Query 012652
Match_columns 459
No_of_seqs 134 out of 1282
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 1.4E-66 3.1E-71 507.9 43.8 433 3-458 6-448 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 1E-64 2.2E-69 493.3 42.1 432 3-459 7-450 (451)
3 PLN02207 UDP-glycosyltransfera 100.0 3.4E-64 7.3E-69 488.9 43.1 441 1-458 1-464 (468)
4 PLN02152 indole-3-acetate beta 100.0 9.9E-64 2.1E-68 484.7 42.9 433 1-458 1-455 (455)
5 PLN02173 UDP-glucosyl transfer 100.0 5.9E-64 1.3E-68 485.5 41.2 425 1-458 1-447 (449)
6 PLN02555 limonoid glucosyltran 100.0 1.1E-63 2.3E-68 487.7 42.6 444 3-458 7-468 (480)
7 PLN02210 UDP-glucosyl transfer 100.0 4.5E-63 9.8E-68 483.7 41.2 428 3-458 8-454 (456)
8 PLN02554 UDP-glycosyltransfera 100.0 1E-62 2.2E-67 486.2 41.3 438 3-458 2-477 (481)
9 PLN02992 coniferyl-alcohol glu 100.0 3E-62 6.6E-67 476.0 41.6 425 3-458 5-468 (481)
10 PLN00164 glucosyltransferase; 100.0 6.3E-62 1.4E-66 478.6 42.3 437 1-458 1-472 (480)
11 PLN02448 UDP-glycosyltransfera 100.0 7.8E-62 1.7E-66 478.4 41.8 430 3-459 10-457 (459)
12 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.4E-61 3.1E-66 474.4 42.2 437 3-458 9-470 (477)
13 PLN03004 UDP-glycosyltransfera 100.0 1.4E-61 3E-66 469.2 38.8 431 1-448 1-450 (451)
14 PLN03007 UDP-glucosyltransfera 100.0 4.1E-61 8.9E-66 475.5 42.8 439 1-458 1-479 (482)
15 PLN02167 UDP-glycosyltransfera 100.0 5.8E-61 1.3E-65 473.1 40.2 443 1-458 1-471 (475)
16 PLN03015 UDP-glucosyl transfer 100.0 1.3E-60 2.7E-65 461.9 41.2 435 1-458 1-467 (470)
17 PLN02670 transferase, transfer 100.0 1.6E-60 3.4E-65 463.7 40.2 431 3-458 6-464 (472)
18 PLN02208 glycosyltransferase f 100.0 1.5E-60 3.2E-65 462.9 38.3 411 1-458 1-438 (442)
19 PLN02534 UDP-glycosyltransfera 100.0 6.7E-60 1.5E-64 461.5 40.4 438 1-458 5-485 (491)
20 PLN02764 glycosyltransferase f 100.0 1.1E-59 2.5E-64 453.9 40.9 415 3-458 5-444 (453)
21 PLN00414 glycosyltransferase f 100.0 2.2E-58 4.7E-63 448.3 38.2 412 1-458 1-439 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.9E-51 4.2E-56 407.1 34.3 391 3-439 20-449 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 8.5E-52 1.9E-56 417.2 8.4 377 5-439 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 4.2E-45 9.1E-50 357.2 33.8 378 10-456 2-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.4E-44 3.1E-49 355.1 28.3 378 4-456 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1.2E-42 2.6E-47 335.5 25.6 385 3-457 1-398 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.1E-42 8.9E-47 346.9 21.6 407 3-438 5-438 (496)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 5.9E-26 1.3E-30 216.0 25.2 305 4-419 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 7.7E-26 1.7E-30 215.9 25.8 319 4-431 2-335 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 7.7E-24 1.7E-28 200.9 24.4 308 5-426 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.2E-21 4.8E-26 182.9 25.3 323 4-439 1-338 (357)
32 PRK00726 murG undecaprenyldiph 99.9 7.9E-20 1.7E-24 176.8 25.8 340 4-456 2-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.1E-18 2.4E-23 168.5 24.9 322 5-431 1-333 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.8 2.6E-17 5.6E-22 159.6 22.9 351 3-455 5-384 (385)
35 TIGR01133 murG undecaprenyldip 99.8 6.7E-17 1.4E-21 155.9 23.6 322 4-438 1-334 (348)
36 PRK13609 diacylglycerol glucos 99.7 4.5E-16 9.8E-21 151.8 25.2 162 273-456 201-368 (380)
37 COG4671 Predicted glycosyl tra 99.7 1.4E-16 3.1E-21 143.0 18.6 330 3-421 9-364 (400)
38 TIGR03590 PseG pseudaminic aci 99.7 1.1E-15 2.4E-20 141.4 22.0 105 274-389 170-279 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 1.2E-14 2.5E-19 142.0 22.5 350 3-457 1-375 (380)
40 PRK13608 diacylglycerol glucos 99.6 1.1E-13 2.5E-18 134.9 24.9 163 272-456 200-368 (391)
41 PLN02605 monogalactosyldiacylg 99.6 8.2E-13 1.8E-17 128.7 25.1 112 332-457 265-379 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 2.8E-16 6E-21 134.5 -2.0 139 276-425 1-147 (167)
43 cd03814 GT1_like_2 This family 99.5 2.2E-11 4.8E-16 117.6 29.9 346 5-456 1-362 (364)
44 TIGR03492 conserved hypothetic 99.5 1.4E-11 3E-16 119.7 23.2 351 12-454 5-393 (396)
45 cd03818 GT1_ExpC_like This fam 99.4 4.7E-10 1E-14 110.1 30.8 88 331-428 280-372 (396)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 7.3E-10 1.6E-14 111.0 32.4 133 276-430 264-408 (465)
47 PF03033 Glyco_transf_28: Glyc 99.4 7.4E-13 1.6E-17 109.6 7.2 124 6-140 1-133 (139)
48 cd03823 GT1_ExpE7_like This fa 99.4 6.9E-10 1.5E-14 106.9 29.0 137 274-430 190-337 (359)
49 cd03794 GT1_wbuB_like This fam 99.4 3.5E-10 7.5E-15 110.1 25.1 345 5-431 1-374 (394)
50 cd03817 GT1_UGDG_like This fam 99.3 2.3E-09 5.1E-14 103.7 29.5 83 331-426 258-347 (374)
51 cd03801 GT1_YqgM_like This fam 99.3 3.1E-09 6.7E-14 102.2 29.7 343 5-455 1-371 (374)
52 cd03816 GT1_ALG1_like This fam 99.3 2.4E-09 5.3E-14 105.5 27.8 77 332-422 294-381 (415)
53 cd03808 GT1_cap1E_like This fa 99.3 5.7E-09 1.2E-13 100.2 29.6 320 5-430 1-337 (359)
54 COG3980 spsG Spore coat polysa 99.3 1.3E-10 2.7E-15 102.0 15.3 295 4-434 1-305 (318)
55 cd03800 GT1_Sucrose_synthase T 99.3 9.8E-09 2.1E-13 100.7 29.2 86 331-428 282-374 (398)
56 cd04962 GT1_like_5 This family 99.3 1E-08 2.2E-13 99.7 28.6 112 331-457 252-368 (371)
57 cd03825 GT1_wcfI_like This fam 99.2 9.5E-09 2.1E-13 99.5 27.5 113 330-457 242-362 (365)
58 cd03805 GT1_ALG2_like This fam 99.2 1.5E-08 3.3E-13 99.3 27.8 85 331-428 279-370 (392)
59 cd03820 GT1_amsD_like This fam 99.2 2E-08 4.3E-13 95.9 28.1 94 331-436 234-333 (348)
60 PRK05749 3-deoxy-D-manno-octul 99.2 1.3E-08 2.8E-13 100.9 27.2 78 343-430 314-396 (425)
61 cd03798 GT1_wlbH_like This fam 99.2 2.9E-08 6.2E-13 95.8 29.0 83 331-425 258-347 (377)
62 TIGR00236 wecB UDP-N-acetylglu 99.2 1.4E-09 3E-14 105.5 19.3 157 274-455 197-363 (365)
63 PF04007 DUF354: Protein of un 99.2 7.5E-09 1.6E-13 97.0 22.7 300 4-420 1-308 (335)
64 PRK10307 putative glycosyl tra 99.2 4.2E-08 9.2E-13 96.9 29.5 160 274-456 228-404 (412)
65 TIGR03449 mycothiol_MshA UDP-N 99.2 6.6E-08 1.4E-12 95.3 29.9 88 331-430 282-376 (405)
66 cd03795 GT1_like_4 This family 99.1 5.9E-08 1.3E-12 93.6 27.7 137 274-429 190-339 (357)
67 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 2.1E-09 4.5E-14 104.3 16.6 137 273-429 197-344 (363)
68 cd03821 GT1_Bme6_like This fam 99.1 8.2E-08 1.8E-12 92.8 27.6 87 331-431 261-354 (375)
69 cd03796 GT1_PIG-A_like This fa 99.1 2.5E-07 5.5E-12 90.9 29.0 79 331-423 249-334 (398)
70 cd03799 GT1_amsK_like This is 99.0 1.7E-07 3.6E-12 90.4 25.4 84 331-426 235-331 (355)
71 cd05844 GT1_like_7 Glycosyltra 99.0 2.3E-07 5.1E-12 89.9 25.9 86 331-428 244-342 (367)
72 cd03802 GT1_AviGT4_like This f 99.0 9.7E-08 2.1E-12 91.3 22.8 128 277-423 173-309 (335)
73 TIGR02472 sucr_P_syn_N sucrose 99.0 8.6E-07 1.9E-11 88.2 29.8 110 331-455 316-436 (439)
74 cd03822 GT1_ecORF704_like This 99.0 3E-07 6.5E-12 88.8 25.9 109 330-455 245-363 (366)
75 cd04955 GT1_like_6 This family 99.0 6.7E-07 1.5E-11 86.5 27.6 154 278-456 196-361 (363)
76 cd03811 GT1_WabH_like This fam 99.0 2.9E-07 6.3E-12 88.0 24.7 89 331-431 245-341 (353)
77 PLN02846 digalactosyldiacylgly 99.0 9E-07 1.9E-11 86.8 27.5 73 336-423 288-364 (462)
78 cd03807 GT1_WbnK_like This fam 99.0 2.7E-06 5.9E-11 81.7 31.0 107 332-455 251-362 (365)
79 cd03812 GT1_CapH_like This fam 98.9 1.2E-06 2.5E-11 84.7 27.8 88 331-431 248-340 (358)
80 PRK09922 UDP-D-galactose:(gluc 98.9 4.4E-07 9.6E-12 87.8 23.5 131 275-424 180-326 (359)
81 cd03819 GT1_WavL_like This fam 98.9 2.3E-06 4.9E-11 82.5 28.3 137 274-426 184-335 (355)
82 TIGR02468 sucrsPsyn_pln sucros 98.9 1.5E-06 3.3E-11 91.8 28.4 89 331-431 547-646 (1050)
83 PLN02275 transferase, transfer 98.9 1.2E-06 2.7E-11 85.1 25.8 75 332-420 286-371 (371)
84 cd03809 GT1_mtfB_like This fam 98.9 1.2E-06 2.6E-11 84.5 25.4 91 330-434 251-348 (365)
85 cd04951 GT1_WbdM_like This fam 98.9 3.5E-06 7.5E-11 81.3 27.9 107 331-455 244-356 (360)
86 TIGR03088 stp2 sugar transfera 98.9 2.3E-06 5E-11 83.3 26.5 110 332-456 255-369 (374)
87 cd03792 GT1_Trehalose_phosphor 98.8 3.1E-06 6.7E-11 82.4 26.2 110 331-457 251-369 (372)
88 TIGR02149 glgA_Coryne glycogen 98.8 6.3E-06 1.4E-10 80.6 28.5 138 275-428 201-358 (388)
89 PRK14089 ipid-A-disaccharide s 98.8 1.3E-06 2.7E-11 82.8 20.5 161 274-453 167-344 (347)
90 TIGR02470 sucr_synth sucrose s 98.8 3.8E-05 8.2E-10 79.7 32.7 88 331-430 618-721 (784)
91 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 2.3E-06 4.9E-11 82.6 22.2 133 274-425 201-341 (365)
92 COG1519 KdtA 3-deoxy-D-manno-o 98.7 2E-05 4.4E-10 74.3 27.0 308 12-435 57-399 (419)
93 PRK15427 colanic acid biosynth 98.7 1.4E-05 2.9E-10 78.7 27.4 112 331-457 278-403 (406)
94 cd03804 GT1_wbaZ_like This fam 98.7 8.5E-07 1.8E-11 85.6 18.7 135 277-431 197-336 (351)
95 PRK01021 lpxB lipid-A-disaccha 98.7 6.8E-06 1.5E-10 81.9 23.6 217 216-450 362-599 (608)
96 cd03806 GT1_ALG11_like This fa 98.6 5.6E-05 1.2E-09 74.6 26.8 81 331-424 304-394 (419)
97 TIGR03087 stp1 sugar transfera 98.6 1.8E-05 4E-10 77.7 22.4 108 331-455 279-392 (397)
98 PF02684 LpxB: Lipid-A-disacch 98.5 1.6E-05 3.5E-10 75.8 20.2 214 216-448 134-366 (373)
99 COG0381 WecB UDP-N-acetylgluco 98.5 5.7E-05 1.2E-09 70.8 22.6 157 274-455 204-370 (383)
100 PF02350 Epimerase_2: UDP-N-ac 98.5 8.2E-07 1.8E-11 84.8 10.7 139 272-430 178-326 (346)
101 PLN00142 sucrose synthase 98.5 0.00013 2.8E-09 75.9 26.9 88 332-431 642-745 (815)
102 PRK00654 glgA glycogen synthas 98.5 2.7E-05 5.9E-10 78.1 21.6 132 274-421 281-427 (466)
103 PRK15179 Vi polysaccharide bio 98.5 0.00058 1.3E-08 70.9 31.1 108 331-455 573-689 (694)
104 TIGR02095 glgA glycogen/starch 98.4 0.00058 1.3E-08 68.7 29.1 160 275-456 291-469 (473)
105 PLN02949 transferase, transfer 98.4 0.001 2.2E-08 66.2 29.4 80 331-422 334-422 (463)
106 cd03791 GT1_Glycogen_synthase_ 98.4 0.00033 7.1E-09 70.6 26.1 164 274-456 295-473 (476)
107 KOG3349 Predicted glycosyltran 98.3 2E-06 4.3E-11 68.3 6.8 118 275-401 4-134 (170)
108 PLN02501 digalactosyldiacylgly 98.3 0.00015 3.2E-09 73.4 20.6 76 334-424 603-683 (794)
109 cd04950 GT1_like_1 Glycosyltra 98.2 0.00054 1.2E-08 66.6 23.3 79 331-423 253-341 (373)
110 cd03813 GT1_like_3 This family 98.2 0.00032 6.8E-09 70.6 21.3 89 331-430 353-450 (475)
111 COG0763 LpxB Lipid A disacchar 98.1 0.0003 6.6E-09 65.8 18.3 219 216-458 137-380 (381)
112 TIGR02918 accessory Sec system 98.1 0.00068 1.5E-08 68.2 20.8 87 331-423 375-468 (500)
113 cd04946 GT1_AmsK_like This fam 98.1 0.00014 3.1E-09 71.6 15.7 111 332-454 289-406 (407)
114 PF00534 Glycos_transf_1: Glyc 98.0 5.1E-05 1.1E-09 64.9 10.8 90 330-431 71-167 (172)
115 PLN02316 synthase/transferase 98.0 0.018 3.9E-07 61.9 30.9 115 331-455 899-1029(1036)
116 cd01635 Glycosyltransferase_GT 98.0 0.0012 2.5E-08 58.8 18.6 49 331-381 160-216 (229)
117 PRK15484 lipopolysaccharide 1, 97.9 0.00074 1.6E-08 65.9 17.9 112 330-456 255-374 (380)
118 PRK10125 putative glycosyl tra 97.9 0.0048 1E-07 60.6 23.5 114 277-416 243-365 (405)
119 cd04949 GT1_gtfA_like This fam 97.9 0.00049 1.1E-08 66.9 16.6 86 331-425 260-348 (372)
120 COG1817 Uncharacterized protei 97.8 0.021 4.5E-07 52.0 23.6 106 12-140 8-116 (346)
121 COG5017 Uncharacterized conser 97.8 0.00018 3.9E-09 56.3 8.7 126 277-420 2-140 (161)
122 PRK10017 colanic acid biosynth 97.8 0.028 6.1E-07 55.2 26.1 173 266-457 226-422 (426)
123 PF13844 Glyco_transf_41: Glyc 97.7 0.00042 9.1E-09 67.7 12.3 142 273-429 283-437 (468)
124 PRK15490 Vi polysaccharide bio 97.7 0.033 7.2E-07 55.9 25.3 112 331-457 454-573 (578)
125 PRK14099 glycogen synthase; Pr 97.7 0.078 1.7E-06 53.4 28.5 41 1-41 1-47 (485)
126 TIGR02193 heptsyl_trn_I lipopo 97.6 0.017 3.8E-07 54.8 21.0 105 5-130 1-108 (319)
127 PF13692 Glyco_trans_1_4: Glyc 97.3 0.0013 2.9E-08 53.5 8.1 80 331-422 52-135 (135)
128 PF13477 Glyco_trans_4_2: Glyc 97.0 0.015 3.2E-07 47.5 12.0 103 5-136 1-107 (139)
129 PRK09814 beta-1,6-galactofuran 97.0 0.0023 4.9E-08 61.2 7.9 109 331-456 206-332 (333)
130 PHA01633 putative glycosyl tra 96.9 0.017 3.7E-07 54.6 12.2 85 330-422 199-307 (335)
131 KOG4626 O-linked N-acetylgluco 96.8 0.017 3.7E-07 57.2 11.9 151 272-439 756-918 (966)
132 PRK10916 ADP-heptose:LPS hepto 96.6 0.52 1.1E-05 45.3 21.0 103 4-133 1-106 (348)
133 PRK10422 lipopolysaccharide co 96.6 0.43 9.4E-06 45.9 20.4 106 3-133 5-113 (352)
134 TIGR02195 heptsyl_trn_II lipop 96.6 0.34 7.4E-06 46.3 19.4 102 5-133 1-105 (334)
135 PRK10964 ADP-heptose:LPS hepto 96.6 0.23 5.1E-06 47.1 18.1 103 4-127 1-106 (322)
136 TIGR02201 heptsyl_trn_III lipo 96.6 0.3 6.5E-06 46.9 18.8 105 5-133 1-108 (344)
137 cd03789 GT1_LPS_heptosyltransf 96.4 0.2 4.2E-06 46.5 16.1 102 5-133 1-105 (279)
138 PRK14098 glycogen synthase; Pr 96.4 0.059 1.3E-06 54.3 13.0 130 275-420 307-449 (489)
139 COG0859 RfaF ADP-heptose:LPS h 96.3 0.94 2E-05 43.2 20.3 106 3-134 1-108 (334)
140 PHA01630 putative group 1 glyc 96.2 0.18 4E-06 48.0 15.0 108 338-457 196-328 (331)
141 PF06258 Mito_fiss_Elm1: Mitoc 96.2 0.19 4.2E-06 47.1 14.4 39 341-380 221-259 (311)
142 PF13524 Glyco_trans_1_2: Glyc 96.1 0.066 1.4E-06 40.2 9.2 82 357-454 9-91 (92)
143 PF06722 DUF1205: Protein of u 95.9 0.012 2.6E-07 44.5 4.2 51 263-313 29-84 (97)
144 cd03788 GT1_TPS Trehalose-6-Ph 95.9 0.39 8.4E-06 48.1 16.2 101 337-457 346-459 (460)
145 KOG2941 Beta-1,4-mannosyltrans 95.5 2.1 4.5E-05 40.0 28.4 355 3-422 12-405 (444)
146 PF13579 Glyco_trans_4_4: Glyc 95.5 0.033 7.1E-07 46.3 6.0 98 18-136 5-104 (160)
147 PF12000 Glyco_trans_4_3: Gkyc 95.5 0.11 2.4E-06 43.8 8.9 96 29-137 1-97 (171)
148 COG3914 Spy Predicted O-linked 95.5 0.065 1.4E-06 52.9 8.5 104 272-383 427-542 (620)
149 PF01975 SurE: Survival protei 95.0 0.074 1.6E-06 46.2 6.5 42 4-46 1-42 (196)
150 TIGR02400 trehalose_OtsA alpha 95.0 0.16 3.5E-06 50.6 9.7 101 338-458 342-455 (456)
151 PRK02261 methylaspartate mutas 94.6 0.59 1.3E-05 38.0 10.6 43 1-43 1-43 (137)
152 PF13439 Glyco_transf_4: Glyco 93.9 0.35 7.6E-06 40.7 8.5 101 13-139 11-112 (177)
153 TIGR03713 acc_sec_asp1 accesso 93.5 2 4.3E-05 43.6 14.1 79 332-427 409-493 (519)
154 PLN02939 transferase, transfer 93.3 3.4 7.4E-05 44.5 15.7 91 331-429 836-942 (977)
155 TIGR02919 accessory Sec system 93.0 2.7 5.8E-05 41.6 13.8 135 274-436 283-426 (438)
156 PF08660 Alg14: Oligosaccharid 92.7 1.3 2.8E-05 37.6 9.7 115 9-136 3-129 (170)
157 COG0438 RfaG Glycosyltransfera 92.3 8.1 0.00018 36.0 16.1 88 332-431 257-351 (381)
158 cd02067 B12-binding B12 bindin 92.0 1.5 3.1E-05 34.7 8.8 105 5-132 1-106 (119)
159 PRK13932 stationary phase surv 91.3 3.4 7.3E-05 37.5 11.2 115 3-136 5-133 (257)
160 COG3660 Predicted nucleoside-d 90.8 12 0.00027 33.7 18.3 76 295-376 189-271 (329)
161 smart00851 MGS MGS-like domain 90.6 2.8 6.1E-05 31.2 8.6 80 20-133 2-90 (90)
162 PRK05986 cob(I)alamin adenolsy 90.4 4.7 0.0001 34.7 10.7 99 2-117 21-125 (191)
163 PF01075 Glyco_transf_9: Glyco 90.2 1.9 4E-05 39.1 8.8 94 273-376 104-208 (247)
164 PRK14501 putative bifunctional 89.5 4.1 8.8E-05 43.5 11.8 107 336-458 346-461 (726)
165 PF04464 Glyphos_transf: CDP-G 89.4 0.96 2.1E-05 43.9 6.7 112 331-454 251-368 (369)
166 PF02374 ArsA_ATPase: Anion-tr 89.0 1.1 2.4E-05 42.0 6.5 44 4-47 1-45 (305)
167 PRK13933 stationary phase surv 88.8 7.1 0.00015 35.4 11.1 114 4-136 1-129 (253)
168 cd01425 RPS2 Ribosomal protein 88.6 2.5 5.4E-05 36.7 7.9 117 16-140 41-162 (193)
169 PRK13934 stationary phase surv 88.5 6.9 0.00015 35.6 10.8 112 4-136 1-127 (266)
170 COG0496 SurE Predicted acid ph 88.5 2.3 5E-05 38.2 7.7 112 4-137 1-126 (252)
171 PLN03063 alpha,alpha-trehalose 88.3 2.8 6E-05 45.1 9.6 96 344-458 371-476 (797)
172 PF02142 MGS: MGS-like domain 88.3 0.93 2E-05 34.2 4.5 85 20-133 2-95 (95)
173 COG1618 Predicted nucleotide k 87.5 2.4 5.2E-05 35.2 6.5 57 3-68 5-61 (179)
174 PRK13935 stationary phase surv 87.4 8.7 0.00019 34.8 10.7 113 4-136 1-128 (253)
175 cd02070 corrinoid_protein_B12- 87.4 3.3 7.1E-05 36.2 8.0 105 3-133 82-189 (201)
176 KOG1387 Glycosyltransferase [C 87.3 27 0.00058 33.0 20.9 268 106-438 149-445 (465)
177 KOG1111 N-acetylglucosaminyltr 87.0 28 0.00061 33.0 19.3 45 330-376 250-301 (426)
178 TIGR00715 precor6x_red precorr 86.9 4.8 0.0001 36.6 9.0 92 4-135 1-99 (256)
179 COG0003 ArsA Predicted ATPase 86.5 9.5 0.00021 36.0 10.9 45 3-47 1-46 (322)
180 cd01424 MGS_CPS_II Methylglyox 86.5 8.9 0.00019 29.7 9.3 84 15-133 10-100 (110)
181 COG0052 RpsB Ribosomal protein 86.4 3.5 7.6E-05 36.6 7.4 36 106-141 155-192 (252)
182 PF02951 GSH-S_N: Prokaryotic 86.4 1.4 3E-05 34.8 4.5 39 4-42 1-42 (119)
183 PRK12342 hypothetical protein; 86.1 9.7 0.00021 34.6 10.4 40 92-137 100-145 (254)
184 PF02441 Flavoprotein: Flavopr 86.0 1.3 2.8E-05 35.7 4.4 45 4-49 1-45 (129)
185 cd01423 MGS_CPS_I_III Methylgl 85.1 8.7 0.00019 30.1 8.7 87 16-133 11-106 (116)
186 PF00731 AIRC: AIR carboxylase 84.7 8.7 0.00019 31.6 8.6 140 276-439 2-149 (150)
187 PRK08305 spoVFB dipicolinate s 84.7 1.8 3.9E-05 37.4 4.8 45 2-46 4-48 (196)
188 PRK00346 surE 5'(3')-nucleotid 84.1 6.6 0.00014 35.5 8.4 111 4-136 1-124 (250)
189 PF05159 Capsule_synth: Capsul 84.0 6.4 0.00014 36.2 8.6 80 291-377 142-225 (269)
190 PF07429 Glyco_transf_56: 4-al 83.8 25 0.00054 33.3 12.1 82 332-421 245-332 (360)
191 TIGR00087 surE 5'/3'-nucleotid 83.8 7.3 0.00016 35.2 8.5 113 4-136 1-128 (244)
192 TIGR00708 cobA cob(I)alamin ad 83.8 21 0.00046 30.2 10.8 96 4-117 6-107 (173)
193 TIGR02370 pyl_corrinoid methyl 83.5 7.1 0.00015 34.0 8.2 105 3-131 84-189 (197)
194 cd00561 CobA_CobO_BtuR ATP:cor 83.2 26 0.00056 29.3 11.6 97 5-118 4-106 (159)
195 COG2894 MinD Septum formation 82.8 12 0.00027 32.8 9.0 103 4-116 2-122 (272)
196 cd02071 MM_CoA_mut_B12_BD meth 82.7 16 0.00034 29.0 9.3 37 5-41 1-37 (122)
197 KOG0853 Glycosyltransferase [C 82.2 1.8 3.9E-05 42.9 4.3 62 362-431 381-442 (495)
198 PRK02797 4-alpha-L-fucosyltran 82.1 44 0.00095 31.2 13.3 80 332-419 206-291 (322)
199 COG1703 ArgK Putative periplas 81.9 12 0.00025 34.7 8.9 113 5-135 53-173 (323)
200 PF06925 MGDG_synth: Monogalac 81.8 2.6 5.6E-05 35.7 4.7 43 90-138 78-126 (169)
201 PRK13931 stationary phase surv 81.4 11 0.00025 34.3 8.8 100 18-136 14-129 (261)
202 PRK06849 hypothetical protein; 81.2 8.7 0.00019 37.5 8.8 38 1-42 1-39 (389)
203 PRK12311 rpsB 30S ribosomal pr 81.2 7.8 0.00017 36.5 7.9 36 106-141 151-188 (326)
204 TIGR02015 BchY chlorophyllide 81.1 12 0.00027 36.9 9.8 27 106-135 354-380 (422)
205 COG2910 Putative NADH-flavin r 81.0 2.1 4.6E-05 36.3 3.7 34 4-42 1-35 (211)
206 PRK05973 replicative DNA helic 80.9 12 0.00027 33.5 8.8 43 6-48 67-109 (237)
207 COG4370 Uncharacterized protei 80.0 2.8 6.1E-05 38.4 4.4 90 332-430 294-387 (412)
208 cd00550 ArsA_ATPase Oxyanion-t 79.8 13 0.00027 33.9 8.8 38 6-43 2-40 (254)
209 cd03793 GT1_Glycogen_synthase_ 79.2 5.1 0.00011 40.8 6.4 85 341-429 467-558 (590)
210 TIGR02398 gluc_glyc_Psyn gluco 78.7 78 0.0017 32.0 14.6 105 335-458 365-481 (487)
211 cd01980 Chlide_reductase_Y Chl 78.0 23 0.0005 35.0 10.6 27 106-135 349-375 (416)
212 PF04413 Glycos_transf_N: 3-De 78.0 9.4 0.0002 32.9 7.0 95 11-137 28-127 (186)
213 PF04127 DFP: DNA / pantothena 77.5 2.5 5.4E-05 36.4 3.2 40 2-41 2-53 (185)
214 PF02310 B12-binding: B12 bind 77.3 9.5 0.00021 29.9 6.5 42 5-46 2-43 (121)
215 PF00551 Formyl_trans_N: Formy 76.8 23 0.00051 30.3 9.1 106 4-137 1-110 (181)
216 PF00448 SRP54: SRP54-type pro 75.4 18 0.00039 31.4 8.1 38 6-43 4-41 (196)
217 PRK03359 putative electron tra 75.4 32 0.0007 31.3 9.9 40 92-137 103-148 (256)
218 PHA02542 41 41 helicase; Provi 75.4 16 0.00035 36.7 8.7 41 6-46 193-233 (473)
219 PRK01175 phosphoribosylformylg 75.3 23 0.00049 32.4 9.0 59 1-70 1-59 (261)
220 COG0859 RfaF ADP-heptose:LPS h 74.5 30 0.00066 32.9 10.2 100 4-138 176-280 (334)
221 COG1484 DnaC DNA replication p 74.4 6 0.00013 36.1 5.0 47 3-49 105-151 (254)
222 PRK08057 cobalt-precorrin-6x r 74.1 20 0.00044 32.5 8.3 92 3-135 2-99 (248)
223 PF06506 PrpR_N: Propionate ca 73.8 18 0.0004 30.7 7.7 110 15-139 17-154 (176)
224 cd01121 Sms Sms (bacterial rad 73.7 8.1 0.00017 37.4 6.0 42 6-47 85-126 (372)
225 PRK06029 3-octaprenyl-4-hydrox 73.6 6.8 0.00015 33.7 4.9 45 4-49 2-47 (185)
226 PRK13789 phosphoribosylamine-- 73.2 6.9 0.00015 38.8 5.5 38 1-43 1-39 (426)
227 PRK08506 replicative DNA helic 73.1 18 0.00039 36.4 8.5 42 6-47 195-236 (472)
228 PRK02155 ppnK NAD(+)/NADH kina 72.7 16 0.00035 34.0 7.6 57 345-423 60-120 (291)
229 cd01974 Nitrogenase_MoFe_beta 72.5 31 0.00067 34.3 10.0 27 106-135 376-402 (435)
230 PRK11823 DNA repair protein Ra 72.4 8.8 0.00019 38.2 6.1 42 6-47 83-124 (446)
231 TIGR03600 phage_DnaB phage rep 72.4 21 0.00045 35.3 8.8 42 6-47 197-239 (421)
232 PF12146 Hydrolase_4: Putative 72.2 8 0.00017 27.9 4.3 35 4-38 16-50 (79)
233 cd00532 MGS-like MGS-like doma 71.9 37 0.0008 26.3 8.4 85 16-133 10-104 (112)
234 PF07015 VirC1: VirC1 protein; 71.6 20 0.00044 31.9 7.4 43 6-48 4-47 (231)
235 TIGR02655 circ_KaiC circadian 71.4 27 0.00059 35.3 9.4 114 4-137 264-398 (484)
236 COG2185 Sbm Methylmalonyl-CoA 71.3 11 0.00024 30.6 5.3 42 1-42 10-51 (143)
237 cd00984 DnaB_C DnaB helicase C 71.1 27 0.00058 31.3 8.6 43 6-48 16-59 (242)
238 PRK06249 2-dehydropantoate 2-r 70.5 11 0.00023 35.7 6.0 43 1-49 3-45 (313)
239 PRK07313 phosphopantothenoylcy 70.5 7.1 0.00015 33.5 4.3 44 4-48 2-45 (182)
240 PRK14106 murD UDP-N-acetylmura 70.4 36 0.00079 33.9 10.1 34 3-41 5-38 (450)
241 COG0541 Ffh Signal recognition 70.3 39 0.00084 33.1 9.5 44 4-47 101-144 (451)
242 cd02069 methionine_synthase_B1 70.2 23 0.0005 31.3 7.6 39 3-41 88-126 (213)
243 PRK05595 replicative DNA helic 70.1 20 0.00044 35.7 8.1 42 6-47 204-246 (444)
244 KOG0202 Ca2+ transporting ATPa 70.0 60 0.0013 34.6 11.3 164 275-458 572-748 (972)
245 TIGR00416 sms DNA repair prote 69.2 15 0.00034 36.6 7.0 42 6-47 97-138 (454)
246 PF09314 DUF1972: Domain of un 69.2 74 0.0016 27.3 11.0 56 4-66 2-62 (185)
247 COG1066 Sms Predicted ATP-depe 69.0 4.9 0.00011 38.7 3.2 103 5-136 95-218 (456)
248 PRK06718 precorrin-2 dehydroge 69.0 79 0.0017 27.6 12.9 145 272-439 9-165 (202)
249 cd03466 Nitrogenase_NifN_2 Nit 68.9 42 0.00092 33.3 10.0 27 106-135 371-397 (429)
250 PRK05299 rpsB 30S ribosomal pr 68.6 28 0.0006 31.8 7.9 36 106-141 156-193 (258)
251 PRK05234 mgsA methylglyoxal sy 68.4 64 0.0014 26.4 10.2 98 3-135 4-113 (142)
252 PRK09620 hypothetical protein; 68.1 6.9 0.00015 35.0 3.9 40 1-40 1-52 (229)
253 TIGR01425 SRP54_euk signal rec 68.1 31 0.00066 34.1 8.6 40 5-44 102-141 (429)
254 TIGR01470 cysG_Nterm siroheme 67.9 84 0.0018 27.5 12.5 147 273-439 9-165 (205)
255 PRK01077 cobyrinic acid a,c-di 67.8 60 0.0013 32.5 10.9 39 1-39 1-40 (451)
256 PRK06988 putative formyltransf 67.7 42 0.00091 31.7 9.2 33 3-40 2-34 (312)
257 COG0552 FtsY Signal recognitio 66.9 51 0.0011 31.1 9.3 45 5-49 141-185 (340)
258 PRK10867 signal recognition pa 66.4 45 0.00098 33.0 9.5 42 5-46 102-144 (433)
259 PF08433 KTI12: Chromatin asso 66.4 31 0.00067 31.8 7.9 101 6-141 4-110 (270)
260 PRK08760 replicative DNA helic 66.3 19 0.00041 36.2 7.0 41 6-46 232-273 (476)
261 PRK14478 nitrogenase molybdenu 66.2 49 0.0011 33.3 9.9 25 106-133 392-416 (475)
262 PRK05647 purN phosphoribosylgl 66.0 85 0.0019 27.4 10.2 34 4-40 2-37 (200)
263 PRK01231 ppnK inorganic polyph 65.9 27 0.00058 32.6 7.5 55 347-423 61-119 (295)
264 cd07039 TPP_PYR_POX Pyrimidine 65.8 39 0.00084 28.4 7.8 28 351-378 64-97 (164)
265 PRK06321 replicative DNA helic 65.4 39 0.00085 34.0 9.0 42 6-47 229-271 (472)
266 TIGR00347 bioD dethiobiotin sy 65.0 45 0.00097 27.8 8.2 27 11-37 6-32 (166)
267 PRK07952 DNA replication prote 64.9 30 0.00064 31.3 7.3 42 5-46 101-142 (244)
268 COG3640 CooC CO dehydrogenase 64.8 70 0.0015 28.6 9.2 47 4-50 1-48 (255)
269 TIGR01286 nifK nitrogenase mol 64.6 54 0.0012 33.4 9.9 27 106-135 436-462 (515)
270 PRK09165 replicative DNA helic 64.5 32 0.0007 34.9 8.3 43 6-48 220-277 (497)
271 PF01210 NAD_Gly3P_dh_N: NAD-d 64.5 5.2 0.00011 33.3 2.3 32 5-41 1-32 (157)
272 PRK04885 ppnK inorganic polyph 64.4 11 0.00025 34.4 4.6 53 349-423 36-94 (265)
273 TIGR02852 spore_dpaB dipicolin 64.3 12 0.00027 32.1 4.6 40 5-44 2-41 (187)
274 TIGR00460 fmt methionyl-tRNA f 63.9 71 0.0015 30.1 10.0 31 4-39 1-31 (313)
275 PLN02470 acetolactate synthase 63.9 39 0.00084 35.1 9.0 92 280-377 2-109 (585)
276 PRK05632 phosphate acetyltrans 63.8 85 0.0018 33.4 11.6 102 5-139 4-117 (684)
277 TIGR00064 ftsY signal recognit 63.8 68 0.0015 29.6 9.7 37 6-42 75-111 (272)
278 PRK13234 nifH nitrogenase redu 63.8 14 0.0003 34.6 5.2 42 1-42 1-43 (295)
279 TIGR01011 rpsB_bact ribosomal 63.6 44 0.00096 29.8 8.1 36 106-141 154-191 (225)
280 TIGR02195 heptsyl_trn_II lipop 63.6 48 0.001 31.4 9.1 98 5-136 176-278 (334)
281 PF09001 DUF1890: Domain of un 63.5 10 0.00022 30.4 3.5 36 14-49 10-45 (139)
282 CHL00067 rps2 ribosomal protei 63.0 32 0.0007 30.7 7.1 36 106-141 160-197 (230)
283 PRK05920 aromatic acid decarbo 62.9 14 0.0003 32.3 4.7 45 3-48 3-47 (204)
284 cd01124 KaiC KaiC is a circadi 62.8 17 0.00036 31.0 5.3 42 6-47 2-43 (187)
285 PRK08006 replicative DNA helic 62.8 52 0.0011 33.1 9.3 42 6-47 227-269 (471)
286 TIGR00421 ubiX_pad polyprenyl 62.7 11 0.00024 32.3 4.0 42 6-48 2-43 (181)
287 PRK05579 bifunctional phosphop 62.3 15 0.00032 36.0 5.2 47 2-49 5-51 (399)
288 cd02037 MRP-like MRP (Multiple 62.3 33 0.00073 28.7 7.0 37 6-42 2-39 (169)
289 PRK00090 bioD dithiobiotin syn 62.3 82 0.0018 27.8 9.8 33 6-38 2-35 (222)
290 TIGR00959 ffh signal recogniti 61.8 61 0.0013 32.1 9.4 41 5-45 101-142 (428)
291 PRK07206 hypothetical protein; 61.6 40 0.00087 33.2 8.4 33 4-41 3-35 (416)
292 PRK14077 pnk inorganic polypho 61.6 13 0.00029 34.4 4.6 58 344-423 60-121 (287)
293 PF02571 CbiJ: Precorrin-6x re 61.4 41 0.00089 30.5 7.6 94 4-135 1-100 (249)
294 PRK14974 cell division protein 61.3 83 0.0018 30.0 9.9 38 5-42 142-179 (336)
295 PRK11889 flhF flagellar biosyn 61.2 77 0.0017 31.0 9.6 40 4-43 242-281 (436)
296 KOG0081 GTPase Rab27, small G 60.9 20 0.00044 29.5 4.8 47 93-139 109-166 (219)
297 TIGR03878 thermo_KaiC_2 KaiC d 60.9 51 0.0011 30.1 8.3 38 6-43 39-76 (259)
298 COG2109 BtuR ATP:corrinoid ade 60.8 1.1E+02 0.0024 26.4 10.5 98 6-118 31-133 (198)
299 TIGR01501 MthylAspMutase methy 60.7 89 0.0019 25.3 9.8 43 3-45 1-43 (134)
300 PRK08116 hypothetical protein; 60.2 84 0.0018 28.9 9.6 41 6-46 117-157 (268)
301 PF00318 Ribosomal_S2: Ribosom 59.7 59 0.0013 28.7 8.1 35 106-140 142-178 (211)
302 COG2874 FlaH Predicted ATPases 59.6 56 0.0012 28.8 7.6 99 6-119 31-135 (235)
303 PRK04328 hypothetical protein; 59.5 86 0.0019 28.4 9.5 44 4-47 24-67 (249)
304 PRK12475 thiamine/molybdopteri 59.3 42 0.00091 32.1 7.7 34 2-40 23-57 (338)
305 PRK05636 replicative DNA helic 59.3 25 0.00055 35.6 6.5 41 6-46 268-309 (505)
306 TIGR00521 coaBC_dfp phosphopan 59.1 17 0.00037 35.4 5.0 48 1-49 1-48 (390)
307 KOG0832 Mitochondrial/chloropl 59.0 10 0.00023 33.2 3.1 115 13-141 90-209 (251)
308 cd01965 Nitrogenase_MoFe_beta_ 58.6 51 0.0011 32.7 8.5 36 94-135 361-396 (428)
309 COG2099 CobK Precorrin-6x redu 58.5 30 0.00066 31.1 6.0 93 3-135 2-100 (257)
310 TIGR02700 flavo_MJ0208 archaeo 58.4 17 0.00038 32.6 4.7 44 6-49 2-47 (234)
311 cd01985 ETF The electron trans 58.3 74 0.0016 27.0 8.5 31 106-136 90-123 (181)
312 PRK07773 replicative DNA helic 57.9 48 0.0011 36.4 8.8 43 6-48 220-263 (886)
313 TIGR03499 FlhF flagellar biosy 57.8 84 0.0018 29.1 9.3 39 5-43 196-236 (282)
314 TIGR01285 nifN nitrogenase mol 57.6 86 0.0019 31.2 9.8 86 4-134 312-397 (432)
315 TIGR02699 archaeo_AfpA archaeo 57.4 19 0.00041 30.6 4.4 42 6-48 2-45 (174)
316 TIGR03880 KaiC_arch_3 KaiC dom 57.3 41 0.00088 29.8 6.9 45 5-49 18-62 (224)
317 PRK01911 ppnK inorganic polyph 57.2 18 0.00038 33.7 4.6 58 344-423 60-121 (292)
318 PRK09739 hypothetical protein; 57.0 28 0.00062 30.2 5.7 39 1-39 1-42 (199)
319 PRK06732 phosphopantothenate-- 56.9 14 0.00031 33.0 3.9 37 4-40 1-49 (229)
320 PF01075 Glyco_transf_9: Glyco 56.9 26 0.00057 31.5 5.7 99 3-137 105-211 (247)
321 TIGR02329 propionate_PrpR prop 56.7 56 0.0012 33.4 8.4 109 14-137 36-172 (526)
322 TIGR02113 coaC_strep phosphopa 56.6 14 0.0003 31.6 3.5 42 5-47 2-43 (177)
323 cd03115 SRP The signal recogni 56.6 72 0.0016 26.8 8.1 39 6-44 3-41 (173)
324 PRK02231 ppnK inorganic polyph 56.4 13 0.00029 34.1 3.6 58 342-421 36-97 (272)
325 PRK02649 ppnK inorganic polyph 56.3 17 0.00037 34.0 4.4 56 346-423 66-125 (305)
326 COG0287 TyrA Prephenate dehydr 56.1 1.3E+02 0.0028 27.9 10.0 42 3-49 3-44 (279)
327 PF07355 GRDB: Glycine/sarcosi 56.1 22 0.00048 33.6 5.0 45 87-134 63-117 (349)
328 PF04244 DPRP: Deoxyribodipyri 56.0 16 0.00034 32.5 3.9 26 16-41 47-72 (224)
329 PRK08840 replicative DNA helic 55.9 74 0.0016 31.9 9.0 42 6-47 220-262 (464)
330 cd07035 TPP_PYR_POX_like Pyrim 55.9 61 0.0013 26.6 7.4 28 351-378 60-93 (155)
331 PRK04539 ppnK inorganic polyph 55.5 21 0.00045 33.4 4.8 58 344-423 64-125 (296)
332 PRK13982 bifunctional SbtC-lik 55.4 15 0.00032 36.7 4.0 39 3-41 256-306 (475)
333 PRK14098 glycogen synthase; Pr 55.3 21 0.00045 36.1 5.2 39 3-41 5-49 (489)
334 cd03789 GT1_LPS_heptosyltransf 55.0 52 0.0011 30.3 7.5 99 6-137 124-226 (279)
335 COG0771 MurD UDP-N-acetylmuram 55.0 45 0.00098 33.1 7.2 36 3-43 7-42 (448)
336 TIGR01283 nifE nitrogenase mol 54.8 1.2E+02 0.0027 30.3 10.5 26 106-134 394-419 (456)
337 TIGR00665 DnaB replicative DNA 54.7 74 0.0016 31.6 8.9 42 6-47 198-240 (434)
338 PLN02929 NADH kinase 54.4 63 0.0014 30.2 7.6 98 288-423 32-138 (301)
339 PRK06719 precorrin-2 dehydroge 54.4 26 0.00057 29.2 4.8 34 2-40 12-45 (157)
340 PF02572 CobA_CobO_BtuR: ATP:c 54.3 58 0.0013 27.6 6.8 97 4-117 4-106 (172)
341 PRK06904 replicative DNA helic 54.2 71 0.0015 32.2 8.6 42 6-47 224-266 (472)
342 PRK07004 replicative DNA helic 54.0 69 0.0015 32.1 8.5 42 6-47 216-258 (460)
343 PRK08229 2-dehydropantoate 2-r 53.9 21 0.00047 34.0 4.9 41 3-48 2-42 (341)
344 PRK03378 ppnK inorganic polyph 53.7 22 0.00047 33.2 4.6 58 344-423 59-120 (292)
345 PRK14569 D-alanyl-alanine synt 53.5 27 0.00059 32.6 5.4 39 1-39 1-43 (296)
346 TIGR02201 heptsyl_trn_III lipo 53.4 1.9E+02 0.0041 27.5 11.3 86 18-136 200-287 (344)
347 TIGR01007 eps_fam capsular exo 53.1 1.5E+02 0.0033 25.6 15.0 41 3-43 16-58 (204)
348 COG1448 TyrB Aspartate/tyrosin 53.0 1.9E+02 0.004 28.0 10.4 82 348-444 252-333 (396)
349 PRK10916 ADP-heptose:LPS hepto 52.9 52 0.0011 31.5 7.3 102 5-136 182-288 (348)
350 cd01422 MGS Methylglyoxal synt 52.8 1.1E+02 0.0024 23.9 8.6 86 15-134 9-107 (115)
351 PRK12921 2-dehydropantoate 2-r 52.4 27 0.00059 32.6 5.2 40 4-48 1-40 (305)
352 COG1763 MobB Molybdopterin-gua 52.0 31 0.00068 28.9 4.8 37 4-40 2-39 (161)
353 PRK03372 ppnK inorganic polyph 52.0 24 0.00051 33.2 4.6 57 345-423 69-129 (306)
354 PF06564 YhjQ: YhjQ protein; 51.9 1.8E+02 0.004 26.2 10.5 36 5-40 3-39 (243)
355 PF01695 IstB_IS21: IstB-like 51.9 22 0.00049 30.3 4.1 45 3-47 47-91 (178)
356 cd01017 AdcA Metal binding pro 51.5 1.6E+02 0.0034 27.2 10.1 44 90-136 206-251 (282)
357 PRK11519 tyrosine kinase; Prov 51.4 3.4E+02 0.0073 29.1 13.9 117 3-135 525-667 (719)
358 cd01018 ZntC Metal binding pro 51.2 1.8E+02 0.0039 26.6 10.3 46 89-137 202-249 (266)
359 PF03808 Glyco_tran_WecB: Glyc 51.2 1.5E+02 0.0033 25.0 10.8 96 20-140 37-137 (172)
360 PRK12726 flagellar biosynthesi 51.0 1.2E+02 0.0026 29.6 9.1 39 6-44 209-247 (407)
361 PRK08155 acetolactate synthase 50.9 86 0.0019 32.4 9.0 90 280-377 3-109 (564)
362 PRK10416 signal recognition pa 50.9 1.4E+02 0.003 28.3 9.6 39 5-43 116-154 (318)
363 PF02585 PIG-L: GlcNAc-PI de-N 50.4 64 0.0014 25.5 6.4 21 19-39 13-33 (128)
364 cd01421 IMPCH Inosine monophos 50.4 1.1E+02 0.0024 26.3 7.9 39 17-66 10-48 (187)
365 cd01968 Nitrogenase_NifE_I Nit 50.3 1.2E+02 0.0026 29.8 9.5 26 106-134 355-380 (410)
366 cd03114 ArgK-like The function 49.6 1.4E+02 0.0031 24.4 10.5 36 6-41 2-37 (148)
367 PRK05748 replicative DNA helic 49.6 93 0.002 31.1 8.7 42 6-47 206-248 (448)
368 PF05693 Glycogen_syn: Glycoge 49.4 21 0.00046 36.5 4.0 89 340-435 461-565 (633)
369 PRK06522 2-dehydropantoate 2-r 49.4 25 0.00054 32.8 4.5 40 4-48 1-41 (304)
370 PF02606 LpxK: Tetraacyldisacc 49.2 49 0.0011 31.4 6.3 34 8-41 42-75 (326)
371 PRK06067 flagellar accessory p 49.0 51 0.0011 29.4 6.2 42 5-46 27-68 (234)
372 PRK00843 egsA NAD(P)-dependent 48.9 2.3E+02 0.0049 27.2 10.9 109 2-138 3-121 (350)
373 KOG3062 RNA polymerase II elon 48.8 33 0.00071 30.4 4.5 35 5-39 3-38 (281)
374 PRK09423 gldA glycerol dehydro 48.3 1.2E+02 0.0026 29.3 9.0 96 20-138 18-118 (366)
375 KOG0780 Signal recognition par 48.1 52 0.0011 31.7 6.0 41 5-45 103-143 (483)
376 TIGR03877 thermo_KaiC_1 KaiC d 48.0 1.7E+02 0.0036 26.2 9.4 44 4-47 22-65 (237)
377 KOG2825 Putative arsenite-tran 47.4 2.2E+02 0.0048 25.9 9.5 44 3-46 18-62 (323)
378 COG0299 PurN Folate-dependent 47.2 1.9E+02 0.0041 25.1 8.9 142 264-434 42-186 (200)
379 PRK03501 ppnK inorganic polyph 47.0 30 0.00066 31.7 4.4 53 349-423 40-98 (264)
380 PF01297 TroA: Periplasmic sol 46.9 80 0.0017 28.6 7.3 81 31-137 149-231 (256)
381 TIGR00640 acid_CoA_mut_C methy 46.7 1.5E+02 0.0033 23.8 9.7 39 3-41 2-40 (132)
382 TIGR03029 EpsG chain length de 46.7 2.3E+02 0.005 25.9 11.9 38 3-40 102-141 (274)
383 TIGR03574 selen_PSTK L-seryl-t 46.5 2.2E+02 0.0048 25.6 10.3 36 6-41 2-37 (249)
384 PHA02754 hypothetical protein; 46.2 33 0.00071 22.7 3.1 25 415-439 6-30 (67)
385 TIGR01918 various_sel_PB selen 46.2 39 0.00085 32.9 5.1 46 354-401 348-395 (431)
386 TIGR01917 gly_red_sel_B glycin 46.0 39 0.00085 32.9 5.0 46 87-135 59-114 (431)
387 COG2086 FixA Electron transfer 45.8 2.4E+02 0.0052 25.8 10.6 40 91-136 101-146 (260)
388 TIGR01862 N2-ase-Ialpha nitrog 45.7 63 0.0014 32.2 6.8 26 106-134 386-411 (443)
389 PRK12724 flagellar biosynthesi 45.6 2.1E+02 0.0045 28.3 9.9 40 6-45 226-266 (432)
390 PLN02935 Bifunctional NADH kin 45.5 33 0.00071 34.4 4.6 55 347-423 261-319 (508)
391 cd08172 GlyDH-like1 Glycerol d 45.5 1.6E+02 0.0034 28.3 9.3 96 21-139 13-111 (347)
392 CHL00072 chlL photochlorophyll 45.0 41 0.00088 31.3 5.0 39 4-42 1-39 (290)
393 COG2861 Uncharacterized protei 45.0 1E+02 0.0022 27.6 6.9 39 90-133 137-178 (250)
394 TIGR00725 conserved hypothetic 45.0 67 0.0015 26.8 5.8 100 263-380 22-125 (159)
395 PRK13768 GTPase; Provisional 45.0 39 0.00084 30.7 4.8 38 5-42 4-41 (253)
396 PRK13982 bifunctional SbtC-lik 44.8 37 0.0008 34.0 4.9 46 3-49 70-115 (475)
397 COG0801 FolK 7,8-dihydro-6-hyd 44.8 51 0.0011 27.5 4.9 34 276-309 3-36 (160)
398 COG4088 Predicted nucleotide k 44.7 26 0.00056 30.6 3.2 102 6-139 4-111 (261)
399 TIGR01012 Sa_S2_E_A ribosomal 44.5 20 0.00043 31.1 2.6 35 106-140 107-143 (196)
400 cd01977 Nitrogenase_VFe_alpha 44.3 51 0.0011 32.5 5.9 26 106-134 357-382 (415)
401 TIGR00750 lao LAO/AO transport 44.3 1.3E+02 0.0027 28.2 8.2 38 5-42 36-73 (300)
402 TIGR00853 pts-lac PTS system, 44.2 65 0.0014 24.2 5.1 39 1-39 1-39 (95)
403 PLN02948 phosphoribosylaminoim 44.2 3.9E+02 0.0085 27.8 13.7 85 352-442 467-562 (577)
404 PRK10422 lipopolysaccharide co 44.1 1.5E+02 0.0033 28.3 9.1 85 19-136 203-289 (352)
405 PF08323 Glyco_transf_5: Starc 43.9 22 0.00049 32.1 3.1 37 5-41 1-43 (245)
406 PRK01185 ppnK inorganic polyph 43.8 39 0.00086 31.1 4.6 54 348-423 52-106 (271)
407 PRK06835 DNA replication prote 42.9 38 0.00082 32.2 4.5 44 4-47 184-227 (329)
408 PRK00784 cobyric acid synthase 42.7 1.4E+02 0.003 30.2 8.8 35 5-39 4-39 (488)
409 PRK10964 ADP-heptose:LPS hepto 42.4 58 0.0012 30.7 5.8 82 19-136 198-280 (322)
410 PRK13849 putative crown gall t 42.4 1.4E+02 0.0029 26.8 7.8 39 6-44 4-43 (231)
411 PF02558 ApbA: Ketopantoate re 42.4 42 0.0009 27.4 4.3 29 21-49 11-39 (151)
412 PRK13195 pyrrolidone-carboxyla 42.3 81 0.0018 28.0 6.1 26 4-29 2-29 (222)
413 PRK00885 phosphoribosylamine-- 42.3 67 0.0014 31.7 6.4 30 4-38 1-31 (420)
414 cd01452 VWA_26S_proteasome_sub 42.3 1.2E+02 0.0026 26.2 7.0 63 5-68 109-175 (187)
415 COG1663 LpxK Tetraacyldisaccha 42.3 77 0.0017 30.0 6.2 35 8-42 54-88 (336)
416 KOG1509 Predicted nucleic acid 42.2 83 0.0018 27.1 5.8 78 29-114 7-84 (209)
417 PRK13193 pyrrolidone-carboxyla 42.2 1.1E+02 0.0024 26.9 7.0 26 4-29 1-28 (209)
418 cd02032 Bchl_like This family 42.2 43 0.00094 30.6 4.8 38 4-41 1-38 (267)
419 PLN02939 transferase, transfer 42.2 49 0.0011 36.1 5.5 39 3-41 481-525 (977)
420 PF00148 Oxidored_nitro: Nitro 42.1 1.7E+02 0.0038 28.5 9.3 88 16-135 279-366 (398)
421 cd04299 GT1_Glycogen_Phosphory 42.1 4.2E+02 0.0092 28.7 12.4 107 344-457 562-687 (778)
422 PRK06395 phosphoribosylamine-- 42.0 76 0.0017 31.5 6.7 32 3-39 2-33 (435)
423 PRK04940 hypothetical protein; 41.9 67 0.0014 27.5 5.3 33 107-139 60-93 (180)
424 cd02034 CooC The accessory pro 41.8 62 0.0013 25.3 4.9 37 5-41 1-37 (116)
425 TIGR00877 purD phosphoribosyla 41.7 85 0.0018 31.0 7.1 36 4-44 1-36 (423)
426 cd02065 B12-binding_like B12 b 41.6 70 0.0015 25.0 5.3 41 6-46 2-42 (125)
427 TIGR00379 cobB cobyrinic acid 41.5 3.1E+02 0.0068 27.4 11.0 105 6-139 2-121 (449)
428 cd01715 ETF_alpha The electron 41.2 2.1E+02 0.0046 23.9 9.5 31 106-136 82-115 (168)
429 PRK11064 wecC UDP-N-acetyl-D-m 40.9 43 0.00093 33.1 4.7 35 1-40 1-35 (415)
430 PRK14075 pnk inorganic polypho 40.7 47 0.001 30.3 4.6 54 348-423 41-95 (256)
431 PRK14618 NAD(P)H-dependent gly 40.4 43 0.00092 31.8 4.5 35 1-40 1-36 (328)
432 PRK14477 bifunctional nitrogen 40.1 1.7E+02 0.0038 32.3 9.5 27 106-135 388-414 (917)
433 PRK06731 flhF flagellar biosyn 40.0 3E+02 0.0066 25.3 9.9 40 4-43 76-115 (270)
434 PRK04020 rps2P 30S ribosomal p 39.9 23 0.00051 30.9 2.4 36 106-141 113-150 (204)
435 COG0467 RAD55 RecA-superfamily 39.4 71 0.0015 29.1 5.7 46 4-49 24-69 (260)
436 PRK11199 tyrA bifunctional cho 39.4 3.6E+02 0.0078 26.2 10.8 33 3-40 98-131 (374)
437 TIGR02193 heptsyl_trn_I lipopo 39.2 77 0.0017 29.8 6.1 97 4-136 180-281 (319)
438 PF02826 2-Hacid_dh_C: D-isome 39.2 1.1E+02 0.0024 25.9 6.5 107 273-418 36-143 (178)
439 TIGR01281 DPOR_bchL light-inde 38.9 54 0.0012 30.0 4.8 38 4-41 1-38 (268)
440 PRK07308 flavodoxin; Validated 38.6 59 0.0013 26.5 4.6 38 1-40 1-39 (146)
441 PF00862 Sucrose_synth: Sucros 38.6 67 0.0015 32.2 5.4 117 14-139 296-435 (550)
442 TIGR00682 lpxK tetraacyldisacc 38.5 1.1E+02 0.0024 28.8 6.8 34 9-42 36-69 (311)
443 PRK13604 luxD acyl transferase 38.5 65 0.0014 30.2 5.2 35 4-38 37-71 (307)
444 TIGR00355 purH phosphoribosyla 37.8 1.5E+02 0.0033 29.8 7.8 39 17-66 10-48 (511)
445 PRK06718 precorrin-2 dehydroge 37.5 69 0.0015 28.0 5.0 35 2-41 9-43 (202)
446 PRK13194 pyrrolidone-carboxyla 37.5 54 0.0012 28.8 4.3 26 4-29 1-28 (208)
447 COG3349 Uncharacterized conser 37.5 36 0.00078 34.0 3.5 33 4-41 1-33 (485)
448 TIGR00345 arsA arsenite-activa 37.4 1.3E+02 0.0029 27.8 7.2 26 21-46 3-28 (284)
449 PRK10499 PTS system N,N'-diace 37.4 80 0.0017 24.3 4.8 38 1-38 1-38 (106)
450 TIGR00745 apbA_panE 2-dehydrop 37.3 39 0.00083 31.3 3.7 28 22-49 5-32 (293)
451 PF00070 Pyr_redox: Pyridine n 37.2 55 0.0012 23.3 3.7 23 19-41 10-32 (80)
452 TIGR02237 recomb_radB DNA repa 37.2 2.7E+02 0.006 24.0 9.1 43 6-48 15-58 (209)
453 TIGR01428 HAD_type_II 2-haloal 37.2 1.9E+02 0.0041 24.7 7.8 21 21-41 98-118 (198)
454 PTZ00318 NADH dehydrogenase-li 37.2 36 0.00079 33.6 3.6 37 1-42 8-44 (424)
455 PRK07313 phosphopantothenoylcy 37.1 2.7E+02 0.0058 23.9 9.9 51 370-421 113-179 (182)
456 TIGR00118 acolac_lg acetolacta 37.1 1.6E+02 0.0035 30.3 8.5 27 351-377 65-97 (558)
457 PF02702 KdpD: Osmosensitive K 37.0 57 0.0012 28.4 4.2 38 3-40 5-42 (211)
458 TIGR01380 glut_syn glutathione 36.9 56 0.0012 30.8 4.7 40 4-43 1-43 (312)
459 cd01141 TroA_d Periplasmic bin 36.9 55 0.0012 27.8 4.3 30 106-135 68-99 (186)
460 cd08170 GlyDH Glycerol dehydro 36.8 2.2E+02 0.0047 27.3 8.8 45 92-139 65-112 (351)
461 PRK09302 circadian clock prote 36.8 3.9E+02 0.0084 27.2 11.0 45 4-48 274-318 (509)
462 PRK14619 NAD(P)H-dependent gly 36.7 49 0.0011 31.1 4.2 34 3-41 4-37 (308)
463 cd06318 PBP1_ABC_sugar_binding 36.7 3.2E+02 0.0069 24.6 10.0 31 106-136 54-88 (282)
464 PRK10490 sensor protein KdpD; 36.5 1.7E+02 0.0038 32.2 8.9 37 3-39 24-60 (895)
465 COG4081 Uncharacterized protei 36.5 54 0.0012 26.0 3.6 40 6-45 6-46 (148)
466 PRK00005 fmt methionyl-tRNA fo 36.4 3E+02 0.0065 25.9 9.4 31 4-39 1-31 (309)
467 PF10649 DUF2478: Protein of u 36.3 2.3E+02 0.005 23.7 7.5 117 9-137 4-132 (159)
468 PRK05703 flhF flagellar biosyn 36.3 3.3E+02 0.0071 27.0 10.0 39 5-43 223-263 (424)
469 PF01380 SIS: SIS domain SIS d 36.2 1.2E+02 0.0027 23.6 6.1 39 10-48 59-97 (131)
470 COG1797 CobB Cobyrinic acid a, 36.1 47 0.001 32.5 3.9 33 5-37 2-35 (451)
471 PRK03708 ppnK inorganic polyph 36.0 53 0.0011 30.4 4.2 53 348-422 57-112 (277)
472 PRK05784 phosphoribosylamine-- 35.9 68 0.0015 32.4 5.3 34 4-42 1-36 (486)
473 PF05225 HTH_psq: helix-turn-h 35.8 60 0.0013 20.4 3.2 24 408-431 1-25 (45)
474 COG2987 HutU Urocanate hydrata 35.7 91 0.002 30.6 5.7 108 258-371 384-504 (561)
475 PF13450 NAD_binding_8: NAD(P) 35.7 49 0.0011 22.9 3.1 22 20-41 8-29 (68)
476 COG1748 LYS9 Saccharopine dehy 35.7 2.8E+02 0.0061 27.1 9.1 42 3-49 1-44 (389)
477 PRK13196 pyrrolidone-carboxyla 35.6 60 0.0013 28.6 4.3 27 4-30 2-30 (211)
478 cd07025 Peptidase_S66 LD-Carbo 35.5 69 0.0015 29.7 5.0 75 285-378 44-120 (282)
479 PRK14568 vanB D-alanine--D-lac 35.2 64 0.0014 30.9 4.8 41 1-41 1-45 (343)
480 PLN03064 alpha,alpha-trehalose 35.1 1.9E+02 0.004 32.0 8.6 101 339-458 447-560 (934)
481 cd01019 ZnuA Zinc binding prot 35.0 3.5E+02 0.0076 25.0 9.6 44 90-136 214-259 (286)
482 PRK14076 pnk inorganic polypho 34.7 49 0.0011 34.2 4.2 52 352-423 350-405 (569)
483 PF03853 YjeF_N: YjeF-related 34.7 80 0.0017 26.6 4.8 35 3-38 25-59 (169)
484 TIGR02990 ectoine_eutA ectoine 34.7 2.4E+02 0.0051 25.4 8.1 104 17-139 105-217 (239)
485 TIGR01689 EcbF-BcbF capsule bi 34.7 1.5E+02 0.0033 23.6 6.0 24 19-42 28-51 (126)
486 cd08171 GlyDH-like2 Glycerol d 34.6 3.8E+02 0.0082 25.6 10.0 96 20-139 11-113 (345)
487 PRK07710 acetolactate synthase 34.4 1.8E+02 0.0039 30.2 8.3 27 351-377 79-111 (571)
488 COG2085 Predicted dinucleotide 34.2 79 0.0017 27.7 4.7 22 21-42 14-35 (211)
489 PRK06456 acetolactate synthase 34.1 2.1E+02 0.0045 29.7 8.7 27 351-377 69-101 (572)
490 PRK08181 transposase; Validate 34.1 70 0.0015 29.4 4.6 41 4-44 107-147 (269)
491 PRK11914 diacylglycerol kinase 34.1 1.1E+02 0.0024 28.6 6.2 69 288-378 24-96 (306)
492 PRK09545 znuA high-affinity zi 34.1 3.3E+02 0.0071 25.6 9.3 43 90-135 238-282 (311)
493 PF13460 NAD_binding_10: NADH( 34.0 65 0.0014 27.2 4.3 30 11-42 4-33 (183)
494 PRK06179 short chain dehydroge 33.9 75 0.0016 28.8 5.0 37 1-40 1-37 (270)
495 cd01983 Fer4_NifH The Fer4_Nif 33.9 97 0.0021 22.3 4.8 33 6-38 2-34 (99)
496 PRK07236 hypothetical protein; 33.9 68 0.0015 31.1 4.9 35 1-40 4-38 (386)
497 PRK01966 ddl D-alanyl-alanine 33.8 71 0.0015 30.4 4.9 41 1-41 1-45 (333)
498 COG4394 Uncharacterized protei 33.5 1.2E+02 0.0026 28.0 5.7 43 334-379 240-287 (370)
499 COG2120 Uncharacterized protei 33.4 70 0.0015 28.8 4.5 37 3-39 10-46 (237)
500 PRK08293 3-hydroxybutyryl-CoA 33.4 60 0.0013 30.1 4.2 35 1-40 1-35 (287)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-66 Score=507.92 Aligned_cols=433 Identities=32% Similarity=0.617 Sum_probs=340.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
+.||+++|++++||++|++.||+.|+.+|++||+++++.+...+.+... ...++++..+|++++.+. ..+...+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~~-~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDDP-PRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCCc-cccHHHHH
Confidence 5699999999999999999999999999999999999888766654311 113699999998775422 22344445
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCCC
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGT 162 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (459)
..+...+.+.++++++.+... ..+++||+|.+..|+..+|+++|||++.++++++..+..+.+++.....+..+..+.
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 555556778888888886531 235899999999999999999999999999999988887776654443332221111
Q ss_pred ccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhc---------
Q 012652 163 PIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFN--------- 233 (459)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--------- 233 (459)
+...++...+|+++.++..+++ .++...... ...+..+.+..+....++.+++||+.+||+...+
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 232 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLP-WLIGTPKAR-----KARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNG 232 (448)
T ss_pred cccccccccCCCCCCCChhhCc-chhcCCCcc-----hHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccc
Confidence 2111223357888888888877 332222111 3234555555666777899999999999985322
Q ss_pred cCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcc-cCCHHHHHHHHHHHhhCCCCEEEEEcC
Q 012652 234 MIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHT-VLDHNQFQELALGLEICNRPFLWVVRP 312 (459)
Q Consensus 234 ~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~ 312 (459)
..|+++.|||++............++.+.++.+||++++++++|||||||+. ..+.+++++++.+|+.++++|||++..
T Consensus 233 ~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~ 312 (448)
T PLN02562 233 QNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNP 312 (448)
T ss_pred cCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 3578999999986542110011123456678899999988899999999985 678999999999999999999999975
Q ss_pred CCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhce
Q 012652 313 DITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDI 392 (459)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~ 392 (459)
. ....+|++|+++.++|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.
T Consensus 313 ~----~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~ 388 (448)
T PLN02562 313 V----WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDV 388 (448)
T ss_pred C----chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 3 123588899999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 393 WKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 393 ~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
+|+|+.+ ..++.++|.++|+++|.|++||+||++++++++++ .+||||.+++++||++++
T Consensus 389 ~g~g~~~-----~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 389 WKIGVRI-----SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred hCceeEe-----CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 6999887 35799999999999999999999999999999877 567999999999999875
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1e-64 Score=493.25 Aligned_cols=432 Identities=26% Similarity=0.533 Sum_probs=336.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCC-CCCChHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWE-ERTDPGKL 81 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 81 (459)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. ....++++..+|++++++. .......+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 4699999999999999999999999999999999999876421 10 1113699999998887642 22233455
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCC-CCCC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGI-IDSN 160 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (459)
+..+...+...++++++.+..+.+.++++||+|.+..|+..+|+++|||++.+++++++.+..+.+++.+...+. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 555655667778888877642111467999999999999999999999999999999998877665444333221 1111
Q ss_pred CCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC-----
Q 012652 161 GTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI----- 235 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~----- 235 (459)
... .+....+|++++++..+++ ...... . ......+.. ......++.+++||+.+||....+.+
T Consensus 160 ~~~--~~~~~~iPg~~~~~~~dlp-~~~~~~-~------~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~ 228 (451)
T PLN02410 160 EPK--GQQNELVPEFHPLRCKDFP-VSHWAS-L------ESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQLQ 228 (451)
T ss_pred ccc--cCccccCCCCCCCChHHCc-chhcCC-c------HHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhccC
Confidence 100 1122357888877777766 222111 1 222222222 22356788999999999998755543
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCC
Q 012652 236 PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDIT 315 (459)
Q Consensus 236 p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 315 (459)
+++++|||++...... ...+..+.++.+||++++++++|||||||....+.+++.+++.+|+.++++|||+++....
T Consensus 229 ~~v~~vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~ 305 (451)
T PLN02410 229 IPVYPIGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSV 305 (451)
T ss_pred CCEEEecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcc
Confidence 5799999997543211 0012234578999999988999999999999999999999999999999999999984311
Q ss_pred CC--CCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhcee
Q 012652 316 TD--ANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIW 393 (459)
Q Consensus 316 ~~--~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~ 393 (459)
.+ ....+|++|++++++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+
T Consensus 306 ~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 385 (451)
T PLN02410 306 RGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVW 385 (451)
T ss_pred cccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHh
Confidence 11 1124899999999999999999999999999999999999999999999999999999999999999999998756
Q ss_pred eeeeeeecCCCCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhC
Q 012652 394 KVGLKLDKDESGIITGEEISNKLVQVLGDQ---NFKARALELKEITMSSVREGGSSYKTFQNFLEWVKT 459 (459)
Q Consensus 394 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (459)
|+|+.+. ..+++++|.++|+++|.++ +||++|++|++.+++++++||||.+++++||+++++
T Consensus 386 ~~G~~~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 386 KIGIQVE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CeeEEeC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 9999995 6789999999999999775 799999999999999999999999999999999874
No 3
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.4e-64 Score=488.87 Aligned_cols=441 Identities=23% Similarity=0.432 Sum_probs=332.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcch-HHHHhhhhccCCCCCCeEEEecCCCCCCC--CCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHG--FRVTFVNSEYNH-KRVMKSLEGKNYLGEQIRLVSIPDGMEPW--EER 75 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rG--h~Vt~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 75 (459)
|++.||+++|++++||++|++.||+.|+.+| ..|||++++.+. ..+...........++++|..+|+..... ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8889999999999999999999999999998 999999988765 23322211101112369999998643211 112
Q ss_pred CChHHHHHHHHHhccH----HHHHHHHHHhCCCCCCc-cEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhccc
Q 012652 76 TDPGKLIEKVLQVMPG----KLEELIEEINGRDDEKI-DCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPK 150 (459)
Q Consensus 76 ~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~p-Dlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~ 150 (459)
.+....+..+...+.+ .+.++++..... .+| ++||+|.+..|+..+|+++|||++.++++++..+..+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALD--GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccC--CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 2344333333344433 344444432111 234 999999999999999999999999999999988888777654
Q ss_pred ccccCCCCCCCCccccccccccCCC-CCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCch
Q 012652 151 LIDDGIIDSNGTPIRKQMIQLAPNM-LEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEP 229 (459)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 229 (459)
...... ....+... ....+|++ ++++..+++ .++... .. +..+.+......+++.+++||++++|+
T Consensus 159 ~~~~~~--~~~~~~~~-~~~~vPgl~~~l~~~dlp-~~~~~~--------~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~ 225 (468)
T PLN02207 159 RHSKDT--SVFVRNSE-EMLSIPGFVNPVPANVLP-SALFVE--------DG-YDAYVKLAILFTKANGILVNSSFDIEP 225 (468)
T ss_pred cccccc--ccCcCCCC-CeEECCCCCCCCChHHCc-chhcCC--------cc-HHHHHHHHHhcccCCEEEEEchHHHhH
Confidence 322100 00001111 23358998 678888887 333211 11 333444455678899999999999998
Q ss_pred hhh------ccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCC
Q 012652 230 GAF------NMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICN 303 (459)
Q Consensus 230 ~~~------~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~ 303 (459)
+.. +..|+++.|||++........ ......++++.+||++++++++|||||||....+.+++++++.+|+.++
T Consensus 226 ~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~ 304 (468)
T PLN02207 226 YSVNHFLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQ 304 (468)
T ss_pred HHHHHHHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCC
Confidence 732 345789999999864321100 0001133679999999988899999999999999999999999999999
Q ss_pred CCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccc
Q 012652 304 RPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQF 383 (459)
Q Consensus 304 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~ 383 (459)
++|||+++.... .....+|++|++++++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 305 ~~flW~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 305 YRFLWSLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred CcEEEEEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccch
Confidence 999999985311 1123588999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhceeeeeeeeecC----CCCcccHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 384 LNESYICDIWKVGLKLDKD----ESGIITGEEISNKLVQVLG--DQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 384 ~na~rv~~~~G~G~~~~~~----~~~~~~~~~l~~~i~~ll~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
.||+++++.+|+|+.+..+ +...++.++|.++|+++|. +++||+||++|++.+++++.+||||++++++||+++
T Consensus 384 ~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~ 463 (468)
T PLN02207 384 LNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDV 463 (468)
T ss_pred hhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999877657999977421 1234699999999999997 679999999999999999999999999999999998
Q ss_pred h
Q 012652 458 K 458 (459)
Q Consensus 458 ~ 458 (459)
+
T Consensus 464 ~ 464 (468)
T PLN02207 464 I 464 (468)
T ss_pred H
Confidence 6
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.9e-64 Score=484.68 Aligned_cols=433 Identities=28% Similarity=0.504 Sum_probs=336.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcc-hHHHHhhhhccCCCCCCeEEEecCCCCCCCC--CCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAK-HGFRVTFVNSEYN-HKRVMKSLEGKNYLGEQIRLVSIPDGMEPWE--ERT 76 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~-rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 76 (459)
|.+.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ...+.+. ....+++++..++++++++. ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~----~~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN----HNNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc----CCCCCCEEEEEcCCCCCCccccccc
Confidence 66779999999999999999999999995 7999999999854 2211111 01113699999998887652 133
Q ss_pred ChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCC
Q 012652 77 DPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGI 156 (459)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (459)
+....+..+...+.+.++++++.+.... .++++||+|.+.+|+..+|+++|||++.+++++++....+++++...
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 4555666666778888999988764311 34599999999999999999999999999999999888877643100
Q ss_pred CCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhc--cCCEEEEcCCccCchhhhcc
Q 012652 157 IDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMK--VADFQFCNSTYELEPGAFNM 234 (459)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~ 234 (459)
.....+|++++++..+++ .++...... ......+.+...... .++.+++||+.+||....+.
T Consensus 152 ----------~~~~~iPglp~l~~~dlp-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 215 (455)
T PLN02152 152 ----------NSVFEFPNLPSLEIRDLP-SFLSPSNTN-----KAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTA 215 (455)
T ss_pred ----------CCeeecCCCCCCchHHCc-hhhcCCCCc-----hhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHh
Confidence 012247888888888877 444322222 223344444444332 24699999999999887776
Q ss_pred CC--ccccccccccCCC-CCCCCC---CCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEE
Q 012652 235 IP--ELLPVGPLLASNR-LGNSAG---HFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLW 308 (459)
Q Consensus 235 ~p--~v~~vGp~~~~~~-~~~~~~---~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 308 (459)
+. .++.|||++.... .....+ ..+..+.++.+||++++++++|||||||...++.+++++++.+|+.++++|||
T Consensus 216 l~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 216 IPNIEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred hhcCCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 63 5899999975321 000000 01223457999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCC-----CC---CCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccccc
Q 012652 309 VVRPDITT-----DA---NDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFV 380 (459)
Q Consensus 309 ~~~~~~~~-----~~---~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~ 380 (459)
++...... .. ...++++|.++.++|+++.+|+||.+||+|+++++||||||+||+.||+++|||+|++|+++
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 99753110 00 11347899999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 381 DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ--NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 381 DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
||+.||+++++.||+|+.+..++.+.++.++|.++|+++|+|+ +||+||++|++.+++++.+||+|++++++||++++
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 9999999998756777777543234569999999999999765 48999999999999999999999999999999874
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.9e-64 Score=485.45 Aligned_cols=425 Identities=28% Similarity=0.558 Sum_probs=334.0
Q ss_pred CC--CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCC--CCCC
Q 012652 1 MS--SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPW--EERT 76 (459)
Q Consensus 1 m~--~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 76 (459)
|+ +.||+++|++++||++|+++||+.|+.+|+.|||++++.+...+... ...++++..++++++++ +...
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCccccccc
Confidence 65 46999999999999999999999999999999999998876554321 11369999999988863 2233
Q ss_pred ChHHHHHHHHHhccHHHHHHHHHHhCCCCCCc-cEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccC
Q 012652 77 DPGKLIEKVLQVMPGKLEELIEEINGRDDEKI-DCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDG 155 (459)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p-Dlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (459)
+...++..+...+.+.++++++.+... .+| |+||+|.+.+|+..+|+++|||++.+++++++....+++ +. ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~-~~~~ 150 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQST--DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SY-INNG 150 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhcc--CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HH-hccC
Confidence 455666666667788888888876431 345 999999999999999999999999999988877654432 11 1110
Q ss_pred CCCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC
Q 012652 156 IIDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI 235 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 235 (459)
+....+|++|.++..+++ .++...... ......+.+.......++.+++||+.+||....+.+
T Consensus 151 -----------~~~~~~pg~p~l~~~dlp-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 213 (449)
T PLN02173 151 -----------SLTLPIKDLPLLELQDLP-TFVTPTGSH-----LAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELL 213 (449)
T ss_pred -----------CccCCCCCCCCCChhhCC-hhhcCCCCc-----hHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHH
Confidence 011236788877777777 433322222 333444555556677899999999999998755544
Q ss_pred ---CccccccccccCCC----C-C-CCC-CCCC--CCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCC
Q 012652 236 ---PELLPVGPLLASNR----L-G-NSA-GHFW--PEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICN 303 (459)
Q Consensus 236 ---p~v~~vGp~~~~~~----~-~-~~~-~~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~ 303 (459)
++++.|||++.... . . ... ...+ ..++++.+||++++++++|||||||....+.+++.+++.+| .+
T Consensus 214 ~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~ 291 (449)
T PLN02173 214 SKVCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SN 291 (449)
T ss_pred HhcCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cC
Confidence 46889999974210 0 0 000 0111 23456999999998899999999999999999999999999 67
Q ss_pred CCEEEEEcCCCCCCCCCCCChhHHHHh-cCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccccccc
Q 012652 304 RPFLWVVRPDITTDANDVYPRGFQERV-ATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQ 382 (459)
Q Consensus 304 ~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ 382 (459)
.+|+|++... ....+|++|+++. ++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||
T Consensus 292 ~~flWvvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 292 FSYLWVVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred CCEEEEEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 7899999753 2235888998887 6889999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhceeeeeeeeecCCC-CcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 383 FLNESYICDIWKVGLKLDKDES-GIITGEEISNKLVQVLGDQ---NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 383 ~~na~rv~~~~G~G~~~~~~~~-~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
+.||+++++.||+|+.+..++. ..++.++|.++|+++|.|+ ++|+||+++++.+++++++||||.+++++|++++.
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9999999975799999865221 2469999999999999764 69999999999999999999999999999999875
No 6
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.1e-63 Score=487.67 Aligned_cols=444 Identities=30% Similarity=0.554 Sum_probs=342.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhh--cc--CC-CCCCeEEEecCCCCCCCCC-CC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLE--GK--NY-LGEQIRLVSIPDGMEPWEE-RT 76 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~--~~--~~-~~~~~~~~~i~~~~~~~~~-~~ 76 (459)
+.||+++|++++||++|++.||+.|+.+|..|||++++.+...+.+... .. .. ....+.|..++++++++.. ..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 6799999999999999999999999999999999999987766543110 00 00 0123677778888765432 22
Q ss_pred ChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCC
Q 012652 77 DPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGI 156 (459)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (459)
+...++..+...+.+.++++++.+.... ..+++||+|.+..|+..+|+++|||.+.+++++++.+..+.+++ .+.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~----~~~ 161 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY----HGL 161 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----hcC
Confidence 3444555555566778888888764321 33499999999999999999999999999999999988877753 222
Q ss_pred CCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC-
Q 012652 157 IDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI- 235 (459)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~- 235 (459)
++....... +....+|++|.++..+++ .++...... ....+.+.+..+....++.+++||+.+||......+
T Consensus 162 ~~~~~~~~~-~~~~~iPglp~l~~~dlp-~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 234 (480)
T PLN02555 162 VPFPTETEP-EIDVQLPCMPLLKYDEIP-SFLHPSSPY-----PFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMS 234 (480)
T ss_pred CCcccccCC-CceeecCCCCCcCHhhCc-ccccCCCCc-----hHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHh
Confidence 111101101 122358999988888887 433321122 334455555566677889999999999998765543
Q ss_pred --CccccccccccCCCCC-CCC-CCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEc
Q 012652 236 --PELLPVGPLLASNRLG-NSA-GHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVR 311 (459)
Q Consensus 236 --p~v~~vGp~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 311 (459)
..++.|||+....... ... ...+..++++.+||++++++++|||||||+...+.+++.+++.+++..+++|||+++
T Consensus 235 ~~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~ 314 (480)
T PLN02555 235 KLCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMR 314 (480)
T ss_pred hCCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 1388999997532110 000 111344678999999998889999999999999999999999999999999999987
Q ss_pred CCCCC--CCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhh
Q 012652 312 PDITT--DANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYI 389 (459)
Q Consensus 312 ~~~~~--~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv 389 (459)
..... .....+|+++.++.++|+++.+|+||.+||.|+++++||||||+||++||+++|||||++|+++||+.||+++
T Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 394 (480)
T PLN02555 315 PPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394 (480)
T ss_pred cCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH
Confidence 43110 1123588899988999999999999999999999999999999999999999999999999999999999999
Q ss_pred hceeeeeeeeecC--CCCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 390 CDIWKVGLKLDKD--ESGIITGEEISNKLVQVLGDQ---NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 390 ~~~~G~G~~~~~~--~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
++.||+|+.+... ....++.++|.++|+++|.++ ++|+||++|++.+++++++||||.+++++||++++
T Consensus 395 ~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~ 468 (480)
T PLN02555 395 VDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLV 468 (480)
T ss_pred HHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 8867999999421 124689999999999999653 79999999999999999999999999999999986
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=4.5e-63 Score=483.70 Aligned_cols=428 Identities=25% Similarity=0.489 Sum_probs=328.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHH--HHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQC--LAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~--L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
+.||+++|++++||++|++.||++ |++||++|||++++.+...+++.. .....+++..++++++++.. .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 579999999999999999999999 569999999999998877664321 11235788878877776532 34445
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCC
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSN 160 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (459)
++..+...+.+.++++++. .+||+||+|.+..|+..+|+++|||.+.++++++..+..+.+++.. .+..+..
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~~~ 154 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFPDL 154 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCCcc
Confidence 5555555556666666655 6799999999999999999999999999999999888877654321 1111110
Q ss_pred CCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHH-HHHHhhccCCEEEEcCCccCchhhhccC---C
Q 012652 161 GTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSI-RTIKAMKVADFQFCNSTYELEPGAFNMI---P 236 (459)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~---p 236 (459)
...+....+|++++++..+++ .++.... ...+.... +.......++.+++||+.++|....+.+ +
T Consensus 155 ---~~~~~~~~~Pgl~~~~~~dl~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 223 (456)
T PLN02210 155 ---EDLNQTVELPALPLLEVRDLP-SFMLPSG-------GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLK 223 (456)
T ss_pred ---cccCCeeeCCCCCCCChhhCC-hhhhcCC-------chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcC
Confidence 000112347888877777766 3222211 11122222 2223456678999999999998766653 5
Q ss_pred ccccccccccCC---CCCCC--C---CCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEE
Q 012652 237 ELLPVGPLLASN---RLGNS--A---GHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLW 308 (459)
Q Consensus 237 ~v~~vGp~~~~~---~~~~~--~---~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 308 (459)
++++|||++... ....+ . .+.+..++++.+|+++.+++++|||||||......+++.+++.+|+..+++|||
T Consensus 224 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw 303 (456)
T PLN02210 224 PVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLW 303 (456)
T ss_pred CEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 799999997421 10000 0 012345678999999988899999999999888999999999999999999999
Q ss_pred EEcCCCCCCCCCCCChhHHHHh-cCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhh
Q 012652 309 VVRPDITTDANDVYPRGFQERV-ATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNES 387 (459)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~-~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~ 387 (459)
+++... ....++.+.+.. ++++++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+
T Consensus 304 ~~~~~~----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~ 379 (456)
T PLN02210 304 VIRPKE----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDAR 379 (456)
T ss_pred EEeCCc----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHH
Confidence 997531 112334566665 478888999999999999999999999999999999999999999999999999999
Q ss_pred hhhceeeeeeeeecCC-CCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 388 YICDIWKVGLKLDKDE-SGIITGEEISNKLVQVLGDQ---NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 388 rv~~~~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
++++.+|+|+.+..++ ...++.++|.++|+++|.++ ++|+||++|++.+++++++||||.+++++||++++
T Consensus 380 ~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 380 LLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9986469999996421 23689999999999999876 49999999999999999999999999999999986
No 8
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-62 Score=486.21 Aligned_cols=438 Identities=25% Similarity=0.439 Sum_probs=325.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHH-hh-hhccCC--CCCCeEEEecCCCCCCCCCCC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHG--FRVTFVNSEYNHKRVM-KS-LEGKNY--LGEQIRLVSIPDGMEPWEERT 76 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rG--h~Vt~~~~~~~~~~v~-~~-~~~~~~--~~~~~~~~~i~~~~~~~~~~~ 76 (459)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+..... +. ...... ...++++..+|++..+...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc--
Confidence 78999999999999999999999999998 8899999987654221 00 000001 1236999999877643211
Q ss_pred ChHHHHHHHHHhccHHHHHHHHHHhCC---CCCCc-cEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhccccc
Q 012652 77 DPGKLIEKVLQVMPGKLEELIEEINGR---DDEKI-DCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLI 152 (459)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~p-Dlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~ 152 (459)
. ..+. .+...+...+++.++.+... .+.+| ++||+|.+..|+..+|+++|||++.+++++++.+..+.+++...
T Consensus 80 ~-~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 80 D-PTFQ-SYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred c-hHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 1 1211 22233344455555444211 00234 89999999999999999999999999999999999888876543
Q ss_pred ccCCCCCCCCccccccccccCCCC-CCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhh
Q 012652 153 DDGIIDSNGTPIRKQMIQLAPNML-EMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGA 231 (459)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 231 (459)
..+..+..+.+...+ ...+|+++ +++..+++ ..+.. +..+..+.+.......++.+++||+.++|...
T Consensus 158 ~~~~~~~~~~~~~~~-~v~iPgl~~pl~~~dlp-~~~~~---------~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 158 DEKKYDVSELEDSEV-ELDVPSLTRPYPVKCLP-SVLLS---------KEWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred cccccCccccCCCCc-eeECCCCCCCCCHHHCC-CcccC---------HHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 221111001111111 22478874 67777766 22221 22234444555567789999999999999754
Q ss_pred hc-------cCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCC
Q 012652 232 FN-------MIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNR 304 (459)
Q Consensus 232 ~~-------~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (459)
.. ..|+++.|||++....... ....+.+.++.+|+++++++++|||||||+...+.+++.+++.+|+.+++
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl~~~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPVLHLENSGD--DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred HHHHHhcccCCCCEEEeCCCcccccccc--ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 33 2378999999943211110 00012456899999998888999999999988899999999999999999
Q ss_pred CEEEEEcCCCC----------CCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCcee
Q 012652 305 PFLWVVRPDIT----------TDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFL 374 (459)
Q Consensus 305 ~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v 374 (459)
+|||+++.... ......+|++|+++.++|+++++|+||.+||.|+++++||||||+||+.||+++|||||
T Consensus 305 ~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 305 RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred CeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 99999975210 00112368999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhh-hhhceeeeeeeeecC--------CCCcccHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhcCC
Q 012652 375 CWPYFVDQFLNES-YICDIWKVGLKLDKD--------ESGIITGEEISNKLVQVLG-DQNFKARALELKEITMSSVREGG 444 (459)
Q Consensus 375 ~~P~~~DQ~~na~-rv~~~~G~G~~~~~~--------~~~~~~~~~l~~~i~~ll~-~~~~~~~a~~l~~~~~~~~~~~g 444 (459)
++|+++||+.||+ ++++ +|+|+.+... ....+++++|.++|+++|. |++||+||+++++.+++++++||
T Consensus 385 ~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gG 463 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGG 463 (481)
T ss_pred ecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999995 4666 7999998631 1146899999999999996 78999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 012652 445 SSYKTFQNFLEWVK 458 (459)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (459)
||.+++++||++++
T Consensus 464 ss~~~l~~lv~~~~ 477 (481)
T PLN02554 464 SSHTALKKFIQDVT 477 (481)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999986
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3e-62 Score=476.04 Aligned_cols=425 Identities=26% Similarity=0.485 Sum_probs=328.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCC----CCCCCCCCCC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPD----GMEPWEERTD 77 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~ 77 (459)
+.||+++|++++||++|++.||+.|+ .+|+.|||++++.+...+.+... ...++++..+|. ++++.. ..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~~--~~ 78 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDPS--AH 78 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCCC--cc
Confidence 78999999999999999999999998 78999999999987665533211 112588888874 443211 12
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCC
Q 012652 78 PGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGII 157 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (459)
....+..+...+.+.++++++.+. .+|++||+|.+.+|+..+|+++|||++.++++++..+..+.+++.+... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~--~ 152 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD--I 152 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc--c
Confidence 222233333345566777776641 4789999999999999999999999999999999887776665432211 0
Q ss_pred CCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC--
Q 012652 158 DSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI-- 235 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-- 235 (459)
... ..... ....+|++++++..+++ ..+..+. ...+..+.+.......++.+++||+.+||....+.+
T Consensus 153 ~~~-~~~~~-~~~~iPg~~~l~~~dlp-~~~~~~~-------~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 153 KEE-HTVQR-KPLAMPGCEPVRFEDTL-DAYLVPD-------EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred ccc-cccCC-CCcccCCCCccCHHHhh-HhhcCCC-------cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 000 00011 12357888888777776 2222211 223445555556677899999999999998766542
Q ss_pred ---------CccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCE
Q 012652 236 ---------PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPF 306 (459)
Q Consensus 236 ---------p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 306 (459)
++++.|||++...... ..++++.+||++++++++|||||||...++.+++++++.+|+.++++|
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 295 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRF 295 (481)
T ss_pred ccccccccCCceEEecCccCCcCCC-------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCE
Confidence 4699999997532211 245679999999888999999999999999999999999999999999
Q ss_pred EEEEcCCCCC---------------C-CCCCCChhHHHHhcCCce-eecccchhhhhcCCCccceeeccCchhHHHhhhc
Q 012652 307 LWVVRPDITT---------------D-ANDVYPRGFQERVATRGQ-MIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSN 369 (459)
Q Consensus 307 i~~~~~~~~~---------------~-~~~~~~~~~~~~~~~nv~-i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~ 369 (459)
||+++...+. . ....+|++|++++.++.. +.+|+||.+||+|+++++||||||+||+.||+++
T Consensus 296 lW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~ 375 (481)
T PLN02992 296 VWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVG 375 (481)
T ss_pred EEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHc
Confidence 9999642110 0 123488999999876655 4599999999999999999999999999999999
Q ss_pred CCceeccccccccchhhhhhh-ceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhh--cC
Q 012652 370 GIPFLCWPYFVDQFLNESYIC-DIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ---NFKARALELKEITMSSVR--EG 443 (459)
Q Consensus 370 gvP~v~~P~~~DQ~~na~rv~-~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~--~~ 443 (459)
|||||++|+++||+.||++++ + +|+|+.++.. ...++.++|.++|+++|.++ .+|++++++++.+++++. +|
T Consensus 376 GVP~l~~P~~~DQ~~na~~~~~~-~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~G 453 (481)
T PLN02992 376 GVPMIAWPLFAEQNMNAALLSDE-LGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGG 453 (481)
T ss_pred CCCEEecCccchhHHHHHHHHHH-hCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999995 6 8999999731 13589999999999999763 799999999999999994 59
Q ss_pred CChHHHHHHHHHHHh
Q 012652 444 GSSYKTFQNFLEWVK 458 (459)
Q Consensus 444 g~~~~~~~~~~~~~~ 458 (459)
|||.+++++|+++++
T Consensus 454 GSS~~~l~~~v~~~~ 468 (481)
T PLN02992 454 GVAHESLCRVTKECQ 468 (481)
T ss_pred CchHHHHHHHHHHHH
Confidence 999999999999875
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.3e-62 Score=478.61 Aligned_cols=437 Identities=25% Similarity=0.462 Sum_probs=333.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCcch----HHHHhhhhccCCCCCCeEEEecCCCCCCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHG----FRVTFVNSEYNH----KRVMKSLEGKNYLGEQIRLVSIPDGMEPW 72 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rG----h~Vt~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~i~~~~~~~ 72 (459)
|.|.||+++|++++||++|++.||+.|+.+| +.|||++++.+. ..+............++++..+|++..+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 7788999999999999999999999999986 799999986542 23333211111111259999998764322
Q ss_pred CCCCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhccccc
Q 012652 73 EERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLI 152 (459)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~ 152 (459)
...+...++..+.+.+.+.++++++.+. .++++||+|.+.+|+..+|+++|||++.++++++..+..+.+++...
T Consensus 81 -~~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 -DAAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -ccccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1223344555555567777888877641 35799999999999999999999999999999999988888765432
Q ss_pred ccCCCCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhh
Q 012652 153 DDGIIDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAF 232 (459)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 232 (459)
.. .+. +.....+ ...+|++++++..+++ .+..... ...+..+....+...+++.+++||+.+||....
T Consensus 156 ~~--~~~-~~~~~~~-~~~iPGlp~l~~~dlp-~~~~~~~-------~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 223 (480)
T PLN00164 156 EE--VAV-EFEEMEG-AVDVPGLPPVPASSLP-APVMDKK-------SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVL 223 (480)
T ss_pred cc--ccC-cccccCc-ceecCCCCCCChHHCC-chhcCCC-------cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHH
Confidence 21 100 0111011 2248899888888887 3332211 111233333344567789999999999998654
Q ss_pred ccC-----------CccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhh
Q 012652 233 NMI-----------PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEI 301 (459)
Q Consensus 233 ~~~-----------p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~ 301 (459)
+.+ |+++.|||++...... ...+.++++.+||++++++++|||||||......+++.+++.+|+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 224 AAIADGRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred HHHHhccccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 433 5799999997432111 1124567899999999889999999999988999999999999999
Q ss_pred CCCCEEEEEcCCCCC--------CCCCCCChhHHHHhcCCceee-cccchhhhhcCCCccceeeccCchhHHHhhhcCCc
Q 012652 302 CNRPFLWVVRPDITT--------DANDVYPRGFQERVATRGQMI-GWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIP 372 (459)
Q Consensus 302 ~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~nv~i~-~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP 372 (459)
++++|||+++..... +....+|++|++++.+...++ +|+||.+||+|+++++|||||||||++||+++|||
T Consensus 300 s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP 379 (480)
T PLN00164 300 SGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 379 (480)
T ss_pred cCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCC
Confidence 999999999853110 011238889998887777666 99999999999999999999999999999999999
Q ss_pred eeccccccccchhhhhhhceeeeeeeeecCC--CCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCC
Q 012652 373 FLCWPYFVDQFLNESYICDIWKVGLKLDKDE--SGIITGEEISNKLVQVLGDQ-----NFKARALELKEITMSSVREGGS 445 (459)
Q Consensus 373 ~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~--~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~ 445 (459)
||++|+++||+.||+++++.+|+|+.+..++ ...+++++|.++|+++|.|+ .+|++|++|++.+++++.+|||
T Consensus 380 ~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGS 459 (480)
T PLN00164 380 MAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGS 459 (480)
T ss_pred EEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999998754479999986421 12479999999999999753 4899999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 012652 446 SYKTFQNFLEWVK 458 (459)
Q Consensus 446 ~~~~~~~~~~~~~ 458 (459)
|.+++++||+++.
T Consensus 460 S~~~l~~~v~~~~ 472 (480)
T PLN00164 460 SYAALQRLAREIR 472 (480)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 11
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.8e-62 Score=478.37 Aligned_cols=430 Identities=25% Similarity=0.485 Sum_probs=331.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCC-CCCChH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWE-ERTDPG 79 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 79 (459)
+.||+++|++++||++|++.||++|+.+ ||+|||++++.+...+++.. ...+++|..++++++... ...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCCCCCCccccccCHH
Confidence 6799999999999999999999999999 99999999999888776642 123799999997665442 123444
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCC
Q 012652 80 KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDS 159 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (459)
.++..+...+.+.++++++.+. .++|+||+|.+..|+..+|+++|||++.++++++..+..+.+++.....+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 5555555556677788877653 468999999999999999999999999999999987777766543322222111
Q ss_pred CCCcc-ccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhcc----
Q 012652 160 NGTPI-RKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNM---- 234 (459)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---- 234 (459)
. .+. ..+....+|++++++..+++ .++... . ...++.+.+.......++.+++||+.+||+...+.
T Consensus 161 ~-~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~-----~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 231 (459)
T PLN02448 161 E-LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--S-----RRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK 231 (459)
T ss_pred c-cccccCCccccCCCCCCCChHHCc-hhhcCC--c-----hHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh
Confidence 0 000 11222347888777777766 333221 1 33344455555556778899999999999874433
Q ss_pred -CCccccccccccCCCCCCCCCCC-C-CCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEc
Q 012652 235 -IPELLPVGPLLASNRLGNSAGHF-W-PEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVR 311 (459)
Q Consensus 235 -~p~v~~vGp~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 311 (459)
.++++.|||+............. . +.+.++.+|++..+++++|||||||......+++++++.+|+.++++|||++.
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~ 311 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVAR 311 (459)
T ss_pred cCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 24788899997532110000000 0 12347899999988899999999999888899999999999999999999876
Q ss_pred CCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhc
Q 012652 312 PDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICD 391 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~ 391 (459)
.. ..++.+..++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++
T Consensus 312 ~~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 382 (459)
T PLN02448 312 GE---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVE 382 (459)
T ss_pred Cc---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHH
Confidence 43 124555556789999999999999999999999999999999999999999999999999999999987
Q ss_pred eeeeeeeeecC--CCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhC
Q 012652 392 IWKVGLKLDKD--ESGIITGEEISNKLVQVLGDQ-----NFKARALELKEITMSSVREGGSSYKTFQNFLEWVKT 459 (459)
Q Consensus 392 ~~G~G~~~~~~--~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (459)
.||+|+.+... +...+++++|.++|+++|.++ +||+||++|++.+++++.+||||.+++++||++++.
T Consensus 383 ~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 383 DWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 56999888631 123579999999999999753 799999999999999999999999999999999863
No 12
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-61 Score=474.43 Aligned_cols=437 Identities=27% Similarity=0.455 Sum_probs=324.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC----CCCCCCCC-CCC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP----DGMEPWEE-RTD 77 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~----~~~~~~~~-~~~ 77 (459)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+... ...++++..++ .+++++.. ..+
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 6799999999999999999999999999999999999998877754321 11357766544 13443321 111
Q ss_pred h-HHHHHHHHH---hccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccc
Q 012652 78 P-GKLIEKVLQ---VMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLID 153 (459)
Q Consensus 78 ~-~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~ 153 (459)
. ......+.. .+.+.+.+++..+ . .+|++||+|.+.+|+..+|+++|||++.+++++++.+..+++++...
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~- 159 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM- 159 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc-
Confidence 1 111222222 3344455555442 1 46899999999999999999999999999999999999887754211
Q ss_pred cCCCCCCCCccc-cc--cccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchh
Q 012652 154 DGIIDSNGTPIR-KQ--MIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPG 230 (459)
Q Consensus 154 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 230 (459)
+...-+.. .+ .+..+|+++.++..+++ .++...... ......+.+.......++.+++||+.+||..
T Consensus 160 ----~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 229 (477)
T PLN02863 160 ----PTKINPDDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVEG-----DPAWEFIKDSFRANIASWGLVVNSFTELEGI 229 (477)
T ss_pred ----cccccccccccccccCCCCCCCCcChHhCc-hhhhccCcc-----chHHHHHHHHHhhhccCCEEEEecHHHHHHH
Confidence 10000000 11 12347888888888777 322211111 2223333344444567788999999999987
Q ss_pred hhccC------CccccccccccCCCCCC---CCCC-CCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHh
Q 012652 231 AFNMI------PELLPVGPLLASNRLGN---SAGH-FWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLE 300 (459)
Q Consensus 231 ~~~~~------p~v~~vGp~~~~~~~~~---~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 300 (459)
..+.. ++++.|||++....... ..+. ....++++.+||+..+++++|||||||.+..+.+++.+++.+++
T Consensus 230 ~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~ 309 (477)
T PLN02863 230 YLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLE 309 (477)
T ss_pred HHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHH
Confidence 65543 57899999975321100 0000 01134679999999988999999999999899999999999999
Q ss_pred hCCCCEEEEEcCCCCC-CCCCCCChhHHHHhc-CCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccc
Q 012652 301 ICNRPFLWVVRPDITT-DANDVYPRGFQERVA-TRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 378 (459)
Q Consensus 301 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~-~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~ 378 (459)
.++++|||+++..... .....+|++|.+++. .++++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+
T Consensus 310 ~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 310 KSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred hCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 9999999999743111 112358889987764 45566799999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 379 FVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL-GDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 379 ~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
++||+.||+++++.+|+|+++...+....+.+++.++|+++| ++++||+||+++++.+++++++||||++++++||+++
T Consensus 390 ~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 390 AADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHV 469 (477)
T ss_pred cccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 999999999976547999999532123468999999999999 6789999999999999999999999999999999998
Q ss_pred h
Q 012652 458 K 458 (459)
Q Consensus 458 ~ 458 (459)
+
T Consensus 470 ~ 470 (477)
T PLN02863 470 V 470 (477)
T ss_pred H
Confidence 6
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-61 Score=469.21 Aligned_cols=431 Identities=23% Similarity=0.453 Sum_probs=321.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEE--EeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCC--C
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHG--FRVTF--VNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWE--E 74 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rG--h~Vt~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 74 (459)
|++-||+++|++++||++|++.||+.|+.+| +.||+ ++++.+...+.+......+..+++++..+|++.+... .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 7888999999999999999999999999998 55666 4444333322221111011223699999987654221 1
Q ss_pred C-CChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccc
Q 012652 75 R-TDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLID 153 (459)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~ 153 (459)
. .+....+..+...+...++++++.+.. . .++++||+|.+.+|+..+|+++|||++.+++++++.+..+.+++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR-N-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC-C-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 1 122223333344566777888877532 1 345999999999999999999999999999999999888877653221
Q ss_pred cCCCCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhc
Q 012652 154 DGIIDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFN 233 (459)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 233 (459)
. .+.... .......+|+++.++..+++ .+..... ...+..+.+.......++.+++||+.+||....+
T Consensus 159 ~--~~~~~~--~~~~~v~iPg~p~l~~~dlp-~~~~~~~-------~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~ 226 (451)
T PLN03004 159 T--TPGKNL--KDIPTVHIPGVPPMKGSDMP-KAVLERD-------DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIK 226 (451)
T ss_pred c--cccccc--ccCCeecCCCCCCCChHHCc-hhhcCCc-------hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHH
Confidence 1 000000 11122357889888888887 3332211 2233444455556677889999999999986554
Q ss_pred cC------CccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEE
Q 012652 234 MI------PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFL 307 (459)
Q Consensus 234 ~~------p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 307 (459)
.+ ++++.|||++........ . ...+.++.+||++++++++|||||||...++.+++++++.+|+.++++||
T Consensus 227 ~l~~~~~~~~v~~vGPl~~~~~~~~~-~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~Fl 303 (451)
T PLN03004 227 AITEELCFRNIYPIGPLIVNGRIEDR-N--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFL 303 (451)
T ss_pred HHHhcCCCCCEEEEeeeccCcccccc-c--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 32 479999999753211100 0 12345799999999889999999999999999999999999999999999
Q ss_pred EEEcCCCCCC----CCC-CCChhHHHHhcC-CceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccc
Q 012652 308 WVVRPDITTD----AND-VYPRGFQERVAT-RGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVD 381 (459)
Q Consensus 308 ~~~~~~~~~~----~~~-~~~~~~~~~~~~-nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~D 381 (459)
|+++.....+ ... .+|++|++++.+ |+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|++.|
T Consensus 304 W~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 304 WVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 9998531100 112 288999998865 5566799999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHH
Q 012652 382 QFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYK 448 (459)
Q Consensus 382 Q~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 448 (459)
|+.||+++++.+|+|+.++.++...+++++|.++|+++|.|++||++++++++..+.++++||||++
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred chhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999975379999997421235799999999999999999999999999999999999999864
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.1e-61 Score=475.54 Aligned_cols=439 Identities=29% Similarity=0.507 Sum_probs=315.6
Q ss_pred CC--CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCC--C--CCCeEEEecC---CCCCC
Q 012652 1 MS--SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNY--L--GEQIRLVSIP---DGMEP 71 (459)
Q Consensus 1 m~--~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~--~--~~~~~~~~i~---~~~~~ 71 (459)
|+ +.||+++|++++||++|++.||++|+.|||+|||++++.+...+++.+..... . ...+....+| .++++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 55 67999999999999999999999999999999999999988777665432111 1 1134445555 35554
Q ss_pred CCCCC---------ChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHH
Q 012652 72 WEERT---------DPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASV 142 (459)
Q Consensus 72 ~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~ 142 (459)
+.+.. ....+...+........+.+.+.+++ .+||+||+|.+++|+..+|+++|||++++++++++..
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET---TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc---CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 42111 12233434433222322333333333 6899999999999999999999999999999988776
Q ss_pred HHHhhcccccccCCCCCCCCccccccccccCCCCC---CCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEE
Q 012652 143 ASIFCIPKLIDDGIIDSNGTPIRKQMIQLAPNMLE---MNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQ 219 (459)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (459)
....++........ .+... ....+|+++. ++..+++ ..... ..+........+...+.+.+
T Consensus 158 ~~~~~~~~~~~~~~-----~~~~~-~~~~~pg~p~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~v 221 (482)
T PLN03007 158 CASYCIRVHKPQKK-----VASSS-EPFVIPDLPGDIVITEEQIN-----DADEE-----SPMGKFMKEVRESEVKSFGV 221 (482)
T ss_pred HHHHHHHhcccccc-----cCCCC-ceeeCCCCCCccccCHHhcC-----CCCCc-----hhHHHHHHHHHhhcccCCEE
Confidence 66554321110000 11101 1123566652 2222222 11111 22233333333456788899
Q ss_pred EEcCCccCchhhhccC-----CccccccccccCCCCC--CC-CC-CCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHH
Q 012652 220 FCNSTYELEPGAFNMI-----PELLPVGPLLASNRLG--NS-AG-HFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHN 290 (459)
Q Consensus 220 l~~~~~~l~~~~~~~~-----p~v~~vGp~~~~~~~~--~~-~~-~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~ 290 (459)
++||+.+||.+..+.+ +.+++|||+....... .+ .. ..+..++++.+|+++.+++++|||||||+.....+
T Consensus 222 l~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~ 301 (482)
T PLN03007 222 LVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNE 301 (482)
T ss_pred EEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHH
Confidence 9999999998755554 3688999976432110 00 00 01113467999999988899999999999888899
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCCCC-CCCCCCChhHHHHh-cCCceeecccchhhhhcCCCccceeeccCchhHHHhhh
Q 012652 291 QFQELALGLEICNRPFLWVVRPDITT-DANDVYPRGFQERV-ATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVS 368 (459)
Q Consensus 291 ~~~~~~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~-~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~ 368 (459)
++.+++.+|+.++++|||+++..... +....+|++|.++. +.|+++.+|+||.+||+|+++++||||||+||++||++
T Consensus 302 ~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~ 381 (482)
T PLN03007 302 QLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVA 381 (482)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHH
Confidence 99999999999999999999864211 12235888998875 56677789999999999999999999999999999999
Q ss_pred cCCceeccccccccchhhhhhhceeeeeeeeecC-----CCCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhh
Q 012652 369 NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKD-----ESGIITGEEISNKLVQVLGDQ---NFKARALELKEITMSSV 440 (459)
Q Consensus 369 ~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~-----~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~ 440 (459)
+|||||++|+++||+.||+++++.+++|+.+... +...+++++|.++|+++|.|+ +||+||++|++.+++++
T Consensus 382 ~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~ 461 (482)
T PLN03007 382 AGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAV 461 (482)
T ss_pred cCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887534556554311 125689999999999999887 89999999999999999
Q ss_pred hcCCChHHHHHHHHHHHh
Q 012652 441 REGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 441 ~~~g~~~~~~~~~~~~~~ 458 (459)
.+||||++++++||+.++
T Consensus 462 ~~gGsS~~~l~~~v~~~~ 479 (482)
T PLN03007 462 EEGGSSFNDLNKFMEELN 479 (482)
T ss_pred hCCCcHHHHHHHHHHHHH
Confidence 999999999999999986
No 15
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.8e-61 Score=473.05 Aligned_cols=443 Identities=24% Similarity=0.417 Sum_probs=324.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCcchH-HHHhhhhccCCCCCCeEEEecCCCCCCC-CC-
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHG---FRVTFVNSEYNHK-RVMKSLEGKNYLGEQIRLVSIPDGMEPW-EE- 74 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rG---h~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~i~~~~~~~-~~- 74 (459)
|++.||+++|++++||++|++.||+.|+.+| +.||++++..... .............++++|..+|++..+. ..
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 7788999999999999999999999999998 4567776543221 1111110000112369999998654221 11
Q ss_pred -CCChHHHHHHHHHhccHHHHHHHHHHhCCC---CC-CccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcc
Q 012652 75 -RTDPGKLIEKVLQVMPGKLEELIEEINGRD---DE-KIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIP 149 (459)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~-~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~ 149 (459)
.......+..+...+...+++.++.+..+. +. ++++||+|.+.+|+..+|+++|||++.+++++++.+..+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 112222333344455556677666653210 01 4599999999999999999999999999999998888877665
Q ss_pred cccccCCCCCCCCcc-ccccccccCCC-CCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccC
Q 012652 150 KLIDDGIIDSNGTPI-RKQMIQLAPNM-LEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYEL 227 (459)
Q Consensus 150 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 227 (459)
..... ... ..+. ..+....+|++ +.++..+++ .+..... .+..+.+..+....++.+++||+.+|
T Consensus 161 ~~~~~--~~~-~~~~~~~~~~~~iPgl~~~l~~~dlp-~~~~~~~---------~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 161 ERHRK--TAS-EFDLSSGEEELPIPGFVNSVPTKVLP-PGLFMKE---------SYEAWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred Hhccc--ccc-ccccCCCCCeeECCCCCCCCChhhCc-hhhhCcc---------hHHHHHHHHHhhcccCEeeeccHHHH
Confidence 42211 110 0111 11122347887 457766665 2222111 12233344455677899999999999
Q ss_pred chhhhcc-------CCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHh
Q 012652 228 EPGAFNM-------IPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLE 300 (459)
Q Consensus 228 ~~~~~~~-------~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 300 (459)
|....+. .|+++.|||++........ ......+.++.+||+.++++++|||||||+...+.+++.+++.+++
T Consensus 228 E~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~ 306 (475)
T PLN02167 228 EPNAFDYFSRLPENYPPVYPVGPILSLKDRTSP-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALE 306 (475)
T ss_pred HHHHHHHHHhhcccCCeeEEeccccccccccCC-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 9875543 2789999999864321100 0001123579999999888999999999998889999999999999
Q ss_pred hCCCCEEEEEcCCCCC--CCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccc
Q 012652 301 ICNRPFLWVVRPDITT--DANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 378 (459)
Q Consensus 301 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~ 378 (459)
.++++|||+++..... .....+|++|.+++.+++++++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 307 ~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 307 LVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred hCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccc
Confidence 9999999999753111 11235889999999899999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhh-hhceeeeeeeeecCC----CCcccHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhcCCChHHHHHH
Q 012652 379 FVDQFLNESY-ICDIWKVGLKLDKDE----SGIITGEEISNKLVQVLGDQ-NFKARALELKEITMSSVREGGSSYKTFQN 452 (459)
Q Consensus 379 ~~DQ~~na~r-v~~~~G~G~~~~~~~----~~~~~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 452 (459)
++||+.||++ +++ +|+|+.+.... ...+++++|.++|+++|.++ .||+||+++++.+++++++||||.+++++
T Consensus 387 ~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~ 465 (475)
T PLN02167 387 YAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKR 465 (475)
T ss_pred cccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999987 556 79999986410 13579999999999999765 89999999999999999999999999999
Q ss_pred HHHHHh
Q 012652 453 FLEWVK 458 (459)
Q Consensus 453 ~~~~~~ 458 (459)
||++++
T Consensus 466 ~v~~i~ 471 (475)
T PLN02167 466 FIDDLL 471 (475)
T ss_pred HHHHHH
Confidence 999986
No 16
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-60 Score=461.88 Aligned_cols=435 Identities=25% Similarity=0.436 Sum_probs=328.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHH-hhhhccCCCCCCeEEEecCCCCCCCC-C-CC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKH-GFRVTFVNSEYNHKRVM-KSLEGKNYLGEQIRLVSIPDGMEPWE-E-RT 76 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~ 76 (459)
|.+.||+++|++++||++|++.||+.|+.+ |..|||++++.....+. +..........++++..+|....++. . ..
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 677899999999999999999999999977 99999998876554331 11011000112589988885332211 1 11
Q ss_pred ChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCc-eEEEeCcchhHHHHHhhcccccccC
Q 012652 77 DPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLR-RAVIWTSCAASVASIFCIPKLIDDG 155 (459)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP-~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (459)
+....+......+.+.++++++.+. .++++||+|.+.+|+..+|+++||| .+.+++++++....+.++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~-- 154 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT-- 154 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--
Confidence 3333333444567778888888753 3689999999999999999999999 58888888877767766654221
Q ss_pred CCCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC
Q 012652 156 IIDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI 235 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 235 (459)
..... .....++ ..+|++++++..+++. .+.... ...+..+.+.......++.+++||+.+||....+.+
T Consensus 155 ~~~~~-~~~~~~~-~~vPg~p~l~~~dlp~-~~~~~~-------~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l 224 (470)
T PLN03015 155 VVEGE-YVDIKEP-LKIPGCKPVGPKELME-TMLDRS-------DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAAL 224 (470)
T ss_pred ccccc-cCCCCCe-eeCCCCCCCChHHCCH-hhcCCC-------cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 11110 0011122 3589999888888873 222211 111333334445578899999999999998655433
Q ss_pred -----------CccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCC
Q 012652 236 -----------PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNR 304 (459)
Q Consensus 236 -----------p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (459)
+.++.|||++..... ...++++.+||++++++++|||||||...++.+++.+++.+|+.+++
T Consensus 225 ~~~~~~~~~~~~~v~~VGPl~~~~~~-------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~ 297 (470)
T PLN03015 225 REDMELNRVMKVPVYPIGPIVRTNVH-------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQ 297 (470)
T ss_pred HhhcccccccCCceEEecCCCCCccc-------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCC
Confidence 569999999843211 12234799999999889999999999999999999999999999999
Q ss_pred CEEEEEcCCCC--------CC-CCCCCChhHHHHhcCCcee-ecccchhhhhcCCCccceeeccCchhHHHhhhcCCcee
Q 012652 305 PFLWVVRPDIT--------TD-ANDVYPRGFQERVATRGQM-IGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFL 374 (459)
Q Consensus 305 ~~i~~~~~~~~--------~~-~~~~~~~~~~~~~~~nv~i-~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v 374 (459)
+|||+++.... .. ....+|++|.+++.++..+ .+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 298 ~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v 377 (470)
T PLN03015 298 RFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIV 377 (470)
T ss_pred cEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEE
Confidence 99999964210 00 1225889999998877765 59999999999999999999999999999999999999
Q ss_pred ccccccccchhhhhhhceeeeeeeeec-CCCCcccHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHhhhhcCCChHH
Q 012652 375 CWPYFVDQFLNESYICDIWKVGLKLDK-DESGIITGEEISNKLVQVLG-----DQNFKARALELKEITMSSVREGGSSYK 448 (459)
Q Consensus 375 ~~P~~~DQ~~na~rv~~~~G~G~~~~~-~~~~~~~~~~l~~~i~~ll~-----~~~~~~~a~~l~~~~~~~~~~~g~~~~ 448 (459)
++|+++||+.||+++++.+|+|+.+.. ++...++.++|.++|+++|. ..++|+||++|++.+++++++||||++
T Consensus 378 ~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~ 457 (470)
T PLN03015 378 AWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYN 457 (470)
T ss_pred ecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999999555899999951 11246899999999999994 248999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012652 449 TFQNFLEWVK 458 (459)
Q Consensus 449 ~~~~~~~~~~ 458 (459)
++++|+++++
T Consensus 458 nl~~~~~~~~ 467 (470)
T PLN03015 458 SLFEWAKRCY 467 (470)
T ss_pred HHHHHHHhcc
Confidence 9999998864
No 17
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.6e-60 Score=463.74 Aligned_cols=431 Identities=29% Similarity=0.476 Sum_probs=320.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC----CCCCCCCC-CCC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP----DGMEPWEE-RTD 77 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~----~~~~~~~~-~~~ 77 (459)
+.||+++|++++||++|++.||+.|+.||..|||++++.+...+.+... ....++++..++ ++++++.. ..+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccccc
Confidence 5799999999999999999999999999999999999988766653211 111358888887 56765422 122
Q ss_pred hH----HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccc
Q 012652 78 PG----KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLID 153 (459)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~ 153 (459)
.. ..+....+.+.+.++++++. .++++||+|.+..|+..+|+++|||++.++++++..+..+.+.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 21 23334444566677777766 578999999999999999999999999999999988777654332222
Q ss_pred cCCCCCCCCccccccccccCCC----C--CCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccC
Q 012652 154 DGIIDSNGTPIRKQMIQLAPNM----L--EMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYEL 227 (459)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 227 (459)
.+.... ..+....+|+. + .++..+++ .++...... ......+.+......+++.+++||+.+|
T Consensus 157 ~~~~~~-----~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~gvlvNTf~eL 225 (472)
T PLN02670 157 GGDLRS-----TAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEED-----ETGPSDSVRFGFAIGGSDVVIIRSSPEF 225 (472)
T ss_pred cccCCC-----ccccccCCCCcCCCCccccccHHHhh-HHHhccCcc-----chHHHHHHHHHhhcccCCEEEEeCHHHH
Confidence 222211 11111112332 2 13334444 222211111 1122333344445677899999999999
Q ss_pred chhhhccC-----CccccccccccC-CCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhh
Q 012652 228 EPGAFNMI-----PELLPVGPLLAS-NRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEI 301 (459)
Q Consensus 228 ~~~~~~~~-----p~v~~vGp~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~ 301 (459)
|....+.+ ++++.|||+... .....+.....+..+++.+||++++++++|||||||....+.+++.+++.+|+.
T Consensus 226 E~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~ 305 (472)
T PLN02670 226 EPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEK 305 (472)
T ss_pred hHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 98766653 579999999753 111100000001125799999999889999999999999999999999999999
Q ss_pred CCCCEEEEEcCCCCC-C-CCCCCChhHHHHhcCCceee-cccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccc
Q 012652 302 CNRPFLWVVRPDITT-D-ANDVYPRGFQERVATRGQMI-GWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 378 (459)
Q Consensus 302 ~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~nv~i~-~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~ 378 (459)
++++|||++...... . ....+|++|++++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 306 s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~ 385 (472)
T PLN02670 306 SETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPV 385 (472)
T ss_pred CCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcc
Confidence 999999999853111 1 12358999999987777664 99999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhceeeeeeeeecCC-CCcccHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 012652 379 FVDQFLNESYICDIWKVGLKLDKDE-SGIITGEEISNKLVQVLGDQ---NFKARALELKEITMSSVREGGSSYKTFQNFL 454 (459)
Q Consensus 379 ~~DQ~~na~rv~~~~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (459)
++||+.||+++++ +|+|+.+...+ ...++.++|.++|+++|.|+ +||+||+++++.+++. +.-.+++++|+
T Consensus 386 ~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~ 460 (472)
T PLN02670 386 LNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELV 460 (472)
T ss_pred hhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHH
Confidence 9999999999998 79999996421 23589999999999999776 7999999999999974 77789999999
Q ss_pred HHHh
Q 012652 455 EWVK 458 (459)
Q Consensus 455 ~~~~ 458 (459)
+.++
T Consensus 461 ~~l~ 464 (472)
T PLN02670 461 HYLR 464 (472)
T ss_pred HHHH
Confidence 9876
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-60 Score=462.90 Aligned_cols=411 Identities=26% Similarity=0.446 Sum_probs=305.8
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEec--C--CCCCCCCC-
Q 012652 1 MS-SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSI--P--DGMEPWEE- 74 (459)
Q Consensus 1 m~-~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i--~--~~~~~~~~- 74 (459)
|+ +.||+++|++++||++|++.||+.|+.+||+|||++++.+...+.+.+. ...++++..+ + ++++++..
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCccCCCCCccc
Confidence 77 7799999999999999999999999999999999999888777655321 1124555544 3 45655422
Q ss_pred CCChHHHHH-HH---HHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhccc
Q 012652 75 RTDPGKLIE-KV---LQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPK 150 (459)
Q Consensus 75 ~~~~~~~~~-~~---~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~ 150 (459)
..++...+. .+ ...+.+.++++++. .++|+||+| +..|+..+|..+|||++.+++++++.+. +.+++.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 222221111 22 22334445555544 689999999 5789999999999999999999988654 444321
Q ss_pred ccccCCCCCCCCccccccccccCCCCC----CCcccccccccCCcccccchhhhHHHHHHHHHH-HhhccCCEEEEcCCc
Q 012652 151 LIDDGIIDSNGTPIRKQMIQLAPNMLE----MNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTI-KAMKVADFQFCNSTY 225 (459)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 225 (459)
+..+ ..+|++|. ++..+++ .+ . .. ...+..+.... +....++.+++||+.
T Consensus 149 ----~~~~-----------~~~pglp~~~~~~~~~~~~-~~--~--~~-----~~~~~~~~~~~~~~~~~~~~vl~Ntf~ 203 (442)
T PLN02208 149 ----GKLG-----------VPPPGYPSSKVLFRENDAH-AL--A--TL-----SIFYKRLYHQITTGLKSCDVIALRTCK 203 (442)
T ss_pred ----cccC-----------CCCCCCCCcccccCHHHcC-cc--c--cc-----chHHHHHHHHHHhhhccCCEEEEECHH
Confidence 1000 01355553 2333443 11 1 11 22233333222 345678999999999
Q ss_pred cCchhhhcc-----CCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHh
Q 012652 226 ELEPGAFNM-----IPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLE 300 (459)
Q Consensus 226 ~l~~~~~~~-----~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 300 (459)
+||....+. .|+++.|||++...... .+.++++.+||+.++++++|||||||...++.+++.+++.+++
T Consensus 204 eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~ 277 (442)
T PLN02208 204 EIEGKFCDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGME 277 (442)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHH
Confidence 999865543 37899999998653211 1356789999999888999999999999889999999999988
Q ss_pred hCCCCEEEEEcCCCCC-CCCCCCChhHHHHhcC-CceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccc
Q 012652 301 ICNRPFLWVVRPDITT-DANDVYPRGFQERVAT-RGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 378 (459)
Q Consensus 301 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~ 378 (459)
..+.+++|+++..... .....+|++|++++.+ |+.+.+|+||.+||+|+++++|||||||||++||+++|||+|++|+
T Consensus 278 ~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~ 357 (442)
T PLN02208 278 LTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPF 357 (442)
T ss_pred hCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCc
Confidence 8889999998753111 1224689999988754 5555599999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 012652 379 FVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ-----NFKARALELKEITMSSVREGGSSYKTFQNF 453 (459)
Q Consensus 379 ~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 453 (459)
++||+.||+++++.+|+|+.++.++.+.+++++|.++|+++|+++ .+|++++++++.+.+ +|||.+++++|
T Consensus 358 ~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~ 433 (442)
T PLN02208 358 LSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKF 433 (442)
T ss_pred chhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHH
Confidence 999999999876547999999742112389999999999999764 499999999999853 68999999999
Q ss_pred HHHHh
Q 012652 454 LEWVK 458 (459)
Q Consensus 454 ~~~~~ 458 (459)
|++++
T Consensus 434 v~~l~ 438 (442)
T PLN02208 434 VEELQ 438 (442)
T ss_pred HHHHH
Confidence 99986
No 19
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.7e-60 Score=461.48 Aligned_cols=438 Identities=29% Similarity=0.534 Sum_probs=319.6
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC-----CCCCCCCC
Q 012652 1 MS-SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP-----DGMEPWEE 74 (459)
Q Consensus 1 m~-~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~ 74 (459)
|+ +.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+...........+++..++ ++++++..
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 45 4699999999999999999999999999999999999988766654321111111248888887 57765522
Q ss_pred C-CCh--HHHHHHHH---HhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhc
Q 012652 75 R-TDP--GKLIEKVL---QVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCI 148 (459)
Q Consensus 75 ~-~~~--~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~ 148 (459)
. .+. ..+...+. ..+.+.+++++... . .+|++||+|.+.+|+..+|+++|||++.+++++++....+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~-~---~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA-K---PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc-C---CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 1 111 12333222 23455666666542 1 4689999999999999999999999999999999887765432
Q ss_pred ccccccCCCCCCCCccccccccccCCCCC---CCcccccccccCCcccccchhhhHHHHHHHHHHHh-hccCCEEEEcCC
Q 012652 149 PKLIDDGIIDSNGTPIRKQMIQLAPNMLE---MNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKA-MKVADFQFCNST 224 (459)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 224 (459)
.... +... .+. .+....+|++++ ++..+++ ..+..... ...+...... ...++.+++||+
T Consensus 161 ~~~~--~~~~---~~~-~~~~~~iPg~p~~~~l~~~dlp-~~~~~~~~---------~~~~~~~~~~~~~~a~~vlvNTf 224 (491)
T PLN02534 161 RLHN--AHLS---VSS-DSEPFVVPGMPQSIEITRAQLP-GAFVSLPD---------LDDVRNKMREAESTAFGVVVNSF 224 (491)
T ss_pred HHhc--cccc---CCC-CCceeecCCCCccccccHHHCC-hhhcCccc---------HHHHHHHHHhhcccCCEEEEecH
Confidence 1111 0000 111 112234677763 5555555 22211111 1222222222 245678999999
Q ss_pred ccCchhhhccC-----CccccccccccCCCCCCCC---CCCCC-CCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHH
Q 012652 225 YELEPGAFNMI-----PELLPVGPLLASNRLGNSA---GHFWP-EDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQEL 295 (459)
Q Consensus 225 ~~l~~~~~~~~-----p~v~~vGp~~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 295 (459)
.+||+...+.+ ++++.|||++.......+. +.... .++++..||++++++++|||||||......+++.++
T Consensus 225 ~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~ 304 (491)
T PLN02534 225 NELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIEL 304 (491)
T ss_pred HHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHH
Confidence 99998655432 5799999997532110000 00011 235799999999889999999999999999999999
Q ss_pred HHHHhhCCCCEEEEEcCCCCC-C-CCCCCChhHHHHh-cCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCc
Q 012652 296 ALGLEICNRPFLWVVRPDITT-D-ANDVYPRGFQERV-ATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIP 372 (459)
Q Consensus 296 ~~a~~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~-~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP 372 (459)
+.+|+.++++|||+++..... + ....+|++|.+++ +.++++.+|+||.+||+|+++++||||||+||++||+++|||
T Consensus 305 a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 305 GLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred HHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 999999999999999843110 1 1113678998775 466667799999999999999999999999999999999999
Q ss_pred eeccccccccchhhhhhhceeeeeeeeecC-------CC--C-cccHHHHHHHHHHHhC---C--HHHHHHHHHHHHHHH
Q 012652 373 FLCWPYFVDQFLNESYICDIWKVGLKLDKD-------ES--G-IITGEEISNKLVQVLG---D--QNFKARALELKEITM 437 (459)
Q Consensus 373 ~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~-------~~--~-~~~~~~l~~~i~~ll~---~--~~~~~~a~~l~~~~~ 437 (459)
+|++|++.||+.||+++++.||+|+++..+ +. + ..++++|.++|+++|. + .++|+||++|++.++
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 999999999999999998768999988421 00 1 3799999999999995 2 479999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHh
Q 012652 438 SSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 438 ~~~~~~g~~~~~~~~~~~~~~ 458 (459)
+++.+||||.+++++||++++
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVL 485 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHH
Confidence 999999999999999999986
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-59 Score=453.94 Aligned_cols=415 Identities=27% Similarity=0.442 Sum_probs=311.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC--CCCCCCCC-CCChH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP--DGMEPWEE-RTDPG 79 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~--~~~~~~~~-~~~~~ 79 (459)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+. ...+....+.+..+| ++++++.+ ..++.
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 78999999999999999999999999999999999998876665432 100111237777777 66665522 11111
Q ss_pred -HHHHHH---HHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccC
Q 012652 80 -KLIEKV---LQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDG 155 (459)
Q Consensus 80 -~~~~~~---~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (459)
.....+ ...+.+.++++++. .+||+||+|. ..|+..+|+++|||++.++++++..+..+.+ + .+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~ 150 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GG 150 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cc
Confidence 112222 22345667777766 5789999995 7799999999999999999999987777642 1 11
Q ss_pred CCCCCCCccccccccccCCCCC----CCcccccccccC--CcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCch
Q 012652 156 IIDSNGTPIRKQMIQLAPNMLE----MNTEEFFWTRLG--DITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEP 229 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 229 (459)
.++ ..+|++|. ++..+++. +.. ..... ........+.......++.+++||+.+||.
T Consensus 151 ~~~-----------~~~pglp~~~v~l~~~~l~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~ 213 (453)
T PLN02764 151 ELG-----------VPPPGYPSSKVLLRKQDAYT-MKNLEPTNTI-----DVGPNLLERVTTSLMNSDVIAIRTAREIEG 213 (453)
T ss_pred cCC-----------CCCCCCCCCcccCcHhhCcc-hhhcCCCccc-----hhHHHHHHHHHHhhccCCEEEEeccHHhhH
Confidence 110 11255552 44444442 111 10111 122223333335567788999999999998
Q ss_pred hhhccC-----CccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCC
Q 012652 230 GAFNMI-----PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNR 304 (459)
Q Consensus 230 ~~~~~~-----p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 304 (459)
...+.. ++++.|||++...... ...++++.+|||+++++++|||||||......+++.+++.+|+..+.
T Consensus 214 ~~~~~~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~ 287 (453)
T PLN02764 214 NFCDYIEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGS 287 (453)
T ss_pred HHHHHHHhhcCCcEEEeccCccCcccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 766554 5699999997543111 12356899999999999999999999988999999999999999999
Q ss_pred CEEEEEcCCCCC-CCCCCCChhHHHHhcCCceee-cccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccccccc
Q 012652 305 PFLWVVRPDITT-DANDVYPRGFQERVATRGQMI-GWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQ 382 (459)
Q Consensus 305 ~~i~~~~~~~~~-~~~~~~~~~~~~~~~~nv~i~-~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ 382 (459)
+|+|+++..... .....+|++|++++.++..++ +|+||.+||+|+++++||||||+||++||+++|||+|++|++.||
T Consensus 288 pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ 367 (453)
T PLN02764 288 PFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQ 367 (453)
T ss_pred CeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccch
Confidence 999999853211 123469999999987776665 999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 383 FLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ-----NFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 383 ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
+.||+++++.+|+|+.+..++...++.++|.++|+++|+++ .+|++++++++.+++ +|||.+++++||+++
T Consensus 368 ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~ 443 (453)
T PLN02764 368 VLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESL 443 (453)
T ss_pred HHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Confidence 99999996437999988532113589999999999999764 399999999999965 799999999999998
Q ss_pred h
Q 012652 458 K 458 (459)
Q Consensus 458 ~ 458 (459)
.
T Consensus 444 ~ 444 (453)
T PLN02764 444 Q 444 (453)
T ss_pred H
Confidence 5
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.2e-58 Score=448.25 Aligned_cols=412 Identities=27% Similarity=0.450 Sum_probs=303.1
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC----CCCCCCCC-
Q 012652 1 MS-SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP----DGMEPWEE- 74 (459)
Q Consensus 1 m~-~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~----~~~~~~~~- 74 (459)
|. +.||+++|++++||++|++.||+.|+.+|++|||++++.+...+.+... ...++++..++ ++++++..
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcCCCCCcccc
Confidence 55 7899999999999999999999999999999999999887766654321 11247775443 56665421
Q ss_pred CCChHH-HHHHHHH---hccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhccc
Q 012652 75 RTDPGK-LIEKVLQ---VMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPK 150 (459)
Q Consensus 75 ~~~~~~-~~~~~~~---~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~ 150 (459)
..++.. ....+.. ...+.++++++. .+||+||+|. .+|+..+|+++|||++.++++++..+..+.+ +.
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~ 148 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR 148 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH
Confidence 122211 1112222 223334444433 6789999995 7899999999999999999999988777654 11
Q ss_pred ccccCCCCCCCCccccccccccCCCCC----CCcccccc-cccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCc
Q 012652 151 LIDDGIIDSNGTPIRKQMIQLAPNMLE----MNTEEFFW-TRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTY 225 (459)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (459)
... + ..+|++|. ++..+... .++ ......+.+......+++.+++||+.
T Consensus 149 -~~~------~--------~~~pg~p~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~vlvNTf~ 202 (446)
T PLN00414 149 -AEL------G--------FPPPDYPLSKVALRGHDANVCSLF-----------ANSHELFGLITKGLKNCDVVSIRTCV 202 (446)
T ss_pred -hhc------C--------CCCCCCCCCcCcCchhhcccchhh-----------cccHHHHHHHHHhhccCCEEEEechH
Confidence 000 0 01244442 11111110 001 00112233334456678999999999
Q ss_pred cCchhhhccC-----CccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHh
Q 012652 226 ELEPGAFNMI-----PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLE 300 (459)
Q Consensus 226 ~l~~~~~~~~-----p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 300 (459)
+||....+.+ ++++.|||+........ . ...++++.+|||.+++++||||||||......+++.+++.+++
T Consensus 203 eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~--~--~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~ 278 (446)
T PLN00414 203 ELEGNLCDFIERQCQRKVLLTGPMLPEPQNKS--G--KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGME 278 (446)
T ss_pred HHHHHHHHHHHHhcCCCeEEEcccCCCccccc--C--cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 9998766543 46889999975331110 0 1234579999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEcCCCCC-CCCCCCChhHHHHhcCCceee-cccchhhhhcCCCccceeeccCchhHHHhhhcCCceecccc
Q 012652 301 ICNRPFLWVVRPDITT-DANDVYPRGFQERVATRGQMI-GWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY 378 (459)
Q Consensus 301 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~nv~i~-~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~ 378 (459)
..+.+|+|++...... .....+|++|++++.++.+++ +|+||.+||+|+++++|||||||||++||+++|||+|++|+
T Consensus 279 ~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~ 358 (446)
T PLN00414 279 LTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQ 358 (446)
T ss_pred HcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCc
Confidence 9999999999753111 122468999999998888876 99999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 012652 379 FVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ-----NFKARALELKEITMSSVREGGSSYKTFQNF 453 (459)
Q Consensus 379 ~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 453 (459)
+.||+.||+++++.+|+|+.+..++...+++++|.++++++|.++ ++|++++++++.+.+ +||++ ..+++|
T Consensus 359 ~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~ 434 (446)
T PLN00414 359 LADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKF 434 (446)
T ss_pred ccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHH
Confidence 999999999996437999999642112589999999999999764 399999999999754 46634 448999
Q ss_pred HHHHh
Q 012652 454 LEWVK 458 (459)
Q Consensus 454 ~~~~~ 458 (459)
|++++
T Consensus 435 v~~~~ 439 (446)
T PLN00414 435 VEALE 439 (446)
T ss_pred HHHHH
Confidence 99885
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-51 Score=407.06 Aligned_cols=391 Identities=18% Similarity=0.259 Sum_probs=271.1
Q ss_pred CCEEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCC-------CCC
Q 012652 3 SPHILVF-STPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEP-------WEE 74 (459)
Q Consensus 3 ~~~il~~-~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~ 74 (459)
.+||+.+ |.++.||+.-+..|+++|++|||+||++++..... .... ...+++...++...+. ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4688855 77899999999999999999999999998753211 1000 0125555444310000 000
Q ss_pred C---C---Ch----HHHHHHHHHhccHHHH--HHHHHHhCCCCCCccEEEeCCCcchHHHHHHHc-CCceEEEeCcchhH
Q 012652 75 R---T---DP----GKLIEKVLQVMPGKLE--ELIEEINGRDDEKIDCFISDGFMGWSMEVAEKM-KLRRAVIWTSCAAS 141 (459)
Q Consensus 75 ~---~---~~----~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~-giP~i~~~~~~~~~ 141 (459)
. . +. ......+...|+..+. ++.+.|+.. +.++|++|+|.+..|+..+|+++ ++|.|.++++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANK-NNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcC-CCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 0 0 00 0111122333433331 233333311 17899999999888999999999 99988877754432
Q ss_pred HHHHhhcccccccCCCCCCCCccccccccccCCC-----CCCCcccccccccCCcccc----c-chhhhHHHHHH-HH--
Q 012652 142 VASIFCIPKLIDDGIIDSNGTPIRKQMIQLAPNM-----LEMNTEEFFWTRLGDITTQ----K-MTSQKIIFDLS-IR-- 208 (459)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~-~~-- 208 (459)
...... | |.|. ++.++|.. ..+++.+...+++...... . ++.++.+++.. .+
T Consensus 172 ~~~~~~-------g-----g~p~---~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~ 236 (507)
T PHA03392 172 ENFETM-------G-----AVSR---HPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDT 236 (507)
T ss_pred hHHHhh-------c-----cCCC---CCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCC
Confidence 221110 1 0111 11222222 2344343333322110000 0 01112222221 11
Q ss_pred --HHHhhccCCEEEEcCCccCchhhhccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcc-
Q 012652 209 --TIKAMKVADFQFCNSTYELEPGAFNMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHT- 285 (459)
Q Consensus 209 --~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~- 285 (459)
..+-..+.+++|+|+.+.++++ ++++|++++|||++.+.... .+.++++.+|+++.+ +++|||||||..
T Consensus 237 ~~~~~l~~~~~l~lvns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~~-~g~V~vS~GS~~~ 308 (507)
T PHA03392 237 PTIRELRNRVQLLFVNVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNST-NGVVYVSFGSSID 308 (507)
T ss_pred CCHHHHHhCCcEEEEecCccccCC-CCCCCCeeeecccccCCCCC------CCCCHHHHHHHhcCC-CcEEEEECCCCCc
Confidence 1122367789999999999999 89999999999998754221 257889999998864 689999999985
Q ss_pred --cCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhH
Q 012652 286 --VLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNST 363 (459)
Q Consensus 286 --~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~ 363 (459)
..+.+.++.+++|+++++++|||++++.. .+ ...|+|+++.+|+||.+||+|+.+++||||||+||+
T Consensus 309 ~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-------~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~ 377 (507)
T PHA03392 309 TNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-------EA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQST 377 (507)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-------Cc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccH
Confidence 35788999999999999999999997541 11 124688999999999999999999999999999999
Q ss_pred HHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 012652 364 MEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSS 439 (459)
Q Consensus 364 ~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~ 439 (459)
.||+++|||+|++|+++||+.||+|+++ +|+|+.++. ..+++++|.++|+++|+|++||+||+++++.+++.
T Consensus 378 ~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 378 DEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ 449 (507)
T ss_pred HHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999 699999985 78999999999999999999999999999999973
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=8.5e-52 Score=417.21 Aligned_cols=377 Identities=26% Similarity=0.361 Sum_probs=230.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCC---CCh---
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEER---TDP--- 78 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~--- 78 (459)
|||++|. ++||+.++..|+++|++|||+||++++.... .+.... ...+++..++...+..+.. ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSK------PSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccc------ccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888884 7899999999999999999999999874322 222111 1356666666544433211 110
Q ss_pred -----------HHHHHH-------HHHhccHHH--HHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcc
Q 012652 79 -----------GKLIEK-------VLQVMPGKL--EELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSC 138 (459)
Q Consensus 79 -----------~~~~~~-------~~~~~~~~~--~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~ 138 (459)
...... +...|+..+ .++++.+++ .++|++|+|.+..|+..+|+.+|+|.+.+.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 000100 111221111 122333333 689999999998899999999999998654332
Q ss_pred hhHHHHHhhcccccccCCCCCC-CCccccccccccCCC-----CCCCcccccccccCCcccccchhhhHHHHHHH-----
Q 012652 139 AASVASIFCIPKLIDDGIIDSN-GTPIRKQMIQLAPNM-----LEMNTEEFFWTRLGDITTQKMTSQKIIFDLSI----- 207 (459)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 207 (459)
..... .... |.+. ++.++|.. ..+...+...+.+..... +.+...+.
T Consensus 151 ~~~~~-------------~~~~~g~p~---~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~------~~~~~~~~~~~~~ 208 (500)
T PF00201_consen 151 PMYDL-------------SSFSGGVPS---PPSYVPSMFSDFSDRMSFWQRIKNFLFYLYF------RFIFRYFFSPQDK 208 (500)
T ss_dssp SCSCC-------------TCCTSCCCT---STTSTTCBCCCSGTTSSSST--TTSHHHHHH------HHHHHHGGGS-TT
T ss_pred ccchh-------------hhhccCCCC---ChHHhccccccCCCccchhhhhhhhhhhhhh------ccccccchhhHHH
Confidence 21000 0000 1111 11122221 112222111111100000 00111110
Q ss_pred ----------HHHHhhccCCEEEEcCCccCchhhhccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEE
Q 012652 208 ----------RTIKAMKVADFQFCNSTYELEPGAFNMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVI 277 (459)
Q Consensus 208 ----------~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 277 (459)
...+.+.+.+++++|+.+.+++| ++.+|++++||+++.+..+ +.+.++.+|++...++++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~--------~l~~~~~~~~~~~~~~~vv 279 (500)
T PF00201_consen 209 LYKKYFGFPFSFRELLSNASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAK--------PLPEELWNFLDSSGKKGVV 279 (500)
T ss_dssp S-EEESS-GGGCHHHHHHHHHCCSSTEEE-----HHHHCTSTTGCGC-S------------TCHHHHHHHTSTTTTTEEE
T ss_pred HHhhhcccccccHHHHHHHHHHhhhccccCcCC-cchhhcccccCcccccccc--------ccccccchhhhccCCCCEE
Confidence 01122345678999999999999 8999999999999876543 4678889999985568999
Q ss_pred EEEeCCcccC-CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceee
Q 012652 278 YVAFGSHTVL-DHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLS 356 (459)
Q Consensus 278 ~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~ 356 (459)
||||||.... +.+..+.++++|++++++|||++.+. +.. ..++|+++.+|+||.+||.|+++++|||
T Consensus 280 ~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~---------~~~---~l~~n~~~~~W~PQ~~lL~hp~v~~fit 347 (500)
T PF00201_consen 280 YVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE---------PPE---NLPKNVLIVKWLPQNDLLAHPRVKLFIT 347 (500)
T ss_dssp EEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS---------HGC---HHHTTEEEESS--HHHHHTSTTEEEEEE
T ss_pred EEecCcccchhHHHHHHHHHHHHhhCCCccccccccc---------ccc---cccceEEEeccccchhhhhcccceeeee
Confidence 9999998653 44458899999999999999999753 112 3478999999999999999999999999
Q ss_pred ccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 012652 357 HCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEIT 436 (459)
Q Consensus 357 HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 436 (459)
|||+||+.||+++|||+|++|+++||+.||+++++ .|+|+.++. ..+|.++|.++|+++|+|++|++||+++++.+
T Consensus 348 HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~ 423 (500)
T PF00201_consen 348 HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLF 423 (500)
T ss_dssp S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTT
T ss_pred ccccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 699999995 88999999999999999999999999999999
Q ss_pred Hhh
Q 012652 437 MSS 439 (459)
Q Consensus 437 ~~~ 439 (459)
++.
T Consensus 424 ~~~ 426 (500)
T PF00201_consen 424 RDR 426 (500)
T ss_dssp T--
T ss_pred hcC
Confidence 864
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.2e-45 Score=357.18 Aligned_cols=378 Identities=19% Similarity=0.287 Sum_probs=265.8
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCC-----CChHHHHHH
Q 012652 10 STPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEER-----TDPGKLIEK 84 (459)
Q Consensus 10 ~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~ 84 (459)
.+|+.||++|++.||++|+++||+|+|++++.+.+.+++. |+.+..++...+..... .+.....+.
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIEK 72 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHHH
Confidence 5789999999999999999999999999999999999887 88888887554331110 233445555
Q ss_pred HHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCCCcc
Q 012652 85 VLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGTPI 164 (459)
Q Consensus 85 ~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (459)
+...+...+..+.+.+++ .+||+||+|.+.+++..+|+.+|||+|.+.+.+... ..++... .+
T Consensus 73 ~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~---------~~- 135 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV---------SP- 135 (392)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc---------cc-
Confidence 555555556666666555 899999999988899999999999999876443210 0000000 00
Q ss_pred ccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHH-H--HHHh--hccCCEEEEcCCccCchhhhccCCccc
Q 012652 165 RKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSI-R--TIKA--MKVADFQFCNSTYELEPGAFNMIPELL 239 (459)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~--~~~~~~~l~~~~~~l~~~~~~~~p~v~ 239 (459)
..+.+ +...... ......... ..+.+.+... + .... ....+..+..+.+.|+++...++++++
T Consensus 136 ------~~~~~--~~~~~~~-~~~~~~~~~---~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 203 (392)
T TIGR01426 136 ------AGEGS--AEEGAIA-ERGLAEYVA---RLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFT 203 (392)
T ss_pred ------cchhh--hhhhccc-cchhHHHHH---HHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeE
Confidence 00000 0000000 000000000 0000111000 0 0011 123345778888888877567788999
Q ss_pred cccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCC
Q 012652 240 PVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDAN 319 (459)
Q Consensus 240 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 319 (459)
+|||+....... .+|.....++++||||+||+.....+++..+++++.+.+.+++|..+....
T Consensus 204 ~~Gp~~~~~~~~-------------~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~---- 266 (392)
T TIGR01426 204 FVGPCIGDRKED-------------GSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD---- 266 (392)
T ss_pred EECCCCCCcccc-------------CCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----
Confidence 999987643211 135555566889999999986666678899999999999999988865411
Q ss_pred CCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeee
Q 012652 320 DVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKL 399 (459)
Q Consensus 320 ~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~ 399 (459)
.+. .+..++|+.+.+|+||.++|+++++ ||||||+||+.||+++|||+|++|...||+.||.++++ +|+|+.+
T Consensus 267 ---~~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l 339 (392)
T TIGR01426 267 ---PAD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHL 339 (392)
T ss_pred ---hhH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEe
Confidence 011 1224678999999999999999888 99999999999999999999999999999999999999 7999998
Q ss_pred ecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 400 DKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 400 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
.. ..+++++|.++|.++|+|++|+++++++++.+++. +...++.+.+.+.
T Consensus 340 ~~---~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~----~~~~~aa~~i~~~ 389 (392)
T TIGR01426 340 PP---EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA----GGARRAADEIEGF 389 (392)
T ss_pred cc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHh
Confidence 74 67899999999999999999999999999999874 4444444444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.4e-44 Score=355.10 Aligned_cols=378 Identities=14% Similarity=0.124 Sum_probs=261.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCC----C-----
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWE----E----- 74 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~----~----- 74 (459)
|||+|++.++.||++|++.||++|++|||+|+|++++.+...+++. |++|..++....... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6999999999999999999999999999999999999988888876 888888875432210 0
Q ss_pred ---CCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccc
Q 012652 75 ---RTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKL 151 (459)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~ 151 (459)
..........+...+...++++.+.+++ .+||+||+|.+..++..+|+++|||++.+++++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc-------
Confidence 0112233444555556667777777665 899999999988889999999999999998876531000
Q ss_pred cccCCCCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhc---------cCCEEEEc
Q 012652 152 IDDGIIDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMK---------VADFQFCN 222 (459)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~ 222 (459)
.+. .. ... ....+......... ........+..+.+. ..+..+..
T Consensus 142 ---------------~~~-~~---~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 195 (401)
T cd03784 142 ---------------FPP-PL---GRA--NLRLYALLEAELWQ-----DLLGAWLRARRRRLGLPPLSLLDGSDVPELYG 195 (401)
T ss_pred ---------------CCC-cc---chH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCcccccCCCcEEEe
Confidence 000 00 000 00000000000000 111111111111111 12334444
Q ss_pred CCccCchhhhccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCC-HHHHHHHHHHHhh
Q 012652 223 STYELEPGAFNMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLD-HNQFQELALGLEI 301 (459)
Q Consensus 223 ~~~~l~~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~ 301 (459)
..+.+.++..++.++..++|......... ...+.++..|++. ++++|||++||..... .+.+..++++++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~ 267 (401)
T cd03784 196 FSPAVLPPPPDWPRFDLVTGYGFRDVPYN------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVAT 267 (401)
T ss_pred cCcccCCCCCCccccCcEeCCCCCCCCCC------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHH
Confidence 44444444466777778886333322211 2345667788765 4679999999986544 4577889999998
Q ss_pred CCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccc
Q 012652 302 CNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVD 381 (459)
Q Consensus 302 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~D 381 (459)
.+.++||+.+.... .. ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|...|
T Consensus 268 ~~~~~i~~~g~~~~----~~------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~d 335 (401)
T cd03784 268 LGQRAILSLGWGGL----GA------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGD 335 (401)
T ss_pred cCCeEEEEccCccc----cc------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCC
Confidence 89999999876511 11 124688999999999999999888 9999999999999999999999999999
Q ss_pred cchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 382 QFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 382 Q~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
|+.||+++++ +|+|+.+.. ..+++++|.+++++++++ .++++++++++.+++. .+...+.++|+.
T Consensus 336 Q~~~a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~~-----~g~~~~~~~ie~ 400 (401)
T cd03784 336 QPFWAARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLRRIREE-----DGVPSAADVIER 400 (401)
T ss_pred cHHHHHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHhc-----cCHHHHHHHHhh
Confidence 9999999999 799999975 568999999999999985 4666777777777642 333555555553
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-42 Score=335.45 Aligned_cols=385 Identities=19% Similarity=0.210 Sum_probs=254.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCC---CCCChH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWE---ERTDPG 79 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~ 79 (459)
+|||+|+..++.||++|+++||++|.++||+|+|++++.+.+.+++. ++.|..++....... ......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 58999999999999999999999999999999999999999999998 666666654311111 111111
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHh-hcccccccCCCC
Q 012652 80 KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIF-CIPKLIDDGIID 158 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~-~~~~~~~~~~~~ 158 (459)
+..............++++.+++ ..||+++.|...+.+ .++...++|++.............. +.+.....+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKL- 146 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccccc-
Confidence 11111222233344555555555 899999999876655 8899999999976555443211111 00000000000
Q ss_pred CCCCccccccccccCCCCCCCc-ccccccccCCcccccchhhhHHHHHHHH-------HHHhhccC-CEEEEcCCccCch
Q 012652 159 SNGTPIRKQMIQLAPNMLEMNT-EEFFWTRLGDITTQKMTSQKIIFDLSIR-------TIKAMKVA-DFQFCNSTYELEP 229 (459)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~l~~~~~~l~~ 229 (459)
.....+-++.... ......+. . ....+.... ..+.+... ...+......+.+
T Consensus 147 ---------~~~~~~~~~~~~~~~~~~~~~~----~------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (406)
T COG1819 147 ---------PIPLYPLPPRLVRPLIFARSWL----P------KLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPP 207 (406)
T ss_pred ---------cccccccChhhccccccchhhh----h------hhhhhhhccccccccchHHHhcCCCCccccccccccCC
Confidence 0000000000000 00000000 0 000000000 01111112 2222222222221
Q ss_pred hhhccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEE
Q 012652 230 GAFNMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWV 309 (459)
Q Consensus 230 ~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 309 (459)
. .+.+....++||+....... ...| ...++++||+|+||.... .++++.+++++++++.++|+.
T Consensus 208 ~-~~~p~~~~~~~~~~~~~~~~------------~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~ 271 (406)
T COG1819 208 G-DRLPFIGPYIGPLLGEAANE------------LPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVS 271 (406)
T ss_pred C-CCCCCCcCcccccccccccc------------Ccch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEe
Confidence 1 23344566677777665432 1223 234578999999998766 889999999999999999998
Q ss_pred EcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhh
Q 012652 310 VRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYI 389 (459)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv 389 (459)
.+.. .. +.. .+++|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|+
T Consensus 272 ~~~~-~~-~~~--------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv 339 (406)
T COG1819 272 LGGA-RD-TLV--------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV 339 (406)
T ss_pred cccc-cc-ccc--------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH
Confidence 8652 10 112 24678999999999999999998 999999999999999999999999999999999999
Q ss_pred hceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 390 CDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 390 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
++ +|+|+.+.. +.++.+.|+++|+++|.|++|+++++++++.+++. +| .+.+.+.++.+
T Consensus 340 e~-~G~G~~l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~ 398 (406)
T COG1819 340 EE-LGAGIALPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEEF 398 (406)
T ss_pred HH-cCCceecCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHH
Confidence 99 799999985 78999999999999999999999999999999985 33 56666666654
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.1e-42 Score=346.93 Aligned_cols=407 Identities=29% Similarity=0.414 Sum_probs=259.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhcc-C--CCCCCeEEEecCCCCCCCCCCC--C
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGK-N--YLGEQIRLVSIPDGMEPWEERT--D 77 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~-~--~~~~~~~~~~i~~~~~~~~~~~--~ 77 (459)
+.++++++++++||++|+..+|+.|+++||+||++++.............. . .....+.+...+++++...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 457788888899999999999999999999999999876655443210000 0 0001111111122222221111 1
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcC-CceEEEeCcchhHHHHHhhcccccccCC
Q 012652 78 PGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMK-LRRAVIWTSCAASVASIFCIPKLIDDGI 156 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~g-iP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (459)
.......+...|...+++....+......++|++|+|.+..+...+|...+ |+..++.+..........+.+.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~----~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS----Y 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----c
Confidence 111234445556666666444443322144999999998666776776665 88888877777654443322211 1
Q ss_pred CCCCCCccccccccccCCCCCCCcccccccccCCcccc---cch----hhhHHHHHHHH------HH-HhhccCCEEEEc
Q 012652 157 IDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQ---KMT----SQKIIFDLSIR------TI-KAMKVADFQFCN 222 (459)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~------~~-~~~~~~~~~l~~ 222 (459)
.+....+.. . ..+.......+........ .+. +.........+ .. .-..+.+..+++
T Consensus 161 ~p~~~~~~~--------~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln 231 (496)
T KOG1192|consen 161 VPSPFSLSS--------G-DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLN 231 (496)
T ss_pred cCcccCccc--------c-ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEc
Confidence 110000000 0 0011111110000000000 000 00000001000 01 223567799999
Q ss_pred CCccCchhhhccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCC--CeEEEEEeCCcc---cCCHHHHHHHHH
Q 012652 223 STYELEPGAFNMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQP--KSVIYVAFGSHT---VLDHNQFQELAL 297 (459)
Q Consensus 223 ~~~~l~~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~v~vs~Gs~~---~~~~~~~~~~~~ 297 (459)
+.+.+++..++..+++++|||+....... +. ....+|++..+. .++|||||||+. .++.++...++.
T Consensus 232 ~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~ 303 (496)
T KOG1192|consen 232 SNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------KS--PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAK 303 (496)
T ss_pred cCcccCCCCCCCCCCceEECcEEecCccc------cc--cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHH
Confidence 99998885467789999999999884332 11 123455555443 379999999997 799999999999
Q ss_pred HHhhC-CCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhh-hcCCCccceeeccCchhHHHhhhcCCceec
Q 012652 298 GLEIC-NRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRV-LSHPSIACFLSHCGWNSTMEGVSNGIPFLC 375 (459)
Q Consensus 298 a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~i-L~~~~~~~~I~HgG~~s~~eal~~gvP~v~ 375 (459)
+++.+ ++.|||++.... ...+++++.++.++||...+|+||.++ |.|+++++||||||+||++|++++|||+|+
T Consensus 304 ~l~~~~~~~FiW~~~~~~----~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~ 379 (496)
T KOG1192|consen 304 ALESLQGVTFLWKYRPDD----SIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVC 379 (496)
T ss_pred HHHhCCCceEEEEecCCc----chhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceec
Confidence 99999 788999998751 111223322112457888899999998 699999999999999999999999999999
Q ss_pred cccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 012652 376 WPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMS 438 (459)
Q Consensus 376 ~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 438 (459)
+|+++||+.||+++++. |.|..+.. .+++...+.+++.+++.+++|+++++++++.+++
T Consensus 380 ~Plf~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 380 VPLFGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKEAAKRLSEILRD 438 (496)
T ss_pred CCccccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHc
Confidence 99999999999999994 66666653 6666666999999999999999999999999875
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=5.9e-26 Score=216.03 Aligned_cols=305 Identities=20% Similarity=0.200 Sum_probs=197.8
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCC-CCCCCChHHH
Q 012652 4 PHILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEP-WEERTDPGKL 81 (459)
Q Consensus 4 ~~il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 81 (459)
|||+|...+ +.||+.+++.||++| |||+|+|++.....+.+.+ .+....++.-... ....-+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 689988866 679999999999999 5999999999866655533 2344444321111 1111111111
Q ss_pred HHHH---HHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCC
Q 012652 82 IEKV---LQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIID 158 (459)
Q Consensus 82 ~~~~---~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (459)
.... .......++++.+.+++ .+||+||+|. .+.+..+|+..|||++.+.+......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~---------------- 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH---------------- 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------------
Confidence 1111 11234455666666666 8999999995 55577889999999999877655310
Q ss_pred CCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHh--hccCCEEEEcCCccCchhhhccCC
Q 012652 159 SNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKA--MKVADFQFCNSTYELEPGAFNMIP 236 (459)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~p 236 (459)
+... .. .. ........+.... ...++..+.-++. .. .....
T Consensus 129 --------------~~~~------~~----~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~~ 171 (318)
T PF13528_consen 129 --------------PNFW------LP----WD---------QDFGRLIERYIDRYHFPPADRRLALSFY-PP---LPPFF 171 (318)
T ss_pred --------------ccCC------cc----hh---------hhHHHHHHHhhhhccCCcccceecCCcc-cc---ccccc
Confidence 0000 00 00 0011111111111 2344455555544 11 22233
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCC-CCEEEEEcCCCC
Q 012652 237 ELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICN-RPFLWVVRPDIT 315 (459)
Q Consensus 237 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~ 315 (459)
++.++||+..+.... . . ..+++.|+|++|..... .++++++..+ +++++. +..
T Consensus 172 ~~~~~~p~~~~~~~~--------~--------~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~-- 225 (318)
T PF13528_consen 172 RVPFVGPIIRPEIRE--------L--------P-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN-- 225 (318)
T ss_pred cccccCchhcccccc--------c--------C-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC--
Confidence 567889887654432 0 0 12355899999975322 5566666666 566655 433
Q ss_pred CCCCCCCChhHHHHhcCCceeeccc--chhhhhcCCCccceeeccCchhHHHhhhcCCceecccc--ccccchhhhhhhc
Q 012652 316 TDANDVYPRGFQERVATRGQMIGWA--PQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY--FVDQFLNESYICD 391 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~nv~i~~~v--pq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~--~~DQ~~na~rv~~ 391 (459)
. .+..++|+.+.+|. ...++|..|++ +|||||+||++|++++|+|++++|. ..||..||+++++
T Consensus 226 ----~------~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~ 293 (318)
T PF13528_consen 226 ----A------ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE 293 (318)
T ss_pred ----c------ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH
Confidence 0 01125789999876 45679999888 9999999999999999999999999 7899999999999
Q ss_pred eeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 392 IWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 392 ~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
+|+|+.++. .+++++.|.++|+++
T Consensus 294 -~G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 294 -LGLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred -CCCeEEccc---ccCCHHHHHHHHhcC
Confidence 799999974 889999999999875
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=7.7e-26 Score=215.90 Aligned_cols=319 Identities=17% Similarity=0.156 Sum_probs=202.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH--HHHhhhhccCCCCCCeEEEecCC-CCCCCCCCCChHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK--RVMKSLEGKNYLGEQIRLVSIPD-GMEPWEERTDPGK 80 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~ 80 (459)
.||+|.+.++.||++|.++||++|.++||+|+|++.....+ .+.+ .++.+..++. ++. +.....
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~---------~g~~~~~~~~~~l~----~~~~~~ 68 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK---------ENIPYYSISSGKLR----RYFDLK 68 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc---------cCCcEEEEeccCcC----CCchHH
Confidence 36889999999999999999999999999999999755332 1222 2677777652 221 111122
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCC
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIID 158 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (459)
.+........ .+.+.++.+++ .+||+|+....+. .+..+|..+++|++.......
T Consensus 69 ~~~~~~~~~~-~~~~~~~i~~~---~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~------------------- 125 (352)
T PRK12446 69 NIKDPFLVMK-GVMDAYVRIRK---LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT------------------- 125 (352)
T ss_pred HHHHHHHHHH-HHHHHHHHHHh---cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC-------------------
Confidence 2222222222 22233334444 9999999987554 467889999999987432211
Q ss_pred CCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC-Cc
Q 012652 159 SNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI-PE 237 (459)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-p~ 237 (459)
+++. + +... +.++.++ .++++-. ..+. .+
T Consensus 126 --------------~g~~---------n-------------r~~~----------~~a~~v~-~~f~~~~---~~~~~~k 155 (352)
T PRK12446 126 --------------PGLA---------N-------------KIAL----------RFASKIF-VTFEEAA---KHLPKEK 155 (352)
T ss_pred --------------ccHH---------H-------------HHHH----------HhhCEEE-EEccchh---hhCCCCC
Confidence 1110 0 0000 1122333 3333211 1122 36
Q ss_pred cccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCH-HHHHHHHHHHhhCCCCEEEEEcCCCCC
Q 012652 238 LLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDH-NQFQELALGLEICNRPFLWVVRPDITT 316 (459)
Q Consensus 238 v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~ 316 (459)
++++|+...+.... ...+...+.+.-.+++++|+|..||...... +.+..++..+.. +.+++|+++.+.
T Consensus 156 ~~~tG~Pvr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~-- 225 (352)
T PRK12446 156 VIYTGSPVREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN-- 225 (352)
T ss_pred eEEECCcCCccccc-------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch--
Confidence 78899877664321 1111222223333457899999999865333 334444444432 478888887541
Q ss_pred CCCCCCChhHHHHhcCCceeeccc-c-hhhhhcCCCccceeeccCchhHHHhhhcCCceeccccc-----cccchhhhhh
Q 012652 317 DANDVYPRGFQERVATRGQMIGWA-P-QQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF-----VDQFLNESYI 389 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~nv~i~~~v-p-q~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~-----~DQ~~na~rv 389 (459)
+.+. .+. ..+..+.+|+ + ..+++..+|+ +|||||.+|+.|++++|+|+|++|+. .||..||.++
T Consensus 226 -----~~~~-~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l 296 (352)
T PRK12446 226 -----LDDS-LQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF 296 (352)
T ss_pred -----HHHH-Hhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH
Confidence 1111 111 1345566887 4 4579999998 99999999999999999999999974 4899999999
Q ss_pred hceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH-HHHHHHHH
Q 012652 390 CDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ-NFKARALE 431 (459)
Q Consensus 390 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~ 431 (459)
++ .|+|..+. ..+++++.|.+++.+++.|+ .|++++++
T Consensus 297 ~~-~g~~~~l~---~~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 335 (352)
T PRK12446 297 ER-QGYASVLY---EEDVTVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred HH-CCCEEEcc---hhcCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99 69999987 37889999999999999886 45544433
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.93 E-value=7.7e-24 Score=200.93 Aligned_cols=308 Identities=14% Similarity=0.164 Sum_probs=176.4
Q ss_pred EEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeE-EEecCCC-CCCCCCCCChHHH
Q 012652 5 HILVFSTPAQ-GHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIR-LVSIPDG-MEPWEERTDPGKL 81 (459)
Q Consensus 5 ~il~~~~~~~-gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~i~~~-~~~~~~~~~~~~~ 81 (459)
||+|...+.. ||+.|.++||++|.+ ||+|++++.......+... ++. +..++.. +......-+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHH
Confidence 6788776655 999999999999999 9999999987755555544 232 2222210 0000001112221
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNG 161 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (459)
...........+.+..+.+++ .+||+||+| +.+.+..+|+.+|||++.+..+... .
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~-------------- 126 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------R-------------- 126 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------c--------------
Confidence 211101112334444455555 899999999 5666788999999999987764221 0
Q ss_pred CccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhh-ccCCEEEEcCCccCchhhhccCCccc-
Q 012652 162 TPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAM-KVADFQFCNSTYELEPGAFNMIPELL- 239 (459)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~p~v~- 239 (459)
.|+.. +... . ...+....+ ...+..+...++... ...|...
T Consensus 127 ----------~~~~~----~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~ 169 (321)
T TIGR00661 127 ----------YPLKT----DLIV---------------Y----PTMAALRIFNERCERFIVPDYPFPY----TICPKIIK 169 (321)
T ss_pred ----------CCccc----chhH---------------H----HHHHHHHHhccccceEeeecCCCCC----CCCccccc
Confidence 00000 0000 0 000011111 122233333322111 1112110
Q ss_pred -cccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCC
Q 012652 240 -PVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDA 318 (459)
Q Consensus 240 -~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 318 (459)
.-+|... .+..++.. .+.+.|++.+|+.. . ..+++++++.+. +.+++...
T Consensus 170 ~~~~~~~~---------------~~~~~~~~--~~~~~iLv~~g~~~---~---~~l~~~l~~~~~-~~~i~~~~----- 220 (321)
T TIGR00661 170 NMEGPLIR---------------YDVDDVDN--YGEDYILVYIGFEY---R---YKILELLGKIAN-VKFVCYSY----- 220 (321)
T ss_pred cCCCcccc---------------hhhhcccc--CCCCcEEEECCcCC---H---HHHHHHHHhCCC-eEEEEeCC-----
Confidence 0011111 11112221 12456777777642 2 345666766553 23333222
Q ss_pred CCCCChhHHHHhcCCceeecccc--hhhhhcCCCccceeeccCchhHHHhhhcCCceecccccc--ccchhhhhhhceee
Q 012652 319 NDVYPRGFQERVATRGQMIGWAP--QQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFV--DQFLNESYICDIWK 394 (459)
Q Consensus 319 ~~~~~~~~~~~~~~nv~i~~~vp--q~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~--DQ~~na~rv~~~~G 394 (459)
....+ ..++|+.+.+|.| ..++|+.|++ +|||||.+|++||+++|+|++++|... ||..||+.+++ .|
T Consensus 221 -~~~~~----~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g 292 (321)
T TIGR00661 221 -EVAKN----SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LG 292 (321)
T ss_pred -CCCcc----ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CC
Confidence 00111 2357888999997 4578899888 999999999999999999999999854 99999999999 69
Q ss_pred eeeeeecCCCCcccHHHHHHHHHHHhCCHHHH
Q 012652 395 VGLKLDKDESGIITGEEISNKLVQVLGDQNFK 426 (459)
Q Consensus 395 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 426 (459)
+|+.++. .++ ++.+++.+++.|+.|+
T Consensus 293 ~~~~l~~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 293 CGIALEY---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred CEEEcCh---hhH---HHHHHHHhcccccccc
Confidence 9999964 333 7777888888887664
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.2e-21 Score=182.86 Aligned_cols=323 Identities=15% Similarity=0.141 Sum_probs=200.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCcch-HHHHhhhhccCCCCCCeEEEecCCCCCCCC-CCCChHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGF-RVTFVNSEYNH-KRVMKSLEGKNYLGEQIRLVSIPDGMEPWE-ERTDPGK 80 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh-~Vt~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 80 (459)
++|++...++.||+.|.++|+++|.++|+ +|.++...... ..+.+. .++.++.++.+-.... .......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~--------~~~~~~~I~~~~~~~~~~~~~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ--------YGIEFELIPSGGLRRKGSLKLLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc--------cCceEEEEecccccccCcHHHHHH
Confidence 36788888899999999999999999999 58887554433 222222 3777777764433322 1111111
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCC
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIID 158 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (459)
.+..+. .....+.+++. .+||+|+.-..++ .+..+|..+|||++..-...
T Consensus 73 ~~~~~~--~~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~-------------------- 124 (357)
T COG0707 73 PFKLLK--GVLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA-------------------- 124 (357)
T ss_pred HHHHHH--HHHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC--------------------
Confidence 111111 12234455555 9999999966555 67788999999999733211
Q ss_pred CCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC--C
Q 012652 159 SNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI--P 236 (459)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--p 236 (459)
.+|+.. .++ . +.++.+ ..+++.. .... .
T Consensus 125 -------------~~G~an--------k~~--------------~----------~~a~~V-~~~f~~~----~~~~~~~ 154 (357)
T COG0707 125 -------------VPGLAN--------KIL--------------S----------KFAKKV-ASAFPKL----EAGVKPE 154 (357)
T ss_pred -------------CcchhH--------HHh--------------H----------Hhhcee-eeccccc----cccCCCC
Confidence 112110 000 0 001112 2223221 1122 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCH-HHHHHHHHHHhhCCCCEEEEEcCCCC
Q 012652 237 ELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDH-NQFQELALGLEICNRPFLWVVRPDIT 315 (459)
Q Consensus 237 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~ 315 (459)
+++.+|--...+... .+..... .....++++|+|.-||.+...- +.+..+...+.+ +.++++.++.+
T Consensus 155 ~~~~tG~Pvr~~~~~--------~~~~~~~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~-- 222 (357)
T COG0707 155 NVVVTGIPVRPEFEE--------LPAAEVR-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN-- 222 (357)
T ss_pred ceEEecCcccHHhhc--------cchhhhh-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc--
Confidence 577777444332211 0001011 1112257899999998854222 223333333333 46777777654
Q ss_pred CCCCCCCChhHHHHh-cCC-ceeecccchh-hhhcCCCccceeeccCchhHHHhhhcCCceeccccc----cccchhhhh
Q 012652 316 TDANDVYPRGFQERV-ATR-GQMIGWAPQQ-RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF----VDQFLNESY 388 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~-~~n-v~i~~~vpq~-~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~----~DQ~~na~r 388 (459)
. .+...... ..+ +.+.+|.++. +++..+|+ +||++|.+|+.|++++|+|+|.+|.- .||..||..
T Consensus 223 -----~-~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~ 294 (357)
T COG0707 223 -----D-LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF 294 (357)
T ss_pred -----h-HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHH
Confidence 0 11212122 223 6777998875 69999999 99999999999999999999999963 489999999
Q ss_pred hhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 012652 389 ICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSS 439 (459)
Q Consensus 389 v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~ 439 (459)
+++ .|.|..++ ..++|.+.+.+.|.+++++ .++.++|++..++.
T Consensus 295 l~~-~gaa~~i~---~~~lt~~~l~~~i~~l~~~---~~~l~~m~~~a~~~ 338 (357)
T COG0707 295 LEK-AGAALVIR---QSELTPEKLAELILRLLSN---PEKLKAMAENAKKL 338 (357)
T ss_pred HHh-CCCEEEec---cccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHhc
Confidence 999 59999998 4789999999999999998 45666666666654
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=7.9e-20 Score=176.80 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=197.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH--KRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (459)
|||+|...+..||....+.||++|.++||+|++++.+... ...++ .+++++.++..-.. .......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~~~~---~~~~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSGGLR---RKGSLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEeccCcC---CCChHHH
Confidence 8999999888899999999999999999999999985521 11111 26666665432111 1111111
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM--GWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDS 159 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (459)
....... ...+..+.+.+++ .+||+|++.... +.+..+++..++|++.......
T Consensus 70 l~~~~~~-~~~~~~~~~~ik~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-------------------- 125 (357)
T PRK00726 70 LKAPFKL-LKGVLQARKILKR---FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV-------------------- 125 (357)
T ss_pred HHHHHHH-HHHHHHHHHHHHh---cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC--------------------
Confidence 1111111 1223333333444 899999999642 2455667888999985321100
Q ss_pred CCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCCccc
Q 012652 160 NGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPELL 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~ 239 (459)
++ .. . +..+ ..+|.+++.+...+. ..-..+++
T Consensus 126 -------------~~--------~~-~-------------r~~~----------~~~d~ii~~~~~~~~---~~~~~~i~ 157 (357)
T PRK00726 126 -------------PG--------LA-N-------------KLLA----------RFAKKVATAFPGAFP---EFFKPKAV 157 (357)
T ss_pred -------------cc--------HH-H-------------HHHH----------HHhchheECchhhhh---ccCCCCEE
Confidence 00 00 0 0000 112333333321111 11224667
Q ss_pred cccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCC--CEEEEEcCCCCCC
Q 012652 240 PVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNR--PFLWVVRPDITTD 317 (459)
Q Consensus 240 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~ 317 (459)
++|......... +. .. ..-+...++.++|++..|+.. .......+.+++.+... .+++.++..
T Consensus 158 vi~n~v~~~~~~-------~~-~~-~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g---- 222 (357)
T PRK00726 158 VTGNPVREEILA-------LA-AP-PARLAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGKG---- 222 (357)
T ss_pred EECCCCChHhhc-------cc-ch-hhhccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCC----
Confidence 777554332111 00 00 011122233456666555431 12222334366554433 344555543
Q ss_pred CCCCCChhHHHH--hcCCceeecccc-hhhhhcCCCccceeeccCchhHHHhhhcCCceecccc----ccccchhhhhhh
Q 012652 318 ANDVYPRGFQER--VATRGQMIGWAP-QQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FVDQFLNESYIC 390 (459)
Q Consensus 318 ~~~~~~~~~~~~--~~~nv~i~~~vp-q~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~----~~DQ~~na~rv~ 390 (459)
.. +.+.+. ..-++.+.+|+. ..++++.+|+ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.
T Consensus 223 ~~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~ 296 (357)
T PRK00726 223 DL----EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALV 296 (357)
T ss_pred cH----HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH
Confidence 11 222222 122367789984 4689999999 9999999999999999999999997 368999999999
Q ss_pred ceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 391 DIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 391 ~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
+ .|.|..+.. .+++++.|.++|.++++|++++++..+-+.... +..+..+..+.+.+.
T Consensus 297 ~-~~~g~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 297 D-AGAALLIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARALG----KPDAAERLADLIEEL 354 (357)
T ss_pred H-CCCEEEEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC----CcCHHHHHHHHHHHH
Confidence 9 699999974 567899999999999999888766655544432 235555555555443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=1.1e-18 Score=168.48 Aligned_cols=322 Identities=16% Similarity=0.124 Sum_probs=187.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEK 84 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (459)
+|+|.+.+..||......|++.|.++||+|++++....... .. ....++++..++..-.. ..........
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 70 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RL------VPKAGIPLHTIPVGGLR---RKGSLKKLKA 70 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hc------ccccCCceEEEEecCcC---CCChHHHHHH
Confidence 58899999999999999999999999999999987543211 10 01125666655432111 1111111111
Q ss_pred HHHhccHHHHHHHHHHhCCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCCC
Q 012652 85 VLQVMPGKLEELIEEINGRDDEKIDCFISDGFM--GWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGT 162 (459)
Q Consensus 85 ~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (459)
+... ...+..+.+.+++ .+||+|++.... ..+..+|...|+|++..... ..
T Consensus 71 ~~~~-~~~~~~~~~~i~~---~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~~---------------------- 123 (350)
T cd03785 71 PFKL-LKGVLQARKILKK---FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-AV---------------------- 123 (350)
T ss_pred HHHH-HHHHHHHHHHHHh---cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-CC----------------------
Confidence 1111 1222233333444 899999987532 34567788899999852111 00
Q ss_pred ccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCCcccccc
Q 012652 163 PIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPELLPVG 242 (459)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~~vG 242 (459)
++ .. + +.. ...++.+++.+....+. -...++.++|
T Consensus 124 ----------~~--------~~---------------~---~~~------~~~~~~vi~~s~~~~~~---~~~~~~~~i~ 158 (350)
T cd03785 124 ----------PG--------LA---------------N---RLL------ARFADRVALSFPETAKY---FPKDKAVVTG 158 (350)
T ss_pred ----------cc--------HH---------------H---HHH------HHhhCEEEEcchhhhhc---CCCCcEEEEC
Confidence 00 00 0 000 11245666655443332 0123566666
Q ss_pred ccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCC-HHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCC
Q 012652 243 PLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLD-HNQFQELALGLEICNRPFLWVVRPDITTDANDV 321 (459)
Q Consensus 243 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 321 (459)
......... +.+ . ...+...+++++|++..|+..... .+.+..++..+.+.+..+++.++.. .
T Consensus 159 n~v~~~~~~-------~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----~--- 222 (350)
T cd03785 159 NPVREEILA-------LDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG----D--- 222 (350)
T ss_pred CCCchHHhh-------hhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc----c---
Confidence 544322111 000 0 122222334556666556543211 1122233333332234455555543 1
Q ss_pred CChhHHHHh---cCCceeeccc-chhhhhcCCCccceeeccCchhHHHhhhcCCceecccc----ccccchhhhhhhcee
Q 012652 322 YPRGFQERV---ATRGQMIGWA-PQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FVDQFLNESYICDIW 393 (459)
Q Consensus 322 ~~~~~~~~~---~~nv~i~~~v-pq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~----~~DQ~~na~rv~~~~ 393 (459)
.+.+.+.. .+|+.+.+|+ +..++|..+|+ +|+++|.+++.||+++|+|+|++|. ..+|..|+..+.+ .
T Consensus 223 -~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~ 298 (350)
T cd03785 223 -LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-A 298 (350)
T ss_pred -HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-C
Confidence 12222222 3689999998 45679999998 9999999999999999999999985 4678899999998 6
Q ss_pred eeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 394 KVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 394 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
|.|..++. ...+.++|.++|.++++|++.++...+
T Consensus 299 g~g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~ 333 (350)
T cd03785 299 GAAVLIPQ---EELTPERLAAALLELLSDPERLKAMAE 333 (350)
T ss_pred CCEEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999974 446899999999999998765554433
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.78 E-value=2.6e-17 Score=159.61 Aligned_cols=351 Identities=13% Similarity=0.038 Sum_probs=202.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
-.||+|.+.++.||++|. +|+++|+++|++|+|++.... .+++.+.+ ..+++..++ ...+.+.+
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~--------v~G~~~~l 68 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELS--------VMGLREVL 68 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhh--------hccHHHHH
Confidence 368999999999999999 999999999999999986432 34444211 023333222 01111112
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCC-cch--HHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCC
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFISDGF-MGW--SMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDS 159 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~-~~~--~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (459)
..+.. ....+.++.+.+++ .+||+||.-.. ... ....|+.+|||++.+. +|--
T Consensus 69 ~~~~~-~~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~------------------- 124 (385)
T TIGR00215 69 GRLGR-LLKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQV------------------- 124 (385)
T ss_pred HHHHH-HHHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcH-------------------
Confidence 22111 12233444555555 89999987443 212 3337889999998643 1110
Q ss_pred CCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCCccc
Q 012652 160 NGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPELL 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~ 239 (459)
|.|.. ... +.+.+ .+|.+++.+..+.+.. ....-++.
T Consensus 125 -------------------------waw~~--~~~-----r~l~~----------~~d~v~~~~~~e~~~~-~~~g~~~~ 161 (385)
T TIGR00215 125 -------------------------WAWRK--WRA-----KKIEK----------ATDFLLAILPFEKAFY-QKKNVPCR 161 (385)
T ss_pred -------------------------hhcCc--chH-----HHHHH----------HHhHhhccCCCcHHHH-HhcCCCEE
Confidence 00000 000 11111 2334444443333222 12223566
Q ss_pred cccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhC-----CCCEEEEEcCCC
Q 012652 240 PVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEIC-----NRPFLWVVRPDI 314 (459)
Q Consensus 240 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~ 314 (459)
+||.-..+.... ..+...+..+-+.-.+++++|.+--||....-......+++++..+ +.++++.....
T Consensus 162 ~vGnPv~~~~~~-----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~- 235 (385)
T TIGR00215 162 FVGHPLLDAIPL-----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF- 235 (385)
T ss_pred EECCchhhhccc-----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc-
Confidence 788544332110 0011122222233334566888777776432133455565554332 23454444322
Q ss_pred CCCCCCCCChhHH---HHhcCCceeeccc-chhhhhcCCCccceeeccCchhHHHhhhcCCceecc----cccc------
Q 012652 315 TTDANDVYPRGFQ---ERVATRGQMIGWA-PQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCW----PYFV------ 380 (459)
Q Consensus 315 ~~~~~~~~~~~~~---~~~~~nv~i~~~v-pq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~----P~~~------ 380 (459)
...+.+. +....+..+..+. +..+++..+|+ +|+-+|..|+ |++++|+|+|++ |+..
T Consensus 236 ------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~ 306 (385)
T TIGR00215 236 ------KRRLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRL 306 (385)
T ss_pred ------hhHHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHH
Confidence 0111222 1221222332221 33469999998 9999999988 999999999999 8642
Q ss_pred ---ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 012652 381 ---DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ----NFKARALELKEITMSSVREGGSSYKTFQNF 453 (459)
Q Consensus 381 ---DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 453 (459)
.|..|+..+.. .++...+. ..++|++.|.+.+.++|.|+ +++++.++--+.+++...++|.+.++.+.+
T Consensus 307 ~~~~~~~~~nil~~-~~~~pel~---q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 307 VKTDYISLPNILAN-RLLVPELL---QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred HcCCeeeccHHhcC-Cccchhhc---CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 38889999998 59888876 47899999999999999999 888777777777777776677887777665
Q ss_pred HH
Q 012652 454 LE 455 (459)
Q Consensus 454 ~~ 455 (459)
++
T Consensus 383 ~~ 384 (385)
T TIGR00215 383 LE 384 (385)
T ss_pred hh
Confidence 54
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=6.7e-17 Score=155.87 Aligned_cols=322 Identities=16% Similarity=0.138 Sum_probs=177.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIE 83 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (459)
|||+|++.+..||+.....||++|.++||+|++++.+..... .. ....++++..++..-.. .......+.
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--~~-----~~~~g~~~~~i~~~~~~---~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--RL-----VPKAGIEFYFIPVGGLR---RKGSFRLIK 70 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--cc-----cccCCCceEEEeccCcC---CCChHHHHH
Confidence 489999999999999888999999999999999987432110 00 00125666655422111 111222221
Q ss_pred HHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCC
Q 012652 84 KVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNG 161 (459)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (459)
..... ...+..+.+.+++ .+||+|++..... .+..++..+++|++.... ...
T Consensus 71 ~~~~~-~~~~~~l~~~i~~---~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~--------------------- 124 (348)
T TIGR01133 71 TPLKL-LKAVFQARRILKK---FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NAV--------------------- 124 (348)
T ss_pred HHHHH-HHHHHHHHHHHHh---cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CCC---------------------
Confidence 11111 1122333333343 8999999875432 345568888999874211 000
Q ss_pred CccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCCccccc
Q 012652 162 TPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPELLPV 241 (459)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~~v 241 (459)
+ . . ..++. .+.+|.+++.+...-++. ...+|
T Consensus 125 --------------~---------~-------------~-~~~~~------~~~~d~ii~~~~~~~~~~------~~~~i 155 (348)
T TIGR01133 125 --------------P---------G-------------L-TNKLL------SRFAKKVLISFPGAKDHF------EAVLV 155 (348)
T ss_pred --------------c---------c-------------H-HHHHH------HHHhCeeEECchhHhhcC------CceEE
Confidence 0 0 0 00000 122455555544322211 22445
Q ss_pred cccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHh---hCCCCEEEEEcCCCCCCC
Q 012652 242 GPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLE---ICNRPFLWVVRPDITTDA 318 (459)
Q Consensus 242 Gp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~ 318 (459)
|......... .+.. ...+...++.++|.+..|+.. .......+.++++ +.+.++++..++. .
T Consensus 156 ~n~v~~~~~~------~~~~---~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~l~~~~~~~~~~~g~~----~ 220 (348)
T TIGR01133 156 GNPVRQEIRS------LPVP---RERFGLREGKPTILVLGGSQG--AKILNELVPKALAKLAEKGIQIVHQTGKN----D 220 (348)
T ss_pred cCCcCHHHhc------ccch---hhhcCCCCCCeEEEEECCchh--HHHHHHHHHHHHHHHhhcCcEEEEECCcc----h
Confidence 5333211100 0000 012222233445544434433 2222222334443 3344565544432 1
Q ss_pred CCCCChhHHHHhcC-Cc-eeeccc--chhhhhcCCCccceeeccCchhHHHhhhcCCceeccccc---cccchhhhhhhc
Q 012652 319 NDVYPRGFQERVAT-RG-QMIGWA--PQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF---VDQFLNESYICD 391 (459)
Q Consensus 319 ~~~~~~~~~~~~~~-nv-~i~~~v--pq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~---~DQ~~na~rv~~ 391 (459)
. +.+.+...+ ++ .++.|. +..++|+.+|+ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+.+
T Consensus 221 ---~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~ 294 (348)
T TIGR01133 221 ---L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED 294 (348)
T ss_pred ---H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH
Confidence 1 222222221 11 223344 45679999998 99999988999999999999999863 467889999988
Q ss_pred eeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 012652 392 IWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMS 438 (459)
Q Consensus 392 ~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 438 (459)
.|.|..++. .+.+.++|.+++.++++|++.+++. ++..++
T Consensus 295 -~~~G~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~---~~~~~~ 334 (348)
T TIGR01133 295 -LGAGLVIRQ---KELLPEKLLEALLKLLLDPANLEAM---AEAARK 334 (348)
T ss_pred -CCCEEEEec---ccCCHHHHHHHHHHHHcCHHHHHHH---HHHHHh
Confidence 699998864 5568999999999999998765544 444444
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.75 E-value=4.5e-16 Score=151.81 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=109.1
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhHHH---HhcCCceeecccchh-hhhc
Q 012652 273 PKSVIYVAFGSHTVLDHNQFQELALGLEIC-NRPFLWVVRPDITTDANDVYPRGFQE---RVATRGQMIGWAPQQ-RVLS 347 (459)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~nv~i~~~vpq~-~iL~ 347 (459)
++++|++..|+.... +.+..+++++.+. +.+++++.+.+ ..+.+.+.+ ..++|+.+.+|+++. +++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 456777777776431 2345666677543 45666666533 111122221 223588999999874 7999
Q ss_pred CCCccceeeccCchhHHHhhhcCCceecc-ccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHH
Q 012652 348 HPSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFK 426 (459)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~~gvP~v~~-P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 426 (459)
.+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+... +.++|.++|.++++|++.+
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~-------~~~~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR-------DDEEVFAKTEALLQDDMKL 342 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC-------CHHHHHHHHHHHHCCHHHH
Confidence 9998 99999988999999999999985 666777889988888 59988653 5799999999999998765
Q ss_pred HHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 427 ARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 427 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
++.+ +..++.. ...+..+.++.+++.
T Consensus 343 ~~m~---~~~~~~~-~~~s~~~i~~~i~~~ 368 (380)
T PRK13609 343 LQMK---EAMKSLY-LPEPADHIVDDILAE 368 (380)
T ss_pred HHHH---HHHHHhC-CCchHHHHHHHHHHh
Confidence 5443 3433321 233554555544443
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=142.97 Aligned_cols=330 Identities=16% Similarity=0.156 Sum_probs=202.2
Q ss_pred CCEEEEEcCC--CccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCC---CC
Q 012652 3 SPHILVFSTP--AQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWE---ER 75 (459)
Q Consensus 3 ~~~il~~~~~--~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~ 75 (459)
++||+|++.. +-||+.+++.||+.|++. |.+|++++......-..- ..++++..+|.-..... ..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~~~G~~~~ 80 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKGDNGEYGL 80 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEecCCCceee
Confidence 4599999965 559999999999999987 999999998655433322 24899999985333221 11
Q ss_pred CChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccC
Q 012652 76 TDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDG 155 (459)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (459)
.+.-.-.+.+.+...+.+-..++. .+||++|+|.+-.. .. .+. .|... +.. ..+
T Consensus 81 ~d~~~~l~e~~~~Rs~lil~t~~~------fkPDi~IVd~~P~G-lr-~EL--~ptL~-----------yl~-----~~~ 134 (400)
T COG4671 81 VDLDGDLEETKKLRSQLILSTAET------FKPDIFIVDKFPFG-LR-FEL--LPTLE-----------YLK-----TTG 134 (400)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHh------cCCCEEEEeccccc-hh-hhh--hHHHH-----------HHh-----hcC
Confidence 111111344444434444445555 99999999976443 11 110 01110 000 000
Q ss_pred CCCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhcc-
Q 012652 156 IIDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNM- 234 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~- 234 (459)
...+-++. ...+.+......+.. +...+... +..|.+++.++|.|..+...+
T Consensus 135 -------------t~~vL~lr--~i~D~p~~~~~~w~~------~~~~~~I~------r~yD~V~v~GdP~f~d~~~~~~ 187 (400)
T COG4671 135 -------------TRLVLGLR--SIRDIPQELEADWRR------AETVRLIN------RFYDLVLVYGDPDFYDPLTEFP 187 (400)
T ss_pred -------------CcceeehH--hhhhchhhhccchhh------hHHHHHHH------HhheEEEEecCccccChhhcCC
Confidence 00000001 001111000000000 11111111 345789999999886552222
Q ss_pred -----CCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhh-CCCC--E
Q 012652 235 -----IPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEI-CNRP--F 306 (459)
Q Consensus 235 -----~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~--~ 306 (459)
-.++.|+|-+ .++..... .|. . ..+.+--|+||-|. +....+++...++|-.. .+.+ .
T Consensus 188 ~~~~i~~k~~ytG~v-q~~~~~~~----~p~-------~-~~pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~~~ 253 (400)
T COG4671 188 FAPAIRAKMRYTGFV-QRSLPHLP----LPP-------H-EAPEGFDILVSVGG-GADGAELIETALAAAQLLAGLNHKW 253 (400)
T ss_pred ccHhhhhheeEeEEe-eccCcCCC----CCC-------c-CCCccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCcce
Confidence 2278999988 32211100 111 0 11334479999886 34467777777777543 2333 4
Q ss_pred EEEEcCCCCCCCCCCCChh----HHHHhc--CCceeecccchh-hhhcCCCccceeeccCchhHHHhhhcCCceeccccc
Q 012652 307 LWVVRPDITTDANDVYPRG----FQERVA--TRGQMIGWAPQQ-RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF 379 (459)
Q Consensus 307 i~~~~~~~~~~~~~~~~~~----~~~~~~--~nv~i~~~vpq~-~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~ 379 (459)
+++.++. .|.. +....+ +++.|..|-.+. .++..++. +|+-||+||++|-+.+|||.+++|..
T Consensus 254 ~ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~ 323 (400)
T COG4671 254 LIVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRA 323 (400)
T ss_pred EEEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccC
Confidence 4455543 4433 333334 789999988764 69999888 99999999999999999999999985
Q ss_pred ---cccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhC
Q 012652 380 ---VDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLG 421 (459)
Q Consensus 380 ---~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 421 (459)
-||-.-|+|+++ +|+--.+.+ +++++..+.++|...+.
T Consensus 324 ~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~ 364 (400)
T COG4671 324 APREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALA 364 (400)
T ss_pred CCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhccc
Confidence 499999999999 899999986 88999999999999997
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.72 E-value=1.1e-15 Score=141.42 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=78.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhHHHH--hcCCceeecccchh-hhhcC
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEIC--NRPFLWVVRPDITTDANDVYPRGFQER--VATRGQMIGWAPQQ-RVLSH 348 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~i~~~vpq~-~iL~~ 348 (459)
.+.|++++|... .......+++++... +.++.++++.. ....+.+.+. ...|+.+..++++. ++|..
T Consensus 170 ~~~iLi~~GG~d--~~~~~~~~l~~l~~~~~~~~i~vv~G~~------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 170 LRRVLVSFGGAD--PDNLTLKLLSALAESQINISITLVTGSS------NPNLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred cCeEEEEeCCcC--CcCHHHHHHHHHhccccCceEEEEECCC------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 357999999643 333445566676543 45677777754 1222333322 24588899999986 79999
Q ss_pred CCccceeeccCchhHHHhhhcCCceeccccccccchhhhhh
Q 012652 349 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYI 389 (459)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv 389 (459)
+|+ +||+|| +|++|+++.|+|+|++|...+|..||+.+
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 999 999999 99999999999999999999999999753
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.67 E-value=1.2e-14 Score=141.98 Aligned_cols=350 Identities=13% Similarity=0.055 Sum_probs=176.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
++||+|...+..||++|.. ++++|+++++++.+++.... .+++.+.+ ..+.+..++- ..+.+.+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~l~~--------~g~~~~~ 64 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCE-----SLFDMEELAV--------MGLVEVL 64 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCc-----cccCHHHhhh--------ccHHHHH
Confidence 3689999999999999999 99999998888888875332 24333110 1122222210 1111222
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCC-cchH--HHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCC
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFISDGF-MGWS--MEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDS 159 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~-~~~~--~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (459)
..+.. ....+..+.+.+++ .+||+|+.-.. ..+. ...|...|||++.+.....+
T Consensus 65 ~~~~~-~~~~~~~~~~~l~~---~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~------------------- 121 (380)
T PRK00025 65 PRLPR-LLKIRRRLKRRLLA---EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW------------------- 121 (380)
T ss_pred HHHHH-HHHHHHHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh-------------------
Confidence 22111 11223333344444 99999876322 1222 34467889998864211000
Q ss_pred CCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCCccc
Q 012652 160 NGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPELL 239 (459)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~ 239 (459)
.+.. ..... . .+.++.+++.+....+.- ....-++.
T Consensus 122 --------------------------~~~~----------~~~~~-~------~~~~d~i~~~~~~~~~~~-~~~g~~~~ 157 (380)
T PRK00025 122 --------------------------AWRQ----------GRAFK-I------AKATDHVLALFPFEAAFY-DKLGVPVT 157 (380)
T ss_pred --------------------------hcCc----------hHHHH-H------HHHHhhheeCCccCHHHH-HhcCCCeE
Confidence 0000 00000 0 122344555554332221 11112366
Q ss_pred cccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhC-----CCCEEEEEcCCC
Q 012652 240 PVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEIC-----NRPFLWVVRPDI 314 (459)
Q Consensus 240 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~ 314 (459)
++|....+.... .+........+.-.+++++|.+..||...........++++++.+ +.+++++.+..
T Consensus 158 ~~G~p~~~~~~~------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~- 230 (380)
T PRK00025 158 FVGHPLADAIPL------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP- 230 (380)
T ss_pred EECcCHHHhccc------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-
Confidence 777333221110 011122222233223355666666654322222344455554322 23566654322
Q ss_pred CCCCCCCCChhHHHHhcC----CceeecccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccc------c--cc
Q 012652 315 TTDANDVYPRGFQERVAT----RGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF------V--DQ 382 (459)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~----nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~------~--DQ 382 (459)
...+.+.+...+ ++.+..- .-.+++..+|+ +|+.+|.+++ ||+++|+|+|+.|-. . .|
T Consensus 231 ------~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~ 300 (380)
T PRK00025 231 ------KRREQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRL 300 (380)
T ss_pred ------hhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHH
Confidence 111222222221 2333220 23578999998 9999998887 999999999988432 1 22
Q ss_pred chh-----hhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 383 FLN-----ESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 383 ~~n-----a~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
..| +..+.+ .+++..+. ....+++.|.+++.++++|++.+++..+-.+.+++.. ..++..+..+.+.+.+
T Consensus 301 ~~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 301 VKVPYVSLPNLLAG-RELVPELL---QEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HcCCeeehHHHhcC-CCcchhhc---CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 222 122333 13333333 2567899999999999999977765555444444433 2456656665555443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=1.1e-13 Score=134.94 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=109.7
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHH-hh-CCCCEEEEEcCCCCCCCCCCCChhHHHH--hcCCceeecccchh-hhh
Q 012652 272 QPKSVIYVAFGSHTVLDHNQFQELALGL-EI-CNRPFLWVVRPDITTDANDVYPRGFQER--VATRGQMIGWAPQQ-RVL 346 (459)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~i~~~vpq~-~iL 346 (459)
+++++|++..|+... ...+..+++++ +. .+.+++++.+.+ ..+-+.+.+. ..+++.+.+|+++. +++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 346688888887652 23344555554 22 235666666543 1111222222 13578888999754 699
Q ss_pred cCCCccceeeccCchhHHHhhhcCCceecc-ccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHH
Q 012652 347 SHPSIACFLSHCGWNSTMEGVSNGIPFLCW-PYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNF 425 (459)
Q Consensus 347 ~~~~~~~~I~HgG~~s~~eal~~gvP~v~~-P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 425 (459)
..+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+... +.+++.++|.++++|++.
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~~~i~~ll~~~~~ 341 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAIKIVASLTNGNEQ 341 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHHHHHHHHhcCHHH
Confidence 99999 99998888999999999999998 676777899999999 69998763 688999999999998754
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 426 KARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 426 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
+ ++|++..++... ..+..+.++.+++.
T Consensus 342 ~---~~m~~~~~~~~~-~~s~~~i~~~l~~l 368 (391)
T PRK13608 342 L---TNMISTMEQDKI-KYATQTICRDLLDL 368 (391)
T ss_pred H---HHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3 445555554322 24444444444443
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.58 E-value=8.2e-13 Score=128.72 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=84.4
Q ss_pred CCceeecccchh-hhhcCCCccceeeccCchhHHHhhhcCCceeccccccccc-hhhhhhhceeeeeeeeecCCCCcccH
Q 012652 332 TRGQMIGWAPQQ-RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQF-LNESYICDIWKVGLKLDKDESGIITG 409 (459)
Q Consensus 332 ~nv~i~~~vpq~-~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~-~na~rv~~~~G~G~~~~~~~~~~~~~ 409 (459)
.++.+.+|+++. +++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|+... ++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~~-------~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFSE-------SP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeecC-------CH
Confidence 467888999864 79999999 999999999999999999999998766665 78988888 59997652 68
Q ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 410 EEISNKLVQVLGD-QNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 410 ~~l~~~i~~ll~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
++|.++|.+++.| ++.+ ++|++..++.. ...+..+.++.+.+.+
T Consensus 335 ~~la~~i~~ll~~~~~~~---~~m~~~~~~~~-~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 335 KEIARIVAEWFGDKSDEL---EAMSENALKLA-RPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHHcCCHHHH---HHHHHHHHHhc-CCchHHHHHHHHHHHh
Confidence 9999999999987 6543 34455554432 1344455555555443
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=2.8e-16 Score=134.49 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=98.0
Q ss_pred EEEEEeCCcccCCH-HHHHHHHHHHhh--CCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccc-hhhhhcCCCc
Q 012652 276 VIYVAFGSHTVLDH-NQFQELALGLEI--CNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAP-QQRVLSHPSI 351 (459)
Q Consensus 276 ~v~vs~Gs~~~~~~-~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vp-q~~iL~~~~~ 351 (459)
+|+|+.||.....- +.+..+...+.. ...+++++++... ....... .+....|+.+.+|++ ..+++..+|+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~----~~~~~~~-~~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN----YEELKIK-VENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE----CHHHCCC-HCCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc----HHHHHHH-HhccCCcEEEEechhhHHHHHHHcCE
Confidence 48999998743211 123333333332 2578888887651 1111111 111126789999999 6789999998
Q ss_pred cceeeccCchhHHHhhhcCCceecccccc----ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHH
Q 012652 352 ACFLSHCGWNSTMEGVSNGIPFLCWPYFV----DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNF 425 (459)
Q Consensus 352 ~~~I~HgG~~s~~eal~~gvP~v~~P~~~----DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 425 (459)
+|||||.+|++|++++|+|+|++|... +|..||..+++ .|+|..+.. ...+.+.|.++|.+++.++..
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SCCCHHHHHHCHCCCHH-
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCHHHHHHHHHHHHcCcHH
Confidence 999999999999999999999999988 99999999999 699999984 677799999999999998864
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.53 E-value=2.2e-11 Score=117.63 Aligned_cols=346 Identities=13% Similarity=0.069 Sum_probs=180.1
Q ss_pred EEEEEc---CCC-ccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 5 HILVFS---TPA-QGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 5 ~il~~~---~~~-~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
||++++ .+. .|+...+..|+++|.++||+|++++........... ....+..+....... ..
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~- 66 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--------RVVPVPSVPLPGYPE-----IR- 66 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--------CceeecccccCcccc-----eE-
Confidence 466555 223 699999999999999999999999986532111000 011111111000000 00
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc---hHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCC
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG---WSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGII 157 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (459)
... .....+...++. .+||+|++..... .+..++...++|++...+........ .
T Consensus 67 ---~~~-~~~~~~~~~~~~------~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~---------- 124 (364)
T cd03814 67 ---LAL-PPRRRVRRLLDA------FAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLR--Y---------- 124 (364)
T ss_pred ---ecc-cchhhHHHHHHh------cCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhh--h----------
Confidence 000 011223333344 8999998764332 45677788999998755433210000 0
Q ss_pred CCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCCc
Q 012652 158 DSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPE 237 (459)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~ 237 (459)
.. . ... ........+ .....++.+++.+....+.......++
T Consensus 125 -----------------~~----~----~~~-----------~~~~~~~~~--~~~~~~d~i~~~s~~~~~~~~~~~~~~ 166 (364)
T cd03814 125 -----------------YG----L----GPL-----------SWLAWAYLR--WFHNRADRVLVPSPSLADELRARGFRR 166 (364)
T ss_pred -----------------cc----c----chH-----------hHhhHHHHH--HHHHhCCEEEeCCHHHHHHHhccCCCc
Confidence 00 0 000 000001111 112457788888876655321122234
Q ss_pred cccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhhC-CCCEEEEEcCCCC
Q 012652 238 LLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTV-LDHNQFQELALGLEIC-NRPFLWVVRPDIT 315 (459)
Q Consensus 238 v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~ 315 (459)
+..+.+......-. . ...+....+-+. .+++.+++..|+... ...+.+..++..+... +.+++++..+.
T Consensus 167 ~~~~~~g~~~~~~~---~--~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~-- 237 (364)
T cd03814 167 VRLWPRGVDTELFH---P--RRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP-- 237 (364)
T ss_pred eeecCCCccccccC---c--ccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc--
Confidence 44443322211100 0 001111111111 223456677777642 2233333333344322 34455444322
Q ss_pred CCCCCCCChhHHHHhcCCceeecccchhh---hhcCCCccceeeccC----chhHHHhhhcCCceeccccccccchhhhh
Q 012652 316 TDANDVYPRGFQERVATRGQMIGWAPQQR---VLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNESY 388 (459)
Q Consensus 316 ~~~~~~~~~~~~~~~~~nv~i~~~vpq~~---iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~r 388 (459)
. .+.+ +...+|+.+.+|+++.+ ++..+|+ +|+.+. .+++.||+++|+|+|+.+.. .+...
T Consensus 238 --~----~~~~-~~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~ 304 (364)
T cd03814 238 --A----RARL-EARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADI 304 (364)
T ss_pred --h----HHHH-hccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhh
Confidence 0 0111 12357899999999765 8999998 886654 47899999999999988644 45556
Q ss_pred hhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 389 ICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 389 v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
+++ -+.|.... ..+.+++.++|.+++.|++.+++..+-+....+ .-+.....+++++.
T Consensus 305 i~~-~~~g~~~~-----~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 305 VTD-GENGLLVE-----PGDAEAFAAALAALLADPELRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred hcC-CcceEEcC-----CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 666 38888774 446788999999999998765554443333322 24555556665554
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.47 E-value=1.4e-11 Score=119.73 Aligned_cols=351 Identities=13% Similarity=0.025 Sum_probs=185.3
Q ss_pred CCccCHHHHHHHHHHHHh--CCCEEE---EEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHH
Q 012652 12 PAQGHVIPLLEFSQCLAK--HGFRVT---FVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVL 86 (459)
Q Consensus 12 ~~~gH~~p~~~La~~L~~--rGh~Vt---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (459)
.+.|-=.-.++||++|.+ .|++|. +++..... ++... + ..+ .+..+|.+ +.....+...+....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~---e~~~i---p-~~g-~~~~~~sg---g~~~~~~~~~~~~~~ 73 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY---QNLGI---P-IIG-PTKELPSG---GFSYQSLRGLLRDLR 73 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH---hhCCC---c-eeC-CCCCCCCC---CccCCCHHHHHHHHH
Confidence 345555678899999998 699999 98875432 22110 0 012 33333321 111233333333333
Q ss_pred H-hccHH--HHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCC--CCC
Q 012652 87 Q-VMPGK--LEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIID--SNG 161 (459)
Q Consensus 87 ~-~~~~~--~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 161 (459)
. ..... ...+++... .+||+|++-.-+. ...+|+..|+|++.+.+.-.- +.- ..+
T Consensus 74 ~gl~~~~~~~~~~~~~~~----~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn---------------~~~~~~~~ 133 (396)
T TIGR03492 74 AGLVGLTLGQWRALRKWA----KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSD---------------YYWESGPR 133 (396)
T ss_pred hhHHHHHHHHHHHHHHHh----hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccc---------------eeecCCCC
Confidence 2 21121 122333411 2899999876655 777899999999986543221 010 000
Q ss_pred CccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCCccccc
Q 012652 162 TPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIPELLPV 241 (459)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~v~~v 241 (459)
. ...+....++|....++ + ++.+ ..+.++.+++.+...-+.. ....-++.+|
T Consensus 134 ~-~~~~~~~~~~G~~~~p~-e--~n~l-----------------------~~~~a~~v~~~~~~t~~~l-~~~g~k~~~v 185 (396)
T TIGR03492 134 R-SPSDEYHRLEGSLYLPW-E--RWLM-----------------------RSRRCLAVFVRDRLTARDL-RRQGVRASYL 185 (396)
T ss_pred C-ccchhhhccCCCccCHH-H--HHHh-----------------------hchhhCEEeCCCHHHHHHH-HHCCCeEEEe
Confidence 0 00011111122221111 0 0000 0134556666664433332 2222378899
Q ss_pred cccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhC----CCCEEEEEcCCCCCC
Q 012652 242 GPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEIC----NRPFLWVVRPDITTD 317 (459)
Q Consensus 242 Gp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~ 317 (459)
|-...+.... .... -+ .++.++|.+--||-..--.+.+..++++++.+ +..|++.+.+...
T Consensus 186 GnPv~d~l~~-------~~~~----~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~-- 250 (396)
T TIGR03492 186 GNPMMDGLEP-------PERK----PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS-- 250 (396)
T ss_pred CcCHHhcCcc-------cccc----cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC--
Confidence 9555443221 0100 01 12345777777776322223345566666443 4567777643310
Q ss_pred CCCCCChhHHHHhc-------------------CCceeecccc-hhhhhcCCCccceeeccCchhHHHhhhcCCceeccc
Q 012652 318 ANDVYPRGFQERVA-------------------TRGQMIGWAP-QQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 377 (459)
Q Consensus 318 ~~~~~~~~~~~~~~-------------------~nv~i~~~vp-q~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P 377 (459)
.+.+.+... +++.+..+.. ..+++..+|+ +|+-+|..| .|++..|+|+|++|
T Consensus 251 -----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip 322 (396)
T TIGR03492 251 -----LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLP 322 (396)
T ss_pred -----HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEe
Confidence 011211111 1244545543 4579999998 999999777 99999999999999
Q ss_pred cccccchhhhhhhcee----eeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 012652 378 YFVDQFLNESYICDIW----KVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNF 453 (459)
Q Consensus 378 ~~~DQ~~na~rv~~~~----G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 453 (459)
....|. |+...++ . |.++.+. ..+.+.|.+++.++++|++.+++.. +..++...+++++.+..+.+
T Consensus 323 ~~~~q~-na~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~---~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 323 GKGPQF-TYGFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCR---RNGQERMGPPGASARIAESI 392 (396)
T ss_pred CCCCHH-HHHHHHh-hHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHH---HHHHHhcCCCCHHHHHHHHH
Confidence 777786 8876654 2 6666663 3456999999999999986655444 22222223345554444444
Q ss_pred H
Q 012652 454 L 454 (459)
Q Consensus 454 ~ 454 (459)
.
T Consensus 393 ~ 393 (396)
T TIGR03492 393 L 393 (396)
T ss_pred H
Confidence 3
No 45
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.42 E-value=4.7e-10 Score=110.11 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=62.9
Q ss_pred cCCceeecccchhh---hhcCCCccceeec-cC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFLSH-CG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I~H-gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.++|.+.+++|+.+ +|..+++-++-+. .| ..++.||+++|+|+|+. |.......+.+ -..|..++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~-~~~G~lv~----- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITD-GENGLLVD----- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhccc-CCceEEcC-----
Confidence 36788899999764 7788888222232 22 24789999999999987 44455555655 25677664
Q ss_pred cccHHHHHHHHHHHhCCHHHHHH
Q 012652 406 IITGEEISNKLVQVLGDQNFKAR 428 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll~~~~~~~~ 428 (459)
.-+++++.++|.++++|++.+++
T Consensus 350 ~~d~~~la~~i~~ll~~~~~~~~ 372 (396)
T cd03818 350 FFDPDALAAAVIELLDDPARRAR 372 (396)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHH
Confidence 34699999999999999864443
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.42 E-value=7.3e-10 Score=111.00 Aligned_cols=133 Identities=15% Similarity=0.141 Sum_probs=84.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhHHHHh-cCCceeecccchh---hhhcCCC
Q 012652 276 VIYVAFGSHTVLDHNQFQELALGLEIC-NRPFLWVVRPDITTDANDVYPRGFQERV-ATRGQMIGWAPQQ---RVLSHPS 350 (459)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~i~~~vpq~---~iL~~~~ 350 (459)
.+++..|+.. ..+.+..++++++.. +.+++++. ++ ...+.+.+.. ..+|.+.+++++. .++..+|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG-~G-------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVG-DG-------PYREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEe-CC-------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 4556668764 334466677777665 34555443 32 1112222222 2578888999865 4899999
Q ss_pred ccceeeccC----chhHHHhhhcCCceeccccccccchhhhhhhc---eeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 351 IACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNESYICD---IWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 351 ~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~---~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
+ ||.-.. ..++.||+++|+|+|+....+ ....+.+ . +.|..++ .-+.+++.++|.++++|+
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~-----~~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYT-----PGDVDDCVEKLETLLADP 401 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeC-----CCCHHHHHHHHHHHHhCH
Confidence 8 775433 357889999999999875432 2223332 2 6787774 336899999999999988
Q ss_pred HHHHHHH
Q 012652 424 NFKARAL 430 (459)
Q Consensus 424 ~~~~~a~ 430 (459)
+.+++..
T Consensus 402 ~~~~~~~ 408 (465)
T PLN02871 402 ELRERMG 408 (465)
T ss_pred HHHHHHH
Confidence 6554433
No 47
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.39 E-value=7.4e-13 Score=109.64 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=81.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKV 85 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (459)
|+|.+.++.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++.... ..............
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDSR-LPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCGG-GGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCcC-cCcccchhhhhhhH
Confidence 78999999999999999999999999999999999999999776 999999876500 00000011111111
Q ss_pred HH---hccHHHHHHHHHHh-C-----CCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchh
Q 012652 86 LQ---VMPGKLEELIEEIN-G-----RDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAA 140 (459)
Q Consensus 86 ~~---~~~~~~~~l~~~l~-~-----~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~ 140 (459)
.. .... ..+.+.... + ......|+++.+.....+..+|+++|||++.....+.+
T Consensus 71 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEE-AMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHH-HHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhH-HHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11 1111 112222111 1 00146888888887778999999999999998777664
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.39 E-value=6.9e-10 Score=106.87 Aligned_cols=137 Identities=14% Similarity=0.125 Sum_probs=84.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhC---CCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhh---hhc
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEIC---NRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQR---VLS 347 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~---iL~ 347 (459)
++.+++..|+... .+.+..+++++..+ +.+++++..... ...........+++.+.+++++.+ ++.
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~G~~~~------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIVGNGLE------LEEESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEEcCchh------hhHHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 4466777787632 22334445554333 455554433220 000000001347888999997654 799
Q ss_pred CCCccceeec----cC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 348 HPSIACFLSH----CG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 348 ~~~~~~~I~H----gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
.+++ +|+. .| ..++.||+++|+|+|+.+. ......+.+ -+.|..++ .-+.+++.+++.++++|
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~-----~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRD-GVNGLLFP-----PGDAEDLAAALERLIDD 329 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcC-CCcEEEEC-----CCCHHHHHHHHHHHHhC
Confidence 9998 6632 33 3578999999999998743 445666665 25788774 34589999999999998
Q ss_pred HHHHHHHH
Q 012652 423 QNFKARAL 430 (459)
Q Consensus 423 ~~~~~~a~ 430 (459)
++.++.+.
T Consensus 330 ~~~~~~~~ 337 (359)
T cd03823 330 PDLLERLR 337 (359)
T ss_pred hHHHHHHH
Confidence 86554443
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.36 E-value=3.5e-10 Score=110.07 Aligned_cols=345 Identities=15% Similarity=0.055 Sum_probs=170.1
Q ss_pred EEEEEcCCC----ccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 5 HILVFSTPA----QGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 5 ~il~~~~~~----~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
||+|++... .|+-.....+++.|+++||+|++++....................++++..++....... .....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 78 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKN--GLLKR 78 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCcc--chHHH
Confidence 577666432 489999999999999999999999875433322110000000113566655543222111 11111
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc----hHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCC
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG----WSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGI 156 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~----~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (459)
....+ .........+.. .. .+||+|++..... .+..++...++|++...+..........
T Consensus 79 ~~~~~-~~~~~~~~~~~~--~~---~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~---------- 142 (394)
T cd03794 79 LLNYL-SFALSALLALLK--RR---RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVAL---------- 142 (394)
T ss_pred HHhhh-HHHHHHHHHHHh--cc---cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHc----------
Confidence 11111 111111111221 12 8999999986211 3445566679999975543221000000
Q ss_pred CCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHH-HhhccCCEEEEcCCccCchhh-hcc
Q 012652 157 IDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTI-KAMKVADFQFCNSTYELEPGA-FNM 234 (459)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~-~~~ 234 (459)
... . .. ........... .....++.+++.+....+.-. ...
T Consensus 143 -------------------~~~-----------~-~~------~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~ 185 (394)
T cd03794 143 -------------------GLL-----------K-NG------SLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGV 185 (394)
T ss_pred -------------------cCc-----------c-cc------chHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCC
Confidence 000 0 00 00001111111 123567888888766544321 011
Q ss_pred -CCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhhC-CCCEEEEEc
Q 012652 235 -IPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTV-LDHNQFQELALGLEIC-NRPFLWVVR 311 (459)
Q Consensus 235 -~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~ 311 (459)
..++..+........... ........... ..+++.+++..|+... ...+.+...+..+... +.+++++ +
T Consensus 186 ~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G 257 (394)
T cd03794 186 PPEKISVIPNGVDLELFKP-----PPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-G 257 (394)
T ss_pred CcCceEEcCCCCCHHHcCC-----ccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-C
Confidence 123333432221111000 00000001111 1234577777887642 2223333333333332 3444443 3
Q ss_pred CCCCCCCCCCCChhHHH----HhcCCceeecccchhh---hhcCCCccceeeccC---------chhHHHhhhcCCceec
Q 012652 312 PDITTDANDVYPRGFQE----RVATRGQMIGWAPQQR---VLSHPSIACFLSHCG---------WNSTMEGVSNGIPFLC 375 (459)
Q Consensus 312 ~~~~~~~~~~~~~~~~~----~~~~nv~i~~~vpq~~---iL~~~~~~~~I~HgG---------~~s~~eal~~gvP~v~ 375 (459)
.. ...+.+.+ ...+|+.+.+++++.+ ++..+++ +|.... .+++.||+++|+|+|+
T Consensus 258 ~~-------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~ 328 (394)
T cd03794 258 DG-------PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLA 328 (394)
T ss_pred Cc-------ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEE
Confidence 32 01122222 2347888999998764 7888888 664322 2347999999999999
Q ss_pred cccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 376 WPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 376 ~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
.+..+.+. .+.+ .+.|..++ .-+.+++.++|.+++.|++.+++..+
T Consensus 329 ~~~~~~~~----~~~~-~~~g~~~~-----~~~~~~l~~~i~~~~~~~~~~~~~~~ 374 (394)
T cd03794 329 SVDGESAE----LVEE-AGAGLVVP-----PGDPEALAAAILELLDDPEERAEMGE 374 (394)
T ss_pred ecCCCchh----hhcc-CCcceEeC-----CCCHHHHHHHHHHHHhChHHHHHHHH
Confidence 97655433 3333 26677664 33789999999999988865554443
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.34 E-value=2.3e-09 Score=103.65 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=62.0
Q ss_pred cCCceeecccchhh---hhcCCCccceeecc----CchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCC
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE 403 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I~Hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 403 (459)
.+|+.+.+++|+.+ ++..+++ +|..+ ...++.||+++|+|+|+.. ....+..+.+ -+.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~-~~~g~~~~~-- 328 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVAD-GENGFLFPP-- 328 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheec-CceeEEeCC--
Confidence 47888999999764 7889888 66433 3478999999999999874 4445566665 377887753
Q ss_pred CCcccHHHHHHHHHHHhCCHHHH
Q 012652 404 SGIITGEEISNKLVQVLGDQNFK 426 (459)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~ 426 (459)
. +. ++.+++.++++|++.+
T Consensus 329 -~--~~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 329 -G--DE-ALAEALLRLLQDPELR 347 (374)
T ss_pred -C--CH-HHHHHHHHHHhChHHH
Confidence 2 22 9999999999988643
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.33 E-value=3.1e-09 Score=102.25 Aligned_cols=343 Identities=14% Similarity=0.119 Sum_probs=179.5
Q ss_pred EEEEEcCC---C-ccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 5 HILVFSTP---A-QGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 5 ~il~~~~~---~-~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
||++++.. . .|+......+++.|.+.||+|++++............ ........ .. .....
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-------~~~~~~~~-----~~--~~~~~- 65 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-------GGIVVVRP-----PP--LLRVR- 65 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-------cCcceecC-----Cc--ccccc-
Confidence 45655532 2 6899999999999999999999999865433221110 00000000 00 00000
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHH--HHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCC
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSM--EVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIID 158 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~--~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (459)
...........+..+++. .+||+|+......... ..+...++|++..........
T Consensus 66 -~~~~~~~~~~~~~~~~~~------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------------- 122 (374)
T cd03801 66 -RLLLLLLLALRLRRLLRR------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR---------------- 122 (374)
T ss_pred -hhHHHHHHHHHHHHHhhh------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc----------------
Confidence 001111112233444444 8999999887665433 467888999997655433200
Q ss_pred CCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHH-HHHhhccCCEEEEcCCccCchhhhccCC-
Q 012652 159 SNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIR-TIKAMKVADFQFCNSTYELEPGAFNMIP- 236 (459)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~p- 236 (459)
.... . ......... ........+.+++.+....+.-......
T Consensus 123 -----------------~~~~----------~---------~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~ 166 (374)
T cd03801 123 -----------------PGNE----------L---------GLLLKLARALERRALRRADRIIAVSEATREELRELGGVP 166 (374)
T ss_pred -----------------cccc----------h---------hHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCC
Confidence 0000 0 000111111 1122456788888887665544222222
Q ss_pred --ccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhC-----CCCEEEE
Q 012652 237 --ELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEIC-----NRPFLWV 309 (459)
Q Consensus 237 --~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~ 309 (459)
++..+.......... +.......-. ...++..+++.+|+.. ..+-+..+++++..+ +.++++.
T Consensus 167 ~~~~~~i~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~ 236 (374)
T cd03801 167 PEKITVIPNGVDTERFR-------PAPRAARRRL-GIPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIV 236 (374)
T ss_pred CCcEEEecCcccccccC-------ccchHHHhhc-CCcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEE
Confidence 444444322211100 0000000111 1123446677778754 223344444554332 2333333
Q ss_pred EcCCCCCCCCCCCChhHHH-----HhcCCceeecccchh---hhhcCCCccceee----ccCchhHHHhhhcCCceeccc
Q 012652 310 VRPDITTDANDVYPRGFQE-----RVATRGQMIGWAPQQ---RVLSHPSIACFLS----HCGWNSTMEGVSNGIPFLCWP 377 (459)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~-----~~~~nv~i~~~vpq~---~iL~~~~~~~~I~----HgG~~s~~eal~~gvP~v~~P 377 (459)
+.. .....+.+ ..++++.+.+++++. +++..+++ +|. -|..+++.||+++|+|+|+.+
T Consensus 237 -G~~-------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~ 306 (374)
T cd03801 237 -GDG-------PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASD 306 (374)
T ss_pred -eCc-------HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeC
Confidence 322 11111211 145789999999755 48999888 663 245678999999999999875
Q ss_pred cccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhhhhcCCChHHHHHHHHH
Q 012652 378 YFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKE-ITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 378 ~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~-~~~~~~~~~g~~~~~~~~~~~ 455 (459)
. ...+..+.+ -+.|...+ ..+.+++.++|.+++.|++.++...+-+. .+.+ .-+-+...+++++
T Consensus 307 ~----~~~~~~~~~-~~~g~~~~-----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 371 (374)
T cd03801 307 V----GGIPEVVED-GETGLLVP-----PGDPEALAEAILRLLDDPELRRRLGEAARERVAE----RFSWDRVAARTEE 371 (374)
T ss_pred C----CChhHHhcC-CcceEEeC-----CCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 4 456666665 37787774 34689999999999999865544333222 3333 2444444455544
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.31 E-value=2.4e-09 Score=105.50 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCceee-cccchhh---hhcCCCccceee-c------cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeee
Q 012652 332 TRGQMI-GWAPQQR---VLSHPSIACFLS-H------CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLD 400 (459)
Q Consensus 332 ~nv~i~-~~vpq~~---iL~~~~~~~~I~-H------gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~ 400 (459)
+|+.+. +|+|..+ +|..+|+ +|+ + |-.+++.||+++|+|+|+.. .......+++ -+.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~-~~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKH-GENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcC-CCCEEEE-
Confidence 455555 6888654 7889998 663 1 12457999999999999973 3345566666 3678776
Q ss_pred cCCCCcccHHHHHHHHHHHhCC
Q 012652 401 KDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
. +.++|.++|.++++|
T Consensus 366 ----~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 366 ----G--DSEELAEQLIDLLSN 381 (415)
T ss_pred ----C--CHHHHHHHHHHHHhc
Confidence 2 689999999999998
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.30 E-value=5.7e-09 Score=100.15 Aligned_cols=320 Identities=14% Similarity=0.104 Sum_probs=165.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKR-VMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIE 83 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (459)
||++++....|+......++++|.++||+|++++....... ... .++++..++..... ........
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~ 67 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA---------LGVKVIPIPLDRRG----INPFKDLK 67 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc---------CCceEEeccccccc----cChHhHHH
Confidence 58888877789999999999999999999999998655432 222 36666666533210 11111111
Q ss_pred HHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCC
Q 012652 84 KVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNG 161 (459)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (459)
.+ ..+..+++. .+||+|++..... .+..++...+.|.+...........
T Consensus 68 ~~-----~~~~~~~~~------~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------ 118 (359)
T cd03808 68 AL-----LRLYRLLRK------ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------ 118 (359)
T ss_pred HH-----HHHHHHHHh------cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------------
Confidence 11 123334444 8999998875543 2334444356655543322111000
Q ss_pred CccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC---Ccc
Q 012652 162 TPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI---PEL 238 (459)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---p~v 238 (459)
..... . ........+. ....++.+++.+....+.-..... ...
T Consensus 119 ------------~~~~~-----~---------------~~~~~~~~~~--~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~ 164 (359)
T cd03808 119 ------------TSGGL-----K---------------RRLYLLLERL--ALRFTDKVIFQNEDDRDLALKLGIIKKKKT 164 (359)
T ss_pred ------------ccchh-----H---------------HHHHHHHHHH--HHhhccEEEEcCHHHHHHHHHhcCCCcCce
Confidence 00000 0 1111111111 124457777777655443311111 122
Q ss_pred ccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhhC--CCCEEEEEcCCCC
Q 012652 239 LPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTV-LDHNQFQELALGLEIC--NRPFLWVVRPDIT 315 (459)
Q Consensus 239 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~ 315 (459)
..+.|...+.... .+.... ..+++.+++..|+... ...+.+-.++..+.+. +.+++++....
T Consensus 165 ~~~~~~~~~~~~~------~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~-- 229 (359)
T cd03808 165 VLIPGSGVDLDRF------SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD-- 229 (359)
T ss_pred EEecCCCCChhhc------Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC--
Confidence 2222221111100 000000 1234577888887642 2223333333333322 23444443322
Q ss_pred CCCCCCCChhH-HHH--hcCCceeecccch-hhhhcCCCccceeeccC----chhHHHhhhcCCceeccccccccchhhh
Q 012652 316 TDANDVYPRGF-QER--VATRGQMIGWAPQ-QRVLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNES 387 (459)
Q Consensus 316 ~~~~~~~~~~~-~~~--~~~nv~i~~~vpq-~~iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~ 387 (459)
........ ... ..+++.+.++..+ ..++..+++ +|..+. .+++.||+++|+|+|+.+.. .+..
T Consensus 230 ---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~ 300 (359)
T cd03808 230 ---EENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCRE 300 (359)
T ss_pred ---cchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchh
Confidence 00000100 111 2356777777544 368999988 775443 57899999999999987443 3445
Q ss_pred hhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHH
Q 012652 388 YICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARAL 430 (459)
Q Consensus 388 rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 430 (459)
.+.+ .+.|..++ .-+.+++.++|.+++.|++.++...
T Consensus 301 ~i~~-~~~g~~~~-----~~~~~~~~~~i~~l~~~~~~~~~~~ 337 (359)
T cd03808 301 AVID-GVNGFLVP-----PGDAEALADAIERLIEDPELRARMG 337 (359)
T ss_pred hhhc-CcceEEEC-----CCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 5555 36777774 3478999999999999886554433
No 54
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.3e-10 Score=101.99 Aligned_cols=295 Identities=18% Similarity=0.189 Sum_probs=181.7
Q ss_pred CEEEEEcCC----CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChH
Q 012652 4 PHILVFSTP----AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPG 79 (459)
Q Consensus 4 ~~il~~~~~----~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (459)
|||+|.+-+ +.||+.+++.||++|.++|..++|++.+...+.+.+.. .++.+....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~~~------------- 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLEGR------------- 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccceeee-------------
Confidence 688988844 55999999999999999999999999877665443320 012211100
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcch---HHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCC
Q 012652 80 KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGW---SMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGI 156 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~---~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~ 156 (459)
....+++ .++|++|.|..... ...+..+.|.+.+.+-.-...++.-
T Consensus 61 -------------~~n~ik~------~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d------------ 109 (318)
T COG3980 61 -------------GNNLIKE------EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKD------------ 109 (318)
T ss_pred -------------ccccccc------ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhh------------
Confidence 0113344 89999999988663 4566778899999865433321110
Q ss_pred CCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccCC
Q 012652 157 IDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMIP 236 (459)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p 236 (459)
.++..+.... .+....+.+. .
T Consensus 110 ------------------------~d~ivN~~~~------------------------------a~~~y~~v~~-----k 130 (318)
T COG3980 110 ------------------------NDLIVNAILN------------------------------ANDYYGLVPN-----K 130 (318)
T ss_pred ------------------------hHhhhhhhhc------------------------------chhhccccCc-----c
Confidence 0000000000 0000011100 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC
Q 012652 237 ELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITT 316 (459)
Q Consensus 237 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 316 (459)
..++.||-...-... |....+ +-+ .+ +.--|++++|. +.+..+.-.++..+.+.++.+-++++..
T Consensus 131 ~~~~lGp~y~~lr~e-----F~~~r~---~~~-~r-~~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~--- 195 (318)
T COG3980 131 TRYYLGPGYAPLRPE-----FYALRE---ENT-ER-PKRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSS--- 195 (318)
T ss_pred eEEEecCCceeccHH-----HHHhHH---HHh-hc-chheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCC---
Confidence 124455433221100 011111 111 11 23359999994 3355577778888887776666666532
Q ss_pred CCCCCCChhHHHHh--cCCceeecccc-hhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhcee
Q 012652 317 DANDVYPRGFQERV--ATRGQMIGWAP-QQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIW 393 (459)
Q Consensus 317 ~~~~~~~~~~~~~~--~~nv~i~~~vp-q~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~ 393 (459)
.+...+..++. .+|+.+..... ...++..|++ .|+-||. |++|++.-|+|.+++|+...|-..|...+. +
T Consensus 196 ---~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-l 268 (318)
T COG3980 196 ---NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-L 268 (318)
T ss_pred ---CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-c
Confidence 22223333332 36666665555 4569999998 9998875 889999999999999999999999999987 6
Q ss_pred eeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 012652 394 KVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKE 434 (459)
Q Consensus 394 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 434 (459)
|+-..+. -.++......-+.++..|+..|.+...-.+
T Consensus 269 g~~~~l~----~~l~~~~~~~~~~~i~~d~~~rk~l~~~~~ 305 (318)
T COG3980 269 GIIKQLG----YHLKDLAKDYEILQIQKDYARRKNLSFGSK 305 (318)
T ss_pred Cchhhcc----CCCchHHHHHHHHHhhhCHHHhhhhhhccc
Confidence 8887775 347888888888999998887776654443
No 55
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.26 E-value=9.8e-09 Score=100.74 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=65.0
Q ss_pred cCCceeecccchhh---hhcCCCccceeecc----CchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCC
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE 403 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I~Hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 403 (459)
.+|+.+.+++|+.+ ++..+++ +++.+ -..++.||+++|+|+|+.... .....+++ -+.|..++
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~-~~~g~~~~--- 351 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVD-GVTGLLVD--- 351 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccC-CCCeEEeC---
Confidence 36788999999865 6899888 77542 236899999999999987543 35555666 37888874
Q ss_pred CCcccHHHHHHHHHHHhCCHHHHHH
Q 012652 404 SGIITGEEISNKLVQVLGDQNFKAR 428 (459)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~~~ 428 (459)
.-+.+++.++|.++++|++.+++
T Consensus 352 --~~~~~~l~~~i~~l~~~~~~~~~ 374 (398)
T cd03800 352 --PRDPEALAAALRRLLTDPALRRR 374 (398)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHH
Confidence 33699999999999998754433
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.25 E-value=1e-08 Score=99.73 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=72.1
Q ss_pred cCCceeecccch-hhhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 331 ATRGQMIGWAPQ-QRVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~~~vpq-~~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.+++.+.++.++ .+++..+++ +|.- |...++.||+++|+|+|+. |....+..+.+ -..|..++
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~-~~~G~~~~----- 319 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKH-GETGFLVD----- 319 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcC-CCceEEcC-----
Confidence 457888888775 468999888 6632 3356999999999999986 44445555655 25676664
Q ss_pred cccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 406 IITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
.-+.+++.+++.++++|++.+++.++- .++.+...-+....++++.+.+
T Consensus 320 ~~~~~~l~~~i~~l~~~~~~~~~~~~~---~~~~~~~~fs~~~~~~~~~~~y 368 (371)
T cd04962 320 VGDVEAMAEYALSLLEDDELWQEFSRA---ARNRAAERFDSERIVPQYEALY 368 (371)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHH---HHHHHHHhCCHHHHHHHHHHHH
Confidence 347899999999999987644433322 2221111244445555555443
No 57
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.24 E-value=9.5e-09 Score=99.51 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=73.9
Q ss_pred hcCCceeecccc-hh---hhhcCCCccceeecc----CchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeec
Q 012652 330 VATRGQMIGWAP-QQ---RVLSHPSIACFLSHC----GWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDK 401 (459)
Q Consensus 330 ~~~nv~i~~~vp-q~---~iL~~~~~~~~I~Hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~ 401 (459)
...++...+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+... ......+.+ -+.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~-~~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDH-GVTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeC-CCceEEeC-
Confidence 346677889998 43 47899888 77753 35789999999999998743 333344444 25676663
Q ss_pred CCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 402 DESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
..+.+++.+++.++++|++.+++ +++..++.+...-+.+...+++++-+
T Consensus 314 ----~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 314 ----PGDPEDLAEGIEWLLADPDEREE---LGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44789999999999998763332 33333333222345556666665543
No 58
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.21 E-value=1.5e-08 Score=99.34 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=61.7
Q ss_pred cCCceeecccchh---hhhcCCCccceeecc---C-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCC
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE 403 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 403 (459)
.++|.+.+++|+. .++..+++ ++... | ..++.||+++|+|+|+.-. ......+.+ -+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~-~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVD-GETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhcc-CCceEEeC---
Confidence 4688999999976 47888888 66422 2 3578899999999999733 334444555 25676663
Q ss_pred CCcccHHHHHHHHHHHhCCHHHHHH
Q 012652 404 SGIITGEEISNKLVQVLGDQNFKAR 428 (459)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~~~ 428 (459)
. +.+++.++|.++++|++.+++
T Consensus 349 --~-~~~~~a~~i~~l~~~~~~~~~ 370 (392)
T cd03805 349 --P-TPEEFAEAMLKLANDPDLADR 370 (392)
T ss_pred --C-CHHHHHHHHHHHHhChHHHHH
Confidence 2 789999999999998864433
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.21 E-value=2e-08 Score=95.91 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=65.1
Q ss_pred cCCceeecccch-hhhhcCCCccceeeccC----chhHHHhhhcCCceeccccccccchhhhhhhceee-eeeeeecCCC
Q 012652 331 ATRGQMIGWAPQ-QRVLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWK-VGLKLDKDES 404 (459)
Q Consensus 331 ~~nv~i~~~vpq-~~iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G-~G~~~~~~~~ 404 (459)
..++.+.++... ..++..+++ +|.-.. .+++.||+++|+|+|+.+..+.+ ..+.+ .| .|..++
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~-~~~~g~~~~---- 302 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIE-DGVNGLLVP---- 302 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhc-cCcceEEeC----
Confidence 356667776333 468999888 775542 57899999999999987544332 22333 24 777774
Q ss_pred CcccHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 012652 405 GIITGEEISNKLVQVLGDQNFKARALELKEIT 436 (459)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 436 (459)
..+.+++.++|.+++.|++.+++..+-+..+
T Consensus 303 -~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 303 -NGDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred -CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 4468999999999999998766665544333
No 60
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.21 E-value=1.3e-08 Score=100.86 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=59.3
Q ss_pred hhhhcCCCccceeec-----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHH
Q 012652 343 QRVLSHPSIACFLSH-----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLV 417 (459)
Q Consensus 343 ~~iL~~~~~~~~I~H-----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~ 417 (459)
..++..+|+ ++.. ||..++.||+++|+|+|+.|...++......+.+ .|.++... +.++|.+++.
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~~-------d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQVE-------DAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEEC-------CHHHHHHHHH
Confidence 368889887 4432 3444689999999999999988888887777766 47766542 5899999999
Q ss_pred HHhCCHHHHHHHH
Q 012652 418 QVLGDQNFKARAL 430 (459)
Q Consensus 418 ~ll~~~~~~~~a~ 430 (459)
++++|++.+++..
T Consensus 384 ~ll~~~~~~~~m~ 396 (425)
T PRK05749 384 YLLTDPDARQAYG 396 (425)
T ss_pred HHhcCHHHHHHHH
Confidence 9999986554443
No 61
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.21 E-value=2.9e-08 Score=95.81 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=63.3
Q ss_pred cCCceeecccchh---hhhcCCCccceee----ccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCC
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLS----HCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE 403 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~----HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 403 (459)
.+|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+ .+.|...+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~-~~~g~~~~--- 327 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITD-GENGLLVP--- 327 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcC-CcceeEEC---
Confidence 4788899999975 57888888 552 2456789999999999998754 334555665 36677773
Q ss_pred CCcccHHHHHHHHHHHhCCHHH
Q 012652 404 SGIITGEEISNKLVQVLGDQNF 425 (459)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~ 425 (459)
.-+.+++.++|.++++++..
T Consensus 328 --~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 328 --PGDPEALAEAILRLLADPWL 347 (377)
T ss_pred --CCCHHHHHHHHHHHhcCcHH
Confidence 45799999999999998874
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.20 E-value=1.4e-09 Score=105.53 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=95.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhC-----CCCEEEEEcCCCCCCCCCCCChhHHHH--hcCCceeecccchh---
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEIC-----NRPFLWVVRPDITTDANDVYPRGFQER--VATRGQMIGWAPQQ--- 343 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~i~~~vpq~--- 343 (459)
++.|+++.+..... .+.+..+++++..+ +.++++...++ ......+.+. ..+++.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN------PVVREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC------hHHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 34677765432211 13466677776543 34555554332 0111112222 23578888766654
Q ss_pred hhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 344 RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 344 ~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
.++..+++ +|+.+|.. +.||+++|+|+|+++..++++. +.+ .|.++.+. -++++|.+++.++++|+
T Consensus 270 ~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 270 NLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TDKENITKAAKRLLTDP 335 (365)
T ss_pred HHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CCHHHHHHHHHHHHhCh
Confidence 57788887 99987654 7999999999999876555542 233 37776553 26899999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 424 NFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 424 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
+.+++..+-. +...+++++.+.++.+.+
T Consensus 336 ~~~~~~~~~~----~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 336 DEYKKMSNAS----NPYGDGEASERIVEELLN 363 (365)
T ss_pred HHHHHhhhcC----CCCcCchHHHHHHHHHHh
Confidence 7766654322 223345666665555443
No 63
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.19 E-value=7.5e-09 Score=96.96 Aligned_cols=300 Identities=16% Similarity=0.059 Sum_probs=162.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY--NHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (459)
|||.|--... -|+.-+..+.++|.++||+|.+.+-+. ..+.++.. ++++..+...- .++...
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y---------g~~y~~iG~~g------~~~~~K 64 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY---------GIDYIVIGKHG------DSLYGK 64 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc---------CCCeEEEcCCC------CCHHHH
Confidence 4666555333 499999999999999999999998653 33445544 78887765321 222222
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNG 161 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (459)
..... ....++++.+++ .+||++|+- ..+.+..+|..+|+|+|.+.-+.........
T Consensus 65 l~~~~----~R~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~L--------------- 121 (335)
T PF04007_consen 65 LLESI----ERQYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRL--------------- 121 (335)
T ss_pred HHHHH----HHHHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcccee---------------
Confidence 22222 223445555554 899999975 4567888899999999998876543211100
Q ss_pred CccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEE-EcCCccCchhhhccCCcccc
Q 012652 162 TPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQF-CNSTYELEPGAFNMIPELLP 240 (459)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~p~v~~ 240 (459)
.+|.... +..+.. +-......+ ..+ +.+. .++..++- |
T Consensus 122 ---------t~Pla~~----------i~~P~~--------~~~~~~~~~--G~~-~~i~~y~G~~E~a-----------y 160 (335)
T PF04007_consen 122 ---------TLPLADV----------IITPEA--------IPKEFLKRF--GAK-NQIRTYNGYKELA-----------Y 160 (335)
T ss_pred ---------ehhcCCe----------eECCcc--------cCHHHHHhc--CCc-CCEEEECCeeeEE-----------e
Confidence 0010000 000000 000000000 000 0111 22222221 1
Q ss_pred ccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcc----cCCHHHHHHHHHHHhhCCCCEEEEEcCCCCC
Q 012652 241 VGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHT----VLDHNQFQELALGLEICNRPFLWVVRPDITT 316 (459)
Q Consensus 241 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 316 (459)
+=| ...|++..+-+.- ++++.|++-+.+.. ......+..+++.+++.+..+|......
T Consensus 161 l~~--------------F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~--- 222 (335)
T PF04007_consen 161 LHP--------------FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE--- 222 (335)
T ss_pred ecC--------------CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc---
Confidence 111 1233344444542 35678888886641 1233557778888888777644443322
Q ss_pred CCCCCCChhHHHHhcCCceee-cccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeee
Q 012652 317 DANDVYPRGFQERVATRGQMI-GWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKV 395 (459)
Q Consensus 317 ~~~~~~~~~~~~~~~~nv~i~-~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~ 395 (459)
..++.+ +.. ++.+. .-++-.++|.++++ ||+=|| +...||...|+|.|.+ +-++-...-+.+.+ .|.
T Consensus 223 ----~~~~~~-~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gl 290 (335)
T PF04007_consen 223 ----DQRELF-EKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KGL 290 (335)
T ss_pred ----chhhHH-hcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CCC
Confidence 111111 111 23333 55666689999998 999877 6777999999999974 22222223344555 366
Q ss_pred eeeeecCCCCcccHHHHHHHHHHHh
Q 012652 396 GLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 396 G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
-. ..-+.+++.+.+.+.+
T Consensus 291 l~-------~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 291 LY-------HSTDPDEIVEYVRKNL 308 (335)
T ss_pred eE-------ecCCHHHHHHHHHHhh
Confidence 32 3346777777555544
No 64
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.19 E-value=4.2e-08 Score=96.86 Aligned_cols=160 Identities=7% Similarity=0.051 Sum_probs=90.1
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhC----CCCEEEEEcCCCCCCCCCCCChhHHHH----hcCCceeecccchh--
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEIC----NRPFLWVVRPDITTDANDVYPRGFQER----VATRGQMIGWAPQQ-- 343 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~nv~i~~~vpq~-- 343 (459)
++.+++..|+.. ..+-+..++++++.+ +.++++ ++.+ ...+.+.+. ..+||.+.+++|+.
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~i-vG~g-------~~~~~l~~~~~~~~l~~v~f~G~~~~~~~ 297 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVI-CGQG-------GGKARLEKMAQCRGLPNVHFLPLQPYDRL 297 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEE-ECCC-------hhHHHHHHHHHHcCCCceEEeCCCCHHHH
Confidence 335666678764 333455555555433 233443 3332 111222221 12478888999875
Q ss_pred -hhhcCCCccceeeccCc------hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHH
Q 012652 344 -RVLSHPSIACFLSHCGW------NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKL 416 (459)
Q Consensus 344 -~iL~~~~~~~~I~HgG~------~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i 416 (459)
+++..+|+.++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+.++ .-+.++|.++|
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~-----~~d~~~la~~i 367 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVE-----PESVEALVAAI 367 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeC-----CCCHHHHHHHH
Confidence 47999998555444332 3468999999999998643211 11222 2 5677664 34689999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 417 VQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 417 ~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
.++++|++.+++ |++..++.+...-+....++++++.
T Consensus 368 ~~l~~~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~ 404 (412)
T PRK10307 368 AALARQALLRPK---LGTVAREYAERTLDKENVLRQFIAD 404 (412)
T ss_pred HHHHhCHHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999988754433 3333333332234444555555444
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.17 E-value=6.6e-08 Score=95.27 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=64.1
Q ss_pred cCCceeecccchh---hhhcCCCccceee---ccC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCC
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE 403 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~---HgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 403 (459)
.++|.+.+++|+. ++|..+|+ +|. +.| ..++.||+++|+|+|+... ......+.+ -+.|..++
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~--- 351 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVAD-GETGLLVD--- 351 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhcc-CCceEECC---
Confidence 3678899999865 58999998 663 223 4589999999999998743 334445555 36777664
Q ss_pred CCcccHHHHHHHHHHHhCCHHHHHHHH
Q 012652 404 SGIITGEEISNKLVQVLGDQNFKARAL 430 (459)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~~~a~ 430 (459)
.-+.+++.++|.++++|++.++++.
T Consensus 352 --~~d~~~la~~i~~~l~~~~~~~~~~ 376 (405)
T TIGR03449 352 --GHDPADWADALARLLDDPRTRIRMG 376 (405)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 3478999999999999876554443
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.14 E-value=5.9e-08 Score=93.64 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=87.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhCC-CCEEEEEcCCCCCCCCCCCChhHHH-----HhcCCceeecccchh---h
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEICN-RPFLWVVRPDITTDANDVYPRGFQE-----RVATRGQMIGWAPQQ---R 344 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~i~~~vpq~---~ 344 (459)
+..+++..|+.. ..+-+..++++++++. .+++++..+. ..+.+.+ ...+||.+.+|+|+. .
T Consensus 190 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 190 GRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 346677778764 3344666777776666 4444443322 1122222 134789999999975 4
Q ss_pred hhcCCCccceee---ccCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHh
Q 012652 345 VLSHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 345 iL~~~~~~~~I~---HgG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
++..+++-++-+ +.|. .++.||+++|+|+|+....+....... +. +.|...+ .-+.+++.++|.+++
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~-----~~d~~~~~~~i~~l~ 330 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVP-----PGDPAALAEAIRRLL 330 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeC-----CCCHHHHHHHHHHHH
Confidence 888888833333 2343 478999999999999855444332222 22 6676663 347999999999999
Q ss_pred CCHHHHHHH
Q 012652 421 GDQNFKARA 429 (459)
Q Consensus 421 ~~~~~~~~a 429 (459)
+|++.+++.
T Consensus 331 ~~~~~~~~~ 339 (357)
T cd03795 331 EDPELRERL 339 (357)
T ss_pred HCHHHHHHH
Confidence 998644433
No 67
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.12 E-value=2.1e-09 Score=104.33 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCcccC-CHHHHHHHHHHHhhCCC-CEEEEEcCCCCCCCCCCCChhHHH---Hh---cCCceeecccchh-
Q 012652 273 PKSVIYVAFGSHTVL-DHNQFQELALGLEICNR-PFLWVVRPDITTDANDVYPRGFQE---RV---ATRGQMIGWAPQQ- 343 (459)
Q Consensus 273 ~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~---~~---~~nv~i~~~vpq~- 343 (459)
+++.|++++|..... ..+.+..++++++.+.. +++++..... ...+.+.+ +. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------RTRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------ChHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 355788888875432 35667788888866543 2444443320 11122222 12 3678777766544
Q ss_pred --hhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhC
Q 012652 344 --RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLG 421 (459)
Q Consensus 344 --~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 421 (459)
.++..+|+ ||+.+| |.+.||+++|+|+|+++.. |. +..+.+ -|+++.+. . +.++|.+++.++++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~-----~-~~~~i~~~i~~ll~ 336 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG-----T-DPEAILAAIEKLLS 336 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC-----C-CHHHHHHHHHHHhc
Confidence 56888888 999999 7778999999999998643 22 333444 37776553 1 58999999999999
Q ss_pred CHHHHHHH
Q 012652 422 DQNFKARA 429 (459)
Q Consensus 422 ~~~~~~~a 429 (459)
++..+++.
T Consensus 337 ~~~~~~~~ 344 (363)
T cd03786 337 DEFAYSLM 344 (363)
T ss_pred CchhhhcC
Confidence 87554443
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.12 E-value=8.2e-08 Score=92.76 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=61.7
Q ss_pred cCCceeecccchhh---hhcCCCccceeecc---C-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCC
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE 403 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 403 (459)
.+++.+.+|+++.+ ++..+++ +|.-. | .+++.||+++|+|+|+.+. ......+.. +.|...+
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~--- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVD--- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeC---
Confidence 47888999999654 6888888 55432 2 4689999999999999753 334444433 6676664
Q ss_pred CCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 404 SGIITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
. +.+++.++|.++++|++.+++..+
T Consensus 330 -~--~~~~~~~~i~~l~~~~~~~~~~~~ 354 (375)
T cd03821 330 -D--DVDALAAALRRALELPQRLKAMGE 354 (375)
T ss_pred -C--ChHHHHHHHHHHHhCHHHHHHHHH
Confidence 2 349999999999999754444443
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.07 E-value=2.5e-07 Score=90.88 Aligned_cols=79 Identities=20% Similarity=0.178 Sum_probs=55.6
Q ss_pred cCCceeecccchh---hhhcCCCccceeec---cCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCC
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDE 403 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~H---gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~ 403 (459)
.+++.+.+|+|+. .+++.+|+ +|.- -|. .++.||+++|+|+|+.+..+ ....+.+ |-+...
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~---- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLA---- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceeec----
Confidence 4668889999865 48889998 6542 243 48999999999999986542 2333433 434323
Q ss_pred CCcccHHHHHHHHHHHhCCH
Q 012652 404 SGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 404 ~~~~~~~~l~~~i~~ll~~~ 423 (459)
.. +.+++.+++.+++++.
T Consensus 317 -~~-~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 317 -EP-DVESIVRKLEEAISIL 334 (398)
T ss_pred -CC-CHHHHHHHHHHHHhCh
Confidence 22 7899999999999864
No 70
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.03 E-value=1.7e-07 Score=90.39 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=62.2
Q ss_pred cCCceeecccchh---hhhcCCCccceee----------ccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeee
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLS----------HCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGL 397 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~----------HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~ 397 (459)
++|+.+.+++|+. .++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+ -..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhC-CCceE
Confidence 5789999999865 47888888 555 23357899999999999987542 23344554 24787
Q ss_pred eeecCCCCcccHHHHHHHHHHHhCCHHHH
Q 012652 398 KLDKDESGIITGEEISNKLVQVLGDQNFK 426 (459)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 426 (459)
.++ .-+.+++.++|.+++.|+..+
T Consensus 308 ~~~-----~~~~~~l~~~i~~~~~~~~~~ 331 (355)
T cd03799 308 LVP-----PGDPEALADAIERLLDDPELR 331 (355)
T ss_pred EeC-----CCCHHHHHHHHHHHHhCHHHH
Confidence 774 337999999999999988643
No 71
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.01 E-value=2.3e-07 Score=89.95 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=64.9
Q ss_pred cCCceeecccchhh---hhcCCCccceeec----------cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeee
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFLSH----------CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGL 397 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I~H----------gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~ 397 (459)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+ -+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeE
Confidence 56788889998754 6899888 6542 2357899999999999987553 35666666 37888
Q ss_pred eeecCCCCcccHHHHHHHHHHHhCCHHHHHH
Q 012652 398 KLDKDESGIITGEEISNKLVQVLGDQNFKAR 428 (459)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 428 (459)
.++ .-+.+++.++|.++++|++.+++
T Consensus 317 ~~~-----~~d~~~l~~~i~~l~~~~~~~~~ 342 (367)
T cd05844 317 LVP-----EGDVAALAAALGRLLADPDLRAR 342 (367)
T ss_pred EEC-----CCCHHHHHHHHHHHHcCHHHHHH
Confidence 774 34789999999999998864443
No 72
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.01 E-value=9.7e-08 Score=91.31 Aligned_cols=128 Identities=11% Similarity=0.018 Sum_probs=79.4
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHH---hcCCceeecccchh---hhhcCCC
Q 012652 277 IYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQER---VATRGQMIGWAPQQ---RVLSHPS 350 (459)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~nv~i~~~vpq~---~iL~~~~ 350 (459)
+.+..|... ..+-...+++++++.+.+++++..+. . .......... ..+++.+.+++++. .+++.++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~----~-~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS----D-PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC----C-HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 444557653 33345567777877777776655432 0 0000111111 25788899999985 4688888
Q ss_pred ccceee--ccC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 351 IACFLS--HCG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 351 ~~~~I~--HgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
+-++-+ +-| ..++.||+++|+|+|+... ......+.+ -..|...+ . .+++.+++.+++..+
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~-~~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVED-GVTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeC-CCcEEEeC----C---HHHHHHHHHHHhccH
Confidence 833323 234 3589999999999998844 344445544 13677663 2 999999999997543
No 73
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.00 E-value=8.6e-07 Score=88.18 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=71.0
Q ss_pred cCCceeecccchhh---hhcCC----Cccceeecc---C-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeee
Q 012652 331 ATRGQMIGWAPQQR---VLSHP----SIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKL 399 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~----~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~ 399 (459)
.++|.+.+++++.+ ++..+ |+ ||... | ..++.||+++|+|+|+... ......+.+ -..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~-~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIAN-CRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcC-CCcEEEe
Confidence 46777778888765 46655 55 77654 3 4589999999999998843 334444544 2467777
Q ss_pred ecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 400 DKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 400 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
+ .-++++|.++|.++++|++.+ +++++..++.+...-+-...++++.+
T Consensus 389 ~-----~~d~~~la~~i~~ll~~~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 389 D-----VLDLEAIASALEDALSDSSQW---QLWSRNGIEGVRRHYSWDAHVEKYLR 436 (439)
T ss_pred C-----CCCHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 347899999999999998644 33444444333323444444444443
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.00 E-value=3e-07 Score=88.83 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=71.2
Q ss_pred hcCCceee-cccchh---hhhcCCCccceee--c----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeee
Q 012652 330 VATRGQMI-GWAPQQ---RVLSHPSIACFLS--H----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKL 399 (459)
Q Consensus 330 ~~~nv~i~-~~vpq~---~iL~~~~~~~~I~--H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~ 399 (459)
..+++.+. .|+|+. .++..+++ +|. + |..+++.||+++|+|+|+.+..+ ...+.. -+.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEE
Confidence 34678777 458864 58889888 553 2 33568899999999999986543 333444 3777777
Q ss_pred ecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 400 DKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 400 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
+ .-+.+++.+++.++++|++.+++ +++..++.++. -+.....+++.+
T Consensus 317 ~-----~~d~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~-~s~~~~~~~~~~ 363 (366)
T cd03822 317 P-----PGDPAALAEAIRRLLADPELAQA---LRARAREYARA-MSWERVAERYLR 363 (366)
T ss_pred c-----CCCHHHHHHHHHHHHcChHHHHH---HHHHHHHHHhh-CCHHHHHHHHHH
Confidence 4 34689999999999998754433 33444433332 444444444444
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.98 E-value=6.7e-07 Score=86.49 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=85.1
Q ss_pred EEEeCCcccCCHHHHHHHHHHHhhCC--CCEEEEEcCCCCCCCCCCCChhHH--HHhcCCceeecccchhh---hhcCCC
Q 012652 278 YVAFGSHTVLDHNQFQELALGLEICN--RPFLWVVRPDITTDANDVYPRGFQ--ERVATRGQMIGWAPQQR---VLSHPS 350 (459)
Q Consensus 278 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~nv~i~~~vpq~~---iL~~~~ 350 (459)
++..|+.. +.+-+..++++++.+. .+++++..+. ....+...+. ....++|.+.+++++.+ ++..++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNAD----HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCC----CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 44568764 2334555666665554 4544443321 0111111111 12347898999999864 677777
Q ss_pred ccceeeccCc-----hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHH
Q 012652 351 IACFLSHCGW-----NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNF 425 (459)
Q Consensus 351 ~~~~I~HgG~-----~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 425 (459)
+ ++.++-. +++.||+++|+|+|+....+ +...+.. .|..... .+.+.++|.++++|++.
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~-------~~~l~~~i~~l~~~~~~ 333 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV-------GDDLASLLEELEADPEE 333 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC-------chHHHHHHHHHHhCHHH
Confidence 7 5554332 57899999999999875432 2222222 2333331 12299999999998754
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 426 KARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 426 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
+++ +++..++.+...-+-....+++++.
T Consensus 334 ~~~---~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 334 VSA---MAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 433 3343333332234555566666554
No 76
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.98 E-value=2.9e-07 Score=87.96 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=61.9
Q ss_pred cCCceeecccchh-hhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 331 ATRGQMIGWAPQQ-RVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~~~vpq~-~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.+++.+.++.+.. +++..+++ +|.- |..+++.||+++|+|+|+... ......+.+ -+.|...+
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~-~~~g~~~~----- 312 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILED-GENGLLVP----- 312 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcC-CCceEEEC-----
Confidence 4678888887753 68999888 6632 335789999999999998643 355666766 37788774
Q ss_pred cccHHHH---HHHHHHHhCCHHHHHHHHH
Q 012652 406 IITGEEI---SNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 406 ~~~~~~l---~~~i~~ll~~~~~~~~a~~ 431 (459)
.-+.+.+ .+++..++.+++.+++++.
T Consensus 313 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 313 VGDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred CCCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 3456666 6777777777754444444
No 77
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.97 E-value=9e-07 Score=86.76 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=51.5
Q ss_pred eecccchhhhhcCCCccceeeccC----chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHH
Q 012652 336 MIGWAPQQRVLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEE 411 (459)
Q Consensus 336 i~~~vpq~~iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~ 411 (459)
+.++.+..+++..+|+ ||.-+- .+++.||+++|+|+|+.-. +.+ ..+.+ -+-|...+ +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~----~~~-~~v~~-~~ng~~~~-------~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANH----PSN-EFFKQ-FPNCRTYD-------DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecC----CCc-ceeec-CCceEecC-------CHHH
Confidence 3466666679999988 887643 4688899999999999843 333 33433 24443332 5889
Q ss_pred HHHHHHHHhCCH
Q 012652 412 ISNKLVQVLGDQ 423 (459)
Q Consensus 412 l~~~i~~ll~~~ 423 (459)
+.+++.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999754
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.96 E-value=2.7e-06 Score=81.73 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCceeecccch-hhhhcCCCccceeeccC----chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCc
Q 012652 332 TRGQMIGWAPQ-QRVLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGI 406 (459)
Q Consensus 332 ~nv~i~~~vpq-~~iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 406 (459)
+++.+.+...+ .+++..+++ +|..+. .+++.||+++|+|+|+. |...+...+.+ .|..++ .
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~~---~g~~~~-----~ 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVGD---TGFLVP-----P 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhhc---CCEEeC-----C
Confidence 56666665443 469999988 776544 47999999999999986 34445555543 344453 2
Q ss_pred ccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 407 ITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 407 ~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
-+.+++.++|.++++|++.++ ++++..++.+.+.-+-.+..+.+.+
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 317 GDPEALAEAIEALLADPALRQ---ALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHH---HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 368999999999999874332 2333333333333455555555554
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.95 E-value=1.2e-06 Score=84.66 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=62.2
Q ss_pred cCCceeecccch-hhhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 331 ATRGQMIGWAPQ-QRVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~~~vpq-~~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.+++.+.++..+ .+++..+++ +|.- |-..++.||+++|+|+|+....+ ....+.. +.|....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~----- 314 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL----- 314 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-----
Confidence 467888887544 469999998 6643 34678999999999999875433 3334443 5555442
Q ss_pred cccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 406 IITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
.-+++++.++|.++++|++.+++...
T Consensus 315 ~~~~~~~a~~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 315 DESPEIWAEEILKLKSEDRRERSSES 340 (358)
T ss_pred CCCHHHHHHHHHHHHhCcchhhhhhh
Confidence 33589999999999999976655533
No 80
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.92 E-value=4.4e-07 Score=87.83 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=80.0
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHhhCC--CCEEEEEcCCCCCCCCCCCChhHHHH-----hcCCceeecccch--h--
Q 012652 275 SVIYVAFGSHTVLDHNQFQELALGLEICN--RPFLWVVRPDITTDANDVYPRGFQER-----VATRGQMIGWAPQ--Q-- 343 (459)
Q Consensus 275 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~nv~i~~~vpq--~-- 343 (459)
+.+++..|+......+.+..+++++.+.. .+++++..+. ..+.+.+. .+++|.+.+|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS--------DFEKCKAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc--------cHHHHHHHHHHcCCCCeEEEecccCCcHHHH
Confidence 35567777754323344566777775553 3444433222 11222221 3478889998854 2
Q ss_pred -hhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHH
Q 012652 344 -RVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQ 418 (459)
Q Consensus 344 -~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ 418 (459)
+.+..+++ +|.. |-..++.||+++|+|+|+.-. .......+.+ -..|..++ .-+.+++.++|.+
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~-~~~G~lv~-----~~d~~~la~~i~~ 320 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKP-GLNGELYT-----PGNIDEFVGKLNK 320 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccC-CCceEEEC-----CCCHHHHHHHHHH
Confidence 34556777 6643 335799999999999998741 2222234444 25677774 3489999999999
Q ss_pred HhCCHH
Q 012652 419 VLGDQN 424 (459)
Q Consensus 419 ll~~~~ 424 (459)
+++|++
T Consensus 321 l~~~~~ 326 (359)
T PRK09922 321 VISGEV 326 (359)
T ss_pred HHhCcc
Confidence 999986
No 81
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.91 E-value=2.3e-06 Score=82.53 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=78.7
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhHH---H--HhcCCceeecccch-hh
Q 012652 274 KSVIYVAFGSHTV-LDHNQFQELALGLEIC--NRPFLWVVRPDITTDANDVYPRGFQ---E--RVATRGQMIGWAPQ-QR 344 (459)
Q Consensus 274 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~---~--~~~~nv~i~~~vpq-~~ 344 (459)
+..+++..|+... ...+.+-.++..+.+. +.+++++-.+. ....+...+. + ...++|.+.++.+. ..
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ----GRRFYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc----ccchHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 4466777787642 2334444444445443 33444443322 1111111111 1 12467888888543 36
Q ss_pred hhcCCCccceeec----cC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 345 VLSHPSIACFLSH----CG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 345 iL~~~~~~~~I~H----gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
+|..+++ +|+- -| .+++.||+++|+|+|+.. -......+.+ -+.|..++ .-+.+++.++|..+
T Consensus 260 ~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~-~~~g~~~~-----~~~~~~l~~~i~~~ 327 (355)
T cd03819 260 AYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRP-GETGLLVP-----PGDAEALAQALDQI 327 (355)
T ss_pred HHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhC-CCceEEeC-----CCCHHHHHHHHHHH
Confidence 8999998 5532 23 368999999999999874 3334555555 25787774 34899999999755
Q ss_pred h-CCHHHH
Q 012652 420 L-GDQNFK 426 (459)
Q Consensus 420 l-~~~~~~ 426 (459)
+ .+++.+
T Consensus 328 ~~~~~~~~ 335 (355)
T cd03819 328 LSLLPEGR 335 (355)
T ss_pred HhhCHHHH
Confidence 5 455433
No 82
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.91 E-value=1.5e-06 Score=91.84 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=61.6
Q ss_pred cCCceeecccchhh---hhcCC----Cccceeec---cC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeee
Q 012652 331 ATRGQMIGWAPQQR---VLSHP----SIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKL 399 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~----~~~~~I~H---gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~ 399 (459)
.++|.+.+++++.+ ++..+ ++ ||.- =| ..++.||+++|+|+|+....+ ....+.. -.-|+.+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~-g~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRV-LDNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhcc-CCcEEEE
Confidence 46777888888764 56655 35 7764 23 358889999999999985432 2233333 2457777
Q ss_pred ecCCCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 400 DKDESGIITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 400 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
+ .-+.+.|+++|.+++.|++.+++..+
T Consensus 620 d-----P~D~eaLA~AL~~LL~Dpelr~~m~~ 646 (1050)
T TIGR02468 620 D-----PHDQQAIADALLKLVADKQLWAECRQ 646 (1050)
T ss_pred C-----CCCHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4 34789999999999999876555443
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=98.90 E-value=1.2e-06 Score=85.07 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=53.7
Q ss_pred CCceeec-ccchhh---hhcCCCccceee-c-----cC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeee
Q 012652 332 TRGQMIG-WAPQQR---VLSHPSIACFLS-H-----CG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLD 400 (459)
Q Consensus 332 ~nv~i~~-~vpq~~---iL~~~~~~~~I~-H-----gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~ 400 (459)
+|+.+.. |+|..+ +|+.+|+ +|. + -| .+++.||+++|+|+|+... ..+...+++ -+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccC-CCCeEEEC
Confidence 4566654 788765 5999998 663 1 12 3579999999999999743 335666666 36788773
Q ss_pred cCCCCcccHHHHHHHHHHHh
Q 012652 401 KDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll 420 (459)
+.+++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4789999998875
No 84
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.89 E-value=1.2e-06 Score=84.55 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=63.6
Q ss_pred hcCCceeecccchh---hhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecC
Q 012652 330 VATRGQMIGWAPQQ---RVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKD 402 (459)
Q Consensus 330 ~~~nv~i~~~vpq~---~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~ 402 (459)
..+++.+.+++|+. +++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~-- 319 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFD-- 319 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeC--
Confidence 45788899999876 47888888 5433 3346899999999999986442 22222322 344443
Q ss_pred CCCcccHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 012652 403 ESGIITGEEISNKLVQVLGDQNFKARALELKE 434 (459)
Q Consensus 403 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 434 (459)
.-+.+++.++|.+++.|++.+....+-+.
T Consensus 320 ---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 320 ---PLDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred ---CCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 23789999999999999887766655444
No 85
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.87 E-value=3.5e-06 Score=81.34 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=69.6
Q ss_pred cCCceeecccch-hhhhcCCCccceeeccC----chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 331 ATRGQMIGWAPQ-QRVLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~~~vpq-~~iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.+|+.+.++..+ .+++..+++ +|.-.. .+++.||+++|+|+|+. |...+...+++ .|.. +.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~--~~----- 309 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLI--VP----- 309 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceE--eC-----
Confidence 357888887765 478999998 655432 57899999999999975 55556666655 3444 32
Q ss_pred cccHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 406 IITGEEISNKLVQVL-GDQNFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
.-+.+++.+++.+++ .++.+++....-++.+.+ .-+-....+++.+
T Consensus 310 ~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~----~~s~~~~~~~~~~ 356 (360)
T cd04951 310 ISDPEALANKIDEILKMSGEERDIIGARRERIVK----KFSINSIVQQWLT 356 (360)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 247899999999998 455666555443333333 2344444444443
No 86
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.86 E-value=2.3e-06 Score=83.32 Aligned_cols=110 Identities=11% Similarity=0.046 Sum_probs=70.4
Q ss_pred CCceeecccch-hhhhcCCCcccee--ec--cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCc
Q 012652 332 TRGQMIGWAPQ-QRVLSHPSIACFL--SH--CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGI 406 (459)
Q Consensus 332 ~nv~i~~~vpq-~~iL~~~~~~~~I--~H--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 406 (459)
+++.+.++..+ .+++..+|+ +| ++ |-..++.||+++|+|+|+... ..+...+++ -..|..++ .
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~-~~~g~~~~-----~ 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQH-GVTGALVP-----P 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcC-CCceEEeC-----C
Confidence 45666665443 468999998 66 33 335789999999999999754 334555555 25677764 3
Q ss_pred ccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 407 ITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 407 ~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
-+.+++.++|.++++|++.++. +++..++.+...-+.....+++.+.
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~ 369 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRA---HGAAGRARAEQQFSINAMVAAYAGL 369 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4789999999999998764433 2333333222234555555555544
No 87
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.83 E-value=3.1e-06 Score=82.40 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=68.5
Q ss_pred cCCceeeccc--chh---hhhcCCCccceeecc---C-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeec
Q 012652 331 ATRGQMIGWA--PQQ---RVLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDK 401 (459)
Q Consensus 331 ~~nv~i~~~v--pq~---~iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~ 401 (459)
.+++.+..+. ++. +++..+++ |+.-+ | ..++.||+++|+|+|+.... .....+.. -+.|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~-~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIED-GETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhccc-CCceEEeC-
Confidence 4567777776 433 57888888 77543 2 35899999999999987533 23344544 25566553
Q ss_pred CCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 402 DESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
+.+.+.++|.+++.|++.++...+-+.. .+.+.-+-...++++++.+
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~---~~~~~~s~~~~~~~~~~~~ 369 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANARE---HVRENFLITRHLKDYLYLI 369 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHH
Confidence 3567888999999988765544333222 2222345555555555543
No 88
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.83 E-value=6.3e-06 Score=80.64 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=81.1
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHhhC--CCCEEEEEcCCCCCCCCCCCChhHHHH---h---cCCceee-cccchh--
Q 012652 275 SVIYVAFGSHTVLDHNQFQELALGLEIC--NRPFLWVVRPDITTDANDVYPRGFQER---V---ATRGQMI-GWAPQQ-- 343 (459)
Q Consensus 275 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~---~~nv~i~-~~vpq~-- 343 (459)
.++++..|... +.+-+..++++++.+ +.+++++.++.. ...+.+.+.+. . .+++... +++++.
T Consensus 201 ~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 201 RPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD----TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred ceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC----cHHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 35566678764 233455666666554 455555544321 01111112111 1 1234443 677754
Q ss_pred -hhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCccc----HHHHHH
Q 012652 344 -RVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIIT----GEEISN 414 (459)
Q Consensus 344 -~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~----~~~l~~ 414 (459)
.++..+|+ +|.- |...++.||+++|+|+|+... ......+++ -+.|..++. ...+ .+++.+
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~-~~~G~~~~~---~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVD-GETGFLVPP---DNSDADGFQAELAK 344 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhC-CCceEEcCC---CCCcccchHHHHHH
Confidence 47999998 6643 224577999999999998743 345555655 367887753 2211 289999
Q ss_pred HHHHHhCCHHHHHH
Q 012652 415 KLVQVLGDQNFKAR 428 (459)
Q Consensus 415 ~i~~ll~~~~~~~~ 428 (459)
+|.++++|++.+++
T Consensus 345 ~i~~l~~~~~~~~~ 358 (388)
T TIGR02149 345 AINILLADPELAKK 358 (388)
T ss_pred HHHHHHhCHHHHHH
Confidence 99999998764443
No 89
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.78 E-value=1.3e-06 Score=82.84 Aligned_cols=161 Identities=10% Similarity=0.002 Sum_probs=93.7
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhCCCC-EEEEEcCCCCCCCCCCCChhHHHHhcC--CceeecccchhhhhcCCC
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEICNRP-FLWVVRPDITTDANDVYPRGFQERVAT--RGQMIGWAPQQRVLSHPS 350 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~--nv~i~~~vpq~~iL~~~~ 350 (459)
.++|.+--||-..--...+..++++...+..+ .++++... ... +.+.+...+ .+.+.+ .-.+++..||
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------FKG-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------CcH-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 35888888886322223444444555433322 33333322 011 222222222 222232 2347899999
Q ss_pred ccceeeccCchhHHHhhhcCCceeccc-cccccchhhhhhh---ceeeeeeeeec--------C--CCCcccHHHHHHHH
Q 012652 351 IACFLSHCGWNSTMEGVSNGIPFLCWP-YFVDQFLNESYIC---DIWKVGLKLDK--------D--ESGIITGEEISNKL 416 (459)
Q Consensus 351 ~~~~I~HgG~~s~~eal~~gvP~v~~P-~~~DQ~~na~rv~---~~~G~G~~~~~--------~--~~~~~~~~~l~~~i 416 (459)
+ +|+-+|..|+ |+..+|+|+|+.= ...-|+.||+++. . .|+.-.+-- . -.++.|++.|.+++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 8 9999999999 9999999998822 3457899999998 4 466554410 0 03668899999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 012652 417 VQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNF 453 (459)
Q Consensus 417 ~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 453 (459)
.+. .+++.++..+.+++... ++++.+..+.+
T Consensus 314 ~~~-----~~~~~~~~~~~l~~~l~-~~a~~~~A~~i 344 (347)
T PRK14089 314 KEM-----DREKFFKKSKELREYLK-HGSAKNVAKIL 344 (347)
T ss_pred HHH-----HHHHHHHHHHHHHHHhc-CCHHHHHHHHH
Confidence 882 34455555555555443 25555554443
No 90
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.77 E-value=3.8e-05 Score=79.69 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=56.5
Q ss_pred cCCceeeccc-ch---hhhhcC----CCccceeecc---C-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeee
Q 012652 331 ATRGQMIGWA-PQ---QRVLSH----PSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLK 398 (459)
Q Consensus 331 ~~nv~i~~~v-pq---~~iL~~----~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~ 398 (459)
.++|.+.++. +. .+++.+ +++ ||.-. | ..++.||+++|+|+|+.-. -.....|.+ -.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~d-g~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQD-GVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcC-CCcEEE
Confidence 3677777764 32 235542 234 77532 2 3588999999999999743 345555655 256887
Q ss_pred eecCCCCcccHHHHHHHHHHHh----CCHHHHHHHH
Q 012652 399 LDKDESGIITGEEISNKLVQVL----GDQNFKARAL 430 (459)
Q Consensus 399 ~~~~~~~~~~~~~l~~~i~~ll----~~~~~~~~a~ 430 (459)
++ .-+++++.++|.+++ .|++.+++..
T Consensus 691 Vd-----p~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 691 ID-----PYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred eC-----CCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 75 346888999988875 5776555433
No 91
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.76 E-value=2.3e-06 Score=82.64 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=81.1
Q ss_pred CeEEEEEeCCc---ccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHh--cCCceeecccch---hhh
Q 012652 274 KSVIYVAFGSH---TVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERV--ATRGQMIGWAPQ---QRV 345 (459)
Q Consensus 274 ~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~nv~i~~~vpq---~~i 345 (459)
++.|++++=.. ..+..+.+..+++++...+.+++++...... ....+.+.+.+.. .+|+.+.+-++. ..+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p--~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA--GSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC--CchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 45888888433 2344678999999998777666666533200 0001111222212 367888866554 468
Q ss_pred hcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHH
Q 012652 346 LSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNF 425 (459)
Q Consensus 346 L~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 425 (459)
+.+|++ +|+.++.+- .||.+.|||+|.+- + -....+ .|..+.+ -..++++|.+++.+++ ++++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~----R~e~~~-~g~nvl~-----vg~~~~~I~~a~~~~~-~~~~ 341 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T----RQKGRL-RADSVID-----VDPDKEEIVKAIEKLL-DPAF 341 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C----Cchhhh-hcCeEEE-----eCCCHHHHHHHHHHHh-ChHH
Confidence 999888 998875555 89999999999773 2 111112 2433331 1346899999999965 4443
No 92
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=2e-05 Score=74.33 Aligned_cols=308 Identities=12% Similarity=0.096 Sum_probs=182.2
Q ss_pred CCccCHHHHHHHHHHHHhC--CCEEEEEe-CCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHh
Q 012652 12 PAQGHVIPLLEFSQCLAKH--GFRVTFVN-SEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQV 88 (459)
Q Consensus 12 ~~~gH~~p~~~La~~L~~r--Gh~Vt~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (459)
.+.|-++-..+|.++|.++ ++.|++-+ ++-..+.+.+... ..+...-+|-+
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~------~~v~h~YlP~D-------------------- 110 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG------DSVIHQYLPLD-------------------- 110 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC------CCeEEEecCcC--------------------
Confidence 4669999999999999998 88988888 4455555554421 12333333311
Q ss_pred ccHHHHHHHHHHhCCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCCCcccc
Q 012652 89 MPGKLEELIEEINGRDDEKIDCFISDGFM--GWSMEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGTPIRK 166 (459)
Q Consensus 89 ~~~~~~~l~~~l~~~~~~~pDlvi~D~~~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (459)
....++.+++. ++||++|.--.. +....-++..|+|.+.++.--+-
T Consensus 111 ~~~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~-------------------------- 158 (419)
T COG1519 111 LPIAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSD-------------------------- 158 (419)
T ss_pred chHHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeech--------------------------
Confidence 12345667777 899998755443 35667778899999986531110
Q ss_pred ccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHh-hccCCEEEEcCCccCchhhhccCCccccccccc
Q 012652 167 QMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKA-MKVADFQFCNSTYELEPGAFNMIPELLPVGPLL 245 (459)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~p~v~~vGp~~ 245 (459)
.+ -..+....+..+. +.+-+++++.+..+-+.-..-.-+++...|-+-
T Consensus 159 ----------------rS---------------~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlK 207 (419)
T COG1519 159 ----------------RS---------------FARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLK 207 (419)
T ss_pred ----------------hh---------------hHHHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcceEEeccee
Confidence 00 0001111112222 355678888886554433111234577777765
Q ss_pred cCCCCCCCCCCCCCCCc-hHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCC--CCEEEEEcCCCCCCCCCCC
Q 012652 246 ASNRLGNSAGHFWPEDS-TCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICN--RPFLWVVRPDITTDANDVY 322 (459)
Q Consensus 246 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~ 322 (459)
...... +.+. ....|-..-++.-.+.+..+|+. .+.+.+-....++.+.. ..+||+-. .
T Consensus 208 fd~~~~-------~~~~~~~~~~r~~l~~~r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPR-H--------- 269 (419)
T COG1519 208 FDIEPP-------PQLAAELAALRRQLGGHRPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPR-H--------- 269 (419)
T ss_pred ecCCCC-------hhhHHHHHHHHHhcCCCCceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecC-C---------
Confidence 554321 2222 22222222122124556566643 35555666666664433 34555533 2
Q ss_pred ChhHHH---H------------------hcCCceeecccch-hhhhcCCCc----cceeeccCchhHHHhhhcCCceecc
Q 012652 323 PRGFQE---R------------------VATRGQMIGWAPQ-QRVLSHPSI----ACFLSHCGWNSTMEGVSNGIPFLCW 376 (459)
Q Consensus 323 ~~~~~~---~------------------~~~nv~i~~~vpq-~~iL~~~~~----~~~I~HgG~~s~~eal~~gvP~v~~ 376 (459)
|+.|.+ . ...+|.+.+-+-- ..++.-+++ +-++-+||+| ..|++++|+|+|.=
T Consensus 270 pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~G 348 (419)
T COG1519 270 PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFG 348 (419)
T ss_pred hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeC
Confidence 122111 0 1135555555543 345666665 3356699998 56999999999999
Q ss_pred ccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 012652 377 PYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEI 435 (459)
Q Consensus 377 P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 435 (459)
|...-|.+-++++.++ |.|+.++ +.+.|.+++..++.|++.+++..+=...
T Consensus 349 p~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~ 399 (419)
T COG1519 349 PYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLE 399 (419)
T ss_pred CccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999995 9999995 2888999999999887655555333333
No 93
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.74 E-value=1.4e-05 Score=78.66 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=75.1
Q ss_pred cCCceeecccchhh---hhcCCCccceeec---------cCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeee
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFLSH---------CGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGL 397 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I~H---------gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~ 397 (459)
.++|.+.+|+|+.+ ++..+|+ ||.- -|. ++++||+++|+|+|+.... .....+++ -..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~-~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEA-DKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcC-CCceE
Confidence 46788999999864 7889998 6642 244 5789999999999997433 34444554 24677
Q ss_pred eeecCCCCcccHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 398 KLDKDESGIITGEEISNKLVQVLG-DQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
.++ .-+.+++.++|.++++ |++.++ ++++..++.+...-+.....+++.+-+
T Consensus 351 lv~-----~~d~~~la~ai~~l~~~d~~~~~---~~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 351 LVP-----ENDAQALAQRLAAFSQLDTDELA---PVVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred EeC-----CCCHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 764 3479999999999998 876433 333344433333455556666655543
No 94
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.74 E-value=8.5e-07 Score=85.56 Aligned_cols=135 Identities=8% Similarity=0.094 Sum_probs=90.1
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchh---hhhcCCCccc
Q 012652 277 IYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQ---RVLSHPSIAC 353 (459)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~---~iL~~~~~~~ 353 (459)
.++..|+.. ..+-++.++++++.++.+++++..+. ..+.+.+...+||.+.+++|+. +++..+++-+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEE
Confidence 345567654 33456777888887787776665432 1123333567899999999985 4788999833
Q ss_pred eeeccCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH-HHHHHHHH
Q 012652 354 FLSHCGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ-NFKARALE 431 (459)
Q Consensus 354 ~I~HgG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~ 431 (459)
+-+.-|. .++.||+++|+|+|+.... .....+.+ -+.|..++ .-+.+++.++|.++++|+ ..++++++
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~-~~~G~~~~-----~~~~~~la~~i~~l~~~~~~~~~~~~~ 336 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVID-GVTGILFE-----EQTVESLAAAVERFEKNEDFDPQAIRA 336 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeC-CCCEEEeC-----CCCHHHHHHHHHHHHhCcccCHHHHHH
Confidence 2234343 4578999999999998543 34445555 26788774 347889999999999987 44444433
No 95
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.70 E-value=6.8e-06 Score=81.88 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=112.5
Q ss_pred CCEEEEcCCccCchhhhccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHH
Q 012652 216 ADFQFCNSTYELEPGAFNMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQEL 295 (459)
Q Consensus 216 ~~~~l~~~~~~l~~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 295 (459)
.|.+++--.+|-++. ....-++.|||--..+.... .+..++..+.+.-.+++++|-+--||-..-=...+..+
T Consensus 362 vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~ 434 (608)
T PRK01021 362 LDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISS------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQ 434 (608)
T ss_pred hhhheecCccCHHHH-HhcCCCeEEECCcHHhhccc------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 355666666666665 45666899999444333211 12223333334333456789898898422112234556
Q ss_pred HHHHh--hCC--CCEEEEEcCCCCCCCCCCCChhHHHHhc-CC---ceeecccchhhhhcCCCccceeeccCchhHHHhh
Q 012652 296 ALGLE--ICN--RPFLWVVRPDITTDANDVYPRGFQERVA-TR---GQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGV 367 (459)
Q Consensus 296 ~~a~~--~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~n---v~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal 367 (459)
+++.+ .+. .++++..... ...+.+.+... .+ +.+..--...+++..||+ .+.-+|. .+.|+.
T Consensus 435 l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaA 504 (608)
T PRK01021 435 VQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETA 504 (608)
T ss_pred HHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHH
Confidence 66665 432 3444432211 11122222221 11 222210012579999998 7777665 457999
Q ss_pred hcCCceeccc-cccccchhhhhhhc----e-------eeeeeeeecCC-CCcccHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 012652 368 SNGIPFLCWP-YFVDQFLNESYICD----I-------WKVGLKLDKDE-SGIITGEEISNKLVQVLGDQNFKARALELKE 434 (459)
Q Consensus 368 ~~gvP~v~~P-~~~DQ~~na~rv~~----~-------~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 434 (459)
..|+|||++= ...=-+.-|+++.+ + .|=.+..+.-. .++.|++.|.+++ ++|.|++++++.++=-+
T Consensus 505 L~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~ 583 (608)
T PRK01021 505 LNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACR 583 (608)
T ss_pred HhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 9999998852 21112223344332 0 01111111100 1467899999997 88888876666655555
Q ss_pred HHHhhhhcCCChHHHH
Q 012652 435 ITMSSVREGGSSYKTF 450 (459)
Q Consensus 435 ~~~~~~~~~g~~~~~~ 450 (459)
++++.+.+|.+.-+.+
T Consensus 584 ~lr~~Lg~~~~~~~~~ 599 (608)
T PRK01021 584 DLYQAMNESASTMKEC 599 (608)
T ss_pred HHHHHhcCCCCCHHHH
Confidence 5555554444443333
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.59 E-value=5.6e-05 Score=74.64 Aligned_cols=81 Identities=19% Similarity=0.103 Sum_probs=55.7
Q ss_pred cCCceeecccchh---hhhcCCCccceeecc---C-chhHHHhhhcCCceeccccccccchhhhhhh---ceeeeeeeee
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFVDQFLNESYIC---DIWKVGLKLD 400 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~---~~~G~G~~~~ 400 (459)
.++|.+.+++|+. .+|..+++ +|+-. | .-++.||+++|+|+|+.-..+. ....++ . -+.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~-g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDG-GPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCC-CCceEEe-
Confidence 4788899999876 48888888 55421 2 2478899999999998743221 111222 2 2466654
Q ss_pred cCCCCcccHHHHHHHHHHHhCCHH
Q 012652 401 KDESGIITGEEISNKLVQVLGDQN 424 (459)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll~~~~ 424 (459)
. +++++.++|.++++++.
T Consensus 377 ----~--d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCCH
Confidence 2 78999999999998653
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.55 E-value=1.8e-05 Score=77.71 Aligned_cols=108 Identities=11% Similarity=0.109 Sum_probs=70.5
Q ss_pred cCCceeecccchh-hhhcCCCcccee--ec--cCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCC
Q 012652 331 ATRGQMIGWAPQQ-RVLSHPSIACFL--SH--CGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDES 404 (459)
Q Consensus 331 ~~nv~i~~~vpq~-~iL~~~~~~~~I--~H--gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 404 (459)
.++|.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. ... -|.|..+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv----- 345 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLV----- 345 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEe-----
Confidence 4678888999864 58999998 65 32 354 46999999999999987533221 122 2667666
Q ss_pred CcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 405 GIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
. -+.+++.++|.++++|++.+++ |++..++.+...-+-.+.++.+.+
T Consensus 346 ~-~~~~~la~ai~~ll~~~~~~~~---~~~~ar~~v~~~fsw~~~~~~~~~ 392 (397)
T TIGR03087 346 A-ADPADFAAAILALLANPAEREE---LGQAARRRVLQHYHWPRNLARLDA 392 (397)
T ss_pred C-CCHHHHHHHHHHHHcCHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 3789999999999999865443 333333332223444455555444
No 98
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.53 E-value=1.6e-05 Score=75.80 Aligned_cols=214 Identities=15% Similarity=0.102 Sum_probs=115.3
Q ss_pred CCEEEEcCCccCchhhhccCCccccccccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHHH
Q 012652 216 ADFQFCNSTYELEPGAFNMIPELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQEL 295 (459)
Q Consensus 216 ~~~~l~~~~~~l~~~~~~~~p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 295 (459)
.|.+++--.+|-++. ....-++.|||--..+.... ...+....+.+ -.+++++|.+--||-..-=...+..+
T Consensus 134 ~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~~------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~ 205 (373)
T PF02684_consen 134 VDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVKP------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIF 205 (373)
T ss_pred HhheeECCcccHHHH-hccCCCeEEECCcchhhhcc------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 455666666666665 45556799999444433221 11222323333 23457789998998421111223334
Q ss_pred HHHHh---hC--CCCEEEEEcCCCCCCCCCCCChh-HH---HHhcCCceeeccc-chhhhhcCCCccceeeccCchhHHH
Q 012652 296 ALGLE---IC--NRPFLWVVRPDITTDANDVYPRG-FQ---ERVATRGQMIGWA-PQQRVLSHPSIACFLSHCGWNSTME 365 (459)
Q Consensus 296 ~~a~~---~~--~~~~i~~~~~~~~~~~~~~~~~~-~~---~~~~~nv~i~~~v-pq~~iL~~~~~~~~I~HgG~~s~~e 365 (459)
+++.+ +. +.++++..... ..+. +. .....++.+.-.. .-.+++..+++ .+.-+| +.+.|
T Consensus 206 l~aa~~l~~~~p~l~fvvp~a~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE 274 (373)
T PF02684_consen 206 LEAAKLLKKQRPDLQFVVPVAPE--------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLE 274 (373)
T ss_pred HHHHHHHHHhCCCeEEEEecCCH--------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHH
Confidence 55542 22 23444443221 1111 11 1122333333222 34468889888 555555 45679
Q ss_pred hhhcCCceeccc-cccccchhhhhhhceeeeeeeeec------CC--CCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 012652 366 GVSNGIPFLCWP-YFVDQFLNESYICDIWKVGLKLDK------DE--SGIITGEEISNKLVQVLGDQNFKARALELKEIT 436 (459)
Q Consensus 366 al~~gvP~v~~P-~~~DQ~~na~rv~~~~G~G~~~~~------~~--~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 436 (459)
+...|+|+|++= ...=.+.-|+++.+.-=+|+.--. .| .+..|++.|.+++.++|.|++.++......+.+
T Consensus 275 ~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~ 354 (373)
T PF02684_consen 275 AALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREI 354 (373)
T ss_pred HHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999998763 222223344444321011110000 01 367899999999999999998777777777777
Q ss_pred HhhhhcCCChHH
Q 012652 437 MSSVREGGSSYK 448 (459)
Q Consensus 437 ~~~~~~~g~~~~ 448 (459)
++..+.+.++..
T Consensus 355 ~~~~~~~~~~~~ 366 (373)
T PF02684_consen 355 RQLLGPGASSRA 366 (373)
T ss_pred HHhhhhccCCHH
Confidence 776665655543
No 99
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=5.7e-05 Score=70.77 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=94.8
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHH----hhCCCCEEEEEcCCCCCCCCCCCChhHH-HHhc--CCceee---cccchh
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGL----EICNRPFLWVVRPDITTDANDVYPRGFQ-ERVA--TRGQMI---GWAPQQ 343 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~--~nv~i~---~~vpq~ 343 (459)
+..+.+|+=.-.... +-+..+++++ +.. ..+.+++.-... ..+ ..+. +... +|+.+. ++.+..
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~----~~v-~e~~~~~L~~~~~v~li~pl~~~~f~ 276 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPR----PRV-RELVLKRLKNVERVKLIDPLGYLDFH 276 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCC----hhh-hHHHHHHhCCCCcEEEeCCcchHHHH
Confidence 448888864433333 3345555544 333 233444433210 011 1111 2222 457776 566777
Q ss_pred hhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 344 RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 344 ~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
.++.+|-+ ++|-+|. -.-||-..|+|++++=...|++. +++ + |.-+.+. .+.+.|.+++.++++++
T Consensus 277 ~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~-a-gt~~lvg------~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 277 NLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVE-A-GTNILVG------TDEENILDAATELLEDE 342 (383)
T ss_pred HHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---cee-c-CceEEeC------ccHHHHHHHHHHHhhCh
Confidence 89999877 8988763 45699999999999988889887 333 2 6665553 46899999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 424 NFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 424 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
+..++......-. .+|.+|.+-++.+..
T Consensus 343 ~~~~~m~~~~npY----gdg~as~rIv~~l~~ 370 (383)
T COG0381 343 EFYERMSNAKNPY----GDGNASERIVEILLN 370 (383)
T ss_pred HHHHHHhcccCCC----cCcchHHHHHHHHHH
Confidence 7776554432222 234455554444443
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.50 E-value=8.2e-07 Score=84.78 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=79.5
Q ss_pred CCCeEEEEEeCCcccCC-H---HHHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhHHHHhc--CCceeecccchh-
Q 012652 272 QPKSVIYVAFGSHTVLD-H---NQFQELALGLEIC-NRPFLWVVRPDITTDANDVYPRGFQERVA--TRGQMIGWAPQQ- 343 (459)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~nv~i~~~vpq~- 343 (459)
.+++.++|++=..+... + ..+..+++++.+. +.++||.+.... .....+.+... +|+++.+-+++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p------~~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP------RGSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H------HHHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc------hHHHHHHHHhcccCCEEEECCCCHHH
Confidence 55789999984444334 3 3566666777555 677888886430 01112222221 588888766654
Q ss_pred --hhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhC
Q 012652 344 --RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLG 421 (459)
Q Consensus 344 --~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 421 (459)
.+|.++++ +|+.+| |-.-||.+.|+|+|.+=..++.+. -+ . .|..+.+ . .++++|.+++.+++.
T Consensus 252 ~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe---~r-~-~~~nvlv-----~-~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQE---GR-E-RGSNVLV-----G-TDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HH---HH-H-TTSEEEE-----T-SSHHHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHH---HH-h-hcceEEe-----C-CCHHHHHHHHHHHHh
Confidence 68999888 999999 444499999999999922222221 11 2 2555544 2 579999999999998
Q ss_pred CHHHHHHHH
Q 012652 422 DQNFKARAL 430 (459)
Q Consensus 422 ~~~~~~~a~ 430 (459)
+....++.+
T Consensus 318 ~~~~~~~~~ 326 (346)
T PF02350_consen 318 DKDFYRKLK 326 (346)
T ss_dssp -HHHHHHHH
T ss_pred ChHHHHhhc
Confidence 744444443
No 101
>PLN00142 sucrose synthase
Probab=98.48 E-value=0.00013 Score=75.92 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=54.2
Q ss_pred CCceeecc----cchhhhhc----CCCccceeec---cCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeee
Q 012652 332 TRGQMIGW----APQQRVLS----HPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKL 399 (459)
Q Consensus 332 ~nv~i~~~----vpq~~iL~----~~~~~~~I~H---gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~ 399 (459)
++|.+.+. ++..++.. .+++ ||.- -|. .++.||+++|+|+|+... ......|++ -.-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~d-G~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVD-GVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcC-CCcEEEe
Confidence 55655443 33344443 3455 6653 344 488999999999998743 345555555 2458777
Q ss_pred ecCCCCcccHHHHHHHHHH----HhCCHHHHHHHHH
Q 012652 400 DKDESGIITGEEISNKLVQ----VLGDQNFKARALE 431 (459)
Q Consensus 400 ~~~~~~~~~~~~l~~~i~~----ll~~~~~~~~a~~ 431 (459)
++ -+.+++.++|.+ ++.|++.+++..+
T Consensus 715 ~P-----~D~eaLA~aI~~lLekLl~Dp~lr~~mg~ 745 (815)
T PLN00142 715 DP-----YHGDEAANKIADFFEKCKEDPSYWNKISD 745 (815)
T ss_pred CC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 53 467777777765 4578766655443
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.48 E-value=2.7e-05 Score=78.05 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=74.3
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhh---CCCCEEEEEcCCCCCCCCCCCChhH---HHHhcCCcee-ecccchh--h
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEI---CNRPFLWVVRPDITTDANDVYPRGF---QERVATRGQM-IGWAPQQ--R 344 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~nv~i-~~~vpq~--~ 344 (459)
+.++++..|... +.+-++.+++++.+ .+.+++++-.+. ..+.+.+ .++.+.++.+ .++-.+. .
T Consensus 281 ~~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CCcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 345666778764 22334444444432 356666664322 0111122 2234455554 3663332 5
Q ss_pred hhcCCCccceeec---cCc-hhHHHhhhcCCceecccccc--ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHH
Q 012652 345 VLSHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFV--DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQ 418 (459)
Q Consensus 345 iL~~~~~~~~I~H---gG~-~s~~eal~~gvP~v~~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ 418 (459)
++..+|+ +|.- -|. .+.+||+++|+|.|+....+ |.-.+...-.+ -+.|..++ .-++++|.++|.+
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~-----~~d~~~la~~i~~ 424 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFD-----DFNAEDLLRALRR 424 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeC-----CCCHHHHHHHHHH
Confidence 7899998 6643 344 47889999999999875432 32212111122 26788774 4478999999999
Q ss_pred HhC
Q 012652 419 VLG 421 (459)
Q Consensus 419 ll~ 421 (459)
++.
T Consensus 425 ~l~ 427 (466)
T PRK00654 425 ALE 427 (466)
T ss_pred HHH
Confidence 886
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=0.00058 Score=70.87 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=69.2
Q ss_pred cCCceeecccchh-hhhcCCCccceee---ccC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 331 ATRGQMIGWAPQQ-RVLSHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~~~vpq~-~iL~~~~~~~~I~---HgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.++|.+.+|.++. .+|..+++ ||. +.| .+++.||+++|+|+|+... ......+.+ -..|..++. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~d-g~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQE-GVTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccC-CCCEEEeCC---C
Confidence 4778888988753 68999998 664 455 4788999999999999854 234455655 246888764 4
Q ss_pred cccHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 406 IITGEEISNKLVQVL----GDQNFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll----~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
+.+.+++.+++.+++ .++.+++++++..+ + .-+....++++++
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~---~----~FS~~~~~~~~~~ 689 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWAS---A----RFSLNQMIASTVR 689 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHHH---H----hCCHHHHHHHHHH
Confidence 555566666666555 45566665544331 1 2344455555544
No 104
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.40 E-value=0.00058 Score=68.74 Aligned_cols=160 Identities=12% Similarity=0.060 Sum_probs=86.6
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHH---hhCCCCEEEEEcCCCCCCCCCCCChhH---HHHhcCCceeecccchh---hh
Q 012652 275 SVIYVAFGSHTVLDHNQFQELALGL---EICNRPFLWVVRPDITTDANDVYPRGF---QERVATRGQMIGWAPQQ---RV 345 (459)
Q Consensus 275 ~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~nv~i~~~vpq~---~i 345 (459)
.++++..|+... .+-++.+++++ .+.+.+++++-.+. ..+.+.+ .++.+.++.+....+.. .+
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGD------PELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCC------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 356666777642 22334444444 33345655554321 1111222 22345667666555543 48
Q ss_pred hcCCCccceeecc---Cc-hhHHHhhhcCCceecccccc--ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 346 LSHPSIACFLSHC---GW-NSTMEGVSNGIPFLCWPYFV--DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 346 L~~~~~~~~I~Hg---G~-~s~~eal~~gvP~v~~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
+..+|+ ++.-. |. .+.+||+++|+|+|+....+ |.-.+...-.. -+.|..++ .-++++|.++|.++
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~-~~~G~l~~-----~~d~~~la~~i~~~ 434 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAE-SGTGFLFE-----EYDPGALLAALSRA 434 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCC-CCceEEeC-----CCCHHHHHHHHHHH
Confidence 889888 66432 33 37889999999999875432 22211111012 26788774 45789999999999
Q ss_pred hC----CHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 420 LG----DQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 420 l~----~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
+. +++.+++ +++... ...-+-.+..+++++-
T Consensus 435 l~~~~~~~~~~~~---~~~~~~---~~~fsw~~~a~~~~~~ 469 (473)
T TIGR02095 435 LRLYRQDPSLWEA---LQKNAM---SQDFSWDKSAKQYVEL 469 (473)
T ss_pred HHHHhcCHHHHHH---HHHHHh---ccCCCcHHHHHHHHHH
Confidence 87 5543333 333322 1234555555555544
No 105
>PLN02949 transferase, transferring glycosyl groups
Probab=98.37 E-value=0.001 Score=66.24 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=52.6
Q ss_pred cCCceeecccchhh---hhcCCCccceee---ccCch-hHHHhhhcCCceeccccccccchhhhhhhce-ee-eeeeeec
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFLS---HCGWN-STMEGVSNGIPFLCWPYFVDQFLNESYICDI-WK-VGLKLDK 401 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I~---HgG~~-s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~-~G-~G~~~~~ 401 (459)
.++|.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.+. .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 57888999998664 7888887 663 23333 789999999999998543200 0111110 01 23322
Q ss_pred CCCCcccHHHHHHHHHHHhCC
Q 012652 402 DESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~ 422 (459)
. +.++++++|.+++++
T Consensus 407 ---~--~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 ---T--TVEEYADAILEVLRM 422 (463)
T ss_pred ---C--CHHHHHHHHHHHHhC
Confidence 2 789999999999984
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.35 E-value=0.00033 Score=70.64 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=85.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHH---hhCCCCEEEEEcCCCCCCCCCCCChhHH---HHhcCCceeecccchh---h
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGL---EICNRPFLWVVRPDITTDANDVYPRGFQ---ERVATRGQMIGWAPQQ---R 344 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~nv~i~~~vpq~---~ 344 (459)
+..+++..|... ..+-+..+++++ .+.+.+++++..+. ..+.+.+. ++.++|+.+..-.++. .
T Consensus 295 ~~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 295 DAPLFGFVGRLT--EQKGIDLLLEALPELLELGGQLVILGSGD------PEYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CCCEEEEEeecc--ccccHHHHHHHHHHHHHcCcEEEEEecCC------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 345666677764 222333444444 33345555554332 11111222 2234677765333333 4
Q ss_pred hhcCCCccceeecc---C-chhHHHhhhcCCceecccccc--ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHH
Q 012652 345 VLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFV--DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQ 418 (459)
Q Consensus 345 iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ 418 (459)
++..+|+ ++.-. | ..+.+||+++|+|+|+....+ |.-.+...-.+ -|.|..++ .-+.++|.+++.+
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~-----~~~~~~l~~~i~~ 438 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFE-----GYNADALLAALRR 438 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeC-----CCCHHHHHHHHHH
Confidence 7888888 66431 2 247789999999999875432 22222111112 25788884 3468999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 419 VLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 419 ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
++....-++...++++...+ ..-+-.+..+++++.
T Consensus 439 ~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~ 473 (476)
T cd03791 439 ALALYRDPEAWRKLQRNAMA---QDFSWDRSAKEYLEL 473 (476)
T ss_pred HHHHHcCHHHHHHHHHHHhc---cCCChHHHHHHHHHH
Confidence 88532113333344443332 233444555555544
No 107
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.31 E-value=2e-06 Score=68.34 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=80.1
Q ss_pred eEEEEEeCCcccCCHH----HHHHHHHHHhhCCC-CEEEEEcCCCCCCCCCCCChhHHHH-hcCCcee--ecccch-hhh
Q 012652 275 SVIYVAFGSHTVLDHN----QFQELALGLEICNR-PFLWVVRPDITTDANDVYPRGFQER-VATRGQM--IGWAPQ-QRV 345 (459)
Q Consensus 275 ~~v~vs~Gs~~~~~~~----~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~-~~~nv~i--~~~vpq-~~i 345 (459)
-.+|||-||... +.- .-.+..+.+.+.|. +.|+.++.+. ...++..... ......+ .+|-|- .+.
T Consensus 4 ~~vFVTVGtT~F-d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----~~~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 4 MTVFVTVGTTSF-DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----PFFGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred eEEEEEeccccH-HHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----cCCCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 379999998642 211 12335566666775 5777777651 1122221111 1223333 477886 567
Q ss_pred hcCCCccceeeccCchhHHHhhhcCCceecccc----ccccchhhhhhhceeeeeeeeec
Q 012652 346 LSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPY----FVDQFLNESYICDIWKVGLKLDK 401 (459)
Q Consensus 346 L~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~----~~DQ~~na~rv~~~~G~G~~~~~ 401 (459)
.+.+++ +|+|+|.||++|.+..|+|.|+++- ...|-.-|..+.+ .|-=....+
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 777898 9999999999999999999999994 4789999999998 587776653
No 108
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.27 E-value=0.00015 Score=73.39 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=52.4
Q ss_pred ceeecccchh-hhhcCCCccceeecc---C-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCccc
Q 012652 334 GQMIGWAPQQ-RVLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIIT 408 (459)
Q Consensus 334 v~i~~~vpq~-~iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~ 408 (459)
+.+.++.++. +++..+|+ ||.-+ | ..++.||+++|+|+|+....+. .. +.+ |.+..+. -+
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~----e~-V~~--g~nGll~------~D 667 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSN----EF-FRS--FPNCLTY------KT 667 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCC----ce-Eee--cCCeEec------CC
Confidence 5555666654 58999998 77633 2 4688899999999999865442 21 222 3333331 26
Q ss_pred HHHHHHHHHHHhCCHH
Q 012652 409 GEEISNKLVQVLGDQN 424 (459)
Q Consensus 409 ~~~l~~~i~~ll~~~~ 424 (459)
.+++.++|.++|.++.
T Consensus 668 ~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 668 SEDFVAKVKEALANEP 683 (794)
T ss_pred HHHHHHHHHHHHhCch
Confidence 8999999999998875
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.22 E-value=0.00054 Score=66.64 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=53.0
Q ss_pred cCCceeecccchhh---hhcCCCcccee------eccCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeee
Q 012652 331 ATRGQMIGWAPQQR---VLSHPSIACFL------SHCGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLD 400 (459)
Q Consensus 331 ~~nv~i~~~vpq~~---iL~~~~~~~~I------~HgG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~ 400 (459)
.+||.+.+++|+.+ ++.++|+.++- +.++. +.+.|++++|+|+|..++ ...++. .+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 37899999998764 78888883321 22332 468999999999998753 122222 23 33332
Q ss_pred cCCCCcccHHHHHHHHHHHhCCH
Q 012652 401 KDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 401 ~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
. -+.+++.++|.+++.++
T Consensus 324 ----~-~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 ----A-DDPEEFVAAIEKALLED 341 (373)
T ss_pred ----C-CCHHHHHHHHHHHHhcC
Confidence 2 27999999999976544
No 110
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.18 E-value=0.00032 Score=70.62 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=62.8
Q ss_pred cCCceeecccchhhhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhce----ee-eeeeeec
Q 012652 331 ATRGQMIGWAPQQRVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDI----WK-VGLKLDK 401 (459)
Q Consensus 331 ~~nv~i~~~vpq~~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~----~G-~G~~~~~ 401 (459)
.+||.+.+...-.+++..+++ +|.- |-.+++.||+++|+|+|+. |.......+.+. +| .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEEC-
Confidence 478888885556679999888 6543 3346899999999999996 333344444331 12 677664
Q ss_pred CCCCcccHHHHHHHHHHHhCCHHHHHHHH
Q 012652 402 DESGIITGEEISNKLVQVLGDQNFKARAL 430 (459)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 430 (459)
.-+.+++.++|.++++|++.++++.
T Consensus 426 ----~~d~~~la~ai~~ll~~~~~~~~~~ 450 (475)
T cd03813 426 ----PADPEALARAILRLLKDPELRRAMG 450 (475)
T ss_pred ----CCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 4579999999999999987555443
No 111
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=0.0003 Score=65.85 Aligned_cols=219 Identities=16% Similarity=0.086 Sum_probs=115.0
Q ss_pred CCEEEEcCCccCchhhhccCCcccccc-ccccCCCCCCCCCCCCCCCchHHHHhccCCCCeEEEEEeCCcccCCHHHHHH
Q 012652 216 ADFQFCNSTYELEPGAFNMIPELLPVG-PLLASNRLGNSAGHFWPEDSTCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQE 294 (459)
Q Consensus 216 ~~~~l~~~~~~l~~~~~~~~p~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~ 294 (459)
+|.+++--.++-++......| +.||| |+....+. .+..+.+.+-+....+++++.+-.||-.+-=...+..
T Consensus 137 ~D~lLailPFE~~~y~k~g~~-~~yVGHpl~d~i~~-------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~ 208 (381)
T COG0763 137 VDHLLAILPFEPAFYDKFGLP-CTYVGHPLADEIPL-------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPP 208 (381)
T ss_pred hhHeeeecCCCHHHHHhcCCC-eEEeCChhhhhccc-------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHH
Confidence 456666666555555333344 89999 44443322 1333445555655566779999999853211122333
Q ss_pred HHHHHhhC-----CCCEEEEEcCCCCCCCCCCCChhHHHH-hcCCc-eeeccc-chh--hhhcCCCccceeeccCchhHH
Q 012652 295 LALGLEIC-----NRPFLWVVRPDITTDANDVYPRGFQER-VATRG-QMIGWA-PQQ--RVLSHPSIACFLSHCGWNSTM 364 (459)
Q Consensus 295 ~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~nv-~i~~~v-pq~--~iL~~~~~~~~I~HgG~~s~~ 364 (459)
+.++...+ +.+|++-.... .-+...+. ...+. ...-++ ++. +.+..||+ .+.-+|.. +.
T Consensus 209 f~~a~~~l~~~~~~~~~vlp~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tL 277 (381)
T COG0763 209 FVQAAQELKARYPDLKFVLPLVNA--------KYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TL 277 (381)
T ss_pred HHHHHHHHHhhCCCceEEEecCcH--------HHHHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HH
Confidence 44444322 24555544322 00111111 11122 122222 222 47888887 66666643 56
Q ss_pred HhhhcCCceecccc-ccccchhhhhhhceeeeeeeeec-------CC--CCcccHHHHHHHHHHHhCCH----HHHHHHH
Q 012652 365 EGVSNGIPFLCWPY-FVDQFLNESYICDIWKVGLKLDK-------DE--SGIITGEEISNKLVQVLGDQ----NFKARAL 430 (459)
Q Consensus 365 eal~~gvP~v~~P~-~~DQ~~na~rv~~~~G~G~~~~~-------~~--~~~~~~~~l~~~i~~ll~~~----~~~~~a~ 430 (459)
|+..+|+|||+.=- ..=-+.-++++.. ..-.-..++ .+ ....+++.|.+++..++.|. .+++...
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~ 356 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFR 356 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 99999999987621 1111112233322 111100010 00 25578999999999999998 3555555
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 431 ELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 431 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
+|.+.++ .+++++.+.+.+++.+.
T Consensus 357 ~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 357 ELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 5555554 35688888877777653
No 112
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.06 E-value=0.00068 Score=68.21 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=58.1
Q ss_pred cCCceeecccchhhhhcCCCccceee---ccC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecC--CC
Q 012652 331 ATRGQMIGWAPQQRVLSHPSIACFLS---HCG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKD--ES 404 (459)
Q Consensus 331 ~~nv~i~~~vpq~~iL~~~~~~~~I~---HgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~--~~ 404 (459)
.++|.+.++.+..+++..+++ +|. .-| ..+++||+++|+|+|+.... ..+...++. -.-|..++.. +.
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~-g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIED-NKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccC-CCCEEEEeCCcccc
Confidence 456788888888889999998 665 233 36889999999999998432 123344444 2456666521 00
Q ss_pred Cccc-HHHHHHHHHHHhCCH
Q 012652 405 GIIT-GEEISNKLVQVLGDQ 423 (459)
Q Consensus 405 ~~~~-~~~l~~~i~~ll~~~ 423 (459)
..-+ .++|+++|.++++++
T Consensus 449 d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred chhHHHHHHHHHHHHHhChH
Confidence 1112 788999999999544
No 113
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.05 E-value=0.00014 Score=71.56 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=75.2
Q ss_pred CCceeecccchhh---hhcCCCccceeeccC----chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCC
Q 012652 332 TRGQMIGWAPQQR---VLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDES 404 (459)
Q Consensus 332 ~nv~i~~~vpq~~---iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 404 (459)
++|.+.+|+++.+ ++..+++.+||...- .++++||+++|+|+|+.. .......+.+ -+.|..+.
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~-~~~G~l~~---- 359 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDN-GGNGLLLS---- 359 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcC-CCcEEEeC----
Confidence 5678889999764 555444444775543 468999999999999874 4445556665 24888774
Q ss_pred CcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 012652 405 GIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFL 454 (459)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (459)
..-+.+++.++|.++++|++.++ +|++..++.+.+.-+.....++|+
T Consensus 360 ~~~~~~~la~~I~~ll~~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 360 KDPTPNELVSSLSKFIDNEEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CCCCHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 44578999999999999876443 344455554444556656655554
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.04 E-value=5.1e-05 Score=64.92 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=68.1
Q ss_pred hcCCceeecccch---hhhhcCCCccceeec----cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecC
Q 012652 330 VATRGQMIGWAPQ---QRVLSHPSIACFLSH----CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKD 402 (459)
Q Consensus 330 ~~~nv~i~~~vpq---~~iL~~~~~~~~I~H----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~ 402 (459)
..+++.+.+++++ .+++..+++ +|+. |...++.||+++|+|+|+. +...+...+.+ -+.|..++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~-~~~g~~~~-- 141 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIND-GVNGFLFD-- 141 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGT-TTSEEEES--
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeecc-ccceEEeC--
Confidence 4578889999983 358999888 7776 5667999999999999986 56666677776 36788885
Q ss_pred CCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 403 ESGIITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 403 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
..+.+++.++|.+++++++.+++..+
T Consensus 142 ---~~~~~~l~~~i~~~l~~~~~~~~l~~ 167 (172)
T PF00534_consen 142 ---PNDIEELADAIEKLLNDPELRQKLGK 167 (172)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 23999999999999998865555443
No 115
>PLN02316 synthase/transferase
Probab=98.01 E-value=0.018 Score=61.94 Aligned_cols=115 Identities=7% Similarity=-0.007 Sum_probs=68.2
Q ss_pred cCCceeecccchh---hhhcCCCccceeecc---C-chhHHHhhhcCCceecccccc--ccchh-------hhhhhceee
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFV--DQFLN-------ESYICDIWK 394 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~--DQ~~n-------a~rv~~~~G 394 (459)
++++.+....+.. .++..+|+ |+.-+ | ..+.+||+++|+|.|+....+ |.-.. ++..-. -+
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EP 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CC
Confidence 3566665444443 58899888 77543 2 358889999999988765432 22111 111001 14
Q ss_pred eeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012652 395 VGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLE 455 (459)
Q Consensus 395 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (459)
-|..+ ...+++.|..+|.++|.+ |.+....+++..++.+...-+-.+..++.++
T Consensus 976 tGflf-----~~~d~~aLa~AL~raL~~--~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~ 1029 (1036)
T PLN02316 976 NGFSF-----DGADAAGVDYALNRAISA--WYDGRDWFNSLCKRVMEQDWSWNRPALDYME 1029 (1036)
T ss_pred ceEEe-----CCCCHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 67777 456799999999999964 2334444555555554444455455544443
No 116
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.96 E-value=0.0012 Score=58.83 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=36.7
Q ss_pred cCCceeecccch-h---hhhcCCCccceeeccC----chhHHHhhhcCCceeccccccc
Q 012652 331 ATRGQMIGWAPQ-Q---RVLSHPSIACFLSHCG----WNSTMEGVSNGIPFLCWPYFVD 381 (459)
Q Consensus 331 ~~nv~i~~~vpq-~---~iL~~~~~~~~I~HgG----~~s~~eal~~gvP~v~~P~~~D 381 (459)
.+|+.+.+++++ + .++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 467888888632 2 25555887 787776 7899999999999999876543
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.93 E-value=0.00074 Score=65.89 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=72.8
Q ss_pred hcCCceeecccchh---hhhcCCCccceeec----cCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeec
Q 012652 330 VATRGQMIGWAPQQ---RVLSHPSIACFLSH----CGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDK 401 (459)
Q Consensus 330 ~~~nv~i~~~vpq~---~iL~~~~~~~~I~H----gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~ 401 (459)
...++.+.+++|+. +++..+|+ +|.. .|. .++.||+++|+|+|+... ..+...+.+ -..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~-~~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLE-GITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhccc-CCceEEEe-
Confidence 35678888999865 46999998 6653 333 577899999999999854 234445555 25676553
Q ss_pred CCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 402 DESGIITGEEISNKLVQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
...+.+++.++|.++++|++.+ ++++..++.+...-+-....+++.+.
T Consensus 327 ---~~~d~~~la~~I~~ll~d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~ 374 (380)
T PRK15484 327 ---EPMTSDSIISDINRTLADPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQ 374 (380)
T ss_pred ---CCCCHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3457999999999999998653 33444433322233444444444443
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.92 E-value=0.0048 Score=60.62 Aligned_cols=114 Identities=11% Similarity=0.000 Sum_probs=65.2
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHhhCCCCE-EEEEcCCCCCCCCCCCChhHHHHhcCCceeecccc-h---hhhhcCCCc
Q 012652 277 IYVAFGSHTVLDHNQFQELALGLEICNRPF-LWVVRPDITTDANDVYPRGFQERVATRGQMIGWAP-Q---QRVLSHPSI 351 (459)
Q Consensus 277 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vp-q---~~iL~~~~~ 351 (459)
+++..|.....+.+-+..+++|+..++..+ ++.++.. .. .. .+++...++.. + .+++..+|+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g----~~-~~--------~~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF----SP-FT--------AGNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC----Cc-cc--------ccceEEecCcCCHHHHHHHHHhCCE
Confidence 334445422223334567888887765443 3334432 10 00 23455556653 2 346777888
Q ss_pred cceeecc----CchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHH
Q 012652 352 ACFLSHC----GWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKL 416 (459)
Q Consensus 352 ~~~I~Hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i 416 (459)
||.-. -..++.||+++|+|+|+....+ ....+.. +-|..+++ -+.+.|++++
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 77643 2468899999999999996654 2223332 56887753 3677887754
No 119
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.92 E-value=0.00049 Score=66.87 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=61.1
Q ss_pred cCCceeecccchh-hhhcCCCccceeec--cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcc
Q 012652 331 ATRGQMIGWAPQQ-RVLSHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGII 407 (459)
Q Consensus 331 ~~nv~i~~~vpq~-~iL~~~~~~~~I~H--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~ 407 (459)
++++.+.++.++. .++..+++-++.++ |...++.||+++|+|+|+..... .....+.. -..|..++ .-
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~-----~~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVP-----KG 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeC-----CC
Confidence 4667777776654 58999998444454 23468999999999999874321 23344554 36777774 45
Q ss_pred cHHHHHHHHHHHhCCHHH
Q 012652 408 TGEEISNKLVQVLGDQNF 425 (459)
Q Consensus 408 ~~~~l~~~i~~ll~~~~~ 425 (459)
+.+++.++|.+++.|++.
T Consensus 331 d~~~la~~i~~ll~~~~~ 348 (372)
T cd04949 331 DIEALAEAIIELLNDPKL 348 (372)
T ss_pred cHHHHHHHHHHHHcCHHH
Confidence 799999999999999743
No 120
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.84 E-value=0.021 Score=51.97 Aligned_cols=106 Identities=20% Similarity=0.078 Sum_probs=72.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChH-HHHHHHHHh
Q 012652 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNSEY--NHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPG-KLIEKVLQV 88 (459)
Q Consensus 12 ~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~ 88 (459)
.-.-|+..+..|..+|.++||+|.+.+-+. ..+.++.. |+.+..+...- ...+. ++.+...+
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~g-----~~tl~~Kl~~~~eR- 72 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKHG-----GVTLKEKLLESAER- 72 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecccC-----CccHHHHHHHHHHH-
Confidence 345688899999999999999999988643 44555555 77777765321 12222 22222221
Q ss_pred ccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcchh
Q 012652 89 MPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCAA 140 (459)
Q Consensus 89 ~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~~ 140 (459)
.-.+.+++.+ ++||+.+. ...+.+..+|.-+|+|.+.+....-.
T Consensus 73 -~~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 73 -VYKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred -HHHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 1234555555 99999999 56778999999999999998766543
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00018 Score=56.33 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=78.9
Q ss_pred EEEEeCCcccCCHHHH--HHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeeccc--c-hhhhhcCCCc
Q 012652 277 IYVAFGSHTVLDHNQF--QELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWA--P-QQRVLSHPSI 351 (459)
Q Consensus 277 v~vs~Gs~~~~~~~~~--~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~v--p-q~~iL~~~~~ 351 (459)
++||-||....-...+ .++..-.+....++|+.++.. . ..| +.. .++.+|. + -+.+-..+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~----d--~kp------vag-l~v~~F~~~~kiQsli~darI 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG----D--IKP------VAG-LRVYGFDKEEKIQSLIHDARI 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC----C--ccc------ccc-cEEEeechHHHHHHHhhcceE
Confidence 7899998732111221 123333333456789998865 1 111 011 2455443 3 3457777777
Q ss_pred cceeeccCchhHHHhhhcCCceeccccc--------cccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHh
Q 012652 352 ACFLSHCGWNSTMEGVSNGIPFLCWPYF--------VDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 352 ~~~I~HgG~~s~~eal~~gvP~v~~P~~--------~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
+|+|+|.||+..++..++|.+++|-. ..|-.-|..+.+ ++.=+...+ .+..-.+.+......++
T Consensus 69 --VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp--te~~L~a~l~~s~~~v~ 140 (161)
T COG5017 69 --VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP--TELVLQAGLQVSVADVL 140 (161)
T ss_pred --EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC--CchhhHHhHhhhhhhhc
Confidence 99999999999999999999999954 358888889988 688777754 11112344444444444
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.79 E-value=0.028 Score=55.23 Aligned_cols=173 Identities=12% Similarity=0.177 Sum_probs=98.9
Q ss_pred HHhccCCCCeEEEEEeCCcccC------C-H---HHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCCh------hHHHH
Q 012652 266 KWLDQQQPKSVIYVAFGSHTVL------D-H---NQFQELALGLEICNRPFLWVVRPDITTDANDVYPR------GFQER 329 (459)
Q Consensus 266 ~~l~~~~~~~~v~vs~Gs~~~~------~-~---~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~ 329 (459)
.|+.....++.|.++.-..... . . +.+..+++.+.+.+++++++..-.. .....++ .+.+.
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~---~~~~~~dD~~~~~~l~~~ 302 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTG---IDSYNKDDRMVALNLRQH 302 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccC---ccCCCCchHHHHHHHHHh
Confidence 4554433456788876533211 1 1 2344455555556888876653210 0000111 22233
Q ss_pred hc--CCceee--cccchh--hhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeee-eecC
Q 012652 330 VA--TRGQMI--GWAPQQ--RVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLK-LDKD 402 (459)
Q Consensus 330 ~~--~nv~i~--~~vpq~--~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~-~~~~ 402 (459)
++ .++.+. .+-|.+ .+++++++ +|.. =.=++.-|+.+|||.+.++. |....+ .+.. +|.... .+.
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~~K~~~-~~~~-lg~~~~~~~~- 374 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--EHKSAG-IMQQ-LGLPEMAIDI- 374 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--hHHHHH-HHHH-cCCccEEech-
Confidence 33 233332 233433 68889887 8865 33356678899999999877 333333 3355 677765 553
Q ss_pred CCCcccHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 403 ESGIITGEEISNKLVQVLGDQ-NFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 403 ~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
..++.++|.+.+.++++|. +++++.++-.++++. .....+.++++.+
T Consensus 375 --~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 375 --RHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred --hhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 7788999999999999985 566666665555554 2334555666554
No 123
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.73 E-value=0.00042 Score=67.68 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=81.9
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHH------hcCCceeecccchhh--
Q 012652 273 PKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQER------VATRGQMIGWAPQQR-- 344 (459)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~nv~i~~~vpq~~-- 344 (459)
+..++|++|....+..++.++.-.+.++..+.-.+|....... -.+.+.+. -++.+.+.++.|+.+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~------~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS------GEARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT------HHHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH------HHHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 4569999999999999999999999998899888888764311 01222221 235677777777655
Q ss_pred -hhcCCCccce---eeccCchhHHHhhhcCCceecccccc-ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 345 -VLSHPSIACF---LSHCGWNSTMEGVSNGIPFLCWPYFV-DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 345 -iL~~~~~~~~---I~HgG~~s~~eal~~gvP~v~~P~~~-DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
.+..+|+ + ...+|.+|++|||+.|||+|.+|-.. =...-+..+.. +|+.-.+- -+.++-.+...++
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA------~s~~eYv~~Av~L 427 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA------DSEEEYVEIAVRL 427 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-------SSHHHHHHHHHHH
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC------CCHHHHHHHHHHH
Confidence 4455666 4 35678999999999999999999532 22333344555 68876663 2566666666677
Q ss_pred hCCHHHHHHH
Q 012652 420 LGDQNFKARA 429 (459)
Q Consensus 420 l~~~~~~~~a 429 (459)
-+|++++++.
T Consensus 428 a~D~~~l~~l 437 (468)
T PF13844_consen 428 ATDPERLRAL 437 (468)
T ss_dssp HH-HHHHHHH
T ss_pred hCCHHHHHHH
Confidence 7777655443
No 124
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.72 E-value=0.033 Score=55.86 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=66.8
Q ss_pred cCCceeecccch-hhhhcCCCccceeec---cC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 331 ATRGQMIGWAPQ-QRVLSHPSIACFLSH---CG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~~~vpq-~~iL~~~~~~~~I~H---gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.++|.+.+|..+ ..+|..+|+ ||.. -| .+++.||+++|+|+|+... ..+...+.+ -..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEECC----
Confidence 477888888654 358999998 7753 44 4689999999999998843 445566665 267777753
Q ss_pred cccHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 406 IITGEEISNKL---VQVLGDQNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 406 ~~~~~~l~~~i---~~ll~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
-+.+.+.+++ .+++.+. +....+.+..++.+...-+.+..++++.+-+
T Consensus 523 -~D~~aLa~ai~lA~aL~~ll---~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 523 -AQTVNLDQACRYAEKLVNLW---RSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred -CChhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 2344444443 2232221 1122334444444444456666666665544
No 125
>PRK14099 glycogen synthase; Provisional
Probab=97.68 E-value=0.078 Score=53.42 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCCEEEEEcC---C---CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 1 MSSPHILVFST---P---AQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 1 m~~~~il~~~~---~---~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|++|||+|++. | ..|=-.-.-+|.++|+++||+|.++.+..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 88999999872 2 23555667889999999999999999844
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.58 E-value=0.017 Score=54.76 Aligned_cols=105 Identities=16% Similarity=0.097 Sum_probs=67.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeE-EEecCCCCCCCCCCCChHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIR-LVSIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 81 (459)
|||++-...-|++.-+.++.++|+++ +.+|++++.+.+.+.++.. +.++ +..++.. .... .
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~--------p~vd~v~~~~~~-~~~~---~---- 64 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH--------PAVDEVIPVALR-RWRK---T---- 64 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC--------CCccEEEEechh-hhhh---c----
Confidence 68999988999999999999999997 9999999998888887654 3453 3333311 0000 0
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCc
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLR 130 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP 130 (459)
.+.......+..+.+.++. .+||++|.-........++...+.+
T Consensus 65 --~~~~~~~~~~~~~~~~lr~---~~yD~vi~~~~~~~s~~l~~~~~~~ 108 (319)
T TIGR02193 65 --LFSAATWREIKALRALLRA---ERYDAVIDAQGLIKSALVARMARGP 108 (319)
T ss_pred --cccchhHHHHHHHHHHHhh---ccchhhhhhhhhHHHHHHHHhhCCc
Confidence 0000111234455555665 8999998654444445566666633
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.28 E-value=0.0013 Score=53.51 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=49.9
Q ss_pred cCCceeecccchh-hhhcCCCccceeec--cC-chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCc
Q 012652 331 ATRGQMIGWAPQQ-RVLSHPSIACFLSH--CG-WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGI 406 (459)
Q Consensus 331 ~~nv~i~~~vpq~-~iL~~~~~~~~I~H--gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 406 (459)
.+|+.+.+|++.. +++..+++.+..+. .| .+++.|++++|+|+|+.+. .....++. .+.|..+. .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~~----~- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLVA----N- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T----T-
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEEC----C-
Confidence 5699999999743 68999999555442 23 4899999999999999865 12223333 47776662 2
Q ss_pred ccHHHHHHHHHHHhCC
Q 012652 407 ITGEEISNKLVQVLGD 422 (459)
Q Consensus 407 ~~~~~l~~~i~~ll~~ 422 (459)
+++++.++|.++++|
T Consensus 121 -~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 -DPEELAEAIERLLND 135 (135)
T ss_dssp --HHHHHHHHHHHHH-
T ss_pred -CHHHHHHHHHHHhcC
Confidence 799999999999865
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.03 E-value=0.015 Score=47.54 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=65.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEK 84 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (459)
|||+++.....| ...+++.|.++||+|++++.....+..... .++.+..++... ... ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~~------k~~---~~~ 60 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSPR------KSP---LNY 60 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCCC------Ccc---HHH
Confidence 578888766666 557899999999999999996554333322 378888774331 111 111
Q ss_pred HHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc---hHHHHHHHcC-CceEEEeC
Q 012652 85 VLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG---WSMEVAEKMK-LRRAVIWT 136 (459)
Q Consensus 85 ~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~---~~~~~A~~~g-iP~i~~~~ 136 (459)
+ .. . .+..+++. .+||+|.+-.... .+..++...| +|++....
T Consensus 61 ~-~~-~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 61 I-KY-F-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred H-HH-H-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 11 1 34444444 8999997766543 2444567788 89986444
No 129
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.01 E-value=0.0023 Score=61.21 Aligned_cols=109 Identities=13% Similarity=0.281 Sum_probs=78.9
Q ss_pred cCCceeecccchhhh---hcCCCccceeec-------cCc------hhHHHhhhcCCceeccccccccchhhhhhhceee
Q 012652 331 ATRGQMIGWAPQQRV---LSHPSIACFLSH-------CGW------NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWK 394 (459)
Q Consensus 331 ~~nv~i~~~vpq~~i---L~~~~~~~~I~H-------gG~------~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G 394 (459)
.+||...+|+|+.++ |.. +.+++... +.+ +-+.+++++|+|+|+. ++...+..|++ -+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~-~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE-NG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-CC
Confidence 578999999998865 443 33222221 111 2367889999999985 56778888988 59
Q ss_pred eeeeeecCCCCcccHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012652 395 VGLKLDKDESGIITGEEISNKLVQVLGDQ--NFKARALELKEITMSSVREGGSSYKTFQNFLEW 456 (459)
Q Consensus 395 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (459)
+|+.++ +.+++.+++.++..+. .+++|++++++.+++ |....+++++++..
T Consensus 280 ~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 280 LGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred ceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 999984 4678999998865332 578999999999986 77777777777653
No 130
>PHA01633 putative glycosyl transferase group 1
Probab=96.86 E-value=0.017 Score=54.64 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=56.2
Q ss_pred hcCCceee---cccchh---hhhcCCCccceeecc---C-chhHHHhhhcCCceecccc------cccc------chhhh
Q 012652 330 VATRGQMI---GWAPQQ---RVLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPY------FVDQ------FLNES 387 (459)
Q Consensus 330 ~~~nv~i~---~~vpq~---~iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~------~~DQ------~~na~ 387 (459)
.++++.+. +++++. +++..+|+ ||.-+ | ..++.||+++|+|+|+.-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45678877 455544 57889888 77642 3 4578899999999998743 2232 22222
Q ss_pred hhh--ceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 388 YIC--DIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 388 rv~--~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
-.. + .|.|..+ ...++++++++|.+++..
T Consensus 277 ~~~~~~-~g~g~~~-----~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKE-HGQKWKI-----HKFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCcc-cCceeee-----cCCCHHHHHHHHHHHHhc
Confidence 111 2 3666666 467999999999999543
No 131
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.82 E-value=0.017 Score=57.20 Aligned_cols=151 Identities=18% Similarity=0.216 Sum_probs=97.5
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHH------hcCCceeecccchhh-
Q 012652 272 QPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQER------VATRGQMIGWAPQQR- 344 (459)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~nv~i~~~vpq~~- 344 (459)
++..+||++|--....+++.++.-++.+...+--++|.......++ .+|... -|+.|.+.+-+...+
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHH
Confidence 3466999999988999999999999999999999999987653322 333332 134555555554433
Q ss_pred ----hhcCCCccceeeccCchhHHHhhhcCCceeccccccccchh-hhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 345 ----VLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLN-ESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 345 ----iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~n-a~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
.|..-.+.-+.|. |+.|.++.+++|||||.+|.-.--... +..+.. +|+|-.+-. +.++-.+.-.++
T Consensus 830 vrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak------~~eEY~~iaV~L 901 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK------NREEYVQIAVRL 901 (966)
T ss_pred HHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh------hHHHHHHHHHHh
Confidence 3333333446666 788999999999999999975433333 334455 799986632 455554444455
Q ss_pred hCCHHHHHHHHHHHHHHHhh
Q 012652 420 LGDQNFKARALELKEITMSS 439 (459)
Q Consensus 420 l~~~~~~~~a~~l~~~~~~~ 439 (459)
-.|.. ..++++.+++++
T Consensus 902 atd~~---~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 902 ATDKE---YLKKLRAKLRKA 918 (966)
T ss_pred hcCHH---HHHHHHHHHHHH
Confidence 44543 344455555544
No 132
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.64 E-value=0.52 Score=45.32 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=72.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEe-cCCCCCCCCCCCChHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVS-IPDGMEPWEERTDPGK 80 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~ 80 (459)
||||++-..+-|++.-+..+.+.|+++ +.+|++++.+.+.+.++.. +.++-.- ++.. . . ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~~--~---~--~~~ 65 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPLG--H---G--ALE 65 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecccc--c---c--hhh
Confidence 589999999999999999999999985 8999999998888887654 2443321 1111 0 0 000
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEE
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~ 133 (459)
+ ....++++.++. .+||++|.=....-...++...|+|.-.
T Consensus 66 ----~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 66 ----I-----GERRRLGHSLRE---KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ----h-----HHHHHHHHHHHh---cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 123345566666 8999998765555666778888888765
No 133
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.63 E-value=0.43 Score=45.93 Aligned_cols=106 Identities=12% Similarity=0.142 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEE-EecCCCCCCCCCCCChH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRL-VSIPDGMEPWEERTDPG 79 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~ 79 (459)
++|||++-...-|++.-+..+.+.|+++ +.+|++++.+.+.+.++.. +.++- ..++.. .....
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~------~~~~~ 70 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNK------KAGAS 70 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEeccc------cccHH
Confidence 5799999999999999999999999986 8999999999888877554 34432 222211 00000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEE
Q 012652 80 KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~ 133 (459)
. .+ .....++..++. .+||++|.-........++...|.|..+
T Consensus 71 ~---~~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 71 E---KI-----KNFFSLIKVLRA---NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred H---HH-----HHHHHHHHHHhh---CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0 00 123345666776 8999999665444455667777887765
No 134
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.60 E-value=0.34 Score=46.28 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=70.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEE-ecCCCCCCCCCCCChHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLV-SIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~ 81 (459)
|||++-..+-|++.-+..+.+.|++. +.+|++++.+.+.+.++.. +.++-. .++.. . . ...
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~--~---~--~~~- 64 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPLG--H---G--ALE- 64 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCCc--c---c--chh-
Confidence 68999999999999999999999986 8999999998887777654 233221 11111 0 0 000
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEE
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~ 133 (459)
+ ....+++..++. .++|++|.-....-...++...|+|.-.
T Consensus 65 ---~-----~~~~~~~~~lr~---~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 65 ---L-----TERRRLGRSLRE---ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---h-----hHHHHHHHHHhh---cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 122345566666 7999999876666566677888888654
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.60 E-value=0.23 Score=47.13 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=65.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEE-EecCCCCCCCCCCCChHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRL-VSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~ 80 (459)
||||++-..+-|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++- ..++.. . . .
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~--~---~---~- 63 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH--------PAVDRVIPVAIR--R---W---R- 63 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC--------CCccEEEeechh--H---h---h-
Confidence 589999999999999999999999986 9999999998887766543 23332 222210 0 0 0
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHc
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKM 127 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~ 127 (459)
...+.......+.+++..++. .++|++|.-........++..+
T Consensus 64 -~~~~~~~~~~~~~~~~~~lr~---~~yD~vidl~~~~~s~~l~~~~ 106 (322)
T PRK10964 64 -KAWFSAPIRAERKAFREALQA---EQYDAVIDAQGLVKSAALVTRL 106 (322)
T ss_pred -hcccchhHHHHHHHHHHHHhc---cCCCEEEEccchHHHHHHHHHh
Confidence 000011112345667777777 8999998654333334444333
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.56 E-value=0.3 Score=46.88 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=71.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeE-EEecCCCCCCCCCCCChHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIR-LVSIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 81 (459)
|||++-..+-|++.-+..+.+.|+++ +.+|++++.+.+.+.++.. +.++ +..++..... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~~----~~---- 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKAK----AG---- 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhhc----ch----
Confidence 68999999999999999999999985 8999999999888877654 3443 2333211100 00
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEE
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~ 133 (459)
...+ ...-.++..++. .++|++|.-........++...|.|.-+
T Consensus 65 ~~~~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 65 ERKL-----ANQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHH-----HHHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0011 112235566666 8999999765555667788889999765
No 137
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.43 E-value=0.2 Score=46.54 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=68.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEE-EecCCCCCCCCCCCChHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRL-VSIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 81 (459)
|||++-..+-|++.-+..+.++|+++ +-+|++++.+...+.++.. +.++- ..++... .
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~~--------~--- 61 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKKH--------G--- 61 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCcc--------c---
Confidence 68999989999999999999999986 4899999998888777654 23332 2222110 0
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEE
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~ 133 (459)
.........++..++. .++|+++.-........++...+++...
T Consensus 62 -----~~~~~~~~~~~~~l~~---~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 62 -----KLGLGARRRLARALRR---RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -----ccchHHHHHHHHHHhh---cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 0011223455666666 7899998776655444556666666553
No 138
>PRK14098 glycogen synthase; Provisional
Probab=96.36 E-value=0.059 Score=54.34 Aligned_cols=130 Identities=13% Similarity=0.014 Sum_probs=74.0
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhH---HHHhcCCceeecccchh---hhhc
Q 012652 275 SVIYVAFGSHTV-LDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGF---QERVATRGQMIGWAPQQ---RVLS 347 (459)
Q Consensus 275 ~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~nv~i~~~vpq~---~iL~ 347 (459)
.++++..|.... ...+.+...+..+.+.+.+++++-.+. ....+.+ .++.++++.+...++.. .+++
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a 380 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGD------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA 380 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCC------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH
Confidence 356666676642 122333232223333355655554322 0011222 22346788888888764 5889
Q ss_pred CCCccceeecc---Cc-hhHHHhhhcCCceecccccc--ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHh
Q 012652 348 HPSIACFLSHC---GW-NSTMEGVSNGIPFLCWPYFV--DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 348 ~~~~~~~I~Hg---G~-~s~~eal~~gvP~v~~P~~~--DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
.+|+ |+.-+ |. .+.+||+++|+|.|+....+ |...+ ...+ -+.|..++ ..+++.|.++|.+++
T Consensus 381 ~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~-~~~G~l~~-----~~d~~~la~ai~~~l 449 (489)
T PRK14098 381 GLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSED-KGSGFIFH-----DYTPEALVAKLGEAL 449 (489)
T ss_pred hCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCC-CCceeEeC-----CCCHHHHHHHHHHHH
Confidence 9998 76543 22 46789999999888876532 22111 1112 26777774 457899999999876
No 139
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.94 Score=43.24 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
++||+++-..+-|++.=...+-+.|+++ +.++++++.+.+.+.++.. +.++-...-.. ....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~-----~~~~--- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDK-----KKKG--- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccccc-----cccc---
Confidence 4789999999999999999999999987 5999999999888887654 23332211010 0000
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEE
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVI 134 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~ 134 (459)
........+.+.+++ .++|+||.=...+-...++...++|.-.-
T Consensus 65 -------~~~~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 -------LGLKERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred -------cchHHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 112344556666666 78999998877776777788888887763
No 140
>PHA01630 putative group 1 glycosyl transferase
Probab=96.25 E-value=0.18 Score=47.96 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=61.8
Q ss_pred cccchhh---hhcCCCcccee--ec-cC-chhHHHhhhcCCceecccccc--ccc---hhhhhhhce----------eee
Q 012652 338 GWAPQQR---VLSHPSIACFL--SH-CG-WNSTMEGVSNGIPFLCWPYFV--DQF---LNESYICDI----------WKV 395 (459)
Q Consensus 338 ~~vpq~~---iL~~~~~~~~I--~H-gG-~~s~~eal~~gvP~v~~P~~~--DQ~---~na~rv~~~----------~G~ 395 (459)
.++|+.+ ++..+|+ || ++ .| ..++.||+++|+|+|+.-..+ |.- .|+-.+... .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466554 7999998 55 33 22 468899999999999986542 322 222222100 135
Q ss_pred eeeeecCCCCcccHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 396 GLKLDKDESGIITGEEISNKLVQVLGD---QNFKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 396 G~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
|..++ .+.+++.+++.++|.| +.++++.+.-+....+ .-+-.+..+++.+-+
T Consensus 274 G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~ 328 (331)
T PHA01630 274 GYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKIL 328 (331)
T ss_pred ccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 65553 2578888888888877 4555554444333333 234444444444433
No 141
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.16 E-value=0.19 Score=47.13 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.1
Q ss_pred chhhhhcCCCccceeeccCchhHHHhhhcCCceecccccc
Q 012652 341 PQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFV 380 (459)
Q Consensus 341 pq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~ 380 (459)
|+..+|..+|. .+||---.+-+.||+..|+|+.+++...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67789999887 3445444577789999999999999876
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.11 E-value=0.066 Score=40.18 Aligned_cols=82 Identities=13% Similarity=0.057 Sum_probs=53.3
Q ss_pred ccCchhHHHhhhcCCceeccccccccchhhhhhhceee-eeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 012652 357 HCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWK-VGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALELKEI 435 (459)
Q Consensus 357 HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G-~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 435 (459)
+|-...+.|++++|+|+|.-.. ......+.. | -++.. . +.+++.++|..+++|++.+++. ++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~i---a~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRI---AKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHH---HHH
Confidence 4556789999999999998844 333333332 4 34333 2 8999999999999998644433 233
Q ss_pred HHhhhhcCCChHHHHHHHH
Q 012652 436 TMSSVREGGSSYKTFQNFL 454 (459)
Q Consensus 436 ~~~~~~~~g~~~~~~~~~~ 454 (459)
.++.+....+....+++++
T Consensus 73 a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3333333567667776665
No 143
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.93 E-value=0.012 Score=44.49 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=42.2
Q ss_pred hHHHHhccCCCCeEEEEEeCCcccC---CH--HHHHHHHHHHhhCCCCEEEEEcCC
Q 012652 263 TCLKWLDQQQPKSVIYVAFGSHTVL---DH--NQFQELALGLEICNRPFLWVVRPD 313 (459)
Q Consensus 263 ~~~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~ 313 (459)
.+.+|+...+.+|-|++|+||.... .. ..+..++++++.++..+|......
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 4458999888999999999998542 22 478999999999999999998765
No 144
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=95.91 E-value=0.39 Score=48.10 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=62.3
Q ss_pred ecccchhh---hhcCCCccceee---ccCc-hhHHHhhhcCCc----eeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 337 IGWAPQQR---VLSHPSIACFLS---HCGW-NSTMEGVSNGIP----FLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 337 ~~~vpq~~---iL~~~~~~~~I~---HgG~-~s~~eal~~gvP----~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
.+++++.+ ++..+|+ ||. +-|. .++.||+++|+| +|+.-..+- + +. ..-|+.++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~---~~-~~~g~lv~----- 410 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A---EE-LSGALLVN----- 410 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h---hh-cCCCEEEC-----
Confidence 36777764 6899998 663 3454 467899999999 554422210 0 11 12355553
Q ss_pred cccHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012652 406 IITGEEISNKLVQVLGDQN--FKARALELKEITMSSVREGGSSYKTFQNFLEWV 457 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll~~~~--~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (459)
.-+.++++++|.++++++. -++..++.++... .-+...-.+++++++
T Consensus 411 p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 411 PYDIDEVADAIHRALTMPLEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 3478999999999998652 2333333333333 357777778877765
No 145
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=2.1 Score=39.99 Aligned_cols=355 Identities=12% Similarity=0.113 Sum_probs=173.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN--HKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
+.|+.++..+--||--++.-=|..|++.|.+|.+++.-.. .+.+.+. ++++++.++.--.......-..-
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h--------prI~ih~m~~l~~~~~~p~~~~l 83 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH--------PRIRIHGMPNLPFLQGGPRVLFL 83 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC--------CceEEEeCCCCcccCCCchhhhh
Confidence 6788888888889999999999999999999999986433 2333333 58999998743211111111112
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCC-CcchHHHHHHH----cCCceEEEeCcchhHHHHHhhcccccccC
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDG-FMGWSMEVAEK----MKLRRAVIWTSCAASVASIFCIPKLIDDG 155 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~-~~~~~~~~A~~----~giP~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (459)
....+++.. ..+-.++.. .++|+|+.-. -......++.. .|...++=|+...++....... |
T Consensus 84 ~lKvf~Qfl-~Ll~aL~~~------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~------g 150 (444)
T KOG2941|consen 84 PLKVFWQFL-SLLWALFVL------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKL------G 150 (444)
T ss_pred HHHHHHHHH-HHHHHHHhc------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhc------C
Confidence 222222211 122233332 7899886543 34455555544 4778887777666542221110 0
Q ss_pred CCCCCCCccccccccccCCCCCCCcccccccccCCcccccchhhhHHHHHHHHHHHhhccCCEEEEcCCccCchhhhccC
Q 012652 156 IIDSNGTPIRKQMIQLAPNMLEMNTEEFFWTRLGDITTQKMTSQKIIFDLSIRTIKAMKVADFQFCNSTYELEPGAFNMI 235 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 235 (459)
... +-+....+....+.......|-..+.+.+.+.+... -+...++....|+-+-+ .+.-
T Consensus 151 ---------~~h--------~lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWg--i~ra~v~YDrPps~~~~-l~~~ 210 (444)
T KOG2941|consen 151 ---------FQH--------PLVRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWG--INRAKVLYDRPPSKPTP-LDEQ 210 (444)
T ss_pred ---------CCC--------chHHHHHHHHHHhhcccccchhhHHHHHHHHHHhcC--CceeEEEecCCCCCCCc-hhHH
Confidence 000 001101111011111111111111222222211110 11223444444431111 0000
Q ss_pred -CccccccccccCCCCCCCCCCCCCCCchHHHHhc--------cCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhC----
Q 012652 236 -PELLPVGPLLASNRLGNSAGHFWPEDSTCLKWLD--------QQQPKSVIYVAFGSHTVLDHNQFQELALGLEIC---- 302 (459)
Q Consensus 236 -p~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---- 302 (459)
.-...+|..+..-..... .....+-..|+. ..+.+|.++||.-|- .+.+.+..+++|+..-
T Consensus 211 H~lf~~l~~d~~~f~ar~~----q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTsw--TpDEdf~ILL~AL~~y~~~~ 284 (444)
T KOG2941|consen 211 HELFMKLAGDHSPFRAREP----QDKALERTAFTKKDASGDVQLLPERPALLVSSTSW--TPDEDFGILLEALVIYEEQL 284 (444)
T ss_pred HHHHhhhccccchhhhccc----ccchhhhhhHhhhcccchhhhccCCCeEEEecCCC--CCcccHHHHHHHHHhhhhhh
Confidence 012224433221110000 001111111221 124577888876332 3556677777777522
Q ss_pred -----CC-CEEEEEcCCCCCCCCCCCChhHHHHhc----CCceee-cccc---hhhhhcCCCccceeeccCch-----hH
Q 012652 303 -----NR-PFLWVVRPDITTDANDVYPRGFQERVA----TRGQMI-GWAP---QQRVLSHPSIACFLSHCGWN-----ST 363 (459)
Q Consensus 303 -----~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~----~nv~i~-~~vp---q~~iL~~~~~~~~I~HgG~~-----s~ 363 (459)
+. .+++++++. .++.+.+.+.+. .+|.+. .|+. +..+|..+|+++-.|-...| -+
T Consensus 285 ~~~~~~lP~llciITGK------GPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKV 358 (444)
T KOG2941|consen 285 YDKTHNLPSLLCIITGK------GPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKV 358 (444)
T ss_pred hhccCCCCcEEEEEcCC------CchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhH
Confidence 11 355666544 344455444332 466665 7874 55699999997777665554 46
Q ss_pred HHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 364 MEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 364 ~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
..-.-+|+|+..+-+. ---..|.+. .-|.... ++++|++.+.-+..|
T Consensus 359 VDMFGcglPvcA~~fk----cl~ELVkh~-eNGlvF~-------Ds~eLa~ql~~lf~~ 405 (444)
T KOG2941|consen 359 VDMFGCGLPVCAVNFK----CLDELVKHG-ENGLVFE-------DSEELAEQLQMLFKN 405 (444)
T ss_pred HHhhcCCCceeeecch----hHHHHHhcC-CCceEec-------cHHHHHHHHHHHHhc
Confidence 6777889999887332 112233331 3455453 589999999999873
No 146
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.53 E-value=0.033 Score=46.27 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHH
Q 012652 18 IPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELI 97 (459)
Q Consensus 18 ~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (459)
.-+..|+++|.++||+|++++.......-+.. ..++.+..++-..... ....... ...+..++
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~l 67 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRPW-----PLRLLRF-----LRRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SSS-----GGGHCCH-----HHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccch-----hhhhHHH-----HHHHHHHH
Confidence 34678999999999999999975544422111 1367777665221111 0000000 02223333
Q ss_pred HHHhCCCCCCccEEEeCCCcc-hHHHHHH-HcCCceEEEeC
Q 012652 98 EEINGRDDEKIDCFISDGFMG-WSMEVAE-KMKLRRAVIWT 136 (459)
Q Consensus 98 ~~l~~~~~~~pDlvi~D~~~~-~~~~~A~-~~giP~i~~~~ 136 (459)
..+. .+||+|.+..... ....++. ..++|++....
T Consensus 68 -~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 68 -AARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -HHCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -hhhc---cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 2234 8999998776432 2334444 78999998654
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.52 E-value=0.11 Score=43.85 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=57.0
Q ss_pred hCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCc
Q 012652 29 KHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKI 108 (459)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p 108 (459)
++||+|++++........ . |++...+...-.......-....++...... +.+...+..|+++. +.|
T Consensus 1 q~gh~v~fl~~~~~~~~~--~---------GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--P---------GVRVVRYRPPRGPTPGTHPYVRDFEAAVLRG-QAVARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC--C---------CcEEEEeCCCCCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHcC-CCC
Confidence 479999999964443222 2 6777666542111111111111122222222 23445555566554 999
Q ss_pred cEEEeCCCcchHHHHHHHc-CCceEEEeCc
Q 012652 109 DCFISDGFMGWSMEVAEKM-KLRRAVIWTS 137 (459)
Q Consensus 109 Dlvi~D~~~~~~~~~A~~~-giP~i~~~~~ 137 (459)
|+|+....+-.+..+-+.+ ++|.+.+.-.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 9999998877888888988 8999986543
No 148
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.065 Score=52.93 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=74.5
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHH------hcCCceeecccchh--
Q 012652 272 QPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQER------VATRGQMIGWAPQQ-- 343 (459)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~nv~i~~~vpq~-- 343 (459)
+++.+||++|+...+..++.+..=++.++..+.-++|..+++. .......+.+. -.+..++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~----~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD----DAEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC----cHHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 4577999999999999999988888888888999999987741 11222222211 13556666666644
Q ss_pred -hhhcCCCcccee---eccCchhHHHhhhcCCceeccccccccc
Q 012652 344 -RVLSHPSIACFL---SHCGWNSTMEGVSNGIPFLCWPYFVDQF 383 (459)
Q Consensus 344 -~iL~~~~~~~~I---~HgG~~s~~eal~~gvP~v~~P~~~DQ~ 383 (459)
+=+..+|+ |. -.||..|..|+|+.|||+|..+ ++|+
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 45566666 65 4799999999999999999875 4554
No 149
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.97 E-value=0.074 Score=46.16 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=31.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
||||+.---+. +.--+..|+++|.+.||+|+++.+...++..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 57777775555 5566889999998888999999998776554
No 150
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=94.97 E-value=0.16 Score=50.62 Aligned_cols=101 Identities=10% Similarity=0.064 Sum_probs=69.5
Q ss_pred cccchhh---hhcCCCccceee---ccCc-hhHHHhhhcCCc----eeccccccccchhhhhhhceeeeeeeeecCCCCc
Q 012652 338 GWAPQQR---VLSHPSIACFLS---HCGW-NSTMEGVSNGIP----FLCWPYFVDQFLNESYICDIWKVGLKLDKDESGI 406 (459)
Q Consensus 338 ~~vpq~~---iL~~~~~~~~I~---HgG~-~s~~eal~~gvP----~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~ 406 (459)
..+++.+ ++..+|+ |+. +=|. .++.||+++|+| +|+.-..+ .+. . ++-|+.++ .
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~---~-l~~gllVn-----P 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQ---E-LNGALLVN-----P 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChH---H-hCCcEEEC-----C
Confidence 4566654 6889898 665 3365 577799999999 66663332 112 2 23466664 4
Q ss_pred ccHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 407 ITGEEISNKLVQVLGDQ--NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 407 ~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
.+.++++++|.++|+.+ +-+++.+++.+.+.+ .+...-.+++++.+.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 57999999999999754 566666666666553 577788888888775
No 151
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.65 E-value=0.59 Score=38.01 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
|++.+|++.+.++.+|-.-..-++..|..+|++|+++...-..
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~ 43 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQ 43 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 8899999999999999999999999999999999999875443
No 152
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.94 E-value=0.35 Score=40.71 Aligned_cols=101 Identities=21% Similarity=0.190 Sum_probs=51.9
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHH
Q 012652 13 AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGK 92 (459)
Q Consensus 13 ~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (459)
..|--.-+..|+++|+++||+|+++++........ . ............ .... ...+. ....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-----------~-~~~~~~~~~~~~--~~~~---~~~~~--~~~~ 71 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-----------E-LVKIFVKIPYPI--RKRF---LRSFF--FMRR 71 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-----------T-EEEE---TT-SS--TSS-----HHHH--HHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-----------h-ccceeeeeeccc--cccc---chhHH--HHHH
Confidence 45777788999999999999999998754432221 1 111111000000 0011 11111 1234
Q ss_pred HHHHHHHHhCCCCCCccEEEeCCCcc-hHHHHHHHcCCceEEEeCcch
Q 012652 93 LEELIEEINGRDDEKIDCFISDGFMG-WSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 93 ~~~l~~~l~~~~~~~pDlvi~D~~~~-~~~~~A~~~giP~i~~~~~~~ 139 (459)
+..+++. .+||+|-...... +...++.. ++|.+...+...
T Consensus 72 ~~~~i~~------~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 72 LRRLIKK------EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHH------HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHH------cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 5566666 7899995544333 33333434 999998877655
No 153
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.51 E-value=2 Score=43.62 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=57.9
Q ss_pred CCceeecccc--hh-hhhcCCCccceeecc---CchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 332 TRGQMIGWAP--QQ-RVLSHPSIACFLSHC---GWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 332 ~nv~i~~~vp--q~-~iL~~~~~~~~I~Hg---G~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
..|.+.++.. +. .++..+.+ +|.=+ |.++..||+.+|+|+| .......|+. -.=|..++
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEeC-----
Confidence 4566778777 43 58888666 88766 6679999999999999 4444555655 35555553
Q ss_pred cccHHHHHHHHHHHhCCHHHHH
Q 012652 406 IITGEEISNKLVQVLGDQNFKA 427 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll~~~~~~~ 427 (459)
+..+|.+++..+|.++.-.+
T Consensus 474 --d~~~l~~al~~~L~~~~~wn 493 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWN 493 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHH
Confidence 68999999999999984333
No 154
>PLN02939 transferase, transferring glycosyl groups
Probab=93.31 E-value=3.4 Score=44.50 Aligned_cols=91 Identities=9% Similarity=0.080 Sum_probs=58.7
Q ss_pred cCCceeecccchh---hhhcCCCccceeecc---C-chhHHHhhhcCCceecccccc--ccchh--hhhh-hceeeeeee
Q 012652 331 ATRGQMIGWAPQQ---RVLSHPSIACFLSHC---G-WNSTMEGVSNGIPFLCWPYFV--DQFLN--ESYI-CDIWKVGLK 398 (459)
Q Consensus 331 ~~nv~i~~~vpq~---~iL~~~~~~~~I~Hg---G-~~s~~eal~~gvP~v~~P~~~--DQ~~n--a~rv-~~~~G~G~~ 398 (459)
.++|.+..+.+.. .++..+|+ ||.-+ | ..+.+||+++|+|.|+....+ |.-.+ ...+ .+ -+-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEE
Confidence 3568887877764 58999998 77542 2 357899999999999876543 22211 1111 12 256766
Q ss_pred eecCCCCcccHHHHHHHHHHHhC----CHHHHHHH
Q 012652 399 LDKDESGIITGEEISNKLVQVLG----DQNFKARA 429 (459)
Q Consensus 399 ~~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~a 429 (459)
++ ..+++.|.++|.+++. |++.+++.
T Consensus 913 f~-----~~D~eaLa~AL~rAL~~~~~dpe~~~~L 942 (977)
T PLN02939 913 FL-----TPDEQGLNSALERAFNYYKRKPEVWKQL 942 (977)
T ss_pred ec-----CCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 64 3478889999988764 56544443
No 155
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.02 E-value=2.7 Score=41.64 Aligned_cols=135 Identities=12% Similarity=0.138 Sum_probs=85.2
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhCC-CCEEEEEcCCCCCCCCCCCChhHH--HHhcCCceee-cccc-h-hhhhc
Q 012652 274 KSVIYVAFGSHTVLDHNQFQELALGLEICN-RPFLWVVRPDITTDANDVYPRGFQ--ERVATRGQMI-GWAP-Q-QRVLS 347 (459)
Q Consensus 274 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~nv~i~-~~vp-q-~~iL~ 347 (459)
..++++| +.+.+..+....+.++ .+|-+.....+ .+.+. ++. +|+... ++.+ + .+++.
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--------s~kL~~L~~y-~nvvly~~~~~~~l~~ly~ 346 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--------SSKLMSLDKY-DNVKLYPNITTQKIQELYQ 346 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--------cHHHHHHHhc-CCcEEECCcChHHHHHHHH
Confidence 4477776 3566666766666554 45544333321 12221 233 677766 6677 3 37999
Q ss_pred CCCccceeeccC--chhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHH-
Q 012652 348 HPSIACFLSHCG--WNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQN- 424 (459)
Q Consensus 348 ~~~~~~~I~HgG--~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~- 424 (459)
.|++-+-|+||+ ..++.||+.+|+|++..=. ...-..+.. . |-.. ..-+.+++.++|.++|.+++
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~----t~~~~~~i~--~-g~l~-----~~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEYNLLILGFEE----TAHNRDFIA--S-ENIF-----EHNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHcCCcEEEEec----ccCCccccc--C-Ccee-----cCCCHHHHHHHHHHHhcCHHH
Confidence 999988999987 5789999999999998832 211111211 1 4434 33468999999999999984
Q ss_pred HHHHHHHHHHHH
Q 012652 425 FKARALELKEIT 436 (459)
Q Consensus 425 ~~~~a~~l~~~~ 436 (459)
++++..+-++.+
T Consensus 415 ~~~~~~~q~~~a 426 (438)
T TIGR02919 415 FRELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHHHh
Confidence 555555444433
No 156
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.71 E-value=1.3 Score=37.56 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=59.9
Q ss_pred EcCCCccCHHHHHHHHHHH-Hh-CCCEEEEEeCCcchHH--HHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHH
Q 012652 9 FSTPAQGHVIPLLEFSQCL-AK-HGFRVTFVNSEYNHKR--VMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEK 84 (459)
Q Consensus 9 ~~~~~~gH~~p~~~La~~L-~~-rGh~Vt~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (459)
+..++.||+.-++.|.+.+ .+ ..++..+++..+..+. +++..... ....++..++....... .....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~r~r~v~q------~~~~~ 73 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIPRAREVGQ------SYLTS 73 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccceEEEech------hhHhh
Confidence 3447889999999999999 33 4577777776544332 22211100 00113333332211111 11111
Q ss_pred HHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHc------CCceEEEeC
Q 012652 85 VLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKM------KLRRAVIWT 136 (459)
Q Consensus 85 ~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~------giP~i~~~~ 136 (459)
........+ ..+..+.. .+||+||+..-.. ....+|..+ |.+.|.+-.
T Consensus 74 ~~~~l~~~~-~~~~il~r---~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 74 IFTTLRAFL-QSLRILRR---ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHHHH-HHHHHHHH---hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 111111111 12222232 6899999997765 456778888 999997643
No 157
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.28 E-value=8.1 Score=35.99 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=57.8
Q ss_pred CCceeecccch---hhhhcCCCccceeec---cCch-hHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCC
Q 012652 332 TRGQMIGWAPQ---QRVLSHPSIACFLSH---CGWN-STMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDES 404 (459)
Q Consensus 332 ~nv~i~~~vpq---~~iL~~~~~~~~I~H---gG~~-s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 404 (459)
+++...+++++ ..++..+++ ++.- .|.| ++.||+++|+|+|.. +.......+.+ -+.|. +.
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~-~~~g~-~~---- 324 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVED-GETGL-LV---- 324 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcC-CCceE-ec----
Confidence 66777888883 347777776 6655 3543 469999999999777 34433334433 12466 32
Q ss_pred CcccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 405 GIITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
...+.+.+.+++..++++.+.++...+
T Consensus 325 ~~~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 325 PPGDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 222789999999999988854444443
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=92.01 E-value=1.5 Score=34.69 Aligned_cols=105 Identities=12% Similarity=0.237 Sum_probs=61.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEK 84 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (459)
||++.+.++..|.....-++..|.++|++|.++...-..+.+.+.... .+.++..+.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-----~~pdvV~iS~~~~-------------- 61 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-----EDADAIGLSGLLT-------------- 61 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEecccc--------------
Confidence 588999999999999999999999999999888754333222222110 1333333321111
Q ss_pred HHHhccHHHHHHHHHHhCCCCC-CccEEEeCCCcchHHHHHHHcCCceE
Q 012652 85 VLQVMPGKLEELIEEINGRDDE-KIDCFISDGFMGWSMEVAEKMKLRRA 132 (459)
Q Consensus 85 ~~~~~~~~~~~l~~~l~~~~~~-~pDlvi~D~~~~~~~~~A~~~giP~i 132 (459)
.....+.++++.+++.. . ++-+++...........++..|+=.+
T Consensus 62 ---~~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~~~~~~~~G~D~~ 106 (119)
T cd02067 62 ---THMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRDFKFLKEIGVDAY 106 (119)
T ss_pred ---ccHHHHHHHHHHHHHcC-CCCCeEEEECCCCChhHHHHHHcCCeEE
Confidence 11233455555665522 2 34456666544433456788887444
No 159
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.34 E-value=3.4 Score=37.49 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCC-CCCCCCCCChHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDG-MEPWEERTDPGKL 81 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~ 81 (459)
+||||+.---+. |.--+..|+++|.+.| +|+++.+....+...... .....+++..+... -............
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~~~y~v~GTPaD 78 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM----TLGVPLRIKEYQKNNRFFGYTVSGTPVD 78 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc----cCCCCeEEEEEccCCCceEEEEcCcHHH
Confidence 678887663333 2245778899998888 799998877655443221 12234555544311 0000000111111
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCC----------Ccc---hHHHHHHHcCCceEEEeC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDG----------FMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~----------~~~---~~~~~A~~~giP~i~~~~ 136 (459)
++.--+..+.. .+||+||+.. +++ .++.-|..+|||.|+++.
T Consensus 79 ----------CV~lal~~~~~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 ----------CIKVALSHILP---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred ----------HHHHHHHhhcC---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 12222233333 5799999643 333 345556778999999875
No 160
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.76 E-value=12 Score=33.70 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcC-Ccee-----ecccchhhhhcCCCccceeeccC-chhHHHhh
Q 012652 295 LALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVAT-RGQM-----IGWAPQQRVLSHPSIACFLSHCG-WNSTMEGV 367 (459)
Q Consensus 295 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-nv~i-----~~~vpq~~iL~~~~~~~~I~HgG-~~s~~eal 367 (459)
+.+.+++.+..|+++.+.. .......-+.++++. .+.+ .++=|+.++|..+|- +|.-.- .|-+.||+
T Consensus 189 l~k~l~~~g~~~lisfSRR----Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sEAa 262 (329)
T COG3660 189 LVKILENQGGSFLISFSRR----TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSEAA 262 (329)
T ss_pred HHHHHHhCCceEEEEeecC----CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHHHh
Confidence 5556677888888888654 111111111111111 1111 245689999999887 666555 57778999
Q ss_pred hcCCceecc
Q 012652 368 SNGIPFLCW 376 (459)
Q Consensus 368 ~~gvP~v~~ 376 (459)
+.|+|+.++
T Consensus 263 sTgkPv~~~ 271 (329)
T COG3660 263 STGKPVFIL 271 (329)
T ss_pred ccCCCeEEE
Confidence 999999665
No 161
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=90.61 E-value=2.8 Score=31.17 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHHH
Q 012652 20 LLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIEE 99 (459)
Q Consensus 20 ~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (459)
++.+++.|.+.|++|. + ++...+.+++. |+.+.........+ . .++++.
T Consensus 2 ~~~~~~~l~~lG~~i~-A-T~gTa~~L~~~---------Gi~~~~~~~ki~~~-----------------~---~~i~~~ 50 (90)
T smart00851 2 LVELAKRLAELGFELV-A-TGGTAKFLREA---------GLPVKTLHPKVHGG-----------------I---LAILDL 50 (90)
T ss_pred HHHHHHHHHHCCCEEE-E-ccHHHHHHHHC---------CCcceeccCCCCCC-----------------C---HHHHHH
Confidence 4688999999999983 4 44567777765 56543111111100 0 135555
Q ss_pred HhCCCCCCccEEEeCCCc---------chHHHHHHHcCCceEE
Q 012652 100 INGRDDEKIDCFISDGFM---------GWSMEVAEKMKLRRAV 133 (459)
Q Consensus 100 l~~~~~~~pDlvi~D~~~---------~~~~~~A~~~giP~i~ 133 (459)
++. .++|+||..... .....+|...+||+++
T Consensus 51 i~~---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 51 IKN---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred hcC---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 555 899999985431 1345678889999863
No 162
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.40 E-value=4.7 Score=34.74 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC---C---cchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCC
Q 012652 2 SSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS---E---YNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEER 75 (459)
Q Consensus 2 ~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~---~---~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 75 (459)
++-.|.+++..+.|=....+.+|-+.+.+|++|.++=. . .....+++. +++.+.....++....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l--------~~v~~~~~g~~~~~~~-- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG--------GGVEFHVMGTGFTWET-- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC--------CCcEEEECCCCCcccC--
Confidence 35678999999999999999999999999999999842 1 111222221 3788877665433221
Q ss_pred CChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCc
Q 012652 76 TDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM 117 (459)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~ 117 (459)
.+..+.. ......++...+.+.+ .++|+||.|-..
T Consensus 91 ~~~~e~~----~~~~~~~~~a~~~l~~---~~ydlvVLDEi~ 125 (191)
T PRK05986 91 QDRERDI----AAAREGWEEAKRMLAD---ESYDLVVLDELT 125 (191)
T ss_pred CCcHHHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhh
Confidence 1222211 2233445555555554 899999999754
No 163
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=90.19 E-value=1.9 Score=39.06 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCeEEEEEeCCc---ccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcC----Cce-eecc--cch
Q 012652 273 PKSVIYVAFGSH---TVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVAT----RGQ-MIGW--APQ 342 (459)
Q Consensus 273 ~~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----nv~-i~~~--vpq 342 (459)
+++.|.+..|+. -.++.+.+.++++.+.+.++++++..+.. + . .....+...+ ++. +.+- +.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~----~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE----E--Q-EKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH----H--H-HHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch----H--H-HHHHHHHHHHhcccceEeecCCCCHHH
Confidence 456888888875 34678889999999987776666555433 0 0 0111112222 222 2222 233
Q ss_pred -hhhhcCCCccceeeccCchhHHHhhhcCCceecc
Q 012652 343 -QRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCW 376 (459)
Q Consensus 343 -~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~ 376 (459)
..++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 369999887 8887 567888899999999988
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=89.46 E-value=4.1 Score=43.52 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=64.4
Q ss_pred eecccchhh---hhcCCCccceeec---cCc-hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCccc
Q 012652 336 MIGWAPQQR---VLSHPSIACFLSH---CGW-NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIIT 408 (459)
Q Consensus 336 i~~~vpq~~---iL~~~~~~~~I~H---gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~ 408 (459)
+.+++++.+ ++..+|+ |+.- -|. .++.||+++|+|-...|+..+--.-+ .+ +.-|+.++ ..+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~---~~-l~~~llv~-----P~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA---AE-LAEALLVN-----PND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchh---HH-hCcCeEEC-----CCC
Confidence 346788764 8888888 6653 254 57779999977521111111111111 12 23366664 357
Q ss_pred HHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 409 GEEISNKLVQVLGDQ--NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 409 ~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
.++++++|.++|..+ +-+++.+++.+.+++ .+...-.+++++.+.
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~ 461 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELR 461 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 999999999999854 455555555555443 566677777776654
No 165
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=89.45 E-value=0.96 Score=43.86 Aligned_cols=112 Identities=10% Similarity=0.153 Sum_probs=68.8
Q ss_pred cCCceee-cccchhhhhcCCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhh----hceeeeeeeeecCCCC
Q 012652 331 ATRGQMI-GWAPQQRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYI----CDIWKVGLKLDKDESG 405 (459)
Q Consensus 331 ~~nv~i~-~~vpq~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv----~~~~G~G~~~~~~~~~ 405 (459)
.+++... +..+-.++|..+|+ +||=- ...+.|.+..++|++......|.+...+-+ ++ ...|..+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~------ 320 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIV------ 320 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EE------
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCcee------
Confidence 3556554 44567799999999 99986 457889999999999887776665333211 11 1333333
Q ss_pred cccHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 012652 406 IITGEEISNKLVQVLGDQ-NFKARALELKEITMSSVREGGSSYKTFQNFL 454 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (459)
-+.++|.++|..++.++ .++++.++..+.+-. ..+|.++.+.++.++
T Consensus 321 -~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 321 -YNFEELIEAIENIIENPDEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp -SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred -CCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 36899999999998776 456667777777755 345667666665543
No 166
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=89.00 E-value=1.1 Score=42.04 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=34.7
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 4 PHILVFS-TPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 4 ~~il~~~-~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
||++|+. -++-|=..-..++|-.++++|++|.+++.+..+..-.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHH
Confidence 4677666 4566999999999999999999999999988776543
No 167
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=88.79 E-value=7.1 Score=35.38 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=59.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC-CCCC-CCCCCCChHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP-DGME-PWEERTDPGKL 81 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~-~~~~-~~~~~~~~~~~ 81 (459)
||||+.---+. |.--+..|+++|++ +|+|+++.+...++...... .....++...+. ++.. .....+....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~si----t~~~pl~~~~~~~~~~~~~~~~v~GTPa- 73 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSI----TIYEPIIIKEVKLEGINSKAYSISGTPA- 73 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccc----cCCCCeEEEeeccCCCCccEEEECCcHH-
Confidence 46666653332 22337888999965 68999999877765442221 112244444432 1000 0000001111
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeC----------CCcc---hHHHHHHHcCCceEEEeC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISD----------GFMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D----------~~~~---~~~~~A~~~giP~i~~~~ 136 (459)
.++.--+..+.. .+||+||+. .+++ .++.-|..+|||.++++.
T Consensus 74 ---------DcV~lal~~l~~---~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 74 ---------DCVRVALDKLVP---DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred ---------HHHHHHHHHhcC---CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 112222223323 689999964 3333 345556779999999875
No 168
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=88.64 E-value=2.5 Score=36.72 Aligned_cols=117 Identities=18% Similarity=0.097 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHhhhhccCCCCCCeEEEecCCCCCCCCC--CCChHHHHHHHHHhccHH
Q 012652 16 HVIPLLEFSQCLAKHGFRVTFVNSEYNHK-RVMKSLEGKNYLGEQIRLVSIPDGMEPWEE--RTDPGKLIEKVLQVMPGK 92 (459)
Q Consensus 16 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 92 (459)
++.-...+.+.+.++|-+|.|+++..... .+++.-.. .+..+ +...+-.+.. +.........+...-...
T Consensus 41 ~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~-----~~~~~--i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~ 113 (193)
T cd01425 41 KLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAER-----TGSFY--VNGRWLGGTLTNWKTIRKSIKRLKKLEKEK 113 (193)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH-----cCCee--ecCeecCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 34455666677778899999999875443 33332110 11111 1111222211 111111111111111122
Q ss_pred HHHHHHHHhCCCCCCccEEEe-CCCcc-hHHHHHHHcCCceEEEeCcchh
Q 012652 93 LEELIEEINGRDDEKIDCFIS-DGFMG-WSMEVAEKMKLRRAVIWTSCAA 140 (459)
Q Consensus 93 ~~~l~~~l~~~~~~~pDlvi~-D~~~~-~~~~~A~~~giP~i~~~~~~~~ 140 (459)
++..+..++... ..||+||. |+..- .+..=|.++|||++.+..+...
T Consensus 114 ~~k~~~g~~~~~-~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~~ 162 (193)
T cd01425 114 LEKNLGGIKDMF-RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCD 162 (193)
T ss_pred HHHhcccccccc-cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCC
Confidence 333333333322 78999865 44322 5677799999999999877653
No 169
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=88.53 E-value=6.9 Score=35.65 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=59.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCC-CCCCCCCCCChHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPD-GMEPWEERTDPGKLI 82 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~ 82 (459)
||||+.---+. |.--+..|++.|...| +|+++.+...++...... .....++...+.. +. .....+.....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ai----T~~~pl~~~~~~~~~~-~~y~v~GTPaD- 72 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGI----TLHKPLRMYEVDLCGF-KVYATSGTPSD- 72 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccc----cCCCCcEEEEeccCCc-ceEEeCCCHHH-
Confidence 35666553333 4456788999998887 799998877665543221 1122444444331 11 00000111111
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEe----------C-CCcc---hHHHHHHHcCCceEEEeC
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFIS----------D-GFMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~----------D-~~~~---~~~~~A~~~giP~i~~~~ 136 (459)
++.-.+..+ . .+||+||+ | .+++ .++.-|..+|||.+.++.
T Consensus 73 ---------CV~lal~~l-~---~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 73 ---------TIYLATYGL-G---RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred ---------HHHHHHHhc-c---CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 111122223 2 68999996 3 3333 344556778999999875
No 170
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=88.53 E-value=2.3 Score=38.18 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=60.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIE 83 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (459)
||||+.---+ =|.--+..|++.|+ .+++|+++.+...++-+.... ..-..++...+.. ..
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl----Tl~~Plr~~~~~~---~~----------- 60 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSL----TLHEPLRVRQVDN---GA----------- 60 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc----ccccCceeeEecc---ce-----------
Confidence 3555543222 35555777888888 999999999988776653321 1112333332221 00
Q ss_pred HHHHhc-cHHHHHHHHHHhCCCCCCccEEEeCC----------Ccc---hHHHHHHHcCCceEEEeCc
Q 012652 84 KVLQVM-PGKLEELIEEINGRDDEKIDCFISDG----------FMG---WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 84 ~~~~~~-~~~~~~l~~~l~~~~~~~pDlvi~D~----------~~~---~~~~~A~~~giP~i~~~~~ 137 (459)
+...-. ..++.--+..+.++ .+||+||+.. .++ .++.=|..+|||.|+++..
T Consensus 61 ~av~GTPaDCV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 61 YAVNGTPADCVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred EEecCChHHHHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 000001 11222222333220 6699999643 233 3455567899999998754
No 171
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.30 E-value=2.8 Score=45.06 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=61.5
Q ss_pred hhhcCCCccceeec---cCch-hHHHhhhcCCc---eeccccccccchhhhhhhceee-eeeeeecCCCCcccHHHHHHH
Q 012652 344 RVLSHPSIACFLSH---CGWN-STMEGVSNGIP---FLCWPYFVDQFLNESYICDIWK-VGLKLDKDESGIITGEEISNK 415 (459)
Q Consensus 344 ~iL~~~~~~~~I~H---gG~~-s~~eal~~gvP---~v~~P~~~DQ~~na~rv~~~~G-~G~~~~~~~~~~~~~~~l~~~ 415 (459)
+++..+|+ |+.- -|+| +++|++++|+| +++++ |--..+. . +| -|+.++ ..+.++++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~---~-l~~~allVn-----P~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQ---S-LGAGALLVN-----PWNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchh---h-hcCCeEEEC-----CCCHHHHHHH
Confidence 58899998 6654 3765 66699999999 33333 2212222 1 33 467774 4589999999
Q ss_pred HHHHhC-CH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 416 LVQVLG-DQ-NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 416 i~~ll~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
|.++|. ++ +-+++.+++.+..++ .+...-.++|++.+.
T Consensus 437 I~~aL~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 437 IKEALNMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELN 476 (797)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHH
Confidence 999998 44 344455555555554 456666677766553
No 172
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=88.28 E-value=0.93 Score=34.20 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHHH
Q 012652 20 LLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIEE 99 (459)
Q Consensus 20 ~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (459)
++.+|+.|.+.|+++ +.+......+++. ++.+..+.......+... .+. ++.+.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~------------g~~---~i~~~ 55 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKIGEGESPD------------GRV---QIMDL 55 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEHSTG-GGT------------HCH---HHHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeecccCccCC------------chh---HHHHH
Confidence 478999999999665 5566778888876 777555432221110000 000 44455
Q ss_pred HhCCCCCCccEEEeCCCcc---------hHHHHHHHcCCceEE
Q 012652 100 INGRDDEKIDCFISDGFMG---------WSMEVAEKMKLRRAV 133 (459)
Q Consensus 100 l~~~~~~~pDlvi~D~~~~---------~~~~~A~~~giP~i~ 133 (459)
+++ .+.|+||..+... ....+|..++||+++
T Consensus 56 i~~---~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 56 IKN---GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHT---TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHc---CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 555 9999999775433 125678889999863
No 173
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.48 E-value=2.4 Score=35.16 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDG 68 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~ 68 (459)
.+||++...|+.|-..-...+++.|.++|+.|-=+-.+...+--.. .||+..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR---------~GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR---------IGFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE---------eeeEEEEccCC
Confidence 6799999999999999999999999999999876555444322212 37888887643
No 174
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.41 E-value=8.7 Score=34.78 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=59.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCC--CCCCCCCCCChHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPD--GMEPWEERTDPGKL 81 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 81 (459)
||||+.---+. |.--+..|+++|++ +|+|+++.+...++...... .....++...+.. +. ..........
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~~~~-~~y~v~GTPa- 72 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAI----TIRVPLWAKKVFISERF-VAYATTGTPA- 72 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccc----cCCCCceEEEeecCCCc-cEEEECCcHH-
Confidence 46666653333 33457788899964 68999999977765543321 1112344433321 11 0000011111
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeC----------CCcc---hHHHHHHHcCCceEEEeC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISD----------GFMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D----------~~~~---~~~~~A~~~giP~i~~~~ 136 (459)
.++.--+..+.. .+||+||+. .+++ .++.-|...|||.+.++.
T Consensus 73 ---------DcV~lal~~~~~---~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 73 ---------DCVKLGYDVIMD---KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred ---------HHHHHHHHhhcc---CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 122222233323 679999964 3344 345556778999999875
No 175
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.37 E-value=3.3 Score=36.25 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN-HKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (459)
+.||++.+.++-.|-....-++.-|.++|++|+++...-. .+.++.... .+.++..++-.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~------~~~d~v~lS~~~~----------- 144 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE------HKPDILGLSALMT----------- 144 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH------cCCCEEEEecccc-----------
Confidence 4689999999999999999999999999999998876533 333332211 1444444332111
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCC--CccEEEeCCCcchHHHHHHHcCCceEE
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDE--KIDCFISDGFMGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~--~pDlvi~D~~~~~~~~~A~~~giP~i~ 133 (459)
.....++++++.+++.. . ++.+++..... ....++.+|.=...
T Consensus 145 ------~~~~~~~~~i~~lr~~~-~~~~~~i~vGG~~~--~~~~~~~~GaD~~~ 189 (201)
T cd02070 145 ------TTMGGMKEVIEALKEAG-LRDKVKVMVGGAPV--NQEFADEIGADGYA 189 (201)
T ss_pred ------ccHHHHHHHHHHHHHCC-CCcCCeEEEECCcC--CHHHHHHcCCcEEE
Confidence 11233566666666632 2 34455555432 34578888765443
No 176
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=87.28 E-value=27 Score=33.00 Aligned_cols=268 Identities=12% Similarity=0.015 Sum_probs=130.8
Q ss_pred CCccEEEeCCCcchH-HHHHHHcCCceEEEeCcchhHHHHHhhcccccccCCCCCCCCccccccccccCCCCCCCccccc
Q 012652 106 EKIDCFISDGFMGWS-MEVAEKMKLRRAVIWTSCAASVASIFCIPKLIDDGIIDSNGTPIRKQMIQLAPNMLEMNTEEFF 184 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~-~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (459)
..||+.|-...++.. ..+++..++|++++.+.|..+............+
T Consensus 149 ~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s------------------------------ 198 (465)
T KOG1387|consen 149 FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKS------------------------------ 198 (465)
T ss_pred CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhhc------------------------------
Confidence 589999877776644 4445578999999988877655543321111110
Q ss_pred ccccCCcccccchhhhHHHHHHHHHHHhh-ccCCEEEEcCCccCchhhhccCC-ccccccccccCCCCCCCCCCCCCCCc
Q 012652 185 WTRLGDITTQKMTSQKIIFDLSIRTIKAM-KVADFQFCNSTYELEPGAFNMIP-ELLPVGPLLASNRLGNSAGHFWPEDS 262 (459)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~p-~v~~vGp~~~~~~~~~~~~~~~~~~~ 262 (459)
. +.... + -.+++.++..+... ..++.++.|+.+.-..-..-|.. .+.-|-|-+..+
T Consensus 199 -~-~l~~~-K-----laY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e-------------- 256 (465)
T KOG1387|consen 199 -G-ILVWG-K-----LAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTE-------------- 256 (465)
T ss_pred -c-hhhhH-H-----HHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEcCCCCHH--------------
Confidence 0 00001 1 34566677766664 56789999998754433222222 222233322111
Q ss_pred hHHHHhccCCCCeEEEEEeCCcc-cCCHHHHHHHHHHHhhCC-------CCEEEEEcCCCCCCCCC----CCChhHH-HH
Q 012652 263 TCLKWLDQQQPKSVIYVAFGSHT-VLDHNQFQELALGLEICN-------RPFLWVVRPDITTDAND----VYPRGFQ-ER 329 (459)
Q Consensus 263 ~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~-------~~~i~~~~~~~~~~~~~----~~~~~~~-~~ 329 (459)
++.+-....+.+-+..+++|-.- ..+.+.++-.+--+.+.+ .+.+++-+-. .++.. .+.+.-+ -+
T Consensus 257 ~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScR--neeD~ervk~Lkd~a~~L~ 334 (465)
T KOG1387|consen 257 DLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCR--NEEDEERVKSLKDLAEELK 334 (465)
T ss_pred HHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccC--ChhhHHHHHHHHHHHHhcC
Confidence 11121222234567788887652 112222332222222221 2333332211 11110 0111000 12
Q ss_pred hcCCceeecccchhh---hhcCCCccceeeccCch-----hHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeec
Q 012652 330 VATRGQMIGWAPQQR---VLSHPSIACFLSHCGWN-----STMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDK 401 (459)
Q Consensus 330 ~~~nv~i~~~vpq~~---iL~~~~~~~~I~HgG~~-----s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~ 401 (459)
++++|....-+|+.+ +|..|.+ =-|+=|| ++.|.+++|.=+|+=-..+--. ..|..+ .|..-.
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~i---Gvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~l---DIV~~~--~G~~tG- 405 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKATI---GVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLL---DIVTPW--DGETTG- 405 (465)
T ss_pred CccceEEEecCCHHHHHHHhcccee---ehhhhhhhhcchhHHHHHhcCceEEEeCCCCCce---eeeecc--CCccce-
Confidence 568888888899886 5555554 1233333 7889999996444321111000 011111 111111
Q ss_pred CCCCcccHHHHHHHHHHHhCC-H----HHHHHHHHHHHHHHh
Q 012652 402 DESGIITGEEISNKLVQVLGD-Q----NFKARALELKEITMS 438 (459)
Q Consensus 402 ~~~~~~~~~~l~~~i~~ll~~-~----~~~~~a~~l~~~~~~ 438 (459)
.-..|.++-+++|-+++.+ + .+|++|+.--+++.+
T Consensus 406 --Fla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 406 --FLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred --eecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 1335678888888888754 2 467777666666654
No 177
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=87.00 E-value=28 Score=33.03 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=35.1
Q ss_pred hcCCceeecccchh---hhhcCCCccceeeccCc----hhHHHhhhcCCceecc
Q 012652 330 VATRGQMIGWAPQQ---RVLSHPSIACFLSHCGW----NSTMEGVSNGIPFLCW 376 (459)
Q Consensus 330 ~~~nv~i~~~vpq~---~iL~~~~~~~~I~HgG~----~s~~eal~~gvP~v~~ 376 (459)
..+.+.+.+-+|++ ++|.+-++ |++-.=. -.+.||..+|.|+|..
T Consensus 250 l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 250 LQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred ccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 45888899999976 47888888 7765432 3678999999999875
No 178
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=86.95 E-value=4.8 Score=36.64 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=55.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK-RVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
|||+++.. .| . ...|+++|.++||+|+..+...... .+.+.+ ...+.. ..
T Consensus 1 m~ILvlGG--T~--e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g--------~~~v~~--g~-------------- 51 (256)
T TIGR00715 1 MTVLLMGG--TV--D-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ--------ALTVHT--GA-------------- 51 (256)
T ss_pred CeEEEEec--hH--H-HHHHHHHHHhCCCeEEEEEccCCccccccccC--------CceEEE--CC--------------
Confidence 45666543 33 2 6789999999999999988765433 222220 111110 00
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcch------HHHHHHHcCCceEEEe
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGW------SMEVAEKMKLRRAVIW 135 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~------~~~~A~~~giP~i~~~ 135 (459)
+ -...+.++++. .++|+||--.+.++ +..+++.+|||++.+.
T Consensus 52 --l---~~~~l~~~l~~------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 52 --L---DPQELREFLKR------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred --C---CHHHHHHHHHh------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0 01224455555 88998875544332 5678899999999853
No 179
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.48 E-value=9.5 Score=36.00 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=35.6
Q ss_pred CCEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 3 SPHILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 3 ~~~il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
++||+|++.= +-|=..-..++|-.|++.|++|.+++.+..+..-.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d 46 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGD 46 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHh
Confidence 3678877754 55998889999999999999999998877665543
No 180
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=86.48 E-value=8.9 Score=29.66 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=57.4
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHH
Q 012652 15 GHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLE 94 (459)
Q Consensus 15 gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (459)
++-.-+..+++.|.+.|+++. +++...+.+++. ++.+..+.... ...+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~~------------------~~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKVS------------------EGRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeecC------------------CCchhHH
Confidence 456678899999999999983 455677777775 67655443211 0223345
Q ss_pred HHHHHHhCCCCCCccEEEeCCC-------cchHHHHHHHcCCceEE
Q 012652 95 ELIEEINGRDDEKIDCFISDGF-------MGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 95 ~l~~~l~~~~~~~pDlvi~D~~-------~~~~~~~A~~~giP~i~ 133 (459)
++++. .++|+||..+. .......|-.+|||+++
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 55555 89999998432 23567778999999995
No 181
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=86.40 E-value=3.5 Score=36.64 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=27.4
Q ss_pred CCccEE-EeCCCcc-hHHHHHHHcCCceEEEeCcchhH
Q 012652 106 EKIDCF-ISDGFMG-WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 106 ~~pDlv-i~D~~~~-~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
.-||++ |.|+..- -+..=|.++|||+|.+..+.+-+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 449998 5666544 56677999999999998877643
No 182
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.39 E-value=1.4 Score=34.78 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=28.1
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 4 PHILVFSTPAQG---HVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 4 ~~il~~~~~~~g---H~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|||+|+.-|-.+ .-..+++|+.+-.+|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 588888876554 456889999999999999999998664
No 183
>PRK12342 hypothetical protein; Provisional
Probab=86.08 E-value=9.7 Score=34.59 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCCccEEEeCCCcc------hHHHHHHHcCCceEEEeCc
Q 012652 92 KLEELIEEINGRDDEKIDCFISDGFMG------WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 92 ~~~~l~~~l~~~~~~~pDlvi~D~~~~------~~~~~A~~~giP~i~~~~~ 137 (459)
.+...++. .+||+|++..... .+..+|+.+|+|+++....
T Consensus 100 ~La~~i~~------~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEK------IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHH------hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 34445555 5799999876554 3789999999999986654
No 184
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.98 E-value=1.3 Score=35.65 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
+||++...++.+=+. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 477877777665555 999999999999999999998888777665
No 185
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=85.07 E-value=8.7 Score=30.08 Aligned_cols=87 Identities=21% Similarity=0.160 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHH
Q 012652 16 HVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEE 95 (459)
Q Consensus 16 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (459)
+-.-+..+|+.|.+.|++|. +++...+.+.+. ++.+..+......+. .. .+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~~~~~~-~~-------------~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWPSEEPQ-ND-------------KPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeeccCCCC-CC-------------chhHHH
Confidence 45567899999999999883 455777777765 565554422111000 00 133445
Q ss_pred HHHHHhCCCCCCccEEEeCCC---------cchHHHHHHHcCCceEE
Q 012652 96 LIEEINGRDDEKIDCFISDGF---------MGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 96 l~~~l~~~~~~~pDlvi~D~~---------~~~~~~~A~~~giP~i~ 133 (459)
+++. .++|+||.-+. .......|-.+|||+++
T Consensus 66 ~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 5555 89999998543 13456778999999974
No 186
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=84.74 E-value=8.7 Score=31.64 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=72.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCcccee
Q 012652 276 VIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFL 355 (459)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I 355 (459)
.|.+-+||.. +....+++...|++.+..+-..+.. ..-.|+.+. .++...+- ..+++ ||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~s------aHR~p~~l~----------~~~~~~~~-~~~~v--iI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVAS------AHRTPERLL----------EFVKEYEA-RGADV--II 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--------TTTSHHHHH----------HHHHHTTT-TTESE--EE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEe------ccCCHHHHH----------HHHHHhcc-CCCEE--EE
Confidence 4666677654 7778888999998888665444432 233344422 22221111 22344 88
Q ss_pred eccCc----hhHHHhhhcCCceeccccccccchhh----hhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHH
Q 012652 356 SHCGW----NSTMEGVSNGIPFLCWPYFVDQFLNE----SYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKA 427 (459)
Q Consensus 356 ~HgG~----~s~~eal~~gvP~v~~P~~~DQ~~na----~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 427 (459)
.=.|. .++..++. -+|+|.+|....+.... ..+.---|+++..-.- .+..++..+.-.|-. +.|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa-~~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILA-LKDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHH-TT-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHh-cCCHHHHH
Confidence 87775 34555554 89999999876644211 2222101555433210 122333333333333 35789999
Q ss_pred HHHHHHHHHHhh
Q 012652 428 RALELKEITMSS 439 (459)
Q Consensus 428 ~a~~l~~~~~~~ 439 (459)
+.+..++..++.
T Consensus 138 kl~~~~~~~~~~ 149 (150)
T PF00731_consen 138 KLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999999888764
No 187
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=84.67 E-value=1.8 Score=37.43 Aligned_cols=45 Identities=16% Similarity=-0.057 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 2 SSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 2 ~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
+..||++.-.++.|=+.-...++++|.++||+|.++.++...+.+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 356777666554444443799999999999999999987766554
No 188
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.07 E-value=6.6 Score=35.53 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=60.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIE 83 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (459)
||||+.---+. |.--+..|+++|.+. |+|+++.+...++...... .....+++..+..+ ........
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~---~~~v~GTP---- 67 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL----TLTRPLRVEKVDNG---FYAVDGTP---- 67 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc----cCCCCeEEEEecCC---eEEECCcH----
Confidence 45666553332 344578889999988 7999999977665543221 11224555443211 00000000
Q ss_pred HHHHhccHHHHHHHHHHhCCCCCCccEEEeCC----------Ccc---hHHHHHHHcCCceEEEeC
Q 012652 84 KVLQVMPGKLEELIEEINGRDDEKIDCFISDG----------FMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~----------~~~---~~~~~A~~~giP~i~~~~ 136 (459)
-.++.--+..+.. .+||+||+.. +++ .++.-|..+|||.+.++.
T Consensus 68 ------aDcV~~gl~~l~~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 68 ------TDCVHLALNGLLD---PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred ------HHHHHHHHHhhcc---CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1122223333333 5899999643 333 345556779999999875
No 189
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.96 E-value=6.4 Score=36.20 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhC-CCCEEEEEcCCCCCCCCCCCChhHHHHh--cCC-ceeecccchhhhhcCCCccceeeccCchhHHHh
Q 012652 291 QFQELALGLEIC-NRPFLWVVRPDITTDANDVYPRGFQERV--ATR-GQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEG 366 (459)
Q Consensus 291 ~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~n-v~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~ea 366 (459)
..+.+.+..+.. +.+++++..+... ......+.+.. ..+ +.+.+-++-.+++.+++. +||-.+ ++-.||
T Consensus 142 ~~~~l~~~~~~~p~~~lvvK~HP~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEA 214 (269)
T PF05159_consen 142 FLDMLESFAKENPDAKLVVKPHPDER----GGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEA 214 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEECchhh----CCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHH
Confidence 334444444444 5666666655311 11111222222 133 334466777899999888 888854 466799
Q ss_pred hhcCCceeccc
Q 012652 367 VSNGIPFLCWP 377 (459)
Q Consensus 367 l~~gvP~v~~P 377 (459)
+.+|+|++++.
T Consensus 215 ll~gkpVi~~G 225 (269)
T PF05159_consen 215 LLHGKPVIVFG 225 (269)
T ss_pred HHcCCceEEec
Confidence 99999999984
No 190
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.83 E-value=25 Score=33.29 Aligned_cols=82 Identities=10% Similarity=0.004 Sum_probs=61.5
Q ss_pred CCcee-ecccchh---hhhcCCCccceeec--cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 332 TRGQM-IGWAPQQ---RVLSHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 332 ~nv~i-~~~vpq~---~iL~~~~~~~~I~H--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
+|+.+ .+++|.. ++|..|++.-|.+. =|.|++.-.++.|+|+++. .+.---+-+.+ .|+-+... .+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~---~d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFY---GD 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEec---cc
Confidence 57765 4788865 59999999666654 4899999999999999887 33333444555 48877776 37
Q ss_pred cccHHHHHHHHHHHhC
Q 012652 406 IITGEEISNKLVQVLG 421 (459)
Q Consensus 406 ~~~~~~l~~~i~~ll~ 421 (459)
.++...|.++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8999999998887754
No 191
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=83.81 E-value=7.3 Score=35.17 Aligned_cols=113 Identities=20% Similarity=0.048 Sum_probs=60.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCC--CCCCCCCCCChHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPD--GMEPWEERTDPGKL 81 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 81 (459)
||||+.=--+ =|.--+..|+++|++.| +|+++.+...++...... .....+++..+.. +. ...........
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai----t~~~pl~~~~~~~~~~~-~~~~v~GTPaD 73 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL----TLFEPLRVGQVKVKNGA-HIYAVDGTPTD 73 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc----CCCCCeEEEEeccCCCc-cEEEEcCcHHH
Confidence 3566544222 23345778899999888 899999987765553321 2223455555431 11 00000010111
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCC----------Ccc---hHHHHHHHcCCceEEEeC
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDG----------FMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~----------~~~---~~~~~A~~~giP~i~~~~ 136 (459)
++.--+..+-. .+|||||+.. +++ .++.-|..+|||.+.++.
T Consensus 74 ----------cv~~gl~~l~~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 74 ----------CVILGINELMP---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred ----------HHHHHHHHhcc---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 12222223322 5799998643 333 345556778999999875
No 192
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.75 E-value=21 Score=30.23 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=59.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE---eCC---cchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCC
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFV---NSE---YNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTD 77 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~---~~~---~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (459)
--|.+++..+.|=..-.+.+|-+.+.+|++|.++ =.. .....+++. ++.+.....++.... .+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~---------~~~~~~~g~g~~~~~--~~ 74 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH---------GVEFQVMGTGFTWET--QN 74 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc---------CcEEEECCCCCeecC--CC
Confidence 3577888899999999999999999999999766 221 111222221 677777665543221 11
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCc
Q 012652 78 PGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM 117 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~ 117 (459)
..+.... ....++...+.+.+ .++|+||.|-..
T Consensus 75 ~~~~~~~----~~~~~~~a~~~l~~---~~~DlvVLDEi~ 107 (173)
T TIGR00708 75 READTAI----AKAAWQHAKEMLAD---PELDLVLLDELT 107 (173)
T ss_pred cHHHHHH----HHHHHHHHHHHHhc---CCCCEEEehhhH
Confidence 1121111 23344444444444 899999999754
No 193
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=83.52 E-value=7.1 Score=34.00 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
+.+|++.+.++..|-....-++.-|..+|++|++++..--.+.+.+... ..+.++..++-.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-----~~~pd~v~lS~~~~------------ 146 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-----KEKPLMLTGSALMT------------ 146 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-----HcCCCEEEEccccc------------
Confidence 4689999999999999999999999999999999987644333322211 12444444432211
Q ss_pred HHHHHhccHHHHHHHHHHhCCC-CCCccEEEeCCCcchHHHHHHHcCCce
Q 012652 83 EKVLQVMPGKLEELIEEINGRD-DEKIDCFISDGFMGWSMEVAEKMKLRR 131 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~-~~~pDlvi~D~~~~~~~~~A~~~giP~ 131 (459)
.....++++++.+++.. ..++-+++..... ...+|+.+|.=.
T Consensus 147 -----~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~ 189 (197)
T TIGR02370 147 -----TTMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADV 189 (197)
T ss_pred -----cCHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcE
Confidence 11233456666666632 1235566666443 345677777543
No 194
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=83.23 E-value=26 Score=29.30 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=59.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE---eCC-c--chHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCCh
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFV---NSE-Y--NHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDP 78 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~---~~~-~--~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (459)
-|.+++..+.|=....+.+|-+.+.+|++|.++ -.. . ....+++. +++.+.....+..... .+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l--------~~v~~~~~g~~~~~~~--~~~ 73 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL--------PNIEIHRMGRGFFWTT--END 73 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC--------CCcEEEECCCCCccCC--CCh
Confidence 467888889999999999999999999999994 332 1 11222222 3777777665432211 122
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc
Q 012652 79 GKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG 118 (459)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~ 118 (459)
.+.. ......++...+.++. .++|+||-|-...
T Consensus 74 ~~~~----~~a~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 74 EEDI----AAAAEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred HHHH----HHHHHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 2211 1223334444444444 8999999997543
No 195
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=82.84 E-value=12 Score=32.80 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=59.2
Q ss_pred CEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHhhhhccCCCCCCeEE--EecCCC-CCCC---
Q 012652 4 PHILVFSTP--AQGHVIPLLEFSQCLAKHGFRVTFVNSEY---NHKRVMKSLEGKNYLGEQIRL--VSIPDG-MEPW--- 72 (459)
Q Consensus 4 ~~il~~~~~--~~gH~~p~~~La~~L~~rGh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~~~~--~~i~~~-~~~~--- 72 (459)
.+|++++++ +-|-......|+-.|+.+|++|.++-.+- +-+.+-.. + ..+-| ..+-++ ....
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGl--E-----~RiVYd~vdVi~g~~~l~QAL 74 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGL--E-----NRIVYDLVDVIEGEATLNQAL 74 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcc--c-----ceeeeeehhhhcCccchhhHh
Confidence 567777765 45999999999999999999999997653 44444221 1 12222 111111 0000
Q ss_pred ---CCCCChH----HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCC
Q 012652 73 ---EERTDPG----KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGF 116 (459)
Q Consensus 73 ---~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~ 116 (459)
....++. ...+.=-......++.++++++. ..||.||+|.-
T Consensus 75 IkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~---~~fDyIi~DsP 122 (272)
T COG2894 75 IKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKA---MDFDYIIIDSP 122 (272)
T ss_pred hccccCCceEecccccccCcccCCHHHHHHHHHHHHh---cCCCEEEecCc
Confidence 0001110 00000011246678888999887 78999999964
No 196
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=82.71 E-value=16 Score=28.96 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=33.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
||++.+.++..|-....-++.-|...|++|.+....-
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 6888999999999999999999999999999998743
No 197
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=82.23 E-value=1.8 Score=42.92 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=44.5
Q ss_pred hHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHHHHHH
Q 012652 362 STMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKARALE 431 (459)
Q Consensus 362 s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 431 (459)
++.||+++|+|+++. ++-.=+..++. .--|...++ ..-....+++++.++..|++++.++.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 678999999999998 55555556665 355666653 222234799999999999988766543
No 198
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=82.13 E-value=44 Score=31.21 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCceee-cccch---hhhhcCCCccceeec--cCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCC
Q 012652 332 TRGQMI-GWAPQ---QRVLSHPSIACFLSH--CGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESG 405 (459)
Q Consensus 332 ~nv~i~-~~vpq---~~iL~~~~~~~~I~H--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~ 405 (459)
+|+.+. +++|. .++|..||+.-|+++ =|.|++.-.++.|||+++-- +-+.+.- +.+ .|+-+..+. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecC---C
Confidence 677764 77775 469999999777775 47899999999999999873 2233333 334 488776663 7
Q ss_pred cccHHHHHHHHHHH
Q 012652 406 IITGEEISNKLVQV 419 (459)
Q Consensus 406 ~~~~~~l~~~i~~l 419 (459)
.++...+.++=+++
T Consensus 278 ~L~~~~v~e~~rql 291 (322)
T PRK02797 278 DLDEDIVREAQRQL 291 (322)
T ss_pred cccHHHHHHHHHHH
Confidence 77877777764433
No 199
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=81.92 E-value=12 Score=34.67 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=65.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhc------cCCCCCCeEEEecCCCCCCCCCCCCh
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEG------KNYLGEQIRLVSIPDGMEPWEERTDP 78 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (459)
.|.|...|+.|--.-.-.|.++|.++||+|-++.-++...+--..... .....+++=+.+++ .+..+
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~-------srG~l 125 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP-------SRGTL 125 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC-------CCccc
Confidence 566889999999999999999999999999999865543221111000 00111233223322 11111
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEe
Q 012652 79 GKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~ 135 (459)
.. ......+.+..+.. .++|+||....-. .=..+++..++=.+...
T Consensus 126 GG--------lS~at~~~i~~ldA---aG~DvIIVETVGvGQsev~I~~~aDt~~~v~~ 173 (323)
T COG1703 126 GG--------LSRATREAIKLLDA---AGYDVIIVETVGVGQSEVDIANMADTFLVVMI 173 (323)
T ss_pred hh--------hhHHHHHHHHHHHh---cCCCEEEEEecCCCcchhHHhhhcceEEEEec
Confidence 11 12234445555555 8999999986644 23456666666555433
No 200
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=81.79 E-value=2.6 Score=35.68 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHH----HH-c-CCceEEEeCcc
Q 012652 90 PGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVA----EK-M-KLRRAVIWTSC 138 (459)
Q Consensus 90 ~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A----~~-~-giP~i~~~~~~ 138 (459)
.+.+.+++++ .+||+||+...+.....++ +. + ++|.+++.+-.
T Consensus 78 ~~~l~~~l~~------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 78 ARRLIRLLRE------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHHhh------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 3445555555 9999999997764333121 22 4 58888776653
No 201
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=81.35 E-value=11 Score=34.29 Aligned_cols=100 Identities=10% Similarity=-0.015 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhC---CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHH
Q 012652 18 IPLLEFSQCLAKH---GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLE 94 (459)
Q Consensus 18 ~p~~~La~~L~~r---Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (459)
--+..|++.|.+. |++|+++.+...++...... +....++...+.++. .........|-. -.+.
T Consensus 14 ~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai----T~~~pl~~~~~~~~~---yav~GTPaDCV~------lal~ 80 (261)
T PRK13931 14 PGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI----SYTHPMMIAELGPRR---FAAEGSPADCVL------AALY 80 (261)
T ss_pred HhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc----cCCCCeEEEEeCCCe---EEEcCchHHHHH------HHHH
Confidence 3456677777663 47999999977665543221 122345555543110 100111111111 1122
Q ss_pred HHHHHHhCCCCCCccEEEe----------CCCcc---hHHHHHHHcCCceEEEeC
Q 012652 95 ELIEEINGRDDEKIDCFIS----------DGFMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 95 ~l~~~l~~~~~~~pDlvi~----------D~~~~---~~~~~A~~~giP~i~~~~ 136 (459)
.++. . .+||+||+ |.+++ .++.-|..+|||.++++.
T Consensus 81 ~~~~---~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 81 DVMK---D---APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HhcC---C---CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 2222 1 57999996 34444 344556779999999875
No 202
>PRK06849 hypothetical protein; Provisional
Probab=81.25 E-value=8.7 Score=37.52 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=29.9
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 1 MS-SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 1 m~-~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|+ +++||+..... ...+.+|+.|.++||+|+++.....
T Consensus 1 ~~~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGARA----PAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCch
Confidence 55 78888885332 2589999999999999999987643
No 203
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=81.16 E-value=7.8 Score=36.49 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=27.2
Q ss_pred CCccEEE-eCCCcc-hHHHHHHHcCCceEEEeCcchhH
Q 012652 106 EKIDCFI-SDGFMG-WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 106 ~~pDlvi-~D~~~~-~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
..||+|| .|+..- .+..=|.++|||+|.+..+.+-+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp 188 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDP 188 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCc
Confidence 4799986 455433 67777999999999998876643
No 204
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=81.14 E-value=12 Score=36.87 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=22.8
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
.+||++|... -+..+|+++|||++.+.
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 7999999984 35677999999999854
No 205
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=81.04 E-value=2.1 Score=36.28 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=25.7
Q ss_pred CEEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 4 PHILVFSTPAQ-GHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 4 ~~il~~~~~~~-gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|||.+++..+. |+ .|+++...|||+||-++-...
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeChH
Confidence 57887764443 43 578999999999999987554
No 206
>PRK05973 replicative DNA helicase; Provisional
Probab=80.86 E-value=12 Score=33.52 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=36.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
+++...|+.|=..-.+.++.+-+++|+.|.|++.+...+.+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 5677788999999999999999889999999998776655543
No 207
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.05 E-value=2.8 Score=38.39 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=57.0
Q ss_pred CCceee-cccchhhhhcCCCccceeeccCchhHH-HhhhcCCceeccccccccchhhh--hhhceeeeeeeeecCCCCcc
Q 012652 332 TRGQMI-GWAPQQRVLSHPSIACFLSHCGWNSTM-EGVSNGIPFLCWPYFVDQFLNES--YICDIWKVGLKLDKDESGII 407 (459)
Q Consensus 332 ~nv~i~-~~vpq~~iL~~~~~~~~I~HgG~~s~~-eal~~gvP~v~~P~~~DQ~~na~--rv~~~~G~G~~~~~~~~~~~ 407 (459)
+|..+. .|-...++|.++++ .|--. ||.. +++-.|||+|.+|-.+-|+.-+- |=.+-+|+.+.+.. -
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~ 364 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----P 364 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----C
Confidence 455543 66666778888776 44433 3333 46778999999999998876543 22233577777752 1
Q ss_pred cHHHHHHHHHHHhCCHHHHHHHH
Q 012652 408 TGEEISNKLVQVLGDQNFKARAL 430 (459)
Q Consensus 408 ~~~~l~~~i~~ll~~~~~~~~a~ 430 (459)
.+..-..+..+++.|+++.+.++
T Consensus 365 ~aq~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 365 EAQAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred chhhHHHHHHHHhcChHHHHHHH
Confidence 22233333444999998777766
No 208
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=79.81 E-value=13 Score=33.93 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=31.7
Q ss_pred EE-EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 6 IL-VFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 6 il-~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
++ |..-++.|-..-...+|..++++|++|.++..+...
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 45 444667799999999999999999999999987654
No 209
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=79.18 E-value=5.1 Score=40.78 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=50.4
Q ss_pred chhhhhcCCCccceee---ccCc-hhHHHhhhcCCceecccccc-ccchhhhhhhceeeeeeeeecCC--CCcccHHHHH
Q 012652 341 PQQRVLSHPSIACFLS---HCGW-NSTMEGVSNGIPFLCWPYFV-DQFLNESYICDIWKVGLKLDKDE--SGIITGEEIS 413 (459)
Q Consensus 341 pq~~iL~~~~~~~~I~---HgG~-~s~~eal~~gvP~v~~P~~~-DQ~~na~rv~~~~G~G~~~~~~~--~~~~~~~~l~ 413 (459)
+..+++..|++ +|. +=|+ -++.||+++|+|+|+....+ ..... ..+......|+.+.... ...-+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 46678888888 665 3454 58899999999999986531 11111 11111002566665311 1234578889
Q ss_pred HHHHHHhCCHHHHHHH
Q 012652 414 NKLVQVLGDQNFKARA 429 (459)
Q Consensus 414 ~~i~~ll~~~~~~~~a 429 (459)
+++.++++. +.+++.
T Consensus 544 ~~m~~~~~~-~~r~~~ 558 (590)
T cd03793 544 QYMYEFCQL-SRRQRI 558 (590)
T ss_pred HHHHHHhCC-cHHHHH
Confidence 999998854 334433
No 210
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=78.70 E-value=78 Score=31.96 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=69.1
Q ss_pred eeecccchhh---hhcCCCccceee--ccCchhHH-HhhhcCC----ceeccccccccchhhhhhhceeeeeeeeecCCC
Q 012652 335 QMIGWAPQQR---VLSHPSIACFLS--HCGWNSTM-EGVSNGI----PFLCWPYFVDQFLNESYICDIWKVGLKLDKDES 404 (459)
Q Consensus 335 ~i~~~vpq~~---iL~~~~~~~~I~--HgG~~s~~-eal~~gv----P~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~ 404 (459)
.+.+.+|+.+ ++..+|+ ++|| .-|+|-+. |.++++. |+|+.-+. -|+ ++ +.-++.++
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVN---- 431 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTN---- 431 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEEC----
Confidence 4457788765 7788888 2333 35888655 9999988 66555222 111 33 44567774
Q ss_pred CcccHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 405 GIITGEEISNKLVQVLGDQ--NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 405 ~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
..+.++++++|.++|..+ +=+++.+++.+.+++ .....=.+.|++.+.
T Consensus 432 -P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 432 -PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVS 481 (487)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 468999999999999876 344555555555554 466666777777664
No 211
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=78.01 E-value=23 Score=34.99 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=23.0
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
.+||++|... .+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 7999999883 46778999999999754
No 212
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.99 E-value=9.4 Score=32.89 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=49.7
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHH-HHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHH
Q 012652 11 TPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKR-VMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQ 87 (459)
Q Consensus 11 ~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (459)
..+-|-+.-...|+++|.++ |+.|.+-+....... +.+... +.+...-+|-+
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D------------------- 82 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD------------------- 82 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S-------------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc-------------------
Confidence 34569999999999999987 899999887544333 333211 12222223311
Q ss_pred hccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeCc
Q 012652 88 VMPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 88 ~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~~ 137 (459)
....++.+++. .+||++|.-.... .....|++.|||++.++.-
T Consensus 83 -~~~~~~rfl~~------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 83 -FPWAVRRFLDH------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp -SHHHHHHHHHH------H--SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred -CHHHHHHHHHH------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 23456777888 8899987554444 4567788899999987643
No 213
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=77.48 E-value=2.5 Score=36.39 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCCc
Q 012652 2 SSPHILVFSTPAQGHVIP------------LLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 2 ~~~~il~~~~~~~gH~~p------------~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
+..|||+...++.-++.| ...||+++.++||+|+++..+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 345677777666655544 5789999999999999999874
No 214
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=77.32 E-value=9.5 Score=29.91 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=35.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
|+++.+.+..-|-.-...|+..|.++||+|.++......+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 788999999999999999999999999999999665433333
No 215
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=76.75 E-value=23 Score=30.25 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=52.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCE--E-EEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFR--V-TFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~--V-t~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
|||+|+..+.. ..+..+.++|.+++|+ | .+++.++.......... .++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~~~----------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADEKN----------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHGGG-----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccccC-----------
Confidence 58998865554 5566778899999997 4 44444443332221110 122222111000
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc-hHHHHHHHcCCceEEEeCc
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG-WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~-~~~~~A~~~giP~i~~~~~ 137 (459)
+ .-....++.+.+.++. .+||++|.-.+.. -...+-+.....++-++++
T Consensus 61 -~-~~~~~~~~~~~~~l~~------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 -F-QPRSENDEELLELLES------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -S-SSHHHHHHHHHHHHHH------TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -C-CchHhhhhHHHHHHHh------hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 0 0001112334444444 8999998876532 3444456667777777765
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.43 E-value=18 Score=31.43 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
|+|+...+.|=..-...||..++.+|.+|.+++.+.+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 55666778899999999999999999999999988654
No 217
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=75.40 E-value=32 Score=31.28 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCccEEEeCCCcc------hHHHHHHHcCCceEEEeCc
Q 012652 92 KLEELIEEINGRDDEKIDCFISDGFMG------WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 92 ~~~~l~~~l~~~~~~~pDlvi~D~~~~------~~~~~A~~~giP~i~~~~~ 137 (459)
.+...++. ..|||||+..... -+..+|+.+|+|++++...
T Consensus 103 ~La~ai~~------~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQK------AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHH------hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34445555 5799999865543 4688999999999987654
No 218
>PHA02542 41 41 helicase; Provisional
Probab=75.37 E-value=16 Score=36.65 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
+++...|+.|=..-.+.+|...++.|+.|.|++-+...+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 45667888899999999999998899999999987655544
No 219
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=75.25 E-value=23 Score=32.41 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGME 70 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 70 (459)
|.++||+++.+++...-. .+++.|.+.|.+|.++......+... ....++..-++-+..
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~--------~l~~~DgLvipGGfs 59 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERK--------SVSDYDCLVIPGGFS 59 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccccc--------chhhCCEEEECCCCC
Confidence 678899999988775443 55788989999999887643211100 113677777776643
No 220
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=74.55 E-value=30 Score=32.94 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=62.7
Q ss_pred CEEEEEcCCCc-c----CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCCh
Q 012652 4 PHILVFSTPAQ-G----HVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDP 78 (459)
Q Consensus 4 ~~il~~~~~~~-g----H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (459)
..|+|.|..+. . -..-...|++.|.++|.+|.++.++...+..++-.. .+....
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~-------------- 234 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAV-------------- 234 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCcc--------------
Confidence 46777777233 2 344788999999999999999998754444433210 000000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcc
Q 012652 79 GKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSC 138 (459)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~ 138 (459)
. -.....+.++...+ ..-|++|+.- .....+|..+|.|+|.+....
T Consensus 235 ~-------l~~k~sL~e~~~li-----~~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 235 I-------LAGKTSLEELAALI-----AGADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred c-------cCCCCCHHHHHHHH-----hcCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 0 11233355555554 3478888774 467899999999999987543
No 221
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=74.43 E-value=6 Score=36.07 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
..+++|+..++.|=.+=..+||.+|.++|+.|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 45788999888888888899999999899999999998887777554
No 222
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=74.07 E-value=20 Score=32.46 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
.++|+++..-+-| ..||+.|.++|+.|++.+...... . .. .+..... ..+ .
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~-~~--------~~~~v~~--G~l------~------ 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P-AD--------LPGPVRV--GGF------G------ 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c-cc--------CCceEEE--CCC------C------
Confidence 4567777655544 578999999999988877655443 1 11 1222221 000 0
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc------hHHHHHHHcCCceEEEe
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG------WSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~------~~~~~A~~~giP~i~~~ 135 (459)
....+.++++. .+.++||==.+-+ -+..+|+.+|||++.+.
T Consensus 53 ------~~~~l~~~l~~------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 ------GAEGLAAYLRE------EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred ------CHHHHHHHHHH------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 12345555566 8899877222222 35678899999999864
No 223
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=73.76 E-value=18 Score=30.72 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=63.7
Q ss_pred cCHHHHHHHHHHH-HhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC-------------CCCCCC-------C
Q 012652 15 GHVIPLLEFSQCL-AKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP-------------DGMEPW-------E 73 (459)
Q Consensus 15 gH~~p~~~La~~L-~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-------~ 73 (459)
+.+.-.+..|++| .+.|.+|.+.-+ .....+++.. ++....++ ...... .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 6677888999999 789999988766 5666776652 44444443 111100 1
Q ss_pred CCCChHHHHHHHHH-------hccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCcch
Q 012652 74 ERTDPGKLIEKVLQ-------VMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 74 ~~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~~~ 139 (459)
...+...+.+.+.- .....++..+..++. .+.|+||.+.. ...+|+++|+|++.+.++..
T Consensus 88 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 88 IIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp -SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred ccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 11223333333311 114567778888877 78999999963 47889999999998765433
No 224
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=73.65 E-value=8.1 Score=37.41 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++...++.|=..-++.+|..+.+.|..|.|++.+...+.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 456667788999999999999999999999998876555443
No 225
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=73.63 E-value=6.8 Score=33.68 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=36.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHhh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAK-HGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 49 (459)
+||++.-.++.| .+-...++++|.+ .||+|.++.++...+.+...
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 467766666656 7779999999999 59999999998888777643
No 226
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=73.18 E-value=6.9 Score=38.76 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=29.3
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 1 MS-SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 1 m~-~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
|. .||||++..+++-| +|+..|++-++...+++.+.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 65 68999999998877 6899999988665666655554
No 227
>PRK08506 replicative DNA helicase; Provisional
Probab=73.13 E-value=18 Score=36.36 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++-..|+.|=..-.+.+|...++.|+.|.|++.+.....+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 456667888999999999999988999999999876655543
No 228
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=72.68 E-value=16 Score=33.97 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=39.3
Q ss_pred hhcCCCccceeeccCchhHHHhhhc----CCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHh
Q 012652 345 VLSHPSIACFLSHCGWNSTMEGVSN----GIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 345 iL~~~~~~~~I~HgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
+-..+++ +|+-||-||+.+++.. ++|++.+ |.- .+|-. ..++.+++.+++.+++
T Consensus 60 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGI--------n~G------~lGFL------~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 60 IGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGI--------NHG------RLGFI------TDIPLDDMQETLPPML 117 (291)
T ss_pred hccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEE--------cCC------Ccccc------ccCCHHHHHHHHHHHH
Confidence 3345566 9999999999999764 6788776 322 12221 3456788888888888
Q ss_pred CCH
Q 012652 421 GDQ 423 (459)
Q Consensus 421 ~~~ 423 (459)
++.
T Consensus 118 ~g~ 120 (291)
T PRK02155 118 AGN 120 (291)
T ss_pred cCC
Confidence 653
No 229
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.51 E-value=31 Score=34.33 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
.+||++|.... ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 78999999863 5788999999998653
No 230
>PRK11823 DNA repair protein RadA; Provisional
Probab=72.42 E-value=8.8 Score=38.23 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=35.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++...++.|=..-++.++..+.++|++|.|++.....+.+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 556777788999999999999998999999999877665553
No 231
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=72.38 E-value=21 Score=35.31 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++...|+.|=..-++.+|..++ +.|+.|.|++.+...+.+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 45666788899999999998887 6799999999876655543
No 232
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=72.19 E-value=8 Score=27.93 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~ 38 (459)
..++++..+...|......+|+.|.++|..|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 45778888888999999999999999999998764
No 233
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=71.87 E-value=37 Score=26.33 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHH
Q 012652 16 HVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEE 95 (459)
Q Consensus 16 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (459)
+=.-++.+|+.|.+.|+++. .++.....+++. |+.+..+...-. + ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~---------Gi~~~~v~~~~~-~----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADA---------GIPVRAVSKRHE-D----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHc---------CCceEEEEecCC-C----------------CCcHHHH
Confidence 55678899999999999983 455777777775 666655432211 0 1222322
Q ss_pred HHHHHhCCCCCCccEEEeCC--Cc--------chHHHHHHHcCCceEE
Q 012652 96 LIEEINGRDDEKIDCFISDG--FM--------GWSMEVAEKMKLRRAV 133 (459)
Q Consensus 96 l~~~l~~~~~~~pDlvi~D~--~~--------~~~~~~A~~~giP~i~ 133 (459)
+++. . .++|+||.-+ .. .....+|-.++||+++
T Consensus 62 ~i~~---~--g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 62 AIAE---K--GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHhC---C--CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 2222 0 3789988732 22 1345678889999997
No 234
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=71.62 E-value=20 Score=31.89 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=34.9
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 6 ILVFST-PAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 6 il~~~~-~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
|.|++. |+.|=..-.+.||.+|+++|-.|+++=.++++...+-
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 345553 4669999999999999999999999998887766643
No 235
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=71.45 E-value=27 Score=35.28 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=69.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhcc-CC-----CCCCeEEEecCCCCCCCCCCCC
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGK-NY-----LGEQIRLVSIPDGMEPWEERTD 77 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~-~~-----~~~~~~~~~i~~~~~~~~~~~~ 77 (459)
.-+++...++.|=..-.++++.+.+++|.+|.+++.+...+.+...-..- .. ....+.+..... .. .
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p----~~--~- 336 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYP----ES--A- 336 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccc----cc--C-
Confidence 34677788899999999999999999999999999887766654432100 00 000122222110 00 0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcch---------------HHHHHHHcCCceEEEeCc
Q 012652 78 PGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGW---------------SMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~---------------~~~~A~~~giP~i~~~~~ 137 (459)
..+..+..+++.+.+ .++|.||.|..... ....++..||..+.+..+
T Consensus 337 ----------~~~~~~~~i~~~i~~---~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~~ 398 (484)
T TIGR02655 337 ----------GLEDHLQIIKSEIAD---FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTS 398 (484)
T ss_pred ----------ChHHHHHHHHHHHHH---cCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeecc
Confidence 012345555555555 89999999987632 122346678887766443
No 236
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=71.30 E-value=11 Score=30.60 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|++.||++.+.+..||=...--+++.|+..|.+|.....-..
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~t 51 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQT 51 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCC
Confidence 357899999999999999999999999999999999875443
No 237
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=71.09 E-value=27 Score=31.33 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHh
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKH-GFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~v~~ 48 (459)
+++...++.|=..-++.++..++.+ |+.|.|++.+.....+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 4456677889999999999988877 999999998776655443
No 238
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.54 E-value=11 Score=35.67 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
|+++||+++..++.| ..+|..|.+.||+|+++.... .+.+.+.
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~~ 45 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVREN 45 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHhC
Confidence 457899999888776 456788999999999998765 3444443
No 239
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=70.50 E-value=7.1 Score=33.51 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=34.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
.||++...++.|=+ -...+.+.|+++|++|.++.++...+.+..
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 46776666655544 489999999999999999999887777653
No 240
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.37 E-value=36 Score=33.89 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
..+++++. .|. -...+|+.|+++||+|+++....
T Consensus 5 ~k~v~iiG---~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVG---AGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEEC---CCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 45676664 333 22499999999999999987643
No 241
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.32 E-value=39 Score=33.09 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=37.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
..|+++..=+.|-...+..||..|+++|+.|.+++.+-+.....
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~ 144 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAI 144 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHH
Confidence 45777778899999999999999999999999999876654443
No 242
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=70.19 E-value=23 Score=31.26 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
+.||++.+.++..|-....-++..|..+|++|++++.+-
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 468999999999999999999999999999999998654
No 243
>PRK05595 replicative DNA helicase; Provisional
Probab=70.07 E-value=20 Score=35.72 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++-..|+.|=..-.+.+|..++ +.|+.|.|++.+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 44566778899999999998876 6799999999876655543
No 244
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=70.05 E-value=60 Score=34.59 Aligned_cols=164 Identities=10% Similarity=0.103 Sum_probs=96.0
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCC----CCCCChhHHHHhcCCcee---ecccch---hh
Q 012652 275 SVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDA----NDVYPRGFQERVATRGQM---IGWAPQ---QR 344 (459)
Q Consensus 275 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~nv~i---~~~vpq---~~ 344 (459)
.++|+++=.+...+.......++.+.+.|.+++++.++...+.. .-.+..+-++ +....+- ++-++. .+
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed-~~~~~~TG~efD~ls~~~~~~ 650 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDED-VSSMALTGSEFDDLSDEELDD 650 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCcc-ccccccchhhhhcCCHHHHHH
Confidence 48999886666777778888888999999999999887611100 0000000000 0000000 111221 12
Q ss_pred hhcCCCccceeeccCc---hhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhC
Q 012652 345 VLSHPSIACFLSHCGW---NSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLG 421 (459)
Q Consensus 345 iL~~~~~~~~I~HgG~---~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 421 (459)
+..++. ++..+-- --+.|+|..--=++.+ .+|--.-|-.+..+ .+|+-... --.+.-.+|-+=+|.
T Consensus 651 ~~~~~~---vFaR~~P~HK~kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAMG~-----~GTdVaKeAsDMVL~ 719 (972)
T KOG0202|consen 651 AVRRVL---VFARAEPQHKLKIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAMGI-----SGTDVAKEASDMVLA 719 (972)
T ss_pred Hhhcce---EEEecCchhHHHHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceeecC-----CccHhhHhhhhcEEe
Confidence 222222 3333332 3467888777776665 56666566666663 77776632 234555666677788
Q ss_pred CHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 422 DQNFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 422 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
|+.|.. +-+|+++|-+.+.++++||+++.
T Consensus 720 DDnFst--------IvaAVEEGr~IynNik~Fir~~l 748 (972)
T KOG0202|consen 720 DDNFST--------IVAAVEEGRAIYNNIKNFIRYLL 748 (972)
T ss_pred cCcHHH--------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 887643 34577889999999999999874
No 245
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=69.21 E-value=15 Score=36.59 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++...++.|=..-++.++..+.++|++|.|++.+...+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 556667788999999999999999999999999876655543
No 246
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=69.17 E-value=74 Score=27.35 Aligned_cols=56 Identities=25% Similarity=0.257 Sum_probs=35.0
Q ss_pred CEEEEEc---CCC-ccCHH-HHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC
Q 012652 4 PHILVFS---TPA-QGHVI-PLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP 66 (459)
Q Consensus 4 ~~il~~~---~~~-~gH~~-p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~ 66 (459)
.||+++. .|+ +|=+- -.-.|+..|+++||+||+++.....+.-. ....+++...++
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~-------~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE-------FEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC-------cccCCeEEEEeC
Confidence 4566665 333 34443 45567888888999999999865442221 122478888776
No 247
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=69.00 E-value=4.9 Score=38.73 Aligned_cols=103 Identities=24% Similarity=0.391 Sum_probs=68.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEK 84 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (459)
=||+-.-|+-|--.=+++++..|+++| .|.|++.+.....++-... ++.. +. .+ +..
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~-------RL~~---~~--------~~----l~l 151 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD-------RLGL---PT--------NN----LYL 151 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH-------HhCC---Cc--------cc----eEE
Confidence 356666788899999999999999999 9999999887776643211 1110 00 00 001
Q ss_pred HHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc-h--------------------HHHHHHHcCCceEEEeC
Q 012652 85 VLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG-W--------------------SMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 85 ~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~-~--------------------~~~~A~~~giP~i~~~~ 136 (459)
+ .+--++++++.+.. .+||++|.|.... + ...+|+..||+.+.+.+
T Consensus 152 ~---aEt~~e~I~~~l~~---~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 152 L---AETNLEDIIAELEQ---EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred e---hhcCHHHHHHHHHh---cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 1 12235566666666 8999999997532 1 23578888999887654
No 248
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=68.98 E-value=79 Score=27.60 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=79.1
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhc-CCceeecccchhhhhcCCC
Q 012652 272 QPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVA-TRGQMIGWAPQQRVLSHPS 350 (459)
Q Consensus 272 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~nv~i~~~vpq~~iL~~~~ 350 (459)
.++.++.|..|.++ ...++.|...+.++.++ ... +.+.+.+..+ .++.......+..-+..++
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ad 72 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAF 72 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------CCHHHHHHHhCCCEEEEecCCChhhcCCce
Confidence 34668888777543 33444555557665544 332 1122222222 2344444444455677777
Q ss_pred ccceeeccCchhHHHhhh----cCCceeccccccccchhh-----hhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhC
Q 012652 351 IACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNE-----SYICDIWKVGLKLDKDESGIITGEEISNKLVQVLG 421 (459)
Q Consensus 351 ~~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na-----~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 421 (459)
+ +|.--+...+.+.++ .++++-++ |.+..+ +.+.+ -++-+.+...+....-+..|++.|.+++.
T Consensus 73 l--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~-g~l~iaIsT~G~sP~la~~lr~~ie~~~~ 145 (202)
T PRK06718 73 L--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHR-GKLTISVSTDGASPKLAKKIRDELEALYD 145 (202)
T ss_pred E--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEc-CCeEEEEECCCCChHHHHHHHHHHHHHcc
Confidence 7 888777666555544 55655443 443332 23333 24444444332344556888888888873
Q ss_pred C--HHHHHHHHHHHHHHHhh
Q 012652 422 D--QNFKARALELKEITMSS 439 (459)
Q Consensus 422 ~--~~~~~~a~~l~~~~~~~ 439 (459)
. ..+-+.+.++++.+++.
T Consensus 146 ~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 146 ESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 3 25677777777777664
No 249
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=68.94 E-value=42 Score=33.27 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.9
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 89999999974 5788999999998653
No 250
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=68.59 E-value=28 Score=31.79 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=26.7
Q ss_pred CCccEEE-eCCCcc-hHHHHHHHcCCceEEEeCcchhH
Q 012652 106 EKIDCFI-SDGFMG-WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 106 ~~pDlvi-~D~~~~-~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
..||+|| .|+..- .+..=|.++|||+|.+..+..-+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp 193 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDP 193 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCC
Confidence 4799986 454433 56777999999999998776643
No 251
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=68.41 E-value=64 Score=26.35 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
+++|++.. ..++-.-++.+++.|.+. |+.+ +.++...+.+++. .|+.+..+..+ +.
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~vi~~-~~--------- 61 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRLLSG-PL--------- 61 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEEEcC-CC---------
Confidence 45565554 456677889999999999 9995 3455777777765 15555443100 00
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCC--Ccc--------hHHHHHHHcCCceEEEe
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDG--FMG--------WSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~--~~~--------~~~~~A~~~giP~i~~~ 135 (459)
...+.+.+++.. .+.|+||.-. ... .....|-.+|||+++-.
T Consensus 62 -------gg~~~i~~~I~~------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l 113 (142)
T PRK05234 62 -------GGDQQIGALIAE------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNR 113 (142)
T ss_pred -------CCchhHHHHHHc------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCH
Confidence 012334455555 8999999843 321 34566888999999743
No 252
>PRK09620 hypothetical protein; Provisional
Probab=68.09 E-value=6.9 Score=35.00 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCC
Q 012652 1 MSSPHILVFSTPAQGHVIP------------LLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p------------~~~La~~L~~rGh~Vt~~~~~ 40 (459)
|+..||++.+.|+.=.+.| -..||++|.++||+|+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4566788777664433332 367899999999999999764
No 253
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.07 E-value=31 Score=34.07 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=34.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK 44 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 44 (459)
-|+|+...+.|=..-+..||..|+++|++|.+++.+.+..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 3557777788999999999999999999999999877653
No 254
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=67.90 E-value=84 Score=27.51 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=77.5
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHh-cCCceeecccchhhhhcCCCc
Q 012652 273 PKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERV-ATRGQMIGWAPQQRVLSHPSI 351 (459)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~i~~~vpq~~iL~~~~~ 351 (459)
++.++.|..|..+ ..-++.|.+.+.++.++. +. ..+.+.+-. ..++....--.+...+..+++
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvs-p~--------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIA-EE--------LESELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEc-CC--------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 3568888777543 223344555677765543 32 112222211 124544322223445677676
Q ss_pred cceeeccCchhHH-----HhhhcCCceecc--ccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC--
Q 012652 352 ACFLSHCGWNSTM-----EGVSNGIPFLCW--PYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD-- 422 (459)
Q Consensus 352 ~~~I~HgG~~s~~-----eal~~gvP~v~~--P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~-- 422 (459)
+|..-|...+. +|-..|+|+-++ |-..| +..-+.+++ =++-+.+...+....-+..|++.|.+++..
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~-g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~ 148 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDR-SPVVVAISSGGAAPVLARLLRERIETLLPPSL 148 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEc-CCEEEEEECCCCCcHHHHHHHHHHHHhcchhH
Confidence 88888876433 445678888433 33333 222223333 134444443223445568899999999853
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012652 423 QNFKARALELKEITMSS 439 (459)
Q Consensus 423 ~~~~~~a~~l~~~~~~~ 439 (459)
..+-+.+.++++.+++.
T Consensus 149 ~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 149 GDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 24666666666666654
No 255
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=67.81 E-value=60 Score=32.46 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 1 MSSPHILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 1 m~~~~il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
|++.+++|.... +.|=..-...|++.|+++|++|..+=+
T Consensus 1 ~~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 554456666544 448888899999999999999998855
No 256
>PRK06988 putative formyltransferase; Provisional
Probab=67.67 E-value=42 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
++||+|+..+. ..+...+.|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 47999986543 3456677888889998877653
No 257
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.91 E-value=51 Score=31.09 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=38.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
-|+|+...+.|-....-.||..|.+.|+.|.++..+-|.....++
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQ 185 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQ 185 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHH
Confidence 366888889999999999999999999999999988776554433
No 258
>PRK10867 signal recognition particle protein; Provisional
Probab=66.42 E-value=45 Score=33.03 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=34.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKH-GFRVTFVNSEYNHKRV 46 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~v 46 (459)
-|+|+..++.|=..-...||..|+++ |+.|.+++.+.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 35566677889999999999999998 9999999988665543
No 259
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=66.35 E-value=31 Score=31.76 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=53.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKV 85 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (459)
|+++..|+.|=......|++.|.+.|.+|.+++.+... +... . +. ...-.+..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~---------~--y~-----------~~~~Ek~~--- 56 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN---------D--YA-----------DSKKEKEA--- 56 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS---------S--S-------------GGGHHHH---
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh---------h--hh-----------chhhhHHH---
Confidence 67888999999999999999999999999998853332 2111 0 00 00001111
Q ss_pred HHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc------hHHHHHHHcCCceEEEeCcchhH
Q 012652 86 LQVMPGKLEELIEEINGRDDEKIDCFISDGFMG------WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 86 ~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~------~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
.......++..+. +-++||.|.... ....+|+.++.++..++......
T Consensus 57 R~~l~s~v~r~ls--------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e 110 (270)
T PF08433_consen 57 RGSLKSAVERALS--------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLE 110 (270)
T ss_dssp HHHHHHHHHHHHT--------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HH
T ss_pred HHHHHHHHHHhhc--------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 1112222333222 238999998764 25689999999999877665543
No 260
>PRK08760 replicative DNA helicase; Provisional
Probab=66.27 E-value=19 Score=36.24 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=33.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAK-HGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~v 46 (459)
|++...|+.|=..-.+.+|...+. .|+.|.|++.+...+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 456668888999999999998874 59999999987655544
No 261
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=66.22 E-value=49 Score=33.35 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEE
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAV 133 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~ 133 (459)
.+||++|.+. ....+|+++|||++-
T Consensus 392 ~~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEecC---chhhhhhhcCCCEEE
Confidence 7899999983 567889999999984
No 262
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=66.05 E-value=85 Score=27.36 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCC
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHG--FRVTFVNSE 40 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rG--h~Vt~~~~~ 40 (459)
+||++++.+..+-+. +|.+.+.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 789998876654443 5666676654 778876443
No 263
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.93 E-value=27 Score=32.61 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=38.5
Q ss_pred cCCCccceeeccCchhHHHhhh----cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 347 SHPSIACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 347 ~~~~~~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
..+++ +|+=||-||+.+++. .++|++.+ |.- .+|- + ..++.+++.+++.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgi--------n~G------~lGF-l-----~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGI--------NRG------RLGF-L-----TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEE--------eCC------cccc-c-----ccCCHHHHHHHHHHHHcC
Confidence 34566 999999999998875 36787776 221 1221 1 346789999999999865
Q ss_pred H
Q 012652 423 Q 423 (459)
Q Consensus 423 ~ 423 (459)
.
T Consensus 119 ~ 119 (295)
T PRK01231 119 H 119 (295)
T ss_pred C
Confidence 3
No 264
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=65.77 E-value=39 Score=28.37 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=22.3
Q ss_pred ccceeeccCch------hHHHhhhcCCceecccc
Q 012652 351 IACFLSHCGWN------STMEGVSNGIPFLCWPY 378 (459)
Q Consensus 351 ~~~~I~HgG~~------s~~eal~~gvP~v~~P~ 378 (459)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 34488888844 77899999999999963
No 265
>PRK06321 replicative DNA helicase; Provisional
Probab=65.41 E-value=39 Score=33.95 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~ 47 (459)
|++-..|+.|=....+.+|...+ +.|+.|.|++.+.....+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 45666888899999999999987 4699999999876555543
No 266
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=64.99 E-value=45 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEE
Q 012652 11 TPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (459)
Q Consensus 11 ~~~~gH~~p~~~La~~L~~rGh~Vt~~ 37 (459)
.++.|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 345688889999999999999999997
No 267
>PRK07952 DNA replication protein DnaC; Validated
Probab=64.87 E-value=30 Score=31.32 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=32.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
.+++...++.|=..=..+||.+|.++|+.|.+++.......+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 456666777788888889999999999999998764444433
No 268
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=64.82 E-value=70 Score=28.63 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=37.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHhhh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHG-FRVTFVNSEYNHKRVMKSL 50 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rG-h~Vt~~~~~~~~~~v~~~~ 50 (459)
+||+++.=++.|-..-..-|+.+|.++| ++|..+-.+.+...-.+.|
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LG 48 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALG 48 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcC
Confidence 5889999899999888888788888876 9999998877655554443
No 269
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=64.59 E-value=54 Score=33.36 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
.+||++|.+. .+..+|+++|||++.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 8999999986 35788999999998753
No 270
>PRK09165 replicative DNA helicase; Provisional
Probab=64.51 E-value=32 Score=34.85 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCEEEEEeCCcchHHHHh
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKH---------------GFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~r---------------Gh~Vt~~~~~~~~~~v~~ 48 (459)
+++...|+.|=..-.+.+|...+++ |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 4566678889999999998888753 889999998776655543
No 271
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=64.46 E-value=5.2 Score=33.34 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
||.++..+..|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 567777666665 78999999999999999865
No 272
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.44 E-value=11 Score=34.44 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=37.3
Q ss_pred CCccceeeccCchhHHHhhh------cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 349 PSIACFLSHCGWNSTMEGVS------NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~------~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
+|+ +|+-||-||+..|+. .++|++.+ |.- .+|-. ..++.+++.+++.+++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGI--------N~G------~lGFL------~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGV--------HTG------HLGFY------TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEE--------eCC------Cceec------ccCCHHHHHHHHHHHHcC
Confidence 455 999999999999976 48898877 322 12221 345678888888888865
Q ss_pred H
Q 012652 423 Q 423 (459)
Q Consensus 423 ~ 423 (459)
.
T Consensus 94 ~ 94 (265)
T PRK04885 94 P 94 (265)
T ss_pred C
Confidence 3
No 273
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=64.35 E-value=12 Score=32.10 Aligned_cols=40 Identities=20% Similarity=0.063 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK 44 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 44 (459)
||++.-.++.|=+.-.+.+.++|.+.|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 6777666666766666799999999999999999876543
No 274
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=63.94 E-value=71 Score=30.14 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=22.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
|||+|+..+.. .+...++|.++||+|..+.+
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt 31 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVT 31 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEc
Confidence 58888865543 36777888889999876654
No 275
>PLN02470 acetolactate synthase
Probab=63.90 E-value=39 Score=35.12 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=52.4
Q ss_pred EeCCcccC--CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchh--------hhhcCC
Q 012652 280 AFGSHTVL--DHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQ--------RVLSHP 349 (459)
Q Consensus 280 s~Gs~~~~--~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~--------~iL~~~ 349 (459)
+|||.... .....+.+++.|++.|.+.|+-+.+. ....+-+.+.+ .++++.+.-.... .-..+-
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~----~~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg 75 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGG----ASMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASG 75 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhC
Confidence 35555322 22336778888888888888888665 11112222210 1234443222111 111222
Q ss_pred CccceeeccCc------hhHHHhhhcCCceeccc
Q 012652 350 SIACFLSHCGW------NSTMEGVSNGIPFLCWP 377 (459)
Q Consensus 350 ~~~~~I~HgG~------~s~~eal~~gvP~v~~P 377 (459)
.++++++|.|- +.+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 35568899885 47889999999999995
No 276
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=63.81 E-value=85 Score=33.37 Aligned_cols=102 Identities=17% Similarity=0.252 Sum_probs=60.2
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHH
Q 012652 5 HILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIE 83 (459)
Q Consensus 5 ~il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (459)
.|++.+.. ..|=..-.+.|++.|.++|.+|-++=+-.... + . . ....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p-~-----------------------~-------~-~~~~ 51 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPP-L-----------------------T-------M-SEVE 51 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCC-C-----------------------C-------H-HHHH
Confidence 46666544 45889999999999999999999986422110 0 0 0 0000
Q ss_pred HHHH--hccHHHHHHHHHHhCCCCCCccEEEeCCCcc---------hHHHHHHHcCCceEEEeCcch
Q 012652 84 KVLQ--VMPGKLEELIEEINGRDDEKIDCFISDGFMG---------WSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 84 ~~~~--~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~---------~~~~~A~~~giP~i~~~~~~~ 139 (459)
.+.. ..+..++.+++.+.... .++|++|.|...+ ....+|+.++.|++.+.....
T Consensus 52 ~~~~~~~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~ 117 (684)
T PRK05632 52 ALLASGQLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGN 117 (684)
T ss_pred HHHhccCChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCC
Confidence 0000 01122233333332211 5799999776532 246779999999998876543
No 277
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=63.81 E-value=68 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|+|+..++.|=..-...||..|++.|++|.++..+.+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4466666779999999999999999999999998754
No 278
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=63.75 E-value=14 Score=34.59 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCCCEEE-EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 1 MSSPHIL-VFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 1 m~~~~il-~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|++||++ |..=++-|=..-...||..|+++|++|.++-.+..
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 7877766 55455668888999999999999999999965443
No 279
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=63.63 E-value=44 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=26.8
Q ss_pred CCccEEE-eCCCcc-hHHHHHHHcCCceEEEeCcchhH
Q 012652 106 EKIDCFI-SDGFMG-WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 106 ~~pDlvi-~D~~~~-~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
..||+|| .|+..- .+..=|.++|||+|.+..+..-+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p 191 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDP 191 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCC
Confidence 5799986 455433 56777999999999998776643
No 280
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=63.60 E-value=48 Score=31.44 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=58.8
Q ss_pred EEEEEcCCCcc-----CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChH
Q 012652 5 HILVFSTPAQG-----HVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPG 79 (459)
Q Consensus 5 ~il~~~~~~~g-----H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (459)
-|+|.|+.+.| ...-...|++.|.++|.+|.+++++...+..++-.. .. +...
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-------~~-----~~~~---------- 233 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-------LL-----PGEL---------- 233 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-------hC-----Cccc----------
Confidence 45566544323 233678999999988999999988766554433210 00 0000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeC
Q 012652 80 KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~ 136 (459)
. .+ .....+.++...++ +-|++|+.- .....+|..+|+|++.+..
T Consensus 234 --~-~l--~g~~sL~el~ali~-----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 234 --R-NL--AGETSLDEAVDLIA-----LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred --c-cC--CCCCCHHHHHHHHH-----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 0 00 11123455555543 478999875 4678999999999998754
No 281
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=63.54 E-value=10 Score=30.40 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=28.8
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 14 QGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 14 ~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
..-+.-.+=++..|+++||+|+++++++....++-.
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 355566778899999999999999998888887654
No 282
>CHL00067 rps2 ribosomal protein S2
Probab=63.04 E-value=32 Score=30.74 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=27.0
Q ss_pred CCccEEEe-CCCcc-hHHHHHHHcCCceEEEeCcchhH
Q 012652 106 EKIDCFIS-DGFMG-WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 106 ~~pDlvi~-D~~~~-~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
..||+||. |+..- .+..=|.++|||+|.+..+..-+
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p 197 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDP 197 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 57999865 44432 57777999999999998876654
No 283
>PRK05920 aromatic acid decarboxylase; Validated
Probab=62.93 E-value=14 Score=32.34 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
..||++.-.+ .+..+-...+.++|++.||+|.++.++....++..
T Consensus 3 ~krIllgITG-siaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITG-ASGAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeC-HHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 4567766545 44447999999999999999999999887777754
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=62.83 E-value=17 Score=31.03 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=35.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++...++.|=..-...++.+..+.|..|.|++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 567777888999999999999999999999999876665543
No 285
>PRK08006 replicative DNA helicase; Provisional
Probab=62.76 E-value=52 Score=33.07 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~ 47 (459)
|++-..|+.|=....+.+|...+ +.|+.|.|++.+-..+.+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 45666889999999999999887 4699999999876555443
No 286
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=62.69 E-value=11 Score=32.28 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
|++...++.|- +-...+.++|+++|++|.++.++.....+..
T Consensus 2 illgvtGsiaa-~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 2 IVVAMTGASGV-IYGIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred EEEEEECHHHH-HHHHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 44444444444 4458999999999999999999888877753
No 287
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=62.35 E-value=15 Score=36.01 Aligned_cols=47 Identities=23% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 2 SSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 2 ~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
++.||++...++. ..+-...+.++|++.|++|.++.++....++...
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 4667887766655 5668899999999999999999998877777543
No 288
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=62.33 E-value=33 Score=28.74 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=29.1
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 6 ILVFS-TPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 6 il~~~-~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|++++ -++.|=..-...||..|+++|++|.++-.+..
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 33444 45668888999999999999999999976544
No 289
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=62.29 E-value=82 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=26.8
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEe
Q 012652 6 ILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVN 38 (459)
Q Consensus 6 il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~ 38 (459)
|++.+.. ..|-..-.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4455444 45999999999999999999998875
No 290
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=61.83 E-value=61 Score=32.08 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKR 45 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~ 45 (459)
-|+++..++.|=..-...||..|. ++|++|.+++.+.+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 355666778899999999999997 68999999998866544
No 291
>PRK07206 hypothetical protein; Provisional
Probab=61.62 E-value=40 Score=33.17 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
.+++++-.... ...++++++++|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 46777765333 3468999999999999888654
No 292
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.56 E-value=13 Score=34.42 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=39.6
Q ss_pred hhhcCCCccceeeccCchhHHHhhh----cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 344 RVLSHPSIACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 344 ~iL~~~~~~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
++...+++ +|+-||-||+..++. .++|++.+ |.-+ +|- + ..++.+++.+++.++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGI--------N~G~------lGF-L-----t~~~~~~~~~~l~~i 117 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGI--------HAGH------LGF-L-----TDITVDEAEKFFQAF 117 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEE--------eCCC------ccc-C-----CcCCHHHHHHHHHHH
Confidence 33445666 999999999997765 37888777 2221 222 1 345678899999998
Q ss_pred hCCH
Q 012652 420 LGDQ 423 (459)
Q Consensus 420 l~~~ 423 (459)
+++.
T Consensus 118 ~~g~ 121 (287)
T PRK14077 118 FQGE 121 (287)
T ss_pred HcCC
Confidence 8653
No 293
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=61.38 E-value=41 Score=30.51 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=54.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIE 83 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (459)
|||+++..-+-| ..||+.|.++|+ |++-+..++...+.... ........ ..+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~~--G~l-------------- 52 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVRV--GRL-------------- 52 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEEE--CCC--------------
Confidence 577777655444 579999999999 66665555554443220 00112111 000
Q ss_pred HHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc------hHHHHHHHcCCceEEEe
Q 012652 84 KVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG------WSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~------~~~~~A~~~giP~i~~~ 135 (459)
. ....+.++++. .++|+||==.+-+ -+..+|+.+|||++.+.
T Consensus 53 --g--~~~~l~~~l~~------~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 53 --G--DEEGLAEFLRE------NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred --C--CHHHHHHHHHh------CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 0 12345555555 8899887322222 35678899999999864
No 294
>PRK14974 cell division protein FtsY; Provisional
Probab=61.28 E-value=83 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
.|+|+..++.|=..-+..||..|.++|+.|.+++.+.+
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 45677788889999999999999999999999887654
No 295
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.20 E-value=77 Score=31.04 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=35.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
.+|+|+...+.|=..-+..||..|..+|+.|.+++.+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888888899999999999999999999999987664
No 296
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.87 E-value=20 Score=29.51 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCC-CCCccEEEeCCCcc----------hHHHHHHHcCCceEEEeCcch
Q 012652 93 LEELIEEINGRD-DEKIDCFISDGFMG----------WSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 93 ~~~l~~~l~~~~-~~~pDlvi~D~~~~----------~~~~~A~~~giP~i~~~~~~~ 139 (459)
+++++..++..+ ++.||+|++..-.- -+..+|+++|+|++-.+.+..
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 456777776633 79999999865321 367889999999997665443
No 297
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=60.85 E-value=51 Score=30.11 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=32.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
+++...|+.|=..-+++++...+++|..|.|++.+...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 56777888899999999999888899999999986433
No 298
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=60.76 E-value=1.1e+02 Score=26.36 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=60.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC---C-c-chHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS---E-Y-NHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGK 80 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~---~-~-~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (459)
|.+++..+.|-....+.+|-+-.-+|.+|.++-. . . -+....... ..++.++..++++..... +..+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~------~~~v~~~~~~~g~tw~~~--~~~~ 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF------GLGVEFHGMGEGFTWETQ--DREA 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh------ccceeEEecCCceeCCCc--CcHH
Confidence 6678888899888888777777778888887731 1 1 112222221 136888888766654421 1111
Q ss_pred HHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc
Q 012652 81 LIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG 118 (459)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~ 118 (459)
+. ..+...++...+.+.+ .++|+||.|-+..
T Consensus 103 --d~--~aa~~~w~~a~~~l~~---~~ydlviLDEl~~ 133 (198)
T COG2109 103 --DI--AAAKAGWEHAKEALAD---GKYDLVILDELNY 133 (198)
T ss_pred --HH--HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 11 3445556666666666 8999999998654
No 299
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.68 E-value=89 Score=25.26 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKR 45 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~ 45 (459)
+.+|++-+..+.+|-.-.--++..|...|++|..+......+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~ 43 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEE 43 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 3578999999999999999999999999999999987654433
No 300
>PRK08116 hypothetical protein; Validated
Probab=60.20 E-value=84 Score=28.86 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
++|+..++.|=.+=+.+++++|.++|+.|.+++.+.....+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 66777677776666778999999889999888765544433
No 301
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=59.73 E-value=59 Score=28.65 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=24.5
Q ss_pred CCccEEEeCC-Ccc-hHHHHHHHcCCceEEEeCcchh
Q 012652 106 EKIDCFISDG-FMG-WSMEVAEKMKLRRAVIWTSCAA 140 (459)
Q Consensus 106 ~~pDlvi~D~-~~~-~~~~~A~~~giP~i~~~~~~~~ 140 (459)
..||+||.-. ..- .+..=|..+|||++.+..+..-
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~ 178 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCN 178 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCCC
Confidence 5699986544 332 5667789999999999877654
No 302
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.60 E-value=56 Score=28.80 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=58.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHhhhh-cc--CC--CCCCeEEEecCCCCCCCCCCCChH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN-HKRVMKSLE-GK--NY--LGEQIRLVSIPDGMEPWEERTDPG 79 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~-~~~v~~~~~-~~--~~--~~~~~~~~~i~~~~~~~~~~~~~~ 79 (459)
+++-.-.+.|--.-+.+++..+...||.|+++++... .+.+.++-. .+ .. ....+.|.++.-. +
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~--~-------- 100 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE--P-------- 100 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc--c--------
Confidence 3444455778888899999999999999999998753 333433311 00 00 0113334333211 0
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcch
Q 012652 80 KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGW 119 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~ 119 (459)
..+-.+..+..++.+++.++. ++-|+||.|.+...
T Consensus 101 --~~~~~~~~~~~L~~l~~~~k~---~~~dViIIDSls~~ 135 (235)
T COG2874 101 --VNWGRRSARKLLDLLLEFIKR---WEKDVIIIDSLSAF 135 (235)
T ss_pred --cccChHHHHHHHHHHHhhHHh---hcCCEEEEecccHH
Confidence 111122334556666776666 89999999988653
No 303
>PRK04328 hypothetical protein; Provisional
Probab=59.52 E-value=86 Score=28.37 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
.-+++...++.|-..-..+++.+-.++|+.+.|++.....+.+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 34667778888998888888877668899999999876555443
No 304
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=59.32 E-value=42 Score=32.06 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCC
Q 012652 2 SSPHILVFSTPAQGHVIPLLEFSQCLAKHGF-RVTFVNSE 40 (459)
Q Consensus 2 ~~~~il~~~~~~~gH~~p~~~La~~L~~rGh-~Vt~~~~~ 40 (459)
+.+||+++..++-| ..+|+.|++.|+ +++++-.+
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 35789999888766 678999999998 77776554
No 305
>PRK05636 replicative DNA helicase; Provisional
Probab=59.28 E-value=25 Score=35.59 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v 46 (459)
|++...|+.|=..-.+.+|...+ +.|..|.|++.+.....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 45666788899999999998876 568999999887655444
No 306
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=59.10 E-value=17 Score=35.44 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
++..||++...++. ...-...+.+.|.+.|++|.++.++.....+...
T Consensus 1 l~~k~IllgiTGSi-aa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 1 LENKKILLGVTGGI-AAYKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCCCEEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 34567877665544 4466899999999999999999998877777543
No 307
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=59.02 E-value=10 Score=33.17 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCc-chHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHH--hc
Q 012652 13 AQGHVIPLLEFSQCLAKHGFRVTFVNSEY-NHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQ--VM 89 (459)
Q Consensus 13 ~~gH~~p~~~La~~L~~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 89 (459)
+..|+...+.++..++.+|=.+.|+++.. +.+.++..-. ...++... ..+..+. ..+.......+.. .+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~----r~~gy~~~---~~w~~G~-lTN~~~l~g~~~~~~~~ 161 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAAR----RAGGYSHN---RKWLGGL-LTNARELFGALVRKFLS 161 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHH----HhcCceee---eeeccce-eecchhhcccccccccC
Confidence 34788889999999999999999998765 4444444311 00122221 1111110 0011111111110 01
Q ss_pred cHHHHHHHHHHhCCCCCCccEEEe-CCCcc-hHHHHHHHcCCceEEEeCcchhH
Q 012652 90 PGKLEELIEEINGRDDEKIDCFIS-DGFMG-WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 90 ~~~~~~l~~~l~~~~~~~pDlvi~-D~~~~-~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
.+-..-++.. ..+|++|. |.... .+..=|.+++||+|.+.-+.+.+
T Consensus 162 ~pd~~~f~~t------~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~P 209 (251)
T KOG0832|consen 162 LPDALCFLPT------LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCNP 209 (251)
T ss_pred CCcceeeccc------CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCCCc
Confidence 1212223333 66798754 55544 67777999999999998877754
No 308
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=58.55 E-value=51 Score=32.69 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 94 EELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 94 ~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
.++.+.+++ .+||++|.+.. ...+|+++|+|++.+.
T Consensus 361 ~el~~~i~~---~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKE---EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhc---cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 444444444 88999999974 4778999999998643
No 309
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=58.54 E-value=30 Score=31.11 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
.++|+++..-+ =...|+++|...++.+++.+.........+.. .-... .
T Consensus 2 ~~~ilvlGGT~-----Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~--------~~~~~--~---------------- 50 (257)
T COG2099 2 MMRILLLGGTS-----DARALAKKLAAAPVDIILSSLTGYGAKLAEQI--------GPVRV--G---------------- 50 (257)
T ss_pred CceEEEEeccH-----HHHHHHHHhhccCccEEEEEcccccccchhcc--------CCeee--c----------------
Confidence 35566654332 35789999999998888887644433322210 00000 0
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcch------HHHHHHHcCCceEEEe
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGW------SMEVAEKMKLRRAVIW 135 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~------~~~~A~~~giP~i~~~ 135 (459)
.+ ...+.+.+++++ .+.|+||=-.+-++ +..+|+..|||++.+-
T Consensus 51 -G~--l~~e~l~~~l~e------~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 51 -GF--LGAEGLAAFLRE------EGIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred -Cc--CCHHHHHHHHHH------cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 01 123456666777 89998874433222 5678999999999854
No 310
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=58.38 E-value=17 Score=32.59 Aligned_cols=44 Identities=18% Similarity=0.034 Sum_probs=32.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhh
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~ 49 (459)
|++.-.++.+=+.-...|.+.|+++ ||+|.++.++...+.+...
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 4444333334447999999999999 9999999998877776543
No 311
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=58.34 E-value=74 Score=27.05 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=25.2
Q ss_pred CCccEEEeCCCcc---hHHHHHHHcCCceEEEeC
Q 012652 106 EKIDCFISDGFMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 106 ~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~ 136 (459)
.+||+|+...... .+..+|.++|.|+++-..
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 6799999887665 578899999999997443
No 312
>PRK07773 replicative DNA helicase; Validated
Probab=57.95 E-value=48 Score=36.38 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHh
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAK-HGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~v~~ 48 (459)
|++...|+.|=..-.+.+|...+. .|..|.|++.+...+.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 556678899999999999999875 4899999998776655543
No 313
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=57.79 E-value=84 Score=29.10 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=32.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-C-CEEEEEeCCcch
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKH-G-FRVTFVNSEYNH 43 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~r-G-h~Vt~~~~~~~~ 43 (459)
.|+|+...+.|=..-...||..++.+ | ++|.+++.+.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35566666779999999999999876 5 999999988754
No 314
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.59 E-value=86 Score=31.15 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=50.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIE 83 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (459)
.|+++.. .-.....+++-|.+.|-+|..+......+..+.. ..+ .-...+.
T Consensus 312 krvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~----------------~~~---~~~~~D~----- 362 (432)
T TIGR01285 312 KKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL----------------PVE---TVVIGDL----- 362 (432)
T ss_pred CEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC----------------CcC---cEEeCCH-----
Confidence 4555544 2346678888888888888777665443322111 000 0000111
Q ss_pred HHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEE
Q 012652 84 KVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVI 134 (459)
Q Consensus 84 ~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~ 134 (459)
..++++++. .++|++|.+.. ...+|+++|||++.+
T Consensus 363 -------~~l~~~i~~------~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 -------EDLEDLACA------AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred -------HHHHHHHhh------cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 123445555 78999999863 478899999999864
No 315
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=57.39 E-value=19 Score=30.60 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHH-hCCCEEEEEeCCcchHHHHh
Q 012652 6 ILVFSTPAQGHVIP-LLEFSQCLA-KHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 6 il~~~~~~~gH~~p-~~~La~~L~-~rGh~Vt~~~~~~~~~~v~~ 48 (459)
|+..-.+ .||... ...+.++|+ ++||+|.++.++...+.++.
T Consensus 2 i~~gitG-sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 2 IAWGITG-SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred EEEEEEc-cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 4433333 377755 889999998 46999999999887766653
No 316
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=57.27 E-value=41 Score=29.81 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=34.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
-+++...++.|=..-+..++..-.++|+.|.+++.....+.+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 355666778888888888888877889999999988766665443
No 317
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.20 E-value=18 Score=33.73 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=40.9
Q ss_pred hhhcCCCccceeeccCchhHHHhhh----cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 344 RVLSHPSIACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 344 ~iL~~~~~~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
++...+++ +|+=||-||+..++. .++|++.+ |.-+ +|- + ..++.+++.+++.++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGI--------N~G~------lGF-L-----t~~~~~~~~~~l~~i 117 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGI--------NTGR------LGF-L-----ATVSKEEIEETIDEL 117 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEE--------ecCC------CCc-c-----cccCHHHHHHHHHHH
Confidence 33445666 999999999998876 37888877 3221 222 1 345688999999999
Q ss_pred hCCH
Q 012652 420 LGDQ 423 (459)
Q Consensus 420 l~~~ 423 (459)
+++.
T Consensus 118 ~~g~ 121 (292)
T PRK01911 118 LNGD 121 (292)
T ss_pred HcCC
Confidence 8754
No 318
>PRK09739 hypothetical protein; Provisional
Probab=56.97 E-value=28 Score=30.21 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCc--cCHH-HHHHHHHHHHhCCCEEEEEeC
Q 012652 1 MSSPHILVFSTPAQ--GHVI-PLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 1 m~~~~il~~~~~~~--gH~~-p~~~La~~L~~rGh~Vt~~~~ 39 (459)
|+++||+++..... |... -.-.+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 77889997654333 3222 234456677788999998754
No 319
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=56.94 E-value=14 Score=32.98 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=26.0
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCC
Q 012652 4 PHILVFSTPAQGHVIP------------LLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p------------~~~La~~L~~rGh~Vt~~~~~ 40 (459)
||||+...++.-.+.| -.+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 3566666555444432 367889999999999999753
No 320
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=56.87 E-value=26 Score=31.46 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCccC----HHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHhhhhccCCCCCCeE--EEecCCCCCCCCC
Q 012652 3 SPHILVFSTPAQGH----VIPLLEFSQCLAKHGFRVTFVNSEYN--HKRVMKSLEGKNYLGEQIR--LVSIPDGMEPWEE 74 (459)
Q Consensus 3 ~~~il~~~~~~~gH----~~p~~~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~--~~~i~~~~~~~~~ 74 (459)
+..|+|.+..+... ......|++.|.++|.+|.++.++.. .+.+..... +.. +..+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-------~~~~~~~~~~-------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-------GLQNPVINLA-------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-------THTTTTEEET--------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-------hcccceEeec--------
Confidence 34577777554421 22358999999999989988888766 222222210 110 11100
Q ss_pred CCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCc
Q 012652 75 RTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~ 137 (459)
....+.++...++ .-|++|+.. .....+|..+|+|++.+...
T Consensus 170 --------------~~~~l~e~~ali~-----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 170 --------------GKTSLRELAALIS-----RADLVIGND--TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp --------------TTS-HHHHHHHHH-----TSSEEEEES--SHHHHHHHHTT--EEEEESS
T ss_pred --------------CCCCHHHHHHHHh-----cCCEEEecC--ChHHHHHHHHhCCEEEEecC
Confidence 1123455555553 478998774 36789999999999988644
No 321
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=56.69 E-value=56 Score=33.37 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=65.5
Q ss_pred ccCHHHHHHHH-HHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCC-C------------CCCCC---CC-
Q 012652 14 QGHVIPLLEFS-QCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPD-G------------MEPWE---ER- 75 (459)
Q Consensus 14 ~gH~~p~~~La-~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~-~------------~~~~~---~~- 75 (459)
.|++.-.+.+| +++.+.|++|.+.-. ...+.+++.. .+.+..++- + +...- ..
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~--------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~ 106 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRL--------SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQ 106 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhC--------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecC
Confidence 36777778888 446667888876554 5777776652 344444431 1 11000 01
Q ss_pred ---CChHHHHHHHHH-------hccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCc
Q 012652 76 ---TDPGKLIEKVLQ-------VMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 76 ---~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~ 137 (459)
.....++..+.- ......+..+..+++ .++++||.|. .+..+|+++|++.+.+...
T Consensus 107 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~---~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 107 DTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA---RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH---CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 111222222211 124466778888887 8999999996 3578899999999987653
No 322
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=56.62 E-value=14 Score=31.55 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
||++...+ .+...-...+.++|+++|++|.++.++....++.
T Consensus 2 ~I~lgvtG-s~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTG-SIAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcC-HHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 55555544 4455667799999999999999999987766664
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=56.61 E-value=72 Score=26.77 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK 44 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 44 (459)
+++...++.|=......++..|+++|.+|.++..+.+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 567778888999999999999999999999999876543
No 324
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.35 E-value=13 Score=34.10 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=39.6
Q ss_pred hhhhhcCCCccceeeccCchhHHHhhh----cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHH
Q 012652 342 QQRVLSHPSIACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLV 417 (459)
Q Consensus 342 q~~iL~~~~~~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~ 417 (459)
+.++...+++ +|+=||-||+..|+. .++|++.+ |.- .+|-. ..++++++.+.+.
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgI--------n~G------~lGFL------~~~~~~~~~~~l~ 93 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGI--------NRG------NLGFL------TDIDPKNAYEQLE 93 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCC------CCccc------ccCCHHHHHHHHH
Confidence 3445555666 999999999998755 36788777 222 13322 2356788888888
Q ss_pred HHhC
Q 012652 418 QVLG 421 (459)
Q Consensus 418 ~ll~ 421 (459)
+++.
T Consensus 94 ~~~~ 97 (272)
T PRK02231 94 ACLE 97 (272)
T ss_pred HHHh
Confidence 8886
No 325
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.31 E-value=17 Score=34.04 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=39.5
Q ss_pred hcCCCccceeeccCchhHHHhhhc----CCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhC
Q 012652 346 LSHPSIACFLSHCGWNSTMEGVSN----GIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLG 421 (459)
Q Consensus 346 L~~~~~~~~I~HgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 421 (459)
...+++ +|+=||-||+..|... ++|++.+ |.- .+|-. ..++.+++.+++.++++
T Consensus 66 ~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGI--------N~G------~lGFL------t~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 66 DSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTI--------NTG------HLGFL------TEAYLNQLDEAIDQVLA 123 (305)
T ss_pred ccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEE--------eCC------CCccc------ccCCHHHHHHHHHHHHc
Confidence 334566 9999999999998764 7898887 322 12211 34567899999999986
Q ss_pred CH
Q 012652 422 DQ 423 (459)
Q Consensus 422 ~~ 423 (459)
+.
T Consensus 124 g~ 125 (305)
T PRK02649 124 GQ 125 (305)
T ss_pred CC
Confidence 54
No 326
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=56.11 E-value=1.3e+02 Score=27.90 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
.++|+|+..+..|. .+|+.|+++||.|.++..+.........
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 56888888777775 5899999999999999988777665443
No 327
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=56.06 E-value=22 Score=33.59 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=31.4
Q ss_pred HhccHHHHHHHHHHhCCCCCCccEEEeCCCcchH----------HHHHHHcCCceEEE
Q 012652 87 QVMPGKLEELIEEINGRDDEKIDCFISDGFMGWS----------MEVAEKMKLRRAVI 134 (459)
Q Consensus 87 ~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~----------~~~A~~~giP~i~~ 134 (459)
...+...+.++..+++ .+||++|+.+-+-.+ ..+.+.+|||.++-
T Consensus 63 en~eea~~~i~~mv~~---~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILEMVKK---LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHHHHHh---cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3344555666666666 999999999876532 23457899999963
No 328
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=56.02 E-value=16 Score=32.53 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 16 HVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 16 H~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|+..|...|++|.++||+|.++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 57789999999999999999999863
No 329
>PRK08840 replicative DNA helicase; Provisional
Probab=55.93 E-value=74 Score=31.93 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++-..|+.|=....+.+|...+ +.|+.|.|++.+-..+.+.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~ 262 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLM 262 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHH
Confidence 45666788899999999999987 4699999999876665543
No 330
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=55.88 E-value=61 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=21.7
Q ss_pred ccceeeccCc------hhHHHhhhcCCceecccc
Q 012652 351 IACFLSHCGW------NSTMEGVSNGIPFLCWPY 378 (459)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~gvP~v~~P~ 378 (459)
..++++|+|. +.+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3348888764 467799999999999963
No 331
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.49 E-value=21 Score=33.36 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=40.9
Q ss_pred hhhcCCCccceeeccCchhHHHhhh----cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 344 RVLSHPSIACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 344 ~iL~~~~~~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
++...+|+ +|+=||-||+..|.. .++|++.+ |.-+ +|-. ..++.+++.+++.++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGI--------N~G~------lGFL------~~~~~~~~~~~l~~i 121 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGI--------NQGH------LGFL------TQIPREYMTDKLLPV 121 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEE--------ecCC------CeEe------eccCHHHHHHHHHHH
Confidence 33345666 999999999998864 37898887 3322 2322 235688899999999
Q ss_pred hCCH
Q 012652 420 LGDQ 423 (459)
Q Consensus 420 l~~~ 423 (459)
+++.
T Consensus 122 ~~g~ 125 (296)
T PRK04539 122 LEGK 125 (296)
T ss_pred HcCC
Confidence 8653
No 332
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=55.36 E-value=15 Score=36.72 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCccCHHHH------------HHHHHHHHhCCCEEEEEeCCc
Q 012652 3 SPHILVFSTPAQGHVIPL------------LEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~------------~~La~~L~~rGh~Vt~~~~~~ 41 (459)
..|||+...|+.=.+.|. ..||+++..+|++||+++.+-
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 458888888887777764 589999999999999999754
No 333
>PRK14098 glycogen synthase; Provisional
Probab=55.27 E-value=21 Score=36.13 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 3 SPHILVFSTP------AQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 3 ~~~il~~~~~------~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
++||+|++.- ..|=-.-.-+|.++|+++||+|.++.+..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 5799988721 23555567889999999999999999844
No 334
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=55.04 E-value=52 Score=30.27 Aligned_cols=99 Identities=10% Similarity=0.128 Sum_probs=57.9
Q ss_pred EEEEcCCCcc----CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHH
Q 012652 6 ILVFSTPAQG----HVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKL 81 (459)
Q Consensus 6 il~~~~~~~g----H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (459)
|+|.|..+.. ...-...|++.|.++|++|.+++.+...+..++... .+ + .. .
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~-------~~-----~----~~-~------- 179 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAA-------AL-----G----GP-R------- 179 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH-------hc-----C----CC-c-------
Confidence 4555544322 234678999999989999999888765555443210 00 0 00 0
Q ss_pred HHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeCc
Q 012652 82 IEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~~ 137 (459)
...+. ....+.++...+ .+-|++|+.. .....+|..+|+|++.+...
T Consensus 180 ~~~~~--~~~~l~e~~~li-----~~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 180 VVNLA--GKTSLRELAALL-----ARADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred cccCc--CCCCHHHHHHHH-----HhCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 00000 111244444444 3478999864 36788899999999987653
No 335
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=54.99 E-value=45 Score=33.08 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
.+||+++..+..| ++.|+.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 5789999988888 89999999999999998754443
No 336
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=54.83 E-value=1.2e+02 Score=30.28 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=21.4
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEE
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVI 134 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~ 134 (459)
.+||++|... ....+|.++|||++.+
T Consensus 394 ~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 8899999873 3467789999999875
No 337
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=54.75 E-value=74 Score=31.58 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAK-HGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~v~ 47 (459)
+++...|+.|=..-.+.+|..++. .|+.|.|++.+...+.+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 456667788999999999998875 699999999877665553
No 338
>PLN02929 NADH kinase
Probab=54.43 E-value=63 Score=30.20 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhh
Q 012652 288 DHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGV 367 (459)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal 367 (459)
.++.++.+.+.|++.+..+..+...+ + ......+|+ +|+-||-||+..|.
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~~--------~--------------------~~~~~~~Dl--vi~lGGDGT~L~aa 81 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRNE--------L--------------------SQPIRDVDL--VVAVGGDGTLLQAS 81 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeeccc--------c--------------------ccccCCCCE--EEEECCcHHHHHHH
Confidence 45567777777777777653332211 1 011234556 99999999999885
Q ss_pred h---cCCceecccccc------ccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 368 S---NGIPFLCWPYFV------DQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 368 ~---~gvP~v~~P~~~------DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
. .++|++.+-... ++..|.-. +. .-+|-.. .++.+++.+++.+++++.
T Consensus 82 ~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~------~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 82 HFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLC------AATAEDFEQVLDDVLFGR 138 (301)
T ss_pred HHcCCCCcEEEEECCCcccccccccccccc-cc-cCccccc------cCCHHHHHHHHHHHHcCC
Confidence 4 468988774431 12222221 11 1355433 356889999999999764
No 339
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=54.38 E-value=26 Score=29.17 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 2 SSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 2 ~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
+..+|+++..+.-| ...++.|.+.||+|+++++.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 34677777655433 67889999999999999654
No 340
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=54.30 E-value=58 Score=27.60 Aligned_cols=97 Identities=23% Similarity=0.251 Sum_probs=47.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC----Ccch--HHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCC
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS----EYNH--KRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTD 77 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~----~~~~--~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (459)
-.|.+++..+.|=....+.+|-+-+-+|.+|.++=. .... ..++.. +++.+.....++..... .
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l--------~~~~~~~~g~~f~~~~~--~ 73 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL--------PNVEIERFGKGFVWRMN--E 73 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG--------T--EEEE--TT----GG--G
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC--------CeEEEEEcCCcccccCC--C
Confidence 357788888999888777777666677888888742 1111 112222 35777776654332211 0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCc
Q 012652 78 PGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM 117 (459)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~ 117 (459)
...- ...+...++...+.+.+ .++|+||.|-..
T Consensus 74 ~~~~----~~~~~~~~~~a~~~i~~---~~~dlvILDEi~ 106 (172)
T PF02572_consen 74 EEED----RAAAREGLEEAKEAISS---GEYDLVILDEIN 106 (172)
T ss_dssp HHHH----HHHHHHHHHHHHHHTT----TT-SEEEEETHH
T ss_pred cHHH----HHHHHHHHHHHHHHHhC---CCCCEEEEcchH
Confidence 1111 23344555555566555 899999999743
No 341
>PRK06904 replicative DNA helicase; Validated
Probab=54.16 E-value=71 Score=32.15 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAK-HGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~v~ 47 (459)
|++-..|+.|=....+.+|...+. .|+.|.|++.+...+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 445668888999999999998874 599999999876665544
No 342
>PRK07004 replicative DNA helicase; Provisional
Probab=53.97 E-value=69 Score=32.14 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++...|+.|=..-.+.+|..++ +.|+.|.|++.+-..+.+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 45666788899999999999886 4699999999876665543
No 343
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=53.95 E-value=21 Score=33.99 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
++||.|+..+.-| ..+|..|.++||+|+++..+...+.+.+
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELRA 42 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHHh
Confidence 4689999877666 4578889999999999987543334433
No 344
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.67 E-value=22 Score=33.16 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=39.8
Q ss_pred hhhcCCCccceeeccCchhHHHhhh----cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHH
Q 012652 344 RVLSHPSIACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQV 419 (459)
Q Consensus 344 ~iL~~~~~~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 419 (459)
++...+++ +|+=||-||+..++. .++|++.+ |.-+ +|-. ..++++++.+++.++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgi--------n~G~------lGFl------~~~~~~~~~~~l~~i 116 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGI--------NRGN------LGFL------TDLDPDNALQQLSDV 116 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEE--------ECCC------CCcc------cccCHHHHHHHHHHH
Confidence 34445666 999999999999975 36788776 2211 1221 345688999999999
Q ss_pred hCCH
Q 012652 420 LGDQ 423 (459)
Q Consensus 420 l~~~ 423 (459)
+++.
T Consensus 117 ~~g~ 120 (292)
T PRK03378 117 LEGH 120 (292)
T ss_pred HcCC
Confidence 8653
No 345
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=53.51 E-value=27 Score=32.57 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCEEEEEeC
Q 012652 1 MSSPHILVFSTPAQG-H---VIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 1 m~~~~il~~~~~~~g-H---~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
|++.||+++..+..+ | +.....++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 888999988865443 2 45777899999999999988854
No 346
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=53.37 E-value=1.9e+02 Score=27.50 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchH--HHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHH
Q 012652 18 IPLLEFSQCLAKHGFRVTFVNSEYNHK--RVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEE 95 (459)
Q Consensus 18 ~p~~~La~~L~~rGh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (459)
.-...|++.|.++|.+|.+++.+...+ .+++.. . .. ... . ...+ ...-.+.+
T Consensus 200 e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~-~------~~---------~~~----~----~~~l--~g~~sL~e 253 (344)
T TIGR02201 200 DRFSALIDALHARGYEVVLTSGPDKDELAMVNEIA-Q------GC---------QTP----R----VTSL--AGKLTLPQ 253 (344)
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHH-h------hC---------CCC----c----cccc--CCCCCHHH
Confidence 356789999988899999887654222 222210 0 00 000 0 0000 11223555
Q ss_pred HHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeC
Q 012652 96 LIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 96 l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~ 136 (459)
+...+ .+-|++|+.- ...+.+|..+|+|++.+..
T Consensus 254 l~ali-----~~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 254 LAALI-----DHARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHH-----HhCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 55555 3478999884 4679999999999998754
No 347
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=53.06 E-value=1.5e+02 Score=25.60 Aligned_cols=41 Identities=12% Similarity=0.438 Sum_probs=30.4
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 3 SPHILVFS--TPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 3 ~~~il~~~--~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
.+|++.++ -++.|=..-...||..|+++|++|.++-.+...
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 35655444 335588888999999999999999998655433
No 348
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=52.98 E-value=1.9e+02 Score=27.99 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCccceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCHHHHH
Q 012652 348 HPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQNFKA 427 (459)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 427 (459)
..+++++.-.+-......-+...++.++--.+.-=|..++++.. .-++..+|++-..+=+ ..||+
T Consensus 252 gERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva-------------~IL~~p~Lra~W~~El--~~Mr~ 316 (396)
T COG1448 252 GERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVA-------------TILNNPELRAEWEQEL--EEMRQ 316 (396)
T ss_pred hhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHH-------------HHhCCHHHHHHHHHHH--HHHHH
Confidence 34566666666666666666666666666666666656655543 2234555655555444 37999
Q ss_pred HHHHHHHHHHhhhhcCC
Q 012652 428 RALELKEITMSSVREGG 444 (459)
Q Consensus 428 ~a~~l~~~~~~~~~~~g 444 (459)
+..+|+..+.+....-+
T Consensus 317 Ri~~mR~~lv~~L~~~~ 333 (396)
T COG1448 317 RILEMRQALVDALKALG 333 (396)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999998877633
No 349
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=52.86 E-value=52 Score=31.45 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=58.0
Q ss_pred EEEEEcCCCcc---C--HHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChH
Q 012652 5 HILVFSTPAQG---H--VIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPG 79 (459)
Q Consensus 5 ~il~~~~~~~g---H--~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (459)
-|+|.|..+.| + ...+.+|++.|.++|++|.+++++...+..++-.. ... ......
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~-------~~~-----~~~~~~------- 242 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA-------ALN-----TEQQAW------- 242 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH-------hcc-----cccccc-------
Confidence 35566643222 1 23578999999888999999887765554433210 000 000000
Q ss_pred HHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeC
Q 012652 80 KLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~ 136 (459)
...+. ..-.+.++...+ .+-|++|+.- .....+|..+|+|++.+..
T Consensus 243 --~~~l~--g~~sL~el~ali-----~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 243 --CRNLA--GETQLEQAVILI-----AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred --eeecc--CCCCHHHHHHHH-----HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 00000 111245555554 3478999875 4678999999999998754
No 350
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=52.85 E-value=1.1e+02 Score=23.89 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=55.4
Q ss_pred cCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHh-hhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccH
Q 012652 15 GHVIPLLEFSQCLAKH--GFRVTFVNSEYNHKRVMK-SLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPG 91 (459)
Q Consensus 15 gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (459)
++=.-++.+++.|.+. |+++. .+....+.+++ . |+.+..+ ..-+.+ .++
T Consensus 9 ~dK~~~~~~a~~~~~ll~Gf~i~--AT~gTa~~L~~~~---------Gi~v~~v-k~~~~~----------------g~~ 60 (115)
T cd01422 9 NKKEDLVEFVKQHQELLSRHRLV--ATGTTGLLIQEAT---------GLTVNRM-KSGPLG----------------GDQ 60 (115)
T ss_pred cchHHHHHHHHHHHHHhcCCEEE--EechHHHHHHHhh---------CCcEEEE-ecCCCC----------------chh
Confidence 4556778999999998 99984 45577777777 5 6766655 211111 123
Q ss_pred HHHHHHHHHhCCCCCCccEEEeCCC--c-----c---hHHHHHHHcCCceEEE
Q 012652 92 KLEELIEEINGRDDEKIDCFISDGF--M-----G---WSMEVAEKMKLRRAVI 134 (459)
Q Consensus 92 ~~~~l~~~l~~~~~~~pDlvi~D~~--~-----~---~~~~~A~~~giP~i~~ 134 (459)
.+.+++.. .+.|+||.-+- . . .....|-..+||+++.
T Consensus 61 ~i~~~i~~------g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 61 QIGALIAE------GEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred HHHHHHHc------CceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 34444444 89999986643 1 1 2345688899999973
No 351
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.42 E-value=27 Score=32.61 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=28.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
|||+|+..++.| ..+|..|++.||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 478888777665 4578889999999999987333333433
No 352
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=52.03 E-value=31 Score=28.86 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=31.8
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 4 PHIL-VFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 4 ~~il-~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
++|+ |+.+-..|=..=+-+|.++|+++|++|..+=+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 5566 777788899999999999999999999998653
No 353
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.00 E-value=24 Score=33.15 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=40.3
Q ss_pred hhcCCCccceeeccCchhHHHhhhc----CCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHh
Q 012652 345 VLSHPSIACFLSHCGWNSTMEGVSN----GIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 345 iL~~~~~~~~I~HgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
+...+++ +|+=||-||+..|... ++|++.+ |.- .+|-. ..+..+++.+++.+++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGI--------N~G------~lGFL------~~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGV--------NLG------HVGFL------AEAEAEDLDEAVERVV 126 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEE--------ecC------CCcee------ccCCHHHHHHHHHHHH
Confidence 3345666 9999999999988664 7898887 322 12322 3456788999999998
Q ss_pred CCH
Q 012652 421 GDQ 423 (459)
Q Consensus 421 ~~~ 423 (459)
++.
T Consensus 127 ~g~ 129 (306)
T PRK03372 127 DRD 129 (306)
T ss_pred cCC
Confidence 654
No 354
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=51.90 E-value=1.8e+02 Score=26.22 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=29.0
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 5 HILVFS-TPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 5 ~il~~~-~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
.|++.+ -++-|=..=...||..|++.|++|..+=-+
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 344444 456699999999999999999999998654
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=51.89 E-value=22 Score=30.30 Aligned_cols=45 Identities=11% Similarity=0.340 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
..+++|+..++.|=.+=..++++++.++|+.|.|++.+.....++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457888888888888889999999999999999998866655554
No 356
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=51.48 E-value=1.6e+02 Score=27.23 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeC
Q 012652 90 PGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 90 ~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~ 136 (459)
.+.+.++++.+++ .+..+|+++.... .+-.+|+..|++.+.+.+
T Consensus 206 ~~~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 206 PKQLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 4456677777777 8899999998876 566799999999887554
No 357
>PRK11519 tyrosine kinase; Provisional
Probab=51.40 E-value=3.4e+02 Score=29.14 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=67.7
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhh-hcc-------C------------CCCCCe
Q 012652 3 SPHILVFST--PAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSL-EGK-------N------------YLGEQI 60 (459)
Q Consensus 3 ~~~il~~~~--~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~-~~~-------~------------~~~~~~ 60 (459)
+.|+++++. ++-|=..-...||..|++.|++|.++-.+-....+.... ... . ...+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 446665554 466888899999999999999999997653322222111 000 0 001222
Q ss_pred EEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc----hHHHHHHHcCCceEEEe
Q 012652 61 RLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG----WSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~----~~~~~A~~~giP~i~~~ 135 (459)
.+.+- +. ...+..+++ ....+.++++.++ .++|+||.|.-.. -+..++...+...+++-
T Consensus 605 ~~lp~--g~----~~~~~~ell------~s~~~~~ll~~l~----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 605 DLIPR--GQ----VPPNPSELL------MSERFAELVNWAS----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred EEEeC--CC----CCCCHHHHh------hHHHHHHHHHHHH----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 22221 11 112222221 2345778888876 4799999996533 25677888887766543
No 358
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=51.21 E-value=1.8e+02 Score=26.58 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeCc
Q 012652 89 MPGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 89 ~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~~ 137 (459)
..+.+.++.+.+++ .+..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 202 s~~~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 202 SPADLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred CHHHHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 34566777777777 8999999998766 5678999999999887644
No 359
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.19 E-value=1.5e+02 Score=25.02 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcc-hHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHH
Q 012652 20 LLEFSQCLAKHGFRVTFVNSEYN-HKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIE 98 (459)
Q Consensus 20 ~~~La~~L~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (459)
+..|.+...++|..|.+++.... .+.+.+... ..++++++.....+.. .....+++++
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~---~~yP~l~ivg~~~g~f------------------~~~~~~~i~~ 95 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR---RRYPGLRIVGYHHGYF------------------DEEEEEAIIN 95 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---HHCCCeEEEEecCCCC------------------ChhhHHHHHH
Confidence 34455555668899999987542 222222211 2235788776544322 2233455566
Q ss_pred HHhCCCCCCccEEEeCCCcc----hHHHHHHHcCCceEEEeCcchh
Q 012652 99 EINGRDDEKIDCFISDGFMG----WSMEVAEKMKLRRAVIWTSCAA 140 (459)
Q Consensus 99 ~l~~~~~~~pDlvi~D~~~~----~~~~~A~~~giP~i~~~~~~~~ 140 (459)
.+.+ .+||+|++....+ +.....+.++.+ +.+....++
T Consensus 96 ~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 96 RINA---SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 6665 8999999988777 566666777777 445554443
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.95 E-value=1.2e+02 Score=29.57 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=32.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK 44 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 44 (459)
|+|+...+.|=..-+..||..+.++|++|.+++.+.+..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 445555677999999999999999999999999887643
No 361
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=50.88 E-value=86 Score=32.40 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=51.5
Q ss_pred EeCCcccCCH-HHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccch-h---------hhhcC
Q 012652 280 AFGSHTVLDH-NQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQ-Q---------RVLSH 348 (459)
Q Consensus 280 s~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq-~---------~iL~~ 348 (459)
|.||.....+ ...+.+++.|+..|.+.++-+.+. ....+-+.+.+ .++++.+.-... . .+-..
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~----~~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~ 76 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGG----AILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGK 76 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCc----ccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCC
Confidence 3455433232 457778888888898888887665 11122222211 123443322111 1 12233
Q ss_pred CCccceeeccCch------hHHHhhhcCCceeccc
Q 012652 349 PSIACFLSHCGWN------STMEGVSNGIPFLCWP 377 (459)
Q Consensus 349 ~~~~~~I~HgG~~------s~~eal~~gvP~v~~P 377 (459)
..++++|.|-| .+.||...++|+|++.
T Consensus 77 --~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 --PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred --CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488887744 7889999999999985
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=50.87 E-value=1.4e+02 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
-|+++..++.|=..-+..||..|+.+|++|.++..+.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 355777778899999999999999999999999887643
No 363
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=50.45 E-value=64 Score=25.50 Aligned_cols=21 Identities=29% Similarity=0.129 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 012652 19 PLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 19 p~~~La~~L~~rGh~Vt~~~~ 39 (459)
.+-.+...|.++|++|++++-
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~ 33 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTL 33 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEEC
T ss_pred hhHHHHHHHHhcCCeEEEEEe
Confidence 444566678899999999874
No 364
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=50.36 E-value=1.1e+02 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC
Q 012652 17 VIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP 66 (459)
Q Consensus 17 ~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~ 66 (459)
-.-...+|+.|.+.|.++. ++....+.+++. |+.+..+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~ 48 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVS 48 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhh
Confidence 3457899999999999984 555788888887 77777664
No 365
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=50.32 E-value=1.2e+02 Score=29.85 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEE
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVI 134 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~ 134 (459)
.+||++|.+.. ...+|+++|||++..
T Consensus 355 ~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 78999999954 467899999999853
No 366
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=49.59 E-value=1.4e+02 Score=24.37 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|.+...++.|=...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777888999999999999999999999988653
No 367
>PRK05748 replicative DNA helicase; Provisional
Probab=49.58 E-value=93 Score=31.06 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLA-KHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~v~ 47 (459)
+++-..|+.|=..-.+.+|...+ +.|+.|.|++.+...+.+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 55667888899999999999886 5699999999877665543
No 368
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=49.45 E-value=21 Score=36.48 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=47.9
Q ss_pred cchhhhhcCCCccceeeccC-c-hhHHHhhhcCCceeccccc-----cccchhhhhhhceeeeeeeeecCCCCcccHHHH
Q 012652 340 APQQRVLSHPSIACFLSHCG-W-NSTMEGVSNGIPFLCWPYF-----VDQFLNESYICDIWKVGLKLDKDESGIITGEEI 412 (459)
Q Consensus 340 vpq~~iL~~~~~~~~I~HgG-~-~s~~eal~~gvP~v~~P~~-----~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l 412 (459)
+++.+++.-|++++|-|.=- | -|-+||+..|||.|..=+. ..+... .. .. .|+-|.-+ ...+.++.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~-~~-~GV~VvdR----~~~n~~e~ 533 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DP-EE-YGVYVVDR----RDKNYDES 533 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HH-GG-GTEEEE-S----SSS-HHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cC-cC-CcEEEEeC----CCCCHHHH
Confidence 47788999999977666321 2 3889999999999987653 222222 11 23 37776555 34455555
Q ss_pred HHHHHHHhCC----H-----HHHHHHHHHHHH
Q 012652 413 SNKLVQVLGD----Q-----NFKARALELKEI 435 (459)
Q Consensus 413 ~~~i~~ll~~----~-----~~~~~a~~l~~~ 435 (459)
.+.+...|.+ . ..|++++++++.
T Consensus 534 v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 534 VNQLADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5555554432 1 356666665554
No 369
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=49.37 E-value=25 Score=32.79 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=28.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC-CcchHHHHh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS-EYNHKRVMK 48 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~-~~~~~~v~~ 48 (459)
|||+|+..+.-| ..+|..|.+.||+|+++.. +...+.+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence 478888776655 5678889999999999987 333334433
No 370
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=49.21 E-value=49 Score=31.42 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=29.2
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 8 VFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 8 ~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
=++.++.|=.--...|++.|.++|++|.+++-..
T Consensus 42 NltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 42 NLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred ccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 3457788999899999999999999999998744
No 371
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=48.98 E-value=51 Score=29.44 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=34.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
-+++...++.|-..-..+++.+..++|..|.|++.......+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 456777888899999999988887899999999987654443
No 372
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=48.88 E-value=2.3e+02 Score=27.23 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCc-cCHHHHHHHHHHHHhCC--CEEEEEeCCcchHH----HHhhhhccCCCCCCeEEEecCCCCCCCCC
Q 012652 2 SSPHILVFSTPAQ-GHVIPLLEFSQCLAKHG--FRVTFVNSEYNHKR----VMKSLEGKNYLGEQIRLVSIPDGMEPWEE 74 (459)
Q Consensus 2 ~~~~il~~~~~~~-gH~~p~~~La~~L~~rG--h~Vt~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 74 (459)
++++++..|..-. |. .-.-.+.+.+.+.| .+|.+++.+...+. +.+.... .+ .+..+. .+
T Consensus 3 ~~~~~~~~p~~i~~G~-g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~-----~~-~~~~~~---~~--- 69 (350)
T PRK00843 3 EKSHWIQLPRDVVVGH-GVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLED-----AG-DVEVVI---VD--- 69 (350)
T ss_pred CCceEEeCCCeEEECC-CHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHh-----cC-CeeEEe---CC---
Confidence 4677777765433 32 23456777777665 58888887654433 2222110 11 221110 00
Q ss_pred CCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc---hHHHHHHHcCCceEEEeCcc
Q 012652 75 RTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMG---WSMEVAEKMKLRRAVIWTSC 138 (459)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~~~ 138 (459)
......++++++.+++ .++|+||+=..-. .+-.+|...|+|+|.+-++.
T Consensus 70 ------------~~t~~~v~~~~~~~~~---~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 70 ------------EATMEEVEKVEEKAKD---VNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred ------------CCCHHHHHHHHHHhhc---cCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCc
Confidence 1123456666666666 6789998544322 45566788899999876664
No 373
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=48.82 E-value=33 Score=30.37 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=29.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCE-EEEEeC
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFR-VTFVNS 39 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~-Vt~~~~ 39 (459)
=|+|+..|..|-......|.+.|+++||+ +..+..
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 47888899999999999999999999976 444443
No 374
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=48.28 E-value=1.2e+02 Score=29.35 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEE--EecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHH
Q 012652 20 LLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRL--VSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELI 97 (459)
Q Consensus 20 ~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (459)
.-.+++.|.+.|.++.+++.+.......+...... ...++.+ ..+. .. . ....++++.
T Consensus 18 ~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l-~~~~~~~~~~~~~----~e-p--------------~~~~v~~~~ 77 (366)
T PRK09423 18 LARLGEYLKPLGKRALVIADEFVLGIVGDRVEASL-KEAGLTVVFEVFN----GE-C--------------SDNEIDRLV 77 (366)
T ss_pred HHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHH-HhCCCeEEEEEeC----CC-C--------------CHHHHHHHH
Confidence 45677788877888988886543322111111000 0013332 2221 11 0 112344555
Q ss_pred HHHhCCCCCCccEEEeCCCcc---hHHHHHHHcCCceEEEeCcc
Q 012652 98 EEINGRDDEKIDCFISDGFMG---WSMEVAEKMKLRRAVIWTSC 138 (459)
Q Consensus 98 ~~l~~~~~~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~~~ 138 (459)
+.+++ .++|+||.=.... .+-.+|..+++|++.+-++.
T Consensus 78 ~~~~~---~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 78 AIAEE---NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHh---cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 55555 7899998655433 45666777899999876653
No 375
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.13 E-value=52 Score=31.75 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=35.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKR 45 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~ 45 (459)
-|+|+..-+.|-...+..+|..+.++|+.+.+++.+-|..-
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 35577777999999999999999999999999998766543
No 376
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.98 E-value=1.7e+02 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=35.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
.-+++...++.|-..-..+++.+-.++|..|.|++.....+.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~ 65 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVR 65 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHH
Confidence 34677888899999999998877668899999999877655543
No 377
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=47.38 E-value=2.2e+02 Score=25.88 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=36.1
Q ss_pred CCEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 3 SPHILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 3 ~~~il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
..|..|+..- +-|-..-...||-.|+.-+|.|.++++++.+..-
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 4577777754 5599999999999999999999999998766443
No 378
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=47.23 E-value=1.9e+02 Score=25.06 Aligned_cols=142 Identities=12% Similarity=0.088 Sum_probs=90.0
Q ss_pred HHHHhccCCCCeEEEEEeCCcccCCHHH-HHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccch
Q 012652 264 CLKWLDQQQPKSVIYVAFGSHTVLDHNQ-FQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQ 342 (459)
Q Consensus 264 ~~~~l~~~~~~~~v~vs~Gs~~~~~~~~-~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq 342 (459)
..++-.+.+ =|..++.-... .+++. =+.+.+.+...+..+|+..+.- .-+.+.|.+..+.++.
T Consensus 42 ~lerA~~~g-Ipt~~~~~k~~--~~r~~~d~~l~~~l~~~~~dlvvLAGyM------rIL~~~fl~~~~grIl------- 105 (200)
T COG0299 42 ALERAAKAG-IPTVVLDRKEF--PSREAFDRALVEALDEYGPDLVVLAGYM------RILGPEFLSRFEGRIL------- 105 (200)
T ss_pred HHHHHHHcC-CCEEEeccccC--CCHHHHHHHHHHHHHhcCCCEEEEcchH------HHcCHHHHHHhhcceE-------
Confidence 344544443 34555555432 24444 4458888988888887776654 4455676665544322
Q ss_pred hhhhcCCCccceeeccCchhHHHhhhcCCceeccccc--cccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHh
Q 012652 343 QRVLSHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYF--VDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 343 ~~iL~~~~~~~~I~HgG~~s~~eal~~gvP~v~~P~~--~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
=-||++ .=.++|..+..+|+.+|+..-.+-.+ .+..+-+-.+.++ -+- +. ..-|.+.|.+.|.+.-
T Consensus 106 ---NIHPSL--LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~-~Vp--v~----~~Dt~etl~~RV~~~E 173 (200)
T COG0299 106 ---NIHPSL--LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQA-AVP--VL----PGDTAETLEARVLEQE 173 (200)
T ss_pred ---ecCccc--ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEE-eee--ec----CCCCHHHHHHHHHHHH
Confidence 236777 77889999999999999998666644 4666666666552 333 32 2338999998888752
Q ss_pred CCHHHHHHHHHHHH
Q 012652 421 GDQNFKARALELKE 434 (459)
Q Consensus 421 ~~~~~~~~a~~l~~ 434 (459)
..-|-+..+.+.+
T Consensus 174 -h~lyp~~v~~~~~ 186 (200)
T COG0299 174 -HRLYPLAVKLLAE 186 (200)
T ss_pred -HHHHHHHHHHHHh
Confidence 3456665555544
No 379
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.02 E-value=30 Score=31.65 Aligned_cols=53 Identities=9% Similarity=0.196 Sum_probs=36.5
Q ss_pred CCccceeeccCchhHHHhhhc-----CCceeccccccccchhh-hhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 349 PSIACFLSHCGWNSTMEGVSN-----GIPFLCWPYFVDQFLNE-SYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~~-----gvP~v~~P~~~DQ~~na-~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
+++ +|+=||-||+..|+.. .+|++.+ |. - .+|- + ..++.+++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgI--------n~~G------~lGF-L-----~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGI--------STKD------QLGF-Y-----CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeE--------ecCC------CCeE-c-----ccCCHHHHHHHHHHHHcC
Confidence 456 9999999999999874 5666555 21 1 1121 1 345678999999998865
Q ss_pred H
Q 012652 423 Q 423 (459)
Q Consensus 423 ~ 423 (459)
+
T Consensus 98 ~ 98 (264)
T PRK03501 98 E 98 (264)
T ss_pred C
Confidence 4
No 380
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=46.90 E-value=80 Score=28.61 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=49.0
Q ss_pred CCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccE
Q 012652 31 GFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDC 110 (459)
Q Consensus 31 Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDl 110 (459)
.....+..++.+.-..+.. |++.......-+..+ ...+.+.++.+.+++ .+..+
T Consensus 149 ~~~~~v~~h~~~~Y~~~~~---------gl~~~~~~~~~~~~~--------------ps~~~l~~l~~~ik~---~~v~~ 202 (256)
T PF01297_consen 149 PGRPVVVYHDAFQYFAKRY---------GLKVIGVIEISPGEE--------------PSPKDLAELIKLIKE---NKVKC 202 (256)
T ss_dssp SGGEEEEEESTTHHHHHHT---------T-EEEEEESSSSSSS--------------S-HHHHHHHHHHHHH---TT-SE
T ss_pred cCCeEEEEChHHHHHHHhc---------CCceeeeeccccccC--------------CCHHHHHHHHHHhhh---cCCcE
Confidence 3355566677777777766 777665441111111 123456666666666 89999
Q ss_pred EEeCCCcc--hHHHHHHHcCCceEEEeCc
Q 012652 111 FISDGFMG--WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 111 vi~D~~~~--~~~~~A~~~giP~i~~~~~ 137 (459)
|+++.... .+..+|+..|+|.+.+.+.
T Consensus 203 i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 203 IFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp EEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred EEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 99998766 4678899999999775443
No 381
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.74 E-value=1.5e+02 Score=23.79 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=34.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
+.||++-..++.+|-...--++..|...|++|.......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~ 40 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQ 40 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 578999998999999999999999999999999988643
No 382
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=46.68 E-value=2.3e+02 Score=25.86 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=28.6
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 3 SPHILVFST--PAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 3 ~~~il~~~~--~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
..|++.++. ++.|=..-...||..|++.|++|.++-.+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 345554443 35588888899999999999999999654
No 383
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=46.47 E-value=2.2e+02 Score=25.59 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|+|+..|+.|=..-...|++.|...|.+|.++..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 678888999999999999999998999998886543
No 384
>PHA02754 hypothetical protein; Provisional
Probab=46.18 E-value=33 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhh
Q 012652 415 KLVQVLGDQNFKARALELKEITMSS 439 (459)
Q Consensus 415 ~i~~ll~~~~~~~~a~~l~~~~~~~ 439 (459)
.|.+++-|++|++..+++++++.++
T Consensus 6 Ei~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 3456666889999999999999875
No 385
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=46.17 E-value=39 Score=32.88 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=30.4
Q ss_pred eeeccCchhHHHhhhcCCceeccccc--cccchhhhhhhceeeeeeeeec
Q 012652 354 FLSHCGWNSTMEGVSNGIPFLCWPYF--VDQFLNESYICDIWKVGLKLDK 401 (459)
Q Consensus 354 ~I~HgG~~s~~eal~~gvP~v~~P~~--~DQ~~na~rv~~~~G~G~~~~~ 401 (459)
..|.||..-+.|-=.+|+|+|.+-.. .-.-.=|.|+.. ++++-...
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~Pl 395 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHPL 395 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCCC
Confidence 56667777777777899999987432 223333778775 77765544
No 386
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=46.03 E-value=39 Score=32.88 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=31.6
Q ss_pred HhccHHHHHHHHHHhCCCCCCccEEEeCCCcchH----------HHHHHHcCCceEEEe
Q 012652 87 QVMPGKLEELIEEINGRDDEKIDCFISDGFMGWS----------MEVAEKMKLRRAVIW 135 (459)
Q Consensus 87 ~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~----------~~~A~~~giP~i~~~ 135 (459)
+..+...+++++.+++ .+||++|+.+-+-.+ ..+.+++|||.++-.
T Consensus 59 en~eea~~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 59 ENLEEAKAKVLEMIKG---ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hCHHHHHHHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3344555666666666 999999999876532 234567999999743
No 387
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=45.80 E-value=2.4e+02 Score=25.79 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCccEEEeCCCcc------hHHHHHHHcCCceEEEeC
Q 012652 91 GKLEELIEEINGRDDEKIDCFISDGFMG------WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 91 ~~~~~l~~~l~~~~~~~pDlvi~D~~~~------~~~~~A~~~giP~i~~~~ 136 (459)
..+.+.++. .++|+||+.--.. -+..+|+.+|+|++++..
T Consensus 101 ~~Laa~~~~------~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 101 KALAAAVKK------IGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHh------cCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 345555556 8999999654332 578999999999998543
No 388
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=45.74 E-value=63 Score=32.23 Aligned_cols=26 Identities=23% Similarity=0.060 Sum_probs=22.1
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEE
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVI 134 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~ 134 (459)
.+||++|... .+..+|+++|||++.+
T Consensus 386 ~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 386 LKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred cCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 7899999886 3577899999999874
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.59 E-value=2.1e+02 Score=28.33 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=32.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHH-HhCCCEEEEEeCCcchHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCL-AKHGFRVTFVNSEYNHKR 45 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L-~~rGh~Vt~~~~~~~~~~ 45 (459)
++|+..++.|=..-+..||..+ ..+|+.|.+++.+.+...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA 266 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence 5566666889999999999876 578999999998875543
No 390
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=45.52 E-value=33 Score=34.38 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=39.2
Q ss_pred cCCCccceeeccCchhHHHhhhc----CCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 347 SHPSIACFLSHCGWNSTMEGVSN----GIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 347 ~~~~~~~~I~HgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
..+|+ +|+=||-||++.|... ++|++.+ |.- .+|- + ..++.+++.++|.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G------~LGF-L-----t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMG------SLGF-M-----TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCC------Ccce-e-----cccCHHHHHHHHHHHHcC
Confidence 45566 9999999999998764 5677766 322 1333 2 345789999999999875
Q ss_pred H
Q 012652 423 Q 423 (459)
Q Consensus 423 ~ 423 (459)
+
T Consensus 319 ~ 319 (508)
T PLN02935 319 P 319 (508)
T ss_pred C
Confidence 4
No 391
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=45.49 E-value=1.6e+02 Score=28.28 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHHHH
Q 012652 21 LEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIEEI 100 (459)
Q Consensus 21 ~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 100 (459)
-.+.+.+.+.|.++.+++.+...+.+.+...... ...++.+..+... .....++++.+.+
T Consensus 13 ~~l~~~~~~~~~~~liv~d~~~~~~~~~~l~~~L-~~~~~~~~~~~~~-------------------p~~~~v~~~~~~~ 72 (347)
T cd08172 13 DELGELLKRFGKRPLIVTGPRSWAAAKPYLPESL-AAGEAFVLRYDGE-------------------CSEENIERLAAQA 72 (347)
T ss_pred HHHHHHHHHhCCeEEEEECHHHHHHHHHHHHHHH-hcCeEEEEEeCCC-------------------CCHHHHHHHHHHH
Confidence 3455556555888988887654433322221111 0113333322211 1234455566666
Q ss_pred hCCCCCCccEEEeCCCcc---hHHHHHHHcCCceEEEeCcch
Q 012652 101 NGRDDEKIDCFISDGFMG---WSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 101 ~~~~~~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~~~~ 139 (459)
++ .++|+||+=..-. .+-.+|..+++|++.+-++..
T Consensus 73 ~~---~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~g 111 (347)
T cd08172 73 KE---NGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTLAA 111 (347)
T ss_pred Hh---cCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCccc
Confidence 65 7899998654433 456667778999998776643
No 392
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=45.02 E-value=41 Score=31.34 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=34.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|||+|+.=++-|=..-...||..|+++|++|.++-.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 468888888889999999999999999999999976554
No 393
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.01 E-value=1e+02 Score=27.63 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHhCCCCCCccEEEeCCCcc---hHHHHHHHcCCceEE
Q 012652 90 PGKLEELIEEINGRDDEKIDCFISDGFMG---WSMEVAEKMKLRRAV 133 (459)
Q Consensus 90 ~~~~~~l~~~l~~~~~~~pDlvi~D~~~~---~~~~~A~~~giP~i~ 133 (459)
....+.+++.|+ +-++.+.|...+ -+..+|...|||++.
T Consensus 137 ~~aM~~~m~~Lk-----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK-----ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH-----HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 445667777774 478999998877 357889999999996
No 394
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=45.00 E-value=67 Score=26.81 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred hHHHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecc-cc
Q 012652 263 TCLKWLDQQQPKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGW-AP 341 (459)
Q Consensus 263 ~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~-vp 341 (459)
++-++|.+++ ...++ |. ..-....+.++..+.+.+++=++... ........+.....++ .+
T Consensus 22 ~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~----------l~~~~~~~~~~i~~~~~~~ 83 (159)
T TIGR00725 22 RLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDE----------DFAGNPYLTIKVKTGMNFA 83 (159)
T ss_pred HHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChh----------hccCCCCceEEEECCCcch
Q ss_pred hhhhhcCCCccceeeccCchhHHHh---hhcCCceecccccc
Q 012652 342 QQRVLSHPSIACFLSHCGWNSTMEG---VSNGIPFLCWPYFV 380 (459)
Q Consensus 342 q~~iL~~~~~~~~I~HgG~~s~~ea---l~~gvP~v~~P~~~ 380 (459)
-..++-..+-..++--||.||+-|. +.+++|+++++..+
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCC
No 395
>PRK13768 GTPase; Provisional
Probab=44.96 E-value=39 Score=30.74 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=30.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
.+++...++.|=..-...++..|..+|++|.++..+..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 35566666778888899999999999999999986543
No 396
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=44.83 E-value=37 Score=33.99 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
..||++...++ .-.+-...|.++|+++||+|.++.++....++...
T Consensus 70 ~k~IllgVtGs-IAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGG-IAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccH-HHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 45677665544 44568999999999999999999998887777643
No 397
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=44.81 E-value=51 Score=27.51 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=26.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEE
Q 012652 276 VIYVAFGSHTVLDHNQFQELALGLEICNRPFLWV 309 (459)
Q Consensus 276 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 309 (459)
.+|+++||....+...++..+.++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 6999999987777778899999998776533333
No 398
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=44.75 E-value=26 Score=30.65 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=61.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKV 85 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (459)
|++..+|+.|-....-.||++|..++|+|...+.+...-.. . .+.++ -..+..+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~---------------~---DEslp------i~ke~yres 59 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL---------------W---DESLP------ILKEVYRES 59 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee---------------c---ccccc------hHHHHHHHH
Confidence 55667899999999999999999999999877663322111 0 00000 011111111
Q ss_pred HHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc-h-----HHHHHHHcCCceEEEeCcch
Q 012652 86 LQVMPGKLEELIEEINGRDDEKIDCFISDGFMG-W-----SMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 86 ~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~-~-----~~~~A~~~giP~i~~~~~~~ 139 (459)
. -....+.+... .+--+||+|..-. - ....|..+..++.++..-.+
T Consensus 60 ~--~ks~~rlldSa------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~p 111 (261)
T COG4088 60 F--LKSVERLLDSA------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTP 111 (261)
T ss_pred H--HHHHHHHHHHH------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccC
Confidence 1 11223333333 2335899998754 2 35778999999888766544
No 399
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=44.50 E-value=20 Score=31.10 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCccEEE-eCCCcc-hHHHHHHHcCCceEEEeCcchh
Q 012652 106 EKIDCFI-SDGFMG-WSMEVAEKMKLRRAVIWTSCAA 140 (459)
Q Consensus 106 ~~pDlvi-~D~~~~-~~~~~A~~~giP~i~~~~~~~~ 140 (459)
..||+|| .|+..- -+..=|.++|||+|.+..+..-
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~d 143 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNP 143 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCC
Confidence 5699875 565544 6777799999999999887664
No 400
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=44.32 E-value=51 Score=32.54 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEE
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVI 134 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~ 134 (459)
.+||+||..... ..+|+++|||++.+
T Consensus 357 ~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 357 LKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred cCCCEEEecCcc---chhhhhcCCCEEec
Confidence 789999998643 46899999999875
No 401
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=44.30 E-value=1.3e+02 Score=28.23 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
.|+|...++.|=..-+..|+..|.++|+.|.++..+..
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45566677889999999999999999999999987644
No 402
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=44.18 E-value=65 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
|+..||+++|..+.|--.-.-.+-+.+.++|.++.+...
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 567799999977664223335556666678888776554
No 403
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=44.17 E-value=3.9e+02 Score=27.78 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=48.7
Q ss_pred cceeeccCch----hHHHhhhcCCceecccccccc--chhh-hhhhcee--ee--eeeeecCCCCcccHHHHHHHHHHHh
Q 012652 352 ACFLSHCGWN----STMEGVSNGIPFLCWPYFVDQ--FLNE-SYICDIW--KV--GLKLDKDESGIITGEEISNKLVQVL 420 (459)
Q Consensus 352 ~~~I~HgG~~----s~~eal~~gvP~v~~P~~~DQ--~~na-~rv~~~~--G~--G~~~~~~~~~~~~~~~l~~~i~~ll 420 (459)
++||.=.|.- ++..++ .-+|+|.+|....- -..+ .-+.+ + |+ +..- + .+..++..++-.|-. +
T Consensus 467 ~v~i~~ag~~~~l~~~~a~~-t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~-i--~~~~~aa~~a~~i~~-~ 540 (577)
T PLN02948 467 QVIIAGAGGAAHLPGMVASM-TPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVA-I--GNATNAGLLAVRMLG-A 540 (577)
T ss_pred CEEEEEcCccccchHHHhhc-cCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEe-c--CChHHHHHHHHHHHh-c
Confidence 3488887753 333333 36899999985321 1111 11223 4 63 3222 2 144455555544433 3
Q ss_pred CCHHHHHHHHHHHHHHHhhhhc
Q 012652 421 GDQNFKARALELKEITMSSVRE 442 (459)
Q Consensus 421 ~~~~~~~~a~~l~~~~~~~~~~ 442 (459)
.|++++++.+..++.+++.+..
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 541 SDPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999887553
No 404
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=44.10 E-value=1.5e+02 Score=28.30 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchHH--HHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHH
Q 012652 19 PLLEFSQCLAKHGFRVTFVNSEYNHKR--VMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEEL 96 (459)
Q Consensus 19 p~~~La~~L~~rGh~Vt~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (459)
-..+|++.|.++|++|.+++.+...+. .++-. . .. ... . ...+ ...-.+.++
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~-~------~~---------~~~-~-------~~~l--~g~~sL~el 256 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIA-Q------GC---------QTP-P-------VTAL--AGKTTFPEL 256 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHH-H------hc---------CCC-c-------cccc--cCCCCHHHH
Confidence 567899999888999988876543222 11110 0 00 000 0 0000 111235555
Q ss_pred HHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeC
Q 012652 97 IEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 97 ~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~ 136 (459)
...+ .+-|++|+.- .....+|..+|+|++.+..
T Consensus 257 ~ali-----~~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 257 GALI-----DHAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred HHHH-----HhCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 5555 3478999885 4678999999999998753
No 405
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=43.91 E-value=22 Score=32.11 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=25.0
Q ss_pred EEEEEcC---C---CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 5 HILVFST---P---AQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 5 ~il~~~~---~---~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
||++++. | ..|=-.-.-.|+++|+++||+|+++++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 5666652 2 22444567789999999999999999855
No 406
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.76 E-value=39 Score=31.06 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=37.8
Q ss_pred CCCccceeeccCchhHHHhhhc-CCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 348 HPSIACFLSHCGWNSTMEGVSN-GIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~~-gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
.+++ +|+=||-||+..++.. .+|++.+ |.-+ +|-. ..++.+++.+++.+++++.
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGI--------N~G~------lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGI--------NMGG------LGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEE--------ECCC------CccC------cccCHHHHHHHHHHHHcCC
Confidence 4556 9999999999988873 5577665 2221 1221 3457899999999998753
No 407
>PRK06835 DNA replication protein DnaC; Validated
Probab=42.89 E-value=38 Score=32.21 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=35.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVM 47 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~ 47 (459)
..++|+..++.|=.+=+.++|++|.++|+.|.|++.......+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 45778877777777778899999999999999999876655553
No 408
>PRK00784 cobyric acid synthase; Provisional
Probab=42.70 E-value=1.4e+02 Score=30.23 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=27.4
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 5 HILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 5 ~il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
.+++.... ..|=..-+..|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35555444 459999999999999999999987744
No 409
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=42.44 E-value=58 Score=30.74 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCEEEEE-eCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHH
Q 012652 19 PLLEFSQCLAKHGFRVTFV-NSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELI 97 (459)
Q Consensus 19 p~~~La~~L~~rGh~Vt~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (459)
...+|++.|.++|.+|.+. +++...+..++.. . ..... .+. ..-.+.++.
T Consensus 198 ~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~-~------~~~~~--------------------~l~--g~~sL~ela 248 (322)
T PRK10964 198 HWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLA-E------GFPYV--------------------EVL--PKLSLEQVA 248 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHH-c------cCCcc--------------------eec--CCCCHHHHH
Confidence 4789999999889998876 4443333332220 0 00000 000 111344555
Q ss_pred HHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeC
Q 012652 98 EEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 98 ~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~ 136 (459)
..+ .+-|++|+.- .....+|..+|+|++.++.
T Consensus 249 ali-----~~a~l~I~nD--SGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 249 RVL-----AGAKAVVSVD--TGLSHLTAALDRPNITLYG 280 (322)
T ss_pred HHH-----HhCCEEEecC--CcHHHHHHHhCCCEEEEEC
Confidence 555 3479999885 4678999999999998764
No 410
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=42.41 E-value=1.4e+02 Score=26.78 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=30.3
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012652 6 ILVFS-TPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK 44 (459)
Q Consensus 6 il~~~-~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 44 (459)
|.|.. =|+.|=..-.+.||..|+++|++|.++-.+....
T Consensus 4 I~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred EEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 33444 3455888899999999999999999998766544
No 411
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=42.39 E-value=42 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 21 LEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 21 ~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
.-+|..|.+.||+|++++.....+.+.+.
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 34789999999999999987744556655
No 412
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=42.31 E-value=81 Score=28.00 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=20.2
Q ss_pred CEEEEEcCCCcc--CHHHHHHHHHHHHh
Q 012652 4 PHILVFSTPAQG--HVIPLLEFSQCLAK 29 (459)
Q Consensus 4 ~~il~~~~~~~g--H~~p~~~La~~L~~ 29 (459)
+|||+..|.-.| -+||...++++|..
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 678888876443 48999999999964
No 413
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=42.31 E-value=67 Score=31.74 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEe
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKH-GFRVTFVN 38 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~r-Gh~Vt~~~ 38 (459)
||||++..++..| +|++.|++. |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 5899999887777 499999886 54444443
No 414
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=42.30 E-value=1.2e+02 Score=26.16 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=40.4
Q ss_pred E-EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHhhhhccCCCCCCeEEEecCCC
Q 012652 5 H-ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY---NHKRVMKSLEGKNYLGEQIRLVSIPDG 68 (459)
Q Consensus 5 ~-il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~i~~~ 68 (459)
| |+|+..++.-|-.-...++++|++.|.+|.+++-.. +.++++... ++.....+-++..+|.+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~-~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFI-DAVNGKDGSHLVSVPPG 175 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHH-HHhcCCCCceEEEeCCC
Confidence 5 557777777777777789999999998888887543 334443322 22233345667776654
No 415
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=42.28 E-value=77 Score=29.97 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=30.1
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 8 VFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 8 ~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
=++.++.|-.--.+.||++|.+||..|-+++-..-
T Consensus 54 NltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 54 NLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred cEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 35578889999999999999999999999987443
No 416
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=42.22 E-value=83 Score=27.10 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=46.9
Q ss_pred hCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCc
Q 012652 29 KHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKI 108 (459)
Q Consensus 29 ~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p 108 (459)
..|+++++.+.+.-.+.+.+.. |+++...+..+++.-...+.............+...++++.|.+..+..|
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~~--------G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~ 78 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAEM--------GLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGEDSFP 78 (209)
T ss_pred hcCcEEEEecCCchHHHHHHHc--------CCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 4688999998766555554442 67777666555544222223333444555567778889999886321346
Q ss_pred cEEEeC
Q 012652 109 DCFISD 114 (459)
Q Consensus 109 Dlvi~D 114 (459)
|.+++-
T Consensus 79 ~~vi~a 84 (209)
T KOG1509|consen 79 DVVISA 84 (209)
T ss_pred cccccc
Confidence 666543
No 417
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=42.20 E-value=1.1e+02 Score=26.87 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=20.1
Q ss_pred CEEEEEcCCCc-c-CHHHHHHHHHHHHh
Q 012652 4 PHILVFSTPAQ-G-HVIPLLEFSQCLAK 29 (459)
Q Consensus 4 ~~il~~~~~~~-g-H~~p~~~La~~L~~ 29 (459)
|+||+..|.-. | -.||...++++|.+
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 46888887655 3 48899999999965
No 418
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=42.19 E-value=43 Score=30.58 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|.|.+..=++-|-..-...||..|+++|++|.++=.+.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46777776777999999999999999999999986553
No 419
>PLN02939 transferase, transferring glycosyl groups
Probab=42.16 E-value=49 Score=36.14 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCEEEEEcC---C---CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 3 SPHILVFST---P---AQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 3 ~~~il~~~~---~---~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
++||+|++. | ..|=-.-.-+|.++|++.||+|.++++..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 589998872 2 22444566789999999999999999854
No 420
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=42.12 E-value=1.7e+02 Score=28.49 Aligned_cols=88 Identities=20% Similarity=0.186 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHH
Q 012652 16 HVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEE 95 (459)
Q Consensus 16 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (459)
+-.....|++-|.+.|-+|..+........-.+....-... ...... ...-...+++
T Consensus 279 ~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~-~~~~v~----------------------~~~~~~~~~~ 335 (398)
T PF00148_consen 279 DPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEE-SDPEVI----------------------IDPDPEEIEE 335 (398)
T ss_dssp SHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHT-TCSEEE----------------------ESCBHHHHHH
T ss_pred CchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhC-CCcEEE----------------------eCCCHHHHHH
Confidence 34667788888888898888887654432222110000000 000000 0001223555
Q ss_pred HHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 96 LIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 96 l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
+++. .+||+++.+.. ...+|+++++|++.+.
T Consensus 336 ~l~~------~~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 336 LLEE------LKPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp HHHH------HT-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred HHHh------cCCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 6666 78999999953 6777899999988743
No 421
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=42.06 E-value=4.2e+02 Score=28.65 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=66.0
Q ss_pred hhhcCCCccceeec-----cCchhHHHhhhcCCceecccc-ccccchhhhhhhceeeeeeee-----ecCCCCcccHHHH
Q 012652 344 RVLSHPSIACFLSH-----CGWNSTMEGVSNGIPFLCWPY-FVDQFLNESYICDIWKVGLKL-----DKDESGIITGEEI 412 (459)
Q Consensus 344 ~iL~~~~~~~~I~H-----gG~~s~~eal~~gvP~v~~P~-~~DQ~~na~rv~~~~G~G~~~-----~~~~~~~~~~~~l 412 (459)
.|.+-+|+-+..+. ||.+.+..++ +|++.+.+-- +.+...++. -|-++.- +.+..+..+++.|
T Consensus 562 ~LvaG~DvwLn~prrp~EAsGTSgMKA~~-NG~LnlSvlDGww~E~~~g~-----nGwaig~~~~~~~~~~~d~~da~~L 635 (778)
T cd04299 562 HLVQGVDVWLNTPRRPLEASGTSGMKAAL-NGGLNLSVLDGWWDEGYDGE-----NGWAIGDGDEYEDDEYQDAEEAEAL 635 (778)
T ss_pred HHHhhhhhcccCCCCCCCCCccchHHHHH-cCCeeeecccCccccccCCC-----CceEeCCCccccChhhcchhhHHHH
Confidence 37788888778888 8887766655 9999998876 222222331 1222211 1111344778888
Q ss_pred HHHHHHHhCCHHHHHH-----HHHHHHHHHhhhhc---CCChHHHHHHHHHHH
Q 012652 413 SNKLVQVLGDQNFKAR-----ALELKEITMSSVRE---GGSSYKTFQNFLEWV 457 (459)
Q Consensus 413 ~~~i~~ll~~~~~~~~-----a~~l~~~~~~~~~~---~g~~~~~~~~~~~~~ 457 (459)
.+.+.+.+- |-|.++ -.+|.+.+++++.. .-++.+-+++.++.+
T Consensus 636 y~~Le~~i~-p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 636 YDLLENEVI-PLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred HHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 888865442 445443 44577777766654 667888888777653
No 422
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=41.98 E-value=76 Score=31.55 Aligned_cols=32 Identities=6% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
.+|||++..+++.| +|+..|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 46999988888777 578889888988877754
No 423
>PRK04940 hypothetical protein; Provisional
Probab=41.85 E-value=67 Score=27.46 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=26.6
Q ss_pred CccEEEeCCCcc-hHHHHHHHcCCceEEEeCcch
Q 012652 107 KIDCFISDGFMG-WSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 107 ~pDlvi~D~~~~-~~~~~A~~~giP~i~~~~~~~ 139 (459)
++.+||...+-- ++..+|+++|+|.|.++|..-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 567888776643 889999999999999987644
No 424
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=41.80 E-value=62 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
||++..-++.|=......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888888999999999999999999999998765
No 425
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=41.67 E-value=85 Score=30.97 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK 44 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 44 (459)
+||+++..+.. ...|++++++-|+.++++..+.+..
T Consensus 1 ~kiliiG~G~~-----~~~l~~~~~~~~~~~~~~~~~~~~~ 36 (423)
T TIGR00877 1 MKVLVIGNGGR-----EHALAWKLAQSPLVKYVYVAPGNAG 36 (423)
T ss_pred CEEEEECCChH-----HHHHHHHHHhCCCccEEEEECCCHH
Confidence 58888887766 4568888988888888876655543
No 426
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=41.58 E-value=70 Score=24.96 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
++..+.++..|.....-++..|.++|++|.++......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56777788899999999999999999999999765443333
No 427
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=41.54 E-value=3.1e+02 Score=27.37 Aligned_cols=105 Identities=11% Similarity=0.151 Sum_probs=59.3
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcc-hH-HHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHH
Q 012652 6 ILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNSEYN-HK-RVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLI 82 (459)
Q Consensus 6 il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~-~~-~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (459)
|++.... ..|=..-+..|++.|+++|++|..+=+... .+ ..-... .+..... +.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~-------~g~~~~~----ld------------ 58 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQA-------TGRPSRN----LD------------ 58 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHH-------hCCchhh----CC------------
Confidence 4455434 348888999999999999999999854211 00 000000 0100000 00
Q ss_pred HHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCC-------c-----chHHHHHHHcCCceEEEeCcch
Q 012652 83 EKVLQVMPGKLEELIEEINGRDDEKIDCFISDGF-------M-----GWSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~-------~-----~~~~~~A~~~giP~i~~~~~~~ 139 (459)
.+. .....+.+.+..+. .+.|++|.... . .....+|+.++.|++.+.....
T Consensus 59 -~~~-~~~~~i~~~~~~~~----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 59 -SFF-MSEAQIQECFHRHS----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred -ccc-CCHHHHHHHHHHhc----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 000 11333444444443 46899995543 1 1367899999999999887553
No 428
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=41.24 E-value=2.1e+02 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.042 Sum_probs=25.3
Q ss_pred CCccEEEeCCCcc---hHHHHHHHcCCceEEEeC
Q 012652 106 EKIDCFISDGFMG---WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 106 ~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~ 136 (459)
.+||+|+...... .+..+|.++|.|+++-..
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 6899999887655 578899999999997443
No 429
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=40.90 E-value=43 Score=33.07 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
|+.+||.|+..+.-| ..+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 777889888665444 57899999999999988653
No 430
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.71 E-value=47 Score=30.26 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred CCCccceeeccCchhHHHhhh-cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 348 HPSIACFLSHCGWNSTMEGVS-NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~-~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
.+++ +|+=||-||+..|+. .++|++.+ |.-+ +|-. ..++.+++.+++.++++..
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgi--------n~G~------lGfl------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGF--------KAGR------LGFL------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEE--------eCCC------Cccc------cccCHHHHHHHHHHHHcCC
Confidence 3455 999999999998876 47787766 2221 2221 3456788888888887653
No 431
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.37 E-value=43 Score=31.80 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=28.6
Q ss_pred CC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 1 MS-SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 1 m~-~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
|. .|||.|+..+..| ..+|..|.++||+|+++...
T Consensus 1 ~~~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 1 MHHGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 55 6789999877666 46889999999999999874
No 432
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=40.05 E-value=1.7e+02 Score=32.32 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=22.4
Q ss_pred CCccEEEeCCCcchHHHHHHHcCCceEEEe
Q 012652 106 EKIDCFISDGFMGWSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 106 ~~pDlvi~D~~~~~~~~~A~~~giP~i~~~ 135 (459)
.+||++|.... ...+|+++|||++-..
T Consensus 388 ~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 388 KMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred cCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 89999999753 4678999999999654
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.01 E-value=3e+02 Score=25.31 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=33.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
.+++|+...+.|=..-+..|+..|..+|+.|.+++.+.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4788888888888888888999999899999999987653
No 434
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=39.92 E-value=23 Score=30.86 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=27.1
Q ss_pred CCccEEE-eCCCcc-hHHHHHHHcCCceEEEeCcchhH
Q 012652 106 EKIDCFI-SDGFMG-WSMEVAEKMKLRRAVIWTSCAAS 141 (459)
Q Consensus 106 ~~pDlvi-~D~~~~-~~~~~A~~~giP~i~~~~~~~~~ 141 (459)
..||+|| .|+..- -+..=|.++|||+|.+..+..-+
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp 150 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 5799885 565543 56777999999999998776643
No 435
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=39.42 E-value=71 Score=29.06 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=39.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
..+++...|+.|......+++.+.+++|..|.+++.....+.+.+.
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 4577888999999999999999999999999999988776665544
No 436
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=39.36 E-value=3.6e+02 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=25.8
Q ss_pred CCEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 3 SPHILVFS-TPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 3 ~~~il~~~-~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
..+|+++. .|..|. .+|..|+++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 35788886 565564 6899999999999999864
No 437
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.20 E-value=77 Score=29.79 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=55.4
Q ss_pred CEEEEEcCCCc--cCH--HHHHHHHHHHHhCCCEEEEEe-CCcchHHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCCh
Q 012652 4 PHILVFSTPAQ--GHV--IPLLEFSQCLAKHGFRVTFVN-SEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDP 78 (459)
Q Consensus 4 ~~il~~~~~~~--gH~--~p~~~La~~L~~rGh~Vt~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (459)
..|++.+..+. -.+ ....+|++.|.++|.++.++. ++...+..++.. . . .+ . .
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~-~------~-----~~----~----~-- 237 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIA-E------A-----LP----G----A-- 237 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHH-h------h-----CC----C----C--
Confidence 34666665432 112 256789999988899988763 333333332210 0 0 00 0 0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCcchHHHHHHHcCCceEEEeC
Q 012652 79 GKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFMGWSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~~~A~~~giP~i~~~~ 136 (459)
.+. ..-.+.++...+ .+-|++|+.- .....+|..+|+|++.+..
T Consensus 238 -----~l~--g~~sL~el~ali-----~~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 238 -----VVL--PKMSLAEVAALL-----AGADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred -----eec--CCCCHHHHHHHH-----HcCCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 000 112345555555 3478999875 4678999999999998764
No 438
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=39.19 E-value=1.1e+02 Score=25.92 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=59.1
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCcc
Q 012652 273 PKSVIYVAFGSHTVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIA 352 (459)
Q Consensus 273 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~ 352 (459)
++.+-.+.+|..+ +.+++.++..|.+++..-... .... ... -....+.+-.++|+.+|+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~---------~~~~--~~~--~~~~~~~~l~ell~~aDi- 94 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP---------KPEE--GAD--EFGVEYVSLDELLAQADI- 94 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC---------HHHH--HHH--HTTEEESSHHHHHHH-SE-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC---------Chhh--hcc--cccceeeehhhhcchhhh-
Confidence 4568888888765 445555556677776665433 1110 000 012266788899999998
Q ss_pred ceeeccCchhHHHhhhcCCceeccccccccchhhhhhhceeeee-eeeecCCCCcccHHHHHHHHHH
Q 012652 353 CFLSHCGWNSTMEGVSNGIPFLCWPYFVDQFLNESYICDIWKVG-LKLDKDESGIITGEEISNKLVQ 418 (459)
Q Consensus 353 ~~I~HgG~~s~~eal~~gvP~v~~P~~~DQ~~na~rv~~~~G~G-~~~~~~~~~~~~~~~l~~~i~~ 418 (459)
++.|.-.+. ......|+..+.. ++-| +.++.....-++.+.|.+++++
T Consensus 95 -v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 95 -VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred -hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHhh
Confidence 888754321 1345667777776 5544 4444444455667777776653
No 439
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=38.86 E-value=54 Score=29.95 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=31.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|+|.+..=++-|=..-+..||..|+++|++|.++=.+.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 45777766677888999999999999999999986544
No 440
>PRK07308 flavodoxin; Validated
Probab=38.64 E-value=59 Score=26.49 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeCC
Q 012652 1 MSSPHILVFSTPAQGHVIP-LLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p-~~~La~~L~~rGh~Vt~~~~~ 40 (459)
|++.+|++.+ ..||..- .-.|++.|.+.|++|.+....
T Consensus 1 m~~~~IvY~S--~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 1 MALAKIVYAS--MTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CceEEEEEEC--CCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 6655665544 6688776 445788888899999886543
No 441
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=38.57 E-value=67 Score=32.20 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=57.0
Q ss_pred ccCHHHHHHHHHHHHh--------CCCE----EEEEeC--CcchHHHHhhh--hccCCCCCCeEEEecCCCCCCC-----
Q 012652 14 QGHVIPLLEFSQCLAK--------HGFR----VTFVNS--EYNHKRVMKSL--EGKNYLGEQIRLVSIPDGMEPW----- 72 (459)
Q Consensus 14 ~gH~~p~~~La~~L~~--------rGh~----Vt~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~----- 72 (459)
.|.+.=.+.+|++|.+ .|-+ |.++|- +... -.+.. .++.....+..+..+|.+-..+
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~--~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kw 373 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAK--GTTCNQRLEKVSGTENARILRVPFGPEKGILRKW 373 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTT--CGGGTSSEEEETTESSEEEEEE-ESESTEEE-S-
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCc--CCCccccccccCCCCCcEEEEecCCCCcchhhhc
Confidence 3556667777777753 3544 656552 1111 11111 1112223467777777443321
Q ss_pred CCCCChHHHHHHHHHhccHHHHHHHHHHhCCCCCCccEEEeCCCc--chHHHHHHHcCCceEEEeCcch
Q 012652 73 EERTDPGKLIEKVLQVMPGKLEELIEEINGRDDEKIDCFISDGFM--GWSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~--~~~~~~A~~~giP~i~~~~~~~ 139 (459)
-...+.+.+++.|. ....+.+.+++. .+||+|+..-.. ..|..+++++|||...+.++.-
T Consensus 374 isrf~lWPyLe~fa---~d~~~~i~~e~~----~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLe 435 (550)
T PF00862_consen 374 ISRFDLWPYLEEFA---DDAEREILAELQ----GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLE 435 (550)
T ss_dssp --GGG-GGGHHHHH---HHHHHHHHHHHT----S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-H
T ss_pred cchhhchhhHHHHH---HHHHHHHHHHhC----CCCcEEEeccCcchHHHHHHHhhcCCceehhhhccc
Confidence 12233444445443 233444555543 689999966332 2678889999999998877654
No 442
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=38.47 E-value=1.1e+02 Score=28.84 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=28.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 9 FSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 9 ~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
++.++.|=.--...|++.|.++|++|.+++-..-
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3467888888899999999999999999987443
No 443
>PRK13604 luxD acyl transferase; Provisional
Probab=38.45 E-value=65 Score=30.21 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=29.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~ 38 (459)
.+.++++.+..++-..+..+|+.|.++|..|..+=
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 35677777777777779999999999999998764
No 444
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=37.77 E-value=1.5e+02 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecC
Q 012652 17 VIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIP 66 (459)
Q Consensus 17 ~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~ 66 (459)
-.-...+|+.|.+.|.++. ++....+.+++. |+.+..+.
T Consensus 10 K~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~---------GI~v~~Vs 48 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL--STGGTAKLLAEA---------GVPVTEVS 48 (511)
T ss_pred cccHHHHHHHHHHCCCEEE--EechHHHHHHHC---------CCeEEEee
Confidence 3457789999999999984 566888888887 77776664
No 445
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=37.49 E-value=69 Score=27.97 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 2 SSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 2 ~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
+..+|+++..+.-| ...++.|.+.|++|+++++..
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 34678887765444 567889999999999998643
No 446
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=37.48 E-value=54 Score=28.80 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.1
Q ss_pred CEEEEEcCCCc-c-CHHHHHHHHHHHHh
Q 012652 4 PHILVFSTPAQ-G-HVIPLLEFSQCLAK 29 (459)
Q Consensus 4 ~~il~~~~~~~-g-H~~p~~~La~~L~~ 29 (459)
||||+..|.-. | ..||...++++|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 56888876644 3 48999999999965
No 447
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=37.48 E-value=36 Score=34.01 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
+||+|+..+-. .++-|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEeccC
Confidence 46777765543 3778999999999999997543
No 448
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=37.43 E-value=1.3e+02 Score=27.79 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCcchHHH
Q 012652 21 LEFSQCLAKHGFRVTFVNSEYNHKRV 46 (459)
Q Consensus 21 ~~La~~L~~rGh~Vt~~~~~~~~~~v 46 (459)
..+|..|+++|++|.+++.+.....-
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l~ 28 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSLS 28 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 56888999999999999987665443
No 449
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.42 E-value=80 Score=24.27 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=26.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~ 38 (459)
|++.||+++|..+-|--.-.-.+-++..+.|.++.+-.
T Consensus 1 m~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 66678999998777655444456566677888777643
No 450
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=37.28 E-value=39 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012652 22 EFSQCLAKHGFRVTFVNSEYNHKRVMKS 49 (459)
Q Consensus 22 ~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 49 (459)
-+|..|.+.||+|+++......+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4788999999999999986444555554
No 451
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=37.23 E-value=55 Score=23.32 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 012652 19 PLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 19 p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
-.+.+|..|+++|++||++...+
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45889999999999999998654
No 452
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=37.18 E-value=2.7e+02 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.365 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc-chHHHHh
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY-NHKRVMK 48 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~-~~~~v~~ 48 (459)
+.++..++.|=..-++.++..+.+.|..|.|++.+. ..+++.+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 446777788999999999999999999999999975 4444443
No 453
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=37.17 E-value=1.9e+02 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCc
Q 012652 21 LEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 21 ~~La~~L~~rGh~Vt~~~~~~ 41 (459)
..+.+.|+++|+.+.++|+..
T Consensus 98 ~~~L~~L~~~g~~~~i~Sn~~ 118 (198)
T TIGR01428 98 PAGLRALKERGYRLAILSNGS 118 (198)
T ss_pred HHHHHHHHHCCCeEEEEeCCC
Confidence 456778889999999999854
No 454
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=37.16 E-value=36 Score=33.64 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
|++.||+++..+..| +..|+.|.+.+++||++....+
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 346789988865544 3457888767899999987554
No 455
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.14 E-value=2.7e+02 Score=23.85 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=33.1
Q ss_pred CCceeccccc----ccc---chhhhhhhceeeeeeeeecC---------CCCcccHHHHHHHHHHHhC
Q 012652 370 GIPFLCWPYF----VDQ---FLNESYICDIWKVGLKLDKD---------ESGIITGEEISNKLVQVLG 421 (459)
Q Consensus 370 gvP~v~~P~~----~DQ---~~na~rv~~~~G~G~~~~~~---------~~~~~~~~~l~~~i~~ll~ 421 (459)
++|++++|.+ ++. ..|..++++ .|+=+.-... ...-.+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 333 457778887 5766544431 1223456888877777653
No 456
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=37.07 E-value=1.6e+02 Score=30.33 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=22.2
Q ss_pred ccceeeccCc------hhHHHhhhcCCceeccc
Q 012652 351 IACFLSHCGW------NSTMEGVSNGIPFLCWP 377 (459)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~gvP~v~~P 377 (459)
..++++|.|- +.+++|...++|+|++.
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4458898884 47889999999999995
No 457
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=37.02 E-value=57 Score=28.39 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
+.||.+=..++-|-.+.++.=|++|+++|.+|.+..-.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 56888888999999999999999999999999987643
No 458
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=36.93 E-value=56 Score=30.79 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=31.5
Q ss_pred CEEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012652 4 PHILVFSTP---AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNH 43 (459)
Q Consensus 4 ~~il~~~~~---~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 43 (459)
|||+|+.-+ -.-+.+.+..|.++..+|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 477777654 2266678899999999999999999987654
No 459
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.87 E-value=55 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=21.3
Q ss_pred CCccEEEeCCCcch--HHHHHHHcCCceEEEe
Q 012652 106 EKIDCFISDGFMGW--SMEVAEKMKLRRAVIW 135 (459)
Q Consensus 106 ~~pDlvi~D~~~~~--~~~~A~~~giP~i~~~ 135 (459)
.+||+||....... ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 69999998654332 3444578999998864
No 460
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=36.84 E-value=2.2e+02 Score=27.33 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCccEEEeCCCcc---hHHHHHHHcCCceEEEeCcch
Q 012652 92 KLEELIEEINGRDDEKIDCFISDGFMG---WSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 92 ~~~~l~~~l~~~~~~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~~~~ 139 (459)
.+.+..+.+++ .++|+||.=.... .+-.+|...++|++.+-++..
T Consensus 65 ~v~~~~~~~~~---~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTTag 112 (351)
T cd08170 65 EIERLAEIARD---NGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTIAS 112 (351)
T ss_pred HHHHHHHHHhh---cCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCCccc
Confidence 35556666665 8999998765433 455667778999998776643
No 461
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.77 E-value=3.9e+02 Score=27.18 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=36.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
.-+++...++.|-..-+..++.+.+++|..|.+++.....+.+.+
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~ 318 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIR 318 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHH
Confidence 346677778889999999999999999999999998766655543
No 462
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.73 E-value=49 Score=31.09 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
++||.|+..+..| ..+|+.|.++||+|++.....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 6789988776655 578999999999999987643
No 463
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.68 E-value=3.2e+02 Score=24.63 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=20.6
Q ss_pred CCccEEEeCCCcch----HHHHHHHcCCceEEEeC
Q 012652 106 EKIDCFISDGFMGW----SMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 106 ~~pDlvi~D~~~~~----~~~~A~~~giP~i~~~~ 136 (459)
.++|.||....... ....+...|||+|.+..
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence 58998887544322 23445678999998753
No 464
>PRK10490 sensor protein KdpD; Provisional
Probab=36.53 E-value=1.7e+02 Score=32.21 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
+.||.+=..++-|-.+.++.-|++|+++|++|.+---
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~ 60 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVV 60 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5688888899999999999999999999999986543
No 465
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.49 E-value=54 Score=26.00 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=29.8
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012652 6 ILVFSTP-AQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKR 45 (459)
Q Consensus 6 il~~~~~-~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~ 45 (459)
++++..| ..-.+...+=+...|.++|.+||+++++..-..
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kL 46 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKL 46 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhhee
Confidence 3355555 446777788889999999999999998655433
No 466
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=36.42 E-value=3e+02 Score=25.86 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
|||+|+..+. ..+...+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 5788875433 456777888888999886654
No 467
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=36.29 E-value=2.3e+02 Score=23.70 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=58.3
Q ss_pred EcCCCccCHHHHH-HHHHHHHhCCCEEEEEeCCcchHHHHhhhhccCCCCCCeEEEecCCCCCCC--CCCCChHHHHHHH
Q 012652 9 FSTPAQGHVIPLL-EFSQCLAKHGFRVTFVNSEYNHKRVMKSLEGKNYLGEQIRLVSIPDGMEPW--EERTDPGKLIEKV 85 (459)
Q Consensus 9 ~~~~~~gH~~p~~-~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~ 85 (459)
+.+...+.+..++ .+|++|..+|++|.=+........- .....+....++.+-... .....-..-|+.-
T Consensus 4 v~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~--------~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD 75 (159)
T PF10649_consen 4 VVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGD--------GGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLD 75 (159)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCC--------CCccceEEEECCCCCEEEEeeccCCCCcccccC
Confidence 4444556666544 6899999999999877753321111 111255556655432211 0000000001110
Q ss_pred HHhccHHHHHHHHHHhCCCCCCccEEEeCCCcc---------hHHHHHHHcCCceEEEeCc
Q 012652 86 LQVMPGKLEELIEEINGRDDEKIDCFISDGFMG---------WSMEVAEKMKLRRAVIWTS 137 (459)
Q Consensus 86 ~~~~~~~~~~l~~~l~~~~~~~pDlvi~D~~~~---------~~~~~A~~~giP~i~~~~~ 137 (459)
-.........+...+. .++|++|.+-|.- ..+..|-..|||+++..+.
T Consensus 76 ~~~La~A~~~l~~al~----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 76 PGALAEASAALRRALA----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHHHHHHHHHHHh----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 1111111222223332 4799999987643 1234466789999986654
No 468
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.29 E-value=3.3e+02 Score=27.04 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=32.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH--hCCCEEEEEeCCcch
Q 012652 5 HILVFSTPAQGHVIPLLEFSQCLA--KHGFRVTFVNSEYNH 43 (459)
Q Consensus 5 ~il~~~~~~~gH~~p~~~La~~L~--~rGh~Vt~~~~~~~~ 43 (459)
.|+|+...+.|=..-...||..++ +.|++|.+++.+.+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 456776777799999999999997 568999999988764
No 469
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=36.22 E-value=1.2e+02 Score=23.64 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=31.2
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012652 10 STPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHKRVMK 48 (459)
Q Consensus 10 ~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~v~~ 48 (459)
.+...|+....+.+++.++++|..|..+|........+.
T Consensus 59 ~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 59 IISYSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp EEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred eeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 334678889999999999999999999998666555543
No 470
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=36.14 E-value=47 Score=32.54 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=25.9
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEE
Q 012652 5 HILVFS-TPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (459)
Q Consensus 5 ~il~~~-~~~~gH~~p~~~La~~L~~rGh~Vt~~ 37 (459)
+|++-. ..+.|-..-++.|.++|++||++|-=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 344444 445699999999999999999999654
No 471
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.97 E-value=53 Score=30.36 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=35.2
Q ss_pred CCCccceeeccCchhHHHhhh---cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCC
Q 012652 348 HPSIACFLSHCGWNSTMEGVS---NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGD 422 (459)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~---~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 422 (459)
.+++ +|+-||-||+.+++. .++|++.++.. + + |- + ..++++++.+++.+++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G--------~----l--GF-l-----~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMG--------T----L--GF-L-----TEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCC--------C----C--Cc-c-----ccCCHHHHHHHHHHHHcC
Confidence 3455 999999999999874 35677776321 1 1 11 1 334577888888888755
No 472
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=35.86 E-value=68 Score=32.43 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=26.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcc
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKH--GFRVTFVNSEYN 42 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~r--Gh~Vt~~~~~~~ 42 (459)
||||++..+++.| +|+..|++. |++|..+-.+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 5899999888887 477888776 999988855344
No 473
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=35.79 E-value=60 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHhCC-HHHHHHHHH
Q 012652 408 TGEEISNKLVQVLGD-QNFKARALE 431 (459)
Q Consensus 408 ~~~~l~~~i~~ll~~-~~~~~~a~~ 431 (459)
+++.|.+||..+.++ -++++.|+.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 578999999999977 577777665
No 474
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=35.73 E-value=91 Score=30.57 Aligned_cols=108 Identities=15% Similarity=0.257 Sum_probs=54.1
Q ss_pred CCCCchHHHHhccCC--------CCeEEEEEeCCcccCCHHHHHHHHHHHh--hCCCCEEEEEcCCCCCCCCCCCChhHH
Q 012652 258 WPEDSTCLKWLDQQQ--------PKSVIYVAFGSHTVLDHNQFQELALGLE--ICNRPFLWVVRPDITTDANDVYPRGFQ 327 (459)
Q Consensus 258 ~~~~~~~~~~l~~~~--------~~~~v~vs~Gs~~~~~~~~~~~~~~a~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~ 327 (459)
.|.+..+.+|++-.. +.-+.|+.+|.- ...--++-+..+ +++..++ +-.+.-+.+ .-..|..-.
T Consensus 384 ~p~n~~l~~Wid~A~e~i~fqGlpARIcw~g~geR----~r~gLafNemVr~GelkaPvv-igRDHlD~g-svaSP~RET 457 (561)
T COG2987 384 FPDNKHLHRWIDMARERIAFQGLPARICWLGLGER----ARIGLAFNEMVRNGELKAPVV-IGRDHLDSG-SVASPNRET 457 (561)
T ss_pred CCCcHHHHHHHHHHHhcCccccCcceeeecccchH----HHHHHHHHHHHhcCCcCCCeE-ecccccccc-CccCCcchh
Confidence 466778889998542 234677776631 222122222222 2223333 222221111 112233333
Q ss_pred HHhcCCcee-ecccchhhhhcCCCc--cceeeccCchhHHHhhhcCC
Q 012652 328 ERVATRGQM-IGWAPQQRVLSHPSI--ACFLSHCGWNSTMEGVSNGI 371 (459)
Q Consensus 328 ~~~~~nv~i-~~~vpq~~iL~~~~~--~~~I~HgG~~s~~eal~~gv 371 (459)
+.+++.--. .+|.=+..+|..++= =.-+||||--++-.++..|.
T Consensus 458 e~mkDGsdavsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~ 504 (561)
T COG2987 458 EAMKDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGM 504 (561)
T ss_pred hcccCccchhhhhHHHHHHhhhccCCcEEEEecCCcccccccccCce
Confidence 344444444 477778888876552 13689999877766665543
No 475
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=35.70 E-value=49 Score=22.93 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 012652 20 LLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 20 ~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
-+..|..|+++|++|+++-..+
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 3667889999999999997644
No 476
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=35.69 E-value=2.8e+02 Score=27.08 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCC-cchHHHHhh
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHG-FRVTFVNSE-YNHKRVMKS 49 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rG-h~Vt~~~~~-~~~~~v~~~ 49 (459)
++||+++..+.-|+ .+|+.|+++| ++|++++-. ....++...
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 46888887755554 5789999999 999999865 455555443
No 477
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.62 E-value=60 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=20.7
Q ss_pred CEEEEEcCCCcc--CHHHHHHHHHHHHhC
Q 012652 4 PHILVFSTPAQG--HVIPLLEFSQCLAKH 30 (459)
Q Consensus 4 ~~il~~~~~~~g--H~~p~~~La~~L~~r 30 (459)
++||+..|.-.| ..||...++++|...
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 688887766443 589999999999653
No 478
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=35.54 E-value=69 Score=29.67 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=50.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHH
Q 012652 285 TVLDHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTM 364 (459)
Q Consensus 285 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~ 364 (459)
+..+.+..+.+.+|+.+...+.||...+.. + -.++.++++...+-.++.+ ||-+.-..++.
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~----------g-------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGY----------G-------ANRLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcC----------C-------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 334566788899999999999999997761 1 1224555666656566666 77776666666
Q ss_pred Hhhhc--CCceecccc
Q 012652 365 EGVSN--GIPFLCWPY 378 (459)
Q Consensus 365 eal~~--gvP~v~~P~ 378 (459)
-++++ |++.+.-|.
T Consensus 105 ~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 105 LALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHhcCceEEECcc
Confidence 66653 666655554
No 479
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=35.22 E-value=64 Score=30.87 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 1 MSSPHILVFSTPAQG-H---VIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 1 m~~~~il~~~~~~~g-H---~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|+++||+++..+-.+ | +.....+++.|.+.||+|..+....
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECC
Confidence 778899988865433 2 3566788999999999999876543
No 480
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=35.14 E-value=1.9e+02 Score=31.97 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=58.5
Q ss_pred ccchh---hhhcCCCccceeec---cCchh-HHHhhhcCC---ceeccccccccchhhhhhhceee-eeeeeecCCCCcc
Q 012652 339 WAPQQ---RVLSHPSIACFLSH---CGWNS-TMEGVSNGI---PFLCWPYFVDQFLNESYICDIWK-VGLKLDKDESGII 407 (459)
Q Consensus 339 ~vpq~---~iL~~~~~~~~I~H---gG~~s-~~eal~~gv---P~v~~P~~~DQ~~na~rv~~~~G-~G~~~~~~~~~~~ 407 (459)
.+|+. +++..+++ ++.- -|+|. ..|+++++. -+++++ |=-..|. . +| -|+.+ +..
T Consensus 447 ~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~---~-L~~~AllV-----NP~ 512 (934)
T PLN03064 447 SLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQ---S-LGAGAILV-----NPW 512 (934)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHH---H-hCCceEEE-----CCC
Confidence 35654 47788888 5543 47764 459999954 122222 2222222 2 43 35666 456
Q ss_pred cHHHHHHHHHHHhC-CH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012652 408 TGEEISNKLVQVLG-DQ-NFKARALELKEITMSSVREGGSSYKTFQNFLEWVK 458 (459)
Q Consensus 408 ~~~~l~~~i~~ll~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (459)
+.++++++|.++|. ++ +-+++.+++.+.... .+...-.+.|++.+.
T Consensus 513 D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 513 NITEVAASIAQALNMPEEEREKRHRHNFMHVTT-----HTAQEWAETFVSELN 560 (934)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHH
Confidence 89999999999987 44 344444444444432 455666677776654
No 481
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.97 E-value=3.5e+02 Score=25.04 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEeC
Q 012652 90 PGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIWT 136 (459)
Q Consensus 90 ~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~~ 136 (459)
.+.+.++++.+++ .+.++|+++.... .+..+++..|++.+.+.+
T Consensus 214 ~~~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~ 259 (286)
T cd01019 214 AKRLAKIRKEIKE---KGATCVFAEPQFHPKIAETLAEGTGAKVGELDP 259 (286)
T ss_pred HHHHHHHHHHHHH---cCCcEEEecCCCChHHHHHHHHhcCceEEEecc
Confidence 4556677777776 8999999988766 678999999998776544
No 482
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.72 E-value=49 Score=34.19 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=37.9
Q ss_pred cceeeccCchhHHHhhh----cCCceeccccccccchhhhhhhceeeeeeeeecCCCCcccHHHHHHHHHHHhCCH
Q 012652 352 ACFLSHCGWNSTMEGVS----NGIPFLCWPYFVDQFLNESYICDIWKVGLKLDKDESGIITGEEISNKLVQVLGDQ 423 (459)
Q Consensus 352 ~~~I~HgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~rv~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 423 (459)
.++|+-||-||+..+.. .++|++.+ |.-+ +|. + ..++.+++.+++.+++++.
T Consensus 350 dlvi~lGGDGT~L~aa~~~~~~~~PilGi--------n~G~----lGF---L-----~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 350 SHIISIGGDGTVLRASKLVNGEEIPIICI--------NMGT----VGF---L-----TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEE--------cCCC----CCc---C-----cccCHHHHHHHHHHHHcCC
Confidence 44999999999998866 37888887 3322 122 2 3457899999999998653
No 483
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.72 E-value=80 Score=26.60 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~ 38 (459)
..+|++++.++. .=-=.+.+|+.|.++|++|+++.
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 457888886653 22346788999999999999954
No 484
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=34.72 E-value=2.4e+02 Score=25.43 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEeCCcch---HHHHhhhhccCCCCCCeEEEecC-CCCCCCCCCCChHHHHHHHHHhccH
Q 012652 17 VIPLLEFSQCLAKHG-FRVTFVNSEYNH---KRVMKSLEGKNYLGEQIRLVSIP-DGMEPWEERTDPGKLIEKVLQVMPG 91 (459)
Q Consensus 17 ~~p~~~La~~L~~rG-h~Vt~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (459)
+.|..++.++|+..| .+|.++++ +.. +.+.+... ..||++..+. .+..... .+.+.-..
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~-----~~G~eV~~~~~~~~~~~~----------~ia~i~p~ 168 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFA-----VRGFEIVNFTCLGLTDDR----------EMARISPD 168 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHH-----hCCcEEeeeeccCCCCCc----------eeeecCHH
Confidence 457778888888888 67777765 322 11222111 1267666553 2222111 11122344
Q ss_pred HHHHHHHHHhCCCCCCccEEEeCCCcchHH----HHHHHcCCceEEEeCcch
Q 012652 92 KLEELIEEINGRDDEKIDCFISDGFMGWSM----EVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 92 ~~~~l~~~l~~~~~~~pDlvi~D~~~~~~~----~~A~~~giP~i~~~~~~~ 139 (459)
.+.+.+..+.. ..+|.|+..=....+. .+=+.+|+|+++.+....
T Consensus 169 ~i~~~~~~~~~---~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~ 217 (239)
T TIGR02990 169 CIVEAALAAFD---PDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATA 217 (239)
T ss_pred HHHHHHHHhcC---CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHH
Confidence 45555555544 6788886553333332 334668999997554443
No 485
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=34.66 E-value=1.5e+02 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 19 PLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 19 p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
..+...++|.+.||.|+++|.-..
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~ 51 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNM 51 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCc
Confidence 556666777789999999997543
No 486
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=34.58 E-value=3.8e+02 Score=25.60 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcch----HHHHhhhhccCCCCCCeEEEecCCCCCCCCCCCChHHHHHHHHHhccHHHHH
Q 012652 20 LLEFSQCLAKHGFRVTFVNSEYNH----KRVMKSLEGKNYLGEQIRLVSIPDGMEPWEERTDPGKLIEKVLQVMPGKLEE 95 (459)
Q Consensus 20 ~~~La~~L~~rGh~Vt~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (459)
.-.|++++.+.|.+|.+++.+... +.+.+... ..++.+..+.. ..... ....+++
T Consensus 11 ~~~l~~~~~~~~~r~liv~d~~~~~~~~~~v~~~l~-----~~~~~~~~~~~-~~~~p---------------~~~~v~~ 69 (345)
T cd08171 11 YKKIPEVCEKYGKKVVVIGGKTALAAAKDKIKAALE-----QSGIEITDFIW-YGGES---------------TYENVER 69 (345)
T ss_pred HHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHHHH-----HCCCeEEEEEe-cCCCC---------------CHHHHHH
Confidence 456778887778888888875432 22222211 12444432221 11110 1122333
Q ss_pred HHHHHhCCCCCCccEEEeCCCcc---hHHHHHHHcCCceEEEeCcch
Q 012652 96 LIEEINGRDDEKIDCFISDGFMG---WSMEVAEKMKLRRAVIWTSCA 139 (459)
Q Consensus 96 l~~~l~~~~~~~pDlvi~D~~~~---~~~~~A~~~giP~i~~~~~~~ 139 (459)
+.+..++ .++|+||.=..-. .+-.+|..+++|++.+-++..
T Consensus 70 ~~~~~~~---~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~g 113 (345)
T cd08171 70 LKKNPAV---QEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIAS 113 (345)
T ss_pred HHHHHhh---cCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCccc
Confidence 3444444 8999999654433 556677778999998776543
No 487
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.41 E-value=1.8e+02 Score=30.16 Aligned_cols=27 Identities=7% Similarity=0.318 Sum_probs=22.2
Q ss_pred ccceeeccCch------hHHHhhhcCCceeccc
Q 012652 351 IACFLSHCGWN------STMEGVSNGIPFLCWP 377 (459)
Q Consensus 351 ~~~~I~HgG~~------s~~eal~~gvP~v~~P 377 (459)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44489998865 6789999999999985
No 488
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.21 E-value=79 Score=27.71 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCEEEEEeCCcc
Q 012652 21 LEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 21 ~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
..||.+|+..||+|++.+....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCCh
Confidence 5789999999999999976443
No 489
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=34.14 E-value=2.1e+02 Score=29.68 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=21.6
Q ss_pred ccceeeccCc------hhHHHhhhcCCceeccc
Q 012652 351 IACFLSHCGW------NSTMEGVSNGIPFLCWP 377 (459)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~gvP~v~~P 377 (459)
..++++|.|- +.+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3347888884 46789999999999995
No 490
>PRK08181 transposase; Validated
Probab=34.11 E-value=70 Score=29.43 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=30.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012652 4 PHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYNHK 44 (459)
Q Consensus 4 ~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 44 (459)
.+++|+..++.|=.+=..++|.++.++|+.|.|++......
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 46777777777777777788888888899998887644333
No 491
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.10 E-value=1.1e+02 Score=28.62 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHhhCCCCEEEEEcCCCCCCCCCCCChhHHHHhcCCceeecccchhhhhcCCCccceeeccCchhHHHhh
Q 012652 288 DHNQFQELALGLEICNRPFLWVVRPDITTDANDVYPRGFQERVATRGQMIGWAPQQRVLSHPSIACFLSHCGWNSTMEGV 367 (459)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~i~~~vpq~~iL~~~~~~~~I~HgG~~s~~eal 367 (459)
..+.+..+.+.+++.+..+....... +.... ..+ ........++ +|.-||-||+.|++
T Consensus 24 ~~~~~~~~~~~l~~~g~~~~~~~t~~---------~~~~~----------~~a-~~~~~~~~d~--vvv~GGDGTi~evv 81 (306)
T PRK11914 24 APHAAERAIARLHHRGVDVVEIVGTD---------AHDAR----------HLV-AAALAKGTDA--LVVVGGDGVISNAL 81 (306)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEeCC---------HHHHH----------HHH-HHHHhcCCCE--EEEECCchHHHHHh
Confidence 34567777888887777765444322 11111 000 1112233455 99999999999886
Q ss_pred ----hcCCceecccc
Q 012652 368 ----SNGIPFLCWPY 378 (459)
Q Consensus 368 ----~~gvP~v~~P~ 378 (459)
..++|+-++|.
T Consensus 82 ~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 82 QVLAGTDIPLGIIPA 96 (306)
T ss_pred HHhccCCCcEEEEeC
Confidence 34789999995
No 492
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=34.09 E-value=3.3e+02 Score=25.62 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHhCCCCCCccEEEeCCCcc--hHHHHHHHcCCceEEEe
Q 012652 90 PGKLEELIEEINGRDDEKIDCFISDGFMG--WSMEVAEKMKLRRAVIW 135 (459)
Q Consensus 90 ~~~~~~l~~~l~~~~~~~pDlvi~D~~~~--~~~~~A~~~giP~i~~~ 135 (459)
.+.+.++++.+++ .+..+|+++.... .+..+++..|++.+.+.
T Consensus 238 ~~~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~la~e~g~~v~~ld 282 (311)
T PRK09545 238 AQRLHEIRTQLVE---QKATCVFAEPQFRPAVIESVAKGTSVRMGTLD 282 (311)
T ss_pred HHHHHHHHHHHHH---cCCCEEEecCCCChHHHHHHHHhcCCeEEEec
Confidence 4566777777777 8999999998876 56789999999987654
No 493
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=34.02 E-value=65 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012652 11 TPAQGHVIPLLEFSQCLAKHGFRVTFVNSEYN 42 (459)
Q Consensus 11 ~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~~~ 42 (459)
.++.|++- ..++++|.++||+|+.++....
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGG
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCch
Confidence 34555554 4589999999999999997644
No 494
>PRK06179 short chain dehydrogenase; Provisional
Probab=33.94 E-value=75 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
|...+.++++. +.|.+ -..++++|.++|++|+.++..
T Consensus 1 m~~~~~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 54344455553 33444 468899999999999988754
No 495
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.92 E-value=97 Score=22.33 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=27.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 012652 6 ILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (459)
Q Consensus 6 il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~ 38 (459)
+++...++.|=..-...+|..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666677888899999999999999998876
No 496
>PRK07236 hypothetical protein; Provisional
Probab=33.91 E-value=68 Score=31.15 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
|++.+|+|+..+- --+.+|..|+++|++|+++--.
T Consensus 4 ~~~~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGSL-----GGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCeEEEECCCH-----HHHHHHHHHHhCCCCEEEEecC
Confidence 5577899988763 3478899999999999999743
No 497
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=33.78 E-value=71 Score=30.39 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCEEEEEeCCc
Q 012652 1 MSSPHILVFSTPAQG-H---VIPLLEFSQCLAKHGFRVTFVNSEY 41 (459)
Q Consensus 1 m~~~~il~~~~~~~g-H---~~p~~~La~~L~~rGh~Vt~~~~~~ 41 (459)
|++.||+++..+... | +.....+++.|.+.||+|..+-...
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 778899988755432 2 3467789999999999999886543
No 498
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.52 E-value=1.2e+02 Score=28.00 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=32.0
Q ss_pred ceeecccchhh---hhcCCCccceeeccCchhHHHhhhcCCcee--ccccc
Q 012652 334 GQMIGWAPQQR---VLSHPSIACFLSHCGWNSTMEGVSNGIPFL--CWPYF 379 (459)
Q Consensus 334 v~i~~~vpq~~---iL~~~~~~~~I~HgG~~s~~eal~~gvP~v--~~P~~ 379 (459)
+...+|+||++ +|--||+ -+-. |--|..-|..+|+|.+ +.|+.
T Consensus 240 vvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHIYpQd 287 (370)
T COG4394 240 VVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHIYPQD 287 (370)
T ss_pred EEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEecCCc
Confidence 33459999974 8999987 3333 6679999999999985 44443
No 499
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=33.45 E-value=70 Score=28.77 Aligned_cols=37 Identities=24% Similarity=0.123 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 012652 3 SPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNS 39 (459)
Q Consensus 3 ~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~ 39 (459)
.++||++...-.==..-+-.....|+++||+|++++-
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 5677766544443445566677778899999999974
No 500
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.37 E-value=60 Score=30.11 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 012652 1 MSSPHILVFSTPAQGHVIPLLEFSQCLAKHGFRVTFVNSE 40 (459)
Q Consensus 1 m~~~~il~~~~~~~gH~~p~~~La~~L~~rGh~Vt~~~~~ 40 (459)
|+-.||.++..+..| ..+|..|+++||+|+++...
T Consensus 1 ~~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 1 MDIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 554678888777666 56888999999999999764
Done!