 (331)
T cd05132 28 VGSLLRANTVVPRMITTYTRRGPGQSYLKSVLAPCLNDVVI 68 (331)
T ss_pred HHHHhcCCchHHHHHHHHHcCcccHHHHHHHHHHHHHHHHc
Confidence 567899888888763 33 6999999999888877544
No 28
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=26.72 E-value=37 Score=35.14 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=32.8
Q ss_pred hcCCCCCcc----------------ceeccCCCccCCcc--hHHHhHhCCccccCCCEEEEEcCC
Q 012651 41 ERTVAGERT----------------FGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRS 87 (459)
Q Consensus 41 ~vDp~g~RT----------------iGVlTK~D~~d~g~--~~~~il~~~~~~l~lG~~~v~nr~ 87 (459)
.-||-|.|+ |-||+|+||++.+. .|+.+|.-+ ...+.||.-.|.+
T Consensus 223 ARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSke--yPTiAfHAsi~ns 285 (572)
T KOG2423|consen 223 ARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE--YPTIAFHASINNS 285 (572)
T ss_pred ccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhh--CcceeeehhhcCc
Confidence 448999885 68999999999764 389998754 3345667655555
No 29
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=26.65 E-value=3.2e+02 Score=24.35 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=43.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012651 133 HLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP 198 (459)
Q Consensus 133 ~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~ 198 (459)
-+..-+++..|.|-..+..........+..|++ +.+ .|+-+++......+.+.+.|.-.
T Consensus 44 e~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~p------eak-~Fv~~li~~~~~l~~~~~~G~~~ 102 (154)
T PF05823_consen 44 EMIAALKEKSPSLYEKAEKLRDKLKKKIDKLSP------EAK-AFVKELIAKARSLYAQYSAGEKP 102 (154)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHHHTTTT--H------HHH-HHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCH------HHH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 345567889999999999999999999999963 444 36888888888888888888743
No 30
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=25.26 E-value=54 Score=28.38 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=31.0
Q ss_pred CccceeccCCCccCCcchHHHhHhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccC
Q 012651 47 ERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 111 (459)
Q Consensus 47 ~RTiGVlTK~D~~d~g~~~~~il~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~ 111 (459)
+||+++| |||-+..-.+.++.+. +-|+.++..+. -.+|.++|.+ |+..|
T Consensus 1 e~Tl~iI-KPda~~~~g~Il~~i~------~~Gf~I~~~k~-----~~lt~~~a~~----~y~~~ 49 (132)
T cd04418 1 ERTLAII-KPDAVHKAEEIEDIIL------ESGFTIVQKRK-----LQLSPEQCSD----FYAEH 49 (132)
T ss_pred CeEEEEE-CcHHHhhHHHHHHHHH------HCCCEEEEeee-----ecCCHHHHHH----HHHHh
Confidence 5899988 8999976223455444 35888888876 3355444433 56554
No 31
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=24.22 E-value=74 Score=25.17 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=12.9
Q ss_pred hCCccccCCCEEEEE
Q 012651 70 EGRSYRLQHPWVGIV 84 (459)
Q Consensus 70 ~~~~~~l~lG~~~v~ 84 (459)
.++.|+.+.|||+|.
T Consensus 64 erkIY~tg~GYfivt 78 (80)
T PF10264_consen 64 ERKIYHTGEGYFIVT 78 (80)
T ss_pred cCceeeCCCceEeeC
Confidence 577899999999984
No 32
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=22.08 E-value=1.4e+02 Score=26.53 Aligned_cols=52 Identities=23% Similarity=0.167 Sum_probs=32.3
Q ss_pred ChhhHHHHHHHHHHHHhcCC--------C-CCc----HHHHHHHHhcCCCCCccceeccCCCccCC
Q 012651 9 PTGTVHLLSSVVKLYILCRK--------L-SSN----LILSYKLIERTVAGERTFGVLTKLDLMDK 61 (459)
Q Consensus 9 ~~~~~~~V~~lv~~Yi~~~~--------~-p~n----~~i~~~a~~vDp~g~RTiGVlTK~D~~d~ 61 (459)
+.........++..|+++.. . +++ ... ...+..+..|...|.|+||+|+++.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 80 SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence 33445677788888987631 0 111 111 1134445568889999999999864
No 33
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=21.37 E-value=2.4e+02 Score=20.95 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHH-HHhhHHH-HHHHHHHHHHH
Q 012651 373 NVSSYVGMVSET-LRTTIPK-AIVYCQVREAK 402 (459)
Q Consensus 373 ~l~aYy~ia~kr-~~D~Vp~-~I~~~Lv~~~~ 402 (459)
.|.|||+++... +.|.+.| ++.--=++.+.
T Consensus 28 AmNaYYr~Vv~tlvqDqltKNa~vl~RiqHLd 59 (68)
T PF09628_consen 28 AMNAYYRSVVSTLVQDQLTKNAVVLKRIQHLD 59 (68)
T ss_dssp HHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 588999976554 5677765 44333333333
No 34
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=21.14 E-value=97 Score=26.78 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=32.3
Q ss_pred CccceeccCCCccCCcc--hHHHhHhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccC
Q 012651 47 ERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 111 (459)
Q Consensus 47 ~RTiGVlTK~D~~d~g~--~~~~il~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~ 111 (459)
+||+++| |||-+..|. +.++.+. ..|+.++..+. -..|.++| .+|+..|
T Consensus 2 e~Tl~iI-KPd~~~~~~~g~Il~~i~------~~Gf~I~~~k~-----~~ls~~~a----~~fy~~~ 52 (134)
T PRK00668 2 ERTFSII-KPDAVQRGLIGEIISRFE------KKGLKIVALKM-----MQLSRELA----EGHYAEH 52 (134)
T ss_pred ceEEEEE-CchHhhcCcHHHHHHHHH------HcCCEEEEeee-----ecCCHHHH----HHHHHHh
Confidence 5899998 899996553 3455444 35888888876 24565554 4466655
No 35
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=20.62 E-value=71 Score=27.63 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=30.5
Q ss_pred CccceeccCCCccCCcchHHHhHhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccC
Q 012651 47 ERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 111 (459)
Q Consensus 47 ~RTiGVlTK~D~~d~g~~~~~il~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~ 111 (459)
+||+.+| |||-+..-.+.++.+. .-|+.++..+. -..|.++| ++|+..|
T Consensus 1 erTl~iI-KPdav~~~g~Il~~i~------~~Gf~I~~~k~-----~~lt~~~a----~~~y~~~ 49 (131)
T cd04415 1 EKTLALI-KPDAYSKIGKIIQIIE------DAGFTITKAKM-----TKLSRKEA----QDFYAEH 49 (131)
T ss_pred CeEEEEE-CcHHHHhHHHHHHHHH------HCCCEEEEeee-----ecCCHHHH----HHHHHHh
Confidence 5899988 8999875222455444 35888877765 23454443 3466665
No 36
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=20.55 E-value=89 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=31.9
Q ss_pred CccceeccCCCccCCcc--hHHHhHhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccC
Q 012651 47 ERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 111 (459)
Q Consensus 47 ~RTiGVlTK~D~~d~g~--~~~~il~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~ 111 (459)
+||+++| |||-+..|. +.++.+. ..|+.++..+. -.+|.++|. +|+..|
T Consensus 1 e~tl~iI-KPd~~~~~~~g~Il~~i~------~~Gf~I~~~k~-----~~lt~~~a~----~~Y~~~ 51 (133)
T cd00595 1 ERTLALI-KPDAVAEGLLGEIIMRIE------DAGFEIVAMKE-----LHLTEEQAE----EFYVEH 51 (133)
T ss_pred CcEEEEE-CchHHhcCcHHHHHHHHH------HcCCEEEEeee-----ecCCHHHHH----HHHHHh
Confidence 5899998 899998653 2455444 35888888876 335555542 366554
No 37
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=20.46 E-value=1.7e+02 Score=22.16 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHHhccCCCCCCc
Q 012651 95 IDMIVARRKEREYFATSPDYGHL 117 (459)
Q Consensus 95 ~s~~~a~~~E~~fF~~~~~~~~~ 117 (459)
-+-++.++.-+.||+..+..+++
T Consensus 34 ~s~eeQr~~re~ff~~~~~l~~i 56 (66)
T PF10907_consen 34 ASSEEQRAHREKFFGGDKDLRDI 56 (66)
T ss_pred CChHHHHHHHHHHcCCCCCCCCC
Confidence 45566666667899998655555
No 38
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=20.44 E-value=1.1e+02 Score=26.65 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=32.5
Q ss_pred CCCccceeccCCCccCCcc--hHHHhHhCCccccCCCEEEEEcCChhhhhccccHHHHHHHHHHHhccC
Q 012651 45 AGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 111 (459)
Q Consensus 45 ~g~RTiGVlTK~D~~d~g~--~~~~il~~~~~~l~lG~~~v~nr~~~d~~~~~s~~~a~~~E~~fF~~~ 111 (459)
..+||+++| |||-+..|. +.++.+.. -|+.++..+. -..|.++| ++|+..|
T Consensus 2 ~~e~Tl~iI-KPdav~~~~~g~Il~~i~~------~Gf~I~~~k~-----~~lt~~~a----~~~Y~~~ 54 (139)
T PRK14545 2 AGNRTFTMI-KPDAVENGHIGGILDMITA------AGFRIVAMKL-----TQLTVADA----ETFYAVH 54 (139)
T ss_pred CcceEEEEE-CchhhhcCcHHHHHHHHHH------CCCEEEEeee-----ecCCHHHH----HHHHHHh
Confidence 468999998 899997653 24555443 4888887765 23555454 3466554
No 39
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=20.33 E-value=1.3e+02 Score=25.51 Aligned_cols=54 Identities=20% Similarity=0.083 Sum_probs=30.6
Q ss_pred ChhhHHHHHHHHHHHHhcCC------------CCCcHHHHHHHHhcCCCCCccceeccCCCccCCc
Q 012651 9 PTGTVHLLSSVVKLYILCRK------------LSSNLILSYKLIERTVAGERTFGVLTKLDLMDKG 62 (459)
Q Consensus 9 ~~~~~~~V~~lv~~Yi~~~~------------~p~n~~i~~~a~~vDp~g~RTiGVlTK~D~~d~g 62 (459)
|.+..+....+...|++... .+....-....+..+..+...+.|+||+|++.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 33456678888999998641 0111111112233344456677888998887654
No 40
>PRK03355 glycerol-3-phosphate acyltransferase; Validated
Probab=20.00 E-value=6e+02 Score=29.03 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhcHHHHhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012651 403 LSLLNHFYTQIGRKEAKQLGQLLDEDPAMMERRLQCAKRLELYKAARDEIDSVS 456 (459)
Q Consensus 403 ~~l~~~l~~~L~~~~~~~~~~Ll~E~~~i~~~R~~L~~~~~~L~~A~~~L~~i~ 456 (459)
+.+++.++++..+. -.=..+++.+|+++.+|.....++..+..-.+.+..+.
T Consensus 722 E~~sk~lf~na~~~--l~~~g~l~~~~~l~~~r~~~~~el~~~~~~~~~~~~~~ 773 (783)
T PRK03355 722 ESVSTLLFATARQL--ARDQGLLEPAPDLAERRVAFRAELRGILRDFDYVERIA 773 (783)
T ss_pred hhhCHHHHHHHHHH--HHHCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555431 12244669999999999999999999988888877654
Done!