Query 012653
Match_columns 459
No_of_seqs 373 out of 2270
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 100.0 6.4E-32 2.2E-36 248.9 17.7 155 27-184 14-169 (172)
2 3rt3_B Ubiquitin-like protein 100.0 1.6E-31 5.5E-36 242.7 18.3 150 33-185 2-155 (159)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 2E-29 6.9E-34 225.7 18.7 149 34-185 1-150 (152)
4 2kdi_A Ubiquitin, vacuolar pro 99.7 4.9E-18 1.7E-22 146.6 5.4 103 31-134 7-113 (114)
5 4eew_A Large proline-rich prot 99.7 1.2E-16 4E-21 130.8 8.7 88 93-183 1-88 (88)
6 3phx_B Ubiquitin-like protein 99.7 2.5E-16 8.7E-21 126.1 9.5 77 31-108 2-79 (79)
7 3plu_A Ubiquitin-like modifier 99.6 3.4E-16 1.2E-20 129.9 8.5 78 102-181 14-91 (93)
8 1yx5_B Ubiquitin; proteasome, 99.6 4.6E-16 1.6E-20 130.1 9.1 91 34-125 1-92 (98)
9 3dbh_I NEDD8; cell cycle, acti 99.6 6.9E-16 2.4E-20 125.6 9.5 82 27-109 6-88 (88)
10 3phx_B Ubiquitin-like protein 99.6 7.5E-16 2.6E-20 123.3 9.2 76 107-184 2-77 (79)
11 3plu_A Ubiquitin-like modifier 99.6 7.9E-16 2.7E-20 127.8 8.5 74 30-104 18-92 (93)
12 3v6c_B Ubiquitin; structural g 99.6 1.3E-15 4.4E-20 125.6 9.7 78 29-107 13-91 (91)
13 4fbj_B NEDD8; effector-HOST ta 99.6 8.5E-16 2.9E-20 126.2 8.5 76 34-110 1-77 (88)
14 4hcn_B Polyubiquitin, ubiquiti 99.6 1.9E-15 6.4E-20 126.6 8.8 80 29-109 18-98 (98)
15 2faz_A Ubiquitin-like containi 99.6 2.6E-15 8.8E-20 119.8 8.9 76 108-185 1-78 (78)
16 2uyz_B Small ubiquitin-related 99.6 1.9E-15 6.4E-20 121.0 7.5 77 32-109 2-79 (79)
17 2kk8_A Uncharacterized protein 99.6 3.3E-15 1.1E-19 122.0 8.9 74 31-105 8-83 (84)
18 4dwf_A HLA-B-associated transc 99.6 4.9E-15 1.7E-19 121.6 9.8 77 31-109 3-80 (90)
19 2dzi_A Ubiquitin-like protein 99.6 6.6E-15 2.3E-19 117.8 10.3 77 29-106 3-80 (81)
20 4dwf_A HLA-B-associated transc 99.6 3.7E-15 1.3E-19 122.3 9.0 79 108-189 4-82 (90)
21 4fbj_B NEDD8; effector-HOST ta 99.6 3.3E-15 1.1E-19 122.7 8.5 75 110-186 1-75 (88)
22 2kk8_A Uncharacterized protein 99.6 2.7E-15 9.2E-20 122.5 7.8 74 108-183 9-83 (84)
23 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 6.6E-15 2.3E-19 119.8 10.1 80 30-110 4-84 (87)
24 2faz_A Ubiquitin-like containi 99.6 4.9E-15 1.7E-19 118.2 9.1 75 32-107 1-78 (78)
25 1ndd_A NEDD8, protein (ubiquit 99.6 4.7E-15 1.6E-19 116.8 8.5 75 34-109 1-76 (76)
26 3m62_B UV excision repair prot 99.6 3.4E-15 1.2E-19 127.1 8.2 79 110-190 2-80 (106)
27 2kan_A Uncharacterized protein 99.6 7.4E-15 2.5E-19 122.4 10.0 81 27-109 9-91 (94)
28 1wy8_A NP95-like ring finger p 99.6 8.5E-15 2.9E-19 119.8 10.2 80 30-110 4-86 (89)
29 2lxa_A Ubiquitin-like protein 99.6 3.8E-15 1.3E-19 122.7 7.3 74 110-185 2-79 (87)
30 2hj8_A Interferon-induced 17 k 99.6 3.6E-15 1.2E-19 122.4 7.1 78 31-109 2-80 (88)
31 3n3k_B Ubiquitin; hydrolase, p 99.6 4.7E-15 1.6E-19 119.8 7.7 77 32-109 2-79 (85)
32 1wyw_B Ubiquitin-like protein 99.6 4.4E-15 1.5E-19 124.3 7.7 79 30-109 18-97 (97)
33 3mtn_B UBA80, ubcep1, ubiquiti 99.6 7.7E-15 2.6E-19 118.4 8.9 77 32-109 2-79 (85)
34 4eew_A Large proline-rich prot 99.6 8.9E-15 3E-19 119.5 9.3 73 31-105 15-88 (88)
35 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 7.9E-15 2.7E-19 121.6 9.1 79 33-112 1-80 (96)
36 1uel_A HHR23B, UV excision rep 99.6 1.5E-14 5E-19 120.5 10.8 78 110-189 1-81 (95)
37 2wyq_A HHR23A, UV excision rep 99.6 1.1E-14 3.9E-19 117.8 9.7 77 107-185 3-82 (85)
38 3l0w_B Monoubiquitinated proli 99.6 8.6E-15 2.9E-19 134.7 10.1 83 34-117 1-84 (169)
39 3a9j_A Ubiquitin; protein comp 99.6 1.1E-14 3.6E-19 114.8 9.1 75 34-109 1-76 (76)
40 1v2y_A 3300001G02RIK protein; 99.6 3.1E-15 1.1E-19 127.4 6.4 80 30-109 4-99 (105)
41 1uh6_A Ubiquitin-like 5; beta- 99.6 4.6E-15 1.6E-19 125.1 7.0 71 109-181 28-98 (100)
42 4a20_A Ubiquitin-like protein 99.6 8.8E-15 3E-19 123.1 8.7 77 107-185 17-97 (98)
43 3v6c_B Ubiquitin; structural g 99.5 9.4E-15 3.2E-19 120.4 8.6 75 107-183 15-89 (91)
44 1sif_A Ubiquitin; hydrophobic 99.5 8.8E-15 3E-19 120.1 8.3 77 32-109 8-85 (88)
45 1uh6_A Ubiquitin-like 5; beta- 99.5 5.1E-15 1.7E-19 124.8 6.8 73 31-104 26-99 (100)
46 3m63_B Ubiquitin domain-contai 99.5 4.2E-15 1.4E-19 125.5 6.0 94 86-184 7-100 (101)
47 2l7r_A Ubiquitin-like protein 99.5 9.4E-15 3.2E-19 121.3 7.7 78 30-109 16-93 (93)
48 2uyz_B Small ubiquitin-related 99.5 1E-14 3.5E-19 116.6 7.7 74 109-184 3-76 (79)
49 1ndd_A NEDD8, protein (ubiquit 99.5 2E-14 7E-19 113.1 9.1 73 110-184 1-73 (76)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.5 2.9E-14 1E-18 123.4 10.6 80 107-186 14-101 (116)
51 3q3f_A Ribonuclease/ubiquitin 99.5 1E-14 3.5E-19 136.5 8.3 84 31-115 103-187 (189)
52 3vdz_A Ubiquitin-40S ribosomal 99.5 2.1E-14 7.2E-19 123.1 9.3 78 31-109 33-111 (111)
53 3dbh_I NEDD8; cell cycle, acti 99.5 1.2E-14 4.1E-19 118.2 7.4 75 108-184 11-85 (88)
54 2hj8_A Interferon-induced 17 k 99.5 9.7E-15 3.3E-19 119.8 6.8 77 108-186 3-79 (88)
55 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 2.6E-14 9.1E-19 118.4 9.5 76 109-186 1-76 (96)
56 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 3.1E-14 1.1E-18 115.8 9.7 75 108-184 6-80 (87)
57 3n3k_B Ubiquitin; hydrolase, p 99.5 2.6E-14 8.8E-19 115.4 8.9 75 109-185 3-77 (85)
58 1wyw_B Ubiquitin-like protein 99.5 1.8E-14 6.3E-19 120.5 8.0 76 107-184 19-94 (97)
59 1sif_A Ubiquitin; hydrophobic 99.5 2.5E-14 8.6E-19 117.4 8.6 76 108-185 8-83 (88)
60 3a9j_A Ubiquitin; protein comp 99.5 4.3E-14 1.5E-18 111.2 9.6 74 110-185 1-74 (76)
61 2wyq_A HHR23A, UV excision rep 99.5 4.7E-14 1.6E-18 114.1 9.9 75 31-106 3-81 (85)
62 1wy8_A NP95-like ring finger p 99.5 4.9E-14 1.7E-18 115.2 9.9 77 108-186 6-84 (89)
63 4hcn_B Polyubiquitin, ubiquiti 99.5 2.6E-14 8.7E-19 119.7 8.3 76 107-184 20-95 (98)
64 1ttn_A DC-UBP, dendritic cell- 99.5 2.9E-14 9.8E-19 121.2 8.6 82 26-108 16-98 (106)
65 2dzi_A Ubiquitin-like protein 99.5 3.2E-14 1.1E-18 113.8 8.3 75 108-184 6-80 (81)
66 2lxa_A Ubiquitin-like protein 99.5 1.3E-14 4.3E-19 119.6 5.7 72 34-106 2-78 (87)
67 3rt3_B Ubiquitin-like protein 99.5 4E-14 1.4E-18 127.9 9.6 79 31-110 79-158 (159)
68 3b1l_X E3 ubiquitin-protein li 99.2 1.6E-15 5.6E-20 120.2 0.0 74 34-108 1-75 (76)
69 1wgd_A Homocysteine-responsive 99.5 3.1E-14 1E-18 117.9 7.7 78 31-109 5-89 (93)
70 2bwf_A Ubiquitin-like protein 99.5 7.6E-14 2.6E-18 110.5 9.5 72 110-184 5-76 (77)
71 4a20_A Ubiquitin-like protein 99.5 4.5E-14 1.5E-18 118.8 8.6 76 30-106 16-96 (98)
72 3mtn_B UBA80, ubcep1, ubiquiti 99.5 5.3E-14 1.8E-18 113.4 8.6 75 109-185 3-77 (85)
73 4ajy_B Transcription elongatio 99.5 5.1E-14 1.7E-18 121.8 8.9 74 34-108 1-83 (118)
74 1j8c_A Ubiquitin-like protein 99.5 1.8E-13 6.3E-18 119.9 12.2 78 31-109 30-107 (125)
75 2kan_A Uncharacterized protein 99.5 7.1E-14 2.4E-18 116.4 9.0 78 106-186 12-90 (94)
76 1wgh_A Ubiquitin-like 3, HCG-1 99.5 1.2E-13 4.1E-18 119.6 10.6 78 29-107 12-100 (116)
77 1se9_A Ubiquitin family; ubiqu 99.5 5.9E-14 2E-18 122.9 8.7 84 102-185 9-104 (126)
78 2fnj_B Transcription elongatio 99.5 6.4E-14 2.2E-18 121.4 8.8 74 34-109 1-83 (118)
79 1ttn_A DC-UBP, dendritic cell- 99.5 6.5E-14 2.2E-18 119.0 8.6 79 107-187 21-99 (106)
80 3m62_B UV excision repair prot 99.5 3.3E-14 1.1E-18 121.0 6.6 73 34-107 2-75 (106)
81 2fnj_B Transcription elongatio 99.5 5.4E-14 1.8E-18 121.9 7.8 72 110-183 1-80 (118)
82 2bwf_A Ubiquitin-like protein 99.5 1.6E-13 5.5E-18 108.6 10.0 71 34-105 5-75 (77)
83 2ojr_A Ubiquitin; lanthide-bin 99.5 1.7E-13 5.6E-18 117.4 10.8 78 31-109 33-111 (111)
84 1yx5_B Ubiquitin; proteasome, 99.5 1.6E-13 5.3E-18 114.6 9.9 75 110-186 1-75 (98)
85 1yqb_A Ubiquilin 3; structural 99.5 1E-13 3.5E-18 116.7 8.8 79 29-109 18-97 (100)
86 1uel_A HHR23B, UV excision rep 99.5 1.3E-13 4.4E-18 114.7 9.3 73 34-107 1-77 (95)
87 2l7r_A Ubiquitin-like protein 99.5 6.9E-14 2.4E-18 116.1 7.6 75 106-184 16-90 (93)
88 4ajy_B Transcription elongatio 99.5 9.5E-14 3.3E-18 120.1 8.6 74 110-185 1-82 (118)
89 1se9_A Ubiquitin family; ubiqu 99.5 1.2E-13 4.1E-18 121.0 9.3 78 31-109 14-106 (126)
90 1wx8_A Riken cDNA 4931431F19; 99.5 6.4E-14 2.2E-18 116.4 7.2 78 31-109 15-92 (96)
91 1we6_A Splicing factor, putati 99.5 7.9E-14 2.7E-18 119.4 7.7 78 31-109 25-107 (111)
92 1v2y_A 3300001G02RIK protein; 99.5 3.5E-14 1.2E-18 120.9 5.3 78 109-188 7-100 (105)
93 1v5o_A 1700011N24RIK protein; 99.5 1.6E-13 5.4E-18 115.8 9.3 79 31-109 5-88 (102)
94 1wgd_A Homocysteine-responsive 99.5 1.2E-13 4.1E-18 114.3 8.2 76 108-185 6-87 (93)
95 3b1l_X E3 ubiquitin-protein li 99.2 5.4E-15 1.8E-19 117.2 0.0 74 110-185 1-74 (76)
96 1yqb_A Ubiquilin 3; structural 99.5 1.5E-13 5.2E-18 115.7 8.9 78 106-186 19-96 (100)
97 3vdz_A Ubiquitin-40S ribosomal 99.5 1.7E-13 5.9E-18 117.4 9.2 74 109-184 35-108 (111)
98 2klc_A Ubiquilin-1; ubiquitin- 99.4 3.2E-13 1.1E-17 113.8 10.4 78 30-108 22-99 (101)
99 2gow_A HCG-1 protein, ubiquiti 99.4 1.1E-13 3.9E-18 121.2 7.5 79 107-185 15-101 (125)
100 3l0w_B Monoubiquitinated proli 99.4 2.4E-13 8.1E-18 125.1 10.0 75 110-186 1-75 (169)
101 2klc_A Ubiquilin-1; ubiquitin- 99.4 2.6E-13 8.8E-18 114.4 9.4 77 107-186 23-99 (101)
102 1wju_A NEDD8 ultimate buster-1 99.4 1.6E-13 5.5E-18 115.7 7.9 65 119-185 29-93 (100)
103 2ojr_A Ubiquitin; lanthide-bin 99.4 3.7E-13 1.2E-17 115.3 10.2 75 108-184 34-108 (111)
104 3u30_A Ubiquitin, linear DI-ub 99.4 2.3E-13 8E-18 124.7 8.9 78 31-109 94-172 (172)
105 1wju_A NEDD8 ultimate buster-1 99.4 1.1E-13 3.9E-18 116.6 5.6 74 33-108 17-93 (100)
106 1wx7_A Ubiquilin 3; ubiquitin- 99.4 3E-13 1E-17 114.7 8.2 77 31-109 15-92 (106)
107 2gow_A HCG-1 protein, ubiquiti 99.4 3.3E-13 1.1E-17 118.3 8.6 77 31-108 15-102 (125)
108 1wx7_A Ubiquilin 3; ubiquitin- 99.4 4.4E-13 1.5E-17 113.7 9.1 78 107-187 15-92 (106)
109 1j8c_A Ubiquitin-like protein 99.4 4E-13 1.4E-17 117.7 9.0 76 108-186 31-106 (125)
110 1wia_A Hypothetical ubiquitin- 99.4 3.5E-13 1.2E-17 111.9 8.1 77 108-189 6-83 (95)
111 1we6_A Splicing factor, putati 99.4 2.5E-13 8.5E-18 116.2 7.4 76 107-184 25-104 (111)
112 1wx8_A Riken cDNA 4931431F19; 99.4 1.7E-13 6E-18 113.8 6.3 76 108-186 16-91 (96)
113 3u5e_m 60S ribosomal protein L 99.4 1.6E-14 5.6E-19 126.8 0.0 75 34-109 1-76 (128)
114 2kdi_A Ubiquitin, vacuolar pro 99.4 5.9E-13 2E-17 114.7 9.7 79 107-187 7-85 (114)
115 4dbg_A Ranbp-type and C3HC4-ty 99.4 6.7E-13 2.3E-17 112.8 9.6 75 30-105 21-99 (105)
116 1wgg_A Ubiquitin carboxyl-term 99.4 4.2E-13 1.4E-17 112.2 8.3 76 30-107 4-80 (96)
117 1v5o_A 1700011N24RIK protein; 99.4 4E-13 1.4E-17 113.3 7.8 78 108-187 6-88 (102)
118 1v5t_A 8430435I17RIK protein; 99.4 4.1E-13 1.4E-17 110.7 7.7 77 30-107 4-84 (90)
119 2kd0_A LRR repeats and ubiquit 99.4 1.1E-12 3.7E-17 107.2 10.0 75 30-105 9-83 (85)
120 2kdb_A Homocysteine-responsive 99.4 2.5E-13 8.4E-18 114.5 6.1 73 108-181 22-99 (99)
121 1wxv_A BAG-family molecular ch 99.4 1.1E-12 3.7E-17 108.2 9.5 77 30-106 4-85 (92)
122 1we7_A SF3A1 protein; structur 99.4 8.9E-13 3E-17 113.6 9.3 78 31-109 23-111 (115)
123 4dbg_A Ranbp-type and C3HC4-ty 99.4 1E-12 3.5E-17 111.7 9.3 73 110-184 25-100 (105)
124 3u5c_f 40S ribosomal protein S 99.4 3.4E-14 1.2E-18 128.7 0.0 75 34-109 1-76 (152)
125 1wia_A Hypothetical ubiquitin- 99.4 9.8E-13 3.4E-17 109.1 8.7 75 30-108 4-80 (95)
126 2kdb_A Homocysteine-responsive 99.4 3.9E-13 1.3E-17 113.2 6.2 73 30-103 20-99 (99)
127 3b08_A Polyubiquitin-C, ubiqui 99.4 1.4E-12 4.9E-17 115.9 10.2 78 31-109 74-152 (152)
128 1x1m_A Ubiquitin-like protein 99.4 1.3E-12 4.6E-17 111.1 9.4 76 109-186 12-102 (107)
129 3q3f_A Ribonuclease/ubiquitin 99.4 5.6E-13 1.9E-17 124.7 7.6 76 109-186 105-180 (189)
130 2dzm_A FAS-associated factor 1 99.4 8.4E-13 2.9E-17 111.4 7.5 75 30-106 5-82 (100)
131 3u5e_m 60S ribosomal protein L 99.4 6.6E-14 2.3E-18 122.9 0.0 74 110-185 1-74 (128)
132 2kd0_A LRR repeats and ubiquit 99.4 2E-12 6.9E-17 105.5 8.8 71 111-183 13-83 (85)
133 1we7_A SF3A1 protein; structur 99.3 2.5E-12 8.5E-17 110.7 9.5 66 117-184 43-108 (115)
134 1v86_A DNA segment, CHR 7, way 99.3 1.4E-12 4.8E-17 108.7 7.6 75 30-106 14-88 (95)
135 1wgg_A Ubiquitin carboxyl-term 99.3 1.6E-12 5.3E-17 108.7 7.6 82 108-194 6-88 (96)
136 3m63_B Ubiquitin domain-contai 99.3 4.6E-13 1.6E-17 113.0 4.2 72 33-105 28-99 (101)
137 1v5t_A 8430435I17RIK protein; 99.3 3.6E-12 1.2E-16 105.1 8.7 75 108-185 6-84 (90)
138 2kjr_A CG11242; UBL, ubiquitin 99.3 6.7E-12 2.3E-16 104.8 10.3 77 27-103 9-93 (95)
139 3u5c_f 40S ribosomal protein S 99.3 1.6E-13 5.4E-18 124.2 0.0 72 110-183 1-72 (152)
140 1wxv_A BAG-family molecular ch 99.3 6.3E-12 2.2E-16 103.6 8.1 76 108-186 6-87 (92)
141 1x1m_A Ubiquitin-like protein 99.3 4.1E-12 1.4E-16 108.1 7.0 76 31-107 10-101 (107)
142 2kj6_A Tubulin folding cofacto 99.3 1E-11 3.6E-16 104.1 8.8 75 30-104 11-94 (97)
143 2xzm_9 RPS31E; ribosome, trans 99.3 3.9E-13 1.3E-17 125.4 0.0 71 34-110 1-72 (189)
144 2daf_A FLJ35834 protein; hypot 99.3 1.3E-11 4.6E-16 106.2 9.2 88 30-118 12-101 (118)
145 2dzm_A FAS-associated factor 1 99.3 5.3E-12 1.8E-16 106.5 6.2 75 109-186 8-84 (100)
146 4b6w_A Tubulin-specific chaper 99.3 8.8E-12 3E-16 102.3 7.1 71 34-105 3-83 (86)
147 3ai5_A Yeast enhanced green fl 99.2 1.1E-11 3.9E-16 123.7 9.2 77 30-107 230-307 (307)
148 4b6w_A Tubulin-specific chaper 99.2 7.9E-12 2.7E-16 102.5 6.6 67 117-185 12-85 (86)
149 2dzj_A Synaptic glycoprotein S 99.2 1E-11 3.6E-16 102.2 7.0 71 31-102 8-85 (88)
150 2dzj_A Synaptic glycoprotein S 99.2 6.6E-12 2.3E-16 103.4 4.9 70 109-180 10-85 (88)
151 2kjr_A CG11242; UBL, ubiquitin 99.2 2.5E-11 8.4E-16 101.4 8.1 73 107-181 13-93 (95)
152 2daf_A FLJ35834 protein; hypot 99.2 2.7E-11 9.2E-16 104.4 8.2 74 110-185 16-90 (118)
153 3ai5_A Yeast enhanced green fl 99.2 2.4E-11 8.1E-16 121.4 8.5 76 106-183 230-305 (307)
154 1v86_A DNA segment, CHR 7, way 99.2 8.8E-12 3E-16 103.8 4.6 72 109-184 17-88 (95)
155 2xzm_9 RPS31E; ribosome, trans 99.2 1.9E-12 6.5E-17 120.8 0.0 67 110-183 1-67 (189)
156 1oqy_A HHR23A, UV excision rep 99.2 2E-11 6.8E-16 125.0 7.3 79 29-108 3-86 (368)
157 1oqy_A HHR23A, UV excision rep 99.2 2.9E-11 9.9E-16 123.8 8.4 74 108-183 6-83 (368)
158 1wf9_A NPL4 family protein; be 99.2 3.1E-11 1E-15 102.8 6.4 74 31-105 5-94 (107)
159 1v6e_A Cytoskeleton-associated 99.2 7.6E-11 2.6E-15 98.0 8.5 72 33-104 7-86 (95)
160 1t0y_A Tubulin folding cofacto 99.2 9.3E-11 3.2E-15 102.1 9.4 74 31-104 4-85 (122)
161 2io1_B Small ubiquitin-related 99.1 7.7E-11 2.6E-15 98.2 8.1 79 30-109 4-83 (94)
162 2kj6_A Tubulin folding cofacto 99.1 8E-11 2.7E-15 98.7 6.6 72 110-183 15-95 (97)
163 1wf9_A NPL4 family protein; be 99.1 5.6E-11 1.9E-15 101.1 4.4 73 110-185 8-96 (107)
164 2io1_B Small ubiquitin-related 99.0 4.3E-10 1.5E-14 93.7 8.3 76 108-185 6-81 (94)
165 1v6e_A Cytoskeleton-associated 99.0 3.1E-10 1.1E-14 94.3 6.8 73 110-184 8-88 (95)
166 1t0y_A Tubulin folding cofacto 99.0 8.9E-10 3E-14 95.9 8.0 76 108-185 5-88 (122)
167 2io0_B Small ubiquitin-related 99.0 1.2E-09 4.1E-14 90.5 8.3 78 31-109 3-81 (91)
168 3shq_A UBLCP1; phosphatase, hy 99.0 6.1E-10 2.1E-14 112.1 7.3 77 31-108 3-82 (320)
169 2d07_B Ubiquitin-like protein 98.9 2.3E-09 7.7E-14 89.1 8.6 79 30-109 14-93 (93)
170 2kzr_A Ubiquitin thioesterase 98.9 1.1E-09 3.6E-14 89.3 5.8 71 110-183 1-77 (86)
171 2io0_B Small ubiquitin-related 98.9 3.5E-09 1.2E-13 87.7 8.9 77 108-186 4-80 (91)
172 1wm3_A Ubiquitin-like protein 98.9 2.5E-09 8.7E-14 84.4 7.7 70 110-181 2-71 (72)
173 2eke_C Ubiquitin-like protein 98.9 5.4E-09 1.8E-13 88.9 10.2 82 26-109 24-106 (106)
174 3a4r_A Nfatc2-interacting prot 98.9 3.8E-09 1.3E-13 85.0 8.7 75 28-103 2-78 (79)
175 1wm3_A Ubiquitin-like protein 98.9 3.7E-09 1.3E-13 83.5 7.9 70 33-103 1-71 (72)
176 2kzr_A Ubiquitin thioesterase 98.9 1.2E-09 4E-14 89.0 5.1 71 34-105 1-77 (86)
177 1wz0_A Ubiquitin-like protein 98.9 3.1E-09 1.1E-13 90.1 7.8 79 30-109 21-100 (104)
178 2k8h_A Small ubiquitin protein 98.9 4.7E-09 1.6E-13 89.9 7.9 80 30-110 23-103 (110)
179 3a4r_A Nfatc2-interacting prot 98.8 7.7E-09 2.6E-13 83.2 8.2 73 107-181 5-78 (79)
180 2d07_B Ubiquitin-like protein 98.8 1E-08 3.5E-13 85.1 8.3 76 107-184 15-90 (93)
181 1wjn_A Tubulin-folding protein 98.8 9.1E-09 3.1E-13 85.6 7.7 75 31-105 7-92 (97)
182 3shq_A UBLCP1; phosphatase, hy 98.8 3.3E-09 1.1E-13 106.8 5.8 76 109-187 5-83 (320)
183 2eke_C Ubiquitin-like protein 98.7 2.1E-08 7.2E-13 85.3 8.2 75 107-184 29-103 (106)
184 1wz0_A Ubiquitin-like protein 98.7 1.1E-08 3.7E-13 86.8 5.6 77 107-185 22-98 (104)
185 2k8h_A Small ubiquitin protein 98.7 1.4E-08 4.6E-13 87.0 5.1 78 107-186 24-101 (110)
186 1wjn_A Tubulin-folding protein 98.6 7E-08 2.4E-12 80.2 8.0 73 110-184 10-93 (97)
187 3pge_A SUMO-modified prolifera 98.3 2.3E-06 8E-11 80.3 9.8 79 30-109 26-104 (200)
188 3kyd_D Small ubiquitin-related 98.3 2.6E-06 8.9E-11 73.3 9.0 75 108-184 39-113 (115)
189 3kyd_D Small ubiquitin-related 98.2 3E-06 1E-10 72.9 8.2 74 31-105 38-112 (115)
190 3tix_A Ubiquitin-like protein 98.2 2.7E-06 9.2E-11 79.1 7.8 79 31-110 55-133 (207)
191 3pge_A SUMO-modified prolifera 98.0 2E-05 6.7E-10 74.1 8.6 77 107-186 27-103 (200)
192 3v7o_A Minor nucleoprotein VP3 97.9 1.7E-06 5.8E-11 81.4 -0.1 82 28-110 16-97 (227)
193 1cja_A Protein (actin-fragmin 97.9 5.6E-06 1.9E-10 83.3 3.6 137 274-457 76-237 (342)
194 3tix_A Ubiquitin-like protein 97.8 2.4E-05 8.3E-10 72.7 6.7 78 107-187 55-132 (207)
195 4efo_A Serine/threonine-protei 97.8 3.6E-05 1.2E-09 63.8 6.4 60 34-93 13-75 (94)
196 2pjh_A Protein NPL4, nuclear p 97.7 1.8E-05 6.2E-10 63.6 3.8 70 108-180 3-77 (80)
197 2pjh_A Protein NPL4, nuclear p 97.7 2.2E-05 7.7E-10 63.1 4.0 71 32-103 3-78 (80)
198 3ivf_A Talin-1; FERM domain, c 97.6 0.0025 8.7E-08 64.6 18.1 120 33-157 3-132 (371)
199 4efo_A Serine/threonine-protei 97.5 0.00024 8.1E-09 58.9 7.9 64 117-182 21-87 (94)
200 3goe_A DNA repair protein RAD6 97.5 0.0004 1.4E-08 55.3 8.6 71 110-182 10-81 (82)
201 3uf8_A Ubiquitin-like protein 97.5 0.00038 1.3E-08 65.6 9.9 97 26-124 14-110 (209)
202 3v7o_A Minor nucleoprotein VP3 97.5 1.8E-05 6.1E-10 74.5 0.0 80 105-187 17-96 (227)
203 3goe_A DNA repair protein RAD6 97.3 0.00086 2.9E-08 53.4 8.5 70 34-104 10-81 (82)
204 2jxx_A Nfatc2-interacting prot 97.2 0.00096 3.3E-08 55.6 8.1 72 108-181 24-96 (97)
205 3ix6_A TS, tsase, thymidylate 97.2 4.4E-05 1.5E-09 77.6 -0.5 85 30-115 18-102 (360)
206 3uf8_A Ubiquitin-like protein 97.2 0.0015 5E-08 61.6 9.6 82 103-187 15-96 (209)
207 2jxx_A Nfatc2-interacting prot 97.2 0.0016 5.3E-08 54.3 8.5 73 30-103 22-96 (97)
208 2l76_A Nfatc2-interacting prot 97.0 0.0049 1.7E-07 50.9 9.7 76 28-104 16-91 (95)
209 2al3_A TUG long isoform; TUG U 96.9 0.0031 1.1E-07 51.6 7.9 76 107-184 7-82 (90)
210 2l76_A Nfatc2-interacting prot 96.8 0.005 1.7E-07 50.9 8.2 73 110-185 22-94 (95)
211 4da1_A Protein phosphatase 1K, 96.6 0.0003 1E-08 72.1 0.0 85 30-115 27-111 (389)
212 3ix6_A TS, tsase, thymidylate 96.6 0.00036 1.2E-08 70.9 0.0 81 104-187 16-96 (360)
213 2al3_A TUG long isoform; TUG U 96.6 0.0035 1.2E-07 51.4 5.8 75 31-106 7-82 (90)
214 2kc2_A Talin-1, F1; FERM, adhe 96.4 0.0029 9.9E-08 55.2 4.6 70 111-181 13-120 (128)
215 3akj_A CTKA; protein kinase, t 96.3 0.00065 2.2E-08 68.2 -0.3 45 413-457 139-185 (325)
216 2bps_A YUKD protein; ubiquitin 95.9 0.018 6.3E-07 46.2 6.5 70 32-102 3-80 (81)
217 4da1_A Protein phosphatase 1K, 95.7 0.0017 5.7E-08 66.5 0.0 78 107-187 28-105 (389)
218 2kc2_A Talin-1, F1; FERM, adhe 95.5 0.0097 3.3E-07 51.9 4.0 70 35-105 13-122 (128)
219 2bps_A YUKD protein; ubiquitin 95.1 0.043 1.5E-06 44.0 6.4 64 117-180 14-80 (81)
220 2r2o_A Plexin-B1; effector dom 94.1 0.13 4.4E-06 45.2 7.4 79 30-108 21-131 (138)
221 2dzk_A UBX domain-containing p 94.0 0.27 9.2E-06 41.3 9.1 79 26-104 6-89 (109)
222 3qx1_A FAS-associated factor 1 93.5 0.28 9.6E-06 39.0 7.9 74 30-104 4-82 (84)
223 4e71_A Plexin-B2, MM1; transme 93.3 0.18 6.1E-06 42.8 6.6 75 31-105 9-110 (111)
224 3qx1_A FAS-associated factor 1 92.9 0.22 7.5E-06 39.6 6.3 69 110-181 8-81 (84)
225 4e71_A Plexin-B2, MM1; transme 91.6 0.57 2E-05 39.7 7.5 64 119-182 23-109 (111)
226 1wj4_A KIAA0794 protein; UBX d 91.0 0.85 2.9E-05 39.1 8.3 73 30-103 40-117 (124)
227 4a3p_A Ubiquitin carboxyl-term 90.5 1.1 3.7E-05 42.0 9.3 66 44-109 141-212 (217)
228 3jyu_A Ubiquitin carboxyl-term 90.2 0.86 2.9E-05 43.2 8.4 66 44-109 153-224 (231)
229 3h6n_A Plexin-D1; structural g 90.1 1.1 3.6E-05 38.8 8.0 68 118-185 15-106 (127)
230 2cr5_A Reproduction 8; UBX dom 89.9 0.94 3.2E-05 37.8 7.5 80 24-104 14-97 (109)
231 2r2o_A Plexin-B1; effector dom 89.5 1 3.5E-05 39.5 7.5 67 120-186 41-131 (138)
232 2dzk_A UBX domain-containing p 89.3 0.84 2.9E-05 38.2 6.7 71 110-182 14-89 (109)
233 1wj4_A KIAA0794 protein; UBX d 89.2 0.79 2.7E-05 39.4 6.6 72 108-182 42-118 (124)
234 4e74_A Plexin-A4; RBD, structu 88.9 1.1 3.9E-05 38.2 7.2 76 31-106 11-115 (117)
235 3h6n_A Plexin-D1; structural g 88.7 1.3 4.4E-05 38.3 7.5 66 42-107 16-106 (127)
236 4e74_A Plexin-A4; RBD, structu 88.2 1.2 4E-05 38.1 6.9 66 119-184 26-115 (117)
237 2daj_A KIAA0977 protein, COBL- 88.0 1.5 5E-05 35.4 6.8 66 30-96 7-76 (91)
238 3ls8_A Phosphatidylinositol 3- 87.7 0.25 8.5E-06 53.5 3.0 39 414-456 463-501 (614)
239 3ivf_A Talin-1; FERM domain, c 87.6 1.6 5.5E-05 43.7 8.8 63 119-181 12-82 (371)
240 2ylm_A Ubiquitin carboxyl-term 87.3 3 0.0001 44.2 11.0 115 31-146 337-477 (530)
241 2juo_A GA-binding protein alph 86.2 2.1 7.1E-05 34.4 6.8 60 122-183 5-64 (89)
242 1oey_A P67-PHOX, neutrophil cy 85.4 2.3 7.8E-05 34.1 6.7 50 30-80 2-51 (83)
243 2x6h_A GH13170P, VPS34, phosph 84.5 0.46 1.6E-05 52.2 3.1 39 414-456 537-575 (696)
244 1s3s_G P47 protein; AAA ATPase 84.3 2.3 7.9E-05 36.5 6.9 69 109-179 52-124 (127)
245 1ryj_A Unknown; beta/alpha pro 83.7 8.7 0.0003 29.1 9.3 67 32-108 3-69 (70)
246 3jyu_A Ubiquitin carboxyl-term 83.6 4.1 0.00014 38.4 8.9 62 121-184 153-221 (231)
247 1s3s_G P47 protein; AAA ATPase 83.0 1.8 6.1E-05 37.2 5.6 70 31-100 50-123 (127)
248 2juo_A GA-binding protein alph 82.6 2.5 8.7E-05 33.9 5.8 62 44-106 4-65 (89)
249 3hhm_A Phosphatidylinositol-4, 81.8 0.68 2.3E-05 53.2 3.2 38 415-456 924-961 (1091)
250 2cr5_A Reproduction 8; UBX dom 81.2 2.6 9E-05 35.0 5.9 71 109-182 23-97 (109)
251 4a3p_A Ubiquitin carboxyl-term 80.8 4.3 0.00015 37.9 7.8 62 121-184 141-209 (217)
252 2wxf_A Phosphatidylinositol-4, 80.5 0.68 2.3E-05 52.6 2.5 73 32-105 84-173 (940)
253 2ylm_A Ubiquitin carboxyl-term 80.3 11 0.00036 40.0 11.6 124 30-155 127-286 (530)
254 1e7u_A Phosphatidylinositol 3- 79.5 0.76 2.6E-05 52.3 2.5 74 31-105 76-167 (961)
255 2y3a_A Phosphatidylinositol-4, 79.5 0.87 3E-05 52.4 3.0 37 416-456 928-964 (1092)
256 2l32_A Small archaeal modifier 79.2 4.4 0.00015 31.4 6.2 65 34-109 1-66 (74)
257 3hm6_X Plexin-B1; structural g 79.0 7.2 0.00025 42.0 9.6 80 30-109 254-365 (644)
258 3kuz_A Plexin-C1; structural g 78.3 6 0.00021 34.1 7.2 62 120-181 39-124 (126)
259 3ig3_A Plxna3 protein; plexin 77.8 9.7 0.00033 40.9 10.2 80 30-109 230-338 (627)
260 3kuz_A Plexin-C1; structural g 76.7 4.6 0.00016 34.8 5.9 73 31-103 17-124 (126)
261 1vd2_A Protein kinase C, IOTA 75.6 14 0.00047 29.9 8.3 51 30-80 3-54 (89)
262 2daj_A KIAA0977 protein, COBL- 72.9 8.7 0.0003 30.9 6.3 61 112-174 13-76 (91)
263 1vjk_A Molybdopterin convertin 71.4 19 0.00064 28.9 8.3 72 31-108 7-97 (98)
264 1oey_A P67-PHOX, neutrophil cy 68.3 7.3 0.00025 31.1 5.0 45 113-159 7-51 (83)
265 1h4r_A Merlin; FERM, neurofibr 68.1 16 0.00056 35.3 8.6 74 108-183 21-98 (314)
266 1ef1_A Moesin; membrane, FERM 66.7 14 0.00049 35.3 7.8 72 110-183 2-78 (294)
267 2kvr_A Ubiquitin carboxyl-term 65.1 5.8 0.0002 34.2 4.1 33 45-77 58-90 (130)
268 1ryj_A Unknown; beta/alpha pro 65.0 40 0.0014 25.3 8.5 61 109-181 4-64 (70)
269 1tyg_B YJBS; alpha beta barrel 63.9 14 0.00048 29.6 5.9 68 31-108 18-86 (87)
270 2cu3_A Unknown function protei 61.7 24 0.00081 26.0 6.5 62 38-108 2-63 (64)
271 1ip9_A BEM1 protein; ubiquitin 58.9 39 0.0013 27.0 7.5 44 32-77 11-54 (85)
272 3tpd_A Serine/threonine-protei 58.5 1.3 4.6E-05 45.6 -1.4 38 413-450 293-330 (440)
273 4eut_A Serine/threonine-protei 57.9 20 0.00067 35.4 7.2 52 41-92 320-372 (396)
274 1vjk_A Molybdopterin convertin 54.6 46 0.0016 26.5 7.7 69 108-181 8-92 (98)
275 2kmc_A Fermitin family homolog 53.8 61 0.0021 26.7 8.0 73 110-182 20-98 (102)
276 3hm6_X Plexin-B1; structural g 53.7 33 0.0011 37.0 8.2 65 120-184 274-362 (644)
277 3ig3_A Plxna3 protein; plexin 53.5 32 0.0011 37.0 8.0 67 119-185 246-336 (627)
278 2i1j_A Moesin; FERM, coiled-co 52.8 29 0.001 37.0 7.8 72 110-183 5-81 (575)
279 2l32_A Small archaeal modifier 52.1 20 0.00067 27.7 4.7 60 110-181 1-60 (74)
280 3rpf_C Molybdopterin convertin 51.7 31 0.0011 26.1 5.8 58 46-109 15-74 (74)
281 2kmm_A Guanosine-3',5'-BIS(dip 48.6 29 0.00098 25.7 5.2 66 110-186 1-66 (73)
282 3qij_A Protein 4.1; cytoskelet 48.2 36 0.0012 32.8 7.1 63 108-171 16-83 (296)
283 2kvr_A Ubiquitin carboxyl-term 47.9 12 0.00042 32.1 3.2 33 122-156 58-90 (130)
284 2kl0_A Putative thiamin biosyn 45.9 26 0.0009 26.8 4.5 63 38-109 3-65 (73)
285 1wgk_A Riken cDNA 2900073H19 p 44.4 1E+02 0.0034 25.6 8.3 76 31-109 9-108 (114)
286 1q1o_A Cell division control p 44.1 37 0.0013 27.8 5.4 38 32-69 4-49 (98)
287 2kmc_A Fermitin family homolog 43.6 95 0.0032 25.6 7.6 72 33-104 19-98 (102)
288 2k5p_A THis protein, thiamine- 42.2 37 0.0013 26.3 5.0 66 38-109 3-69 (78)
289 3dwg_C 9.5 kDa culture filtrat 40.2 75 0.0026 24.8 6.7 61 46-109 20-93 (93)
290 3po0_A Small archaeal modifier 38.2 87 0.003 24.1 6.7 60 43-108 18-88 (89)
291 1wgr_A Growth factor receptor- 37.6 68 0.0023 26.3 6.1 44 30-73 6-50 (100)
292 1vd2_A Protein kinase C, IOTA 37.5 58 0.002 26.2 5.5 48 112-160 7-55 (89)
293 3qa8_A MGC80376 protein; kinas 37.2 25 0.00087 38.3 4.4 51 41-92 320-371 (676)
294 1ef1_A Moesin; membrane, FERM 37.1 1.9E+02 0.0064 27.2 10.2 67 33-101 1-74 (294)
295 1h4r_A Merlin; FERM, neurofibr 36.6 1.2E+02 0.0042 28.9 8.9 71 31-103 20-96 (314)
296 3rpf_C Molybdopterin convertin 36.5 90 0.0031 23.3 6.3 53 124-181 16-68 (74)
297 1f0z_A THis protein; ubiquitin 36.3 60 0.002 23.8 5.2 63 38-108 3-65 (66)
298 4eut_A Serine/threonine-protei 35.3 65 0.0022 31.6 6.8 60 119-180 321-383 (396)
299 3po0_A Small archaeal modifier 34.1 1.5E+02 0.0052 22.7 7.5 57 120-181 18-83 (89)
300 2qjl_A URM1, ubiquitin-related 32.1 1.9E+02 0.0064 22.9 8.9 62 43-108 20-98 (99)
301 1t3q_A Quinoline 2-oxidoreduct 29.4 63 0.0022 28.6 5.0 31 31-61 7-37 (168)
302 2cu1_A Mitogen-activated prote 27.1 2E+02 0.0069 23.6 7.1 51 29-82 4-54 (103)
303 1tyg_B YJBS; alpha beta barrel 26.3 1.8E+02 0.0062 22.9 6.6 63 108-182 19-82 (87)
304 2cu3_A Unknown function protei 25.7 1.9E+02 0.0065 20.9 6.6 55 117-181 4-58 (64)
305 2lgx_A Fermitin family homolog 25.3 60 0.0021 27.1 3.7 71 110-181 27-100 (112)
306 3qij_A Protein 4.1; cytoskelet 24.0 1.4E+02 0.0047 28.6 6.7 62 31-93 15-83 (296)
307 2i1j_A Moesin; FERM, coiled-co 23.5 2.4E+02 0.0082 29.9 9.0 69 31-101 2-77 (575)
308 3hvz_A Uncharacterized protein 22.4 1.5E+02 0.0051 22.9 5.3 62 111-183 7-68 (78)
309 1wgr_A Growth factor receptor- 22.2 1E+02 0.0034 25.3 4.5 60 110-170 10-75 (100)
310 2g1e_A Hypothetical protein TA 21.8 2.4E+02 0.0083 21.3 6.6 60 47-108 19-89 (90)
311 3dwg_C 9.5 kDa culture filtrat 21.3 2.8E+02 0.0097 21.3 8.0 57 123-181 20-87 (93)
312 2q5w_D Molybdopterin convertin 20.6 94 0.0032 23.1 3.8 59 43-108 16-76 (77)
313 1fm0_D Molybdopterin convertin 20.3 1.3E+02 0.0045 22.4 4.7 59 43-108 17-80 (81)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.98 E-value=6.4e-32 Score=248.94 Aligned_cols=155 Identities=33% Similarity=0.503 Sum_probs=145.4
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 27 ~~~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
++.....|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |+.+|++|+|.++++|+|+++
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeeec
Confidence 334588999999 789999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred cccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
+.++|+|+|++.+|+++.++|++++||.+||++|+.++|+| +++|+|+|+|++|+|+++|.+|+|+++++|||++|.
T Consensus 93 ~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC--
T ss_pred ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEec
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999998873
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.98 E-value=1.6e-31 Score=242.72 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=144.4
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE-E-cCeecccCCccccccCcccccceeeeee-ccc
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F-EGRELARSNSRVRDYGLADGNVLHLVLR-LSD 108 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv-f-~Gk~L~~D~~tL~dygI~~gstl~Lvlr-Lsd 108 (459)
.|+|+| +++|++++++|++++||.+||.+|++++|+|+++|+|+ | +|+.|. |+.+|++|+|.+++++||+++ +++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccCCCC
Confidence 489999 78999999999999999999999999999999999999 9 799997 999999999999999999999 699
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.|+|+|++.+|+++.++|++++||++||++|++++|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|..
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecC
Confidence 99999999999999999999999999999999999998 9999999999999999999999999999999998843
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.97 E-value=2e-29 Score=225.69 Aligned_cols=149 Identities=34% Similarity=0.537 Sum_probs=144.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccccce
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~I 112 (459)
|+|+| +.+|++++++|.+++||++||.+|+++.|+|++.|+|+|.|+.|. |+.+|++|+|.+++++|++.+..+.|+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEeecccccce
Confidence 89999 678999999999999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred eeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 113 ~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+.+|++|+++++++|+|++|..
T Consensus 80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 9999999999999999999999999999999998 9999999999999999999999999999999998754
No 4
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.9e-18 Score=146.64 Aligned_cols=103 Identities=30% Similarity=0.488 Sum_probs=97.9
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
....+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 56789999 899999999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred cceeee---eecceeeeeeccCCChHHH
Q 012653 110 QAITVT---TVCGKVFEFHVERGRNVGY 134 (459)
Q Consensus 110 m~I~Vk---t~~Gk~~~ieV~~~~TV~~ 134 (459)
++++++ +.+|++++++|++++||+.
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ceeeccccccccCceEEEEeccccccCC
Confidence 999999 7789999999999999863
No 5
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=130.81 Aligned_cols=88 Identities=25% Similarity=0.282 Sum_probs=71.9
Q ss_pred CcccccceeeeeecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC
Q 012653 93 GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172 (459)
Q Consensus 93 gI~~gstl~LvlrLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I 172 (459)
|...++++++.++.+..|+|+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+.+|++|++
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i 78 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV 78 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCcHHHcCC
Confidence 345678899999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred CCCCEEEEEEe
Q 012653 173 RNEAVIHLLVR 183 (459)
Q Consensus 173 ~~~svI~L~vr 183 (459)
++++|||++|
T Consensus 79 -~g~~i~lv~R 88 (88)
T 4eew_A 79 -GGKVIHLVER 88 (88)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEC
Confidence 8999999876
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=126.08 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=72.7
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
+..|+|+| +++|+++.++|.+++||.+||.+|++++|+|++.|+|+|+|+.|. |+.+|++|+|+++++|||++++.|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCC
Confidence 35799999 779999999999999999999999999999999999999999998 899999999999999999999864
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.64 E-value=3.4e-16 Score=129.94 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=70.3
Q ss_pred eeeecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 102 LvlrLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|+...+..|+|+|++.+|+++.++|++++||++||++|++++|+| +++|+|+|+|++|+|+.+|+||+|+++++|+|.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 555667779999999999999999999999999999999999999 999999999999999999999999999999985
No 8
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=4.6e-16 Score=130.05 Aligned_cols=91 Identities=31% Similarity=0.509 Sum_probs=72.8
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccccce
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~I 112 (459)
|+|+| +.+|+++.++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||.++++|+|+.++.++.++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 89999 678999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred eeeeecceeeeee
Q 012653 113 TVTTVCGKVFEFH 125 (459)
Q Consensus 113 ~Vkt~~Gk~~~ie 125 (459)
+.+|.+|+.-.++
T Consensus 80 ~~~~v~~~~~~~~ 92 (98)
T 1yx5_B 80 NSSSVDKLAAALE 92 (98)
T ss_dssp -------------
T ss_pred ccccCCCchhhhh
Confidence 9999998876554
No 9
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.63 E-value=6.9e-16 Score=125.65 Aligned_cols=82 Identities=29% Similarity=0.526 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 27 ~~~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
++.+...|+|+| +++|+++.++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|+|+++++|||+++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 344678999999 679999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred cccc
Q 012653 106 LSDL 109 (459)
Q Consensus 106 Lsd~ 109 (459)
+.++
T Consensus 85 l~GG 88 (88)
T 3dbh_I 85 LRGG 88 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 10
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=123.32 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=72.2
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
+..|+|+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 3569999999999999999999999999999999999998 999999999999999999999999999999999873
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.62 E-value=7.9e-16 Score=127.77 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=69.4
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+.-|+|+| ++.|++++++|+|+|||.+||++|+++.|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|..
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEEe
Confidence 478899999 789999999999999999999999999999999999999999998 99999999999999999863
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.62 E-value=1.3e-15 Score=125.63 Aligned_cols=78 Identities=36% Similarity=0.637 Sum_probs=73.9
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 29 ~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
.+...|+|+| +++|+++.++|.+++||.+||.+|++++|++++.|+|+|+|+.|. |+.+|++|||++|++|+|++|++
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEecC
Confidence 3588999999 689999999999999999999999999999999999999999998 89999999999999999999874
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.62 E-value=8.5e-16 Score=126.24 Aligned_cols=76 Identities=28% Similarity=0.544 Sum_probs=71.2
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (459)
|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999 789999999999999999999999999999999999999999998 89999999999999999999998875
No 14
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.9e-15 Score=126.63 Aligned_cols=80 Identities=34% Similarity=0.595 Sum_probs=73.2
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 29 ~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
..+..|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.
T Consensus 18 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp ----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecC
Confidence 3588999999 689999999999999999999999999999999999999999997 89999999999999999999987
Q ss_pred cc
Q 012653 108 DL 109 (459)
Q Consensus 108 d~ 109 (459)
++
T Consensus 97 GG 98 (98)
T 4hcn_B 97 GG 98 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 15
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.6e-15 Score=119.78 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=71.4
Q ss_pred cccceeeeeecceee-eee-ccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 108 DLQAITVTTVCGKVF-EFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~ie-V~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
+.|+|+|++.+|+++ .++ |++++||++||++|+++.|+| +++|+|+|+|+.|+|+++|++|+++++++|+|++|.+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 469999999999995 899 999999999999999999998 9999999999999999999999999999999998753
No 16
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.59 E-value=1.9e-15 Score=121.01 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 32 ~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
+.|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|++|. |+.+|++|+|+++++||+++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4699999 789999999999999999999999999999999999999999998 8999999999999999999998764
No 17
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=3.3e-15 Score=122.02 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=70.9
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCee-cccCCccccccCcccccceeeeee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
..-|+|+| +++|++++++|++++||++||.+|++++|+|+++|+|+|+|++ |+ |+.+|++|+|+++++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEc
Confidence 56799999 8999999999999999999999999999999999999999999 97 899999999999999999876
No 18
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.58 E-value=4.9e-15 Score=121.58 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=72.1
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
+..|+|+| +++|+++.++|.+++||.+||.+|++++|+++++|+|+|+|+.|. |+.+|.+|+| ++++|||++++...
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEecCCCC
Confidence 56899999 789999999999999999999999999999999999999999998 8999999999 89999999987643
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.6e-15 Score=117.83 Aligned_cols=77 Identities=22% Similarity=0.438 Sum_probs=72.7
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 29 ~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
.+...|+|+| +.+|+++.++|.+++||++||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||.+|++||+++++
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 3578899999 678999999999999999999999999999999999999999997 8999999999999999999876
No 20
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.58 E-value=3.7e-15 Score=122.30 Aligned_cols=79 Identities=27% Similarity=0.293 Sum_probs=72.4
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCCc
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~k 187 (459)
..|+|+|++.+|+++.++|++++||.+||++|+++++++ +++|+|+|+|+.|+|+++|.+|+| ++++|||+++.+..
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 458999999999999999999999999999999999998 999999999999999999999999 89999999986654
Q ss_pred cc
Q 012653 188 VR 189 (459)
Q Consensus 188 v~ 189 (459)
.+
T Consensus 81 ~~ 82 (90)
T 4dwf_A 81 TH 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 21
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.58 E-value=3.3e-15 Score=122.73 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=71.3
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 7899999999999999999999999999999999998 99999999999999999999999999999999988443
No 22
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=2.7e-15 Score=122.52 Aligned_cols=74 Identities=24% Similarity=0.261 Sum_probs=71.2
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEE-cCCCCcccccCCCCCCEEEEEEe
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~-LeD~~tL~dy~I~~~svI~L~vr 183 (459)
.-|.|+|++.+|+++.++|++++||++||++|++++|+| +++|+|+|+|+. |+|+++|++|+|+++++|+|+++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 359999999999999999999999999999999999998 999999999999 99999999999999999999876
No 23
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=6.6e-15 Score=119.81 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=75.3
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
.+..|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|||++++.+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEEeccC
Confidence 357899999 778999999999999999999999999999999999999999998 899999999999999999999987
Q ss_pred cc
Q 012653 109 LQ 110 (459)
Q Consensus 109 ~m 110 (459)
+.
T Consensus 83 G~ 84 (87)
T 1wh3_A 83 GP 84 (87)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 24
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=4.9e-15 Score=118.16 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=69.8
Q ss_pred CCEEEEE-EeCCeEE-EEE-eCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 32 DSILIFL-SVGGSVI-PMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 32 ~sM~I~V-tl~G~~~-~l~-V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
+.|+|+| +++|+++ .++ |.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|||+++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 4699999 7789885 999 99999999999999999999999999999999998 89999999999999999998863
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.57 E-value=4.7e-15 Score=116.82 Aligned_cols=75 Identities=28% Similarity=0.556 Sum_probs=70.1
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+| +.+|+++.++|.+++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|+|.++++|++++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 79999 568999999999999999999999999999999999999999997 8999999999999999999998764
No 26
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.4e-15 Score=127.09 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=70.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCCccc
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR 189 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~kv~ 189 (459)
|+|+|++.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++...+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~~ 79 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKSTK 79 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCCC
Confidence 8899999999999999999999999999999999998 99999999999999999999999999999999998776544
Q ss_pred C
Q 012653 190 A 190 (459)
Q Consensus 190 ~ 190 (459)
+
T Consensus 80 ~ 80 (106)
T 3m62_B 80 T 80 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=7.4e-15 Score=122.40 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCC-ccccccCcccccceeeee
Q 012653 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 27 ~~~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstl~Lvl 104 (459)
+..+...|+|+| ++.+ ++.++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |+ .+|++|+|+++++|+|++
T Consensus 9 ~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 9 SHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEEE
T ss_pred cccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEEE
Confidence 445688999999 5566 8999999999999999999999999999999999999998 78 999999999999999999
Q ss_pred ecccc
Q 012653 105 RLSDL 109 (459)
Q Consensus 105 rLsd~ 109 (459)
++.++
T Consensus 87 r~~gg 91 (94)
T 2kan_A 87 KSINR 91 (94)
T ss_dssp CCCSS
T ss_pred eCCCC
Confidence 98765
No 28
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=8.5e-15 Score=119.78 Aligned_cols=80 Identities=16% Similarity=0.339 Sum_probs=74.6
Q ss_pred CCCCEEEEE-EeCC-eEEEE-EeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 30 SNDSILIFL-SVGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 30 ~~~sM~I~V-tl~G-~~~~l-~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
....|+|+| +++| +++.+ +|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|||++++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeC
Confidence 467899999 6788 79999 599999999999999999999999999999999997 8999999999999999999998
Q ss_pred cccc
Q 012653 107 SDLQ 110 (459)
Q Consensus 107 sd~m 110 (459)
.++.
T Consensus 83 ~gG~ 86 (89)
T 1wy8_A 83 DSGP 86 (89)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8763
No 29
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.8e-15 Score=122.73 Aligned_cols=74 Identities=14% Similarity=0.324 Sum_probs=69.5
Q ss_pred cceeeeeecceeeeeecc--CCChHHHHHHHH-HHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVE--RGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~--~~~TV~~LK~kI-~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I-~~~svI~L~vrks 185 (459)
|+|+||+.+|++++++|+ +++||.+||++| +++.|+| +++|+|+|+|+.|+|+.+|++|+| +++++|+|.+++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999998866 999999999999 9999998 999999999999999999999999 7999999988754
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=122.40 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=70.9
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
+..|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|++|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 ~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEEC----
T ss_pred CccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 45799999 778999999999999999999999999999999999999999997 8999999999999999999988765
No 31
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=4.7e-15 Score=119.78 Aligned_cols=77 Identities=30% Similarity=0.506 Sum_probs=70.8
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 32 ~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
..|+|+| +.+|+++.++|.+++||.+||.+|++++++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 4699999 678999999999999999999999999999999999999999998 8999999999999999999998765
No 32
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.56 E-value=4.4e-15 Score=124.30 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
....|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.+
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEEecCC
Confidence 367799999 789999999999999999999999999999999999999999998 899999999999999999999876
Q ss_pred c
Q 012653 109 L 109 (459)
Q Consensus 109 ~ 109 (459)
+
T Consensus 97 G 97 (97)
T 1wyw_B 97 G 97 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=7.7e-15 Score=118.35 Aligned_cols=77 Identities=32% Similarity=0.563 Sum_probs=72.7
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 32 ~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
..|+|+| +++|+++.++|.+++||.+||.+|+++.++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEECcCC
Confidence 4699999 678999999999999999999999999999999999999999998 8999999999999999999998765
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.56 E-value=8.9e-15 Score=119.53 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=69.6
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
+..|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+| +|++|||++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEEC
Confidence 67899999 778999999999999999999999999999999999999999998 8999999999 8999999875
No 35
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.56 E-value=7.9e-15 Score=121.62 Aligned_cols=79 Identities=34% Similarity=0.623 Sum_probs=72.0
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccccc
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA 111 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~ 111 (459)
.|+|+| +++|+++.++|.+++||.+||.+|++.+|+|++.|+|+|+|+.|. |+.+|++|+|.++++|||++++.++..
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 389999 789999999999999999999999999999999999999999998 899999999999999999999998865
Q ss_pred e
Q 012653 112 I 112 (459)
Q Consensus 112 I 112 (459)
.
T Consensus 80 ~ 80 (96)
T 3k9o_B 80 L 80 (96)
T ss_dssp -
T ss_pred c
Confidence 4
No 36
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=1.5e-14 Score=120.46 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=72.8
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHh---cCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~---~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
|+|+|++.+|+.+.++|++++||.+||++|++. .|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 7888 99999999999999999999999999999999998665
Q ss_pred ccc
Q 012653 187 KVR 189 (459)
Q Consensus 187 kv~ 189 (459)
..+
T Consensus 79 ~~~ 81 (95)
T 1uel_A 79 AVS 81 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 444
No 37
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.56 E-value=1.1e-14 Score=117.78 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=70.9
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHh---cCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~---~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
+..|+|+|++.+|+.+.++|++++||.+||++|++. .|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 456999999999999999999999999999999998 7888 99999999999999999999999999999999887
Q ss_pred eC
Q 012653 184 KS 185 (459)
Q Consensus 184 ks 185 (459)
++
T Consensus 81 ~~ 82 (85)
T 2wyq_A 81 KT 82 (85)
T ss_dssp --
T ss_pred CC
Confidence 64
No 38
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.56 E-value=8.6e-15 Score=134.72 Aligned_cols=83 Identities=35% Similarity=0.578 Sum_probs=76.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccccce
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~I 112 (459)
|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++|||+++++++++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 89999 889999999999999999999999999999999999999999998 8999999999999999999999998877
Q ss_pred eeeee
Q 012653 113 TVTTV 117 (459)
Q Consensus 113 ~Vkt~ 117 (459)
.|+..
T Consensus 80 ~vkfs 84 (169)
T 3l0w_B 80 TIKFV 84 (169)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 77753
No 39
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.56 E-value=1.1e-14 Score=114.81 Aligned_cols=75 Identities=36% Similarity=0.621 Sum_probs=71.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+| +.+|+++.+++.+++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|+|.++++|++++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 89999 678999999999999999999999999999999999999999997 8999999999999999999998764
No 40
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=3.1e-15 Score=127.39 Aligned_cols=80 Identities=20% Similarity=0.445 Sum_probs=73.5
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCc---------------ceEEEEcCeecccCCccccccC
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---------------KQKLVFEGRELARSNSRVRDYG 93 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~---------------~QrLvf~Gk~L~~D~~tL~dyg 93 (459)
....|+|+| +++|++++++|.+++||.+||++|+++.++++. +|+|+|+|+.|.+|+.+|++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 356799999 899999999999999999999999999999874 5799999999975779999999
Q ss_pred cccccceeeeeecccc
Q 012653 94 LADGNVLHLVLRLSDL 109 (459)
Q Consensus 94 I~~gstl~LvlrLsd~ 109 (459)
|+++++||+++++++.
T Consensus 84 I~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQK 99 (105)
T ss_dssp CCSSEEEEEEECSCSC
T ss_pred CCCCCEEEEEehhccC
Confidence 9999999999999765
No 41
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=4.6e-15 Score=125.13 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=68.9
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.|+|+|++.+|+++.++|++++||.+||++|++++|+| +++|+|+|+|++|+|+.+|+||+|+++++|+|+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999998 999999999999999999999999999999986
No 42
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.55 E-value=8.8e-15 Score=123.14 Aligned_cols=77 Identities=13% Similarity=0.308 Sum_probs=70.3
Q ss_pred ccccceeeeeecceeeee--eccCCChHHHHHHHH-HHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEE
Q 012653 107 SDLQAITVTTVCGKVFEF--HVERGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLV 182 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~i--eV~~~~TV~~LK~kI-~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I-~~~svI~L~v 182 (459)
...|+|+|||.+|++|++ +|++++||.+||++| ++..|+| +++|+|+|+|+.|+|+.+|++|+| +++++|+|++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 456999999999998887 556999999999999 8888988 999999999999999999999999 9999999999
Q ss_pred eeC
Q 012653 183 RKS 185 (459)
Q Consensus 183 rks 185 (459)
+++
T Consensus 95 skp 97 (98)
T 4a20_A 95 KPN 97 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 865
No 43
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.55 E-value=9.4e-15 Score=120.44 Aligned_cols=75 Identities=31% Similarity=0.421 Sum_probs=71.9
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
...|+|+|++.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|.+|+|+++++|+|++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4569999999999999999999999999999999999998 99999999999999999999999999999999886
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=8.8e-15 Score=120.13 Aligned_cols=77 Identities=30% Similarity=0.582 Sum_probs=68.7
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 32 ~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
..|+|+| +++|+++.++|.+++||++||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4699999 899999999999999999999999999999999999999999998 8999999999999999999998765
No 45
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=5.1e-15 Score=124.83 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=69.0
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
...|+|+| ++.|++++++|.+++||.+||.+|++++|+|+++|+|+|.|++|. |+.+|++|+|+++++|||+.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence 44599999 778999999999999999999999999999999999999999997 89999999999999999874
No 46
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.2e-15 Score=125.53 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=67.6
Q ss_pred CccccccCcccccceeeeeecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCC
Q 012653 86 NSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQR 165 (459)
Q Consensus 86 ~~tL~dygI~~gstl~LvlrLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~ 165 (459)
..+++||.|. +|.++.++-.-.+.|+|++ +|+++.++|++++||++||++|+++.|+| +++|+|+|+|+.|+|+.
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~ 81 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQ 81 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC--STTCCEEETTEECCTTS
T ss_pred cCCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCcC
Confidence 3567888874 5556555544456777887 89999999999999999999999999998 99999999999999999
Q ss_pred cccccCCCCCCEEEEEEee
Q 012653 166 LITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 166 tL~dy~I~~~svI~L~vrk 184 (459)
+|++|+|+++++|+|+.+.
T Consensus 82 tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 82 TVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp BTTTTTCCTTEEEEECCCC
T ss_pred cHHHCCCCCCCEEEEEeCC
Confidence 9999999999999997653
No 47
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=9.4e-15 Score=121.35 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
....|+|+|+. |+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 46789999965 899999999999999999999999999999999999999997 8999999999999999999998764
No 48
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.54 E-value=1e-14 Score=116.65 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=71.2
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
.|+|+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+++|++|+++++++|+++++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEec
Confidence 48899999999999999999999999999999999998 999999999999999999999999999999999874
No 49
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.54 E-value=2e-14 Score=113.13 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=70.3
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+++++++|++++|.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999998 999999999999999999999999999999998874
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=2.9e-14 Score=123.43 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=71.0
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHH------hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC--CEE
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNE--AVI 178 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~------~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~--svI 178 (459)
.+.|.|+|+|.+|++++++|++++||.+||++|+. +++++.++++|+|+|.|+.|+|+++|++|+|+.+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45699999999999999999999999999999999 5676445999999999999999999999998755 689
Q ss_pred EEEEeeCC
Q 012653 179 HLLVRKSA 186 (459)
Q Consensus 179 ~L~vrks~ 186 (459)
||++|...
T Consensus 94 hLvlr~~~ 101 (116)
T 1wgh_A 94 HLVARETL 101 (116)
T ss_dssp EEEECSSC
T ss_pred EEEccCCC
Confidence 99988553
No 51
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.53 E-value=1e-14 Score=136.49 Aligned_cols=84 Identities=32% Similarity=0.510 Sum_probs=80.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.-.|+|+| +++|++++++|.+++||.+||.+|++++|+|+++|+|+|.|++|. |+.+|++|+|+++++|||++++.++
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 44599999 779999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred cceeee
Q 012653 110 QAITVT 115 (459)
Q Consensus 110 m~I~Vk 115 (459)
..++||
T Consensus 182 ~~~fvk 187 (189)
T 3q3f_A 182 GQTFTK 187 (189)
T ss_dssp CCCCCC
T ss_pred CcceEe
Confidence 999886
No 52
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.53 E-value=2.1e-14 Score=123.14 Aligned_cols=78 Identities=35% Similarity=0.576 Sum_probs=73.6
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...|+|+| +++|+++.++|.+++||.+||.+|+++.|+|++.|+|+|.|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 46899999 689999999999999999999999999999999999999999998 8999999999999999999998764
No 53
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.53 E-value=1.2e-14 Score=118.23 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=71.7
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
..|+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|.+|+|+++++|+|++|.
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 459999999999999999999999999999999999998 999999999999999999999999999999998874
No 54
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.53 E-value=9.7e-15 Score=119.81 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=71.4
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
..|+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|+++...
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 468999999999999999999999999999999999998 99999999999999999999999999999999987543
No 55
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.53 E-value=2.6e-14 Score=118.45 Aligned_cols=76 Identities=32% Similarity=0.418 Sum_probs=72.0
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
+|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|.+|+|+++++|+|++|...
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 48999999999999999999999999999999999998 99999999999999999999999999999999988544
No 56
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=3.1e-14 Score=115.81 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=71.9
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
..|+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+++++++|+|++|.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC--hHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 469999999999999999999999999999999999998 999999999999999999999999999999999874
No 57
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=2.6e-14 Score=115.38 Aligned_cols=75 Identities=29% Similarity=0.385 Sum_probs=71.2
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.|+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 48999999999999999999999999999999999998 9999999999999999999999999999999998843
No 58
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.52 E-value=1.8e-14 Score=120.48 Aligned_cols=76 Identities=12% Similarity=0.236 Sum_probs=72.7
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
...|+|+|++.+|+++.++|++++||..||++|+++.|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|+++.
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 4569999999999999999999999999999999999998 999999999999999999999999999999999874
No 59
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=2.5e-14 Score=117.41 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=69.8
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.+|+|+|++.+|+++.++|++++||++||++|+++.++| +++|+|+|+|+.|+|+.+|++|+++++++|+|++|..
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 369999999999999999999999999999999999998 9999999999999999999999999999999988743
No 60
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.52 E-value=4.3e-14 Score=111.24 Aligned_cols=74 Identities=32% Similarity=0.445 Sum_probs=70.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
|+|+|++.+|+.+.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+++++++|++++|..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999998 9999999999999999999999999999999998743
No 61
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.52 E-value=4.7e-14 Score=114.12 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=69.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHH---hCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
+..|+|+| +++|+++.++|.+++||.+||.+|+++ +|+++++|+|+|+|+.|. |+.+|++|+|.++++|||+.+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence 46799999 778999999999999999999999998 899999999999999998 8999999999999999998764
No 62
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=4.9e-14 Score=115.23 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=72.1
Q ss_pred cccceeeeeecc-eeeee-eccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 108 DLQAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 108 d~m~I~Vkt~~G-k~~~i-eV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
..|+|+|++.+| +++.+ +|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|.+|+|+++++|||++|..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 469999999999 79999 5999999999999999999998 9999999999999999999999999999999998854
Q ss_pred C
Q 012653 186 A 186 (459)
Q Consensus 186 ~ 186 (459)
.
T Consensus 84 g 84 (89)
T 1wy8_A 84 S 84 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 63
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.6e-14 Score=119.68 Aligned_cols=76 Identities=32% Similarity=0.435 Sum_probs=71.6
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
...|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|.+|+|+++++|+|++|.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4569999999999999999999999999999999999998 999999999999999999999999999999999874
No 64
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=2.9e-14 Score=121.19 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=73.1
Q ss_pred CCCCCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 26 PEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 26 ~~~~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
|.+.....|+|+| ++.|+++.++|.+++||.+||.+|+++.|+++++|+|+|+|+.|. |+.+|++|||+++++|||++
T Consensus 16 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 16 PPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp -----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEEC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE
Confidence 3445678899999 679999999999999999999999999999999999999999997 89999999999999999998
Q ss_pred eccc
Q 012653 105 RLSD 108 (459)
Q Consensus 105 rLsd 108 (459)
+..+
T Consensus 95 ~~~~ 98 (106)
T 1ttn_A 95 SQPV 98 (106)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 7654
No 65
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=113.78 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=71.2
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
..|+|+|++.+|+.+.++|++++||++||++|++..++| +++|+|+|+|+.|+|+.+|++|+++++++|+|++|.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 458999999999999999999999999999999999998 999999999999999999999999999999998764
No 66
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.3e-14 Score=119.55 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=67.1
Q ss_pred EEEEE-EeCCeEEEEEeC--CCCCHHHHHHHH-HHHhCCCCcceEEEEcCeecccCCccccccCc-ccccceeeeeec
Q 012653 34 ILIFL-SVGGSVIPMRVM--ESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLRL 106 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~--~~dTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstl~LvlrL 106 (459)
|+|+| ++.|++++++|+ +++||.+||.+| +++.|+|+++|+|+|.|+.|. |+.+|++|+| .++++|+|..+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCC
Confidence 89999 889998888766 999999999999 999999999999999999998 8999999999 799999988764
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.50 E-value=4e-14 Score=127.93 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=73.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
+..|+|+| +++|++++++|.+++||++||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||+++++++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 67899999 778999999999999999999999999999999999999999998 8999999999999999999999876
Q ss_pred c
Q 012653 110 Q 110 (459)
Q Consensus 110 m 110 (459)
.
T Consensus 158 ~ 158 (159)
T 3rt3_B 158 G 158 (159)
T ss_dssp -
T ss_pred C
Confidence 3
No 68
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.25 E-value=1.6e-15 Score=120.21 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=71.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
|+|+| +.+|+++.++|.+++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|+|.++++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999 778999999999999999999999999999999999999999998 899999999999999999999875
No 69
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=3.1e-14 Score=117.91 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCEEEEE-EeCCe--EEEEEeCCCCCHHHHHHHHHHHh--CCCCcceEEEEcCeecccCCcccccc--Ccccccceeee
Q 012653 31 NDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV 103 (459)
Q Consensus 31 ~~sM~I~V-tl~G~--~~~l~V~~~dTV~~LK~kIq~~~--Gip~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstl~Lv 103 (459)
...|+|+| +.+++ ++.++|.+++||.+||.+|++++ |+++++|+|+|.|+.|. |+.+|++| +|+++++|||+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence 56799999 66777 68888889999999999999998 99999999999999998 88999999 99999999999
Q ss_pred eecccc
Q 012653 104 LRLSDL 109 (459)
Q Consensus 104 lrLsd~ 109 (459)
++++++
T Consensus 84 ~~~~gg 89 (93)
T 1wgd_A 84 CNVKSG 89 (93)
T ss_dssp CCCCCC
T ss_pred eCCCCC
Confidence 998765
No 70
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.50 E-value=7.6e-14 Score=110.54 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=68.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
|+|+|++ +|+.+.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+++++++|+|+.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 8899999 99999999999999999999999999998 999999999999999999999999999999997653
No 71
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.50 E-value=4.5e-14 Score=118.78 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=68.2
Q ss_pred CCCCEEEEE-EeCCeEEEE--EeCCCCCHHHHHHHH-HHHhCCCCcceEEEEcCeecccCCccccccCc-ccccceeeee
Q 012653 30 SNDSILIFL-SVGGSVIPM--RVMESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVL 104 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l--~V~~~dTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstl~Lvl 104 (459)
....|+|+| +++|+++++ +|.+++||.+||.+| +++.|+|+++|+|+|.|+.|. |+.+|++|+| +++++|+|++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEE
Confidence 467899999 889987766 566999999999999 888999999999999999998 8999999999 9999999987
Q ss_pred ec
Q 012653 105 RL 106 (459)
Q Consensus 105 rL 106 (459)
+-
T Consensus 95 sk 96 (98)
T 4a20_A 95 KP 96 (98)
T ss_dssp CC
T ss_pred eC
Confidence 53
No 72
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=5.3e-14 Score=113.42 Aligned_cols=75 Identities=31% Similarity=0.380 Sum_probs=71.5
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 48999999999999999999999999999999999998 9999999999999999999999999999999998743
No 73
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.49 E-value=5.1e-14 Score=121.78 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=67.7
Q ss_pred EEEEE--EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccc-------ccceeeee
Q 012653 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLAD-------GNVLHLVL 104 (459)
Q Consensus 34 M~I~V--tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~-------gstl~Lvl 104 (459)
|.+|+ .....++.++|.+++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||++ +++|||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 55666 555669999999999999999999999999999999999999998 999999999999 99999999
Q ss_pred eccc
Q 012653 105 RLSD 108 (459)
Q Consensus 105 rLsd 108 (459)
|..|
T Consensus 80 r~~~ 83 (118)
T 4ajy_B 80 RADD 83 (118)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9754
No 74
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.8e-13 Score=119.89 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=69.9
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...|+|+|+..|+++.++|.+++||.+||.+|+++.|+++++|+|+|.|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCCC
Confidence 57899999433999999999999999999999999999999999999999997 8999999999999999999988765
No 75
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=7.1e-14 Score=116.44 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=72.3
Q ss_pred cccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEEee
Q 012653 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~-~tL~dy~I~~~svI~L~vrk 184 (459)
....|+|+|++.+| ++.++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+ ++|++|+|+++++|+|++|.
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP--IKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 35669999999888 89999999999999999999999998 9999999999999999 99999999999999999875
Q ss_pred CC
Q 012653 185 SA 186 (459)
Q Consensus 185 s~ 186 (459)
..
T Consensus 89 ~g 90 (94)
T 2kan_A 89 IN 90 (94)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 76
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=1.2e-13 Score=119.56 Aligned_cols=78 Identities=24% Similarity=0.303 Sum_probs=70.5
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHH------HhCC--CCcceEEEEcCeecccCCccccccCcccc--
Q 012653 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGF--FVKKQKLVFEGRELARSNSRVRDYGLADG-- 97 (459)
Q Consensus 29 ~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~------~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~g-- 97 (459)
.+.+.|+|+| +++|++++++|++++||.+||.+|++ ++++ ++++|+|+|.|++|+ |+.+|++|+|..+
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~ 90 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKT 90 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCc
Confidence 3578899999 78999999999999999999999999 6675 699999999999998 9999999999765
Q ss_pred cceeeeeecc
Q 012653 98 NVLHLVLRLS 107 (459)
Q Consensus 98 stl~LvlrLs 107 (459)
.+|||++++.
T Consensus 91 ~tlhLvlr~~ 100 (116)
T 1wgh_A 91 TVMHLVARET 100 (116)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEccCC
Confidence 6899999875
No 77
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=5.9e-14 Score=122.94 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=71.9
Q ss_pred eeeecccccceeeeeecceee-eeeccCCChHHHHHHHHH-----HhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC
Q 012653 102 LVLRLSDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIA-----KKGREFVDLKNQELICDGEELEDQRLITDICKRNE 175 (459)
Q Consensus 102 LvlrLsd~m~I~Vkt~~Gk~~-~ieV~~~~TV~~LK~kI~-----~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~ 175 (459)
|.....+.|.|+|||.+|+.+ .+++++++||.+||++|+ .++++|.++++|+|+|+|+.|+|++||++|+|+.+
T Consensus 9 ~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 9 LEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp -CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred hhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 334455889999999999988 699999999999999994 55677733489999999999999999999999988
Q ss_pred ------CEEEEEEeeC
Q 012653 176 ------AVIHLLVRKS 185 (459)
Q Consensus 176 ------svI~L~vrks 185 (459)
+++||++|..
T Consensus 89 ~~~~~v~tmhlVlrl~ 104 (126)
T 1se9_A 89 NLAGAVTTMHVIIQAP 104 (126)
T ss_dssp SCTTCCEEEEEEECCC
T ss_pred CccCCcEEEEEEeccC
Confidence 7899998744
No 78
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.48 E-value=6.4e-14 Score=121.40 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=65.4
Q ss_pred EEEEE-EeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcc-------cccceeeee
Q 012653 34 ILIFL-SVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-------DGNVLHLVL 104 (459)
Q Consensus 34 M~I~V-tl~G-~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-------~gstl~Lvl 104 (459)
|++|| ...+ .+++++|.+++||.+||.+|+.++|+|+++|+|+|+|+.|+ |+.+|++|||+ .+++|||++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence 45555 3334 57999999999999999999999999999999999999997 99999999999 799999999
Q ss_pred ecccc
Q 012653 105 RLSDL 109 (459)
Q Consensus 105 rLsd~ 109 (459)
| .|+
T Consensus 80 r-~~g 83 (118)
T 2fnj_B 80 R-ADD 83 (118)
T ss_dssp B-SSS
T ss_pred c-CCC
Confidence 8 443
No 79
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=6.5e-14 Score=119.00 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=73.7
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
...|+|+|++.+|+++.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++++.
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 3458999999999999999999999999999999999998 99999999999999999999999999999999987654
Q ss_pred c
Q 012653 187 K 187 (459)
Q Consensus 187 k 187 (459)
.
T Consensus 99 ~ 99 (106)
T 1ttn_A 99 Q 99 (106)
T ss_dssp C
T ss_pred C
Confidence 3
No 80
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.3e-14 Score=120.97 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=68.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
|+|+| +++|+++.++|.+++||.+||.+|+++.|+++++|+|+|.|+.|. |+.+|++|||++|++|+|+++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999 679999999999999999999999999999999999999999998 89999999999999999998754
No 81
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.48 E-value=5.4e-14 Score=121.87 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=67.4
Q ss_pred cceeeeeecce-eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCC-------CCCEEEEE
Q 012653 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR-------NEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk-~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~-------~~svI~L~ 181 (459)
|+++|++..++ ++.++|++++||.+||++|+.++|+| +++|+|+|+|+.|+|+++|+||+|+ ++++|||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 67788877776 58899999999999999999999999 9999999999999999999999999 79999999
Q ss_pred Ee
Q 012653 182 VR 183 (459)
Q Consensus 182 vr 183 (459)
+|
T Consensus 79 lr 80 (118)
T 2fnj_B 79 FR 80 (118)
T ss_dssp EB
T ss_pred ec
Confidence 98
No 82
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.48 E-value=1.6e-13 Score=108.64 Aligned_cols=71 Identities=27% Similarity=0.463 Sum_probs=67.0
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 34 M~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|+|+|+.+|+++.++|.+++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||.+|++||++.+
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEc
Confidence 88999449999999999999999999999999999999999999999998 889999999999999998764
No 83
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=117.42 Aligned_cols=78 Identities=35% Similarity=0.576 Sum_probs=73.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...|+|+| +++|+++.++|.+++||.+||.+|+++.|++++.|+|+|+|+.|. |+.+|++|+|.++++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 46899999 668999999999999999999999999999999999999999997 8999999999999999999998764
No 84
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.47 E-value=1.6e-13 Score=114.63 Aligned_cols=75 Identities=32% Similarity=0.443 Sum_probs=71.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
|+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+++++++|+|+++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 7899999999999999999999999999999999998 99999999999999999999999999999999987543
No 85
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1e-13 Score=116.73 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=72.5
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 29 ~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
..++.|+|+| +.+|+ +.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|+++++
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEcCC
Confidence 3478899999 56665 799999999999999999999999999999999999997 89999999999999999999886
Q ss_pred cc
Q 012653 108 DL 109 (459)
Q Consensus 108 d~ 109 (459)
++
T Consensus 96 ~~ 97 (100)
T 1yqb_A 96 HR 97 (100)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 86
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.3e-13 Score=114.73 Aligned_cols=73 Identities=18% Similarity=0.424 Sum_probs=68.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHH---hCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
|+|+| +++|+++.++|.+++||.+||.+|++. +|+|+++|+|+|+|+.|. |+.+|++|||.++++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEeCC
Confidence 89999 778999999999999999999999999 899999999999999997 89999999999999999988653
No 87
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.47 E-value=6.9e-14 Score=116.07 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=68.4
Q ss_pred cccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
+...|+|+|++ |+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+++|++|+|+++++|+|++|.
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 34569999998 8999999999999999999999999998 999999999999999999999999999999999874
No 88
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.47 E-value=9.5e-14 Score=120.06 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=68.6
Q ss_pred cceeeeeecce-eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCC-------CCEEEEE
Q 012653 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRN-------EAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk-~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~-------~svI~L~ 181 (459)
|.+|++...++ ++.++|++++||.+||++|+.++|+| +++|+|+|+|+.|+|.+||+||+|++ +++|||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 56788877776 77889999999999999999999999 99999999999999999999999999 9999999
Q ss_pred EeeC
Q 012653 182 VRKS 185 (459)
Q Consensus 182 vrks 185 (459)
+|..
T Consensus 79 lr~~ 82 (118)
T 4ajy_B 79 FRAD 82 (118)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9853
No 89
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.47 E-value=1.2e-13 Score=121.00 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.6
Q ss_pred CCCEEEEE-EeCCeEE-EEEeCCCCCHHHHHHHH-----HHHhCCCC--cceEEEEcCeecccCCccccccCcccc----
Q 012653 31 NDSILIFL-SVGGSVI-PMRVMESDSIASVKLRI-----QSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADG---- 97 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~-~l~V~~~dTV~~LK~kI-----q~~~Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~g---- 97 (459)
.+.|+|+| +++|+.+ ++++++++||++||++| +.++|+|+ ++|+|+|+|+.|+ |+.+|++|+|+.+
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence 68999999 8899888 79999999999999999 56778986 8999999999998 9999999999998
Q ss_pred --cceeeeeecccc
Q 012653 98 --NVLHLVLRLSDL 109 (459)
Q Consensus 98 --stl~LvlrLsd~ 109 (459)
.++||++++.++
T Consensus 93 ~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 93 AVTTMHVIIQAPVT 106 (126)
T ss_dssp CCEEEEEEECCCSS
T ss_pred CcEEEEEEeccCCc
Confidence 789999998865
No 90
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=6.4e-14 Score=116.44 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...|+|+|+..|+++.++|.+++||.+||.+|++++|+++++|+|+|.|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 57899999444999999999999999999999999999999999999999997 8999999999999999999988764
No 91
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=7.9e-14 Score=119.36 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCEEEEE-Ee---CCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 31 NDSILIFL-SV---GGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 31 ~~sM~I~V-tl---~G~~~~l~V~~-~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
+..|+|+| +. +|+++.++|.+ ++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.++++|||+++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEEEEE
Confidence 56799999 66 78999999998 99999999999999999999999999999998 899999999999999999999
Q ss_pred cccc
Q 012653 106 LSDL 109 (459)
Q Consensus 106 Lsd~ 109 (459)
++++
T Consensus 104 ~~GG 107 (111)
T 1we6_A 104 ERSG 107 (111)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 8876
No 92
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=3.5e-14 Score=120.87 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=71.1
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCC---------------CcEEEEECCEEcC-CCCcccccCC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---------------KNQELICDGEELE-DQRLITDICK 172 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~---------------~~Q~Li~~Gk~Le-D~~tL~dy~I 172 (459)
.|+|+|++++|+++.++|++++||.+||++|+++++++ + ++|+|+|+|+.|. |.++|.+|+|
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~--~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 49999999999999999999999999999999999977 5 4679999999996 6799999999
Q ss_pred CCCCEEEEEEeeCCcc
Q 012653 173 RNEAVIHLLVRKSAKV 188 (459)
Q Consensus 173 ~~~svI~L~vrks~kv 188 (459)
+++++|||+.+...+-
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999866553
No 93
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=1.6e-13 Score=115.79 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCCEEEEE-EeCC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 31 NDSILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 31 ~~sM~I~V-tl~G----~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
...|+|+| ...+ +++.++|.+++||.+||.+|++++|+++++|+|+|+|+.|.+|..+|++|+|+++++|||+.+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 45699999 5433 799999999999999999999999999999999999999983337999999999999999998
Q ss_pred cccc
Q 012653 106 LSDL 109 (459)
Q Consensus 106 Lsd~ 109 (459)
.+++
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7655
No 94
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.2e-13 Score=114.30 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=69.2
Q ss_pred cccceeeeeecce--eeeeeccCCChHHHHHHHHHHhc--CCCCCCCcEEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 012653 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (459)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~ieV~~~~TV~~LK~kI~~~~--gip~~~~~Q~Li~~Gk~LeD~~tL~dy--~I~~~svI~L~ 181 (459)
..|+|+|++.+|+ .+.++|++++||.+||++|++++ +++ +++|+|+|+|+.|+|+++|++| +|+++++|||+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 3588999999988 56677779999999999999998 888 9999999999999999999999 99999999998
Q ss_pred EeeC
Q 012653 182 VRKS 185 (459)
Q Consensus 182 vrks 185 (459)
++..
T Consensus 84 ~~~~ 87 (93)
T 1wgd_A 84 CNVK 87 (93)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8743
No 95
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.19 E-value=5.4e-15 Score=117.19 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=70.7
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
|+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+++++++|+|++|..
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 7899999999999999999999999999999999998 9999999999999999999999999999999998743
No 96
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.5e-13 Score=115.66 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=72.4
Q ss_pred cccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.+..|+|+|++.+|+ +.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 355699999999887 7999999999999999999999998 9999999999999999999999999999999998865
Q ss_pred C
Q 012653 186 A 186 (459)
Q Consensus 186 ~ 186 (459)
.
T Consensus 96 ~ 96 (100)
T 1yqb_A 96 H 96 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.45 E-value=1.7e-13 Score=117.42 Aligned_cols=74 Identities=32% Similarity=0.442 Sum_probs=71.5
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
.|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|.++|.+|+|+++++|+|++|.
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 59999999999999999999999999999999999998 999999999999999999999999999999999874
No 98
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=113.84 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=71.6
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
....|+|+|+..|+++.++|.+++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||.++++|+|+.+++.
T Consensus 22 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 22 HPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp -CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence 367899999544899999999999999999999999999999999999999997 899999999999999999988753
No 99
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=121.24 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=70.5
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHH------hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCC--EE
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VI 178 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~------~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~s--vI 178 (459)
...|.|+|+|.+|++++++|++++||.+||++|+. ++++|.++++|+|+|+|+.|+|+++|++|+|+.++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34588999999999999999999999999999999 67775458999999999999999999999998665 78
Q ss_pred EEEEeeC
Q 012653 179 HLLVRKS 185 (459)
Q Consensus 179 ~L~vrks 185 (459)
||++|..
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9988754
No 100
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.44 E-value=2.4e-13 Score=125.11 Aligned_cols=75 Identities=32% Similarity=0.452 Sum_probs=71.8
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
|+|+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecc
Confidence 7899999999999999999999999999999999998 99999999999999999999999999999999998443
No 101
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=114.42 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=71.9
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
...|+|+|++. |+.+.++|++++||++||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 45689999988 8899999999999999999999999998 99999999999999999999999999999999987554
No 102
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.6e-13 Score=115.67 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=59.9
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
++++.++|++++||.+||++|++++|+| +++|+|+|+|++|+|+++|++|+|+++++|+++.-+.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 7889999999999999999999999998 9999999999999999999999999999995544333
No 103
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=115.26 Aligned_cols=75 Identities=32% Similarity=0.419 Sum_probs=71.7
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
..|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+|++|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 469999999999999999999999999999999999998 999999999999999999999999999999999874
No 104
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=124.72 Aligned_cols=78 Identities=35% Similarity=0.604 Sum_probs=70.8
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...|+|+| +.+|++++++|.+++||.+||.+|+.++|+|+++|+|+|+|++|. |+.+|.+|+|+++++|||+++++++
T Consensus 94 ~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBSGGGTCCTTCEEEECC-----
T ss_pred cccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCC-CCCcHHHhCCCCCCEEEEEEecCCC
Confidence 67899999 789999999999999999999999999999999999999999998 8999999999999999999998864
No 105
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=1.1e-13 Score=116.57 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=65.2
Q ss_pred CEEEEE-EeC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 33 SILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 33 sM~I~V-tl~--G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
+++|++ .-. +++++++|.+++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++| +++++++
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEE-EEEEECC
Confidence 566665 212 689999999999999999999999999999999999999998 8999999999999999 6666653
No 106
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=3e-13 Score=114.73 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...|+|+| ...++ +.++|.+++||.+||.+|++++|+++++|+|+|+|+.|. |+.+|++|+|.++++|||++++.++
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 67799999 56665 799999999999999999999999999999999999997 8999999999999999999988754
No 107
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-13 Score=118.31 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHH------HhCCC--CcceEEEEcCeecccCCccccccCccccc--c
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN--V 99 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~------~~Gip--~~~QrLvf~Gk~L~~D~~tL~dygI~~gs--t 99 (459)
...|+|+| +++|++++++|++++||++||++|++ ++|+| +++|+|+|.|+.|+ |+.+|++|+|+.++ +
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV 93 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence 56799999 78999999999999999999999999 77884 89999999999998 99999999999665 7
Q ss_pred eeeeeeccc
Q 012653 100 LHLVLRLSD 108 (459)
Q Consensus 100 l~LvlrLsd 108 (459)
+||++++..
T Consensus 94 lhlv~r~~~ 102 (125)
T 2gow_A 94 MHLVARETL 102 (125)
T ss_dssp EEEEECSCC
T ss_pred EEEEecCCC
Confidence 899998864
No 108
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=4.4e-13 Score=113.70 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=71.5
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
...|+|+|++.+|+ +.++|+.++||.+||++|++..+++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++...
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC--TTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 34589999998886 7999999999999999999999998 99999999999999999999999999999999987554
Q ss_pred c
Q 012653 187 K 187 (459)
Q Consensus 187 k 187 (459)
.
T Consensus 92 ~ 92 (106)
T 1wx7_A 92 R 92 (106)
T ss_dssp C
T ss_pred C
Confidence 3
No 109
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=4e-13 Score=117.70 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=70.1
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
..|+|+|++. |+.+.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|.+|+|+++++|+|+++...
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 4589999998 9999999999999999999999999998 99999999999999999999999999999999988543
No 110
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=3.5e-13 Score=111.86 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=70.5
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEEeeCC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~-~tL~dy~I~~~svI~L~vrks~ 186 (459)
..|+|+|++.+|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ ++|.+|+|+++++|||+++++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 458999999999999999999999999999999886 5899999999999999 9999999999999999988665
Q ss_pred ccc
Q 012653 187 KVR 189 (459)
Q Consensus 187 kv~ 189 (459)
..+
T Consensus 81 ~~~ 83 (95)
T 1wia_A 81 AAV 83 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 111
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=2.5e-13 Score=116.24 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=71.9
Q ss_pred ccccceeeeee---cceeeeeeccC-CChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 107 SDLQAITVTTV---CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 107 sd~m~I~Vkt~---~Gk~~~ieV~~-~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
.+.|+|+|++. +|+.+.++|++ ++||.+||++|+...|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 46799999998 89999999998 999999999999999998 9999999999999999999999999999999998
Q ss_pred ee
Q 012653 183 RK 184 (459)
Q Consensus 183 rk 184 (459)
|.
T Consensus 103 r~ 104 (111)
T 1we6_A 103 RE 104 (111)
T ss_dssp SS
T ss_pred Ec
Confidence 73
No 112
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=1.7e-13 Score=113.79 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=71.1
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
..|+|+|++. |+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++...
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 4589999998 9999999999999999999999999998 99999999999999999999999999999999887543
No 113
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.41 E-value=1.6e-14 Score=126.79 Aligned_cols=75 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+| +++|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|++|. |+.+|++|+|.++++|+|++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999 789999999999999999999999999999999999999999998 8999999999999999999998876
No 114
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=5.9e-13 Score=114.70 Aligned_cols=79 Identities=29% Similarity=0.389 Sum_probs=74.2
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
.+..+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++...
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 4668999999999999999999999999999999999998 99999999999999999999999999999999988554
Q ss_pred c
Q 012653 187 K 187 (459)
Q Consensus 187 k 187 (459)
.
T Consensus 85 G 85 (114)
T 2kdi_A 85 G 85 (114)
T ss_dssp S
T ss_pred C
Confidence 3
No 115
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.41 E-value=6.7e-13 Score=112.81 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCCCEEEEE-EeC--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCc-ccccceeeeee
Q 012653 30 SNDSILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLR 105 (459)
Q Consensus 30 ~~~sM~I~V-tl~--G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstl~Lvlr 105 (459)
.+-.|+|+| ... +.+++++|.+++||++||.+|++++|+|+++|||+|+|+.+. |+.+|.+||| ++|+++||++.
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEEC
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEEE
Confidence 355677888 555 479999999999999999999999999999999999999776 8999999999 59999999874
No 116
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=4.2e-13 Score=112.20 Aligned_cols=76 Identities=11% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCCCEEEEEEeCCeEE-EEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 30 SNDSILIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~-~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
..+.|+|+|+..|+++ .++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |+ +|++|+|+++++|+|+....
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecch
Confidence 4678999998789999 69999999999999999999999999999999999998 77 99999999999999987654
No 117
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=4e-13 Score=113.35 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=70.4
Q ss_pred cccceeeeeecc----eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEE
Q 012653 108 DLQAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLV 182 (459)
Q Consensus 108 d~m~I~Vkt~~G----k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~-~tL~dy~I~~~svI~L~v 182 (459)
..|+|+|++.++ +.+.++|++++||.+||++|+++++++ +++|+|+|+|+.|+|+ ++|.+|+|+++++|+|+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 458899998654 789999999999999999999999998 9999999999999987 799999999999999988
Q ss_pred eeCCc
Q 012653 183 RKSAK 187 (459)
Q Consensus 183 rks~k 187 (459)
+....
T Consensus 84 ~~~gg 88 (102)
T 1v5o_A 84 KDNVG 88 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75444
No 118
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.40 E-value=4.1e-13 Score=110.74 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=71.5
Q ss_pred CCCCEEEEEEeCCeEEEE-EeCCCCCHHHHHHHHHHHhCCCCcceEEE---EcCeecccCCccccccCcccccceeeeee
Q 012653 30 SNDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l-~V~~~dTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
....|+|+|+..|+++.+ +|.+++||.+||.+|++++|+|+++|+|+ |.|+.|. |+.+|++|+|+++++|+|+..
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEec
Confidence 357899999779999999 99999999999999999999999999999 9999997 899999999999999999765
Q ss_pred cc
Q 012653 106 LS 107 (459)
Q Consensus 106 Ls 107 (459)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 119
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=1.1e-12 Score=107.16 Aligned_cols=75 Identities=25% Similarity=0.470 Sum_probs=69.7
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
+...+.+.++++|+++.++|.+++||.+||.+|++..|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|+.+
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence 456777777999999999999999999999999999999999999999999997 899999999999999998754
No 120
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=114.46 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=65.5
Q ss_pred cccceeeeeecce--eeeeeccCCChHHHHHHHHHHh-cCCCCCCCcEEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 012653 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKK-GREFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (459)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~ieV~~~~TV~~LK~kI~~~-~gip~~~~~Q~Li~~Gk~LeD~~tL~dy--~I~~~svI~L~ 181 (459)
..|+|+||+.+|+ +++++|++++||.+||++|+++ .|++ ++++|+|+|+|+.|+|+++|++| +|+++++|||+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC-CTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC-ChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4599999999998 6789999999999999999986 4655 36999999999999999999999 99999999984
No 121
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.1e-12 Score=108.24 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=69.7
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCC-----CCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 30 SNDSILIFLSVGGSVIPMRVMES-----DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~-----dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
....|+|+|+..++++.+++.++ +||.+||.+|++++|+|+++|+|+|.|+.|.+++.+|++|+|+++++|||+.
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 35689999966789999999995 9999999999999999999999999999998446789999999999999987
Q ss_pred ec
Q 012653 105 RL 106 (459)
Q Consensus 105 rL 106 (459)
+.
T Consensus 84 ~~ 85 (92)
T 1wxv_A 84 KK 85 (92)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 122
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.39 E-value=8.9e-13 Score=113.55 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=72.1
Q ss_pred CCCEEEEEEe-----------CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccc
Q 012653 31 NDSILIFLSV-----------GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNV 99 (459)
Q Consensus 31 ~~sM~I~Vtl-----------~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gst 99 (459)
+..|+|+|+. +|+++.++|.+++||.+||.+|++.+|+|+++|+|+|.|+.|. |+.+|++|+|.++++
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGAV 101 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSCE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCCE
Confidence 4578888833 4789999999999999999999999999999999999999997 899999999999999
Q ss_pred eeeeeecccc
Q 012653 100 LHLVLRLSDL 109 (459)
Q Consensus 100 l~LvlrLsd~ 109 (459)
|||+++++++
T Consensus 102 i~lv~rl~GG 111 (115)
T 1we7_A 102 IHLALKERSG 111 (115)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 123
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.39 E-value=1e-12 Score=111.67 Aligned_cols=73 Identities=12% Similarity=-0.039 Sum_probs=68.1
Q ss_pred cceeeeeecc--eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEEee
Q 012653 110 QAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRK 184 (459)
Q Consensus 110 m~I~Vkt~~G--k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I-~~~svI~L~vrk 184 (459)
|+|+|++..+ .+++++|++++||++||++|++++|+| +++|||+|+|+.++|+++|.+|+| ++|+++||++..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 7889998774 789999999999999999999999999 999999999999999999999999 699999998753
No 124
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.38 E-value=3.4e-14 Score=128.67 Aligned_cols=75 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|++|. |+.+|++|+|+++++|||++++.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEeeccCC
Confidence 89999 789999999999999999999999999999999999999999998 8999999999999999999999875
No 125
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=9.8e-13 Score=109.11 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCC-ccccccCcccccceeeeeecc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstl~LvlrLs 107 (459)
+...|+|+| ++.|+++.++|.+++||.+||.+|+++. +++|+|+|.|+.|. |+ .+|++|+|+++++|||+++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECCC
Confidence 367899999 7789999999999999999999999987 89999999999998 77 999999999999999998765
Q ss_pred c
Q 012653 108 D 108 (459)
Q Consensus 108 d 108 (459)
.
T Consensus 80 ~ 80 (95)
T 1wia_A 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 126
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.38 E-value=3.9e-13 Score=113.23 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=63.7
Q ss_pred CCCCEEEEE-EeCCe--EEEEEeCCCCCHHHHHHHHHHH-hCCC-CcceEEEEcCeecccCCcccccc--Ccccccceee
Q 012653 30 SNDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSY-NGFF-VKKQKLVFEGRELARSNSRVRDY--GLADGNVLHL 102 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~--~~~l~V~~~dTV~~LK~kIq~~-~Gip-~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstl~L 102 (459)
+...|+|+| +++++ +++++|.+++||.+||.+|+++ .|.+ +++|||+|.|+.|. |+.+|++| +|+++++|||
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEe
Confidence 467899999 66777 6799999999999999999986 5666 59999999999998 99999999 9999999998
Q ss_pred e
Q 012653 103 V 103 (459)
Q Consensus 103 v 103 (459)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 127
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.38 E-value=1.4e-12 Score=115.92 Aligned_cols=78 Identities=35% Similarity=0.604 Sum_probs=73.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
...|+|+| +++|+++.+++.+++||.+||.+|+++.|+|++.|+|+|.|+.|. |+.+|++|+|.++++|||+++++++
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 56799999 789999999999999999999999999999999999999999998 8999999999999999999998764
No 128
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.3e-12 Score=111.08 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=69.1
Q ss_pred ccceeeeeecc---eeeeee--------ccCC-ChHHHHHHHHHHhc--CCCCCCCc-EEEEECCEEcCCCCcccccCCC
Q 012653 109 LQAITVTTVCG---KVFEFH--------VERG-RNVGYVKQQIAKKG--REFVDLKN-QELICDGEELEDQRLITDICKR 173 (459)
Q Consensus 109 ~m~I~Vkt~~G---k~~~ie--------V~~~-~TV~~LK~kI~~~~--gip~~~~~-Q~Li~~Gk~LeD~~tL~dy~I~ 173 (459)
.|+|+|++.++ +++.++ |+++ +||.+||++|+... +++ +++ |+|+|+|+.|+|+++|.+|+|+
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcHHHcCCC
Confidence 48999999988 889999 5554 99999999999999 988 999 9999999999999999999999
Q ss_pred CCCEEEEEEeeCC
Q 012653 174 NEAVIHLLVRKSA 186 (459)
Q Consensus 174 ~~svI~L~vrks~ 186 (459)
++++|||+++...
T Consensus 90 ~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 90 PGSTVHVLRKSWS 102 (107)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999887543
No 129
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.37 E-value=5.6e-13 Score=124.70 Aligned_cols=76 Identities=32% Similarity=0.418 Sum_probs=72.2
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
.|+|+|++.+|+++.++|++++||.+||++|++++++| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|...
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence 49999999999999999999999999999999999998 99999999999999999999999999999999987443
No 130
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=8.4e-13 Score=111.39 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=67.9
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE--cCeecccCCccccccCcccccceeeeeec
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf--~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
+...|++++ +.+|++++++|++++||++||.+|++++|||+++|+|+| .|+ |. |+.+|++|+|+.+++|||++.-
T Consensus 5 ~~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 5 SSGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred CCcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence 344688888 899999999999999999999999999999999999996 566 87 8999999999999999998764
No 131
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.35 E-value=6.6e-14 Score=122.93 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=0.0
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
|+|+|++.+|+++.++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 7899999999999999999999999999999999998 9999999999999999999999999999999998843
No 132
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=2e-12 Score=105.49 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=66.2
Q ss_pred ceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 111 ~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
.+++++.+|+.+.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 356677899999999999999999999999999998 99999999999999999999999999999998754
No 133
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.35 E-value=2.5e-12 Score=110.72 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=62.9
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
++|+++.++|++++||.+||++|+...|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|.
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl 108 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKE 108 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCC--TTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEc
Confidence 368899999999999999999999999998 999999999999999999999999999999999873
No 134
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=1.4e-12 Score=108.68 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
....|+|+|+..++++.++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |. +|++|+|+++++|||+.+.
T Consensus 14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SS-BHHHHCCCTTEEEEECCSS
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cC-cHHHCCCCCCCEEEEEecc
Confidence 467899999888999999999999999999999999999999999999999994 55 9999999999999987643
No 135
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=1.6e-12 Score=108.73 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=71.3
Q ss_pred cccceeeeeecceee-eeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 108 DLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
..|+|+|+. .|+.+ .++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+ +|++|+|+++++|+|+....+
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence 358899994 78999 599999999999999999999998 9999999999999999 999999999999999765443
Q ss_pred cccCCCCC
Q 012653 187 KVRAKPVQ 194 (459)
Q Consensus 187 kv~~~p~~ 194 (459)
++..|..
T Consensus 82 -~~~~p~~ 88 (96)
T 1wgg_A 82 -LPEEPSA 88 (96)
T ss_dssp -CCCCCCC
T ss_pred -cCCCCCc
Confidence 4444443
No 136
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=4.6e-13 Score=113.01 Aligned_cols=72 Identities=28% Similarity=0.467 Sum_probs=65.5
Q ss_pred CEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 33 sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
.|+|+|+.+|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus 28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECC-TTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 345555558899999999999999999999999999999999999999998 899999999999999999865
No 137
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.32 E-value=3.6e-12 Score=105.05 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=69.2
Q ss_pred cccceeeeeecceeeee-eccCCChHHHHHHHHHHhcCCCCCCCcEEEE---ECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 108 DLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~i-eV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li---~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
..|+|+|+. .|+++.+ +|++++||.+||++|++++|+| +++|+|+ |+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 358899995 7899999 9999999999999999999998 9999999 9999999999999999999999999765
Q ss_pred eC
Q 012653 184 KS 185 (459)
Q Consensus 184 ks 185 (459)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 33
No 138
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.32 E-value=6.7e-12 Score=104.85 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEEEe-C--CeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc--Ce---ecccCCccccccCccccc
Q 012653 27 EKLSNDSILIFLSV-G--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GR---ELARSNSRVRDYGLADGN 98 (459)
Q Consensus 27 ~~~~~~sM~I~Vtl-~--G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~--Gk---~L~~D~~tL~dygI~~gs 98 (459)
+......+.|+|+. . ++.+++++.+++||++||.+|+.++|+|+++|+|+|. |+ .|.+|+.+|++|+|++|+
T Consensus 9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gs 88 (95)
T 2kjr_A 9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGL 88 (95)
T ss_dssp CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSC
T ss_pred ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCC
Confidence 33357889999953 2 3589999999999999999999999999999999998 45 564589999999999999
Q ss_pred ceeee
Q 012653 99 VLHLV 103 (459)
Q Consensus 99 tl~Lv 103 (459)
+|||+
T Consensus 89 tihlv 93 (95)
T 2kjr_A 89 RLHVV 93 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 139
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.31 E-value=1.6e-13 Score=124.24 Aligned_cols=72 Identities=33% Similarity=0.479 Sum_probs=0.0
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
|+|+|++.+|+++.++|++++||.+||++|++.+|+| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 7899999999999999999999999999999999998 99999999999999999999999999999999986
No 140
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=6.3e-12 Score=103.58 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=68.3
Q ss_pred cccceeeeeecceeeeeeccCC-----ChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCC-CCcccccCCCCCCEEEEE
Q 012653 108 DLQAITVTTVCGKVFEFHVERG-----RNVGYVKQQIAKKGREFVDLKNQELICDGEELED-QRLITDICKRNEAVIHLL 181 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~-----~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD-~~tL~dy~I~~~svI~L~ 181 (459)
..|+|+|++ .|+.+.++|+++ .||.+||++|++..|+| +++|+|+|+|+.|+| ..+|.+|+|+++++|+|+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC--HHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 458899998 588899999995 99999999999999998 999999999999998 668999999999999998
Q ss_pred EeeCC
Q 012653 182 VRKSA 186 (459)
Q Consensus 182 vrks~ 186 (459)
.++..
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 76543
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=4.1e-12 Score=108.07 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=68.3
Q ss_pred CCCEEEEE-EeCC---eEEEEE--------eCCC-CCHHHHHHHHHHHh--CCCCcc-eEEEEcCeecccCCccccccCc
Q 012653 31 NDSILIFL-SVGG---SVIPMR--------VMES-DSIASVKLRIQSYN--GFFVKK-QKLVFEGRELARSNSRVRDYGL 94 (459)
Q Consensus 31 ~~sM~I~V-tl~G---~~~~l~--------V~~~-dTV~~LK~kIq~~~--Gip~~~-QrLvf~Gk~L~~D~~tL~dygI 94 (459)
...|+|+| ..++ +++.++ |.++ +||.+||.+|++++ |+++++ |+|+|.|+.|. |+.+|++|+|
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i 88 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI 88 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence 45699999 6677 789999 4454 99999999999999 999999 99999999997 8999999999
Q ss_pred ccccceeeeeecc
Q 012653 95 ADGNVLHLVLRLS 107 (459)
Q Consensus 95 ~~gstl~LvlrLs 107 (459)
+++++|||+.+..
T Consensus 89 ~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 89 QPGSTVHVLRKSW 101 (107)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998764
No 142
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.27 E-value=1e-11 Score=104.11 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCCCEEEEEEeC---CeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCe---e---cccCCccccccCcccccce
Q 012653 30 SNDSILIFLSVG---GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR---E---LARSNSRVRDYGLADGNVL 100 (459)
Q Consensus 30 ~~~sM~I~Vtl~---G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk---~---L~~D~~tL~dygI~~gstl 100 (459)
..+.+.|+|+.+ +..+++++.+++||++||.+|+.++|+|+++|+|+|.|+ . |.+|+.+|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 478899999543 347999999999999999999999999999999999884 3 5448999999999999999
Q ss_pred eeee
Q 012653 101 HLVL 104 (459)
Q Consensus 101 ~Lvl 104 (459)
||+-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9863
No 143
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.27 E-value=3.9e-13 Score=125.38 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=0.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccccc
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (459)
|+|+| +++|++++|+|++++||.+||.+|++.+|+|+++|+|+|+|++|+ |+.+|+ ++++|||+++++++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEEecCCCc
Confidence 89999 889999999999999999999999999999999999999999998 889998 899999999998874
No 144
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=106.25 Aligned_cols=88 Identities=10% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCCCEEEEEE-e-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 30 SNDSILIFLS-V-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 30 ~~~sM~I~Vt-l-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
.+..|.|.|. . .++.+++++.++.||.+||.+++.+.++|++.|+|+|+|+.|. |+.+|++|||+++.|+||+++-.
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEES
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEecC
Confidence 3556777763 3 5789999999999999999999999999999999999999998 89999999999999999999876
Q ss_pred cccceeeeeec
Q 012653 108 DLQAITVTTVC 118 (459)
Q Consensus 108 d~m~I~Vkt~~ 118 (459)
+.-.-=||+..
T Consensus 91 ~p~~~p~~~~~ 101 (118)
T 2daf_A 91 NPDLYPVRRID 101 (118)
T ss_dssp CTTTSCCCCCC
T ss_pred CCccCcceecc
Confidence 55444444433
No 145
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=5.3e-12 Score=106.47 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=68.4
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE--CCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~--~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
.|.+++++.+|+++.++|++++||++||++|++++|+| +++|+|++ .|+ |+|+++|++|+|+++++|||++....
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 47788888999999999999999999999999999999 99999986 666 99999999999999999999876444
No 146
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.25 E-value=8.8e-12 Score=102.26 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=62.6
Q ss_pred EEEEEE---eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE-------cCeecccCCccccccCcccccceeee
Q 012653 34 ILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-------EGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 34 M~I~Vt---l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf-------~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
++|.|+ ...+.+.+++++++||.+||.+|+.++|+|+++|+|+| .|+.|. |+.+|++|+|++|++|||+
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-NDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-CCCCHHHCCCCCCCEEEEE
Confidence 566674 34567899999999999999999999999999999996 588887 9999999999999999997
Q ss_pred ee
Q 012653 104 LR 105 (459)
Q Consensus 104 lr 105 (459)
-+
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 147
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.25 E-value=1.1e-11 Score=123.73 Aligned_cols=77 Identities=36% Similarity=0.632 Sum_probs=70.8
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
....|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|.|++|. |+.+|++|+|+++++|||++|++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 367899999 678999999999999999999999999999999999999999997 89999999999999999998863
No 148
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.24 E-value=7.9e-12 Score=102.54 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=60.8
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE-------CCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-------DGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~-------~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
...+.+.+.+++++||.+||++|+.++|+| +++|+|+| .|+.|+|+++|++|+|++|++|||+.+.+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 345667899999999999999999999999 99999997 47889999999999999999999987654
No 149
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1e-11 Score=102.18 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCCEEEEE-EeCCeEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCcceEEEEc--CeecccCCccccccCcccccceee
Q 012653 31 NDSILIFL-SVGGSVI--PM-RVMESDSIASVKLRIQSY-NGFFVKKQKLVFE--GRELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~--~l-~V~~~dTV~~LK~kIq~~-~Gip~~~QrLvf~--Gk~L~~D~~tL~dygI~~gstl~L 102 (459)
-..|+|+| ++.|+.+ ++ +|.+++||.+||.+|++. .|+++++|+|+|. |+.|. |+.+|++|+|.++++|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~-D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK-DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC-TTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC-CCCCHHHcCCCCCCEEEE
Confidence 34599999 8877664 68 999999999999999995 8999999999987 99997 899999999999998775
No 150
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=6.6e-12 Score=103.36 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=64.1
Q ss_pred ccceeeeeecceee--ee-eccCCChHHHHHHHHHHh-cCCCCCCCcEEEEEC--CEEcCCCCcccccCCCCCCEEEE
Q 012653 109 LQAITVTTVCGKVF--EF-HVERGRNVGYVKQQIAKK-GREFVDLKNQELICD--GEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~--~i-eV~~~~TV~~LK~kI~~~-~gip~~~~~Q~Li~~--Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
.|+|+|++..|+++ .+ +|++++||.+||++|+++ .+++ +++|+|+|. |+.|+|+++|++|+|+++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 38999999998876 48 999999999999999995 7888 999999976 99999999999999999999886
No 151
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.21 E-value=2.5e-11 Score=101.43 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=63.8
Q ss_pred ccccceeeeeecc--eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEEC--CE---Ec-CCCCcccccCCCCCCEE
Q 012653 107 SDLQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD--GE---EL-EDQRLITDICKRNEAVI 178 (459)
Q Consensus 107 sd~m~I~Vkt~~G--k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~--Gk---~L-eD~~tL~dy~I~~~svI 178 (459)
.+.+.|+|++..+ +.++++|++++||++||++|+..+|+| +++|+|+|. |+ .| +|+++|++|+|+++++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 4456777776554 588899999999999999999999999 999999997 45 55 99999999999999999
Q ss_pred EEE
Q 012653 179 HLL 181 (459)
Q Consensus 179 ~L~ 181 (459)
+|+
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 152
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=104.36 Aligned_cols=74 Identities=8% Similarity=0.131 Sum_probs=67.2
Q ss_pred cceeee-eecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVT-TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vk-t~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
+.|.|+ +..+..+.+.++++.||++||++++.+.++| +++|+|+|+|+.|.|+.||.+|+|+++.+|||+++..
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP--HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC--TTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC--hHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 445555 4567889999999999999999999999998 9999999999999999999999999999999988753
No 153
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.20 E-value=2.4e-11 Score=121.43 Aligned_cols=76 Identities=32% Similarity=0.455 Sum_probs=72.1
Q ss_pred cccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
..+.|+|+|++.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 45779999999999999999999999999999999999998 99999999999999999999999999999999876
No 154
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=8.8e-12 Score=103.84 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=65.2
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
.|+|+|+ ..|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+| .+|.+|+|+++++|+|+.++
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 4778888 578999999999999999999999999998 999999999999955 59999999999999997654
No 155
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.19 E-value=1.9e-12 Score=120.78 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
|+|+|+|++|++++++|++++||.+||++|+..+|+| +++|+|+|+|++|+|+++|+ ++++|||++|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE--IDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC--hhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 7899999999999999999999999999999999999 99999999999999999998 8899999987
No 156
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.18 E-value=2e-11 Score=125.00 Aligned_cols=79 Identities=23% Similarity=0.468 Sum_probs=70.1
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHH---HhCCCCcceEEEEcCeecccCCccccccCcccccce-eee
Q 012653 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL-HLV 103 (459)
Q Consensus 29 ~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~---~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl-~Lv 103 (459)
.....|+|+| ++.|+++.|+|.+++||.+||.+|+. +.|+++++|+|+|.|+.|. |+.+|.+|+|+++++| +|+
T Consensus 3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp ---CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred CCCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence 3567899999 77899999999999999999999999 5789999999999999998 8999999999999998 777
Q ss_pred eeccc
Q 012653 104 LRLSD 108 (459)
Q Consensus 104 lrLsd 108 (459)
.+..+
T Consensus 82 ~k~~~ 86 (368)
T 1oqy_A 82 TKTKA 86 (368)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 66654
No 157
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.18 E-value=2.9e-11 Score=123.79 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=68.0
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHH---hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEE-EEEEe
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK---KGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI-HLLVR 183 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~---~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI-~L~vr 183 (459)
..|+|+||+.+|+++.++|++++||.+||++|+. +.|++ +++|+|+|+|+.|+|+++|.+|+|+++++| +|+.|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 3599999999999999999999999999999999 56788 999999999999999999999999999999 55544
No 158
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.16 E-value=3.1e-11 Score=102.75 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCCEEEEE-EeCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCcceEEEEcCe-----------ec---ccCCccccccCc
Q 012653 31 NDSILIFL-SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGR-----------EL---ARSNSRVRDYGL 94 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~-~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk-----------~L---~~D~~tL~dygI 94 (459)
.+.|+|+| +.+|+. .++|+ +++||.+||.+|++++|+|++.|+|+|.|+ .| .+|+.+|++|||
T Consensus 5 ~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp CCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred CCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 45599999 778866 79999 999999999999999999999999999988 44 348999999999
Q ss_pred ccccceeeeee
Q 012653 95 ADGNVLHLVLR 105 (459)
Q Consensus 95 ~~gstl~Lvlr 105 (459)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 159
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.16 E-value=7.6e-11 Score=98.03 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=62.6
Q ss_pred CEEEEEEeCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC---ee---cccCCccccccCcccccceeeee
Q 012653 33 SILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---RE---LARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 33 sM~I~Vtl~G~--~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G---k~---L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+.|+|+-.+. .+++++.+++||++||.+|+.++|+|+++|+|+|.| +. |.+|+.+|.+|||+++++|||+-
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 47888855544 699999999999999999999999999999999986 43 43489999999999999999864
No 160
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.16 E-value=9.3e-11 Score=102.07 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=64.3
Q ss_pred CCCEEEEEEeCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC---e---ecccCCccccccCcccccceee
Q 012653 31 NDSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---R---ELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 31 ~~sM~I~Vtl~G~--~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G---k---~L~~D~~tL~dygI~~gstl~L 102 (459)
...|.|+|+-.+. .+++++.+++||++||.+|+.++|+|+++|+|+|.| + .|.+|+.+|.+|||++|++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 4568888854444 689999999999999999999999999999999987 4 3444899999999999999998
Q ss_pred ee
Q 012653 103 VL 104 (459)
Q Consensus 103 vl 104 (459)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 161
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=7.7e-11 Score=98.23 Aligned_cols=79 Identities=13% Similarity=0.288 Sum_probs=73.7
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
..+.|+|+| +.+|+.+.+.|.+++++..|+.+++++.|+++.+|+|+|+|+.|. ++.|+++|+++++++|++++++.+
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence 467899999 679999999999999999999999999999999999999999998 899999999999999999999887
Q ss_pred c
Q 012653 109 L 109 (459)
Q Consensus 109 ~ 109 (459)
+
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 6
No 162
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.11 E-value=8e-11 Score=98.70 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=61.4
Q ss_pred cceeeeeec--ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC---EE----cCCCCcccccCCCCCCEEEE
Q 012653 110 QAITVTTVC--GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 110 m~I~Vkt~~--Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G---k~----LeD~~tL~dy~I~~~svI~L 180 (459)
+.+.|++.. ++.++++|++++||++||++|+.++|+| +++|+|+|.| +. ++|+++|++|+|+++++|+|
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 455555433 3578899999999999999999999999 9999999987 33 49999999999999999999
Q ss_pred EEe
Q 012653 181 LVR 183 (459)
Q Consensus 181 ~vr 183 (459)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 163
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.08 E-value=5.6e-11 Score=101.14 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=66.6
Q ss_pred cceeeeeecceeeeeecc-CCChHHHHHHHHHHhcCCCCCCCcEEEEECCE-----------E----cCCCCcccccCCC
Q 012653 110 QAITVTTVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE-----------E----LEDQRLITDICKR 173 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~-~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk-----------~----LeD~~tL~dy~I~ 173 (459)
|.|.||+.+|+. .++|+ +++||.+||++|+.+++++ +++|+|+|.|+ . ++|+++|.+|+++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcC--cccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 889999999976 79999 9999999999999999998 99999999888 4 5899999999999
Q ss_pred CCCEEEEEEeeC
Q 012653 174 NEAVIHLLVRKS 185 (459)
Q Consensus 174 ~~svI~L~vrks 185 (459)
++++|||.....
T Consensus 85 ~G~~L~l~~~~~ 96 (107)
T 1wf9_A 85 HGSMVYLAYEGE 96 (107)
T ss_dssp TTCEEECCCSSC
T ss_pred CCCEEEEEeCCC
Confidence 999999976543
No 164
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=4.3e-10 Score=93.69 Aligned_cols=76 Identities=13% Similarity=0.268 Sum_probs=71.5
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
..|+|.|++.+|+++.++|.+++++..|+++++++.|++ +++++|+|+|+.|+++.|.++|+++++++|+++++..
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 458899999999999999999999999999999999998 8999999999999999999999999999999988643
No 165
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=3.1e-10 Score=94.31 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=61.0
Q ss_pred cceeeeeecc-eeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC---EE----cCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCG-KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~G-k~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G---k~----LeD~~tL~dy~I~~~svI~L~ 181 (459)
+.|.|+.... ..+.++|++++||++||++|+..+|+| +++|+|+|.| +. ++|+++|.+|+|+++++|||+
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 4455554333 268899999999999999999999999 9999999976 43 589999999999999999996
Q ss_pred Eee
Q 012653 182 VRK 184 (459)
Q Consensus 182 vrk 184 (459)
...
T Consensus 86 d~~ 88 (95)
T 1v6e_A 86 DHS 88 (95)
T ss_dssp CCS
T ss_pred ECC
Confidence 543
No 166
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.98 E-value=8.9e-10 Score=95.85 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=63.8
Q ss_pred cccceeeeeecce-eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC---E---E-cCCCCcccccCCCCCCEEE
Q 012653 108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---E---E-LEDQRLITDICKRNEAVIH 179 (459)
Q Consensus 108 d~m~I~Vkt~~Gk-~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G---k---~-LeD~~tL~dy~I~~~svI~ 179 (459)
+.+.|+|+...+. .+.+++++++||++||++|+..+|+| +++|+|+|.| + + ++|+++|.+|+|+++++||
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 3466667654432 67899999999999999999999999 9999999977 3 3 4899999999999999999
Q ss_pred EEEeeC
Q 012653 180 LLVRKS 185 (459)
Q Consensus 180 L~vrks 185 (459)
|+...+
T Consensus 83 vvd~~p 88 (122)
T 1t0y_A 83 AVDVTG 88 (122)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 987543
No 167
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=1.2e-09 Score=90.48 Aligned_cols=78 Identities=13% Similarity=0.298 Sum_probs=73.0
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.+.|+|.| +.+|+.+.+.|.+++++..|+...+++.|+++.+++|+|+|+.|. ++.|.++|+++++++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46799999 678999999999999999999999999999999999999999998 8899999999999999999988765
No 168
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.97 E-value=6.1e-10 Score=112.13 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=68.8
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE---EcCeecccCCccccccCcccccceeeeeecc
Q 012653 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
.+.|.|+|+.+|++++++|.+++||++||.+|++++|+|+++|+|+ |.|+.|. |+.+|++|+|++|++|+|+-...
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccch
Confidence 4678999988999999999999999999999999999999999999 8999998 89999999999999999987654
Q ss_pred c
Q 012653 108 D 108 (459)
Q Consensus 108 d 108 (459)
.
T Consensus 82 ~ 82 (320)
T 3shq_A 82 A 82 (320)
T ss_dssp -
T ss_pred h
Confidence 3
No 169
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.94 E-value=2.3e-09 Score=89.08 Aligned_cols=79 Identities=13% Similarity=0.298 Sum_probs=71.6
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
..+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++..++|+|+|+.|. ++.|..+|++.++++|++++++.+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeeccC
Confidence 367899999 678999999999999999999999999999999999999999998 899999999999999999998765
Q ss_pred c
Q 012653 109 L 109 (459)
Q Consensus 109 ~ 109 (459)
+
T Consensus 93 G 93 (93)
T 2d07_B 93 G 93 (93)
T ss_dssp -
T ss_pred C
Confidence 3
No 170
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.92 E-value=1.1e-09 Score=89.32 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=62.8
Q ss_pred cceeeeeecceeeeee-ccCCChHHHHHHHHHHhcCCCCCCCcEEEEEC--CEEcC---CCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICD--GEELE---DQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ie-V~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~--Gk~Le---D~~tL~dy~I~~~svI~L~vr 183 (459)
|+|.|++.+|+.. ++ +++++||.+||++|+++.|++ +++|+|+|+ ++.|+ |+.+|++|+++++++|++.-.
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 7899999999754 77 999999999999999999988 899999997 47774 789999999999999998533
No 171
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=3.5e-09 Score=87.68 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=71.9
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|.++|+++++++|+++++...
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 457899999999999999999999999999999999998 89999999999999999999999999999999876543
No 172
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.92 E-value=2.5e-09 Score=84.41 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=67.0
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|.++|+++++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999998 899999999999999999999999999999985
No 173
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.92 E-value=5.4e-09 Score=88.95 Aligned_cols=82 Identities=12% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCCCCCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 26 PEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 26 ~~~~~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
+.....+.|+|.| . +|+.+.+.|..++++..|+.+.+++.|+++..++|+|+|+.|. ++.|.++|+++++++|++++
T Consensus 24 ~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 24 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE
T ss_pred CCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEe
Confidence 3334578899999 7 9999999999999999999999999999999999999999998 89999999999999999998
Q ss_pred ecccc
Q 012653 105 RLSDL 109 (459)
Q Consensus 105 rLsd~ 109 (459)
++.++
T Consensus 102 ~q~GG 106 (106)
T 2eke_C 102 EQIGG 106 (106)
T ss_dssp CC---
T ss_pred ecccC
Confidence 87653
No 174
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.91 E-value=3.8e-09 Score=85.04 Aligned_cols=75 Identities=13% Similarity=0.286 Sum_probs=69.5
Q ss_pred CCCCCCEEEEE-EeCCe-EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeee
Q 012653 28 KLSNDSILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 28 ~~~~~sM~I~V-tl~G~-~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
|...+.|+|.| ..+|+ .+.+.|.+++++..|+...+++.|+++.+++|+|+|+.|. ++.|.++|+++++++|++.
T Consensus 2 p~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 2 PLGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TTCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred CCCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 34578899999 67885 8999999999999999999999999999999999999998 8999999999999999874
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.90 E-value=3.7e-09 Score=83.48 Aligned_cols=70 Identities=11% Similarity=0.313 Sum_probs=66.3
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeee
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
.|+|.| ..+|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|+.|. ++.|.++|++++|++|++.
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 388999 678999999999999999999999999999999999999999998 8899999999999999975
No 176
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.89 E-value=1.2e-09 Score=89.04 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=61.5
Q ss_pred EEEEE-EeCCeEEEEE-eCCCCCHHHHHHHHHHHhCCCCcceEEEEc--Ceecc--cCCccccccCcccccceeeeee
Q 012653 34 ILIFL-SVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA--RSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~-V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~--Gk~L~--~D~~tL~dygI~~gstl~Lvlr 105 (459)
|+|+| +.+|+. .+. +.+++||.+||.+|++++|++++.|+|+|+ ++.|. +++.+|++|||.+|++|++.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999 667755 477 999999999999999999999999999987 47773 3678999999999999998654
No 177
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=3.1e-09 Score=90.14 Aligned_cols=79 Identities=13% Similarity=0.300 Sum_probs=74.2
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
..+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++..++|+|+|+.|. ++.|..+|+++++++|++++++.+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence 467899999 678999999999999999999999999999999999999999998 899999999999999999998876
Q ss_pred c
Q 012653 109 L 109 (459)
Q Consensus 109 ~ 109 (459)
+
T Consensus 100 G 100 (104)
T 1wz0_A 100 G 100 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 178
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.86 E-value=4.7e-09 Score=89.88 Aligned_cols=80 Identities=10% Similarity=0.245 Sum_probs=74.8
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
..+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+|+|+|.|+.|. ++.|.++|+++++++|++++.+.+
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEcccC
Confidence 467899999 778999999999999999999999999999999999999999998 889999999999999999998887
Q ss_pred cc
Q 012653 109 LQ 110 (459)
Q Consensus 109 ~m 110 (459)
++
T Consensus 102 g~ 103 (110)
T 2k8h_A 102 GL 103 (110)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 179
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.84 E-value=7.7e-09 Score=83.20 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=68.2
Q ss_pred ccccceeeeeecce-eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 107 SDLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk-~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
+..|.|.|++.+|+ .+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|.++|+++++++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34588999999996 89999999999999999999999998 899999999999999999999999999999974
No 180
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.82 E-value=1e-08 Score=85.12 Aligned_cols=76 Identities=13% Similarity=0.266 Sum_probs=70.8
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|+++++.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 3457888998899999999999999999999999999998 899999999999999999999999999999998764
No 181
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.80 E-value=9.1e-09 Score=85.62 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred CCCEEEEEE----eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcC-------eecccCCccccccCcccccc
Q 012653 31 NDSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNV 99 (459)
Q Consensus 31 ~~sM~I~Vt----l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~G-------k~L~~D~~tL~dygI~~gst 99 (459)
...+.|+|+ .+++.+...+.++.||.+||.+|++.+|+|+..|+|+|.+ ..|.+|..+|.+|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 556777774 4678899999999999999999999999999999999873 23767899999999999999
Q ss_pred eeeeee
Q 012653 100 LHLVLR 105 (459)
Q Consensus 100 l~Lvlr 105 (459)
||+...
T Consensus 87 I~V~d~ 92 (97)
T 1wjn_A 87 LLVRWS 92 (97)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 998753
No 182
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.80 E-value=3.3e-09 Score=106.80 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=66.1
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE---ECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li---~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
.+.|+|+ .+|+++.++|++++||++||++|++++|+| +++|+|+ |+|+.|+|+.+|++|+|++|++|+|+-...
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 3677888 489999999999999999999999999999 9999999 899999999999999999999999976544
Q ss_pred Cc
Q 012653 186 AK 187 (459)
Q Consensus 186 ~k 187 (459)
+.
T Consensus 82 ~~ 83 (320)
T 3shq_A 82 AD 83 (320)
T ss_dssp --
T ss_pred hh
Confidence 43
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.75 E-value=2.1e-08 Score=85.26 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=70.4
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
...|.|.|++ +|+.+.+.|.+++++..|++..+++.|++ +.+++|+|+|+.|.+..|.++|+++++++|+++++.
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 3558899999 99999999999999999999999999998 899999999999999999999999999999998764
No 184
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=1.1e-08 Score=86.79 Aligned_cols=77 Identities=13% Similarity=0.269 Sum_probs=71.4
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
...|.|.|++.+|+.+.+.|.+++++..|++.++++.|++ +++++|+|+|+.|.+..|..+|+++++++|+++++..
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 3458889999999999999999999999999999999998 8999999999999999999999999999999987643
No 185
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.68 E-value=1.4e-08 Score=87.02 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=72.3
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|++++....
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 4568899999999999999999999999999999999998 89999999999999999999999999999999876443
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.64 E-value=7e-08 Score=80.20 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=61.4
Q ss_pred cceeeee---ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC-------EEc-CCCCcccccCCCCCCEE
Q 012653 110 QAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-------EEL-EDQRLITDICKRNEAVI 178 (459)
Q Consensus 110 m~I~Vkt---~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G-------k~L-eD~~tL~dy~I~~~svI 178 (459)
+.|.|+. .+|+.+...+.++.||++||.+|+..+|+| +..|+|+|.+ ..| +|.++|.+|++++|++|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 4455543 467888899999999999999999999999 9999999863 335 78899999999999999
Q ss_pred EEEEee
Q 012653 179 HLLVRK 184 (459)
Q Consensus 179 ~L~vrk 184 (459)
|+....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 997643
No 187
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.3e-06 Score=80.35 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=74.1
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
..+.|+|.|..+|+.+.+.|.+++++..|+...+++.|+++.++|++|+|+.|. ++.|.+++++.+|++|++++.+.++
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCcC
Confidence 478899999779999999999999999999999999999999999999999998 8999999999999999999988544
No 188
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=2.6e-06 Score=73.28 Aligned_cols=75 Identities=12% Similarity=0.237 Sum_probs=69.6
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
+.+.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +.+++++|+|+.|.+..|..+++++++++|++++..
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC--hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 457788888889999999999999999999999999988 999999999999999999999999999999998754
No 189
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.23 E-value=3e-06 Score=72.90 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=68.7
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
.+.|+|.| ..+|+.+.+.|..++++..|+...+++.|+++..++|+|+|+.|. ++.|.+++++.++++|++.+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEee
Confidence 57888988 678899999999999999999999999999999999999999998 899999999999999998764
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.7e-06 Score=79.06 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=74.5
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccccc
Q 012653 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (459)
.+.|.|.|..+|+.+.+.|..++++..|+...+++.|+++..++++|+|+.|. ++.|..++++.++++|++++...++.
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 66789999778999999999999999999999999999999999999999998 89999999999999999999988774
No 191
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.96 E-value=2e-05 Score=74.07 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=70.0
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
...++|.|+ .+|+.+.+.|.+++++..|++..+++.|++ +.+++++|+|+.|.+..|..+++++++++|++++..-+
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 445677776 489999999999999999999999999998 99999999999999999999999999999999887544
No 192
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.88 E-value=1.7e-06 Score=81.42 Aligned_cols=82 Identities=11% Similarity=0.183 Sum_probs=1.1
Q ss_pred CCCCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecc
Q 012653 28 KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (459)
Q Consensus 28 ~~~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (459)
+...+.|+|.|..+|+.+.+.|..++.+..|+...+++.|+++..++++|+|+.|. ++.|.+++++++|++|++++...
T Consensus 16 ~~p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEeccc
Confidence 33478899999778999999999999999999999999999999999999999998 89999999999999999998887
Q ss_pred ccc
Q 012653 108 DLQ 110 (459)
Q Consensus 108 d~m 110 (459)
++.
T Consensus 95 GG~ 97 (227)
T 3v7o_A 95 GGL 97 (227)
T ss_dssp -CC
T ss_pred CCc
Confidence 764
No 193
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=97.88 E-value=5.6e-06 Score=83.34 Aligned_cols=137 Identities=19% Similarity=0.212 Sum_probs=86.1
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCCCCCCcCCCCCCCCCCCCCcccCCccCCCchhhheeeeeeccCCCCcccccc
Q 012653 274 PSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHD 353 (459)
Q Consensus 274 ~~~~gs~g~y~~~~~~g~~~~~vfKP~deEp~~~~nP~~~~~~~~~~~~~~~~~~g~~~~rEvaAylld~~~~~~~~~~~ 353 (459)
++..|++|.||+... + ...|.|+.. + -..|+=||.|-
T Consensus 76 ~s~~Gstgvff~~td-~--~~~VVK~s~------------------------~-----l~~E~l~s~LA----------- 112 (342)
T 1cja_A 76 RSEKGTEGLFFVETE-S--GVFIVKRST------------------------N-----IESETFCSLLC----------- 112 (342)
T ss_dssp ECCSTTSCEEEEEES-S--CEEEEECCT------------------------T-----HHHHHHHHHHH-----------
T ss_pred eccCCCCCeEEEEeC-C--CEEEEeCcH------------------------H-----HHHHHHHHHHH-----------
Confidence 678999999999983 3 388889662 1 37788888887
Q ss_pred cccCCCCCCceEEEEeccccc---------cCCCCCCCCCCCc-ceeeEeeeecCcC--Ccc-cCCCCCCChh---hhhh
Q 012653 354 EERGFAGVPPTVMVRCLHKGF---------NHPNGYKHDLENV-KIGSLQMFVENVG--SCE-EMGPRAFPVD---EVHK 417 (459)
Q Consensus 354 ~~~g~~~VP~T~~v~~~~~~f---------~~~~~~~~~~~~~-k~GSlQ~fv~~~~--~~~-~~~~~~f~~~---ev~k 417 (459)
..+|. -+|...+++...+.| ....+..-..+.. ...=++.|+++.. +.. ......|..+ ++-|
T Consensus 113 ~~LGl-piP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~~~k~LG~ 191 (342)
T 1cja_A 113 MRLGL-HAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKSTMQQLGS 191 (342)
T ss_dssp HHHTC-CCCCEEEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHHHHHHHHH
T ss_pred HHhCC-CCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCHHHHHhhch
Confidence 47886 789999998774321 0110000000000 1223577777543 110 0011224333 3457
Q ss_pred eeeecEEeecCCCC---------CCcEEEecCCCCceEEEeeecCCcCC
Q 012653 418 ISVLDIRLANTDRH---------AGNILVSKDEGGQIKLVPIDHGYCLP 457 (459)
Q Consensus 418 i~ilD~~~~N~DR~---------~gNiLv~~~~~~~~~l~~IDhg~~~P 457 (459)
|.+||+.++|.||- .+|||+..+ ++ ++++|||+.||-
T Consensus 192 Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~-n~--~~~~IDhn~af~ 237 (342)
T 1cja_A 192 LMALDVIVNNSDRLPIAWTNEGNLDNIMLSER-GA--TVVPIDSKIIPL 237 (342)
T ss_dssp HHHHHHHHTCCSSSCSSSCSCCCGGGEEEESB-TT--CEEECSCCCCCC
T ss_pred hheehhhhcCCccCcccccCCCChhheEEeCC-CC--eEEEEcCCcccc
Confidence 99999999999996 347798875 23 699999999974
No 194
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.4e-05 Score=72.66 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=70.0
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
.+.+.|.|+ .+|+.+.+.|.+++++..|++..+++.|++ +.+++++|+|+.|.+..|..+++++++++|++++....
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 344667776 489999999999999999999999999988 89999999999999999999999999999999877554
Q ss_pred c
Q 012653 187 K 187 (459)
Q Consensus 187 k 187 (459)
.
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 3
No 195
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.79 E-value=3.6e-05 Score=63.79 Aligned_cols=60 Identities=13% Similarity=0.250 Sum_probs=48.1
Q ss_pred EEEEE-Ee-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeeccc-CCccccccC
Q 012653 34 ILIFL-SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR-SNSRVRDYG 93 (459)
Q Consensus 34 M~I~V-tl-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~-D~~tL~dyg 93 (459)
.-|+| .+ .+..+.+.+.+++||..+|++|++++||++.+|+|+|.|+.|.= .+.....|.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 44566 43 67889999999999999999999999999999999999977541 344444553
No 196
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.74 E-value=1.8e-05 Score=63.62 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=58.4
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEE-----cCCCCcccccCCCCCCEEEE
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-----LEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~-----LeD~~tL~dy~I~~~svI~L 180 (459)
..|.|-||+.+| ++.+++++++|+.+|+++|+++.+++ .+.|.|+++-.. +..+.+|++++++.|+.|++
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEE
Confidence 347788888877 67899999999999999999999987 677777765544 34788999999999999986
No 197
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.71 E-value=2.2e-05 Score=63.07 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=59.3
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCee-----cccCCccccccCcccccceeee
Q 012653 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-----LARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 32 ~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-----L~~D~~tL~dygI~~gstl~Lv 103 (459)
+.|.|.|....-++.+++++++|+.+|+.+|+++.+++...|.++++-.+ +. .+.+|++.||..|++|.+.
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEe
Confidence 56888995555588899999999999999999999999999888765544 33 6789999999999998875
No 198
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.59 E-value=0.0025 Score=64.56 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=96.7
Q ss_pred CEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhC----CCCcceEEEEc------CeecccCCccccccCcccccceee
Q 012653 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNG----FFVKKQKLVFE------GRELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 33 sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~G----ip~~~QrLvf~------Gk~L~~D~~tL~dygI~~gstl~L 102 (459)
++.+.|.+.+.+-+|..+++.||.++-.+|.++.. .+..+--|... |+=|. ++++|..|+++++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeec
Confidence 35556655588899999999999999999988863 24666677762 34476 678999999999998776
Q ss_pred eeecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEEC
Q 012653 103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (459)
Q Consensus 103 vlrLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~ 157 (459)
..+ .+.+.|...+|....+.|+.+.|+.++=+.|+...|+. ..+.-.|++.
T Consensus 82 ~~~---~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~ 132 (371)
T 3ivf_A 82 RKK---QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRE 132 (371)
T ss_dssp EEC---EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS-CGGGEEEECC
T ss_pred cCc---eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CccccEEEEE
Confidence 543 36788888999999999999999999999999999987 3667777764
No 199
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.54 E-value=0.00024 Score=58.88 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=51.4
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEc--CCCCcccccC-CCCCCEEEEEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL--EDQRLITDIC-KRNEAVIHLLV 182 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~L--eD~~tL~dy~-I~~~svI~L~v 182 (459)
..+..+.+.+++.+||..+|++|++++||+ +.+|+|+|.|+.| +..+....|. -.....|.|+-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCC--HHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 356788899999999999999999999999 9999999999775 4555566665 34556666644
No 200
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.53 E-value=0.0004 Score=55.33 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=62.9
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCC-cEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~-~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
+.+.+++.....+.+.|.++.+|..|-+.-+.+.+|+ ++ ..+|.|.|..|+.+.++.||.+++++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCC--cCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3445566666778999999999999999999999998 66 99999999999999999999999999999864
No 201
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.50 E-value=0.00038 Score=65.61 Aligned_cols=97 Identities=16% Similarity=0.248 Sum_probs=80.8
Q ss_pred CCCCCCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeee
Q 012653 26 PEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 26 ~~~~~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
|.+.+.+.|.|.|.-+++.+.+.|..++++..|+...+++.|+++.+++++|.|+.+. ++.+..+..+.++++|.+..+
T Consensus 14 ~~~~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 14 PEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp ----CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECS
T ss_pred ceeCCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhcc
Confidence 3445689999999448889999999999999999999999999999999999999998 899999999999999999998
Q ss_pred cccccceeeeeecceeeee
Q 012653 106 LSDLQAITVTTVCGKVFEF 124 (459)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~i 124 (459)
..++.. ++.+.+|-.+.+
T Consensus 93 q~Gg~t-~~~~~sGl~~~v 110 (209)
T 3uf8_A 93 QIGGST-VVTTESGLKYED 110 (209)
T ss_dssp CTTCCC-CEECTTSCEEEE
T ss_pred cccccc-ccCCCCceEEEE
Confidence 887653 334555554443
No 202
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.45 E-value=1.8e-05 Score=74.50 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=0.4
Q ss_pred ecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 105 rLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
...+.|.|.| +.+|+.+.++|.++++...|++..+++.|++ +++++++|+|+.+.+..|.++++++++++|+++...
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 3455688888 7799999999999999999999999999988 899999999999999999999999999999998775
Q ss_pred CCc
Q 012653 185 SAK 187 (459)
Q Consensus 185 s~k 187 (459)
.+.
T Consensus 94 ~GG 96 (227)
T 3v7o_A 94 IGG 96 (227)
T ss_dssp --C
T ss_pred cCC
Confidence 543
No 203
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.35 E-value=0.00086 Score=53.44 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=60.8
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCc-ceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 34 M~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~-~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
|.+.+ .....-+.+.|.++.+|.+|-..-+.+.||+++ ..+|.|.|..|. .+.++.+|++.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence 33444 334456889999999999999999999999999 899999999997 99999999999999988765
No 204
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.24 E-value=0.00096 Score=55.57 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=64.5
Q ss_pred cccceeeeeecce-eeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 108 d~m~I~Vkt~~Gk-~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
..+.|.|+..+|+ .+.+.|.++++...|...-+++.|++ +...+++|+|..|....|..+++++++++|.+.
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4466777777784 78999999999999999999999988 889999999999999999999999999999874
No 205
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.20 E-value=4.4e-05 Score=77.56 Aligned_cols=85 Identities=11% Similarity=0.189 Sum_probs=3.7
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
..+.|.|.|.-+|+.+.+.|..++++..|+...+++.|+++..++++|+|+.|. ++.|.+++++++|++|++.....++
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhccCch
Confidence 367888888437889999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred cceeee
Q 012653 110 QAITVT 115 (459)
Q Consensus 110 m~I~Vk 115 (459)
|..+..
T Consensus 97 ~~~Yl~ 102 (360)
T 3ix6_A 97 MRTYLD 102 (360)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 876643
No 206
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.17 E-value=0.0015 Score=61.61 Aligned_cols=82 Identities=10% Similarity=0.176 Sum_probs=70.6
Q ss_pred eeecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 103 vlrLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
++...+.+.|.|++ +|+.+.+.|.++++...|++..+++.|++ +++++++|+|+.+.+..|-.+...+++++|++..
T Consensus 15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCC--hheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 33445567777876 78888999999999999999999999998 9999999999999999999999999999999987
Q ss_pred eeCCc
Q 012653 183 RKSAK 187 (459)
Q Consensus 183 rks~k 187 (459)
.....
T Consensus 92 eq~Gg 96 (209)
T 3uf8_A 92 EQIGG 96 (209)
T ss_dssp SCTTC
T ss_pred ccccc
Confidence 65543
No 207
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.15 E-value=0.0016 Score=54.29 Aligned_cols=73 Identities=11% Similarity=0.292 Sum_probs=65.8
Q ss_pred CCCCEEEEE-EeCCe-EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeee
Q 012653 30 SNDSILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~-~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (459)
..+.|.|.| ..+|+ .+.+.|..+.++..|...-+++.|+++..-+++|+|..|. .+.|..+.+++++++|.+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 467788888 55774 8999999999999999999999999999999999999998 8899999999999998763
No 208
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.97 E-value=0.0049 Score=50.93 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeee
Q 012653 28 KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 28 ~~~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
+...+.|.|.|.-.|....+.+..++....|...-+++.|+++...++.|.|..+. ++.|-.+.+++++++|.+++
T Consensus 16 ~~~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 16 PETPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CSCCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEE
T ss_pred CCCCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEE
Confidence 33477799999768899999999999999999999999999999999999999998 89999999999999998765
No 209
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.90 E-value=0.0031 Score=51.63 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=67.7
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrk 184 (459)
.++|.|+|-..+++..++.|.++.++.++-+.-.+++|+. +++..|.|+++.|+-...+.-.|+.+++.+.|+...
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 4678899998999999999999999999999999999987 889999999999998999999999999999997553
No 210
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.77 E-value=0.005 Score=50.88 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=66.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks 185 (459)
+.|.|+ .+|..+.+.|.+++....|.+..+++.|+. +...++.|+|..+.+..|-.+++++++++|..++-++
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~~ 94 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVS--PSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTS 94 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEecC
Confidence 566666 468899999999999999999999999988 9999999999999999999999999999999987655
No 211
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.64 E-value=0.0003 Score=72.05 Aligned_cols=85 Identities=11% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
..+.|.|.|.-+++.+.+.|..++++..|+...+++.|+++.+++++|+|+.|. ++.|.++++++++++|++.+...++
T Consensus 27 ~~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeeccccc
Confidence 356777777337888999999999999999999999999999999999999998 8999999999999999999888877
Q ss_pred cceeee
Q 012653 110 QAITVT 115 (459)
Q Consensus 110 m~I~Vk 115 (459)
....+.
T Consensus 106 ~n~~~~ 111 (389)
T 4da1_A 106 ENLYFQ 111 (389)
T ss_dssp ------
T ss_pred ccccee
Confidence 655543
No 212
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.57 E-value=0.00036 Score=70.85 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred eecccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 104 lrLsd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
......+.|.|++ +|+.+.+.|.++++...|++..+++.|++ ++++++.|+|+.|.++.|.++++++++++|+++..
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC--cceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 3345567788876 68889999999999999999999999988 89999999999999999999999999999999877
Q ss_pred eCCc
Q 012653 184 KSAK 187 (459)
Q Consensus 184 ks~k 187 (459)
....
T Consensus 93 Q~g~ 96 (360)
T 3ix6_A 93 QIGG 96 (360)
T ss_dssp ----
T ss_pred cCch
Confidence 5553
No 213
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.56 E-value=0.0035 Score=51.35 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=66.3
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
...|.|.| ..+++..++.|.|+.++.++-++..+++|+.+++-.|.|+++.|+ -..+++-.||.+++.+.|+.+-
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEcc
Confidence 55678888 678999999999999999999999999999999999999999996 8899999999999999987643
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.39 E-value=0.0029 Score=55.23 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=57.7
Q ss_pred ceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE----------------------------------
Q 012653 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---------------------------------- 156 (459)
Q Consensus 111 ~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~---------------------------------- 156 (459)
.+.|+.++|...++.|+.+.+|..++..|+.+.|+.. .++..|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n-~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN-HDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCC-CSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCC-cccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 5789999999999999999999999999999999872 32333331
Q ss_pred ----CCEEcCCCCcccccCCCCCCEEEEE
Q 012653 157 ----DGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 157 ----~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.+..|++.++|.++||.++++|.|.
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 2367889999999999999997653
No 215
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=96.25 E-value=0.00065 Score=68.19 Aligned_cols=45 Identities=31% Similarity=0.418 Sum_probs=35.8
Q ss_pred hhhhheeeecEEeecCCCCCCcEEEecCCC-CceEEEe-eecCCcCC
Q 012653 413 DEVHKISVLDIRLANTDRHAGNILVSKDEG-GQIKLVP-IDHGYCLP 457 (459)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~-~~~~l~~-IDhg~~~P 457 (459)
+++-++.+||++|+|+|||+.||=+-.+.+ |.+.|.| .|||.++-
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~~~tg~~~LAP~YD~~~s~~ 185 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSCLY 185 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEESSSSCEEECCBCCCTTSSC
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEECCCCCEEecCccccccccc
Confidence 457799999999999999999985444433 6688888 59998763
No 216
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.85 E-value=0.018 Score=46.22 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=57.4
Q ss_pred CCEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCc-----ceEEEEcCeecccCCccccccCcccccceee
Q 012653 32 DSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVK-----KQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (459)
Q Consensus 32 ~sM~I~Vtl---~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~-----~QrLvf~Gk~L~~D~~tL~dygI~~gstl~L 102 (459)
..|.|++.+ .++++-+++.-..||..|+..+.+..+++.. ..++.-.+..|. ++..|.||+|.+|+.+.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence 346666655 7899999999999999999999999988752 235555678887 899999999999998754
No 217
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.74 E-value=0.0017 Score=66.49 Aligned_cols=78 Identities=10% Similarity=0.184 Sum_probs=0.0
Q ss_pred ccccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
.+.+.|.|++ +|..+.+.|.++++...|++..+++.|++ +.+++++|+|+.|.+..|-.+++++++++|++.+....
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 3456677776 77888899999999999999999999988 99999999999999999999999999999999876444
Q ss_pred c
Q 012653 187 K 187 (459)
Q Consensus 187 k 187 (459)
.
T Consensus 105 g 105 (389)
T 4da1_A 105 G 105 (389)
T ss_dssp -
T ss_pred c
Confidence 3
No 218
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.51 E-value=0.0097 Score=51.89 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=55.6
Q ss_pred EEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------------------------------ceEEE
Q 012653 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-------------------------------------KQKLV 76 (459)
Q Consensus 35 ~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~-------------------------------------~QrLv 76 (459)
-|.| .++|+..++.|+.+.+|.+++..|+.+.||+.. +|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 5677 568999999999999999999999999999854 34442
Q ss_pred E--cCeecccCCccccccCcccccceeeeee
Q 012653 77 F--EGRELARSNSRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 77 f--~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (459)
. ...-|. +..+|.++||.++++|.|.-+
T Consensus 93 ~dd~~~WLD-~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLD-HGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence 2 124454 789999999999999877544
No 219
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.14 E-value=0.043 Score=44.04 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=55.3
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCC---CcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---KNQELICDGEELEDQRLITDICKRNEAVIHL 180 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~---~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L 180 (459)
..++++-+.+....||..|++.+.+.+++..+. .+.++.-.+..|.+...|.||++.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 468899999999999999999999999876322 3456777899999999999999999999875
No 220
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.13 E-value=0.13 Score=45.20 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=53.7
Q ss_pred CCCCEEEEE-EeC------CeEEEEEeCCCCCHHHHHHHHHHH--hCCCCc------ceEEEE----cCee-cccCC---
Q 012653 30 SNDSILIFL-SVG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF----EGRE-LARSN--- 86 (459)
Q Consensus 30 ~~~sM~I~V-tl~------G~~~~l~V~~~dTV~~LK~kIq~~--~Gip~~------~QrLvf----~Gk~-L~~D~--- 86 (459)
.-..|.|+| ... ...+++.|...|||.++|+||-.. .|+|.. ..-|-+ .|+. |.+.+
T Consensus 21 ey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 21 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp -CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcc
Confidence 367788887 321 256999999999999999999987 466543 234544 1332 54211
Q ss_pred ---------ccccccCcccccceeeeeeccc
Q 012653 87 ---------SRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 87 ---------~tL~dygI~~gstl~LvlrLsd 108 (459)
.||+.|+|.+|+++-|+.+.+.
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~ 131 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATVALVPCLTK 131 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred cccCCceeecchhccCCCCCCEEEEEECCCc
Confidence 2799999999999999887654
No 221
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.03 E-value=0.27 Score=41.30 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=63.4
Q ss_pred CCCCCCCCEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeecc--cCCccccccCcccccce
Q 012653 26 PEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVL 100 (459)
Q Consensus 26 ~~~~~~~sM~I~Vt-l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstl 100 (459)
|........+|-|. .+|+.+.-....++||.+|..-|....+.+.....|+ |-.+.+. +.+.+|++.|+...++|
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L 85 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASV 85 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEE
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEE
Confidence 34444667888895 4789999999999999999999999988776667777 5677776 35789999999998887
Q ss_pred eeee
Q 012653 101 HLVL 104 (459)
Q Consensus 101 ~Lvl 104 (459)
.+..
T Consensus 86 ~v~~ 89 (109)
T 2dzk_A 86 VLLP 89 (109)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.53 E-value=0.28 Score=38.96 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCCCEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeecc--cCCccccccCcccccceeeee
Q 012653 30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 30 ~~~sM~I~Vt-l~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstl~Lvl 104 (459)
+....+|-|. .+|+.+.-....++||.+|..-|.. .+.+.....|+ |-.+.|. +.+.+|++.|+...++|.+-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 3556678884 4788888899999999999999998 67777788888 5578884 467899999999998887653
No 223
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.26 E-value=0.18 Score=42.79 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=50.4
Q ss_pred CCCEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHH--hCCCCc------ceEEEEc----CeecccCC---------
Q 012653 31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVFE----GRELARSN--------- 86 (459)
Q Consensus 31 ~~sM~I~Vtl---~G~~~~l~V~~~dTV~~LK~kIq~~--~Gip~~------~QrLvf~----Gk~L~~D~--------- 86 (459)
..+|.++|.. .+..+++.|...|||.++|+||-.. .|+|.. ...|-+. |+.|.+.+
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 4566777732 2456899999999999999999877 355543 3446652 45565311
Q ss_pred ---ccccccCcccccceeeeee
Q 012653 87 ---SRVRDYGLADGNVLHLVLR 105 (459)
Q Consensus 87 ---~tL~dygI~~gstl~Lvlr 105 (459)
.||+.|+|.+|+++-|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3688999999999987654
No 224
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=92.86 E-value=0.22 Score=39.59 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=53.8
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~L---eD~~tL~dy~I~~~svI~L~ 181 (459)
.+|-||..+|+.+.-....++||.+|.+-|.. .+.. .....|+ |-.+.| +...+|.|.++.+.++|.+-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 45667777787777777789999999999988 4444 6777887 446778 45789999999999998873
No 225
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=91.55 E-value=0.57 Score=39.66 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=46.5
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCEEcCCC-------------CcccccCCCCC
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEELEDQ-------------RLITDICKRNE 175 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~--gip~----~~~~Q~Li~----~Gk~LeD~-------------~tL~dy~I~~~ 175 (459)
+..+.+.|-..+||..+|+||-... |.|. .+++..|-+ .|+.|.|. +||..|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4567788889999999999997764 4442 256777887 35666552 68899999999
Q ss_pred CEEEEEE
Q 012653 176 AVIHLLV 182 (459)
Q Consensus 176 svI~L~v 182 (459)
+++-|+-
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998854
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=90.97 E-value=0.85 Score=39.15 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=59.9
Q ss_pred CCCCEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeec--ccCCccccccCcccccceeee
Q 012653 30 SNDSILIFLSV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGREL--ARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 30 ~~~sM~I~Vtl-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L--~~D~~tL~dygI~~gstl~Lv 103 (459)
.....+|-|.+ +|..+.-....++||.+|..-|... +.+.....|+ |-.+.| .+.+.+|++.|+....+|.+.
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 36678888855 7888999999999999999999887 7776777787 568888 445799999999988877664
No 227
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.51 E-value=1.1 Score=42.03 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCc-ceEEEE-c----CeecccCCccccccCcccccceeeeeecccc
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.+++.++..+||.+|++++.+..+++.+ +-||-. . ...|.+.+.+|.+++|.++..|.+-++-.|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4678889999999999999999999987 577762 2 2446544679999999999998888776654
No 228
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.21 E-value=0.86 Score=43.17 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=54.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCc-ceEEEE-c----CeecccCCccccccCcccccceeeeeecccc
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.+++.++..+||.+|++++.+.++++.+ +-||-. . -..|.+.+.+|.+++|.++..|.+-++-.|+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999987 578774 3 2346645689999999999999888876665
No 229
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.06 E-value=1.1 Score=38.84 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=50.1
Q ss_pred cceeeeeeccCCChHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCEE-cCCC-------------CcccccCCC
Q 012653 118 CGKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEE-LEDQ-------------RLITDICKR 173 (459)
Q Consensus 118 ~Gk~~~ieV~~~~TV~~LK~kI~~~~--gip~----~~~~Q~Li~----~Gk~-LeD~-------------~tL~dy~I~ 173 (459)
.+..+.+.|-..+||.++|+||-... +.|. .+++..|-+ .|+. |.|. +||..|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34567888889999999999997764 4432 257788887 3443 6541 689999999
Q ss_pred CCCEEEEEEeeC
Q 012653 174 NEAVIHLLVRKS 185 (459)
Q Consensus 174 ~~svI~L~vrks 185 (459)
+|+++-|+.+.+
T Consensus 95 dgatv~l~~~~~ 106 (127)
T 3h6n_A 95 EGASLAMSLIDK 106 (127)
T ss_dssp TTCEEEEEECC-
T ss_pred CCCEEEEEEccc
Confidence 999999976543
No 230
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=89.91 E-value=0.94 Score=37.84 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=61.6
Q ss_pred CCCCCCCCCCEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEE--EcCeecc-cCCccccccCcccccc
Q 012653 24 HRPEKLSNDSILIFLSV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA-RSNSRVRDYGLADGNV 99 (459)
Q Consensus 24 ~~~~~~~~~sM~I~Vtl-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~-~D~~tL~dygI~~gst 99 (459)
.+|........+|-|.+ +|+.+.-+...++||.+|..-|... +.......|+ |-.+.|. +.+.+|++.|+....+
T Consensus 14 ~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~ 92 (109)
T 2cr5_A 14 EEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTV 92 (109)
T ss_dssp CCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEE
T ss_pred CCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeE
Confidence 44544446778888854 7888888999999999999999965 5555666776 5578886 4679999999999888
Q ss_pred eeeee
Q 012653 100 LHLVL 104 (459)
Q Consensus 100 l~Lvl 104 (459)
|.+..
T Consensus 93 L~Ve~ 97 (109)
T 2cr5_A 93 LNVEE 97 (109)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 86644
No 231
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=89.47 E-value=1 Score=39.47 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=48.7
Q ss_pred eeeeeeccCCChHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~--gip~----~~~~Q~Li~----~Gk-~LeD~-------------~tL~dy~I~~~ 175 (459)
..+.+.|-..+||.++|+||-.+. |.|. .+++.-|-+ .|+ .|.|. .||..|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 567889999999999999998774 4432 355667766 344 36553 48999999999
Q ss_pred CEEEEEEeeCC
Q 012653 176 AVIHLLVRKSA 186 (459)
Q Consensus 176 svI~L~vrks~ 186 (459)
+++.|+-+.+.
T Consensus 121 a~l~l~~~~~~ 131 (138)
T 2r2o_A 121 ATVALVPCLTK 131 (138)
T ss_dssp CEEEEEEC---
T ss_pred CEEEEEECCCc
Confidence 99999766543
No 232
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=89.30 E-value=0.84 Score=38.23 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=55.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC---CCCcccccCCCCCCEEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~Le---D~~tL~dy~I~~~svI~L~v 182 (459)
.+|.||..+|+.+.-....++||.+|.+-|....+.+ .....|+ |--+++. ..++|.|.++.+.++|++..
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4567777788888878889999999999999886544 4555665 5567775 37899999999998888754
No 233
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=89.19 E-value=0.79 Score=39.38 Aligned_cols=72 Identities=8% Similarity=-0.002 Sum_probs=56.8
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc--C-CCCcccccCCCCCCEEEEEE
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL--E-DQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~L--e-D~~tL~dy~I~~~svI~L~v 182 (459)
+..+|.||..+|..+.-....++||.+|.+-|... +.. .....|+ |=.+.| + ...+|.|.++.+.++|.+..
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 44677888888888888888999999999999887 544 5667776 457888 3 38999999999888888743
No 234
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.87 E-value=1.1 Score=38.16 Aligned_cols=76 Identities=22% Similarity=0.427 Sum_probs=51.9
Q ss_pred CCCEEEEE-Ee---CCeEEEEEeCCCCCHHHHHHHHHHH--hCCCCc------ceEEEE-cC---e-ecccCC-------
Q 012653 31 NDSILIFL-SV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-EG---R-ELARSN------- 86 (459)
Q Consensus 31 ~~sM~I~V-tl---~G~~~~l~V~~~dTV~~LK~kIq~~--~Gip~~------~QrLvf-~G---k-~L~~D~------- 86 (459)
..+|.++| .. ....+++.|...|||.++|+||-.. .|.|.. ...|-+ .| + .|.+.+
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 45666776 22 2345889999999999999999876 466544 445665 23 2 244211
Q ss_pred -----ccccccCcccccceeeeeec
Q 012653 87 -----SRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 87 -----~tL~dygI~~gstl~LvlrL 106 (459)
.||+.|+|.+|+++-|+.+.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 25889999999999887654
No 235
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=88.66 E-value=1.3 Score=38.33 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=47.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--hCCCC------cceEEEE-c---Cee-cccCC------------ccccccCccc
Q 012653 42 GSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GRE-LARSN------------SRVRDYGLAD 96 (459)
Q Consensus 42 G~~~~l~V~~~dTV~~LK~kIq~~--~Gip~------~~QrLvf-~---Gk~-L~~D~------------~tL~dygI~~ 96 (459)
+..+++.|...|||.++|+||-.. .++|. +...|-+ . |+. |.+.+ .||+.|+|.+
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence 456889999999999999999887 35554 4556666 2 332 54211 3688999999
Q ss_pred ccceeeeeecc
Q 012653 97 GNVLHLVLRLS 107 (459)
Q Consensus 97 gstl~LvlrLs 107 (459)
|+++-|+.+..
T Consensus 96 gatv~l~~~~~ 106 (127)
T 3h6n_A 96 GASLAMSLIDK 106 (127)
T ss_dssp TCEEEEEECC-
T ss_pred CCEEEEEEccc
Confidence 99998886643
No 236
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.24 E-value=1.2 Score=38.09 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=48.0
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCC
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRN 174 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~--gip~----~~~~Q~Li~----~Gk-~LeD~-------------~tL~dy~I~~ 174 (459)
...+.+.|-..+||..+|+||-... |.|. .+++..|-+ .|+ .|.|. +||..|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457788889999999999997764 4442 246777776 223 24431 6889999999
Q ss_pred CCEEEEEEee
Q 012653 175 EAVIHLLVRK 184 (459)
Q Consensus 175 ~svI~L~vrk 184 (459)
|+++-|+-+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999997664
No 237
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.00 E-value=1.5 Score=35.44 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCCEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE---cCeecccCCccccccCccc
Q 012653 30 SNDSILIFLSV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLAD 96 (459)
Q Consensus 30 ~~~sM~I~Vtl-~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~ 96 (459)
...+.++-|.+ ..+...++|+|..++.+|--.|.++..+.+..-.|.- .+.+|+ -+.+|.||||++
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence 47899999944 4567888999999999999999999999999887773 366786 889999999987
No 238
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=87.71 E-value=0.25 Score=53.48 Aligned_cols=39 Identities=38% Similarity=0.602 Sum_probs=33.3
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+|.=|++.=.|||.+|||+..+ |+ ++.||=|+||
T Consensus 463 S~A~ySvv~YILGigDRH~~NILld~t--G~--v~HIDFG~~f 501 (614)
T 3ls8_A 463 SCAGYCVITYILGVGDRHLDNLLLTKT--GK--LFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHTCCCCCTTSEEECTT--SC--EEECCCSSCT
T ss_pred HHHHHhHhheeeeccCCCCcceeEcCC--CC--EeeeehHHhh
Confidence 455677888889999999999999753 66 9999999998
No 239
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=87.56 E-value=1.6 Score=43.73 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=53.0
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhcCC--CCCCCcEEEEE------CCEEcCCCCcccccCCCCCCEEEEE
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELIC------DGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~gi--p~~~~~Q~Li~------~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
+-+-++..+++.||.++-.+|.++... ..+.++.-|+. .|..|++.++|+.|++++++.|+..
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 445668888999999999999988752 23478889998 6788999999999999999998875
No 240
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=87.27 E-value=3 Score=44.24 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=75.0
Q ss_pred CCCEEEEEEeC---CeEEEEEeCCCCCHHHHHHHHHHHhCCC---CcceEEE--EcCee---cccCCccccccCcccccc
Q 012653 31 NDSILIFLSVG---GSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLV--FEGRE---LARSNSRVRDYGLADGNV 99 (459)
Q Consensus 31 ~~sM~I~Vtl~---G~~~~l~V~~~dTV~~LK~kIq~~~Gip---~~~QrLv--f~Gk~---L~~D~~tL~dygI~~gst 99 (459)
...|+|+.... -..+.+.|..+.||.+|-..++++.+++ ..+.||+ ++++. +. ++.+|....=....+
T Consensus 337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~ 415 (530)
T 2ylm_A 337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRT 415 (530)
T ss_dssp BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCE
T ss_pred CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccce
Confidence 56777766322 2367788888999999999999999987 4556665 66653 44 555665432111222
Q ss_pred eeeeeecc--------cccceeeee-------ecceeeeeeccCCChHHHHHHHHHHhcCCC
Q 012653 100 LHLVLRLS--------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (459)
Q Consensus 100 l~LvlrLs--------d~m~I~Vkt-------~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip 146 (459)
+.+-.-.. +.+.|.|-- .-|..|.+.|.+.+|..++|++|+++.|++
T Consensus 416 ~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~ 477 (530)
T 2ylm_A 416 FRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQ 477 (530)
T ss_dssp EEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCC
T ss_pred EEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCC
Confidence 22211111 112233311 358889999999999999999999999976
No 241
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=86.23 E-value=2.1 Score=34.41 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=53.6
Q ss_pred eeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 122 ~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
+.-.++-.+++..||+.++.+.++. .+...+...+..|+.+++|.|-|++-...+.+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~--L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCS--LDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSC--CSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCC--cccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 3445677889999999999999988 89999999999999999999999999999998765
No 242
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.36 E-value=2.3 Score=34.11 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=43.2
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCe
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (459)
|...|.|.|... -++.|+|.+..+..+|..+|.++.+++++.-.|.|...
T Consensus 2 ~~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 2 SHMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp CSSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 455688888655 69999999999999999999999999988889988643
No 243
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=84.48 E-value=0.46 Score=52.15 Aligned_cols=39 Identities=36% Similarity=0.581 Sum_probs=33.6
Q ss_pred hhhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.+.-.+|.=|++.=.|||.+|||+.. .|+ ++.||=|+||
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~--tG~--v~HIDFG~~f 575 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT--NGK--LFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT--TSC--EEECCCCSCT
T ss_pred HHHHHHHHHHHccCCCCCCcceEEeC--CCC--EEEEeehhhh
Confidence 45567788888999999999999985 376 9999999998
No 244
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=84.33 E-value=2.3 Score=36.49 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=53.4
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcC-CCCCCCcEEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH 179 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~g-ip~~~~~Q~Li--~~Gk~LeD-~~tL~dy~I~~~svI~ 179 (459)
..+|-||..+|..+.-....++||.+|.+-|..... .. .....|+ |-.+.|+| +.+|.|.++.+.++|.
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 367788888888888888899999999999988642 22 4556666 56788865 7999999998865544
No 245
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=83.67 E-value=8.7 Score=29.10 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=47.7
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 32 ~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
..|+|+|.-......+++....|+.+|..++ +++...-.+..+|..+.++ . -+++|+.+.++....+
T Consensus 3 ~~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~~V~G 69 (70)
T 1ryj_A 3 IGMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIRVIYG 69 (70)
T ss_dssp CCEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEECTTC
T ss_pred eeEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEecccc
Confidence 3588888555555677888889999999875 4566666677899998743 3 5667888877655443
No 246
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=83.57 E-value=4.1 Score=38.41 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=51.5
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCCCCCC-cEEEEE-C----CEEcCC-CCcccccCCCCCCEEEEEEee
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC-D----GEELED-QRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gip~~~~-~Q~Li~-~----Gk~LeD-~~tL~dy~I~~~svI~L~vrk 184 (459)
.+++.+++.+||.+|++++.+.++++ .+ +.||-. . -..|+| +.+|.++++.++..|.+=+|.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 45677899999999999999999998 65 688875 2 356776 589999999999999987764
No 247
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=82.97 E-value=1.8 Score=37.24 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=54.5
Q ss_pred CCCEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHHh-CCCCcceEEE--EcCeecccCCccccccCcccccce
Q 012653 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (459)
Q Consensus 31 ~~sM~I~Vt-l~G~~~~l~V~~~dTV~~LK~kIq~~~-Gip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstl 100 (459)
....+|-|. -+|..+.-....++||.+|..-|.... +.......|+ |-.+.|.+++.+|++.|+.+..++
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 445777774 478899999999999999999999863 3444556676 568889866799999999875543
No 248
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=82.56 E-value=2.5 Score=33.91 Aligned_cols=62 Identities=10% Similarity=0.229 Sum_probs=53.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeec
Q 012653 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (459)
Q Consensus 44 ~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (459)
.+.-.++=.+++..||..++.+.|++.+.-.+...+..|+ ++.+|.|.+++-...+.+.+.+
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~-~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLD-PDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECC-TTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccC-CCccHHHhhcccccEEEEEEEE
Confidence 3445667788999999999999999999999999999987 9999999999988888766543
No 249
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=81.85 E-value=0.68 Score=53.16 Aligned_cols=38 Identities=42% Similarity=0.546 Sum_probs=29.5
Q ss_pred hhheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
+.-.+|.=|++.=.|||.+|||+.++ |+ ++.||-|+||
T Consensus 924 ~A~ysvv~YiLgigDRH~~NILid~t--G~--v~HIDFG~~f 961 (1091)
T 3hhm_A 924 CAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFL 961 (1091)
T ss_dssp HHHHHHHHHHHTCCCCCTTTEEEETT--SC--EEECCCCCCS
T ss_pred hhhhhheEEEEeecCCCCcceEEeCC--CC--EEEEeehhhh
Confidence 44556777778888999999998763 65 8888988887
No 250
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=81.22 E-value=2.6 Score=35.05 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=53.2
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC--CCCcccccCCCCCCEEEEEE
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--DQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~~Gk~Le--D~~tL~dy~I~~~svI~L~v 182 (459)
..+|.||..+|+.+.-....++||..|.+-|..... . +...+|+ |=.+.|. ...+|.+.++.+.++|.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~-~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY-H--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC-C--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCC-C--CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 355667777777777677789999999999986633 2 4566666 4467775 47999999999999987743
No 251
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=80.80 E-value=4.3 Score=37.88 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCCCCCC-cEEEEE---C--CEEcCC-CCcccccCCCCCCEEEEEEee
Q 012653 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC---D--GEELED-QRLITDICKRNEAVIHLLVRK 184 (459)
Q Consensus 121 ~~~ieV~~~~TV~~LK~kI~~~~gip~~~~-~Q~Li~---~--Gk~LeD-~~tL~dy~I~~~svI~L~vrk 184 (459)
.+++.+++.+||.++++++.+.++++ .+ +.||-. . ...|+| ++||.++++.++..|.+=+|.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 46678899999999999999999998 65 678763 2 245666 579999999999999987763
No 252
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=80.53 E-value=0.68 Score=52.57 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=46.4
Q ss_pred CCEEEEEEe--CCeEEEEEeCCCCCHHHHHHHHHHH----hCCC----CcceEEEEcCee--cccCCccccccC-----c
Q 012653 32 DSILIFLSV--GGSVIPMRVMESDSIASVKLRIQSY----NGFF----VKKQKLVFEGRE--LARSNSRVRDYG-----L 94 (459)
Q Consensus 32 ~sM~I~Vtl--~G~~~~l~V~~~dTV~~LK~kIq~~----~Gip----~~~QrLvf~Gk~--L~~D~~tL~dyg-----I 94 (459)
..+.|.|.. .+.+.++.|..++|..++...+-++ .+.+ +..-.|...|+. |. .+..|.+|. +
T Consensus 84 ~~~~i~v~~~~~~~~~t~~v~~~~~p~~~i~~~~~k~~~~~~~~~~~~~~dyvLkv~G~~EYl~-g~~pL~~f~yIR~cl 162 (940)
T 2wxf_A 84 RALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATVFRQPLVEQPEEYALQVNGRHEYLY-GNYPLCHFQYICSCL 162 (940)
T ss_dssp CEEEEEEEESSCSCEEEEEEETTCCHHHHHHHHHHHHHHHTTC----CGGGEEEEETTSSCEEC-SSCCGGGBHHHHHHH
T ss_pred CcEEEEEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccCCccceEEEecCcEEEEE-CCcceehhhHHHHHH
Confidence 445666632 4578999999999999988776543 2333 556677788864 44 446666664 2
Q ss_pred ccccceeeeee
Q 012653 95 ADGNVLHLVLR 105 (459)
Q Consensus 95 ~~gstl~Lvlr 105 (459)
..+.+++|++.
T Consensus 163 ~~~~~~~l~l~ 173 (940)
T 2wxf_A 163 HSGLTPHLTMV 173 (940)
T ss_dssp HHCCCCEEEEE
T ss_pred hcCCCCeEEEE
Confidence 34555565554
No 253
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=80.33 E-value=11 Score=39.99 Aligned_cols=124 Identities=11% Similarity=0.134 Sum_probs=92.3
Q ss_pred CCCCEEEEEEe---CCeEE----EEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc------CeecccCCcccccc--Cc
Q 012653 30 SNDSILIFLSV---GGSVI----PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE------GRELARSNSRVRDY--GL 94 (459)
Q Consensus 30 ~~~sM~I~Vtl---~G~~~----~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~------Gk~L~~D~~tL~dy--gI 94 (459)
..+.+.||++. ..+++ .+.|..+++|.+|-..|.+..|+|++....+|. ...|.+.+.++.+. .|
T Consensus 127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL 206 (530)
T 2ylm_A 127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDEL 206 (530)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTC
T ss_pred CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcc
Confidence 46779999942 23333 357889999999999999999999998877776 23354357799999 99
Q ss_pred ccccceeeeeecc------------------cccceeeee---ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEE
Q 012653 95 ADGNVLHLVLRLS------------------DLQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQE 153 (459)
Q Consensus 95 ~~gstl~LvlrLs------------------d~m~I~Vkt---~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~ 153 (459)
.+|+.|-.-.... ..+.|.++- .+...|.+++....|-.+|-++|++..++. |...+
T Consensus 207 ~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~d--P~~lR 284 (530)
T 2ylm_A 207 MDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTD--PMLLQ 284 (530)
T ss_dssp CTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSC--GGGEE
T ss_pred cCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCC--chhEE
Confidence 9999875443322 123333332 235679999999999999999999999986 88877
Q ss_pred EE
Q 012653 154 LI 155 (459)
Q Consensus 154 Li 155 (459)
++
T Consensus 285 f~ 286 (530)
T 2ylm_A 285 FF 286 (530)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 254
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=79.49 E-value=0.76 Score=52.29 Aligned_cols=74 Identities=19% Similarity=0.356 Sum_probs=46.5
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHh-------CCC----CcceEEEEcCee--cccCCccccccC----
Q 012653 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYN-------GFF----VKKQKLVFEGRE--LARSNSRVRDYG---- 93 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~-------Gip----~~~QrLvf~Gk~--L~~D~~tL~dyg---- 93 (459)
.+.+.|.|..++..+++.|..++|..++...+-++. +++ +.+-.|...|+. |. .+..|.+|.
T Consensus 76 ~~~~~v~i~~~~~~~t~~v~~~~t~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~vLkv~G~~eyl~-~~~~l~~f~yIr~ 154 (961)
T 1e7u_A 76 NNCVFIVIHRSTTSQTIKVSADDTPGTILQSFFTKMAKKKSLMDIPESQNERDFVLRVCGRDEYLV-GETPIKNFQWVRQ 154 (961)
T ss_dssp SSEEEEEEESSSCEEEEEEETTCCHHHHHHHHHHHSCC-----------CCSCCEEEETTSSCBCC-SSSCGGGBHHHHH
T ss_pred cCceEEEEecCCceEEEEECCCCCHHHHHHHHHHHhhhccccccCCCCCCccceEEEecCceeeee-CCcceehhhHHHH
Confidence 445666665466779999999999999998766554 443 234567777763 44 445666664
Q ss_pred -cccccceeeeee
Q 012653 94 -LADGNVLHLVLR 105 (459)
Q Consensus 94 -I~~gstl~Lvlr 105 (459)
+..+..++|++.
T Consensus 155 cl~~~~~~~l~l~ 167 (961)
T 1e7u_A 155 CLKNGEEIHLVLD 167 (961)
T ss_dssp HHHHTCCEEEEEE
T ss_pred HHhcCCCCeEEEE
Confidence 344555666554
No 255
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=79.48 E-value=0.87 Score=52.44 Aligned_cols=37 Identities=43% Similarity=0.543 Sum_probs=28.2
Q ss_pred hheeeecEEeecCCCCCCcEEEecCCCCceEEEeeecCCcC
Q 012653 416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (459)
Q Consensus 416 ~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~IDhg~~~ 456 (459)
.-.+|.=|++.=.|||.+|||+.++ |+ ++.||=|.||
T Consensus 928 A~ySvv~YILGlGDRH~~NILid~t--G~--v~HIDFG~~f 964 (1092)
T 2y3a_A 928 AGYCVASYVLGIGDRHSDNIMVKKT--GQ--LFHIDFGHIL 964 (1092)
T ss_dssp HHHHHHHHHTTCCCCCTTTEEECTT--SC--EEECCCSCCS
T ss_pred HHHHHHHHHhcCCCCCCccEEEecC--CC--EEEEeehhhh
Confidence 3445556666668999999999753 65 8999999987
No 256
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=79.23 E-value=4.4 Score=31.40 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=47.1
Q ss_pred EEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 34 ILIFLSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 34 M~I~Vtl~G-~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+|+|++.| ....+++.+..||++|-. +.|++++.-....+|+.+.+|. +.+|+.+.++--.+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEEEeeccc
Confidence 788886655 455689999999998876 5789888777778999998544 2347777765544444
No 257
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=78.99 E-value=7.2 Score=42.03 Aligned_cols=80 Identities=18% Similarity=0.349 Sum_probs=52.9
Q ss_pred CCCCEEEEEEe-C------CeEEEEEeCCCCCHHHHHHHHHHH--hCCCCc------ceEEEEc----Ce-ecccCC---
Q 012653 30 SNDSILIFLSV-G------GSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVFE----GR-ELARSN--- 86 (459)
Q Consensus 30 ~~~sM~I~Vtl-~------G~~~~l~V~~~dTV~~LK~kIq~~--~Gip~~------~QrLvf~----Gk-~L~~D~--- 86 (459)
.-..|.++|.. . ...+++.|...|||.++|+||-.. .|+|.. ...|-+. |+ .|.+.+
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccc
Confidence 35667777722 1 246899999999999999999865 466543 3345541 33 244211
Q ss_pred ---------ccccccCcccccceeeeeecccc
Q 012653 87 ---------SRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 87 ---------~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.||+.|+|.+|+++-|+.+....
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga~v~L~p~~~~~ 365 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGATVALVPCLTKH 365 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTCEEEEEEC----
T ss_pred eecCcceeecchhhcCCCCCcEEEEEeccccc
Confidence 37999999999999988776543
No 258
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=78.34 E-value=6 Score=34.07 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=43.0
Q ss_pred eeeeeeccCCChHHHHHHHHHHhc----CCCCC--CCcEEEEE----CCEEcCC----------C----CcccccCCCCC
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKG----REFVD--LKNQELIC----DGEELED----------Q----RLITDICKRNE 175 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~----gip~~--~~~Q~Li~----~Gk~LeD----------~----~tL~dy~I~~~ 175 (459)
..+.+.|-..+||.++|+||-... +.|.. +++..|-+ .+..|.| . .||..|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 457788889999999999996553 55431 45566665 1222322 1 56788999999
Q ss_pred CEEEEE
Q 012653 176 AVIHLL 181 (459)
Q Consensus 176 svI~L~ 181 (459)
+++-|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 259
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=77.84 E-value=9.7 Score=40.95 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=53.0
Q ss_pred CCCCEEEEEE-eC---CeEEEEEeCCCCCHHHHHHHHHHH--hCCCC------cceEEEE-c---Ce-ecccCC------
Q 012653 30 SNDSILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GR-ELARSN------ 86 (459)
Q Consensus 30 ~~~sM~I~Vt-l~---G~~~~l~V~~~dTV~~LK~kIq~~--~Gip~------~~QrLvf-~---Gk-~L~~D~------ 86 (459)
.-..|.++|. .. ...+++.|...|||.++|+||-.. .|+|. +..-|-+ . |+ .|.+.+
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCcccccc
Confidence 3566777773 22 367999999999999999999877 35554 3445554 1 22 233211
Q ss_pred ------ccccccCcccccceeeeeecccc
Q 012653 87 ------SRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 87 ------~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.||+.|+|.+|+++-|+.+....
T Consensus 310 ~~wkrLNTL~HY~V~Dga~v~L~p~~~~~ 338 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGSLVALVPKQVSA 338 (627)
T ss_dssp TTEEECCBTTTTTCCTTCEEEEEEC----
T ss_pred CceeEecchhhcCCCCCceEEEEeccccc
Confidence 36899999999999998876543
No 260
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=76.66 E-value=4.6 Score=34.81 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=47.8
Q ss_pred CCCEEEEEEe----C------CeEEEEEeCCCCCHHHHHHHHHHH----hCCCCc----ceEEEE-c---Ceeccc----
Q 012653 31 NDSILIFLSV----G------GSVIPMRVMESDSIASVKLRIQSY----NGFFVK----KQKLVF-E---GRELAR---- 84 (459)
Q Consensus 31 ~~sM~I~Vtl----~------G~~~~l~V~~~dTV~~LK~kIq~~----~Gip~~----~QrLvf-~---Gk~L~~---- 84 (459)
-.++.+.|.. . ...+++.|...|||.++|+||-.. .|+|.. ...|-+ . +..|.+
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 5566777743 2 257899999999999999998765 376643 334444 1 222321
Q ss_pred -----CC----ccccccCcccccceeee
Q 012653 85 -----SN----SRVRDYGLADGNVLHLV 103 (459)
Q Consensus 85 -----D~----~tL~dygI~~gstl~Lv 103 (459)
++ .||+.|+|.+|+++-|+
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEe
Confidence 11 25777889999888765
No 261
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=75.64 E-value=14 Score=29.89 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=43.0
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcc-eEEEEcCe
Q 012653 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEGR 80 (459)
Q Consensus 30 ~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~-QrLvf~Gk 80 (459)
+...|+|.+...|..+.+.+.++.+..+|..++++..++...+ ..|.|-..
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 3567999999999999999999999999999999999987655 46667543
No 262
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.91 E-value=8.7 Score=30.94 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=49.6
Q ss_pred eeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE---CCEEcCCCCcccccCCCC
Q 012653 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRN 174 (459)
Q Consensus 112 I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~---~Gk~LeD~~tL~dy~I~~ 174 (459)
+.|+-...+.+.+.|++.-+.+++--.|.++.... ++...|.- .+++|+-.++|+||+++.
T Consensus 13 LvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefd--p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 13 VVINFKKTQKTIVRVSPHASLQELAPIICSKCEFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCC--TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCC--hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 44444445677889999999999999999999865 78777774 567899999999999985
No 263
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=71.37 E-value=19 Score=28.92 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=46.4
Q ss_pred CCCEEEEEEe-------CC-eEEEEEeCCCCCHHHHHHHHHHHhC-C----------CCcceEEEEcCeecccCCccccc
Q 012653 31 NDSILIFLSV-------GG-SVIPMRVMESDSIASVKLRIQSYNG-F----------FVKKQKLVFEGRELARSNSRVRD 91 (459)
Q Consensus 31 ~~sM~I~Vtl-------~G-~~~~l~V~~~dTV~~LK~kIq~~~G-i----------p~~~QrLvf~Gk~L~~D~~tL~d 91 (459)
..+|+|.|.+ .| ....+++....||.+|...+..... + ....-.+..+|+... . +
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~-----~ 80 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----D 80 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----T
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----C
Confidence 5789999942 23 4678888788999999999987631 1 012234556777664 2 5
Q ss_pred cCcccccceeeeeeccc
Q 012653 92 YGLADGNVLHLVLRLSD 108 (459)
Q Consensus 92 ygI~~gstl~LvlrLsd 108 (459)
+-+++|+.|.+....++
T Consensus 81 ~~L~dGDeV~i~ppv~G 97 (98)
T 1vjk_A 81 EELKDGDVVGVFPPVSG 97 (98)
T ss_dssp CBCCTTCEEEEESCC--
T ss_pred CCCCCCCEEEEECCCCC
Confidence 56778888877665544
No 264
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=68.29 E-value=7.3 Score=31.14 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=37.0
Q ss_pred eeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCE
Q 012653 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (459)
Q Consensus 113 ~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk 159 (459)
.|+....-++.|.|.+..+..+|.++|+++.+++ ++...|.|..+
T Consensus 7 ~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 7 TLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELR--LEHTKLSYRPR 51 (83)
T ss_dssp EEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCC--GGGCCEEECCT
T ss_pred EEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCC--cceeEEEeeCC
Confidence 3333333688899999999999999999999988 88889999664
No 265
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=68.07 E-value=16 Score=35.27 Aligned_cols=74 Identities=11% Similarity=-0.031 Sum_probs=55.6
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE--CCE--EcCCCCcccccCCCCCCEEEEEEe
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGE--ELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~--~Gk--~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
..+.+.|...+| ++.+.++.+.|+.+|=+.|+...|+.. .+.--|.| +|. .|+..+.|.+..++.+....+..|
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e-~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC-CccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 346677888888 788999999999999999999999872 56667776 443 377788888876555555555544
No 266
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=66.68 E-value=14 Score=35.26 Aligned_cols=72 Identities=19% Similarity=0.135 Sum_probs=52.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE---CC--EEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DG--EELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~---~G--k~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
+.+.|...+| ++.+.++.+.|+.++=+.|+...|+. ..+.--|.+ +| ..|+..+.+.+..++.+....|..|
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLR-EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCC-CcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4566777887 67899999999999999999999987 355667776 33 3467777777765545555555444
No 267
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=65.11 E-value=5.8 Score=34.23 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE
Q 012653 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77 (459)
Q Consensus 45 ~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf 77 (459)
.++.|..+.|+.+||..|++..|+|++.|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457899999999999999999999999999875
No 268
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=65.02 E-value=40 Score=25.29 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=41.6
Q ss_pred ccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 109 ~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.|.|+|+-.. ....+++....||.+|.+.+ +.+ +....+..+|+.+..+. -+++++.|.++
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~--~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIP--IETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCC--TTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCC--CCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 4777765322 22345667778999998876 444 56667889999987544 56778888875
No 269
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=63.88 E-value=14 Score=29.58 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=43.6
Q ss_pred CCCEEEEEEeCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 31 NDSILIFLSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~-dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
...|+| +++|+.+. +... .||.+|...+ +++...-.+..+|..+.+ ....++-+++|+.|.++....+
T Consensus 18 ~~~M~I--~vNGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 18 GGRHML--QLNGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp ----CE--EETTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEEECCC
T ss_pred CcceEE--EECCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEccccc
Confidence 556654 55666554 4565 7999998875 566665567789998873 3444567888999887765443
No 270
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=61.70 E-value=24 Score=26.00 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=43.2
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
|+++|+.+.+ ...||.+|...+ +++...-.+..+|+.+.+ ..-.++-+++|+.|.++....+
T Consensus 2 i~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 2 VWLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp EEETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEECCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEeeccc
Confidence 3567777654 568999998876 455666667788888873 2344566888998887765544
No 271
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=58.85 E-value=39 Score=27.04 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=37.7
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEE
Q 012653 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77 (459)
Q Consensus 32 ~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf 77 (459)
..|+|.+..++..+.|.|.++-+..+|+.||..+..+. .+.|++
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ 54 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQT 54 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEE
Confidence 67999998888999999999999999999999998884 444443
No 272
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=58.49 E-value=1.3 Score=45.56 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=30.8
Q ss_pred hhhhheeeecEEeecCCCCCCcEEEecCCCCceEEEee
Q 012653 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (459)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gNiLv~~~~~~~~~l~~I 450 (459)
.++-+..||.+++.|+|.|+.|+=+-.+++|.++|.|.
T Consensus 293 ~~~~rr~vfn~ligN~D~H~KN~s~l~~~~g~~~LaPa 330 (440)
T 3tpd_A 293 YDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPF 330 (440)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGCEEEECGGGCEEECCC
T ss_pred HHHHHHHHhhHhhcCCcCCccceEEEEcCCCceEECch
Confidence 35667889999999999999999876654577788775
No 273
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=57.92 E-value=20 Score=35.44 Aligned_cols=52 Identities=10% Similarity=0.204 Sum_probs=41.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCee-cccCCcccccc
Q 012653 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDY 92 (459)
Q Consensus 41 ~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-L~~D~~tL~dy 92 (459)
.-....+.+.+.+|+.+++.+++++++++++.|.|.+.+.. ..+.......|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~ 372 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 372 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccC
Confidence 45778899999999999999999999999999999998843 33233444444
No 274
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=54.63 E-value=46 Score=26.50 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=43.8
Q ss_pred cccceeeeee------cc-eeeeeeccCCChHHHHHHHHHHhcC-CC-------CC-CCcEEEEECCEEcCCCCcccccC
Q 012653 108 DLQAITVTTV------CG-KVFEFHVERGRNVGYVKQQIAKKGR-EF-------VD-LKNQELICDGEELEDQRLITDIC 171 (459)
Q Consensus 108 d~m~I~Vkt~------~G-k~~~ieV~~~~TV~~LK~kI~~~~g-ip-------~~-~~~Q~Li~~Gk~LeD~~tL~dy~ 171 (459)
+.|.|.|+-. .| ....+++....||.+|.+.+..... .. .. .....+..||+.... ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 4455665542 23 3556777778899999999988742 00 00 134557778887753 556
Q ss_pred CCCCCEEEEE
Q 012653 172 KRNEAVIHLL 181 (459)
Q Consensus 172 I~~~svI~L~ 181 (459)
+++++.|.++
T Consensus 83 L~dGDeV~i~ 92 (98)
T 1vjk_A 83 LKDGDVVGVF 92 (98)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 7888888774
No 275
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=53.85 E-value=61 Score=26.69 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=56.8
Q ss_pred cceeeeeec---ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEEC---CEEcCCCCcccccCCCCCCEEEEEE
Q 012653 110 QAITVTTVC---GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---GEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 110 m~I~Vkt~~---Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~---Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
++|+|...+ ....++.|....-|+.|-.+|-++.+++.+=.+.-|-.- -..|.-..||+.|+|+-++.++++-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 446665543 366889999999999999999988887755667777762 3456889999999999999998753
No 276
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=53.73 E-value=33 Score=36.99 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=46.8
Q ss_pred eeeeeeccCCChHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~--gip~----~~~~Q~Li~----~Gk-~LeD~-------------~tL~dy~I~~~ 175 (459)
..+.+.|-..+||..+|+||-... |.|. .+++..|-+ .|+ .|.|. .||.+|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457788889999999999997653 4332 246677776 233 35442 68999999999
Q ss_pred CEEEEEEee
Q 012653 176 AVIHLLVRK 184 (459)
Q Consensus 176 svI~L~vrk 184 (459)
+++.|+-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999986553
No 277
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=53.45 E-value=32 Score=37.03 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=47.5
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCC
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRN 174 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~--gip~----~~~~Q~Li~----~Gk-~LeD~-------------~tL~dy~I~~ 174 (459)
...+.+.|-..+||..+|+||-... |.|. .+++..|-+ .|+ .|.|. .||.+|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3567788889999999999997763 3331 356777776 233 34431 6899999999
Q ss_pred CCEEEEEEeeC
Q 012653 175 EAVIHLLVRKS 185 (459)
Q Consensus 175 ~svI~L~vrks 185 (459)
|+++-|+-+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999976543
No 278
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.77 E-value=29 Score=37.02 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=53.5
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC-----EEcCCCCcccccCCCCCCEEEEEEe
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-----EELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G-----k~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
+.+.|...+| ++.+.|+.+.|+.+|=..|+...|+. ..+..-|.|-. ..|+..+.+.+.+++.+..+.|.+|
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC-CccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 5566777887 67899999999999999999999986 35667777732 4577777777766555555555554
No 279
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=52.08 E-value=20 Score=27.66 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=40.2
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
|+|.|+......-.+++....||++|- ++.+++ ++...+..||+.+..+.. .+|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~--~~~VvV~vNG~~v~~d~~------l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLS--PHEVTVLVDGRPVPEDQS------VEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCC--SSCCCEECCCCCCCTTSS------SCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCC--cceEEEEECCEECCHHHC------CCCCEEEEE
Confidence 567777553344457888999998864 456777 677777789988865442 236666653
No 280
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=51.75 E-value=31 Score=26.06 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=37.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCC--cceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 46 PMRVMESDSIASVKLRIQSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 46 ~l~V~~~dTV~~LK~kIq~~~Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
++++ ...||.+|...+....++.. ..-.+..+|+.+. + .++-+++|+.|.+....+|+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEECCCCCC
Confidence 4556 66799999999987544321 2334556777654 2 24567789998887766553
No 281
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=48.65 E-value=29 Score=25.72 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=40.6
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vrks~ 186 (459)
|.|.|...+|+. +++....|+.++-+.+..... ....-...+|+..+-. +-+++++.|.++-..++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH----HTEEEEEETTEECCTT-----CBCCSSSBEEEEECCCC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc----cceEEEEECCEEeCCC-----cCcCCCCEEEEEECCCC
Confidence 567777667776 455578899998877743321 1122235688877643 44556778887654433
No 282
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=48.25 E-value=36 Score=32.77 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=49.2
Q ss_pred cccceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEEC---C--EEcCCCCcccccC
Q 012653 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---G--EELEDQRLITDIC 171 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~---G--k~LeD~~tL~dy~ 171 (459)
..+.+.|..++|....+.|++..|+.+|=+.|+...|+. ..+.--|.|. | ..|+..+.+.+..
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CcceeEEEEEcCCCccchhccchhHHHhc
Confidence 346778888999999999999999999999999999987 3566677763 2 3466677776654
No 283
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=47.88 E-value=12 Score=32.11 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=29.3
Q ss_pred eeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE
Q 012653 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC 156 (459)
Q Consensus 122 ~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~ 156 (459)
..+.|..+.|+.++|..|++..|++ +++|+|-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~--~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFP--QDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCC--cccEEEEE
Confidence 3578889999999999999999998 89999764
No 284
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=45.86 E-value=26 Score=26.81 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=45.3
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+++|+.+.+ ...||.+|-.. .++++..--+..+|..+.+ ....++-+++|+.|.++....++
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr--~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR--GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH--HHHTTCBCCTTCEEEEECCCCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEccccCC
Confidence 4557776554 56899998764 5777777778899999974 35556678889998877655443
No 285
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=44.42 E-value=1e+02 Score=25.64 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=46.3
Q ss_pred CCCEEEEEEe-------CC--eEEEEEeCC---CCCHHHHHHHHHHHhCCCCcceEEEEc-Ce------ecccCCcc---
Q 012653 31 NDSILIFLSV-------GG--SVIPMRVME---SDSIASVKLRIQSYNGFFVKKQKLVFE-GR------ELARSNSR--- 88 (459)
Q Consensus 31 ~~sM~I~Vtl-------~G--~~~~l~V~~---~dTV~~LK~kIq~~~Gip~~~QrLvf~-Gk------~L~~D~~t--- 88 (459)
...|+|.|.+ .| +.+.+++.. ..||.+|...+.+.. +..+.+|+.. |+ .|- |+..
T Consensus 9 ~~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlV-N~~di~~ 85 (114)
T 1wgk_A 9 AAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLI-NDADWEL 85 (114)
T ss_dssp CCCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEE-SSSBHHH
T ss_pred CCCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEE-CCeeeec
Confidence 4669999942 23 367788874 359999999998775 1112222111 11 122 2221
Q ss_pred --ccccCcccccceeeeeecccc
Q 012653 89 --VRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 89 --L~dygI~~gstl~LvlrLsd~ 109 (459)
=.+|-+++++.|.++..++++
T Consensus 86 l~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 86 LGELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp HCTTTCBCCSSEEEEEEECSCCC
T ss_pred cCCcCcCCCCCCEEEEeCCCCCC
Confidence 135778899999888888776
No 286
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=44.10 E-value=37 Score=27.84 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=32.6
Q ss_pred CCEEEEEEeC--------CeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 012653 32 DSILIFLSVG--------GSVIPMRVMESDSIASVKLRIQSYNGFF 69 (459)
Q Consensus 32 ~sM~I~Vtl~--------G~~~~l~V~~~dTV~~LK~kIq~~~Gip 69 (459)
.+|+|.|... +.++.|.|.++.+..+|..||.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4588888555 6689999999999999999999998865
No 287
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=43.59 E-value=95 Score=25.55 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=50.8
Q ss_pred CEEEEEE-eC---CeEEEEEeCCCCCHHHHHHHHHHHhCCCCc--ceEEEEcCe--ecccCCccccccCcccccceeeee
Q 012653 33 SILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSYNGFFVK--KQKLVFEGR--ELARSNSRVRDYGLADGNVLHLVL 104 (459)
Q Consensus 33 sM~I~Vt-l~---G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~--~QrLvf~Gk--~L~~D~~tL~dygI~~gstl~Lvl 104 (459)
.+.|+|+ ++ ....+++|..+.-|..|..||-++..++.+ .--|-..-+ =|.+-..+|..|||+.++.++...
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 3455553 22 256999999999999999999988765433 234444322 233478899999999999888654
No 288
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=42.23 E-value=37 Score=26.32 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=44.6
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-CcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
|+++|+.+.+......||.+|-..+ +++ +..--+..+|..+.+ ....++-+++|+.|.++....++
T Consensus 3 I~vNGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 3 LTVNGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEETTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECCCCCCS
T ss_pred EEECCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEeeecCC
Confidence 4557775544211567999988754 566 555567899999974 45556678889998877655443
No 289
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=40.23 E-value=75 Score=24.79 Aligned_cols=61 Identities=8% Similarity=0.112 Sum_probs=38.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCC------C-------CcceEEEEcCeecccCCccccccCcccccceeeeeecccc
Q 012653 46 PMRVMESDSIASVKLRIQSYNGF------F-------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (459)
Q Consensus 46 ~l~V~~~dTV~~LK~kIq~~~Gi------p-------~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (459)
.+++ ...||.+|...+..+..- . ...-.+..+|+... ... =.++-+++|+.|.+....+++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~-~~~-~~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVR-FSG-GLATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGG-GTT-GGGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEcc-CcC-CCCcCCCCCCEEEEECCCCCC
Confidence 4564 457999999999877521 0 01234556777664 211 124668889999888776653
No 290
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=38.17 E-value=87 Score=24.11 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=41.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhC-CC----C------cceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 43 SVIPMRVMESDSIASVKLRIQSYNG-FF----V------KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 43 ~~~~l~V~~~dTV~~LK~kIq~~~G-ip----~------~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
....+++....||.+|...+..... +. . ..-.+..+|+... . ++-+++|+.|.+....++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~Ppv~G 88 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALFPPVSG 88 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEECCCSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEECCCCC
Confidence 6778888888899999999988752 10 0 1135556777775 3 455778998888776654
No 291
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.62 E-value=68 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=36.1
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcce
Q 012653 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQ 73 (459)
Q Consensus 30 ~~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~Q 73 (459)
+....-|.| ..+|+..+|.|++++|+.++-+.+..+.+.....-
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~ 50 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDET 50 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCC
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCC
Confidence 355567777 67899999999999999999999999988764443
No 292
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=37.51 E-value=58 Score=26.15 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=37.2
Q ss_pred eeeee-ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEE
Q 012653 112 ITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (459)
Q Consensus 112 I~Vkt-~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~ 160 (459)
|.||. ..|..+.+.++++.+-.+|.++++...++. ..+...|.|...+
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~-~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFD-NEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCC-SSCCEEEEECCSS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCeEEEEEECCC
Confidence 45554 457888899999999999999999999975 1344678887664
No 293
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=37.18 E-value=25 Score=38.27 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEc-CeecccCCcccccc
Q 012653 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE-GRELARSNSRVRDY 92 (459)
Q Consensus 41 ~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~-Gk~L~~D~~tL~dy 92 (459)
..+.+.+.+.+++|+.+++.+|++.+|++++.|.+++. |..+. ......+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~-p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALN-SAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCC-TTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCC-CCcchhhh
Confidence 45667889999999999999999999999999999986 45554 55566654
No 294
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=37.06 E-value=1.9e+02 Score=27.19 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=45.8
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcc-eEEEEc---Cee--cccCCccccccCccccccee
Q 012653 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFE---GRE--LARSNSRVRDYGLADGNVLH 101 (459)
Q Consensus 33 sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~-QrLvf~---Gk~--L~~D~~tL~dygI~~gstl~ 101 (459)
.|.+.| .++| ++.+.++++.|+.+|-.+|.++.|+.... .-|.+. |.. |. .+.++.+.++..+....
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~~~l~~q~~~~~~~~~ 74 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK-LNKKVTAQDVRKESPLL 74 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-SSSBGGGSCBCCCSSEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecc-cccCHHhhccCCCCCEE
Confidence 367888 4455 78899999999999999999999987543 245542 322 43 56677766554444333
No 295
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=36.61 E-value=1.2e+02 Score=28.92 Aligned_cols=71 Identities=7% Similarity=0.008 Sum_probs=50.1
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcc-eEEEE--cCee--cccCCccccccCcccccceeee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVF--EGRE--LARSNSRVRDYGLADGNVLHLV 103 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~-QrLvf--~Gk~--L~~D~~tL~dygI~~gstl~Lv 103 (459)
...+.+.| .++| ++.+.++++.|+.+|-..|.++.|+.... .-|.| .|.. |. .+..|.+.++..+....+.
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~-~~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLK-MDKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECC-TTSBGGGSSCCCSSSEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCC-CccCHHHcCCCCCCCEEEE
Confidence 67888999 5677 88899999999999999999999987532 24555 3322 54 6677877765544444333
No 296
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=36.49 E-value=90 Score=23.35 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=34.5
Q ss_pred eeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 124 FHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 124 ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
+++ ...||++|.+.+....+.........+..||+...+ .+.-+++|+.|.++
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 555 567999999999865432211144566678877432 34557788888875
No 297
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=36.30 E-value=60 Score=23.83 Aligned_cols=63 Identities=8% Similarity=0.122 Sum_probs=42.4
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 38 Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
|+++|+.+. +....||.+|...+ +++...-.+..+|+.+.+ ....++-+++|+.|.++....+
T Consensus 3 i~vNg~~~~--~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 3 ILFNDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp EEESSCEEC--CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEESCCC
T ss_pred EEECCEEEE--cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEeeccc
Confidence 355666554 45678999999876 455555567788888862 2334556788998887765544
No 298
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=35.26 E-value=65 Score=31.58 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=42.7
Q ss_pred ceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECC-EEc-CCCCcccccCC-CCCCEEEE
Q 012653 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-EEL-EDQRLITDICK-RNEAVIHL 180 (459)
Q Consensus 119 Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~G-k~L-eD~~tL~dy~I-~~~svI~L 180 (459)
-....+.+.+..|+..+++++++..+++ ++.|.|.+.+ ... +-......|.- .....|.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~--~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFV 383 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCC--STTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEE
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCC--hhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEE
Confidence 3455678889999999999999999998 8999999987 333 33444444442 23344444
No 299
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=34.13 E-value=1.5e+02 Score=22.69 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred eeeeeeccCCChHHHHHHHHHHhcCC-----CCC----CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 120 KVFEFHVERGRNVGYVKQQIAKKGRE-----FVD----LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 120 k~~~ieV~~~~TV~~LK~kI~~~~gi-----p~~----~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
....+++....||++|.+.+...... ... .....+..||+.... ++-+++++.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 45677887788999999999887631 100 012567789988874 4557788888875
No 300
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=32.11 E-value=1.9e+02 Score=22.86 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=37.4
Q ss_pred eEEEEEeC--CCCCHHHHHHHHHHHhCCCCcc-------e------EEEEcCeecccCCccc--cccCcccccceeeeee
Q 012653 43 SVIPMRVM--ESDSIASVKLRIQSYNGFFVKK-------Q------KLVFEGRELARSNSRV--RDYGLADGNVLHLVLR 105 (459)
Q Consensus 43 ~~~~l~V~--~~dTV~~LK~kIq~~~Gip~~~-------Q------rLvf~Gk~L~~D~~tL--~dygI~~gstl~Lvlr 105 (459)
+...+++. ...||.+|...+.++..-.... . .+..+|+... .+ .++-+++|+.|.+...
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~----~~~~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE----LEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG----GGTGGGCBCCTTCEEEEEEC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc----ccCCCCcCcCCCCEEEEECC
Confidence 56777776 6789999999998876311110 0 1223443211 11 3567888998888776
Q ss_pred ccc
Q 012653 106 LSD 108 (459)
Q Consensus 106 Lsd 108 (459)
++|
T Consensus 96 v~G 98 (99)
T 2qjl_A 96 LHG 98 (99)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 301
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=29.36 E-value=63 Score=28.58 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=27.4
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCCHHHHHHH
Q 012653 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLR 61 (459)
Q Consensus 31 ~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~k 61 (459)
.+.|.|.++++|+.+.+++.+.+||.++-..
T Consensus 7 ~~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 4679999999999999999999999887764
No 302
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.08 E-value=2e+02 Score=23.63 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=42.9
Q ss_pred CCCCCEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcceEEEEcCeec
Q 012653 29 LSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82 (459)
Q Consensus 29 ~~~~sM~I~Vtl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L 82 (459)
.....++|.....|.+..|.+.---+..+|..|+...+|-..+ |.|...+|
T Consensus 4 ~~~~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ld---L~y~n~El 54 (103)
T 2cu1_A 4 GSSGDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD---LHYTNNEL 54 (103)
T ss_dssp SSSCEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCEE---EEECSSSS
T ss_pred cccCcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCeee---EEEecceE
Confidence 3467788888889999999999999999999999999997544 77775554
No 303
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=26.29 E-value=1.8e+02 Score=22.93 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=39.6
Q ss_pred cccceeeeeecceeeeeeccCC-ChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012653 108 DLQAITVTTVCGKVFEFHVERG-RNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (459)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ieV~~~-~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~v 182 (459)
..|.|+| +|+.+.+ ... .||.+|.+.+ +++ +....+..||+.+... ...+.-+++++.|.++-
T Consensus 19 ~~M~I~v---NGe~~el--~~~~~Tv~dLL~~L----~~~--~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 19 GRHMLQL---NGKDVKW--KKDTGTIQDLLASY----QLE--NKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ---CEEE---TTEEECC--SSSCCBHHHHHHHT----TCT--TSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred cceEEEE---CCEEEEC--CCCCCcHHHHHHHh----CCC--CCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 3466664 5775544 565 7999998766 444 5566788999987531 12234578889988863
No 304
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=25.68 E-value=1.9e+02 Score=20.86 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=37.0
Q ss_pred ecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 117 ~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.+|+.+.+ ...||.+|.+.+ +.+ .....+..+|+.+... .-.+.-+++++.|.++
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~--~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVE--LKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVV 58 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBC--GGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEE
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCC--CCcEEEEECCEECCcc-ccCCcCCCCCCEEEEE
Confidence 56776655 457999998877 334 5666788899887522 1123457788888875
No 305
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=25.31 E-value=60 Score=27.12 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=53.4
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEE---CCEEcCCCCcccccCCCCCCEEEEE
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~---~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.+|+|...+ ...++.|....-|+.|-.+|-++.+++.+=.+.-|-. +-..|.-..||+.|+|+-++.++++
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 344544333 6788999999999999999998888765455666665 2245688899999999999988763
No 306
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=23.96 E-value=1.4e+02 Score=28.59 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=45.1
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCcc-eEEEEcCe-----ecccCCccccccC
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEGR-----ELARSNSRVRDYG 93 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~-QrLvf~Gk-----~L~~D~~tL~dyg 93 (459)
...|.+.| .++|....+.|++..|+.+|-..|.++.|+.... .-|.+... -|. .+..+.+..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~k~i~~q~ 83 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD-SAKEIKKQV 83 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECC-TTSBHHHHC
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhc-cchhHHHhc
Confidence 67788889 6789999999999999999999999999987543 34555321 143 556666553
No 307
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.45 E-value=2.4e+02 Score=29.87 Aligned_cols=69 Identities=9% Similarity=0.061 Sum_probs=47.1
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCc-ceEEEEcC-----eecccCCccccccCccccccee
Q 012653 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFEG-----RELARSNSRVRDYGLADGNVLH 101 (459)
Q Consensus 31 ~~sM~I~V-tl~G~~~~l~V~~~dTV~~LK~kIq~~~Gip~~-~QrLvf~G-----k~L~~D~~tL~dygI~~gstl~ 101 (459)
+..|.+.| .++| ++.+.|+++.|+.+|-..|....|+... ..-|.|.. .-|. .+.++.+.++..+..+.
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd-~~k~i~~q~~~~~~~~~ 77 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIK-LYKKVMQQDVKKENPLQ 77 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-TTSBGGGSCBCCCSSEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhh-ccccHHHhcccCCCCeE
Confidence 35678888 4566 7889999999999999999999998643 33565532 1243 55667666554444433
No 308
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.42 E-value=1.5e+02 Score=22.88 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=41.4
Q ss_pred ceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012653 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (459)
Q Consensus 111 ~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~vr 183 (459)
.|+|.|.+|..+. +....|+.++=..|....+-. -.--..+|+..+- ++-+++|++|.++-.
T Consensus 7 ~i~v~tP~G~~~~--lp~GaT~~D~A~~Ih~~lg~~----~v~AkVNG~~v~L-----~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVIS--LPIGSTVIDFAYAIHSAVGNR----MIGAKVDGRIVPI-----DYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEEE--EETTCBHHHHHHHHCHHHHHT----EEEEEETTEEECT-----TCBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEEE--ecCCCCHHHHHHHhhhhhhcc----eEEEEECCEEcCC-----CcccCCCCEEEEEcc
Confidence 5788888887655 558889999888776554311 1223457877662 456778888887643
No 309
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.17 E-value=1e+02 Score=25.27 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=41.1
Q ss_pred cceeeeeecceeeeeeccCCChHHHHHHHHHHhcCCCCCCCcEEEE--E----CCEEcCCCCccccc
Q 012653 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--C----DGEELEDQRLITDI 170 (459)
Q Consensus 110 m~I~Vkt~~Gk~~~ieV~~~~TV~~LK~kI~~~~gip~~~~~Q~Li--~----~Gk~LeD~~tL~dy 170 (459)
.-|.|-..+|....+.|+..+|++++=+++..+.+...++. -.|+ + --+-++|+..+-+.
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~-WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDET-WGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCC-CCEEEEETTTTEEEEECSSSCHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCC-eEEEEecCCCCcEEeccCchhHHHH
Confidence 34555567899999999999999999999999987552222 2222 1 12446776666554
No 310
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=21.78 E-value=2.4e+02 Score=21.30 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=37.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhC------C-----CCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 47 MRVMESDSIASVKLRIQSYNG------F-----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 47 l~V~~~dTV~~LK~kIq~~~G------i-----p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
+++....||.+|...+..... + ....-.+..+|+...+ . .-.++-+++|+.|.+....++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~-~-~~~~~~l~~gD~V~i~ppv~G 89 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITS-M-KGLDTEIKDDDKIDLFPPVAG 89 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGG-T-CSSSCBCCTTCEEEEECCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccc-c-CCCCcCCCCCCEEEEeCCCCC
Confidence 345556899999999987741 1 0123356677877652 1 223456788998888765554
No 311
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=21.31 E-value=2.8e+02 Score=21.28 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=36.2
Q ss_pred eeeccCCChHHHHHHHHHHhcCC-----CC-----C-CCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012653 123 EFHVERGRNVGYVKQQIAKKGRE-----FV-----D-LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (459)
Q Consensus 123 ~ieV~~~~TV~~LK~kI~~~~gi-----p~-----~-~~~Q~Li~~Gk~LeD~~tL~dy~I~~~svI~L~ 181 (459)
.+++ ...||++|.+.+..+..- .. . .....+..||+..+...-+ +.-+++++.|.++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTIL 87 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEE
Confidence 4554 357999999999887521 00 0 1135677788877632222 4467889998875
No 312
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=20.61 E-value=94 Score=23.12 Aligned_cols=59 Identities=3% Similarity=0.016 Sum_probs=39.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhCCCCcce--EEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ--KLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 43 ~~~~l~V~~~dTV~~LK~kIq~~~Gip~~~Q--rLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
+...+++....||.+|...+.....- .... .+..+|+... .+ .-+++|+.|.+.....+
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~-~~-----~~L~~gD~V~i~ppv~G 76 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQ-KS-----DFIQPNDTVALIPPVSG 76 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEEC-TT-----SEECTTCEEEEECSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECC-CC-----CCcCCCCEEEEECCCCC
Confidence 35667777778999999998776310 1122 5667888876 32 45677888877665544
No 313
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=20.27 E-value=1.3e+02 Score=22.42 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=38.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhC-----CCCcceEEEEcCeecccCCccccccCcccccceeeeeeccc
Q 012653 43 SVIPMRVMESDSIASVKLRIQSYNG-----FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (459)
Q Consensus 43 ~~~~l~V~~~dTV~~LK~kIq~~~G-----ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (459)
....++ ....||.+|...+..... +....-.+..+|+... . +.-+++|+.|.+....++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~-----~~~l~~gD~V~i~Ppv~G 80 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F-----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T-----TCBCCTTCEEEEECCCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C-----CCCCCCCCEEEEeCCCCC
Confidence 355565 567899999999875521 1122235667787764 3 446778998888766554
Done!