Query 012653
Match_columns 459
No_of_seqs 373 out of 2270
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 6.1E-47 1.3E-51 373.4 6.5 185 260-458 2-190 (286)
2 TIGR03843 conserved hypothetic 100.0 3.2E-39 6.9E-44 308.8 9.1 144 267-458 2-174 (253)
3 cd01802 AN1_N ubiquitin-like d 99.7 4.2E-17 9E-22 139.8 9.4 92 91-184 9-100 (103)
4 cd01807 GDX_N ubiquitin-like d 99.6 4.4E-16 9.6E-21 125.2 7.9 73 110-184 1-73 (74)
5 cd01802 AN1_N ubiquitin-like d 99.6 1.6E-15 3.4E-20 130.1 9.3 79 30-109 24-103 (103)
6 cd01793 Fubi Fubi ubiquitin-li 99.6 1.4E-15 3E-20 122.4 7.8 74 34-109 1-74 (74)
7 cd01807 GDX_N ubiquitin-like d 99.6 2.1E-15 4.5E-20 121.3 7.7 72 34-106 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.6 2.6E-15 5.6E-20 120.9 7.9 75 34-109 1-76 (76)
9 cd01793 Fubi Fubi ubiquitin-li 99.6 5.6E-15 1.2E-19 118.8 7.9 71 110-184 1-71 (74)
10 cd01797 NIRF_N amino-terminal 99.6 6E-15 1.3E-19 120.2 7.8 74 110-185 1-76 (78)
11 PTZ00044 ubiquitin; Provisiona 99.6 1.1E-14 2.5E-19 117.1 8.2 73 110-184 1-73 (76)
12 cd01798 parkin_N amino-termina 99.5 1.1E-14 2.5E-19 115.7 7.5 70 112-183 1-70 (70)
13 cd01797 NIRF_N amino-terminal 99.5 1E-14 2.2E-19 118.9 7.2 73 34-107 1-76 (78)
14 cd01805 RAD23_N Ubiquitin-like 99.5 2.4E-14 5.1E-19 115.5 8.6 74 110-185 1-76 (77)
15 cd01810 ISG15_repeat2 ISG15 ub 99.5 2E-14 4.2E-19 115.7 8.1 71 112-184 1-71 (74)
16 cd01803 Ubiquitin Ubiquitin. U 99.5 2.1E-14 4.6E-19 115.0 7.8 75 34-109 1-76 (76)
17 cd01810 ISG15_repeat2 ISG15 ub 99.5 1.7E-14 3.6E-19 116.1 7.1 73 36-109 1-74 (74)
18 cd01806 Nedd8 Nebb8-like ubiq 99.5 2.6E-14 5.6E-19 114.5 8.1 75 34-109 1-76 (76)
19 KOG0003 Ubiquitin/60s ribosoma 99.5 1.6E-15 3.5E-20 127.7 0.7 75 34-109 1-76 (128)
20 cd01806 Nedd8 Nebb8-like ubiq 99.5 5.3E-14 1.1E-18 112.7 8.4 73 110-184 1-73 (76)
21 cd01794 DC_UbP_C dendritic cel 99.5 3.6E-14 7.7E-19 113.3 7.3 68 113-182 2-69 (70)
22 cd01803 Ubiquitin Ubiquitin. U 99.5 6.3E-14 1.4E-18 112.3 8.2 73 110-184 1-73 (76)
23 cd01804 midnolin_N Ubiquitin-l 99.5 7.4E-14 1.6E-18 113.7 8.1 75 33-109 1-76 (78)
24 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 6.3E-14 1.4E-18 112.9 7.4 70 34-104 2-72 (73)
25 cd01809 Scythe_N Ubiquitin-lik 99.5 8E-14 1.7E-18 110.5 7.9 72 110-183 1-72 (72)
26 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 5.6E-14 1.2E-18 113.2 6.9 70 110-181 2-71 (73)
27 cd01798 parkin_N amino-termina 99.5 6.6E-14 1.4E-18 111.3 6.8 69 36-105 1-70 (70)
28 cd01792 ISG15_repeat1 ISG15 ub 99.5 1.3E-13 2.9E-18 112.6 7.1 74 110-185 3-78 (80)
29 cd01805 RAD23_N Ubiquitin-like 99.5 2E-13 4.3E-18 110.1 7.9 71 34-105 1-74 (77)
30 cd01809 Scythe_N Ubiquitin-lik 99.5 1.9E-13 4.2E-18 108.3 7.6 71 34-105 1-72 (72)
31 cd01794 DC_UbP_C dendritic cel 99.5 1.3E-13 2.8E-18 110.1 6.6 67 37-104 2-69 (70)
32 KOG0004 Ubiquitin/40S ribosoma 99.4 3.3E-14 7.2E-19 127.8 3.2 75 34-109 1-76 (156)
33 cd01808 hPLIC_N Ubiquitin-like 99.4 2.4E-13 5.2E-18 108.4 7.6 71 110-183 1-71 (71)
34 cd01804 midnolin_N Ubiquitin-l 99.4 2.6E-13 5.7E-18 110.5 7.8 73 109-184 1-73 (78)
35 PF00240 ubiquitin: Ubiquitin 99.4 4.6E-13 1E-17 105.6 8.1 68 115-184 1-68 (69)
36 KOG0005 Ubiquitin-like protein 99.4 9.8E-14 2.1E-18 105.2 3.9 70 110-181 1-70 (70)
37 KOG0005 Ubiquitin-like protein 99.4 9.6E-14 2.1E-18 105.3 3.8 69 34-103 1-70 (70)
38 KOG0003 Ubiquitin/60s ribosoma 99.4 2.4E-14 5.2E-19 120.7 -0.6 72 110-183 1-72 (128)
39 cd01792 ISG15_repeat1 ISG15 ub 99.4 5.8E-13 1.3E-17 108.8 7.2 71 34-105 3-76 (80)
40 cd01796 DDI1_N DNA damage indu 99.4 6.1E-13 1.3E-17 106.3 7.2 68 112-181 1-70 (71)
41 cd01800 SF3a120_C Ubiquitin-li 99.4 5.7E-13 1.2E-17 107.8 7.1 70 39-109 4-73 (76)
42 cd01808 hPLIC_N Ubiquitin-like 99.4 6.4E-13 1.4E-17 105.9 7.0 70 34-105 1-71 (71)
43 cd01796 DDI1_N DNA damage indu 99.4 8.8E-13 1.9E-17 105.4 6.9 67 36-103 1-70 (71)
44 KOG0004 Ubiquitin/40S ribosoma 99.4 2.3E-13 5E-18 122.4 3.9 72 110-183 1-72 (156)
45 PF00240 ubiquitin: Ubiquitin 99.4 1.6E-12 3.5E-17 102.4 8.0 67 39-106 2-68 (69)
46 cd01812 BAG1_N Ubiquitin-like 99.3 4.6E-12 1E-16 100.3 7.4 70 34-104 1-70 (71)
47 cd01763 Sumo Small ubiquitin-r 99.3 8.6E-12 1.9E-16 103.6 9.2 81 28-109 6-87 (87)
48 cd01800 SF3a120_C Ubiquitin-li 99.3 6.9E-12 1.5E-16 101.5 7.6 67 117-185 5-71 (76)
49 cd01812 BAG1_N Ubiquitin-like 99.3 6.4E-12 1.4E-16 99.5 7.1 69 110-181 1-69 (71)
50 cd01790 Herp_N Homocysteine-re 99.3 6.1E-12 1.3E-16 102.6 6.7 72 110-182 2-78 (79)
51 cd01813 UBP_N UBP ubiquitin pr 99.3 1E-11 2.2E-16 100.3 7.6 69 34-103 1-72 (74)
52 cd01790 Herp_N Homocysteine-re 99.2 1.3E-11 2.9E-16 100.7 6.5 71 33-104 1-78 (79)
53 cd01799 Hoil1_N Ubiquitin-like 99.2 2.1E-11 4.6E-16 98.7 7.1 69 35-104 2-74 (75)
54 cd01763 Sumo Small ubiquitin-r 99.2 4.2E-11 9.2E-16 99.5 8.8 76 107-184 9-84 (87)
55 TIGR00601 rad23 UV excision re 99.2 3.7E-11 8E-16 124.6 8.9 76 110-187 1-79 (378)
56 cd01813 UBP_N UBP ubiquitin pr 99.2 8.5E-11 1.8E-15 94.9 7.2 69 110-181 1-72 (74)
57 smart00213 UBQ Ubiquitin homol 99.1 1.1E-10 2.3E-15 89.8 6.5 64 110-176 1-64 (64)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 6.1E-11 1.3E-15 95.7 4.6 53 51-104 19-74 (75)
59 smart00213 UBQ Ubiquitin homol 99.1 1.5E-10 3.3E-15 88.9 6.7 64 34-98 1-64 (64)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 1.3E-10 2.8E-15 93.8 5.4 56 126-182 16-74 (75)
61 TIGR00601 rad23 UV excision re 99.1 2.4E-10 5.3E-15 118.5 7.4 71 34-105 1-75 (378)
62 cd01814 NTGP5 Ubiquitin-like N 99.0 3.4E-10 7.3E-15 97.5 5.9 77 110-186 5-93 (113)
63 cd01799 Hoil1_N Ubiquitin-like 99.0 5.3E-10 1.1E-14 90.5 6.3 64 116-182 9-74 (75)
64 cd01795 USP48_C USP ubiquitin- 99.0 1E-09 2.2E-14 92.2 6.0 63 44-106 16-78 (107)
65 cd01769 UBL Ubiquitin-like dom 98.9 4.1E-09 8.9E-14 82.0 7.0 67 114-182 2-68 (69)
66 PF00454 PI3_PI4_kinase: Phosp 98.8 6.9E-12 1.5E-16 121.5 -13.0 129 326-457 28-165 (235)
67 KOG0010 Ubiquitin-like protein 98.8 4.1E-09 8.8E-14 110.4 6.3 75 32-107 14-88 (493)
68 PF11976 Rad60-SLD: Ubiquitin- 98.8 1E-08 2.2E-13 81.5 7.2 71 110-182 1-72 (72)
69 KOG0010 Ubiquitin-like protein 98.8 5.4E-09 1.2E-13 109.5 6.7 74 109-185 15-88 (493)
70 cd01795 USP48_C USP ubiquitin- 98.8 8.3E-09 1.8E-13 86.8 6.4 61 121-183 16-77 (107)
71 KOG0011 Nucleotide excision re 98.8 8.7E-09 1.9E-13 103.1 7.6 77 110-186 1-77 (340)
72 cd01814 NTGP5 Ubiquitin-like N 98.8 5.3E-09 1.2E-13 90.2 4.9 75 32-107 3-92 (113)
73 cd01789 Alp11_N Ubiquitin-like 98.8 2.7E-08 5.8E-13 82.2 8.8 70 34-103 2-79 (84)
74 cd01769 UBL Ubiquitin-like dom 98.8 1.5E-08 3.3E-13 78.7 6.6 64 40-104 5-68 (69)
75 PF11976 Rad60-SLD: Ubiquitin- 98.8 2.2E-08 4.8E-13 79.6 7.4 70 34-104 1-72 (72)
76 KOG0011 Nucleotide excision re 98.7 1.2E-08 2.7E-13 102.0 6.0 73 34-107 1-76 (340)
77 KOG0001 Ubiquitin and ubiquiti 98.7 9.5E-08 2.1E-12 73.9 8.9 72 112-185 2-73 (75)
78 KOG0001 Ubiquitin and ubiquiti 98.7 6.6E-08 1.4E-12 74.8 7.8 71 36-107 2-73 (75)
79 PF14560 Ubiquitin_2: Ubiquiti 98.4 9.2E-07 2E-11 73.3 8.4 70 34-103 2-81 (87)
80 cd01788 ElonginB Ubiquitin-lik 98.4 6.5E-07 1.4E-11 77.2 6.8 75 34-109 3-84 (119)
81 cd01789 Alp11_N Ubiquitin-like 98.4 1.4E-06 3.1E-11 72.0 8.3 63 119-183 12-81 (84)
82 KOG3829 Uncharacterized conser 98.3 1E-06 2.2E-11 90.5 7.3 166 257-456 151-387 (486)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.3 5.5E-06 1.2E-10 72.1 9.9 79 111-189 4-94 (111)
84 cd01788 ElonginB Ubiquitin-lik 98.2 3.2E-06 7E-11 72.9 7.3 73 111-185 2-82 (119)
85 PLN02560 enoyl-CoA reductase 98.2 3E-06 6.4E-11 86.1 7.1 70 110-181 1-81 (308)
86 KOG4248 Ubiquitin-like protein 98.2 2.5E-06 5.4E-11 95.9 6.1 72 111-185 4-75 (1143)
87 PLN02560 enoyl-CoA reductase 98.1 3.9E-06 8.4E-11 85.3 6.9 68 34-102 1-80 (308)
88 KOG4248 Ubiquitin-like protein 98.1 3E-06 6.5E-11 95.3 5.6 70 35-106 4-74 (1143)
89 PF14560 Ubiquitin_2: Ubiquiti 98.0 1.2E-05 2.5E-10 66.6 6.6 70 112-183 4-83 (87)
90 PF13881 Rad60-SLD_2: Ubiquiti 97.9 6.4E-05 1.4E-09 65.5 8.9 74 33-107 2-90 (111)
91 cd00196 UBQ Ubiquitin-like pro 97.9 6.8E-05 1.5E-09 54.6 7.4 64 117-182 5-68 (69)
92 PF11543 UN_NPL4: Nuclear pore 97.8 4E-05 8.7E-10 62.9 5.7 73 31-103 2-78 (80)
93 cd01811 OASL_repeat1 2'-5' oli 97.7 0.00011 2.4E-09 58.8 6.7 70 34-104 1-75 (80)
94 cd00196 UBQ Ubiquitin-like pro 97.7 0.00013 2.8E-09 53.1 6.6 63 41-104 6-68 (69)
95 cd01801 Tsc13_N Ubiquitin-like 97.7 0.0001 2.3E-09 59.6 6.5 53 127-180 20-74 (77)
96 cd01801 Tsc13_N Ubiquitin-like 97.6 0.0001 2.2E-09 59.6 5.7 52 50-102 20-74 (77)
97 PF11543 UN_NPL4: Nuclear pore 97.6 6.7E-05 1.5E-09 61.6 3.8 71 108-181 3-78 (80)
98 cd01811 OASL_repeat1 2'-5' oli 97.3 0.00077 1.7E-08 54.1 6.6 70 110-182 1-75 (80)
99 KOG0006 E3 ubiquitin-protein l 97.2 0.00038 8.1E-09 69.8 5.1 65 120-186 14-78 (446)
100 KOG0006 E3 ubiquitin-protein l 97.2 0.00058 1.3E-08 68.5 6.0 69 34-103 1-73 (446)
101 KOG4495 RNA polymerase II tran 96.8 0.0024 5.2E-08 53.7 5.5 62 34-95 3-65 (110)
102 KOG3493 Ubiquitin-like protein 96.7 0.00068 1.5E-08 52.9 1.3 68 35-103 3-71 (73)
103 KOG3493 Ubiquitin-like protein 96.4 0.001 2.2E-08 51.9 0.6 68 111-180 3-70 (73)
104 PF07804 HipA_C: HipA-like C-t 96.3 0.00098 2.1E-08 54.1 -0.1 38 412-450 40-77 (79)
105 KOG4495 RNA polymerase II tran 96.0 0.011 2.4E-07 49.8 4.7 51 120-172 12-64 (110)
106 PF06702 DUF1193: Protein of u 96.0 0.0043 9.3E-08 60.0 2.4 41 414-456 91-131 (221)
107 KOG1872 Ubiquitin-specific pro 95.9 0.014 3.1E-07 61.7 6.1 69 36-105 6-75 (473)
108 KOG1872 Ubiquitin-specific pro 95.3 0.035 7.6E-07 58.8 6.3 71 112-185 6-77 (473)
109 PF11470 TUG-UBL1: GLUT4 regul 95.2 0.062 1.3E-06 42.5 6.0 63 39-102 3-65 (65)
110 KOG1769 Ubiquitin-like protein 94.9 0.16 3.5E-06 43.2 8.2 78 31-109 18-96 (99)
111 PF13019 Telomere_Sde2: Telome 94.8 0.098 2.1E-06 48.5 7.1 76 34-109 1-88 (162)
112 KOG1769 Ubiquitin-like protein 94.7 0.22 4.9E-06 42.4 8.4 74 110-185 21-94 (99)
113 PF11470 TUG-UBL1: GLUT4 regul 94.6 0.12 2.6E-06 40.8 6.2 62 117-180 4-65 (65)
114 PF10302 DUF2407: DUF2407 ubiq 94.5 0.08 1.7E-06 45.1 5.3 49 121-169 13-63 (97)
115 PF08817 YukD: WXG100 protein 94.4 0.078 1.7E-06 43.0 4.9 71 110-180 3-78 (79)
116 KOG0013 Uncharacterized conser 94.1 0.062 1.3E-06 51.5 4.4 65 36-101 150-214 (231)
117 PF08817 YukD: WXG100 protein 93.9 0.14 3.1E-06 41.5 5.6 68 34-102 3-78 (79)
118 KOG3206 Alpha-tubulin folding 93.7 0.13 2.9E-06 49.2 5.7 71 34-104 2-80 (234)
119 cd00893 PI4Kc_III Phosphoinosi 93.6 0.036 7.7E-07 56.2 1.8 39 414-456 130-168 (289)
120 PF10302 DUF2407: DUF2407 ubiq 93.5 0.16 3.5E-06 43.2 5.4 48 44-92 13-64 (97)
121 PF00789 UBX: UBX domain; Int 93.3 0.45 9.9E-06 38.4 7.6 72 31-102 4-80 (82)
122 KOG0013 Uncharacterized conser 93.2 0.2 4.2E-06 48.2 5.9 62 118-181 155-216 (231)
123 cd05177 PI3Kc_C2_gamma Phospho 92.7 0.059 1.3E-06 56.0 1.9 39 414-456 194-232 (354)
124 cd05168 PI4Kc_III_beta Phospho 92.5 0.064 1.4E-06 54.4 1.9 39 414-456 132-170 (293)
125 cd05165 PI3Kc_I Phosphoinositi 92.5 0.061 1.3E-06 56.2 1.7 39 414-456 203-241 (366)
126 cd05174 PI3Kc_IA_delta Phospho 92.5 0.064 1.4E-06 55.9 1.8 39 414-456 199-237 (361)
127 PF00789 UBX: UBX domain; Int 92.5 0.54 1.2E-05 38.0 6.9 70 109-180 6-80 (82)
128 cd05175 PI3Kc_IA_alpha Phospho 92.3 0.066 1.4E-06 55.8 1.7 39 414-456 202-240 (366)
129 cd05167 PI4Kc_III_alpha Phosph 92.2 0.074 1.6E-06 54.4 1.8 39 414-456 151-189 (311)
130 cd05173 PI3Kc_IA_beta Phosphoi 92.0 0.077 1.7E-06 55.3 1.7 39 414-456 199-237 (362)
131 cd05166 PI3Kc_II Phosphoinosit 92.0 0.085 1.8E-06 54.9 2.0 39 414-456 193-231 (353)
132 cd00896 PI3Kc_III Phosphoinosi 91.6 0.09 2E-06 54.7 1.7 39 414-456 193-231 (350)
133 cd00891 PI3Kc Phosphoinositide 91.6 0.086 1.9E-06 54.9 1.5 39 414-456 194-232 (352)
134 cd00895 PI3Kc_C2_beta Phosphoi 91.4 0.1 2.2E-06 54.2 1.9 39 414-456 194-232 (354)
135 PF13019 Telomere_Sde2: Telome 91.1 0.85 1.8E-05 42.4 7.4 72 110-183 1-84 (162)
136 PF14533 USP7_C2: Ubiquitin-sp 90.6 2.1 4.5E-05 41.4 10.0 113 31-146 18-159 (213)
137 smart00166 UBX Domain present 90.3 1.1 2.5E-05 36.2 6.7 69 110-180 5-78 (80)
138 cd01770 p47_UBX p47-like ubiqu 89.8 1.3 2.8E-05 36.1 6.7 69 110-179 5-76 (79)
139 PF09379 FERM_N: FERM N-termin 89.5 1.9 4.1E-05 34.4 7.4 59 114-173 1-65 (80)
140 KOG1639 Steroid reductase requ 89.4 0.5 1.1E-05 46.6 4.6 67 34-101 1-75 (297)
141 COG5417 Uncharacterized small 89.3 2 4.4E-05 34.8 7.1 69 33-102 4-80 (81)
142 cd00894 PI3Kc_IB_gamma Phospho 88.7 0.2 4.4E-06 52.3 1.4 39 414-456 203-241 (365)
143 KOG1639 Steroid reductase requ 88.6 0.8 1.7E-05 45.2 5.3 69 110-180 1-76 (297)
144 cd05176 PI3Kc_C2_alpha Phospho 88.4 0.21 4.6E-06 51.9 1.3 39 414-456 193-231 (353)
145 smart00166 UBX Domain present 88.1 2.5 5.5E-05 34.1 7.3 71 32-102 3-78 (80)
146 COG5227 SMT3 Ubiquitin-like pr 88.0 1.4 3E-05 37.0 5.6 73 31-104 22-95 (103)
147 cd01770 p47_UBX p47-like ubiqu 87.8 2.3 5E-05 34.7 6.8 67 33-99 4-74 (79)
148 cd01772 SAKS1_UBX SAKS1-like U 86.7 3.3 7.2E-05 33.6 7.2 68 110-180 5-77 (79)
149 PF14836 Ubiquitin_3: Ubiquiti 86.2 3.4 7.3E-05 34.7 7.0 66 43-109 14-84 (88)
150 PF15044 CLU_N: Mitochondrial 85.8 1.6 3.5E-05 35.4 4.9 57 126-183 1-58 (76)
151 cd00892 PIKKc_ATR ATR (Ataxia 85.1 0.59 1.3E-05 45.9 2.4 40 414-456 130-169 (237)
152 cd06407 PB1_NLP A PB1 domain i 84.9 3.5 7.6E-05 34.0 6.5 46 34-79 1-47 (82)
153 KOG0903 Phosphatidylinositol 4 84.1 0.6 1.3E-05 52.4 2.1 36 417-456 689-724 (847)
154 PF12436 USP7_ICP0_bdg: ICP0-b 84.1 7.8 0.00017 38.3 9.8 123 30-155 65-223 (249)
155 cd00142 PI3Kc_like Phosphoinos 83.8 0.73 1.6E-05 44.6 2.4 40 414-456 119-158 (219)
156 cd05124 AFK Actin-Fragmin Kina 83.8 1.4 3.1E-05 43.3 4.3 50 391-440 94-159 (238)
157 PTZ00303 phosphatidylinositol 83.7 0.43 9.4E-06 53.5 0.8 40 414-457 1136-1175(1374)
158 cd01767 UBX UBX (ubiquitin reg 83.5 5.6 0.00012 31.8 7.1 65 111-178 4-73 (77)
159 cd01774 Faf1_like2_UBX Faf1 ik 83.2 6.2 0.00014 32.6 7.3 70 108-180 3-82 (85)
160 PF11620 GABP-alpha: GA-bindin 82.9 3.7 7.9E-05 34.2 5.7 61 121-183 4-64 (88)
161 KOG4583 Membrane-associated ER 82.9 0.49 1.1E-05 48.4 0.8 71 111-181 11-85 (391)
162 COG5417 Uncharacterized small 82.8 6.2 0.00013 32.1 6.8 66 115-180 12-80 (81)
163 PF15044 CLU_N: Mitochondrial 81.5 2.3 4.9E-05 34.5 4.0 58 49-107 1-60 (76)
164 cd01767 UBX UBX (ubiquitin reg 81.4 7.6 0.00016 31.0 7.1 64 34-98 3-71 (77)
165 cd05169 PIKKc_TOR TOR (Target 80.6 0.96 2.1E-05 45.4 1.9 41 413-456 171-211 (280)
166 PRK09775 putative DNA-binding 80.5 0.71 1.5E-05 49.5 1.0 39 412-450 327-365 (442)
167 KOG0906 Phosphatidylinositol 3 80.5 1.5 3.2E-05 48.7 3.3 39 414-456 685-723 (843)
168 smart00146 PI3Kc Phosphoinosit 80.1 0.72 1.6E-05 44.0 0.8 39 414-456 92-130 (202)
169 cd05164 PIKKc Phosphoinositide 79.8 1.2 2.5E-05 43.4 2.2 40 414-456 122-161 (222)
170 KOG0012 DNA damage inducible p 79.7 2.4 5.2E-05 44.0 4.4 76 34-109 1-80 (380)
171 cd05170 PIKKc_SMG1 Suppressor 79.4 1.3 2.7E-05 45.3 2.4 41 413-456 199-239 (307)
172 PF11620 GABP-alpha: GA-bindin 79.4 4.3 9.4E-05 33.8 5.0 60 44-104 4-63 (88)
173 cd01772 SAKS1_UBX SAKS1-like U 79.1 9.5 0.00021 30.9 7.0 69 33-102 4-77 (79)
174 cd01774 Faf1_like2_UBX Faf1 ik 79.1 10 0.00022 31.3 7.3 71 31-102 2-82 (85)
175 COG5227 SMT3 Ubiquitin-like pr 79.1 6.2 0.00014 33.2 5.8 67 112-180 27-93 (103)
176 cd05172 PIKKc_DNA-PK DNA-depen 79.1 1.6 3.4E-05 42.9 2.8 40 414-456 127-166 (235)
177 cd06406 PB1_P67 A PB1 domain i 78.2 8.4 0.00018 31.8 6.3 45 35-80 4-48 (80)
178 KOG1235 Predicted unusual prot 75.7 1.8 3.9E-05 47.6 2.4 36 420-455 317-352 (538)
179 cd05171 PIKKc_ATM Ataxia telan 75.3 1.7 3.8E-05 43.7 2.0 41 413-456 171-211 (279)
180 smart00666 PB1 PB1 domain. Pho 75.2 15 0.00032 29.3 7.1 46 34-79 2-47 (81)
181 KOG0904 Phosphatidylinositol 3 74.3 2.7 5.9E-05 48.1 3.3 36 30-65 34-70 (1076)
182 cd01773 Faf1_like1_UBX Faf1 ik 72.7 19 0.00042 29.7 7.2 70 33-103 5-79 (82)
183 cd01773 Faf1_like1_UBX Faf1 ik 72.2 20 0.00042 29.7 7.1 69 110-181 6-79 (82)
184 cd01771 Faf1_UBX Faf1 UBX doma 71.8 22 0.00048 29.0 7.4 71 32-103 3-78 (80)
185 KOG0902 Phosphatidylinositol 4 71.7 1.4 3.1E-05 52.6 0.4 38 415-456 1644-1681(1803)
186 PRK08364 sulfur carrier protei 69.2 27 0.00059 27.5 7.2 63 36-108 5-69 (70)
187 KOG3206 Alpha-tubulin folding 67.9 15 0.00033 35.5 6.3 65 122-188 15-86 (234)
188 PF09379 FERM_N: FERM N-termin 67.3 36 0.00078 26.8 7.7 56 39-95 3-65 (80)
189 KOG0905 Phosphoinositide 3-kin 66.5 5.2 0.00011 47.4 3.4 34 417-454 1190-1223(1639)
190 PF15051 FAM198: FAM198 protei 65.2 2.9 6.2E-05 42.5 1.0 119 320-455 67-241 (326)
191 KOG0012 DNA damage inducible p 65.1 9.6 0.00021 39.7 4.7 72 118-191 11-84 (380)
192 cd06406 PB1_P67 A PB1 domain i 65.0 19 0.00041 29.7 5.6 38 121-160 12-49 (80)
193 PF00564 PB1: PB1 domain; Int 64.0 35 0.00076 27.1 7.1 47 33-79 1-48 (84)
194 cd06407 PB1_NLP A PB1 domain i 63.9 28 0.0006 28.6 6.4 43 117-160 7-49 (82)
195 PF14453 ThiS-like: ThiS-like 63.8 26 0.00057 27.0 5.8 54 110-181 1-54 (57)
196 PRK06488 sulfur carrier protei 63.6 31 0.00067 26.6 6.4 63 37-108 2-64 (65)
197 smart00295 B41 Band 4.1 homolo 63.4 40 0.00088 31.1 8.4 61 110-171 4-70 (207)
198 cd05163 TRRAP TRansformation/t 63.1 5.5 0.00012 39.6 2.6 40 414-456 145-184 (253)
199 cd06409 PB1_MUG70 The MUG70 pr 62.6 16 0.00036 30.4 4.9 45 112-156 3-48 (86)
200 PRK06437 hypothetical protein; 62.3 39 0.00085 26.5 6.8 61 38-108 5-66 (67)
201 PF08337 Plexin_cytopl: Plexin 62.3 11 0.00025 41.4 5.0 80 30-109 186-293 (539)
202 cd00754 MoaD Ubiquitin domain 62.2 27 0.00059 27.5 6.0 61 43-109 16-80 (80)
203 smart00455 RBD Raf-like Ras-bi 61.2 19 0.00041 28.7 4.8 44 113-158 3-46 (70)
204 cd01771 Faf1_UBX Faf1 UBX doma 61.1 40 0.00086 27.5 6.9 68 110-180 5-77 (80)
205 cd00754 MoaD Ubiquitin domain 60.0 39 0.00084 26.6 6.6 56 121-181 17-74 (80)
206 cd01760 RBD Ubiquitin-like dom 60.0 19 0.00042 28.9 4.7 45 112-158 2-46 (72)
207 cd06408 PB1_NoxR The PB1 domai 59.5 53 0.0011 27.5 7.3 46 33-79 2-47 (86)
208 cd01760 RBD Ubiquitin-like dom 58.3 29 0.00063 27.9 5.5 44 36-79 2-46 (72)
209 PRK06437 hypothetical protein; 57.9 61 0.0013 25.4 7.2 54 118-182 9-62 (67)
210 smart00455 RBD Raf-like Ras-bi 56.3 33 0.00072 27.3 5.5 40 40-79 7-46 (70)
211 KOG0608 Warts/lats-like serine 56.1 9.2 0.0002 43.0 2.9 36 412-456 742-777 (1034)
212 PF10790 DUF2604: Protein of U 55.7 38 0.00082 26.9 5.4 66 40-106 3-72 (76)
213 KOG4250 TANK binding protein k 55.5 32 0.00068 39.0 6.9 48 34-81 314-363 (732)
214 PF10790 DUF2604: Protein of U 55.2 42 0.00092 26.6 5.6 68 117-184 3-72 (76)
215 PF12754 Blt1: Cell-cycle cont 54.1 4.2 9.1E-05 41.5 0.0 68 27-95 72-160 (309)
216 cd05992 PB1 The PB1 domain is 53.7 43 0.00092 26.4 5.9 45 35-79 2-47 (81)
217 cd06398 PB1_Joka2 The PB1 doma 53.3 50 0.0011 27.7 6.3 44 35-78 2-51 (91)
218 cd06409 PB1_MUG70 The MUG70 pr 52.6 32 0.00068 28.8 4.9 39 39-77 7-48 (86)
219 smart00295 B41 Band 4.1 homolo 52.4 91 0.002 28.7 8.8 39 32-70 2-41 (207)
220 cd06396 PB1_NBR1 The PB1 domai 51.1 59 0.0013 26.9 6.2 41 35-77 2-44 (81)
221 KOG4583 Membrane-associated ER 50.4 9.7 0.00021 39.3 1.9 73 31-104 7-86 (391)
222 PF14836 Ubiquitin_3: Ubiquiti 50.1 1.2E+02 0.0025 25.6 7.9 62 120-184 14-81 (88)
223 PRK05863 sulfur carrier protei 49.9 53 0.0011 25.4 5.6 62 37-107 2-63 (65)
224 smart00666 PB1 PB1 domain. Pho 49.5 46 0.001 26.3 5.5 40 118-159 9-48 (81)
225 KOG2086 Protein tyrosine phosp 49.2 27 0.00059 36.7 4.9 68 32-100 306-376 (380)
226 KOG4250 TANK binding protein k 48.6 45 0.00098 37.8 6.8 67 117-189 322-392 (732)
227 PF08337 Plexin_cytopl: Plexin 47.7 34 0.00074 37.8 5.6 66 120-185 202-291 (539)
228 PRK08364 sulfur carrier protei 46.9 1.1E+02 0.0024 24.0 7.1 50 121-181 15-64 (70)
229 PRK06083 sulfur carrier protei 46.7 1.2E+02 0.0025 25.1 7.4 67 32-106 15-81 (84)
230 KOG3316 Transport protein part 45.0 9 0.0002 35.3 0.6 59 280-344 94-152 (163)
231 PF14453 ThiS-like: ThiS-like 44.8 43 0.00094 25.8 4.2 55 34-104 1-55 (57)
232 PLN02799 Molybdopterin synthas 43.7 92 0.002 24.9 6.4 60 43-108 19-81 (82)
233 smart00144 PI3K_rbd PI3-kinase 43.3 1.6E+02 0.0034 25.3 8.1 75 31-106 15-105 (108)
234 COG0661 AarF Predicted unusual 43.2 17 0.00038 39.9 2.6 28 424-455 285-312 (517)
235 PRK07440 hypothetical protein; 43.2 1.4E+02 0.0031 23.5 7.2 63 36-106 5-67 (70)
236 PRK05659 sulfur carrier protei 43.0 1.2E+02 0.0026 23.1 6.7 61 38-106 3-63 (66)
237 PF09192 Act-Frag_cataly: Acti 42.5 6.8 0.00015 39.5 -0.6 138 274-454 32-207 (275)
238 cd06411 PB1_p51 The PB1 domain 41.9 67 0.0015 26.4 5.2 35 44-78 8-42 (78)
239 smart00144 PI3K_rbd PI3-kinase 40.9 1.3E+02 0.0028 25.8 7.2 67 119-185 28-106 (108)
240 TIGR01682 moaD molybdopterin c 40.9 1.2E+02 0.0026 24.1 6.7 61 43-109 16-80 (80)
241 cd00565 ThiS ThiaminS ubiquiti 40.5 79 0.0017 24.2 5.3 62 39-108 3-64 (65)
242 COG5100 NPL4 Nuclear pore prot 39.7 1.2E+02 0.0027 32.3 7.9 72 110-182 1-78 (571)
243 TIGR01687 moaD_arch MoaD famil 39.7 1.1E+02 0.0023 24.7 6.3 62 43-109 16-88 (88)
244 PF02505 MCR_D: Methyl-coenzym 38.5 2E+02 0.0044 26.5 8.3 110 45-171 6-121 (153)
245 KOG3439 Protein conjugation fa 37.0 1.2E+02 0.0027 26.5 6.3 52 31-82 28-84 (116)
246 PF02597 ThiS: ThiS family; I 36.5 46 0.001 25.9 3.5 61 118-181 11-71 (77)
247 COG2104 ThiS Sulfur transfer p 35.7 1.8E+02 0.0039 23.0 6.7 62 35-104 2-63 (68)
248 COG5032 TEL1 Phosphatidylinosi 35.1 15 0.00033 47.0 0.6 41 413-456 1932-1972(2105)
249 KOG0007 Splicing factor 3a, su 35.0 17 0.00036 37.8 0.8 57 32-89 280-339 (341)
250 PF02196 RBD: Raf-like Ras-bin 34.8 1.3E+02 0.0028 23.8 5.8 40 40-79 8-47 (71)
251 TIGR01682 moaD molybdopterin c 34.7 2.1E+02 0.0045 22.7 7.1 55 122-181 18-74 (80)
252 PF02597 ThiS: ThiS family; I 34.5 1.6E+02 0.0034 22.8 6.3 63 44-109 13-77 (77)
253 PF14533 USP7_C2: Ubiquitin-sp 34.3 37 0.0008 32.7 3.1 40 32-71 114-161 (213)
254 TIGR02958 sec_mycoba_snm4 secr 33.7 1.5E+02 0.0033 32.0 7.9 75 34-109 3-84 (452)
255 cd06411 PB1_p51 The PB1 domain 33.6 73 0.0016 26.2 4.1 37 120-158 7-43 (78)
256 TIGR01683 thiS thiamine biosyn 33.4 1.4E+02 0.0029 22.9 5.6 62 39-108 2-63 (64)
257 PRK08053 sulfur carrier protei 32.7 2.3E+02 0.005 21.8 7.0 63 38-108 3-65 (66)
258 KOG4572 Predicted DNA-binding 32.2 97 0.0021 35.9 6.1 79 118-198 3-85 (1424)
259 PRK04750 ubiB putative ubiquin 32.0 28 0.0006 38.5 2.0 36 420-455 276-311 (537)
260 PF02196 RBD: Raf-like Ras-bin 31.5 1.2E+02 0.0026 24.1 5.1 53 113-167 4-58 (71)
261 PLN02799 Molybdopterin synthas 31.5 1.7E+02 0.0037 23.3 6.2 57 120-181 19-76 (82)
262 PRK06488 sulfur carrier protei 31.1 2.2E+02 0.0047 21.7 6.4 55 117-181 5-59 (65)
263 PRK07696 sulfur carrier protei 31.0 2.1E+02 0.0045 22.3 6.3 62 38-107 3-65 (67)
264 KOG2086 Protein tyrosine phosp 30.8 60 0.0013 34.2 4.1 69 110-179 306-377 (380)
265 cd01817 RGS12_RBD Ubiquitin do 29.7 1.4E+02 0.003 24.2 5.1 40 41-80 8-47 (73)
266 KOG0892 Protein kinase ATM/Tel 29.6 22 0.00047 45.7 0.7 40 414-456 2616-2655(2806)
267 PF11069 DUF2870: Protein of u 29.4 76 0.0016 27.2 3.7 32 153-185 3-34 (98)
268 PF12754 Blt1: Cell-cycle cont 29.2 18 0.00039 37.0 0.0 41 129-171 103-158 (309)
269 PRK06944 sulfur carrier protei 29.0 2.5E+02 0.0055 21.1 6.9 62 38-108 3-64 (65)
270 PF00564 PB1: PB1 domain; Int 28.8 2E+02 0.0043 22.6 6.1 39 118-158 9-48 (84)
271 cd05992 PB1 The PB1 domain is 28.1 1.3E+02 0.0029 23.5 4.9 40 118-159 8-48 (81)
272 PF00788 RA: Ras association ( 27.6 3.1E+02 0.0068 21.7 7.3 33 44-76 18-52 (93)
273 PF04639 Baculo_E56: Baculovir 27.1 77 0.0017 32.2 3.9 37 245-291 119-155 (305)
274 KOG2982 Uncharacterized conser 27.1 90 0.0019 32.5 4.4 57 45-101 350-413 (418)
275 TIGR01687 moaD_arch MoaD famil 26.7 2.8E+02 0.006 22.3 6.7 57 121-181 17-82 (88)
276 cd06397 PB1_UP1 Uncharacterize 26.5 1.7E+02 0.0037 24.3 5.1 43 36-78 3-45 (82)
277 PF00794 PI3K_rbd: PI3-kinase 26.5 3E+02 0.0064 23.2 7.0 63 30-93 13-85 (106)
278 PF00788 RA: Ras association ( 26.4 1.7E+02 0.0037 23.3 5.4 35 121-155 18-52 (93)
279 cd01768 RA RA (Ras-associating 26.1 2.4E+02 0.0052 22.5 6.2 28 42-69 12-39 (87)
280 PF10209 DUF2340: Uncharacteri 25.8 1.2E+02 0.0025 27.1 4.4 56 48-103 21-106 (122)
281 PF14451 Ub-Mut7C: Mut7-C ubiq 25.7 2.7E+02 0.0058 22.8 6.3 52 119-181 22-74 (81)
282 cd06408 PB1_NoxR The PB1 domai 25.2 2.2E+02 0.0048 23.8 5.7 45 112-159 3-48 (86)
283 PF10209 DUF2340: Uncharacteri 24.6 1.8E+02 0.0039 25.9 5.3 58 125-182 21-107 (122)
284 KOG2689 Predicted ubiquitin re 23.9 3.1E+02 0.0068 27.8 7.5 72 30-101 207-283 (290)
285 PF02017 CIDE-N: CIDE-N domain 23.5 1.6E+02 0.0035 24.1 4.6 51 130-186 21-74 (78)
286 TIGR02958 sec_mycoba_snm4 secr 23.5 2.5E+02 0.0054 30.4 7.3 72 110-182 3-79 (452)
287 cd00565 ThiS ThiaminS ubiquiti 23.5 2.6E+02 0.0057 21.3 5.6 56 117-181 4-59 (65)
288 PF02824 TGS: TGS domain; Int 23.2 1.5E+02 0.0033 22.5 4.2 59 112-181 1-59 (60)
289 PF00794 PI3K_rbd: PI3-kinase 23.0 1.1E+02 0.0024 25.8 3.8 74 110-183 17-102 (106)
290 cd01768 RA RA (Ras-associating 22.4 2.2E+02 0.0048 22.7 5.3 37 119-155 12-48 (87)
291 KOG2982 Uncharacterized conser 22.3 1E+02 0.0022 32.0 3.8 55 124-180 352-414 (418)
292 cd01777 SNX27_RA Ubiquitin dom 21.2 1.8E+02 0.0039 24.4 4.4 40 35-74 3-43 (87)
293 cd01615 CIDE_N CIDE_N domain, 21.0 2.5E+02 0.0054 23.1 5.1 50 130-186 21-74 (78)
294 KOG0007 Splicing factor 3a, su 20.9 39 0.00085 35.0 0.6 50 116-167 289-339 (341)
295 PF11069 DUF2870: Protein of u 20.5 82 0.0018 27.0 2.3 32 74-107 3-34 (98)
296 cd01764 Urm1 Urm1-like ubuitin 20.2 1.8E+02 0.0038 24.4 4.3 20 124-143 23-42 (94)
297 cd01817 RGS12_RBD Ubiquitin do 20.1 2E+02 0.0044 23.3 4.4 42 116-159 6-47 (73)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-47 Score=373.38 Aligned_cols=185 Identities=47% Similarity=0.745 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCCCccccCCCCcEEEEEecCCCeEEEEEecCCCCCCCcCCCCCCCCCCCCC-cccCCccCCCchhh-hee
Q 012653 260 SSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGE-GLKKGTRAGEGALR-EVA 337 (459)
Q Consensus 260 ~~~~~~~~~g~~p~~~~~gs~g~y~~~~~~g~~~~~vfKP~deEp~~~~nP~~~~~~~~~~-~~~~~~~~g~~~~r-Eva 337 (459)
.++..|++.|+.|++++.|++|+|||++..|. .+|||||+|||||+.+||+|++|...++ |++|++++|+++.| |+|
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~-~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~a 80 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGW-IVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAA 80 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccc-eeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhh
Confidence 56788999999999999999999999999995 5999999999999999999999987764 89999999887777 999
Q ss_pred eeeeccCCCCcccccccccCCCCCCceEEEEeccccccCCCCCCC--CCCCcceeeEeeeecCcCCcccCCCCCCChhhh
Q 012653 338 AYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKH--DLENVKIGSLQMFVENVGSCEEMGPRAFPVDEV 415 (459)
Q Consensus 338 Aylld~~~~~~~~~~~~~~g~~~VP~T~~v~~~~~~f~~~~~~~~--~~~~~k~GSlQ~fv~~~~~~~~~~~~~f~~~ev 415 (459)
||||||+ +|+.||+|.+++++|+.|||++++.. .....|+||+|+||++ .++.|++...|+++|+
T Consensus 81 ayLlD~~------------~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~ 147 (286)
T KOG2381|consen 81 AYLLDHP------------EFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEG-YSAADYGLRRFEAEEV 147 (286)
T ss_pred hhccCcc------------ccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcC-ccccceeEEecccccc
Confidence 9999985 89999999999999999999987532 2333799999999999 7788999999999999
Q ss_pred hheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcCCC
Q 012653 416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (459)
Q Consensus 416 ~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~P~ 458 (459)
|||+||||||+|||||+|||||++..........+|||||||.
T Consensus 148 hkivvlD~ri~NtDRh~~N~lvk~~~~~~~~~~~~Dhgl~fP~ 190 (286)
T KOG2381|consen 148 HKIVVLDIRIRNTDRHAGNWLVKKEPTLEQAAILGDHGLCFPE 190 (286)
T ss_pred ceeEEEEEEeeccCCCCCceeEEeccCcccccccccCceeCcc
Confidence 9999999999999999999999997434334566799999997
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=3.2e-39 Score=308.77 Aligned_cols=144 Identities=30% Similarity=0.518 Sum_probs=125.8
Q ss_pred HcCCCCc--cccCCCCcEEEEEec-CCCeEEEEEecCCCCCCCcCCCCCCCCCCCCCcccCCccCCCchhhheeeeeecc
Q 012653 267 ERGNEPI--PSSEGSGGAYFMQDS-SGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDH 343 (459)
Q Consensus 267 ~~g~~p~--~~~~gs~g~y~~~~~-~g~~~~~vfKP~deEp~~~~nP~~~~~~~~~~~~~~~~~~g~~~~rEvaAylld~ 343 (459)
..|.+.+ ++.++||+||++... .|....|||||..+|.++|+||.| |+ |.||+|||+||
T Consensus 2 ~~Gel~v~gri~~aSN~t~~~~~~~~~~~~~~VYKPv~gErPLWDFpdG-------------tL----a~REvAAYlvs- 63 (253)
T TIGR03843 2 RDGELTVLGRLVDASNATLLCEVTLGGVSARAVYKPVRGERPLWDFPDG-------------TL----AGREVAAYLVS- 63 (253)
T ss_pred CcceEEEEEEEccccceeEEEEEecCCeeEEEEECCcCCccccccCCCC-------------ch----HHHHHHHHHHH-
Confidence 3455556 799999999999965 345678999999999999999999 77 99999999999
Q ss_pred CCCCcccccccccCCCCCCceEEEEeccccccCCCCCCCCCCCcceeeEeeeecCcCC--------cccCCCCCCCh---
Q 012653 344 PRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGS--------CEEMGPRAFPV--- 412 (459)
Q Consensus 344 ~~~~~~~~~~~~~g~~~VP~T~~v~~~~~~f~~~~~~~~~~~~~k~GSlQ~fv~~~~~--------~~~~~~~~f~~--- 412 (459)
+++||++||+|++++ | |.|+||+|.||+++.+ +++.++++|++
T Consensus 64 ----------~~lGw~~VPpTvlrD----------G------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~ 117 (253)
T TIGR03843 64 ----------EALGWGLVPPTVLRD----------G------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRA 117 (253)
T ss_pred ----------HHhCCCcCCCeeeec----------C------CCCCceEEEeccCCCccchhhcccccccCCcccccccc
Confidence 689999999999974 4 7899999999999754 45777888863
Q ss_pred ---------------hhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcCCC
Q 012653 413 ---------------DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (459)
Q Consensus 413 ---------------~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~P~ 458 (459)
.++|||+|||++|+|+|||+||||+.++ | +++|||||||||.
T Consensus 118 ~d~~g~~v~l~h~d~~~l~riaVfDi~inNaDRk~GhiL~~~d--g--~l~~IDHGl~f~~ 174 (253)
T TIGR03843 118 EDEEGEPVVLVHADHPQLRRMAVFDALVNNADRKGGHVLPGPD--G--RVWGVDHGVCFHV 174 (253)
T ss_pred ccccCcceeecccccHHHhhhhhheeeeecCCCCCCcEeEcCC--C--cEEEecCceecCC
Confidence 3699999999999999999999999986 5 4899999999996
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.71 E-value=4.2e-17 Score=139.77 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=87.4
Q ss_pred ccCcccccceeeeeecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCccccc
Q 012653 91 DYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170 (459)
Q Consensus 91 dygI~~gstl~LvlrLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy 170 (459)
.+.+.+-+++|+.+++++.|+|+|++..|+++.++|++++||.+||++|++++|++ +++|+|+|+|+.|+|+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHc
Confidence 45677788999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CCCCCCEEEEEEee
Q 012653 171 CKRNEAVIHLLVRK 184 (459)
Q Consensus 171 ~I~~~svI~L~vrk 184 (459)
+|+++++|||.++.
T Consensus 87 ~I~~~stL~l~~~l 100 (103)
T cd01802 87 NISEGCTLKLVLAM 100 (103)
T ss_pred CCCCCCEEEEEEec
Confidence 99999999998873
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.64 E-value=4.4e-16 Score=125.18 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=70.7
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+|+|++.+|+++.++|++++||++||++|++++|++ +++|+|+|+|++|+|+++|++|+|+++++|+|++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999998 999999999999999999999999999999999874
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.62 E-value=1.6e-15 Score=130.06 Aligned_cols=79 Identities=29% Similarity=0.517 Sum_probs=75.0
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
..+.|+|+| ++.|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.+
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-DEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEecCC
Confidence 377999999 889999999999999999999999999999999999999999998 899999999999999999999876
Q ss_pred c
Q 012653 109 L 109 (459)
Q Consensus 109 ~ 109 (459)
+
T Consensus 103 G 103 (103)
T cd01802 103 G 103 (103)
T ss_pred C
Confidence 4
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.61 E-value=1.4e-15 Score=122.39 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=69.4
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+|+. +++++++|++++||++||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|++++++|+++++.++
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 7899953 478999999999999999999999999999999999999998 8999999999999999999998764
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.60 E-value=2.1e-15 Score=121.28 Aligned_cols=72 Identities=25% Similarity=0.470 Sum_probs=69.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
|+|+| +..|++++++|.+++||++||.+|+++.|+++++|+|+|+|++|. |+.+|++|||++++++||+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcC
Confidence 79999 789999999999999999999999999999999999999999998 8999999999999999999874
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.60 E-value=2.6e-15 Score=120.90 Aligned_cols=75 Identities=23% Similarity=0.533 Sum_probs=71.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+| +++|+++++++.+++||++||.+|++..|+|++.|+|+|+|++|. |+.+|++|+|++++++|+++++.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 79999 889999999999999999999999999999999999999999998 8999999999999999999998763
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.57 E-value=5.6e-15 Score=118.83 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=67.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+|+||+ +++++++|++++||++||++|++++|+| +++|+|+|+|++|+|+++|++|+++++++|||++|.
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRL 71 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 7899998 4789999999999999999999999998 999999999999999999999999999999999874
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.57 E-value=6e-15 Score=120.25 Aligned_cols=74 Identities=26% Similarity=0.266 Sum_probs=69.9
Q ss_pred cceeeeeeccee-eeee-ccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKV-FEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~-~~ie-V~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
|+|+|++.+|++ +.++ +++++||++||++|++..|+| +++|+|+|+|+.|+|+++|++|+++++++|+|++|..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999997 6895 899999999999999999998 9999999999999999999999999999999998853
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.56 E-value=1.1e-14 Score=117.13 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=70.8
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+|+||+.+|+++.++|++++||++||++|++..|+| +++|+|+|+|+.|+|..+|++|+++++++||+.++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999998 999999999999999999999999999999999874
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.55 E-value=1.1e-14 Score=115.67 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=67.3
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
|+|++..|+++.++|++++||+++|++|+++.|++ +++|+|+|+|++|+|+.+|++|+++++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999998 89999999999999999999999999999999765
No 13
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.55 E-value=1e-14 Score=118.90 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=69.0
Q ss_pred EEEEE-EeCCeE-EEEE-eCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 34 ILIFL-SVGGSV-IPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 34 M~I~V-tl~G~~-~~l~-V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
|+|+| ++.|++ ++++ +.+++||.+||.+|++.+|+|+++|+|+|+|++|. |+.+|++|||+++++|+|++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence 89999 889987 6895 89999999999999999999999999999999998 99999999999999999999874
No 14
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.54 E-value=2.4e-14 Score=115.46 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=70.9
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCC--CCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gi--p~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
|+|+|++.+|+++.++|++++||++||++|++.+|+ + +++|+|+|+|+.|+|+.+|++|+++++++|++.++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYP--PEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCC--hhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999998 6 9999999999999999999999999999999988765
No 15
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.54 E-value=2e-14 Score=115.68 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=68.5
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+||+..|++++++|++++||++||++|++..|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|.++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEc
Confidence 68999999999999999999999999999999998 999999999999999999999999999999998874
No 16
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.53 E-value=2.1e-14 Score=115.03 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=71.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+| ++.|+++.+++.+++||++||.+|++..|+|+..|+|+|+|+.|. |+.+|++|+|++++++|+++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 78999 788999999999999999999999999999999999999999998 8899999999999999999998764
No 17
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.53 E-value=1.7e-14 Score=116.09 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=69.2
Q ss_pred EEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 36 I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+| ++.|++++++|++++||++||.+|++..|+|+++|+|+|+|++|. |+.+|++|||+++++++|++++.++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 678 789999999999999999999999999999999999999999998 8899999999999999999988653
No 18
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.53 E-value=2.6e-14 Score=114.53 Aligned_cols=75 Identities=29% Similarity=0.572 Sum_probs=71.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+| +++|+++.+++.+++||++||.+|++..|+|+..|+|+|+|+.|. |+.+|++|+|+++++||++++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 78999 789999999999999999999999999999999999999999998 8899999999999999999988763
No 19
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.6e-15 Score=127.69 Aligned_cols=75 Identities=36% Similarity=0.622 Sum_probs=72.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|++ ++.|+|++++|+|++||..||.+|+.++|+|+++|+|+|+|++|+ |..||.+|||+..+|+|++++|.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhHHHhcC
Confidence 56777 999999999999999999999999999999999999999999998 9999999999999999999999877
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.51 E-value=5.3e-14 Score=112.72 Aligned_cols=73 Identities=26% Similarity=0.394 Sum_probs=70.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+|+|++.+|+++.++|+++.||++||++|++..|+| +++|+|+|+|+.|+|+++|++|+++++++|||+++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999999874
No 21
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.51 E-value=3.6e-14 Score=113.33 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=65.5
Q ss_pred eeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 113 ~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
.||+.+|+++.++|++++||+++|++|++++|+| +++|+|+|+|+.|+|+.+|.+|+++++++|||.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 5788999999999999999999999999999998 9999999999999999999999999999999976
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.50 E-value=6.3e-14 Score=112.25 Aligned_cols=73 Identities=33% Similarity=0.454 Sum_probs=70.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+|+|++.+|+.+.++|++++||++||++|++..++| +++|+|+|+|+.|+|+.+|++|+++++++|+++++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999999874
No 23
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.49 E-value=7.4e-14 Score=113.69 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=70.7
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.|+|+| ++.|+.+.+++++++||++||.+|+++.|+++++|+|+|.|+.|. |+ +|++|||+++++|+|+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeecccc
Confidence 499999 788999999999999999999999999999999999999999998 77 9999999999999999988655
No 24
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.49 E-value=6.3e-14 Score=112.86 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=66.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
|+|+| ++.|+.+.++|++++||.+||.+|+++.|+++++|+|+|.|+.|. |+.+|++|||+++++|||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence 89999 788999999999999999999999999999999999999999998 88999999999999999864
No 25
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.49 E-value=8e-14 Score=110.50 Aligned_cols=72 Identities=28% Similarity=0.343 Sum_probs=69.2
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
|+|+|++.+|+++.+++++++||++||++|++..|++ ++.|+|+|+|+.|+|+++|++|+++++++|||+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999988 99999999999999999999999999999999764
No 26
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.49 E-value=5.6e-14 Score=113.17 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=67.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|+|+|++..|+.+.++|++++||++||++|+++.+++ +++|+|+|.|+.|+|+.+|++|+++++++|||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999985
No 27
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.48 E-value=6.6e-14 Score=111.27 Aligned_cols=69 Identities=22% Similarity=0.470 Sum_probs=65.5
Q ss_pred EEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 36 I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|+| ++.|+++.++|++++||++||.+|+++.|+|+.+|+|+|+|++|. |+.+|++|+|++++++||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEeC
Confidence 577 788999999999999999999999999999999999999999998 899999999999999999864
No 28
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.46 E-value=1.3e-13 Score=112.58 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=70.8
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEE--EECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL--ICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~L--i~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
|+|+|++..|+++.++|+++.||++||++|++..+++ +++|+| +|+|+.|+|+.+|++|+++++++|+|++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999988 999999 8999999999999999999999999998864
No 29
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.46 E-value=2e-13 Score=110.07 Aligned_cols=71 Identities=20% Similarity=0.454 Sum_probs=68.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCC--CCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|+|+| +.+|+++.+++.+++||.+||.+|++++|+ ++++|+|+|+|+.|. |+.+|++|||++++++++.++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEe
Confidence 89999 889999999999999999999999999999 999999999999998 889999999999999998775
No 30
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.45 E-value=1.9e-13 Score=108.28 Aligned_cols=71 Identities=28% Similarity=0.488 Sum_probs=67.7
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|+|+| ++.|+++++++.+++||.+||.+|++..|++++.|+|+|+|+.|. |+.+|++|||++++++|++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 78999 788999999999999999999999999999999999999999998 889999999999999998764
No 31
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.45 E-value=1.3e-13 Score=110.14 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=63.5
Q ss_pred EE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 37 FL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 37 ~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.| .++|++++++|++++||++||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++|||.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 45 568999999999999999999999999999999999999999998 89999999999999999976
No 32
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.3e-14 Score=127.79 Aligned_cols=75 Identities=35% Similarity=0.620 Sum_probs=73.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+||| ++.++++++++.+++||..+|.+||..+|||+++|||+|.|++|+ |+.+|+||+|+..+++||+++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEEEecCC
Confidence 78999 999999999999999999999999999999999999999999998 8999999999999999999999876
No 33
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.44 E-value=2.4e-13 Score=108.37 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=66.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
+.|+|++..|+ ..++++++.||++||++|++..|++ +++|+|+|+|+.|+|+.+|++|+++++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 5899999999999999999999987 99999999999999999999999999999999875
No 34
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.44 E-value=2.6e-13 Score=110.47 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=69.0
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
.|+|+|++..|+.+.++|+++.||++||++|+++.+++ +++|+|+|+|+.|+|+ +|.+||++++++|+|+...
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP--KERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 38899999999999999999999999999999999988 9999999999999999 9999999999999998654
No 35
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.43 E-value=4.6e-13 Score=105.56 Aligned_cols=68 Identities=31% Similarity=0.528 Sum_probs=65.1
Q ss_pred eeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 115 kt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
||.+|+.+.++|++++||.+||++|++..++| +++|+|+|+|++|+|+.+|.+|+++++++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57889999999999999999999999999988 999999999999999999999999999999998764
No 36
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.8e-14 Score=105.23 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=67.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|.|.|+|++|+.+.++++++++|..+|++|.+++|+| |.+|+|+|.|++|.|+.+-.+|++..||+|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCC--chhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999 999999999999999999999999999999984
No 37
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.6e-14 Score=105.28 Aligned_cols=69 Identities=28% Similarity=0.587 Sum_probs=66.7
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
|.|.| +++|+.+.++++|+|+|+.+|++|++++|||+.+|||+|.|++|. |+.+-++|++.-|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence 67899 999999999999999999999999999999999999999999998 8999999999999999985
No 38
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.4e-14 Score=120.66 Aligned_cols=72 Identities=33% Similarity=0.470 Sum_probs=69.9
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
|++++++++|++++++|++++||.+||++|+.++|+| +++|+|+|+|++|||++|+++|+++..++||++.|
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCC--HHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence 6789999999999999999999999999999999999 99999999999999999999999999999999877
No 39
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.40 E-value=5.8e-13 Score=108.81 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=68.1
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEE--EEcCeecccCCccccccCcccccceeeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKL--VFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrL--vf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|+|+| ++.|+++.+++++++||++||.+|++..|+++++|+| +|.|+.|. |+.+|++|||.++++|+|+++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence 89999 7899999999999999999999999999999999999 89999998 889999999999999999887
No 40
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.40 E-value=6.1e-13 Score=106.32 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=64.1
Q ss_pred eeeeee-cceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEE
Q 012653 112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLL 181 (459)
Q Consensus 112 I~Vkt~-~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~-~tL~dy~I~~~svI~L~ 181 (459)
|+|++. +|+++.++|++++||++||++|++++|+| +++|+|+|+|+.|+|+ .+|++|+++++++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 99999999999999999999999999998 9999999999999987 68999999999999974
No 41
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.40 E-value=5.7e-13 Score=107.81 Aligned_cols=70 Identities=27% Similarity=0.476 Sum_probs=66.4
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 39 tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.++|+++++++++++||++||.+|+...|+|+++|+|+|.|+.|. |+.+|++|+|+++++||+++++.++
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 468999999999999999999999999999999999999999998 8899999999999999999998764
No 42
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.40 E-value=6.4e-13 Score=105.93 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=65.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|.|+| +..|+ ..+++++++||.+||.+|+++.|+++.+|+|+|+|+.|. |+.+|++|||+++++||++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEEC
Confidence 46888 77887 489999999999999999999999999999999999998 889999999999999999875
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.38 E-value=8.8e-13 Score=105.42 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=61.8
Q ss_pred EEE-Ee-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCC-ccccccCcccccceeee
Q 012653 36 IFL-SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV 103 (459)
Q Consensus 36 I~V-tl-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstl~Lv 103 (459)
|+| +. .|+++.++|++++||++||.+|++++|+|++.|+|+|+|++|. |+ .+|++|||+++++++|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~-D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELV-DNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEcc-CCcccHHHcCCCCCCEEEEe
Confidence 466 55 7899999999999999999999999999999999999999998 55 78999999999999874
No 44
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.3e-13 Score=122.39 Aligned_cols=72 Identities=33% Similarity=0.475 Sum_probs=70.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
|+|+|+++.++++.++|++++||..+|++|+.+++|| +++|+|+|.|++|+|+++|+||+|+..++|||+++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCC--chhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence 7899999999999999999999999999999999999 99999999999999999999999999999999987
No 45
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.37 E-value=1.6e-12 Score=102.42 Aligned_cols=67 Identities=30% Similarity=0.659 Sum_probs=63.8
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 39 tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
+++|++++++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||.++++|+|+++.
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~-d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD-DDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES-TTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc-CcCcHHHcCCCCCCEEEEEEec
Confidence 357899999999999999999999999999999999999999996 9999999999999999998875
No 46
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.32 E-value=4.6e-12 Score=100.29 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=65.6
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
|+|+|+..|+++.+++.+++||++||.+|++.+|+|++.|+|+|+|+.|. |+.+|++|||++|++|+++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence 57888667999999999999999999999999999999999999999998 88999999999999998763
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.31 E-value=8.6e-12 Score=103.64 Aligned_cols=81 Identities=15% Similarity=0.317 Sum_probs=76.0
Q ss_pred CCCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 28 KLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 28 ~~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
+.....|+|+| +.+|+++.++|.+++++..||.+++++.|+++++|+|+|+|+.|. ++.|+.+|+++++++|++++++
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEEec
Confidence 44588999999 788999999999999999999999999999999999999999998 8999999999999999999988
Q ss_pred ccc
Q 012653 107 SDL 109 (459)
Q Consensus 107 sd~ 109 (459)
.++
T Consensus 85 ~GG 87 (87)
T cd01763 85 TGG 87 (87)
T ss_pred ccC
Confidence 764
No 48
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.30 E-value=6.9e-12 Score=101.46 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=63.7
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
++|+++.++|++++||++||++|+...|+| +++|+|+|+|+.|+|+++|++|+++++++|+|+++..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999999999998 9999999999999999999999999999999998753
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.29 E-value=6.4e-12 Score=99.49 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=65.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
++|+|++. |+.+.++++++.||++||++|++..|++ +++|+|+|+|+.|+|..+|++|+++++++|+++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 46889986 9999999999999999999999999998 999999999999999999999999999999986
No 50
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.29 E-value=6.1e-12 Score=102.61 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=63.3
Q ss_pred cceeeeeeccee--eeeeccCCChHHHHHHHHHHhcC-CCCCCCcEEEEECCEEcCCCCcccccC--CCCCCEEEEEE
Q 012653 110 QAITVTTVCGKV--FEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDIC--KRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~Gk~--~~ieV~~~~TV~~LK~kI~~~~g-ip~~~~~Q~Li~~Gk~LeD~~tL~dy~--I~~~svI~L~v 182 (459)
+.|+||+.++++ |.+++++++||++||++|++..+ .+ ++++|+|+|+|+.|+|..+|++|. +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 578999999998 55666899999999999999874 33 379999999999999999999996 99999999974
No 51
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.28 E-value=1e-11 Score=100.27 Aligned_cols=69 Identities=16% Similarity=0.370 Sum_probs=65.1
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE---cCeecccCCccccccCcccccceeee
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
|.|.|+..|+++.++|++++||++||++|++.+|+|+++|+|+| .|+.|. |+.+|++|+|.+++.++|+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEE
Confidence 56888999999999999999999999999999999999999996 899998 8999999999999999875
No 52
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.24 E-value=1.3e-11 Score=100.66 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=62.3
Q ss_pred CEEEEE-EeCCeE--EEEEeCCCCCHHHHHHHHHHHhC--CCCcceEEEEcCeecccCCccccccC--cccccceeeee
Q 012653 33 SILIFL-SVGGSV--IPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYG--LADGNVLHLVL 104 (459)
Q Consensus 33 sM~I~V-tl~G~~--~~l~V~~~dTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dyg--I~~gstl~Lvl 104 (459)
.|.|+| +.++++ +.+++++++||.+||.+|++..+ .++++|+|+|.|+.|. |+.+|++|. +.++.++||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence 478899 678887 56666899999999999999874 5589999999999998 899999996 99999999974
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.23 E-value=2.1e-11 Score=98.66 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=61.6
Q ss_pred EEEE--E-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcc-cccceeeee
Q 012653 35 LIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-DGNVLHLVL 104 (459)
Q Consensus 35 ~I~V--t-l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-~gstl~Lvl 104 (459)
+++| + ..|.+++++|.+++||++||.+|++++|+|++.|+| |.|+.|.+|+.+|++||++ +|+++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4566 2 357899999999999999999999999999999999 9999997677999999999 789999864
No 54
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.23 E-value=4.2e-11 Score=99.48 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=72.3
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
+..|.|+|++.+|+.+.++|.+++++..||++++++.|++ +++|+|+|+|+.|+++.|+.+|+++++++|+++++.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 4568899999999999999999999999999999999998 899999999999999999999999999999998874
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=3.7e-11 Score=124.57 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=71.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcC---CCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~g---ip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
|+|+|||..|+++.|+|++++||.+||++|+...| ++ +++|+|+|+|+.|+|+++|.+|+|+++++|++++.++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK 78 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence 78999999999999999999999999999999998 77 99999999999999999999999999999999988654
Q ss_pred c
Q 012653 187 K 187 (459)
Q Consensus 187 k 187 (459)
.
T Consensus 79 ~ 79 (378)
T TIGR00601 79 T 79 (378)
T ss_pred C
Confidence 4
No 56
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.16 E-value=8.5e-11 Score=94.87 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=63.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE---CCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~---~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|.|.|+ ..|+++.++|++++||++||++|++..++| +++|+|+| +|+.|+|+.+|++|++++++.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 356666 578999999999999999999999999988 99999996 9999999999999999999999985
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.13 E-value=1.1e-10 Score=89.81 Aligned_cols=64 Identities=27% Similarity=0.343 Sum_probs=60.2
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA 176 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~s 176 (459)
|+|+|++.+ +.+.++|+++.||++||++|+...+++ ++.|+|+|+|+.|+|+.+|++|++++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 679999988 789999999999999999999999988 8999999999999999999999998875
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.12 E-value=6.1e-11 Score=95.67 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHh--CCC-CcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 51 ESDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 51 ~~dTV~~LK~kIq~~~--Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.++||.+||.+|+++. |++ +++|+|+|.|++|. |+.+|++|||+++++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~-D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLK-DDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCC-CCCcHHHcCCCCCCEEEEEe
Confidence 3899999999999995 575 99999999999998 89999999999999999975
No 59
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.12 E-value=1.5e-10 Score=88.92 Aligned_cols=64 Identities=27% Similarity=0.532 Sum_probs=58.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccccc
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs 98 (459)
|+|+|+..+.++.++|.+++||++||.+|++..|+++..|+|+|+|+.|. |+.+|++|||.+++
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 78999443379999999999999999999999999999999999999998 88999999999874
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.09 E-value=1.3e-10 Score=93.78 Aligned_cols=56 Identities=29% Similarity=0.285 Sum_probs=49.6
Q ss_pred ccC-CChHHHHHHHHHHhc--CCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 126 VER-GRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 126 V~~-~~TV~~LK~kI~~~~--gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
|.+ ++||.+||++|+++. +++ ++++|+|+|+|+.|+|+++|++|+|+++++|||+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 444 679999999999995 454 38999999999999999999999999999999964
No 61
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=2.4e-10 Score=118.53 Aligned_cols=71 Identities=17% Similarity=0.453 Sum_probs=67.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhC---CCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~G---ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|+|+| ++.|+++.|+|++++||.+||.+|+...| +++++|+|+|.|++|. |+.+|++|+|+++++|+++++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEec
Confidence 89999 89999999999999999999999999998 9999999999999998 889999999999999887764
No 62
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.03 E-value=3.4e-10 Score=97.52 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=62.1
Q ss_pred cceeeeeecceeee-eeccCCChHHHHHHHHHHhc-----CCCCCCCcEEEEECCEEcCCCCcccccC------CCCCCE
Q 012653 110 QAITVTTVCGKVFE-FHVERGRNVGYVKQQIAKKG-----REFVDLKNQELICDGEELEDQRLITDIC------KRNEAV 177 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~-ieV~~~~TV~~LK~kI~~~~-----gip~~~~~Q~Li~~Gk~LeD~~tL~dy~------I~~~sv 177 (459)
+.|.+|..+|..+. +.+.+++||++||++|++.. ++|.++++|+|+|.|+.|+|++||++|+ +....|
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 33445555564443 77889999999999999554 4555689999999999999999999999 778899
Q ss_pred EEEEEeeCC
Q 012653 178 IHLLVRKSA 186 (459)
Q Consensus 178 I~L~vrks~ 186 (459)
+||++|.+.
T Consensus 85 mHvvlr~~~ 93 (113)
T cd01814 85 MHVVVQPPL 93 (113)
T ss_pred EEEEecCCC
Confidence 999998554
No 63
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.02 E-value=5.3e-10 Score=90.53 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=58.2
Q ss_pred eecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCC-CCCEEEEEE
Q 012653 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKR-NEAVIHLLV 182 (459)
Q Consensus 116 t~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~Le-D~~tL~dy~I~-~~svI~L~v 182 (459)
...|.++.++|++++||++||++|+.++|+| +++|+| |+|+.|. |.++|++|+++ +|++++|.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3568889999999999999999999999999 999999 9999985 77999999998 889999864
No 64
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.96 E-value=1e-09 Score=92.19 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=59.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
..+++|++++||.+||.+|++++++++.+|+|.|+|+.|.+|.++|++|||..+++|+|.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 567889999999999999999999999999999999999989999999999999999998753
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.90 E-value=4.1e-09 Score=82.00 Aligned_cols=67 Identities=31% Similarity=0.469 Sum_probs=62.7
Q ss_pred eeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 114 Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
|+..+|+.+.++++++.||++||++|++..+++ ++.|+|.|+|+.|+|..+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 566789999999999999999999999999988 9999999999999999999999999999999864
No 66
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=98.84 E-value=6.9e-12 Score=121.48 Aligned_cols=129 Identities=29% Similarity=0.306 Sum_probs=66.7
Q ss_pred ccCCCchhhheeeeeeccCCCCccc--ccccccCCCCCCceEEEEeccccccCCCCC------CCCCCCcceeeEeeeec
Q 012653 326 TRAGEGALREVAAYILDHPRDATYS--LHDEERGFAGVPPTVMVRCLHKGFNHPNGY------KHDLENVKIGSLQMFVE 397 (459)
Q Consensus 326 ~~~g~~~~rEvaAylld~~~~~~~~--~~~~~~g~~~VP~T~~v~~~~~~f~~~~~~------~~~~~~~k~GSlQ~fv~ 397 (459)
++.++++.+++++|.+....+..+. .-+....+..|+.|...+..++.+++.... .......+.++.|.|++
T Consensus 28 ~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 107 (235)
T PF00454_consen 28 ILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFLK 107 (235)
T ss_dssp HHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHHH
T ss_pred HHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHHh
Confidence 4456778888999999953111000 000122333444444444444444433211 11244678899999999
Q ss_pred CcCCcccCC-CCCCChhhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcCC
Q 012653 398 NVGSCEEMG-PRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (459)
Q Consensus 398 ~~~~~~~~~-~~~f~~~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~P 457 (459)
...++++++ ....-..++++++|+||++.|.|||.+|||+... +|+ +++||||+||+
T Consensus 108 ~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~-~g~--~~hIDfg~~f~ 165 (235)
T PF00454_consen 108 SFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK-TGE--LIHIDFGFIFG 165 (235)
T ss_dssp HSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET-TSE--EEE--HSSCTT
T ss_pred cCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc-cce--eeeEEeHHhhh
Confidence 988886665 3333467899999999999999999999999542 254 99999999998
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.83 E-value=4.1e-09 Score=110.39 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=69.5
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 32 ~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
..++|+|+..+..+.+.|..+.||.+||++|...+++++++|+|+|.||+|. |+.+|..|||++|.|||||++..
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence 5689999555559999999999999999999999999999999999999998 99999999999999999999864
No 68
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.83 E-value=1e-08 Score=81.50 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=65.1
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCC-CcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL-KNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~-~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
|+|+|++.+|+.+.+.|.+++++..|+++++++.+++ . +..+|+|+|++|+++.|+.+|+++++++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 5789999999999999999999999999999999998 7 999999999999999999999999999999863
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.82 E-value=5.4e-09 Score=109.48 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=69.4
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.++|+|||.++ ++.+.|..+.||.++|+.|+..++++ +++++|+|.||.|+|+.||..|+|++|.+|||+++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC--hhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47899999888 78999999999999999999999988 9999999999999999999999999999999987644
No 70
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.81 E-value=8.3e-09 Score=86.76 Aligned_cols=61 Identities=23% Similarity=0.128 Sum_probs=56.8
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCCCCCEEEEEEe
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~Le-D~~tL~dy~I~~~svI~L~vr 183 (459)
...++|++++||.+||.+|+..++++ |++|+|+|+|+.|. |.+||++|++..+|+|.|.+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCC--cccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 56788999999999999999999998 99999999999995 589999999999999999875
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.81 E-value=8.7e-09 Score=103.12 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=71.2
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
|.|+|||+.+.+|++++.+++||..+|++|+...|-..|.++|+|+|+|+.|.|..++.+|++..+..|.+++.|+.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 78999999999999999999999999999999999334499999999999999999999999999999998888664
No 72
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.80 E-value=5.3e-09 Score=90.16 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCEEEEEEe-CC-eEEEEEeCCCCCHHHHHHHHHHHh-----CCC--CcceEEEEcCeecccCCccccccC------ccc
Q 012653 32 DSILIFLSV-GG-SVIPMRVMESDSIASVKLRIQSYN-----GFF--VKKQKLVFEGRELARSNSRVRDYG------LAD 96 (459)
Q Consensus 32 ~sM~I~Vtl-~G-~~~~l~V~~~dTV~~LK~kIq~~~-----Gip--~~~QrLvf~Gk~L~~D~~tL~dyg------I~~ 96 (459)
+.+.|...+ +| ..=+..+.+++||++||++|++.. ++| +++|+|+|.|+.|. |+.+|++|+ +..
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGG 81 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCC
Confidence 445555533 45 345778889999999999999554 455 99999999999998 999999999 777
Q ss_pred ccceeeeeecc
Q 012653 97 GNVLHLVLRLS 107 (459)
Q Consensus 97 gstl~LvlrLs 107 (459)
..|+|++++..
T Consensus 82 ~~TmHvvlr~~ 92 (113)
T cd01814 82 VITMHVVVQPP 92 (113)
T ss_pred ceEEEEEecCC
Confidence 89999999875
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.79 E-value=2.7e-08 Score=82.24 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=60.0
Q ss_pred EEEEEEeC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE-EcCe-----ecccCCccccccCcccccceeee
Q 012653 34 ILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEGR-----ELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 34 M~I~Vtl~--G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv-f~Gk-----~L~~D~~tL~dygI~~gstl~Lv 103 (459)
+.|+|+.+ ....+.++.++.||.+||.+++..+|+++..|+|. |.|+ .|.+|+.+|++||+++|.+||++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45666443 45566679999999999999999999999999995 7887 68778999999999999999976
No 74
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.78 E-value=1.5e-08 Score=78.74 Aligned_cols=64 Identities=33% Similarity=0.658 Sum_probs=59.7
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 40 l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+|+.+.+++.++.||.+||.+|++..|+++..|+|+|+|+.|. |+.+|.+|++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 5 LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence 46889999999999999999999999999999999999999997 89999999999999988753
No 75
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.77 E-value=2.2e-08 Score=79.58 Aligned_cols=70 Identities=23% Similarity=0.470 Sum_probs=63.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-cceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~-~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
|+|+| ..+|+.+.+.|.+++++..|+.+.+++.|++. +..+|+|.|+.|. ++.|+++|+++++++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence 78999 77889999999999999999999999999999 9999999999997 88999999999999999864
No 76
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.74 E-value=1.2e-08 Score=102.04 Aligned_cols=73 Identities=19% Similarity=0.439 Sum_probs=68.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhC--CCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
|+|+| ++.++++++++.|++||.++|++|+...| +|..+|+|+|+|+.|. |+.++.+|+|.++..+.+.+.-+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEecC
Confidence 78999 99999999999999999999999999999 9999999999999998 99999999999999877766433
No 77
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.70 E-value=9.5e-08 Score=73.90 Aligned_cols=72 Identities=29% Similarity=0.400 Sum_probs=67.3
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
+++++..|+.+.+++.++++|..+|.+|+...+++ ..+|++.+.|+.|+|+.++.+|+|..++.++|..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 57788899999999999999999999999999988 8999999999999999999999999999999987643
No 78
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.70 E-value=6.6e-08 Score=74.80 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=66.7
Q ss_pred EEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 36 I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
+++ ++.|+++.+++.+.++|..+|.+|+...|++...|++.+.|+.|+ |+.++.+|+|..++++++..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEecC
Confidence 456 788999999999999999999999999999999999999999998 88999999999999999988765
No 79
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.44 E-value=9.2e-07 Score=73.27 Aligned_cols=70 Identities=20% Similarity=0.450 Sum_probs=57.4
Q ss_pred EEEEEEeCC---eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc----C---eecccCCccccccCcccccceeee
Q 012653 34 ILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----G---RELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 34 M~I~Vtl~G---~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~----G---k~L~~D~~tL~dygI~~gstl~Lv 103 (459)
+.|+|+-+. .....++.++.||.+||.+|+..+|+++..|+|.+. + ..|.+|..+|.+||+++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567775433 489999999999999999999999999999999976 1 236668899999999999999864
No 80
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.41 E-value=6.5e-07 Score=77.18 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCc-------ccccceeeeeec
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-------ADGNVLHLVLRL 106 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-------~~gstl~LvlrL 106 (459)
|-|.|.....++.+++.++.||.+||++|+.....|++.|+|+-.+..|+ |+.+|+|||+ +..++|-|.+|-
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLD-DGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeec-ccccHHHcCccccccccCCCCeEEEEEec
Confidence 34445667789999999999999999999999999999999996667786 9999999999 668888888875
Q ss_pred ccc
Q 012653 107 SDL 109 (459)
Q Consensus 107 sd~ 109 (459)
.++
T Consensus 82 ~d~ 84 (119)
T cd01788 82 SDD 84 (119)
T ss_pred CCC
Confidence 443
No 81
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.39 E-value=1.4e-06 Score=71.97 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=54.8
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE-ECCE-----Ec-CCCCcccccCCCCCCEEEEEEe
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGE-----EL-EDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li-~~Gk-----~L-eD~~tL~dy~I~~~svI~L~vr 183 (459)
.......+.++.||.+||++++..+|++ +..|+|. |.|+ +| +|.++|++|++++|..||++-.
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 4455566999999999999999999998 9999995 7887 46 7889999999999999999754
No 82
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1e-06 Score=90.52 Aligned_cols=166 Identities=24% Similarity=0.279 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCCCc-cccCCCCcEE---EEEecCCCeEEEEEecCC----CCCCCcCCCCCCCCCCCCCcccCCccC
Q 012653 257 RLISSTVDGLERGNEPI-PSSEGSGGAY---FMQDSSGQKYISVFKPMD----EEPMSVNNPRGLPISVDGEGLKKGTRA 328 (459)
Q Consensus 257 ~~~~~~~~~~~~g~~p~-~~~~gs~g~y---~~~~~~g~~~~~vfKP~d----eEp~~~~nP~~~~~~~~~~~~~~~~~~ 328 (459)
.++..+..++.. .|| .+..+-+|+- .++-+.++ -|||||+. ||-. ++ .| .||-|
T Consensus 151 ~~~~alL~~l~~--~pI~~v~v~~~GtqLKlll~~~~~~--KavfKPmR~~Rd~~~~-~~---yf------s~~dR---- 212 (486)
T KOG3829|consen 151 QSMGALLHALRT--EPITRVSVLGRGTQLKLLLRLSHQQ--KVVFKPMRYPRDEVID-GM---YY------SGFDR---- 212 (486)
T ss_pred hhHHHHHHHhhc--CcceEEeecCCceEEEEEEEecCCc--eeeeccccCCccccCC-Cc---cc------ccccc----
Confidence 556666666654 466 4555566653 44555553 69999983 3321 11 11 12222
Q ss_pred CCchhhheeeeeeccCCCCcccccccccCCCCCCceEEEEe--cc-----------ccccCCCCC-------C-------
Q 012653 329 GEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRC--LH-----------KGFNHPNGY-------K------- 381 (459)
Q Consensus 329 g~~~~rEvaAylld~~~~~~~~~~~~~~g~~~VP~T~~v~~--~~-----------~~f~~~~~~-------~------- 381 (459)
---||||+=|| +.|||..+|||+=+-+ +- .+|+.+.+. .
T Consensus 213 ---HnAEiAAFHLD-----------RiL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~ 278 (486)
T KOG3829|consen 213 ---HNAEVAAFHLD-----------RVLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTE 278 (486)
T ss_pred ---cchhhhhhhhh-----------hhhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCc
Confidence 35699999999 5899999999964322 11 245555331 1
Q ss_pred ---CCCCCcceeeEeeeecCcCCcc-----cCCCCCC------C----------------------hhhhhheeeecEEe
Q 012653 382 ---HDLENVKIGSLQMFVENVGSCE-----EMGPRAF------P----------------------VDEVHKISVLDIRL 425 (459)
Q Consensus 382 ---~~~~~~k~GSlQ~fv~~~~~~~-----~~~~~~f------~----------------------~~ev~ki~ilD~~~ 425 (459)
+..+..+.||+|.|+++..... .-|.+.+ + .-++=.||||||+|
T Consensus 279 ~avCg~pdmlEGS~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLi 358 (486)
T KOG3829|consen 279 EAVCGDPDMLEGSLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLI 358 (486)
T ss_pred ccccCCcccccceEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHh
Confidence 1255889999999999854321 1111110 0 11577899999999
Q ss_pred ecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 426 ANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 426 ~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.|+|||-=--. ... ++.-.++-+|||-+|
T Consensus 359 GN~DRHHYEtF-~~f-~d~s~~ihLDngr~F 387 (486)
T KOG3829|consen 359 GNMDRHHYETF-EVF-GDLSFLIHLDNGRAF 387 (486)
T ss_pred cccchhhhhhh-hcc-CCcceEEEecccccc
Confidence 99999953221 111 233568999999988
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.29 E-value=5.5e-06 Score=72.12 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=57.4
Q ss_pred ceeeeeecce-eeeeeccCCChHHHHHHHHHHhcC-----CCCCCCcEEEEECCEEcCCCCcccccCCCCCC------EE
Q 012653 111 AITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGR-----EFVDLKNQELICDGEELEDQRLITDICKRNEA------VI 178 (459)
Q Consensus 111 ~I~Vkt~~Gk-~~~ieV~~~~TV~~LK~kI~~~~g-----ip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~s------vI 178 (459)
.|.++-.+|+ ...+..++++||++||++|...+- .|..+.+.||+|.|+.|+|..+|.++.+..+. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 3444556787 777899999999999999998762 23356899999999999999999999876544 79
Q ss_pred EEEEeeCCccc
Q 012653 179 HLLVRKSAKVR 189 (459)
Q Consensus 179 ~L~vrks~kv~ 189 (459)
||++|.....+
T Consensus 84 Hlvvrp~~~~~ 94 (111)
T PF13881_consen 84 HLVVRPNAPEP 94 (111)
T ss_dssp EEEE-SSSSSS
T ss_pred EEEecCCCCCc
Confidence 99998665433
No 84
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.24 E-value=3.2e-06 Score=72.93 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=61.4
Q ss_pred ceeeeeecce-eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-------CCCCEEEEEE
Q 012653 111 AITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-------RNEAVIHLLV 182 (459)
Q Consensus 111 ~I~Vkt~~Gk-~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I-------~~~svI~L~v 182 (459)
.+|+.....| ++-++++.+.||.+||++|+.....| +++|+|+-.+..|+|.+||+|||+ +..+++-|.+
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAF 79 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCCeEEEEE
Confidence 3455444434 45578999999999999999999988 999999987888999999999999 7799999988
Q ss_pred eeC
Q 012653 183 RKS 185 (459)
Q Consensus 183 rks 185 (459)
|+.
T Consensus 80 r~~ 82 (119)
T cd01788 80 RSS 82 (119)
T ss_pred ecC
Confidence 853
No 85
>PLN02560 enoyl-CoA reductase
Probab=98.19 E-value=3e-06 Score=86.15 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=61.6
Q ss_pred cceeeeeecceee---eeeccCCChHHHHHHHHHHhcCC-CCCCCcEEEEEC-------CEEcCCCCcccccCCCCCCEE
Q 012653 110 QAITVTTVCGKVF---EFHVERGRNVGYVKQQIAKKGRE-FVDLKNQELICD-------GEELEDQRLITDICKRNEAVI 178 (459)
Q Consensus 110 m~I~Vkt~~Gk~~---~ieV~~~~TV~~LK~kI~~~~gi-p~~~~~Q~Li~~-------Gk~LeD~~tL~dy~I~~~svI 178 (459)
|.|+|++.+|+.+ +++++++.||++||++|+++.++ + +++|+|.+. |+.|+|+++|.||+++++++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~--~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYY--PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCC--hhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence 6788888888887 79999999999999999999886 5 899999983 348899999999999999998
Q ss_pred EEE
Q 012653 179 HLL 181 (459)
Q Consensus 179 ~L~ 181 (459)
++-
T Consensus 79 y~k 81 (308)
T PLN02560 79 VFK 81 (308)
T ss_pred EEE
Confidence 873
No 86
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.5e-06 Score=95.93 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=68.4
Q ss_pred ceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 111 ~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.+.|||++.++.+|.|...+||.++|..|+++.+|+ .+.|||+|.|++|.|++++.+|+| +|-+|||+-|.+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccc--cccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 378999999999999999999999999999999999 999999999999999999999999 999999997743
No 87
>PLN02560 enoyl-CoA reductase
Probab=98.15 E-value=3.9e-06 Score=85.31 Aligned_cols=68 Identities=26% Similarity=0.492 Sum_probs=58.5
Q ss_pred EEEEE-EeCCeEE---EEEeCCCCCHHHHHHHHHHHhCC-CCcceEEEEc---Ce----ecccCCccccccCccccccee
Q 012653 34 ILIFL-SVGGSVI---PMRVMESDSIASVKLRIQSYNGF-FVKKQKLVFE---GR----ELARSNSRVRDYGLADGNVLH 101 (459)
Q Consensus 34 M~I~V-tl~G~~~---~l~V~~~dTV~~LK~kIq~~~Gi-p~~~QrLvf~---Gk----~L~~D~~tL~dygI~~gstl~ 101 (459)
|+|+| ..+|+.+ ++++.++.||++||.+|+++.++ ++++|+|.+. |+ .|. |+.+|++||++++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence 67888 6678876 89999999999999999999986 8999999983 43 676 88899999999999865
Q ss_pred e
Q 012653 102 L 102 (459)
Q Consensus 102 L 102 (459)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 3
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3e-06 Score=95.31 Aligned_cols=70 Identities=26% Similarity=0.462 Sum_probs=66.9
Q ss_pred EEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 35 ~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
.+.| |++.++.++.|...+||.++|..|.++..|+.++|||+|.|+.|. |++++++|+| +|.+|||+-|.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccC
Confidence 3778 899999999999999999999999999999999999999999998 9999999999 99999999885
No 89
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.05 E-value=1.2e-05 Score=66.64 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=55.1
Q ss_pred eeeeeecc--eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEEC----C---EEc-CCCCcccccCCCCCCEEEEE
Q 012653 112 ITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD----G---EEL-EDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 112 I~Vkt~~G--k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~----G---k~L-eD~~tL~dy~I~~~svI~L~ 181 (459)
|+|..... +.....+..+.||++||++|+...|++ ++.|+|.+. + ..| +|.++|.+|++++|.+||+.
T Consensus 4 l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 4 LFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 44444333 477789999999999999999999999 999999985 1 234 67999999999999999986
Q ss_pred Ee
Q 012653 182 VR 183 (459)
Q Consensus 182 vr 183 (459)
-.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 54
No 90
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.91 E-value=6.4e-05 Score=65.48 Aligned_cols=74 Identities=30% Similarity=0.417 Sum_probs=54.9
Q ss_pred CEEEEE-EeCCe-EEEEEeCCCCCHHHHHHHHHHHh-------CCCCcceEEEEcCeecccCCccccccCccccc-----
Q 012653 33 SILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYN-------GFFVKKQKLVFEGRELARSNSRVRDYGLADGN----- 98 (459)
Q Consensus 33 sM~I~V-tl~G~-~~~l~V~~~dTV~~LK~kIq~~~-------Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs----- 98 (459)
.+.|.. ..+|. +.++..++++||++||++|-... -..+...||+|.|+.|+ |+.+|+++.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCC
Confidence 456666 55888 89999999999999999999753 12356779999999998 99999999887654
Q ss_pred -ceeeeeecc
Q 012653 99 -VLHLVLRLS 107 (459)
Q Consensus 99 -tl~LvlrLs 107 (459)
++||+++..
T Consensus 81 ~vmHlvvrp~ 90 (111)
T PF13881_consen 81 TVMHLVVRPN 90 (111)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 688888754
No 91
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.87 E-value=6.8e-05 Score=54.60 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=58.1
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
.++....+.+.+..|+++||++|+.+.+.+ ++.+.|+++|..+++...+.+|++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 367788899999999999999999999976 8999999999999999988899999999999853
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.81 E-value=4e-05 Score=62.87 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=44.9
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc---Ceec-ccCCccccccCcccccceeee
Q 012653 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---GREL-ARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~---Gk~L-~~D~~tL~dygI~~gstl~Lv 103 (459)
.++|.|.|....-+..+++++++|+.+||++|++..+++...|.|+.+ ..+| ..++.+|+++||+.|+.|.|.
T Consensus 2 ~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 2 ASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 467999996566688899999999999999999999999999998753 2345 347899999999999998764
No 93
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.72 E-value=0.00011 Score=58.84 Aligned_cols=70 Identities=26% Similarity=0.313 Sum_probs=58.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc----CeecccCCccccccCcccccceeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----GRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~----Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
++++| ...+....+.|+|..+|..+|.+|....|++- .|+|.|. .++|.++..+|++|||-.+..|-|.-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47888 55667899999999999999999999999975 9999995 24555599999999999887666543
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.71 E-value=0.00013 Score=53.09 Aligned_cols=63 Identities=29% Similarity=0.494 Sum_probs=57.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 41 ~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+....+.+.+..|+.+||.+|.++.|+++..|.|+++|..+. +...+.+|++.+++++++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence 4778889999999999999999999999999999999999998 77777899999999988764
No 95
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.70 E-value=0.0001 Score=59.64 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=46.3
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCCCCcccccCCCCCCEEEE
Q 012653 127 ERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 127 ~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
.++.||.+||+.|++..+.. ++++|+|. +.|+.|.|..+|.+|++.++++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~-~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQL-TVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCC-CcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 47789999999999987642 28999986 7999999999999999999999886
No 96
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.64 E-value=0.0001 Score=59.65 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcceEEE--EcCeecccCCccccccCcccccceee
Q 012653 50 MESDSIASVKLRIQSYNG-FFVKKQKLV--FEGRELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 50 ~~~dTV~~LK~kIq~~~G-ip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstl~L 102 (459)
.++.||.+||..|++..+ +++++|+|. +.|+.|. |+.+|.+||+.++++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence 478999999999999875 579999986 7899998 888999999999998764
No 97
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.58 E-value=6.7e-05 Score=61.57 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEEC---CEEc--CCCCcccccCCCCCCEEEEE
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---GEEL--EDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~---Gk~L--eD~~tL~dy~I~~~svI~L~ 181 (459)
+.|-|-||+.+|- +.+++++++|+.+||++|++..+++ .+.|.|+.+ ..+| .+.++|++++++.|+.|+|.
T Consensus 3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 4566777877764 6889999999999999999999988 778888642 2345 57899999999999999873
No 98
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.32 E-value=0.00077 Score=54.14 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=59.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE---CC--EEcCCCCcccccCCCCCCEEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DG--EELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~---~G--k~LeD~~tL~dy~I~~~svI~L~v 182 (459)
++|+|+...+....+.|++..+|..+|++|....+.+ ..|+|.| +| ..|.++.+|++|||=.+..|.|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 4688888888899999999999999999999999976 5999999 33 347899999999987777776653
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00038 Score=69.83 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=58.3
Q ss_pred eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
..++++|+.+.+|.+||+.+++..|+| +++.+++|.|++|.|..++..+.+...+++|+++-+++
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~ 78 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPW 78 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCC--hhheEEEEeccccccCceeecccccccchhhhhccCcc
Confidence 457789999999999999999999999 99999999999999999999888888899998854443
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00058 Score=68.51 Aligned_cols=69 Identities=19% Similarity=0.437 Sum_probs=60.5
Q ss_pred EEEEEEeCC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeee
Q 012653 34 ILIFLSVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 34 M~I~Vtl~G----~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
|.++|.+++ ..++++|+.+.+|.+||+-++.+.|+|+++.+++|.||+|+ |+.+++.+.+...+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhh
Confidence 556664432 45888999999999999999999999999999999999998 8999999999888888876
No 101
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.84 E-value=0.0024 Score=53.66 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=52.4
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE-cCeecccCCccccccCcc
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-EGRELARSNSRVRDYGLA 95 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf-~Gk~L~~D~~tL~dygI~ 95 (459)
|-|.|.....++.++..++.||-+||.+++....-|++.|+|+. ...+|.+|..+|+|+|..
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 44556677789999999999999999999999999999999997 443554599999999753
No 102
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00068 Score=52.89 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=58.4
Q ss_pred EEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeee
Q 012653 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 35 ~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
++.+ ..-|+...+.+.++|||.++|..|+.++|..+++..|--.+..+. |.-+|++|.|.+|..+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~k-d~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhh-cccceeeEEeccCccEEEe
Confidence 3444 455789999999999999999999999999999888876677776 9999999999999877764
No 103
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.001 Score=51.92 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=57.7
Q ss_pred ceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012653 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 111 ~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
.+.++..-|+...+.+.+.+||+++|+.|+.+.|.. ++...|---+..++|+-+|+||.+.++-.+.|
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCC--hhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 345555669999999999999999999999999977 77777776667789999999999998877765
No 104
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=96.31 E-value=0.00098 Score=54.15 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=28.9
Q ss_pred hhhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEee
Q 012653 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (459)
Q Consensus 412 ~~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~I 450 (459)
+.|+-++.+|+++|.|+|||..||=+-.+ ++.++|.|+
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-~~~~~LaP~ 77 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEE-CCEEEE--B
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-CCeEEecCC
Confidence 56888999999999999999999988776 577899886
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.00 E-value=0.011 Score=49.78 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=44.0
Q ss_pred eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE-CC-EEcCCCCcccccCC
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-DG-EELEDQRLITDICK 172 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~-~G-k~LeD~~tL~dy~I 172 (459)
.++.++.+++.||.+||++++....-| ++.|+|+. .. +.|+|.++|+|+|.
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCC--CcchheeecCHHHHhhccchhhhccc
Confidence 356688999999999999999999878 99999997 44 56899999999963
No 106
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=95.95 E-value=0.0043 Score=60.02 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=32.4
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
++=-++|||++|.|+|||.-|.. .+..++ .-++-+|||-.|
T Consensus 91 dliDm~IFDFLigN~DRhhye~f-~~fgn~-~~l~~LDNgrgF 131 (221)
T PF06702_consen 91 DLIDMAIFDFLIGNMDRHHYETF-NKFGNE-GFLLHLDNGRGF 131 (221)
T ss_pred HHHHHHHHHHHhcCCcchhhhhh-hccCCC-ceEEEEeCCccc
Confidence 56789999999999999999865 333323 348999999877
No 107
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.014 Score=61.73 Aligned_cols=69 Identities=13% Similarity=0.254 Sum_probs=62.5
Q ss_pred EEEEeCCeEEEEE-eCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 36 IFLSVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 36 I~Vtl~G~~~~l~-V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|.|+-.|+.+.++ ++.++|+..+|.++...+|++|++|++...|..+. |+..+....|+++.++++.-.
T Consensus 6 v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 6 VIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred EeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeecc
Confidence 5557788999998 99999999999999999999999999999999998 777888899999999998654
No 108
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.035 Score=58.84 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=62.6
Q ss_pred eeeeeecceeeeee-ccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 112 ITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 112 I~Vkt~~Gk~~~ie-V~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
|.|+ ..|+.+.++ ++.++|+..+|+++....|++ |+.|++.+.|..+.|+-.+....|+++.+|+|+-...
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCC--ccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 4454 578889987 999999999999999999998 9999999999999999888888999999999975433
No 109
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.20 E-value=0.062 Score=42.46 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=46.0
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceee
Q 012653 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 39 tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~L 102 (459)
..+++...+.|.|+.++.++-++..+++|+.+++-.|.++++.|+ -..+++-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld-lslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD-LSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES-SS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec-cccceeecCCCCCCEEeC
Confidence 457889999999999999999999999999999999999999997 889999999999988764
No 110
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.16 Score=43.19 Aligned_cols=78 Identities=14% Similarity=0.316 Sum_probs=67.4
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...+.+.| -..+.+..+.|.-+.....|+..-++..|++....|+.|+|+.+. ...|-.+.+.++++.|.++....++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEeecccC
Confidence 35566666 456788999999999999999999999999999999999999997 8899999999999999887655443
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.77 E-value=0.098 Score=48.48 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=56.1
Q ss_pred EEEEE-EeCC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCcce-EEEEc-Ceecc-cCCccccccCcccc----ccee
Q 012653 34 ILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ-KLVFE-GRELA-RSNSRVRDYGLADG----NVLH 101 (459)
Q Consensus 34 M~I~V-tl~G----~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~Q-rLvf~-Gk~L~-~D~~tL~dygI~~g----stl~ 101 (459)
|+|+| +++| .++.+.+.++.||.+|+.+|....+++...| .|++. ++.|. .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 68999 8888 6899999999999999999999999998885 45553 55553 25555665544333 3566
Q ss_pred eeeecccc
Q 012653 102 LVLRLSDL 109 (459)
Q Consensus 102 LvlrLsd~ 109 (459)
|.+++.|+
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 77777654
No 112
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.22 Score=42.35 Aligned_cols=74 Identities=12% Similarity=0.244 Sum_probs=64.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
+.+.|+-.++.+..+.|.++.....|...-+++.|+. -+..|..|+|+.+.+.+|=++...+++++|.++....
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQT 94 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecc
Confidence 4445555567788899999999999999999999988 8999999999999999999999999999999876543
No 113
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.62 E-value=0.12 Score=40.84 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=46.2
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
.+++.+++.|.++.++.++-+...+++++. +++-.|.|+++.|+-...+.-.++.+++.+.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCC--ccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 568899999999999999999999999988 78999999999999999999889999998875
No 114
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=94.45 E-value=0.08 Score=45.06 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=38.9
Q ss_pred eeeeecc--CCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccc
Q 012653 121 VFEFHVE--RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169 (459)
Q Consensus 121 ~~~ieV~--~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~d 169 (459)
.+.++|. .+.||..||+.|.+...-...-..++|+|+|+.|.|...|..
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~ 63 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSS 63 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhh
Confidence 3566666 788999999999999842223568899999999998877765
No 115
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.38 E-value=0.078 Score=43.01 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=49.2
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCC-CCC---cEEEE-ECCEEcCCCCcccccCCCCCCEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DLK---NQELI-CDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~-~~~---~Q~Li-~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
.+|+|...+|+.+-+.+....+|+.+...|.+..+.+. +.. .-+|. -+|..|+++.+|++++|.+|++|.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 34566654568888999999999999999999888531 122 23555 5899999999999999999999987
No 116
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.062 Score=51.48 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=57.8
Q ss_pred EEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccccccee
Q 012653 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101 (459)
Q Consensus 36 I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~ 101 (459)
..++.+++.+.+.+...+|+.++|.+++...|+.+..|+++|+|..|- |...|..++|+.+....
T Consensus 150 ~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYv 214 (231)
T KOG0013|consen 150 LRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYV 214 (231)
T ss_pred HHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEE
Confidence 333556788999999999999999999999999999999999999998 89999999999995433
No 117
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=93.95 E-value=0.14 Score=41.51 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=47.6
Q ss_pred EEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCcc------eEEE-EcCeecccCCccccccCcccccceee
Q 012653 34 ILIFLSVG-GSVIPMRVMESDSIASVKLRIQSYNGFFVKK------QKLV-FEGRELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 34 M~I~Vtl~-G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~------QrLv-f~Gk~L~~D~~tL~dygI~~gstl~L 102 (459)
++|+|... ++.+.+.+..+.+|++|...|-+..+.+... -.|. -.|..|. ++.+|.++||.+|+++.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence 46666444 5899999999999999999999988764332 2444 5688997 899999999999999876
No 118
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.13 Score=49.18 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=55.8
Q ss_pred EEEEEEeCCeE--EEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE-EcC-----eecccCCccccccCcccccceeeee
Q 012653 34 ILIFLSVGGSV--IPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEG-----RELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 34 M~I~Vtl~G~~--~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv-f~G-----k~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
++++|+.+-.. ..-+..++.||+++|.|++...|.+++.+.|. |.| ..|.+++..|..|+..+|-.||++=
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 45666333223 44466789999999999999999999999987 443 4588788999999999999888754
No 119
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=93.60 E-value=0.036 Score=56.16 Aligned_cols=39 Identities=41% Similarity=0.672 Sum_probs=33.2
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|
T Consensus 130 SlA~ySvv~YiLgigDRH~~NILid~~--G~--liHIDFG~il 168 (289)
T cd00893 130 SMAGYSLLCYLLQIKDRHNGNILLDSD--GH--IIHIDFGFIL 168 (289)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhh
Confidence 455667788889999999999999864 66 9999999998
No 120
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=93.52 E-value=0.16 Score=43.23 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=38.1
Q ss_pred EEEEEeC--CCCCHHHHHHHHHHHh--CCCCcceEEEEcCeecccCCcccccc
Q 012653 44 VIPMRVM--ESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDY 92 (459)
Q Consensus 44 ~~~l~V~--~~dTV~~LK~kIq~~~--Gip~~~QrLvf~Gk~L~~D~~tL~dy 92 (459)
-+++++. .+.||..||..|.+.. ...-..+||+|+|+.|. |...|...
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~ 64 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSE 64 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhh
Confidence 3666666 7999999999999998 34556779999999998 77666543
No 121
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.33 E-value=0.45 Score=38.41 Aligned_cols=72 Identities=22% Similarity=0.239 Sum_probs=59.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcc-eEEE--EcCeecccCC-ccccccCcccccceee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLV--FEGRELARSN-SRVRDYGLADGNVLHL 102 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~-QrLv--f~Gk~L~~D~-~tL~dygI~~gstl~L 102 (459)
.+..+|-| ..+|+.+.-...+++||.+|..-|......+... ..|+ |-.+.+..++ .+|++.|+...++|++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 56678888 4578999999999999999999999887776654 5665 5678887555 7999999999998876
No 122
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.2 Score=48.17 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=55.6
Q ss_pred cceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 118 ~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
+++.+.+.+...+||.++|.+++.+.++. +-.|+++|+|..|-|...|..+++++++-..+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccc--hhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 57788899999999999999999999976 889999999999999999999999999544443
No 123
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=92.69 E-value=0.059 Score=56.04 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=33.7
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|
T Consensus 194 S~AgysvvtYiLGigDRHn~NILi~~~--G~--~~HIDFG~il 232 (354)
T cd05177 194 SCAGWCVVTFILGVCDRHNDNIMLTHS--GH--MFHIDFGKFL 232 (354)
T ss_pred HHHHHHHHHHHhcccCcCCCceeEcCC--CC--EEEEehHHhc
Confidence 455677888999999999999999764 66 9999999998
No 124
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=92.55 E-value=0.064 Score=54.43 Aligned_cols=39 Identities=38% Similarity=0.682 Sum_probs=33.6
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+|.=|++.=.|||.+|||+..+ |+ ++.||=|++|
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~~--G~--liHIDFG~~f 170 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDND--GH--IIHIDFGFML 170 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcCC--CC--EEEEehHHhh
Confidence 455677888899999999999999874 66 9999999998
No 125
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=92.49 E-value=0.061 Score=56.20 Aligned_cols=39 Identities=38% Similarity=0.498 Sum_probs=33.4
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|
T Consensus 203 S~AgysvvtYiLGigDRH~~NILi~~~--G~--l~HIDFG~il 241 (366)
T cd05165 203 SCAGYCVATFVLGIGDRHNDNIMVKET--GQ--LFHIDFGHIL 241 (366)
T ss_pred HHHHHHHHHHHhhccccCCcceEEcCC--CC--EEEEehHHhh
Confidence 455677888899999999999999864 66 9999999988
No 126
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=92.48 E-value=0.064 Score=55.87 Aligned_cols=39 Identities=36% Similarity=0.497 Sum_probs=33.1
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|
T Consensus 199 S~AgysVvtYiLGIGDRHn~NILi~~~--G~--l~HIDFG~il 237 (361)
T cd05174 199 SCAGYCVATYVLGIGDRHSDNIMIRES--GQ--LFHIDFGHFL 237 (361)
T ss_pred HHHHHHHHHHHhcccCcCccceeEcCC--CC--EEEEehHHhh
Confidence 455667788889999999999999764 66 9999999987
No 127
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=92.46 E-value=0.54 Score=37.96 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=55.8
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCc-EEEE--ECCEEcCCC--CcccccCCCCCCEEEE
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELI--CDGEELEDQ--RLITDICKRNEAVIHL 180 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~-Q~Li--~~Gk~LeD~--~tL~dy~I~~~svI~L 180 (459)
...|.||..+|+.+.-....++||.+|.+-|......+ ... -.|+ |-.+.+.+. .+|.|.++.+.++|++
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 35677788888888888889999999999998887655 332 5665 567888554 6999999999999886
No 128
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=92.31 E-value=0.066 Score=55.79 Aligned_cols=39 Identities=41% Similarity=0.534 Sum_probs=33.5
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+---+|.=|++.=.|||.||||+..+ |+ ++.||=|++|
T Consensus 202 S~AgYsV~tYiLGIgDRHndNImi~~~--G~--l~HIDFG~iL 240 (366)
T cd05175 202 SCAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFL 240 (366)
T ss_pred HHHHHHHHHHHhcccccCccceeEcCC--CC--EEEEehHHhh
Confidence 455667888999999999999999875 66 9999999987
No 129
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=92.21 E-value=0.074 Score=54.42 Aligned_cols=39 Identities=33% Similarity=0.686 Sum_probs=33.0
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.--+|.=|++.=.|||.||||+..+ |+ ++.||=|++|
T Consensus 151 S~Agysv~tYiLgigDRHn~NILid~~--G~--l~HIDFG~il 189 (311)
T cd05167 151 SMAAYSLISYLLQIKDRHNGNIMIDDD--GH--IIHIDFGFIF 189 (311)
T ss_pred HHHHHHHHHHHhhccccCccceEEcCC--CC--EEEEeeHHhh
Confidence 355567778888889999999999975 66 9999999988
No 130
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=91.97 E-value=0.077 Score=55.34 Aligned_cols=39 Identities=41% Similarity=0.529 Sum_probs=33.0
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
...-.+|.=|++.=.|||.||||+..+ |+ ++.||=|++|
T Consensus 199 S~AgYsvvtYILGIGDRHn~NILi~~~--G~--l~HIDFG~il 237 (362)
T cd05173 199 SCAGYCVATYVLGIGDRHSDNIMVRKN--GQ--LFHIDFGHIL 237 (362)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhh
Confidence 455667788889999999999999764 66 9999999998
No 131
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=91.97 E-value=0.085 Score=54.90 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=33.6
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+|.=|++.=.|||.||||+.++ |+ ++.||-|++|
T Consensus 193 S~A~ysvv~YiLgigDRH~~NILl~~~--G~--l~HIDFG~~l 231 (353)
T cd05166 193 SCAGCCVATYVLGICDRHNDNIMLTKS--GH--MFHIDFGKFL 231 (353)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEeeHHhc
Confidence 456677888999999999999999864 66 9999999987
No 132
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=91.57 E-value=0.09 Score=54.66 Aligned_cols=39 Identities=41% Similarity=0.642 Sum_probs=33.8
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+|.=|++.=.|||.||||+..+ |+ ++.||=|++|
T Consensus 193 S~A~ysvv~YiLGigDRH~~NILi~~~--G~--~~HIDFG~il 231 (350)
T cd00896 193 SCAGYCVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYIL 231 (350)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEcCC--CC--EEEEEhHHhh
Confidence 466678888999999999999999854 66 9999999998
No 133
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=91.56 E-value=0.086 Score=54.86 Aligned_cols=39 Identities=36% Similarity=0.489 Sum_probs=33.6
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+|+=|++.=.|||.||||+..+ |+ ++.||-|++|
T Consensus 194 S~A~ysv~~YiLgigDRH~~NILi~~~--G~--~~HIDFG~il 232 (352)
T cd00891 194 SCAGYCVATYVLGIGDRHNDNIMLTKT--GH--LFHIDFGHFL 232 (352)
T ss_pred hHHHHHHHHHHccccccCCCceEECCC--CC--EEEEehHHhh
Confidence 456677888999999999999999864 66 9999999988
No 134
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=91.45 E-value=0.1 Score=54.21 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=33.1
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+---+|.=|++.=.|||.||||+..+ |+ ++.||=|+.|
T Consensus 194 S~AgYsV~tYiLgIgDRHndNImi~~~--Gh--lfHIDFG~iL 232 (354)
T cd00895 194 SCAGCCVATYVLGICDRHNDNIMLKTT--GH--MFHIDFGRFL 232 (354)
T ss_pred HHHHHHHHHHHccccccCCCceeEcCC--CC--EEEEeeHHhc
Confidence 455667888999999999999999875 76 9999999876
No 135
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.14 E-value=0.85 Score=42.35 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=52.2
Q ss_pred cceeeeeecc----eeeeeeccCCChHHHHHHHHHHhcCCCCCCCc-EEEEE-CCEEc--CCCCcccccCCCCC----CE
Q 012653 110 QAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELIC-DGEEL--EDQRLITDICKRNE----AV 177 (459)
Q Consensus 110 m~I~Vkt~~G----k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~-Q~Li~-~Gk~L--eD~~tL~dy~I~~~----sv 177 (459)
|+|+|.+++| .++.+.+..+.||.+|+.+|....+++ ... +.|++ .+..| .+...+..+.-.+. -+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~ 78 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT 78 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence 5789999999 588899999999999999999999977 555 44665 35555 45565666553333 35
Q ss_pred EEEEEe
Q 012653 178 IHLLVR 183 (459)
Q Consensus 178 I~L~vr 183 (459)
++|.++
T Consensus 79 l~l~~r 84 (162)
T PF13019_consen 79 LRLSLR 84 (162)
T ss_pred EEEEEe
Confidence 566555
No 136
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=90.61 E-value=2.1 Score=41.39 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=60.0
Q ss_pred CCCEEEEEEeCC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCc---ceEEE--EcCee---cccCCccccccCccccc
Q 012653 31 NDSILIFLSVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLV--FEGRE---LARSNSRVRDYGLADGN 98 (459)
Q Consensus 31 ~~sM~I~Vtl~G----~~~~l~V~~~dTV~~LK~kIq~~~Gip~~---~QrLv--f~Gk~---L~~D~~tL~dygI~~gs 98 (459)
...|+|+..-.+ +.+.+-|..+.||.+|..+++++.+++.. ..+|+ ++++. +. .+.+|.+. .+..
T Consensus 18 kk~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~ 94 (213)
T PF14533_consen 18 KKQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYI 94 (213)
T ss_dssp B--EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TT
T ss_pred ceEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcc
Confidence 455666663222 46889999999999999999999998765 33443 45544 54 56666654 2222
Q ss_pred ceeeeee------cc----cccceeeee-------ecceeeeeeccCCChHHHHHHHHHHhcCCC
Q 012653 99 VLHLVLR------LS----DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (459)
Q Consensus 99 tl~Lvlr------Ls----d~m~I~Vkt-------~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip 146 (459)
++.+-.- +. +.+.|.|-. ..|-.|.+.|.+.+|..++|+||+++.|++
T Consensus 95 ~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~ 159 (213)
T PF14533_consen 95 TLRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVS 159 (213)
T ss_dssp EEEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred eeeeecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence 2222110 11 123333322 337788899999999999999999999976
No 137
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.30 E-value=1.1 Score=36.17 Aligned_cols=69 Identities=6% Similarity=0.000 Sum_probs=52.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~LeD---~~tL~dy~I~~~svI~L 180 (459)
-+|.||..+|+.+.-....++|+.+|.+-|....+.. .....|+ |--+.+.+ +.+|.+.++...++|.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4577788888888888889999999999996655533 3445554 56677753 57999999888888875
No 138
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.80 E-value=1.3 Score=36.11 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=51.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC-CCCcccccCCCCCCEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE-DQRLITDICKRNEAVIH 179 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~Le-D~~tL~dy~I~~~svI~ 179 (459)
-+|.||..+|+.+.-....++||++|.+-|....+.+ ......|. |=.++|. ++.||.|.++.+.+++.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q 76 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-AARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ 76 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-CCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence 4577888889988888889999999999999875432 12445565 6677774 48899999988655543
No 139
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.54 E-value=1.9 Score=34.38 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=48.8
Q ss_pred eeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE----C--CEEcCCCCcccccCCC
Q 012653 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----D--GEELEDQRLITDICKR 173 (459)
Q Consensus 114 Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~----~--Gk~LeD~~tL~dy~I~ 173 (459)
|+.++|....++|+++.|+.++=++|+...++. ..+.--|.| + ...|+..++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 567889999999999999999999999999987 367788999 2 2457888888888766
No 140
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=89.45 E-value=0.5 Score=46.59 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=48.1
Q ss_pred EEEEE-EeCC-eEEE-EEeCCCCCHHHHHHHHHHH-hCCCCcceEEEE----cCeecccCCccccccCccccccee
Q 012653 34 ILIFL-SVGG-SVIP-MRVMESDSIASVKLRIQSY-NGFFVKKQKLVF----EGRELARSNSRVRDYGLADGNVLH 101 (459)
Q Consensus 34 M~I~V-tl~G-~~~~-l~V~~~dTV~~LK~kIq~~-~Gip~~~QrLvf----~Gk~L~~D~~tL~dygI~~gstl~ 101 (459)
|.|++ +.++ ..+. ...+..+||.+++.++.++ ..+.+..+|+.+ .|++|. |+++|++|+...+.++.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i~ 75 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATIY 75 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEEE
Confidence 56777 4443 2333 6777899999999666655 566665555443 599998 89999999998886554
No 141
>COG5417 Uncharacterized small protein [Function unknown]
Probab=89.33 E-value=2 Score=34.78 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=54.4
Q ss_pred CEEEEEE---eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----cceEEEEcCeecccCCccccccCcccccceee
Q 012653 33 SILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFV-----KKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 33 sM~I~Vt---l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~-----~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~L 102 (459)
.|.|+|. -+|.++-+++....+|..|-..+-+...+.. ...+..-.++.|. ++..|.+|+|.+|+.+.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence 4666772 3689999999999999999888777655432 3446777889998 889999999999997754
No 142
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=88.68 E-value=0.2 Score=52.31 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=32.9
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+---+|.=|++.=.|||.||||+..+ |+ ++.||-|++|
T Consensus 203 S~AgYsV~tYiLGIgDRHndNImi~~~--G~--lfHIDFG~il 241 (365)
T cd00894 203 SCAGYCVATFVLGIGDRHNDNIMITET--GN--LFHIDFGHIL 241 (365)
T ss_pred HhHHHHHHHHhccccCccccceeEcCC--CC--EEEEeeHHhh
Confidence 355566778899999999999999865 66 9999999987
No 143
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=88.64 E-value=0.8 Score=45.21 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=48.9
Q ss_pred cceeeeeecc-eeee-eeccCCChHHHHHHHHHHhc-CCCCCCCcEEEE----ECCEEcCCCCcccccCCCCCCEEEE
Q 012653 110 QAITVTTVCG-KVFE-FHVERGRNVGYVKQQIAKKG-REFVDLKNQELI----CDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 110 m~I~Vkt~~G-k~~~-ieV~~~~TV~~LK~kI~~~~-gip~~~~~Q~Li----~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
|.|++...++ ...+ .......|+.+++++|.++. ++- +..+++. -+|+.|-|+.+|.+||..++++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~--~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKIT--PYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccC--ccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4556554443 2333 66778889999997776654 444 4444444 3899999999999999999988876
No 144
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=88.44 E-value=0.21 Score=51.94 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=33.8
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+---+|.=|++.=.|||.||||+..+ |+ ++.||=|++|
T Consensus 193 S~AgYsv~tYiLGIgDRHn~NILi~~~--Gh--l~HIDFG~il 231 (353)
T cd05176 193 SCAGCCVATYVLGICDRHNDNIMLRST--GH--MFHIDFGKFL 231 (353)
T ss_pred HHHHHHHHhhhccccCcCCcceEEcCC--CC--EEEEeeHHhc
Confidence 456677889999999999999999765 66 9999999987
No 145
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=88.14 E-value=2.5 Score=34.11 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=54.9
Q ss_pred CCEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeecccC--CccccccCcccccceee
Q 012653 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (459)
Q Consensus 32 ~sM~I~Vt-l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstl~L 102 (459)
+.-+|-|. -+|+.+.-....++||.+|..-|....+.......|+ |-.+.+.++ +.+|.+.|+...++|.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 45677774 5789999999999999999999976666665566676 567778643 47899999988877654
No 146
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=1.4 Score=37.03 Aligned_cols=73 Identities=11% Similarity=0.263 Sum_probs=64.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+.+.+.| ...+.++.+.|..+.+...|....++..|-..+..|+.|+|+.+. -+.+-.|++..++..|..+.
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHHH
Confidence 44567777 578899999999999999999999999999999999999999997 88999999999988776543
No 147
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.81 E-value=2.3 Score=34.67 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=52.1
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-CcceEEE--EcCeecccCCccccccCcccccc
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLV--FEGRELARSNSRVRDYGLADGNV 99 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip-~~~QrLv--f~Gk~L~~D~~tL~dygI~~gst 99 (459)
..+|-| .-+|+.+......++||.+|..-|....+-+ .....|. |-.+.|.+++.+|++.|+.+..+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 356777 4478999999999999999999999875422 2445565 67899987889999999986543
No 148
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.71 E-value=3.3 Score=33.56 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=52.3
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~LeD---~~tL~dy~I~~~svI~L 180 (459)
-+|.||..+|+.+.-....++|+.+|.+-|....+. .....|+ |--+.+.+ +.+|.+.++.+.++|.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 356777788888887888899999999999876542 2344555 56777753 58999999999998876
No 149
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=86.25 E-value=3.4 Score=34.68 Aligned_cols=66 Identities=26% Similarity=0.314 Sum_probs=45.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE----cCee-cccCCccccccCcccccceeeeeecccc
Q 012653 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF----EGRE-LARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 43 ~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf----~Gk~-L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
..++...+..|||..++..+++.+.+ ...-||-- ++.+ |.+.+.||+|.+|.+|.+|.+-.|-.|+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 46778889999999999999999999 55667763 2333 5546679999999999988877766554
No 150
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=85.79 E-value=1.6 Score=35.36 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=46.7
Q ss_pred ccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccC-CCCCCEEEEEEe
Q 012653 126 VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC-KRNEAVIHLLVR 183 (459)
Q Consensus 126 V~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~-I~~~svI~L~vr 183 (459)
|.++++|.++++-+....... ......|.++|+.|+|...|.++. ++++++|.|+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~-~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETC-YLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCcccc-ceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 568899999999999886532 156778999999999999998886 788999998643
No 151
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=85.10 E-value=0.59 Score=45.93 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=34.3
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--.+++=|++.=.|||.+|||+.+. +|+ ++.||=|.||
T Consensus 130 SlA~~s~~~YilgigDRh~~NIli~~~-tG~--~~HIDfg~~~ 169 (237)
T cd00892 130 STAVMSMVGYILGLGDRHGENILFDSN-TGD--VVHVDFNCLF 169 (237)
T ss_pred HHHHHHHHHHHhccCCCCcccEEEEcC-CCc--EEEEehHhhh
Confidence 566778889999999999999999983 366 8999999987
No 152
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=84.89 E-value=3.5 Score=33.95 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=38.9
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-cceEEEEcC
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEG 79 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~-~~QrLvf~G 79 (459)
|+|.++.+|..+.+.+.++.+..+|+.+|+++.++.. ....|.|-.
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 4677788999999999999999999999999999864 456677743
No 153
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.05 E-value=0.6 Score=52.36 Aligned_cols=36 Identities=39% Similarity=0.709 Sum_probs=28.3
Q ss_pred heeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 417 KISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 417 ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
--.+.=|++-=-|||.||||+..+ |+ ++.||-|+-|
T Consensus 689 gYSLvcYlLQvKDRHNGNILiD~E--GH--IIHIDFGFmL 724 (847)
T KOG0903|consen 689 GYSLVCYLLQVKDRHNGNILIDEE--GH--IIHIDFGFML 724 (847)
T ss_pred HHHHHHHhhhcccccCCceEecCC--CC--EEEEeeeeEe
Confidence 344556777778999999999775 66 9999999754
No 154
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=84.05 E-value=7.8 Score=38.32 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=81.2
Q ss_pred CCCCEEEEEE-e--CCeEE----EEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC------eecccCCccccccCccc
Q 012653 30 SNDSILIFLS-V--GGSVI----PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG------RELARSNSRVRDYGLAD 96 (459)
Q Consensus 30 ~~~sM~I~Vt-l--~G~~~----~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G------k~L~~D~~tL~dygI~~ 96 (459)
..+.+.||++ . ..+++ .+-|..+++|+++-..|.+..|+|.+...++|.- ..+. ...++....|++
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~-~~~t~~~~el~~ 143 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPID-PNQTFEKAELQD 143 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--T
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcC-CCCchhhcccCC
Confidence 4778999994 2 22222 3468899999999999999999999988888863 3364 789999999999
Q ss_pred ccceeeeeecc--------------------cccceeeee---ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEE
Q 012653 97 GNVLHLVLRLS--------------------DLQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQE 153 (459)
Q Consensus 97 gstl~LvlrLs--------------------d~m~I~Vkt---~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~ 153 (459)
|+.|-.-.... ..+.|.++- ..+..|.+.+....|-.+|-++|++..++. |+..+
T Consensus 144 GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~d--P~~lr 221 (249)
T PF12436_consen 144 GDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVD--PEHLR 221 (249)
T ss_dssp TEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS---GGGEE
T ss_pred CCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC--hHHEE
Confidence 99775544322 124444433 234589999999999999999999999986 88888
Q ss_pred EE
Q 012653 154 LI 155 (459)
Q Consensus 154 Li 155 (459)
|+
T Consensus 222 ~~ 223 (249)
T PF12436_consen 222 FF 223 (249)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 155
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=83.81 E-value=0.73 Score=44.55 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=34.4
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--.+++=|++.=.|||.+|||+... +|+ ++-||=|++|
T Consensus 119 SlA~~s~~~YilglgDRh~~NIli~~~-~G~--~~hIDfg~~~ 158 (219)
T cd00142 119 SLAGYSVAGYILGIGDRHPDNIMIDLD-TGK--LFHIDFGFIF 158 (219)
T ss_pred HHHHHHHHHHHhccCCCCCccEEEECC-CCe--EEEEeeHHhh
Confidence 566788889999999999999999983 365 8999999987
No 156
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=83.75 E-value=1.4 Score=43.31 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=33.9
Q ss_pred eEeeeecCcCCcccCCC---CCCC---hhhhhheeeecEEeecCCC----------CCCcEEEecC
Q 012653 391 SLQMFVENVGSCEEMGP---RAFP---VDEVHKISVLDIRLANTDR----------HAGNILVSKD 440 (459)
Q Consensus 391 SlQ~fv~~~~~~~~~~~---~~f~---~~ev~ki~ilD~~~~N~DR----------~~gNiLv~~~ 440 (459)
-+++||++..-.+.... .... ..++-||-+||+.++|.|| |..|||++..
T Consensus 94 limeYv~G~~l~~~~~~~~s~~~~~~~~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~ 159 (238)
T cd05124 94 LIMEYVPGITLFKMTTHRASEYKGEERLIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDI 159 (238)
T ss_pred eeeeecCCccchhhccccccchhhHHHHHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcc
Confidence 46777777543322221 1111 2468899999999999999 6789999764
No 157
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=83.70 E-value=0.43 Score=53.52 Aligned_cols=40 Identities=28% Similarity=0.544 Sum_probs=33.3
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcCC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~P 457 (459)
..---+|+-|++.=.|||.||||+..+ |+ |+-||-|+.|-
T Consensus 1136 S~AGYsViTYILgIgDRHngNILId~d--Gh--LfHIDFGFILg 1175 (1374)
T PTZ00303 1136 SAKLFLLLNYIFSIGDRHKGNVLIGTN--GA--LLHIDFRFIFS 1175 (1374)
T ss_pred HHHHHHHHHHHhccCcccCCceeEcCC--CC--EEEEecceeec
Confidence 444556788888999999999999887 66 99999999763
No 158
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=83.54 E-value=5.6 Score=31.77 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=48.3
Q ss_pred ceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC---CCCcccccCCCCCCEE
Q 012653 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVI 178 (459)
Q Consensus 111 ~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~Le---D~~tL~dy~I~~~svI 178 (459)
.|.||..+|+.+.-....++||++|.+-|...... .....|+ |-.+.+. ++.+|.+.++.+.+++
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 46777888888888888999999999999876542 3445555 4567774 4889999998854433
No 159
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=83.16 E-value=6.2 Score=32.63 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=53.1
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC--EEcC--------CCCcccccCCCCCCE
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG--EELE--------DQRLITDICKRNEAV 177 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G--k~Le--------D~~tL~dy~I~~~sv 177 (459)
+..+|.||..+|+.+.-....++||+.|.+-|..... . ++...|+.+= +.++ ...||.|.|+.+.++
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~-~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~ 79 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKE-T--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV 79 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCC-C--CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence 3456777778888877777789999999999965433 3 5777887533 6675 377999999998888
Q ss_pred EEE
Q 012653 178 IHL 180 (459)
Q Consensus 178 I~L 180 (459)
|.+
T Consensus 80 L~V 82 (85)
T cd01774 80 LFV 82 (85)
T ss_pred EEE
Confidence 775
No 160
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=82.93 E-value=3.7 Score=34.19 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=44.9
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
.+...++-.+++..||..+..+.++. .+...++..+..|+.+++|-|-|++-..++.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~--L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGIS--LSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S----SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCC--cCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 34556777889999999999999988 89999999999999999999999999999998765
No 161
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=0.49 Score=48.44 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=51.6
Q ss_pred ceeeeeec--ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCC--CCCEEEEE
Q 012653 111 AITVTTVC--GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR--NEAVIHLL 181 (459)
Q Consensus 111 ~I~Vkt~~--Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~--~~svI~L~ 181 (459)
.++||..+ -+.+.|..+...||++||..++...--..-+.+|||+|.|+.|.|...|.|.-++ ...++||+
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 34455544 3556788888999999999999887422126799999999999999999887542 33455553
No 162
>COG5417 Uncharacterized small protein [Function unknown]
Probab=82.76 E-value=6.2 Score=32.07 Aligned_cols=66 Identities=8% Similarity=0.125 Sum_probs=54.3
Q ss_pred eeecceeeeeeccCCChHHHHHHHHHHhcCCCC-CC--CcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012653 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DL--KNQELICDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 115 kt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~-~~--~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
+.-.|.++-+.+....+|..+-.-+.+...+.. +. ++.++.-.++.|.++..|.||+|.+|+.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 445689999999999999999888887776432 12 4567888999999999999999999999876
No 163
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=81.47 E-value=2.3 Score=34.54 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=44.9
Q ss_pred eCCCCCHHHHHHHHHHHhC-CCCcceEEEEcCeecccCCcccccc-Ccccccceeeeeecc
Q 012653 49 VMESDSIASVKLRIQSYNG-FFVKKQKLVFEGRELARSNSRVRDY-GLADGNVLHLVLRLS 107 (459)
Q Consensus 49 V~~~dTV~~LK~kIq~~~G-ip~~~QrLvf~Gk~L~~D~~tL~dy-gI~~gstl~LvlrLs 107 (459)
|.++++|.++++-+..... .......|.++|+.|. +...|++. |++++.++.++.+.-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~-~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLD-DFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccC-CchhhhhhhCCCCCcEEEEEecCC
Confidence 5789999999999887744 4455567889999996 88888877 577788887776543
No 164
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=81.38 E-value=7.6 Score=31.01 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=48.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeeccc--CCccccccCccccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGN 98 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~--D~~tL~dygI~~gs 98 (459)
.+|-| ..+|+.+.-....++||.+|..-|.....- .....|+ |-.+.+.+ .+.+|++.|+.+..
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 35667 447888999999999999999999877543 3445565 55777864 57899999999443
No 165
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=80.63 E-value=0.96 Score=45.38 Aligned_cols=41 Identities=29% Similarity=0.573 Sum_probs=35.3
Q ss_pred hhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
..+--.+++=|++.=.|||.+|||+... +|+ ++.||-|+||
T Consensus 171 ~S~A~~Sv~~YilglgDRH~~NIll~~~-tG~--v~HIDfg~~f 211 (280)
T cd05169 171 RSLAVMSMVGYILGLGDRHPSNIMIDRL-TGK--VIHIDFGDCF 211 (280)
T ss_pred HHHHHHHHHHhheeccCCCcceEEEEcC-CCC--EEEEecHHHH
Confidence 3577788899999999999999999983 366 8999999886
No 166
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=80.53 E-value=0.71 Score=49.54 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=31.7
Q ss_pred hhhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEee
Q 012653 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (459)
Q Consensus 412 ~~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~I 450 (459)
.+++.+..+|.++|.|+|.|+.|+=+-.+.++.++|.|+
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~~~~~~LAPa 365 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSDGRPLALAPV 365 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECCCCCeeecch
Confidence 346778899999999999999998776654467788775
No 167
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.50 E-value=1.5 Score=48.72 Aligned_cols=39 Identities=44% Similarity=0.660 Sum_probs=34.4
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
...--+|.=|+|.=.|||.||+|+++| |+ +..||-||.|
T Consensus 685 ScaGYsVitYILGvGDRhldNLllT~d--Gk--~FHiDFgyIl 723 (843)
T KOG0906|consen 685 SCAGYSVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYIL 723 (843)
T ss_pred hhccceeeeeeecccCCCcCceEEccC--Cc--EEEEeeeeec
Confidence 455667999999999999999999998 65 9999999976
No 168
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=80.08 E-value=0.72 Score=43.99 Aligned_cols=39 Identities=38% Similarity=0.587 Sum_probs=34.2
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--.+++-|++.=.|||.+|||+.++ |+ ++.||=|++|
T Consensus 92 SlA~~s~~~YilglgDRh~~NIli~~~--G~--v~hIDfg~~~ 130 (202)
T smart00146 92 SCAGYSVITYILGLGDRHNDNIMLDKT--GH--LFHIDFGFIL 130 (202)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCC--CC--EEEEechhhh
Confidence 566788999999999999999999843 66 8999999887
No 169
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=79.84 E-value=1.2 Score=43.40 Aligned_cols=40 Identities=33% Similarity=0.556 Sum_probs=34.1
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--.+++=|++.=.|||.+|||+... +|. ++-||=|++|
T Consensus 122 SlA~~s~~~YvlglgDRh~~NIli~~~-tG~--v~hIDf~~~~ 161 (222)
T cd05164 122 STAVMSIVGYILGLGDRHLDNILIDRE-TGE--VVHIDFGCIF 161 (222)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEECC-CCc--EEEEccHHhh
Confidence 566778899999999999999999983 365 8999999887
No 170
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=79.75 E-value=2.4 Score=43.98 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=65.1
Q ss_pred EEEEE--Ee-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccC-CccccccCcccccceeeeeecccc
Q 012653 34 ILIFL--SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS-NSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V--tl-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D-~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|.++| .+ ..+.+++.|...-....++..++...|+..+..-|+|+++++..+ ...+.+||...+.++.+.-+.++.
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 44555 33 447899999999999999999999999999999999999999855 577999999999999888877766
No 171
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=79.42 E-value=1.3 Score=45.30 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=35.4
Q ss_pred hhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
..+--++++=|++.=.|||.+|||+.+. .|. ++.||=|.||
T Consensus 199 ~s~A~~s~~~yilglgDRh~~NIli~~~-tG~--v~hiDf~~~f 239 (307)
T cd05170 199 RSTAVMSMIGYVIGLGDRHLDNVLIDLK-TGE--VVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHHHccCCCCCCccEEEEcC-CCc--EEEEeeHhhh
Confidence 3677888899999999999999999973 465 8999999997
No 172
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=79.35 E-value=4.3 Score=33.77 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=43.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+...++=.+++..||..++.+.++..+.-.++..+..|. ++.+|-+.+++-..++.+.+
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence 4555677788999999999999999999999999998887 89999999999988888654
No 173
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=79.14 E-value=9.5 Score=30.88 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=52.6
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeecccC--CccccccCcccccceee
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstl~L 102 (459)
.-+|.| ..+|+.+.-....++|+.+|..-|+...+-. ....|+ |--+.+.++ +.+|++.|+...++|.|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 456777 4588889999999999999999999765433 445565 567888632 57999999998887765
No 174
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=79.10 E-value=10 Score=31.33 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=53.9
Q ss_pred CCCEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc--Ceecc-------cCCccccccCcccccce
Q 012653 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA-------RSNSRVRDYGLADGNVL 100 (459)
Q Consensus 31 ~~sM~I~Vt-l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~--Gk~L~-------~D~~tL~dygI~~gstl 100 (459)
++..+|-|. .+|+.+.-....++||++|..-|.. .+..+....|+.+ -+.+. +.+.||++-|+....+|
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 456788884 5889999999999999999999965 4445567777743 46775 24679999999977766
Q ss_pred ee
Q 012653 101 HL 102 (459)
Q Consensus 101 ~L 102 (459)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 54
No 175
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=6.2 Score=33.20 Aligned_cols=67 Identities=10% Similarity=0.229 Sum_probs=56.4
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
+.|--.+|.++-+.|..+.+-..|-...++..|-. .+..|+.|+|+.++-++|=.|++.++++.|..
T Consensus 27 Lkvv~qd~telfFkiKktT~f~klm~af~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 27 LKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred eEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC--cceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 33333567788899999999999998888888866 78999999999999999999999988877654
No 176
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=79.07 E-value=1.6 Score=42.95 Aligned_cols=40 Identities=35% Similarity=0.461 Sum_probs=34.6
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+++=|++.=.|||.+|||+.++ .|+ ++.||=|.||
T Consensus 127 S~A~~S~~~YilglgDRH~~NIli~~~-tG~--v~HIDfg~~f 166 (235)
T cd05172 127 SLAAMCVSHWILGIGDRHLSNFLVDLE-TGG--LVGIDFGHAF 166 (235)
T ss_pred HHHHHHHHhheeeccCCCcccEEEECC-CCc--EEEEeeHhhh
Confidence 567788899999999999999999873 365 8999999887
No 177
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=78.17 E-value=8.4 Score=31.76 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=38.4
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCe
Q 012653 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (459)
Q Consensus 35 ~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (459)
-|.|.+++ ++.|+|.+..+..+|..+|.++.+++++..+|.|...
T Consensus 4 vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 45554555 9999999999999999999999999988889998543
No 178
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=75.66 E-value=1.8 Score=47.58 Aligned_cols=36 Identities=33% Similarity=0.621 Sum_probs=30.7
Q ss_pred eecEEeecCCCCCCcEEEecCCCCceEEEeeecCCc
Q 012653 420 VLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYC 455 (459)
Q Consensus 420 ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~ 455 (459)
||.-=...+|=|.|||||+++..+..+++-.|||++
T Consensus 317 If~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~ 352 (538)
T KOG1235|consen 317 IFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLY 352 (538)
T ss_pred HHhcCCccCCCCCCcEEEecCCCCCccEEEEccccc
Confidence 566668899999999999986556778999999986
No 179
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=75.30 E-value=1.7 Score=43.66 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=35.4
Q ss_pred hhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
..+--++++=|++.=.|||.+|||+.+. +|+ ++.||-|.||
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~~-tG~--v~hiDf~~~f 211 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDEK-TAE--VVHIDLGIAF 211 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEcC-cCc--EEEEechhhh
Confidence 4677888899999999999999999873 365 8999999997
No 180
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=75.16 E-value=15 Score=29.31 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.1
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (459)
+.|.+...+.+..+.+.++.|..+|+.+|+++.+.......|.|..
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 4556667889999999999999999999999999877677888864
No 181
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=74.33 E-value=2.7 Score=48.11 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHH
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY 65 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~ 65 (459)
+.+.+-|-. --+|-...++|....|+.++|.++-.+
T Consensus 34 ~~~~i~i~~llP~G~~~~l~v~~e~tls~iK~~l~~~ 70 (1076)
T KOG0904|consen 34 SMGSIPIEFLLPTGFLANLRVSREATLSTIKHQLWKR 70 (1076)
T ss_pred cCCceeEEEEcCCceEEEEeccccccHHHHHHHHHHH
Confidence 355555555 457888889999999999999886554
No 182
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=72.71 E-value=19 Score=29.74 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=55.7
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeeccc--CCccccccCcccccceeee
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~--D~~tL~dygI~~gstl~Lv 103 (459)
.-+|.| ..+|+.+.-....++++.+|-.-|+. .|.+.....|+ |--+.+.. .+.+|++.|+....+|.+-
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 346778 55899999999999999999999998 57788888887 55666642 3579999999988887653
No 183
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=72.24 E-value=20 Score=29.70 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=53.2
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~L---eD~~tL~dy~I~~~svI~L~ 181 (459)
-+|.||..+|+...-....++++..|-.-+... +.+ ++..+|+ |=-+.+ +.+.||.+.|+.+.++|.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 357788889998888888889999999988884 444 6777776 434444 33589999999999998874
No 184
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=71.81 E-value=22 Score=28.98 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeecc--cCCccccccCcccccceeee
Q 012653 32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 32 ~sM~I~Vt-l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstl~Lv 103 (459)
...+|-|. -+|+.+.-....++++.+|-.-|... |.+....+|+ |--+.+. +.+.+|++.|+....+|.+-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 34667774 47899999999999999999999865 7777777887 5677774 24579999999888777653
No 185
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=71.66 E-value=1.4 Score=52.59 Aligned_cols=38 Identities=37% Similarity=0.690 Sum_probs=32.0
Q ss_pred hhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
..--+|+-|++.=-|||.||||+... |+ ++.||-|+-|
T Consensus 1644 ~A~Ysv~s~lLq~KDRHNGNim~Dd~--G~--~iHIDFGf~~ 1681 (1803)
T KOG0902|consen 1644 MAGYSVLSYLLQIKDRHNGNIMIDDQ--GH--IIHIDFGFMF 1681 (1803)
T ss_pred HHHHHHHHHHcccccccCCceeEccC--CC--EEEEeeeeEE
Confidence 44556888999999999999999765 55 9999999876
No 186
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=69.20 E-value=27 Score=27.49 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=43.4
Q ss_pred EEEEeCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 36 IFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 36 I~Vtl~G~--~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
+.|+++|+ ...+++....||.+|-..+ +++...-.+..+|..+. . ++-+++|+.+.+..-.+|
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-~-----~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-E-----DDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-C-----CcCcCCCCEEEEEccccC
Confidence 44455555 5677888889999988765 66666556668888886 3 455667888877654443
No 187
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=67.92 E-value=15 Score=35.54 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=51.9
Q ss_pred eeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE-ECC-----EEcC-CCCcccccCCCCCCEEEEEEeeCCcc
Q 012653 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDG-----EELE-DQRLITDICKRNEAVIHLLVRKSAKV 188 (459)
Q Consensus 122 ~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li-~~G-----k~Le-D~~tL~dy~I~~~svI~L~vrks~kv 188 (459)
+..+..++.||+++|.|+....|.+ ++.++|. |+| -.|. ++..|..|...++-.||++-.....+
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~ 86 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSI 86 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccc
Confidence 3455678899999999999999988 8888876 544 3454 57889999999999999986655544
No 188
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=67.29 E-value=36 Score=26.84 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=42.7
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcc-eEEEE----cC-ee-cccCCccccccCcc
Q 012653 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVF----EG-RE-LARSNSRVRDYGLA 95 (459)
Q Consensus 39 tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~-QrLvf----~G-k~-L~~D~~tL~dygI~ 95 (459)
.++|...+++|+++.|+.++=.+|.++.|+.... .-|.+ .| .. |. .+.+|.++...
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~-~~k~l~~q~~~ 65 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLD-LDKKLKKQLKK 65 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE--SSSBGGGSTBT
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceecc-CcccHHHHcCC
Confidence 4688899999999999999999999999986433 35777 12 11 44 67788888766
No 189
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=66.55 E-value=5.2 Score=47.36 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=27.7
Q ss_pred heeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCC
Q 012653 417 KISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGY 454 (459)
Q Consensus 417 ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~ 454 (459)
--+|--|.+.=+|||.+|||.++. |+ +..||-|-
T Consensus 1190 G~cVaTYVLGIcDRHNDNIMl~~s--GH--mFHIDFGK 1223 (1639)
T KOG0905|consen 1190 GWCVATYVLGICDRHNDNIMLTKS--GH--MFHIDFGK 1223 (1639)
T ss_pred cceeeeEeeecccccCCceEEecc--Cc--EEEEehhh
Confidence 346788889999999999999886 55 88899874
No 190
>PF15051 FAM198: FAM198 protein
Probab=65.19 E-value=2.9 Score=42.53 Aligned_cols=119 Identities=24% Similarity=0.229 Sum_probs=68.7
Q ss_pred CcccCCccCCCchhhheeeeeeccCCCCcccccccccCCCCCCceEEEEecccccc--CCCCC-----------------
Q 012653 320 EGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFN--HPNGY----------------- 380 (459)
Q Consensus 320 ~~~~~~~~~g~~~~rEvaAylld~~~~~~~~~~~~~~g~~~VP~T~~v~~~~~~f~--~~~~~----------------- 380 (459)
||+-+..+ -+.||.||=|| +.||++.-=|++-++...+..- |.+|.
T Consensus 67 CGLiKrp~----D~~EVfAFHLD-----------RVLGLNRTLPaVsRkf~~~~l~yr~~dg~~rPvi~Wdp~i~~~~~~ 131 (326)
T PF15051_consen 67 CGLIKRPL----DMSEVFAFHLD-----------RVLGLNRTLPAVSRKFEFQLLPYRYTDGQPRPVIWWDPDIQPDPNN 131 (326)
T ss_pred eeeECCCC----cHHHHHHHHHH-----------HHhcccccchHhHhhhcccccchhhcCCCcceeEEEccccccCCCC
Confidence 66543333 79999999999 4889988888877765443222 22221
Q ss_pred CCCCCCcceeeEeeeecCcCC------cccCCCCCCChhhhhheeeecEEeecCCC---C--------------------
Q 012653 381 KHDLENVKIGSLQMFVENVGS------CEEMGPRAFPVDEVHKISVLDIRLANTDR---H-------------------- 431 (459)
Q Consensus 381 ~~~~~~~k~GSlQ~fv~~~~~------~~~~~~~~f~~~ev~ki~ilD~~~~N~DR---~-------------------- 431 (459)
..++.....|..|.-++.-.- ..+.+.....-.|--|||+||+++-=-|| +
T Consensus 132 dq~s~~L~W~~YQ~lLk~~C~~~g~~Pk~~~~C~~IhH~EW~klALFDFLLQV~dRLDr~CCGF~P~~~d~Cv~~~l~~k 211 (326)
T PF15051_consen 132 DQNSVALTWGQYQQLLKQRCWQNGRVPKPEWPCTGIHHHEWSKLALFDFLLQVHDRLDRYCCGFRPRPEDPCVEEGLHEK 211 (326)
T ss_pred CccceecCHHHHHHHHHHhcCCCCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhhccccCCCCCCCCcChHHhccchhh
Confidence 122334445555544443221 12223333333477899999998743332 2
Q ss_pred --------CCcEEEecCCCCceEEEeeecCCc
Q 012653 432 --------AGNILVSKDEGGQIKLVPIDHGYC 455 (459)
Q Consensus 432 --------~gNiLv~~~~~~~~~l~~IDhg~~ 455 (459)
..|||+++. ..-+|+-|||-=.
T Consensus 212 C~n~~~l~L~HIl~R~~--dp~hLVfidN~G~ 241 (326)
T PF15051_consen 212 CRNPDELMLVHILVRKS--DPSHLVFIDNAGF 241 (326)
T ss_pred cCCccceeeeEEEeccC--CCceEEEEcCCCC
Confidence 346666664 3457999998543
No 191
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=65.10 E-value=9.6 Score=39.68 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=60.1
Q ss_pred cceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCC--CCcccccCCCCCCEEEEEEeeCCcccCC
Q 012653 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELED--QRLITDICKRNEAVIHLLVRKSAKVRAK 191 (459)
Q Consensus 118 ~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD--~~tL~dy~I~~~svI~L~vrks~kv~~~ 191 (459)
..+.+.+.|...-....++..++...+++ .+..-|+|+.+.+.. .+++..|+...++.+.+.-+.++..+..
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~r~~v 84 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDPRPIV 84 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcc--cchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCCCccc
Confidence 56788899999999999999999999988 788889999999965 5789999999999988765555554433
No 192
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=64.98 E-value=19 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=34.7
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEE
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~ 160 (459)
++.|.|.+.-+...|.++|.++.+++ +++..|.|..+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~--~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELP--AEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC--chhcEEEeccCC
Confidence 88899999999999999999999998 889999997654
No 193
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=63.97 E-value=35 Score=27.12 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=39.5
Q ss_pred CEEEEEEeCCeEEE-EEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC
Q 012653 33 SILIFLSVGGSVIP-MRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (459)
Q Consensus 33 sM~I~Vtl~G~~~~-l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (459)
++.|.+...+.... +.+..+.|..+|+.+|+++.+.+.....|.|..
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 35677777887777 999999999999999999999987777888853
No 194
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=63.88 E-value=28 Score=28.63 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.6
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~ 160 (459)
..|..+.+.+.++.+..+|+++|++++++. +.....|-|-..+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~-~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLD-DMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-CCCeeEEEEECCC
Confidence 567888899999999999999999999965 1256778785544
No 195
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=63.82 E-value=26 Score=27.02 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=36.9
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|+|+|+ |+ .++++...|...||+++.. +.-.++|+|-...+ |+-+++++.|.+.
T Consensus 1 M~I~vN---~k--~~~~~~~~tl~~lr~~~k~--------~~DI~I~NGF~~~~-----d~~L~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKVN---EK--EIETEENTTLFELRKESKP--------DADIVILNGFPTKE-----DIELKEGDEVFLI 54 (57)
T ss_pred CEEEEC---CE--EEEcCCCcCHHHHHHhhCC--------CCCEEEEcCcccCC-----ccccCCCCEEEEE
Confidence 455643 44 4566688899999987653 33367999999885 4445566777664
No 196
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=63.60 E-value=31 Score=26.57 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=42.4
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 37 FLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 37 ~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
.|.++|+.+.+ + ..|+.+|...+ +++.....+..+++.+. ...-.+.-+++|+.+.++.-..|
T Consensus 2 ~i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~--~~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 2 KLFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH--KEARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred EEEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCccccCCCCEEEEEEeccC
Confidence 34567777776 3 35888888754 56655555678888886 34455677888998887654443
No 197
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=63.36 E-value=40 Score=31.10 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=44.9
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC------EEcCCCCcccccC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG------EELEDQRLITDIC 171 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G------k~LeD~~tL~dy~ 171 (459)
+.+.|...+|....+.++.+.||.++-+.++.+.|+. ....-.|++-. ..|+..++|.+..
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~-~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~ 70 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR-ESEYFGLQFEDPDEDLSHWLDPAKTLLDQD 70 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC-ccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence 4566777889999999999999999999999999986 24555566521 2355555555544
No 198
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=63.13 E-value=5.5 Score=39.56 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=34.2
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+--++++=|++.=.|||.+|||+... .|. ++.||-|.||
T Consensus 145 s~A~~s~~gYilglgdRh~~nili~~~-tG~--v~hiDf~~~f 184 (253)
T cd05163 145 QLALLSFMTYILSINNRNPDKIFISRD-TGN--VYQSDLLPSI 184 (253)
T ss_pred HHHHHHHHHHHhcCCCCCchhEEEEcC-CCc--EEEEeeeeee
Confidence 567788899999999999999999984 465 8999999775
No 199
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=62.63 E-value=16 Score=30.42 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=36.0
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCC-CCcEEEEE
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVD-LKNQELIC 156 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~-~~~Q~Li~ 156 (459)
..+++..|+.+.+.+.++..+.+|++.|+++.|+... ...-.|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4567889999999999999999999999999997611 13455666
No 200
>PRK06437 hypothetical protein; Provisional
Probab=62.29 E-value=39 Score=26.47 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=43.6
Q ss_pred EEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 38 LSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 38 Vtl~G-~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
++.+| +...+++....||.+|-.+ .|+++..-.+..+|+.+. .++-+++|+.+.++.-.++
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CceEcCCCCEEEEEecccC
Confidence 44444 5577788888899888765 578877777888999996 3455667888877654443
No 201
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=62.29 E-value=11 Score=41.40 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=49.1
Q ss_pred CCCCEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHH--hCCCCcc------eEEEEc----Ce-ecccCC-------
Q 012653 30 SNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVKK------QKLVFE----GR-ELARSN------- 86 (459)
Q Consensus 30 ~~~sM~I~Vtl---~G~~~~l~V~~~dTV~~LK~kIq~~--~Gip~~~------QrLvf~----Gk-~L~~D~------- 86 (459)
.-.++.++|.. ....+.+.|...|||.++|+||-.. .+.|..+ .-|.+. |+ .|.+.+
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 46778888733 2356899999999999999999877 3544333 234431 23 344221
Q ss_pred -----ccccccCcccccceeeeeecccc
Q 012653 87 -----SRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 87 -----~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.||+.|+|.+|+++-|+.+..+.
T Consensus 266 ~wkrLNTL~HY~V~dga~vaLv~k~~~~ 293 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATVALVPKQHSS 293 (539)
T ss_dssp TEEE--BHHHHT--TTEEEEEEES----
T ss_pred CceEeccHhhcCCCCCceEEEeeccccc
Confidence 25889999999999998876543
No 202
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=62.17 E-value=27 Score=27.48 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=43.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCC----CCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 43 SVIPMRVMESDSIASVKLRIQSYNGF----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 43 ~~~~l~V~~~dTV~~LK~kIq~~~Gi----p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
....+++....||.+|..++....+- ......+..+|+... . ++-+.+++.|.+....+|+
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-~-----~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-L-----DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-C-----CcccCCCCEEEEeCCCCCC
Confidence 34677777789999999999887542 223445667888875 3 4557789999887766553
No 203
>smart00455 RBD Raf-like Ras-binding domain.
Probab=61.18 E-value=19 Score=28.69 Aligned_cols=44 Identities=16% Similarity=-0.009 Sum_probs=38.7
Q ss_pred eeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 012653 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (459)
Q Consensus 113 ~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G 158 (459)
.|-..+|+...+.+.++.|+.++-+++.++.|+. ++...|+..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~--~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLN--PECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEcC
Confidence 3455789999999999999999999999999987 8888888855
No 204
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=61.09 E-value=40 Score=27.49 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=51.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~L---eD~~tL~dy~I~~~svI~L 180 (459)
.+|.||..+|..+.-....++++..|-.-|... +.+ +...+|+ |=-+++ +.+.+|.|.++...++|.+
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 456677778888877788999999999999875 434 5667775 445555 3367999999998888876
No 205
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=60.01 E-value=39 Score=26.57 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=40.3
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCC--CCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gi--p~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
...++++...||.+|.+++...... ........+..+|+... .+.-+++++.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence 3567777789999999999987642 00034556778999887 45567788888875
No 206
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=59.95 E-value=19 Score=28.93 Aligned_cols=45 Identities=20% Similarity=0.052 Sum_probs=38.6
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G 158 (459)
+.|-..+|+...+.|.++.||.++-.++.++.|+. ++...|++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~--~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN--PECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEec
Confidence 34556789999999999999999999999999988 7877777654
No 207
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=59.55 E-value=53 Score=27.47 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=37.8
Q ss_pred CEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC
Q 012653 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (459)
Q Consensus 33 sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (459)
.|+|.|...|.++.+.|.++-+..+|..+|..++++. ...++.|..
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykD 47 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKD 47 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 4677777889999999999999999999999999985 344555543
No 208
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=58.33 E-value=29 Score=27.90 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=37.9
Q ss_pred EEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC
Q 012653 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (459)
Q Consensus 36 I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (459)
+.| .-+|+...+.|.|++||.++-.++.++.|+.+..-.|++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 345 34788899999999999999999999999999988887754
No 209
>PRK06437 hypothetical protein; Provisional
Probab=57.87 E-value=61 Score=25.38 Aligned_cols=54 Identities=11% Similarity=0.026 Sum_probs=40.2
Q ss_pred cceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 118 ~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
.++.-.++++...||.+|-++ .+++ ++...+..+|+.+. .++-+++++.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~--~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLD--EEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCC--CccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 446667788888898887544 4666 77788889999997 555667788888753
No 210
>smart00455 RBD Raf-like Ras-binding domain.
Probab=56.27 E-value=33 Score=27.26 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=36.3
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC
Q 012653 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (459)
Q Consensus 40 l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (459)
-+|+...+.+.|+.||.++-.++.++.|+.++.-.|+..|
T Consensus 7 P~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 7 PDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4678999999999999999999999999999988888755
No 211
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=56.12 E-value=9.2 Score=43.00 Aligned_cols=36 Identities=42% Similarity=0.838 Sum_probs=29.0
Q ss_pred hhhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 412 ~~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
++.||||+... -|=+.+||||..| |+++| -|-|||-
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDrd--GHIKL--TDFGLCT 777 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDRD--GHIKL--TDFGLCT 777 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEccC--Cceee--eeccccc
Confidence 45799998764 5779999999887 88766 4999993
No 212
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=55.70 E-value=38 Score=26.89 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=50.0
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHHh---CCCCcceEEE-EcCeecccCCccccccCcccccceeeeeec
Q 012653 40 VGGSVIPMRVMESDSIASVKLRIQSYN---GFFVKKQKLV-FEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 40 l~G~~~~l~V~~~dTV~~LK~kIq~~~---Gip~~~QrLv-f~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
.+|+...++..++...-.+..+--+.. |-|++.=.|- -+|..|. -++.++|||+.++-++.|.++-
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD-~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLD-VNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEee-ccchhhhccccccceEEEEeec
Confidence 467788888888888888777766664 4555555555 3577886 7899999999999998887753
No 213
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=55.51 E-value=32 Score=39.04 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=40.9
Q ss_pred EEEEE--EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCee
Q 012653 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81 (459)
Q Consensus 34 M~I~V--tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~ 81 (459)
+.|+| ..+...+.+-+.+++|+..++.+|+..+|+|...|.|+|.|..
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 34555 4466789999999999999999999999999999999998654
No 214
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=55.20 E-value=42 Score=26.62 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=48.4
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcC-CCCCCCcEEEE-ECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~g-ip~~~~~Q~Li-~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
.+|+...++...+....-+.++--+..+ .--|++.-.|- -+|..|+-++.+.||++.++-.+.|.++-
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 3577777777777777766666555543 21125655554 37888999999999999999999987763
No 215
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=54.12 E-value=4.2 Score=41.48 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEe--C-C--CCCHHHHHHHHHH----------HhCCCCcceE-----EEEcCeecccC
Q 012653 27 EKLSNDSILIFL-SVGGSVIPMRV--M-E--SDSIASVKLRIQS----------YNGFFVKKQK-----LVFEGRELARS 85 (459)
Q Consensus 27 ~~~~~~sM~I~V-tl~G~~~~l~V--~-~--~dTV~~LK~kIq~----------~~Gip~~~Qr-----Lvf~Gk~L~~D 85 (459)
.|.+..+|.|++ .+....+.|.+ . + +.||.++|..+++ +.++|.++.+ |.|+-+++. |
T Consensus 72 aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~-~ 150 (309)
T PF12754_consen 72 APGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVG-D 150 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCC-C
Confidence 445677788887 44444443322 2 3 6899999999999 8999999999 999999996 7
Q ss_pred CccccccCcc
Q 012653 86 NSRVRDYGLA 95 (459)
Q Consensus 86 ~~tL~dygI~ 95 (459)
..+|.+..-.
T Consensus 151 ~ktl~e~l~~ 160 (309)
T PF12754_consen 151 SKTLAEVLAD 160 (309)
T ss_dssp ----------
T ss_pred cCcHHHHHhc
Confidence 8888886533
No 216
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=53.71 E-value=43 Score=26.41 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred EEEEEeCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCcceEEEEcC
Q 012653 35 LIFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (459)
Q Consensus 35 ~I~Vtl~G~~~~l~V~-~~dTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (459)
.|.+...|....+.+. .+.|..+|+.+|+++.+++.....+.|..
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4556667788888888 89999999999999999876555666644
No 217
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=53.28 E-value=50 Score=27.73 Aligned_cols=44 Identities=7% Similarity=0.187 Sum_probs=34.5
Q ss_pred EEEEEeCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCC-cceEEEEc
Q 012653 35 LIFLSVGGSVIPMRVME-----SDSIASVKLRIQSYNGFFV-KKQKLVFE 78 (459)
Q Consensus 35 ~I~Vtl~G~~~~l~V~~-----~dTV~~LK~kIq~~~Gip~-~~QrLvf~ 78 (459)
.|.|+..|....+.+.. +.+...|+.+|++.+.++. ....|.|.
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 35567788888887774 7999999999999999987 44455664
No 218
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=52.59 E-value=32 Score=28.76 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=33.5
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCc---ceEEEE
Q 012653 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLVF 77 (459)
Q Consensus 39 tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~---~QrLvf 77 (459)
...|+++.+.+.+++++.+|+..|.++.|+... ...|.|
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 457999999999999999999999999999863 455666
No 219
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=52.38 E-value=91 Score=28.70 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=34.2
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 012653 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV 70 (459)
Q Consensus 32 ~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~ 70 (459)
..+.|.| .++|.+..+.++++.|+.++...+.++.|+..
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 3567778 67889999999999999999999999999953
No 220
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=51.05 E-value=59 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=34.5
Q ss_pred EEEEEeCCeEEEEEeCC--CCCHHHHHHHHHHHhCCCCcceEEEE
Q 012653 35 LIFLSVGGSVIPMRVME--SDSIASVKLRIQSYNGFFVKKQKLVF 77 (459)
Q Consensus 35 ~I~Vtl~G~~~~l~V~~--~dTV~~LK~kIq~~~Gip~~~QrLvf 77 (459)
+|.++..|.+..+.+.+ +-+..+|+..|+...+++ ...|.|
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 46668899999999999 669999999999999998 445544
No 221
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=50.39 E-value=9.7 Score=39.31 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=51.9
Q ss_pred CCCEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHHh--CCCCcceEEEEcCeecccCCccccccCccc--ccceeee
Q 012653 31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDYGLAD--GNVLHLV 103 (459)
Q Consensus 31 ~~sM~I~Vtl---~G~~~~l~V~~~dTV~~LK~kIq~~~--Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~--gstl~Lv 103 (459)
.....++|+. .-+.++|..+..-||.+||.-++.-. .=-...|||+|.|+.|. |..+|.|.-++. ..++||+
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgklll-d~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLL-DHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccc-cchhHHHHHHHHHHHHHHHHh
Confidence 4455566632 23567778888999999999888764 22356799999999998 888988876543 3455554
Q ss_pred e
Q 012653 104 L 104 (459)
Q Consensus 104 l 104 (459)
-
T Consensus 86 c 86 (391)
T KOG4583|consen 86 C 86 (391)
T ss_pred c
Confidence 4
No 222
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=50.06 E-value=1.2e+02 Score=25.55 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=42.1
Q ss_pred eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE----CCE-EcCC-CCcccccCCCCCCEEEEEEee
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGE-ELED-QRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~----~Gk-~LeD-~~tL~dy~I~~~svI~L~vrk 184 (459)
..++....+.+||+.++..+.+.+.++ ++.||-- ++. .|.+ ..||.|.++..|-+|.|=.|.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i~---~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNIQ---EETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-T---S-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCCC---ccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 356677889999999999999999984 5577753 333 3644 579999999999988876553
No 223
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=49.90 E-value=53 Score=25.44 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=44.1
Q ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 37 FLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 37 ~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
.|+++|+.+.+. +..|+.+|-.. .+++...-.+.+++..+.+++.. .+ +++|+.+.++-...
T Consensus 2 ~i~vNG~~~~~~--~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~--~~-L~~gD~ieIv~~Vg 63 (65)
T PRK05863 2 IVVVNEEQVEVD--EQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA--TK-LRDGARLEVVTAVQ 63 (65)
T ss_pred EEEECCEEEEcC--CCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh--hh-cCCCCEEEEEeecc
Confidence 345677776664 56787777654 57888888888999999855443 46 89999988765443
No 224
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=49.50 E-value=46 Score=26.34 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=33.6
Q ss_pred cceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 012653 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (459)
Q Consensus 118 ~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk 159 (459)
.+....+.+.+..|-.+|+++|+.+++.. .....|-|.+.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~--~~~~~l~Y~De 48 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLD--NQSFTLKYQDE 48 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCC--CCCeEEEEECC
Confidence 56778899999999999999999999976 56778888643
No 225
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=49.18 E-value=27 Score=36.73 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=52.4
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCC-CCcceEEE--EcCeecccCCccccccCcccccce
Q 012653 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGF-FVKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (459)
Q Consensus 32 ~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gi-p~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstl 100 (459)
.+|||.+. +|..+...++.+.||.+|+.-|.....- +...+.|+ |--++|.+++.||++-|+.+-..+
T Consensus 306 TsIQIRLa-nG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLA-NGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEec-CCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34555543 6778888899999999999999988643 34456666 568999988999999999876544
No 226
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=48.59 E-value=45 Score=37.83 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=49.4
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEE--cCCCCcccccCC--CCCCEEEEEEeeCCccc
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE--LEDQRLITDICK--RNEAVIHLLVRKSAKVR 189 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~--LeD~~tL~dy~I--~~~svI~L~vrks~kv~ 189 (459)
.++..+.+.+++..|+..++.+|.+.+|+| ...|.|+|.|.. ++|. .-++ .-++.|.++.+.+..+-
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgip--e~~qeLL~e~~~~h~~~~----~Q~~~dg~~~~l~l~~~~~~~v~ 392 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIP--EGKQELLFEGGLSHLEDS----AQCIPDGLDSPLYLVSDQDKNVD 392 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCC--CccceeeeecCccccCcc----cccCCCCCCCceEEEecCCCcch
Confidence 456778899999999999999999999998 899999998654 3441 1111 14566777666655544
No 227
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=47.66 E-value=34 Score=37.80 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=43.1
Q ss_pred eeeeeeccCCChHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~--gip~----~~~~Q~Li~----~Gk-~LeD~-------------~tL~dy~I~~~ 175 (459)
..+.+.|=..|||.++|+||-... +.|. .+++.-|.+ .|+ .|.|. .||..|+|.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 457788889999999999997763 3321 245555654 223 34443 68999999999
Q ss_pred CEEEEEEeeC
Q 012653 176 AVIHLLVRKS 185 (459)
Q Consensus 176 svI~L~vrks 185 (459)
+++-|+.+..
T Consensus 282 a~vaLv~k~~ 291 (539)
T PF08337_consen 282 ATVALVPKQH 291 (539)
T ss_dssp EEEEEEES--
T ss_pred ceEEEeeccc
Confidence 9999987764
No 228
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=46.90 E-value=1.1e+02 Score=23.98 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=36.7
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
...++++...||.++-+.+ +++ .+...+..+|+.+.. +.-+++++.|.++
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~--~~~v~v~vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFN--TESAIAKVNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCC--CccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence 5667888888999887665 544 566677889998853 5556778888875
No 229
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=46.72 E-value=1.2e+02 Score=25.14 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 32 ~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
..+.+.|+++|+.+.+ ....||.+|-.. .+++...--+..+|..+.+ ..-..+-+++|+.|.++--.
T Consensus 15 ~~~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr--~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 15 AMVLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVPR--SEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred CCceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeCH--HHcCcccCCCCCEEEEEEEe
Confidence 3345556778887666 456788877664 4677766677799999973 45667778899988876543
No 230
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.01 E-value=9 Score=35.26 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=43.7
Q ss_pred CcEEEEEecCCCeEEEEEecCCCCCCCcCCCCCCCCCCCCCcccCCccCCCchhhheeeeeeccC
Q 012653 280 GGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHP 344 (459)
Q Consensus 280 ~g~y~~~~~~g~~~~~vfKP~deEp~~~~nP~~~~~~~~~~~~~~~~~~g~~~~rEvaAylld~~ 344 (459)
-|+|.++|-+ .-.+=+=.+++.|+.--| +...++||+-||.+.+.|+-+-|-|.+-+-|
T Consensus 94 rG~yVlqD~~---Fr~l~~~s~G~~~~~~a~---~flaFpcGliRGvLs~LGi~siVtA~v~slP 152 (163)
T KOG3316|consen 94 RGTYVLQDNK---FRWLTSMSPGTQYLEEAP---KFLAFPCGLIRGVLSNLGISSIVTASVSSLP 152 (163)
T ss_pred CceEEEecCc---eeeeeecCchhHHHHhcC---CeEEeehhHHHHHHhhCCCceEEeeecCCCC
Confidence 5999999854 233333336666666555 4457899999999999999999988877754
No 231
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=44.85 E-value=43 Score=25.83 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=36.9
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
|+|+| +|+ .+++....|+..||.++... .-.++++|-+.. ++.. +++++.|.+.-
T Consensus 1 M~I~v--N~k--~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~-~d~~-----L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV--NEK--EIETEENTTLFELRKESKPD------ADIVILNGFPTK-EDIE-----LKEGDEVFLIK 55 (57)
T ss_pred CEEEE--CCE--EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccC-Cccc-----cCCCCEEEEEe
Confidence 45555 333 35567888999999986643 236899999997 5444 45677766543
No 232
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=43.74 E-value=92 Score=24.90 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=39.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHh-CCCC--cceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 43 SVIPMRVMESDSIASVKLRIQSYN-GFFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 43 ~~~~l~V~~~dTV~~LK~kIq~~~-Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
....+++....|+++|+..+.... ++.. ..-.+..+|+... + ++-+++|+.|.+....+|
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-~-----~~~l~dgDeVai~PpvsG 81 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-E-----SAALKDGDELAIIPPISG 81 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-C-----CcCcCCCCEEEEeCCCCC
Confidence 567788888999999999997664 1111 1113456676654 3 345667888887766554
No 233
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=43.35 E-value=1.6e+02 Score=25.33 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCEEEEEEeC--CeEEEEEeCCCCCHHHHHHHHHHHh----C--CCCc-ceEEEEcCee--cccCCccccccC-----c
Q 012653 31 NDSILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYN----G--FFVK-KQKLVFEGRE--LARSNSRVRDYG-----L 94 (459)
Q Consensus 31 ~~sM~I~Vtl~--G~~~~l~V~~~dTV~~LK~kIq~~~----G--ip~~-~QrLvf~Gk~--L~~D~~tL~dyg-----I 94 (459)
...+.|.|... ...+++.+.+++|+.+|...+-.+. + -+.. +-.|--.|+. |. .+..|.+|. +
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~-~~~~L~~~~yIr~cl 93 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLL-GDHPLGSFEYIRNCL 93 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEe-CCeeeechHHHHHHH
Confidence 45666777433 4679999999999999998877761 1 1122 3445556654 55 566777665 4
Q ss_pred ccccceeeeeec
Q 012653 95 ADGNVLHLVLRL 106 (459)
Q Consensus 95 ~~gstl~LvlrL 106 (459)
..+..++|++..
T Consensus 94 ~~~~~~~L~L~~ 105 (108)
T smart00144 94 KNGREPHLVLMT 105 (108)
T ss_pred hcCCCceEEEEe
Confidence 556677776543
No 234
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=43.23 E-value=17 Score=39.89 Aligned_cols=28 Identities=43% Similarity=0.742 Sum_probs=23.4
Q ss_pred EeecCCCCCCcEEEecCCCCceEEEeeecCCc
Q 012653 424 RLANTDRHAGNILVSKDEGGQIKLVPIDHGYC 455 (459)
Q Consensus 424 ~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~ 455 (459)
=..=+|=|.|||+|..+ |+ ++.+|||..
T Consensus 285 gffHaDpHpGNi~v~~~--g~--i~~lDfGi~ 312 (517)
T COG0661 285 GFFHADPHPGNILVRSD--GR--IVLLDFGIV 312 (517)
T ss_pred CccccCCCccceEEecC--Cc--EEEEcCcce
Confidence 34568999999999987 55 999999973
No 235
>PRK07440 hypothetical protein; Provisional
Probab=43.18 E-value=1.4e+02 Score=23.52 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=44.0
Q ss_pred EEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 36 I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
+.|+++|+.+.+ ....||.+|-. ..++++..--+..+|..+.+ ..-.++-+++++.+.++--.
T Consensus 5 m~i~vNG~~~~~--~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r--~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 5 ITLQVNGETRTC--SSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR--QFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred eEEEECCEEEEc--CCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEEe
Confidence 445567776444 56788887775 45677776777799999974 45566778889988776443
No 236
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=43.04 E-value=1.2e+02 Score=23.10 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=42.2
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
|+++|+.+.+ ....||.++-.. .+++...-.+..+|..+.+ ..-.++-+++|+.+.++.-.
T Consensus 3 i~vNG~~~~~--~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r--~~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 3 IQLNGEPREL--PDGESVAALLAR----EGLAGRRVAVEVNGEIVPR--SQHASTALREGDVVEIVHAL 63 (66)
T ss_pred EEECCeEEEc--CCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH--HHcCcccCCCCCEEEEEEEe
Confidence 4567776544 567788887754 5787777778899988863 34455667888888776543
No 237
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=42.47 E-value=6.8 Score=39.54 Aligned_cols=138 Identities=23% Similarity=0.301 Sum_probs=64.1
Q ss_pred cccCC--CCcEEEEEecCC-CeEEEEEecCCCCCCCcCCCCCCCCCCCCCcccCCccCCCchhhheeeeeeccCCCCccc
Q 012653 274 PSSEG--SGGAYFMQDSSG-QKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYS 350 (459)
Q Consensus 274 ~~~~g--s~g~y~~~~~~g-~~~~~vfKP~deEp~~~~nP~~~~~~~~~~~~~~~~~~g~~~~rEvaAylld~~~~~~~~ 350 (459)
++..| |||+||+..-+| .+..+|.|+..- -..|+=||+|-
T Consensus 32 ~s~~g~ns~gv~fv~~f~~~~~~avViK~s~t-----------------------------~~~E~~~s~La-------- 74 (275)
T PF09192_consen 32 HSEHGVNSGGVFFVATFSGSKEEAVVIKFSST-----------------------------IQQEVFASELA-------- 74 (275)
T ss_dssp EEEE-STTS-EEEEEETTE----EEEEE--TT-----------------------------HHHHHHHHHHH--------
T ss_pred hhccccCCCCEEEEEEcCCCceEEEEEecCCc-----------------------------hHHHHHHHHHH--------
Confidence 34445 999999997665 235888887633 37788888888
Q ss_pred ccccccCCCCCCceEEEEeccccccCC-----------CCC-C--CCCCCcceeeEeeeecCcCCcccCCCC-CCC----
Q 012653 351 LHDEERGFAGVPPTVMVRCLHKGFNHP-----------NGY-K--HDLENVKIGSLQMFVENVGSCEEMGPR-AFP---- 411 (459)
Q Consensus 351 ~~~~~~g~~~VP~T~~v~~~~~~f~~~-----------~~~-~--~~~~~~k~GSlQ~fv~~~~~~~~~~~~-~f~---- 411 (459)
..||. -+|--.+++...+-|.-= +.. . +..+..-.==+++||++. ...++... .|.
T Consensus 75 ---~~Lgv-~~P~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~-~L~e~~~~~~f~~~~~ 149 (275)
T PF09192_consen 75 ---RWLGV-PTPQMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGK-PLNELNHKEYFSPEKS 149 (275)
T ss_dssp ---HHCT------EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EE-ESTT--SS--SHHHHS
T ss_pred ---HHhCC-CCCceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcccccCCcch
Confidence 46774 567777776544321100 000 0 000011112345666642 12222222 122
Q ss_pred ----hhhhhheeeecEEeecCCCCC------------CcEEEecCCCCceEEEeeecCC
Q 012653 412 ----VDEVHKISVLDIRLANTDRHA------------GNILVSKDEGGQIKLVPIDHGY 454 (459)
Q Consensus 412 ----~~ev~ki~ilD~~~~N~DR~~------------gNiLv~~~~~~~~~l~~IDhg~ 454 (459)
.+++-||.+||+.++|.||-. .|||+....+| +.+..||..+
T Consensus 150 ~~~~~~~LG~ii~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~~-~~~~~i~~~i 207 (275)
T PF09192_consen 150 GEKRLEQLGRIIAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPNG-WYFSLIDSNI 207 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHT--SSS----SSS-S---GGGEEEESB--T-T-EEE-S---
T ss_pred HHHHHHHHHhHHhhhhhhcCcccCcccccccCCCCChhheEEeccccc-ceeeeccccc
Confidence 246889999999999999954 68998765333 3466666554
No 238
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=41.87 E-value=67 Score=26.38 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~ 78 (459)
|+.|.+.+..+..+|..+|.++...+++.-+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 78889999999999999999999999999999985
No 239
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=40.94 E-value=1.3e+02 Score=25.79 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=45.4
Q ss_pred ceeeeeeccCCChHHHHHHHHHHh----cCCCCCCC-cEEEEECCEE--cCCCCccccc-----CCCCCCEEEEEEeeC
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKK----GREFVDLK-NQELICDGEE--LEDQRLITDI-----CKRNEAVIHLLVRKS 185 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~----~gip~~~~-~Q~Li~~Gk~--LeD~~tL~dy-----~I~~~svI~L~vrks 185 (459)
...+++.++.++|+.+|.+.+-.+ .+...+++ +-.|--.|+. |.....|.+| |++.+..++|++...
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~~ 106 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMTL 106 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEec
Confidence 456889999999999998887665 22222233 5566656644 5566666666 467888888887643
No 240
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=40.86 E-value=1.2e+02 Score=24.08 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=41.4
Q ss_pred eEEEEEeCCC-CCHHHHHHHHHHHhC-CC--CcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 43 SVIPMRVMES-DSIASVKLRIQSYNG-FF--VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 43 ~~~~l~V~~~-dTV~~LK~kIq~~~G-ip--~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
....+++... .||.+|+..+.++.. +. .....+..+++... + +.-|++++.|.+....+++
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEeCCCCCC
Confidence 3467788766 899999999988864 11 12234556777765 3 4567788988887766653
No 241
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=40.49 E-value=79 Score=24.23 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=42.5
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 39 tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
+++|+.+.+ ....||.+|..++ +++.+.-.+..+|+.+.+ ..-.++-+.+|+.+.+.....|
T Consensus 3 ~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~--~~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 3 TVNGEPREV--EEGATLAELLEEL----GLDPRGVAVALNGEIVPR--SEWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred EECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccC
Confidence 456666655 4678999888765 466666677789999873 2333456788998887765544
No 242
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=39.73 E-value=1.2e+02 Score=32.28 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=53.2
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE----CCEE--cCCCCcccccCCCCCCEEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGEE--LEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~----~Gk~--LeD~~tL~dy~I~~~svI~L~v 182 (459)
|.+.+|...|. ..++++.+++.+.|-.+|-.-.....++++..++- .|.. +..++++.|.|++.|..|.|-.
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 34556655554 57899999999999999877765444566666654 3342 3457899999999999999987
No 243
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=39.71 E-value=1.1e+02 Score=24.74 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=41.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCC-----C------CcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 43 SVIPMRVMESDSIASVKLRIQSYNGF-----F------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 43 ~~~~l~V~~~dTV~~LK~kIq~~~Gi-----p------~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
+...+++. ..||.+|...+.++..- - .....+..+|+... .+.. .-+++|+.|.+...++++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCC---CCCCCCCEEEEeCCCcCC
Confidence 45677776 88999999999887531 0 01234556777775 3321 567889999888777653
No 244
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=38.54 E-value=2e+02 Score=26.55 Aligned_cols=110 Identities=18% Similarity=0.329 Sum_probs=70.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccccccee----eeeecccc-cceeeeeecc
Q 012653 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH----LVLRLSDL-QAITVTTVCG 119 (459)
Q Consensus 45 ~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~----LvlrLsd~-m~I~Vkt~~G 119 (459)
++-+...-+|.+.|-.+|.+..|+ .|.+.+|..|.. ---||...|.-+. -.+...|. +.+.|++ |
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk----~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPK----TVPYGPARGTPVNHPDRKVINVGGEEVELTVKV--G 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCC----CCCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e
Confidence 444566778999999999988776 588899999982 2357776665332 22333322 4455554 3
Q ss_pred eeeeeeccC-CChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccC
Q 012653 120 KVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171 (459)
Q Consensus 120 k~~~ieV~~-~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~ 171 (459)
+ +-++++. .+.+..+++.-.+.+-.+ .. +..|+-+....|++||-
T Consensus 76 r-i~lele~~~~~ie~I~~iCee~lpf~-----y~-i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 R-IILELEDEEDVIEKIREICEEVLPFG-----YD-IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred E-EEEEecCcHHHHHHHHHHHHHhCCCc-----eE-eeeeEEeccCCchhhhh
Confidence 3 5677777 666666665444433211 11 34699999999999996
No 245
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=1.2e+02 Score=26.52 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCCEEEEEEeCC-----eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeec
Q 012653 31 NDSILIFLSVGG-----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82 (459)
Q Consensus 31 ~~sM~I~Vtl~G-----~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L 82 (459)
.+.++|.+.-.| +.-.+.|++++|++.+-..|.+..++++..|..+|-...-
T Consensus 28 ~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 28 IRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 356666663333 4567789999999999999999999999999877755443
No 246
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=36.45 E-value=46 Score=25.87 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=44.6
Q ss_pred cceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 118 ~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.| ...+.+....||.+|.+.+..+...........+..+|+...+ .-.+.-+++++.|.++
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAIL 71 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEE
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEE
Confidence 45 5678888999999999999888631101266788899999987 2345556778888875
No 247
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=35.74 E-value=1.8e+02 Score=23.05 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=43.0
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 35 ~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+++.++|+.+.+ ....|+++|-.+ .|++...--+..+|..+.+ ..-.++-+++++.+.++-
T Consensus 2 ~m~i~~ng~~~e~--~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr--~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 2 PMTIQLNGKEVEI--AEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR--SQWADTILKEGDRIEVVR 63 (68)
T ss_pred cEEEEECCEEEEc--CCCCcHHHHHHH----hCCCCceEEEEECCEEccc--hhhhhccccCCCEEEEEE
Confidence 4556666666555 455889888764 6788777778899999973 445566777777776543
No 248
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=35.06 E-value=15 Score=46.95 Aligned_cols=41 Identities=37% Similarity=0.654 Sum_probs=35.5
Q ss_pred hhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
..+..+.|..|++.=-|||.||||+.+. .|+ ++-||=|+||
T Consensus 1932 ~SlA~ySvigYiLglgDRH~~NIliD~~-sG~--viHiDFg~il 1972 (2105)
T COG5032 1932 RSLAVYSVIGYILGLGDRHPGNILIDRS-SGH--VIHIDFGFIL 1972 (2105)
T ss_pred HHHHHHHHHHHHccCCCcCCceEEEEcC-CCc--EEEehHHHHH
Confidence 4688999999999999999999999884 254 8999998876
No 249
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=35.03 E-value=17 Score=37.77 Aligned_cols=57 Identities=33% Similarity=0.322 Sum_probs=47.1
Q ss_pred CCEEEEE--EeCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccc
Q 012653 32 DSILIFL--SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89 (459)
Q Consensus 32 ~sM~I~V--tl~G~~~~l~V~-~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL 89 (459)
.++++.. ..+|.++.+.+. .++.+..+|.|+....++++..|++.+.|.-|. |+..+
T Consensus 280 ~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~-d~~~~ 339 (341)
T KOG0007|consen 280 VSIQVSRPVPADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLK-DNRSL 339 (341)
T ss_pred cceecccccCCCCceeeeccccccccccccccccccccccchhheeeccCCcccC-ccccc
Confidence 3444444 467888888888 799999999999999999999999999999998 55443
No 250
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=34.80 E-value=1.3e+02 Score=23.84 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=31.5
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC
Q 012653 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (459)
Q Consensus 40 l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (459)
-+|+...+.|.+++||.++-.++.++.|+.+..-.++..|
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 3678899999999999999999999999998877666443
No 251
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=34.69 E-value=2.1e+02 Score=22.72 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=38.6
Q ss_pred eeeeccCC-ChHHHHHHHHHHhcC-CCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 122 FEFHVERG-RNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 122 ~~ieV~~~-~TV~~LK~kI~~~~g-ip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
..+++... .||.+|++.+.++.. .........+..+++...+ +.-+++++.|.++
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 46778776 899999999988864 1101234567788888774 4456778888875
No 252
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=34.50 E-value=1.6e+02 Score=22.76 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=47.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...+.+....||.+|...+..+..- ....-.+..+|+... + .-.++-+++++.|.+....+|+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~-~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVP-D--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEG-G--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcC-C--ccCCcCcCCCCEEEEECCCCCC
Confidence 6677888999999999999888531 124556778898887 4 3556777889999887766653
No 253
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=34.28 E-value=37 Score=32.74 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCEEEEE-Ee-------CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCc
Q 012653 32 DSILIFL-SV-------GGSVIPMRVMESDSIASVKLRIQSYNGFFVK 71 (459)
Q Consensus 32 ~sM~I~V-tl-------~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~ 71 (459)
+.+.|.| .+ -|-.+.+.|.+++|..++|.||+++.|++-.
T Consensus 114 ~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 114 GEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 4577888 33 2567888999999999999999999998744
No 254
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=33.75 E-value=1.5e+02 Score=31.99 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=56.1
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC----Ccce--EEE-EcCeecccCCccccccCcccccceeeeeec
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFF----VKKQ--KLV-FEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip----~~~Q--rLv-f~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
-+++|.-..+...+-+..+..|+++--.|.+..+-. .... .|. .+|.+|+ .+.+|.+.+|.||++++|..+.
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~-~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLD-PDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCC-CCCCHHHcCCCCCCeEEEeeCC
Confidence 366774455677887888999999999999887642 1122 233 4788997 8999999999999999998755
Q ss_pred ccc
Q 012653 107 SDL 109 (459)
Q Consensus 107 sd~ 109 (459)
...
T Consensus 82 ~~~ 84 (452)
T TIGR02958 82 ATE 84 (452)
T ss_pred CCC
Confidence 433
No 255
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=33.58 E-value=73 Score=26.19 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=32.4
Q ss_pred eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G 158 (459)
-++.+.+.+..+..+|.++|+++...+ ++..+|.|.-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~--~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQ--AQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCC--hhhcEEEecC
Confidence 356789999999999999999999988 8888898843
No 256
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=33.41 E-value=1.4e+02 Score=22.87 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=42.1
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 39 tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
.++|+.+.+ ....||.+|...+ ++++..-.+..+|+.+.+ ..-.++-+++++.+.++.-..|
T Consensus 2 ~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~--~~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 2 TVNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPR--SEWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred EECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccC
Confidence 356666665 4567899888754 566666667789998863 2344566888998887665443
No 257
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=32.71 E-value=2.3e+02 Score=21.79 Aligned_cols=63 Identities=8% Similarity=0.110 Sum_probs=41.5
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
|+++|+.+.+ ....||.+|... .++....-.+..++..+.+ ..-.++-+++++.+.++....|
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r--~~w~~~~L~~gD~Ieii~~v~G 65 (66)
T PRK08053 3 ILFNDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR--EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_pred EEECCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh--HHcCccccCCCCEEEEEEEccC
Confidence 4557777666 456788888865 3455455567788999874 3344556888988877654443
No 258
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=32.23 E-value=97 Score=35.90 Aligned_cols=79 Identities=14% Similarity=0.254 Sum_probs=60.3
Q ss_pred cceeeeeeccC-CChHHHHHHHHHHhcCCCCCCCcEEEEE-CCEEcCCCCcccccC--CCCCCEEEEEEeeCCcccCCCC
Q 012653 118 CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELIC-DGEELEDQRLITDIC--KRNEAVIHLLVRKSAKVRAKPV 193 (459)
Q Consensus 118 ~Gk~~~ieV~~-~~TV~~LK~kI~~~~gip~~~~~Q~Li~-~Gk~LeD~~tL~dy~--I~~~svI~L~vrks~kv~~~p~ 193 (459)
.|..++++.+. ..|+..||..|+++.|+. +.+|.++- +|.-+.-++.|..|+ -.+.+.|+++-.+.....-.+.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~a--Iq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a 80 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHA--IQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHA 80 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchh--hceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCC
Confidence 57778888776 559999999999999987 77777664 777788899999998 3677889988776666555454
Q ss_pred CCcce
Q 012653 194 QKDFE 198 (459)
Q Consensus 194 ~kd~e 198 (459)
+-|..
T Consensus 81 ~pdtT 85 (1424)
T KOG4572|consen 81 GPDTT 85 (1424)
T ss_pred CCCce
Confidence 44443
No 259
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=32.00 E-value=28 Score=38.50 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=27.7
Q ss_pred eecEEeecCCCCCCcEEEecCCCCceEEEeeecCCc
Q 012653 420 VLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYC 455 (459)
Q Consensus 420 ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~ 455 (459)
||.--+.-+|=|.|||||..+..+.-+++.||.|++
T Consensus 276 if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGiv 311 (537)
T PRK04750 276 VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIV 311 (537)
T ss_pred HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceE
Confidence 355678899999999999886322335889999985
No 260
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=31.55 E-value=1.2e+02 Score=24.09 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=36.7
Q ss_pred eeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC--EEcCCCCcc
Q 012653 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG--EELEDQRLI 167 (459)
Q Consensus 113 ~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G--k~LeD~~tL 167 (459)
.|.-.+|+...+.|.++.||.++-.++.++.++. ++.-.++..| +.|+.+...
T Consensus 4 ~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~--~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 4 RVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLN--PECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT----CCCEEEEEEEEEEEE-TTSBG
T ss_pred EEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCC--HHHEEEEEcCCCccccCCCce
Confidence 3445788999999999999999999999999987 6666665433 445444333
No 261
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=31.51 E-value=1.7e+02 Score=23.27 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=36.5
Q ss_pred eeeeeeccCCChHHHHHHHHHHhcCCCCC-CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKGREFVD-LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~gip~~-~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
....+++....||++|++.+......... .....+..||+... .++-+++++.|.++
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 34567777888999999999776521100 01224667888765 34456778888774
No 262
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=31.13 E-value=2.2e+02 Score=21.73 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=35.8
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.+|+.+.+ +. .|+.+|.+.+ ++. ++...+-.+++.+. ...-.+.-+++++.|.++
T Consensus 5 ~Ng~~~~~--~~-~tl~~Ll~~l----~~~--~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 5 VNGETLQT--EA-TTLALLLAEL----DYE--GNWLATAVNGELVH-KEARAQFVLHEGDRIEIL 59 (65)
T ss_pred ECCeEEEc--Cc-CcHHHHHHHc----CCC--CCeEEEEECCEEcC-HHHcCccccCCCCEEEEE
Confidence 45777776 33 5888887654 444 45556778998876 222235557788888875
No 263
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=31.05 E-value=2.1e+02 Score=22.30 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=42.0
Q ss_pred EEeCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 38 LSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~-dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
|+++|+.+.+. .. .||.+|-. ..++++..--+..+|..+.+ ..-.++-+++++.+.++--..
T Consensus 3 I~vNG~~~~~~--~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r--~~w~~~~L~~gD~iEIv~~Vg 65 (67)
T PRK07696 3 LKINGNQIEVP--ESVKTVAELLT----HLELDNKIVVVERNKDILQK--DDHTDTSVFDGDQIEIVTFVG 65 (67)
T ss_pred EEECCEEEEcC--CCcccHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEEec
Confidence 45677766553 43 46776664 45777776677799999984 455566788899888765433
No 264
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=30.84 E-value=60 Score=34.23 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=52.7
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC-CCCcccccCCCCCCEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE-DQRLITDICKRNEAVIH 179 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~Le-D~~tL~dy~I~~~svI~ 179 (459)
-.|-|+..+|+.+...+..+.||.+++.-|...-..- +...+.|+ |=-++|. |..||.+-++.|-.++.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~-~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGD-SSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCC-cCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 4577888999999999999999999999999886422 13345555 5567884 58899999987766554
No 265
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=29.71 E-value=1.4e+02 Score=24.24 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=35.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCe
Q 012653 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (459)
Q Consensus 41 ~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (459)
+|+.-.+.+.+.+||.++-.++.++.|+..+.-.++.-|.
T Consensus 8 dg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 8 DGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 6788899999999999999999999999988877776554
No 266
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.56 E-value=22 Score=45.69 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=34.5
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.|..=.++=|++.=.|||+.||||... ..+++.||-|.+|
T Consensus 2616 svA~sS~VGyILGLGDRH~qNILid~~---taEviHIDlGiAF 2655 (2806)
T KOG0892|consen 2616 SVAASSMVGYILGLGDRHGQNILIDQQ---TAEVIHIDLGIAF 2655 (2806)
T ss_pred hHHHHHHHHHHhcccchhhhheeeccc---ccceEEEeeeeeh
Confidence 466777889999999999999999874 4469999999998
No 267
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=29.36 E-value=76 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=22.7
Q ss_pred EEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 153 ELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 153 ~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.|-|.|++|..+.+|.||.- .+..-.++++-.
T Consensus 3 ~LW~aGK~l~~~k~l~dy~G-kNEKtKiivKl~ 34 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIG-KNEKTKIIVKLQ 34 (98)
T ss_pred eEEeccccccCCCcHHHhcC-CCcceeEEEEec
Confidence 58899999999999999953 333334444433
No 268
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=29.23 E-value=18 Score=36.99 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHH----------hcCCCCCCCcEE-----EEECCEEcCCCCcccccC
Q 012653 129 GRNVGYVKQQIAK----------KGREFVDLKNQE-----LICDGEELEDQRLITDIC 171 (459)
Q Consensus 129 ~~TV~~LK~kI~~----------~~gip~~~~~Q~-----Li~~Gk~LeD~~tL~dy~ 171 (459)
+.+|.++|..++. +.++| .+..+ |.|+-+.+-|.++|.|..
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 5799999999999 78887 77777 999999999999998865
No 269
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=28.99 E-value=2.5e+02 Score=21.12 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=38.9
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
|+++|+.+.+ .+..|+.++...+. +. ....+..+|....+ ..-.+.-+++|+.|.++....+
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~--~~~~~~~L~~gD~vei~~~v~G 64 (65)
T PRK06944 3 IQLNQQTLSL--PDGATVADALAAYG----AR-PPFAVAVNGDFVAR--TQHAARALAAGDRLDLVQPVAG 64 (65)
T ss_pred EEECCEEEEC--CCCCcHHHHHHhhC----CC-CCeEEEECCEEcCc--hhcccccCCCCCEEEEEeeccC
Confidence 4567776655 46778998887653 33 23455678888752 2233445778998887765544
No 270
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=28.85 E-value=2e+02 Score=22.64 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=32.3
Q ss_pred cceeee-eeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC
Q 012653 118 CGKVFE-FHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (459)
Q Consensus 118 ~Gk~~~-ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G 158 (459)
.+.... +.+.+..+-.+|+++|+++++.+ .....|.|.+
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLL--DEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTS--TSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCC--CccEEEEeeC
Confidence 455555 88999999999999999999976 6788888844
No 271
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=28.07 E-value=1.3e+02 Score=23.49 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=31.7
Q ss_pred cceeeeeecc-CCChHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 012653 118 CGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (459)
Q Consensus 118 ~Gk~~~ieV~-~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk 159 (459)
.|....+.+. ...|..+|+++|+++++.. .....|.|.+.
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~y~D~ 48 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLD--AVSFKLKYPDE 48 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCC--CCcEEEEeeCC
Confidence 3567778888 8999999999999999876 45666777553
No 272
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=27.55 E-value=3.1e+02 Score=21.69 Aligned_cols=33 Identities=18% Similarity=0.023 Sum_probs=27.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCcceEEE
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLV 76 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gi--p~~~QrLv 76 (459)
..++.|.++.|+.+|-..+.++.++ .+..-.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 8899999999999999999999998 34444563
No 273
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=27.10 E-value=77 Score=32.23 Aligned_cols=37 Identities=24% Similarity=0.563 Sum_probs=29.9
Q ss_pred EccCCCccHHHHHHHHHHHHHHHcCCCCccccCCCCcEEEEEecCCC
Q 012653 245 VESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQ 291 (459)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~gs~g~y~~~~~~g~ 291 (459)
+...+-+--....||+++.+||.+ +|||||.+...|.
T Consensus 119 ~G~gvyLv~~~a~LvqdIi~AlNr----------TGGSyy~~G~ngg 155 (305)
T PF04639_consen 119 LGVGVYLVFSAATLVQDIIDALNR----------TGGSYYYRGNNGG 155 (305)
T ss_pred EeeEEEEEEEHHHHHHHHHHHHHh----------CCCeeEEEccCCC
Confidence 344555666788999999999987 8999999988774
No 274
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.10 E-value=90 Score=32.45 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=41.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc---Ceec----ccCCccccccCccccccee
Q 012653 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---GREL----ARSNSRVRDYGLADGNVLH 101 (459)
Q Consensus 45 ~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~---Gk~L----~~D~~tL~dygI~~gstl~ 101 (459)
-..-|.-+-||.++|.++..+.|+.+.+++|++- |+.- .+-+..|-.|+|++|+.+-
T Consensus 350 ~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~l 413 (418)
T KOG2982|consen 350 ASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFL 413 (418)
T ss_pred cceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEee
Confidence 3444556679999999999999999999999973 3331 1244566667777776554
No 275
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=26.70 E-value=2.8e+02 Score=22.29 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=37.5
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCC-----CC---C-CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGRE-----FV---D-LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gi-----p~---~-~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
...+++. ..||.+|.+.+.++... .. . .....+..+|+....... .-+++++.|.++
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 4567776 78999999999888641 10 0 123556678887754321 456788888875
No 276
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=26.54 E-value=1.7e+02 Score=24.28 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=36.2
Q ss_pred EEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc
Q 012653 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (459)
Q Consensus 36 I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~ 78 (459)
..|+..|.+-.+.+...-|-+.|+.||+....+|....-+.|-
T Consensus 3 fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 3 FKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred EEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 4557788888888888899999999999999999887777774
No 277
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=26.48 E-value=3e+02 Score=23.17 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=41.0
Q ss_pred CCCCEEEEEEe--CCeEEEEEeCCCCCHHHHHHHHHHH--h--CCCCc--ceEEEEcCee--cccCCccccccC
Q 012653 30 SNDSILIFLSV--GGSVIPMRVMESDSIASVKLRIQSY--N--GFFVK--KQKLVFEGRE--LARSNSRVRDYG 93 (459)
Q Consensus 30 ~~~sM~I~Vtl--~G~~~~l~V~~~dTV~~LK~kIq~~--~--Gip~~--~QrLvf~Gk~--L~~D~~tL~dyg 93 (459)
....+.|.|.. .+..+++.++.+.|+.+|..++-.+ . ..... .-.|--.|+. |. .+.+|.+|.
T Consensus 13 ~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~-g~~~L~~y~ 85 (106)
T PF00794_consen 13 QNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLL-GDHPLSQYE 85 (106)
T ss_dssp SSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE--SSS-GGGBH
T ss_pred CCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEee-CCeeeeccH
Confidence 36678888843 4678999999999999999888777 2 22211 3455566655 55 667777775
No 278
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=26.35 E-value=1.7e+02 Score=23.26 Aligned_cols=35 Identities=14% Similarity=-0.036 Sum_probs=30.2
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li 155 (459)
..++.|..++|+.+|-+.+.+++++..++.+-.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 56689999999999999999999985567788885
No 279
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=26.13 E-value=2.4e+02 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=26.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 012653 42 GSVIPMRVMESDSIASVKLRIQSYNGFF 69 (459)
Q Consensus 42 G~~~~l~V~~~dTV~~LK~kIq~~~Gip 69 (459)
+...++.|..++|..+|-..+.++.++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6779999999999999999999999988
No 280
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=25.78 E-value=1.2e+02 Score=27.09 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=35.8
Q ss_pred EeCC-CCCHHHHHHHHHHH----hCCCCcc------eEEEEc-----------------Ceec--ccCCccccccCcccc
Q 012653 48 RVME-SDSIASVKLRIQSY----NGFFVKK------QKLVFE-----------------GREL--ARSNSRVRDYGLADG 97 (459)
Q Consensus 48 ~V~~-~dTV~~LK~kIq~~----~Gip~~~------QrLvf~-----------------Gk~L--~~D~~tL~dygI~~g 97 (459)
.|+. +.||.+|+..+.+. -|++|-+ .+++.. .+.| .+++.+|.++||.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 88999988877766 4554432 233321 1445 237788888888888
Q ss_pred cceeee
Q 012653 98 NVLHLV 103 (459)
Q Consensus 98 stl~Lv 103 (459)
..|-+.
T Consensus 101 TEiSfF 106 (122)
T PF10209_consen 101 TEISFF 106 (122)
T ss_pred ceeeee
Confidence 766543
No 281
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=25.71 E-value=2.7e+02 Score=22.85 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=39.2
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE-ECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li-~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
+..+.+.+++..||+++- +..|+| ..+..++ .||+..+ -+|-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP--~tEV~~i~vNG~~v~-----~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVP--HTEVGLILVNGRPVD-----FDYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCC--hHHeEEEEECCEECC-----CcccCCCCCEEEEE
Confidence 567888999999998864 457888 6666544 6999887 46777888988875
No 282
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=25.18 E-value=2.2e+02 Score=23.79 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=35.1
Q ss_pred eeeee-ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 012653 112 ITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (459)
Q Consensus 112 I~Vkt-~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk 159 (459)
|.||. ..|....+.|.++-+-.+|.++|..++++. ....|-|...
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~---~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK---RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC---CceEEEEEcC
Confidence 34443 367888999999999999999999999964 4566667555
No 283
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=24.55 E-value=1.8e+02 Score=25.93 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=37.7
Q ss_pred eccC-CChHHHHHHHHHHhc----CCCC----CCCcEEEEEC-----------------CEEc---CCCCcccccCCCCC
Q 012653 125 HVER-GRNVGYVKQQIAKKG----REFV----DLKNQELICD-----------------GEEL---EDQRLITDICKRNE 175 (459)
Q Consensus 125 eV~~-~~TV~~LK~kI~~~~----gip~----~~~~Q~Li~~-----------------Gk~L---eD~~tL~dy~I~~~ 175 (459)
.|+. +.||.+|++.+.+.. +.+. .-+..+++.. +..| +++++|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3776 889999988887664 3320 1233444431 1456 67888888888888
Q ss_pred CEEEEEE
Q 012653 176 AVIHLLV 182 (459)
Q Consensus 176 svI~L~v 182 (459)
..|-++-
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 8887754
No 284
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.94 E-value=3.1e+02 Score=27.83 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=49.0
Q ss_pred CCCCEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeecccC--CccccccCccccccee
Q 012653 30 SNDSILIFLSV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLH 101 (459)
Q Consensus 30 ~~~sM~I~Vtl-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstl~ 101 (459)
.-.+-.|-|.+ +|+++.......++...|..-|....+...+--.|. |--..+.+| ..+|+..++..-+++-
T Consensus 207 ~ys~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 207 DYSQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLI 283 (290)
T ss_pred cccceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchhee
Confidence 34666777754 899999999999999999999999988765322222 223333322 2567777766665554
No 285
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=23.55 E-value=1.6e+02 Score=24.12 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCCcEEEEE--CCEEcCCCCcccccC-CCCCCEEEEEEeeCC
Q 012653 130 RNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDIC-KRNEAVIHLLVRKSA 186 (459)
Q Consensus 130 ~TV~~LK~kI~~~~gip~~~~~Q~Li~--~Gk~LeD~~tL~dy~-I~~~svI~L~vrks~ 186 (459)
.+..+|+.|.+++++++ .+..+|++ +|.+++|+ ||- --++.+..|++++..
T Consensus 21 ~sL~eL~~K~~~~l~~~--~~~~~lvL~eDGT~VddE----eyF~tLp~nT~lm~L~~ge 74 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLP--EEPVRLVLEEDGTEVDDE----EYFQTLPDNTVLMLLEKGE 74 (78)
T ss_dssp SSHHHHHHHHHHHHT-S--SSTCEEEETTTTCBESSC----HHHCCSSSSEEEEEEESSS
T ss_pred CCHHHHHHHHHHHhCCC--CcCcEEEEeCCCcEEccH----HHHhhCCCCCEEEEECCCC
Confidence 58999999999999988 57777776 66666653 332 123455555565443
No 286
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=23.47 E-value=2.5e+02 Score=30.38 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=52.1
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCC----CCCCCcEEEE-ECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGRE----FVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gi----p~~~~~Q~Li-~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
.+|+|.+.+ +...+-+..+..|+++--.|.+..+. +.....-.|. -+|..|+.+++|.+.++.+|++++|.-
T Consensus 3 ~RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 356666544 44667777888999999888887763 2111222333 388899999999999999999999854
No 287
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=23.47 E-value=2.6e+02 Score=21.25 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=36.5
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.+|+.+.+ +...||.+|.+++. ++ .+...+..+|+.+.... -.++-+++++.|.++
T Consensus 4 iNg~~~~~--~~~~tv~~ll~~l~----~~--~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii 59 (65)
T cd00565 4 VNGEPREV--EEGATLAELLEELG----LD--PRGVAVALNGEIVPRSE-WASTPLQDGDRIEIV 59 (65)
T ss_pred ECCeEEEc--CCCCCHHHHHHHcC----CC--CCcEEEEECCEEcCHHH-cCceecCCCCEEEEE
Confidence 34665554 46778998877653 44 56777889999876321 112446788888875
No 288
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=23.25 E-value=1.5e+02 Score=22.47 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=38.1
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|.|.+.+|+... +....|+.++=+.|....+-. -.--..+|+..+- ++-++++++|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~----~~~A~Vng~~vdl-----~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR----AVAAKVNGQLVDL-----DHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC----EEEEEETTEEEET-----TSBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh----eeEEEEcCEECCC-----CCCcCCCCEEEEE
Confidence 456667887666 558889999999998775421 1223467877763 4445667777763
No 289
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=23.01 E-value=1.1e+02 Score=25.80 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=44.2
Q ss_pred cceeeeee-cceeeeeeccCCChHHHHHHHHHHh----cCCCCCCCcEEEEECCEE--cCCCCcccccC-----CCCCCE
Q 012653 110 QAITVTTV-CGKVFEFHVERGRNVGYVKQQIAKK----GREFVDLKNQELICDGEE--LEDQRLITDIC-----KRNEAV 177 (459)
Q Consensus 110 m~I~Vkt~-~Gk~~~ieV~~~~TV~~LK~kI~~~----~gip~~~~~Q~Li~~Gk~--LeD~~tL~dy~-----I~~~sv 177 (459)
+.|.|... .+..+++.++.+.|+.+|-+++-.+ .+...+.++..|--.|.+ |..+..|.+|. ++.+-.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34444444 5678899999999999999888776 222211125556555533 66777888874 467777
Q ss_pred EEEEEe
Q 012653 178 IHLLVR 183 (459)
Q Consensus 178 I~L~vr 183 (459)
++|.+.
T Consensus 97 ~~L~Lv 102 (106)
T PF00794_consen 97 PHLVLV 102 (106)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777654
No 290
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=22.36 E-value=2.2e+02 Score=22.72 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=30.5
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li 155 (459)
+...++.|..++|..+|-+.+.+++++..++++-.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5556799999999999999999999977446666666
No 291
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=1e+02 Score=32.05 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=42.8
Q ss_pred eeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE---CCEE-----cCCCCcccccCCCCCCEEEE
Q 012653 124 FHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEE-----LEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 124 ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~---~Gk~-----LeD~~tL~dy~I~~~svI~L 180 (459)
.-|.-..||-++|.++..+-|+. +..++|+| +|+. ++-+..|..|+|++|+.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk--~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVK--FTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccc--cceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 44666789999999999999988 89999998 4443 23356677888888888765
No 292
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=21.21 E-value=1.8e+02 Score=24.43 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=34.4
Q ss_pred EEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceE
Q 012653 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK 74 (459)
Q Consensus 35 ~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~Qr 74 (459)
.|.| -.+|.++.+++.-+++..++-+.++++.|+|.+-+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 4555 347899999999999999999999999999977664
No 293
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=21.00 E-value=2.5e+02 Score=23.09 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCCCCcccccC--CCCCCEEEEEEeeCC
Q 012653 130 RNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITDIC--KRNEAVIHLLVRKSA 186 (459)
Q Consensus 130 ~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~LeD~~tL~dy~--I~~~svI~L~vrks~ 186 (459)
.+..+|+.|.+++++++ ....+|+ -+|.+++|. ||- +.++ +..|++.+..
T Consensus 21 ~sL~eL~~K~~~~l~l~--~~~~~lvL~eDGTeVddE----eYF~tLp~n-T~l~~l~~gq 74 (78)
T cd01615 21 SSLEELLSKACEKLKLP--SAPVTLVLEEDGTEVDDE----EYFQTLPDN-TVLMLLEPGQ 74 (78)
T ss_pred CCHHHHHHHHHHHcCCC--CCCeEEEEeCCCcEEccH----HHHhcCCCC-cEEEEECCCC
Confidence 48999999999999986 4455554 488888763 332 3344 4444454443
No 294
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=20.88 E-value=39 Score=35.00 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=44.0
Q ss_pred eecceeeeeecc-CCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcc
Q 012653 116 TVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLI 167 (459)
Q Consensus 116 t~~Gk~~~ieV~-~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL 167 (459)
..+|....+.+. .+..+..+|.|++...+++ ++.|.+.+.|.-|.|.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~--~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIP--ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccc--hhheeeccCCcccCccccc
Confidence 567888888777 7889999999999999998 9999999999999887554
No 295
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=20.51 E-value=82 Score=26.99 Aligned_cols=32 Identities=22% Similarity=0.601 Sum_probs=24.7
Q ss_pred EEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 74 KLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 74 rLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
.|-|.|++|. .+.+|++| |..+..-.+++++.
T Consensus 3 ~LW~aGK~l~-~~k~l~dy-~GkNEKtKiivKl~ 34 (98)
T PF11069_consen 3 QLWWAGKELQ-RGKKLSDY-IGKNEKTKIIVKLQ 34 (98)
T ss_pred eEEecccccc-CCCcHHHh-cCCCcceeEEEEec
Confidence 4789999998 78999999 66666666666653
No 296
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=20.24 E-value=1.8e+02 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=15.3
Q ss_pred eeccCCChHHHHHHHHHHhc
Q 012653 124 FHVERGRNVGYVKQQIAKKG 143 (459)
Q Consensus 124 ieV~~~~TV~~LK~kI~~~~ 143 (459)
++++...||.++-+.|....
T Consensus 23 ~~~~~~~tV~dll~~L~~~~ 42 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL 42 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC
Confidence 44445679999999998776
No 297
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=20.13 E-value=2e+02 Score=23.34 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=35.3
Q ss_pred eecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 012653 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (459)
Q Consensus 116 t~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk 159 (459)
-.+|....+.+.+..||.++-.++.++.|+. ++.-.++.-|.
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~--~~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGIN--YAAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCC--hhHEEEEEecC
Confidence 3678888899999999999999999999988 67777776553
Done!