BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012654
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 75 VWVANRNSPILDPSAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNLVLV 134
+W N L S L++ ++GNLV+ N + IW+SN + N V LQ N+V+
Sbjct: 40 IWATNTGG--LSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIY 97
Query: 135 DVIR 138
R
Sbjct: 98 GTDR 101
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 75 VWVANRNSPILDPSAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNLVLV 134
+W N LD L++ S+GNLV+ + IW+SN + N V LQ N+V+
Sbjct: 40 IWATNTGG--LDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGENGNYVCVLQKDRNVVIY 97
Query: 135 DVIR 138
R
Sbjct: 98 GTAR 101
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 75 VWVANRNSPILDPSAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNLVL 133
VW +N L LT+ +NGNLV+ + + +IW + + K ++ V LQ N+V+
Sbjct: 41 VWASNTGG--LGSGCRLTLHNNGNLVIYDQSNRVIWQTKTNGKEDHYVLVLQQDRNVVI 97
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 88 SAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNLVL 133
SAVL S+GN V+ + + +W+S+ +R N + LQD GN+++
Sbjct: 54 SAVL--QSDGNFVVYDSSGRSLWASHSTRGSGNYILILQDDGNVII 97
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 73 TIVWVANRNSPILDP-SAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNL 131
T VW +N + P AVL S+GN V+ + +W+S+ R N V LQ+ GN+
Sbjct: 38 TAVWSSNTDIPGKKGCKAVL--QSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNV 95
Query: 132 VL 133
V+
Sbjct: 96 VI 97
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 73 TIVWVANRNSPILDPSAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNLV 132
T VW +N + P + + S+GN V+ + +W+S+ R N V LQ+ GN+V
Sbjct: 38 TAVWSSNTDIPGKKGCKAV-LQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 133 L 133
+
Sbjct: 97 I 97
>pdb|3MZL|B Chain B, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|D Chain D, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|F Chain F, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|H Chain H, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 345
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 351 PDLLQVSVNDNMNLKQCEAECLKNCTCRAYAYSNLTEGSGC------LMWFGDLIDISKT 404
PDL DN + + +ECL R +SN GS + F + I+++ +
Sbjct: 252 PDLEDKLKKDNKTIYEAHSECLTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTS 311
Query: 405 LGNF 408
GNF
Sbjct: 312 TGNF 315
>pdb|2PM6|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
Length = 399
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 351 PDLLQVSVNDNMNLKQCEAECLKNCTCRAYAYSNLTEGSGC------LMWFGDLIDISKT 404
PDL DN + + +ECL R +SN GS + F + I+++ +
Sbjct: 289 PDLEDKLKKDNKTIYEAHSECLTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTS 348
Query: 405 LGNF 408
GNF
Sbjct: 349 TGNF 352
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 73 TIVWVANRNSPILDP-SAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNL 131
T VW N + P AVL S+GN V+ + +W+S+ R N V LQ+ GN+
Sbjct: 38 TAVWTTNTDIPGKKGCKAVL--QSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNV 95
Query: 132 VL 133
V+
Sbjct: 96 VI 97
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 73 TIVWVANRNSPILDPSAVLTV-SSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNL 131
T VW +N + IL V S+GN V+ + +W+S+ R N V LQ+ GN+
Sbjct: 38 TSVWASN--TGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNV 95
Query: 132 VL 133
V+
Sbjct: 96 VI 97
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 73 TIVWVANRNSPILDPSAVLTV-SSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNL 131
T VW +N + IL V S+GN V+ + +W+S+ R N V LQ+ GN+
Sbjct: 38 TSVWASN--TGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNV 95
Query: 132 VL 133
V+
Sbjct: 96 VI 97
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 75 VWVANRNSPILDPSAVLTVSSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNLVLV 134
VW + N VL + ++GNLV+ + ++ I W+SN +R+ N LQ N+V+
Sbjct: 40 VWASGTNGKA--SGCVLKMQNDGNLVIYSGSRAI-WASNTNRQNGNYYLILQRDRNVVIY 96
Query: 135 D 135
D
Sbjct: 97 D 97
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 376 TCRAYAYSNLTEGSGCLMWFGDLIDISKTLGNFTGQSVYIRVPALGPGTIIIAI-LKLIA 434
TC + +L CL+ D +D++ L NFTG ++ R+ P +++++ ++ +
Sbjct: 130 TCLGFEELSLLISGECLLTATDTVDVAMPL-NFTGGQLHSRMFQNFPTELLLSLAVEPLT 188
Query: 435 QNFH 438
NFH
Sbjct: 189 ANFH 192
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 73 TIVWVANRNSPILDPSAVLTV-SSNGNLVLLNVTKGIIWSSNISRKVENPVAQLQDTGNL 131
T VW +N + IL V ++GN V+ + +W+S+ R N V LQ+ GN+
Sbjct: 38 TSVWASN--TGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNV 95
Query: 132 VL 133
V+
Sbjct: 96 VI 97
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 128 TGNLVLVDVIRKNTSESYLWQSFDYPSD 155
TG + + I KNT ++Y+ Q FD P++
Sbjct: 234 TGAVQKAEEILKNTPDAYMLQQFDNPAN 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,692,409
Number of Sequences: 62578
Number of extensions: 652329
Number of successful extensions: 1371
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1361
Number of HSP's gapped (non-prelim): 22
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)