BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012652
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/482 (32%), Positives = 249/482 (51%), Gaps = 41/482 (8%)
Query: 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLG-EQIRL 62
PH+++ P QGH+ PL + ++ L GF +TFVN+EYNHKR++KS K + G
Sbjct: 9 PHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNF 68
Query: 63 VSIPDGMEPWEERTDPGKLIEKVLQVMPGKLE----ELIEEINGRDD-EKIDCFISDGFM 117
SIPDG+ P E D + + + Q + EL+ +N + + C +SD M
Sbjct: 69 ESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCM 128
Query: 118 GWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGTPIRKQMIQLAPNMLE 177
++++ AE+ +L + ++S A S+ ++ ++ GII P + + L LE
Sbjct: 129 SFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGII-----PFKDES-YLTNGCLE 182
Query: 178 MNTEEFFWT------RLGDIT--TQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEP 229
+ W RL DI + I+ + I + N+ ELE
Sbjct: 183 TKVD---WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES 239
Query: 230 GAFN----MIPELLPVGPLLA-------SNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIY 278
N IP + P+GPL + ++L + + W ED+ CL WL+ ++P SV+Y
Sbjct: 240 DVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 279 VAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIG 338
V FGS TV+ Q E A GL C + FLW++RPD+ + ++ F +A RG +
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIAS 359
Query: 339 WAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLK 398
W PQ +VL+HPSI FL+HCGWNST E + G+P LCWP+F DQ + +IC+ W++G++
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 399 LDKDESGIITGEEISNKLVQVL-GD--QNFKARALELKEITMSSVREGGSSYKTFQNFLE 455
+D + + EE++ + +V+ GD + K +A+ELK+ + R GG SY ++
Sbjct: 420 IDTN----VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIK 475
Query: 456 WV 457
V
Sbjct: 476 DV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 139/486 (28%), Positives = 223/486 (45%), Gaps = 69/486 (14%)
Query: 3 SPHILVFSTPAQGHVIPLLEFSQCLAK-HGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIR 61
+PH+ + +P GH+IPL+EF++ L HG VTFV + EG ++
Sbjct: 6 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAG----------EGPPSKAQRTV 55
Query: 62 LVSIPDGME----PWEERTD--PGKLIEKVLQVMPGKLEELIEEI------NGRDDEK-- 107
L S+P + P + TD IE + + + + ++ GR
Sbjct: 56 LDSLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALV 115
Query: 108 IDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGTPIRKQ 167
+D F +D F +VA + + + + + A ++ +PKL D + + +
Sbjct: 116 VDLFGTDAF-----DVAVEFHVPPYIFYPTTANVLSFFLHLPKL--DETVSCEFRELTEP 168
Query: 168 MIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYEL 227
+ + P + + ++F L +K + K + + K K A+ N+ +EL
Sbjct: 169 L--MLPGCVPVAGKDF----LDPAQDRKDDAYKWL----LHNTKRYKEAEGILVNTFFEL 218
Query: 228 EPGAFNMI-------PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVA 280
EP A + P + PVGPL+ +G E+S CLKWLD Q SV+YV+
Sbjct: 219 EPNAIKALQEPGLDKPPVYPVGPLV---NIGKQEAK-QTEESECLKWLDNQPLGSVLYVS 274
Query: 281 FGSHTVLDHNQFQELALGLEICNRPFLWVVRP------------DITTDANDVYPRGFQE 328
FGS L Q ELALGL + FLWV+R TD P GF E
Sbjct: 275 FGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE 334
Query: 329 RVATRGQMIG-WAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNES 387
R RG +I WAPQ +VL+HPS FL+HCGWNST+E V +GIP + WP + +Q +N
Sbjct: 335 RTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 394
Query: 388 YICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKA---RALELKEITMSSVREGG 444
+ + + L+ + G++ EE++ + ++ + K + ELKE +++ G
Sbjct: 395 LLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDG 454
Query: 445 SSYKTF 450
+S K
Sbjct: 455 TSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 209/462 (45%), Gaps = 29/462 (6%)
Query: 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVS 64
H+ V + P H PLL + +A +VTF +L I+ +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFL-PNIKYYN 73
Query: 65 IPDGM-EPWEERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEV 123
+ DG+ + + +P + I ++ M + +I+E + I C ++D F + ++
Sbjct: 74 VHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADL 133
Query: 124 AEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGTPIRKQM--IQLAPNMLEMNTE 181
AE+M + +WT+ S+ + + D I + G+ + I + P E+
Sbjct: 134 AEEMHAKWVPLWTAGPHSL-----LTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKAS 188
Query: 182 EFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPELLPV 241
+ + DI T ++ + + +A VA F +E + LL V
Sbjct: 189 DLPEGVIKDIDVPFAT---MLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNV 245
Query: 242 GPL-LASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLE 300
GP L + + S H CL+WLDQ + SV+Y++FGS ++ LA LE
Sbjct: 246 GPFNLTTPQRKVSDEH------GCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLE 299
Query: 301 ICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGW 360
C PF+W R D + P+GF ER T+G+++ WAPQ +L H S+ FL+H GW
Sbjct: 300 ECGFPFIWSFR----GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGW 355
Query: 361 NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL 420
NS +E + G+P + P+F DQ LN + ++G+ +D +G++T E I L +
Sbjct: 356 NSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD---NGVLTKESIKKALELTM 412
Query: 421 GDQN---FKARALELKEITMSSVREGGSSYKTFQNFLEWVKT 459
+ + + ++LKE +V + G+S F ++ V +
Sbjct: 413 SSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 214/475 (45%), Gaps = 52/475 (10%)
Query: 2 SSPHILVFSTPAQGHVIPLLEFSQCLAK---HGFRVTFVNSEYNHKRVMKSLEGKNYLGE 58
++PH+ V + P H PLL + LA H F S+ N S+ + +
Sbjct: 6 TNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSM---HTMQC 62
Query: 59 QIRLVSIPDGM-EPWEERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM 117
I+ I DG+ E + P + IE + P + + + C ++D F+
Sbjct: 63 NIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFI 122
Query: 118 GWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGTPIRK-QMIQLAPNML 176
++ ++A +M + WT+ S+++ I ++ + I +G R+ +++ P M
Sbjct: 123 WFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREK--IGVSGIQGREDELLNFIPGMS 180
Query: 177 EMNTEEF-----------FWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTY 225
++ + ++R+ Q + +F S + D + TY
Sbjct: 181 KVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTY 240
Query: 226 ELEPGAFNMI--PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGS 283
L G FN+I P ++P N+ G CL+WL +++P SV+Y++FG+
Sbjct: 241 -LNIGPFNLITPPPVVP-----------NTTG--------CLQWLKERKPTSVVYISFGT 280
Query: 284 HTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVY-PRGFQERVATRGQMIGWAPQ 342
T + L+ LE PF+W +R D V+ P GF E+ G ++ WAPQ
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIWSLR-----DKARVHLPEGFLEKTRGYGMVVPWAPQ 335
Query: 343 QRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKD 402
VL+H ++ F++HCGWNS E V+ G+P +C P+F DQ LN + D+ ++G+++
Sbjct: 336 AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI--- 392
Query: 403 ESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457
E G+ T + + Q+L + K L+ + ++ R G + +NF+ V
Sbjct: 393 EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/466 (27%), Positives = 203/466 (43%), Gaps = 52/466 (11%)
Query: 6 ILVFSTPAQGHVIPLLEFSQCLAKHG-------FRVTFVNSEYNHKRVMKSLEGKNYLGE 58
++ P GH+ LEF++ L H F + F + + L +
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ----P 67
Query: 59 QIRLVSIPDGMEPWEER-TDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM 117
QI+L+ +P+ P +E P I L+ + ++ I+ I K+ + D F
Sbjct: 68 QIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN---KVVGLVLDFFC 124
Query: 118 GWSMEVAEKMKLRRAVIWTSCAASVASIFC-----IPKLIDDGIIDSNGTPIRKQMIQLA 172
++V + + + TS ++ + I ++ DD D I Q+
Sbjct: 125 VSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQVP 184
Query: 173 PNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQ-FCNSTYELEPGA 231
N+L + F G I K+ + R K + V F S+ +
Sbjct: 185 SNVL---PDACFNKDGGYIAYYKLAER-------FRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 232 FNMIPELLPVGPLL----ASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTV- 286
IP + VGPLL N + A H LKWLD+Q KSV+++ FGS V
Sbjct: 235 DEKIPPIYAVGPLLDLKGQPNPKLDQAQH-----DLILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 287 LDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQE--RVATRGQMIGWAPQQR 344
+Q +E+ALGL+ FLW + V+P GF E + +G + GWAPQ
Sbjct: 290 FGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEWMELEGKGMICGWAPQVE 344
Query: 345 VLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE- 403
VL+H +I F+SHCGWNS +E + G+P L WP + +Q LN + W VGL L D
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 404 --SGIITGEEISNKLVQVLG-DQNFKARALELKEITMSSVREGGSS 446
S ++ EEI L ++ D + E+KE++ ++V +GGSS
Sbjct: 405 KGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 129/466 (27%), Positives = 203/466 (43%), Gaps = 52/466 (11%)
Query: 6 ILVFSTPAQGHVIPLLEFSQCLAKHG-------FRVTFVNSEYNHKRVMKSLEGKNYLGE 58
++ P GH+ LEF++ L H F + F + + L +
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ----P 67
Query: 59 QIRLVSIPDGMEPWEER-TDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM 117
QI+L+ +P+ P +E P I L+ + ++ I+ I K+ + D F
Sbjct: 68 QIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN---KVVGLVLDFFC 124
Query: 118 GWSMEVAEKMKLRRAVIWTSCAASVASIFC-----IPKLIDDGIIDSNGTPIRKQMIQLA 172
++V + + + TS ++ + I ++ DD D I Q+
Sbjct: 125 VSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQVP 184
Query: 173 PNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQ-FCNSTYELEPGA 231
N+L + F G I K+ + R K + V F S+ +
Sbjct: 185 SNVL---PDACFNKDGGYIAYYKLAER-------FRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 232 FNMIPELLPVGPLL----ASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTV- 286
IP + VGPLL N + A H LKWLD+Q KSV+++ FGS V
Sbjct: 235 DEKIPPIYAVGPLLDLKGQPNPKLDQAQH-----DLILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 287 LDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQE--RVATRGQMIGWAPQQR 344
+Q +E+ALGL+ FLW + V+P GF E + +G + GWAPQ
Sbjct: 290 FGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEWMELEGKGMICGWAPQVE 344
Query: 345 VLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE- 403
VL+H +I F+SHCGWNS +E + G+P L WP + +Q LN + W VGL L D
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 404 --SGIITGEEISNKLVQVLG-DQNFKARALELKEITMSSVREGGSS 446
S ++ EEI L ++ D + E+KE++ ++V +GGSS
Sbjct: 405 KGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSS 450
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 339 WAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLK 398
W PQ +L+ S F++H G STME +SN +P + P +Q +N I ++ +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRH 368
Query: 399 LDKDESGIITGEEISNKLVQVLGDQNFKARALELKE 434
+ +D+ +T E++ ++ V D R +++
Sbjct: 369 IPRDQ---VTAEKLREAVLAVASDPGVAERLAAVRQ 401
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 335 QMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWK 394
++ W PQ +L HP F++H G N E + +GIP + P F DQ N ++
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAH-XKARG 129
Query: 395 VGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEI 435
+++D + + ++ N L +V+ D ++K +L I
Sbjct: 130 AAVRVDFNTX---SSTDLLNALKRVINDPSYKENVXKLSRI 167
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 339 WAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLK 398
W PQ +L + F++H G + EG++ P + P VDQF N + + V K
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL-GVARK 346
Query: 399 LDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGS 445
L +E+ T + + + ++ D R L+ I +EGG+
Sbjct: 347 LATEEA---TADLLRETALALVDDPEVARR---LRRIQAEMAQEGGT 387
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFV 37
HI +FS A GHV P LE + L G RVT+
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYA 41
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 320 DVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF 379
D+ P G R + +GW P +L + + H G + M + GIP L P
Sbjct: 274 DISPLGTLPRNV---RAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDP 328
Query: 380 VDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLV-QVLGDQNFKARALELKE 434
DQF + + + + G+ L + T +++ L+ +++GD++ + A E++E
Sbjct: 329 RDQFQHTAREA-VSRRGIGL------VSTSDKVDADLLRRLIGDESLRTAAREVRE 377
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 353 CFLSHC--GWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLD-KDESGIITG 409
C L C G + GIP L P + DQF Y ++ G + DE
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQF---DYARNLAAAGAGICLPDEQAQSDH 343
Query: 410 EEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQN 452
E+ ++ + VLGD F A A++L + ++++ + +T +N
Sbjct: 344 EQFTDSIATVLGDTGFAAAAIKLSD-EITAMPHPAALVRTLEN 385
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 353 CFLSHC--GWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLD-KDESGIITG 409
C L C G + GIP L P + DQF Y ++ G + DE
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQF---DYARNLAAAGAGICLPDEQAQSDH 343
Query: 410 EEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQN 452
E+ ++ + VLGD F A A++L + ++++ + +T +N
Sbjct: 344 EQFTDSIATVLGDTGFAAAAIKLSD-EITAMPHPAALVRTLEN 385
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 339 WAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQF 383
W PQ +L H + + H G +T+ + G+P L +P+ D F
Sbjct: 299 WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 266 KWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDAN-DVYP 323
+W + P S Y G+ T +D N + +L +G +R L+ RP IT +A +VYP
Sbjct: 394 QWAARSMPPSFGYSMKGA-TDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYP 451
>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure
Length = 959
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 266 KWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDAN-DVYP 323
+W + P S Y G+ T +D N + +L +G +R L+ RP IT +A +VYP
Sbjct: 394 QWAARSMPPSFGYSMKGA-TDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYP 451
>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|A Chain A, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 957
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 266 KWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDAN-DVYP 323
+W + P S Y G+ T +D N + +L +G +R L+ RP IT +A +VYP
Sbjct: 394 QWAARSMPPSFGYSMKGA-TDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYP 451
>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 967
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 266 KWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDAN-DVYP 323
+W + P S Y G+ T +D N + +L +G +R L+ RP IT +A +VYP
Sbjct: 394 QWAARSMPPSFGYSMKGA-TDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYP 451
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS 39
HIL + GHV P L LA+ G R+T+V +
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTT 40
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 337 IGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 377
+GW P V P+ + H G ST+ G+S G+P L P
Sbjct: 268 VGWTPLDVV--APTCDLLVHHAGGVSTLTGLSAGVPQLLIP 306
>pdb|2UX6|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Oxidized Form, Ph 7.5
pdb|2UX7|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Reduced Form, Ph 7.5
pdb|2UXF|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Oxidized Form, Ph 5.5
pdb|2UXG|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Reduced Form, Ph 5.5
Length = 122
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 86 LQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASI 145
L+V PG I G + E I I DG + ++ E K+ T A V +
Sbjct: 23 LKVAPGDTVTFIPTDKGHNVETIKGMIPDGAEAFKSKINENYKV------TFTAPGVYGV 76
Query: 146 FCIPKLIDDGIIDSNGTPIRKQMIQLAPN 174
C P G++ P + ++ A N
Sbjct: 77 KCTPHPFMVGVVQVGDAPANLEAVKGAKN 105
>pdb|2IUE|A Chain A, Pactolus I-Domain: Functional Switching Of The Rossmann
Fold
Length = 212
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 152 IDDGIIDSNGTPIRKQMIQLAPNMLEMNTEEFF 184
+DDG+ S G P + ++QLA + E N + F
Sbjct: 137 LDDGMYRSRGEPDYQSVVQLASKLAENNIQPIF 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,288,876
Number of Sequences: 62578
Number of extensions: 599124
Number of successful extensions: 1339
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 29
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)